lowQualScore : 111111111111111111111111111111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111111111111111111111111111111111111111111111 222222222222222
lowQualScore : 444444444444444444444444444444444 1 4 444 1 4 33 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 333333 1 11 111 7777777777777777777777777777777777777777777777777777777777777777777777777 1 111 11 11 11 3333 11 33333333333333 111111111 11111 333333333333 11 1 11 11 1 222222222 2222 22222222222222222222222222222222222222222222222222 11 1 111111111 1 1 1 4 444444444444444 4 6666 4 33 55 4 4 1 4 4 55 4 1 55555 1 55 4 4 1 1 55 4 11 888888 55 22 1 55 1
lowQualScore : 6 333333333333333333333333333333333 5 0 777 5 0 22 7 6 6 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 6 111111 6 7 0 7 55 777 7777777777777777777777777777777777777777777777777777777777777777777777777 3 6 7 6 999 7 3 3 66 2 44 88 1 11 1111 8 11 5 3 00000000000000 888888888 6 44444 999999999999 99 5 2 5 1 5 88 0 1 0 44 8 0 4 4 44 0 0 555555555 1 1111 2 77777777777777777777777777777777777777777777777777 33 77 7 33 0 333333333 0 7 6 5 7 6 6 6 0 111111111111111 6 0 2222 0 00 6 6 6 55 0 6 6 0 6 5 0 0 55 0 7 33333 5 55 0 0 5 7 55 0 22 333333 55 11 5 55 5 6
lowQualScore : . ................................. . . ... . . .. . . . ............................................................................................................................................................................................................................................................................................. . . ...... . . . . .. ... ......................................................................... . . . . ... . . . .. . .. .. . .. .... . .. . . .............. ......... . ..... ............ .. . . . . . .. . . . .. . . . . .. . . ......... . .... . .................................................. .. .. . .. . ......... . . . . . . . . . ............... . . .... . .. . . . .. . . . . . . . . .. . . ..... . .. . . . . .. . .. ...... .. .. . .. . .
lowQualScore : 0 000000000000000000000000000000000 0 0 000 0 0 00 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 555555 7 0 7 0 77 777 0000000000000000000000000000000000000000000000000000000000000000000000000 7 0 0 0 000 0 5 2 22 5 55 22 2 00 8888 0 00 2 3 55555555555555 000000000 7 77777 888888888888 66 4 8 6 4 0 00 0 4 8 66 0 8 5 2 00 2 0 888888888 2 2222 5 00000000000000000000000000000000000000000000000000 88 00 8 88 0 888888888 0 0 0 0 0 0 0 0 0 000000000000000 0 0 0000 0 00 0 0 0 00 0 0 0 0 0 0 0 0 00 0 0 00000 0 00 0 0 0 0 00 0 00 000000 00 00 0 00 0 0
consensus : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAAT---ATTTCATGGGG--TT------------TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTTGATGGCTATATGTAGANACGCATTCACGGTAATGGGCAGATATCATTCCTCTGTACTTGGGNNACTGGACGTGNGNTAGGNTNTGNNTGNTGGGGNTTAGNANTTTCACNTGGGNCCTTGAGTGTCAAACNTATNGTATTNACAATCAATATTTGACCACGCGTGAATT-A-GGATCAAATTCGT-TGTAAT--TTCTGAN--AAT--GTACTNC-----GCGCG---GGTG--TTAC-ATTTTC----ACAAAGAAGCGAGTGTTTCGTCCATNCTCGCTCATTGTTCTATCCNAAGTTTGTTTACGTTATAGGAANTGTGTATGAAGTTGCAA--AAA-G-AGA-TAACTG--ACACANAATANTGATA-ATA-GTA--ACGTCG-TAATCGTT-AGA--AC-AAT--ATAC-CCT-TGTTAAGNTGTCAGAGAATCAAGTATCCGGATTCCAAGTGGTGGTTCT-AAGTCACGTAACAN-CAAGCACAGT-ATCATACAAT-T-CATTC----ACTTAC--------------------TTCATCAT------T---TG---T--TNAAA--AAACGCGTTTNACGT-TTCCT-CTGCCCAACCTGTTTTTGTTATATACTTTTTTTAAAGATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATTTGATCCGCGGCATTGTAATTTCTGTAGATGTATTTTTCAAATGGT-AGATAGTGTTTGTT--------------TAGTGTAATAATAGTAAGTTTGTTATTGCGATTGATATCAGTGTTGTAT-TTGGACAGGTCAGACAATTTG-TTAACACTTAATCTTGATATCACTCCACGCCCAAGTAATTTATGACACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAA--TTTTAGATTAC-ATGCTCCTGACAGGAAGCGATATAGAATATACGG-AAGTACACCAACTATCTTAGGAAAATATGTAGATTTCTTAAAAC-AAAAC--AAAAATCGATCGC-TGAAATATTTTAAGTTATTTCATTTAT-CACTTATCTAAAGATTCAAAA-TATATCAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCAAACCAATATCTTTTGTAATGATATGGAAGAGACCTGTATTTGTGTACTCTGTGATAAAAAAAGATATC
Reference ( gi|1 ) : CTTGATTATCATTAGTTGGAA--TATA--AATCATCG--TTTG-TAGCT-TAATTTCATAATTTACAGAAAACGTTTACATTTC-CTCTAGTAC-GCGTAATCTTCCAGACGTTTTCCATCATTGTAAGA----AACAAGTAAATAGCAGTGAAATAAAATT--GTGAGGCATTCTGTTTGTTGTATTTTTTTTCATTCTG----GTTAAATTTG-TATTTACTGTCA-CTTTAGTGGA-CACA-TGCATAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATTGCTA------GAAATTGATTCAAGTTAATGGACAG----CGTT-----GTGT--AGAACACTGGATGT-TGGT-GAATTTGACTGGTAGGAA--AGGAATTTCACTTGCAA----GAGTATCAAACCT-TAGTATTGACATTCAGTATTTGACAACGCTTGAATT-A-GGATAAAAATCGTATGTAAT--TTTTGCT--AATGTGTACTTC-----GCGCG---GGTG--TTAA-ATTTT-----ACAAAGAAGCAAATATATCACTCATACACACTCATTGTTATATCCAAAGTTTGTTTAAATTATAGGAAGTGTGCATCAAGTTGCAA--AAACA-AGA-TAACTG--ACACAGAATATTAATAAATA-GTA--ACGTCG-TAATCGTT-AGA--AT-AAT--TTAC-CCT-TGTTAAAATTTCGGAGAATCAAGTCTCTTGAGTCCAAGTGGTGGTTCT-AAGTCATGTGACAA-CAAGCACAAT-ATCATTCAGT-T-CATTC----ACTTA---------------------TTTATTAT------T---TG---T--TGAAA--AAATGCATTTAATGT-TTCCT-CTGTCCAACCTGTATTTGTTATATATTTTTTTTCAAGATTAAAANNNNNNNNNNNNNNNNNNNNNNNNNGATGAAAAAATTTGATCCGCAGCATTGCAATTTCTGTAGATGTATTTTTCAAATGGTTAGATAGTGTTTGTCCTCCACCATACCTGTAGTGTAATGATAGTAAGTTTGTTATTGCGA-TGATATCAGTGTTG-ATATTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCACAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACTTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGAAAGCAATATAGAATATACGGAAAGTACACTAAATATCTTAGGAAAATATGTAGA-TTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTATAA-TTA-TTCAGTTATAAACTTATCT-AAGATTCAAAATTATATAAATTATATCTTTGTGTGTCTAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCAAACC--TATCTTT-GTAACAAT---GGTGAGACCTGT--TTGTGTAACCTGGGAT--AACAAGGTATCGA
gi|8 : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA
gi|6 : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATAttaaatatttcatggggtttttttattcgtggtgctacgttgcatttgatgtttactgacagagtaagtggaccacaccgtaaaat
gi|7 : TTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAAT---ATTTCATGGGG--TT------------TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTttaaatatttcatggggtttttttattcgtggtgctacgttgcatttgatgtttactgacagagtaagtggaccacaccgtaaaat
gi|3 : CACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTTAGGACA--GGACGTGCGTT-GGCTTTGAGTGGT--GAATTAGAATTTTCACATGAGC----GAGTGTCAAACGTATA-TATTCACAATCAATATTTGACAACGTGTGAATTAA-AGAT-ACATTCGTCAGCTAT--TTTTGGGGAAATG-GT-CTAC-----GTGCGCTAGCTGGATTTC-TTTTT-----ACAAAGATGTGAGTGTTTTGTTCATACTCATTCATTGTTATATCCAAAGTTTGTTTACATTATAGGAAGTGTGTATGAAGCTGCAA--AAA-G-AGA-TAACTGACACACACAAGAGTGATGCATT-GTA--AAGTTT-GAATGGCT-GCA--AC-AA-----ACGCCTCTGTTAAGCTTCCAGAAAATCAAGTCTCCGGAGTTTAAACGATGGTTCT-AAGTCACGTAACAT-CAAGCACAAT-ATCGCATAAT-T-CATTT----A-TTAC--------------------TTCATCAT------G---TG---TAATTAAA--AAACATTTTTTATCTATTTCT-CT-CCCTATCTTTTTTTTTTA
gi|4 : TTGATGGCTA------GAAACGCATTCACGGTAATGAACAG----T-TT-----ATAC--GGGTAACT-----T-AGGTAGAATATGTCTATTGGAGC--AGTAATT--ACCTAGAACCTTGA-TGTTAAACTT-TTGTATTTACAATTAATATTTGACCACGTGTAAATT-AAGGATCAA--TCTT-TGTACTAGTTCTAAC--AAT---TATTCCTGTGTGCGCT---GGTA--TTATTATTTTTTTCTATAAAGAAGAAAGTATTTCATCCATTTTTGCTCATTGTTCTATACCAAGCTTGTTTACATTATGGGGTTTGTGGA---AGATGTAACGAAAGAGAAA-TAACCG--CCACAAAATAGTGA-----A-ACA--ATGT---------TT-AGA--AC-AAT--AAGT-CCC-TGTTAAGGTGTCATAGAATCATGTATCCGGATTATAAGTGACGACTTT-AAGTCACGTGGTAT-CAAACATAGG-ACCAT--AATATGCATCC----ACTTT---------------------CTCATTAT------TGACTA---T--C--AA--AAATGTGTTCGACCT-CTCCTGATGTTTATCTTGTCAATGTTATATAccacaacttgttagaaaactgttgactttcattagtagcattacagttgtttttagatatgttctttaaatatgagataatgtacttttaccattaatgtggctatgtaacaatggtatttttattattgtgagttgtattaacattgtattgacatcag
gi|11 : TGTTGACAATCAGTATTTGACCACGCGTGGATA-A-GGGTTAAATTTGAGTGTAAT--TTCTGAT--AATTTGTACTTT-----GTGCG---CGTG--TTAC-ATTTTC----ACAAAGAAGCAataaaaaatattgatcccccttatcagcatgggatatttttagtcagaccagcgttttaaatgtacggtagtgtttccaccattaatggtgtaatgtaacattgctacgtttatcatcatgtattatattcactttatgagaccggtca
gi|5 : ttTCATTGATCTATCCTGATTTTGAGTACGTTATAAGAAGTCTTTGTAAAGTTGCAA--AA-TG-AGA-TAACTA--ACAGATAATGATGATAAA---------CGTCA-TAA-CGTTTCGACCAA-AAT--TT---CGA-TATTAAGCCGCCACAAAATCAATTAGCCGGATTCCA--TA-TGGTTCT-AAA-------ATAATCAAACACGGT-ATCATACTAA-T-CATAT----ACCTA---------------------TTCATCATAGGTTAT---TT---T--TATAGGTACATGTGTTTTATGT-TTCAG-TTGTT---CTCGTTTTCGTCATATActatttcgtcca
gi|12 : aTCCAA-GTTTGTTTACTTTATAGGAATTGTACATGAGGTTGCAG--AA--G-AGATTTACTG--ATACATAGTATCAAT--ACA-GTGCTACGTCG-TATTTGCT-AAA--AC-AAA--ATGC-CGT-TGTTAAcatcaggattttcgtcagcggcattgtagatttttcagaagtacactttatatgtaagattttatgcgtttataattaatgctgtaatgtagattaggtgtgtttatcattgtgcattatgtcaccattgtatggagactggtca
gi|2 : A--AAACA-AGA-TAACTG--ACACAGAATATTA--AAATAGGTA--ACGTCGTTAATCATT-AGA--ACAAAA--ATAC-CCT-TGTTAAAATTTCGGAG-ATCAAGTCTCTGGATTTCAAGT-GTGGTTCTAAAGTCATGTAACAA-CAAGCAAAATCATCAATCAGT-T-CATTCCACTACTTANNNNNNNNNNNNNNNNNNNNNNNNNTCAT------T---TGTTTT--TGAAA--GAATGCATTTAAAGT-TTCCT-CTGCCCAACCTGCATTTGT--TATACTTTTTTTAAAGATTTAAca
gi|14 : aattggcaagCACAGAATATTGAAACATA-GCA--ACGTCA-GAATATTT-AGA--AC-GATAATTAT-C---TGTTAAGGTGTCAGAGCACCATGTATCCGGATACCAAGTTGTGCATTT-AAGTCAgatttgatccgcggcattgtaatttctgtagatgtatttttcaaatggtagatagtgtttgtttagtgtaataatagtaagtttgttattgcgattgatatcagtgttgtatttggacaggtcagacaatttgttaacacttaatcttgatatcactccacgcccaagtaatttatgacacaatcttacaataaattagcattacctacttcgaacattgacttccttattattcaaattttagattacatgctcctgacaggaagcgatatagaatatacggaagtacaccaactatcttaggaaaatatgtagatttcttaaaacaaaacaaaaatcgatcgctgaaatattttaagttatttcatttatcacttatctaaagattcaaaatatatcaattatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgagcaccaaaccaatatcttttgtaatgatatggaagagacctgtatttgtgtactctgtgataaaaaaagatatccaa
gi|2 : AAGATTTGATCCGCGGCATTGTAATTTCTGTAGATGTATTTTTCAAATGGT-AGATAGTGTTTGTT--------------TAGTGTAATAATAGTAAGTTTGTTATTGCGATTGATATCAGTGTTGTAT-TTGGACAGGTCAGACAATTTG-TTAACACTTAATCTTGATATCACTCCACGCCCAAGTAATTTATGACACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAA--TTTTAGATTAC-ATGCTCCTGACAGGAAGCGATATAGAATATACGG-AAGTACACCAACTATCTTAGGAAAATATGTAGATTTCTTAAAAC-AAAAC--AAAAATCGATCGC-TGAAATATTTTAAGTTATTTCATTTAT-CACTTATCTAAAGATTCAAAA-TATATCAATTATATca
gi|2 : aattggcaagaaaacaagataactgacacagaatattaaaataggtaacgtcgttaatcattagaacaaaaatacccttgttaaaatttcggagatcaagtctctggatttcaagtgtggttctaaagtcatgtaacaacaagcaaaatcatcaatcagttcattccactacttannnnnnnnnnnnnnnnnnnnnnnnntcatttgtttttgaaagaatgcatttaaagtttcctctgcccaacctgcatttgttatactttttttaaagatttGCACCAAACCAATATCTTTTGTAATGATATGGAAGAGACCTGTATTTGTGTACTCTGTGATAAAAAAAGATATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgagcaccaaaccaatatcttttgtaatgatatggaagagacctgtatttgtgtactctgtgataaaaaaagatatccaa
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): ATGGCTACAAACTGATTCATCTTAATGTACAGATAACATCCCCTCATATATAGGAGTAAACGTACGTAGTCTTTTTTTTTTTTGGAGTAGAAATATCACATGCACTCATTGTTAAACTTACGTATTTACAATCGATGTTTGACCACCTGTGGAATAACGATCACTGTGTGCGTTCTTGTCGTATTTGTCGTATGTGCGCATGGATTATTAATT
Unaligned ( gi|10 ): CACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTCAGGGCAGGGCGTGTATTGGCTTTGACTGGTGAATTAGAATTTTCACATGAGCGAGT
Unaligned ( gi|13 ): CAATCAATATTTTACCACATGTAAATTAAGGATCAATATATGCACTGTTTCTAATCATTTGTCCTACGAGTGCTTGTTTAATATTTTTTGTAGAAAGAAGAAACTATTTCGTC
Unaligned ( gi|15 ): ATATTGATCCCCCTTATCAGCATGGAATATCTTTATTCAGAACAGCGTTTTAAATACACGATAGCGTTTTCACCATTAATGTTGTAATGTAATAATGCTAC
Unaligned ( gi|16 ): TTTACGTTTACTGGGTTACTAATGGAGATACACATTATTTGTGTTGCCCATATCATTCCAATGCCA
Unaligned ( gi|17 ): AATCTGGTATGGACGCTTGATTATCACCCAAGTTACATCAACATATGACCACCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 11 1 1 2222 111 44444444444 111 333333333333333333333333333333333333 444444 11 1111 44444444444444444444444 3333333 5555555 2222 111 1111111111111 11 111 22 111 22222 111 11 111111 44444444 11 11 33333 111111111 1111 2222222 22222222222222222222 333333333 000000000000000000000000000000000000000000 1 1 111 111 1 11 999999999999999999999999999999999999 11 2222 1111 1111 2 22 2 2 1 2 22 2 1 1 22 1 2 11 1 222 11 11
lowQualScore : 2 3 3 3 2 33 0 3 3 2 0 1111 777 3 77777777777 777 2 3 3 2 2 666666666666666666666666666666666666 000000 1 66 99 7777 555 22222222222222222222222 22 1 22 1 3333333 1 1 0 1 0000000 8 1 2222 1 0 6 6 000 5 9999999999999 555 11 222 22 222 1 00000 1 444 11 777777 00000000 22 3 2 1 0 2 1 4 1 6 99 6 55 99 1 1 00000 5 77 000000000 7777 1 99 1 2 3 88 6 3 1 8 1 1 2222222 88888888888888888888 1 22 1 44 8 333333333 0 3 555 3 4 333333333333333333333333333333333333333333 2 2 0 0 8 666 777 0 33 0 444444444444444444444444444444444444 7 33 1 1111 4444 55 0 3 6666 2 0 55 77 0 0 2 5 0 77 0 4 5 5 3 22 5 0 2 4 88 5 111 4 88 2 3 88 3
lowQualScore : . . . . . .. . . . . . .... ... . ........... ... . . . . . .................................... ...... . .. .. .... ... ....................... .. . .. . ....... . . . . ....... . . .... . . . . ... . ............. ... .. ... .. ... . ..... . ... .. ...... ........ .. . . . . . . . . . .. . .. .. . . ..... . .. ......... .... . .. . . . .. . . . . . . ....... .................... . .. . .. . ......... . . ... . . .......................................... . . . . . ... ... . .. . .................................... . .. . .... .... .. . . .... . . .. .. . . . . . .. . . . . . .. . . . . .. . ... . .. . . .. .
lowQualScore : 5 2 2 2 5 88 0 2 2 5 0 2222 555 2 55555555555 555 5 2 2 5 5 000000000000000000000000000000000000 444444 0 44 66 6666 222 22222222222222222222222 44 0 00 0 0000000 0 0 8 0 8888888 8 0 2222 0 7 7 7 222 2 8888888888888 444 00 000 00 000 0 00000 4 000 00 444444 66666666 88 2 8 0 7 5 0 6 0 8 22 7 88 22 0 0 99999 7 99 999999999 4444 1 00 0 5 0 88 7 8 0 0 4 4 0000000 22222222222222222222 8 22 0 00 0 000000000 8 7 555 0 0 000000000000000000000000000000000000000000 5 5 0 0 8 000 555 0 88 2 222222222222222222222222222222222222 0 88 2 2222 2222 88 2 2 5555 5 0 55 55 0 0 5 5 0 55 0 0 0 5 0 55 5 0 5 0 55 5 000 0 55 5 0 55 0
consensus : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACACTGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGAGAC-CTGAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATT-A-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGAT--AATTTGT--ACTNC-----GCGCG---GGTG--TT--AC-ATTTT---T----ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCCAACTTGTTTTTGTTATATANTNCNTTTNAAGNTTCCTCNGCCCAACCTGCATTTGTTATACTTTTTTTAAGGNNNNAAGATTTNATCNGCGGCATTGCA-ATT-TCTGTAGATGTATTCTTCAAATGN-NAGA---TA-GTGT--TTGTA---T--------------TAG---TGT--------AATAATAG--TAAGTTTGTT----ATTGCG-A-TTGATATCAGCGTTGTAT-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
Reference ( family-1649 ) : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTTGATGGCTATATGTAGANACGCATTCACGGTAATGGGCAGATATCATTCCTCTGTACTTGGGNNACTGGACGTGNGNTAGGNTNTGNNTGNTGGGGNTTAGNANTTTCACNTGGGNCCTTGAGTGTCAAACNTATNGTATTNACAATCAATATTTGACCACGCGT-GAATT-A-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGAN--AA--TGT--ACTNC-----GCGCG---GGTG--TT--AC-ATTTT---C----ACAAAGAAGCGAGTGTTTCGTCCATNCTCGCTCATTGTTCTATCCNAAGTTTGTTTACGTTATAGGAANTGTGTATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATANTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAATA--TACCCTTGTTAAGNTGTCAGAGAATCAAGTATCCGGATTCCAAGTGGTGGTTCTAA-GTCACGTAACANCAAGCACAGT-ATCATACAATTCATTCACTTACTTCATCAT---TTG--T--T-NAAA---AAACGCGTTTNACGT-TTCCT-CTGCCCAACCTGTTTTTGTTATATACTTTTTTTAAAGATT----TA---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATTTGATCCGCGGCATTGTA-ATT-TCTGTAGATGTATTTTTCAAATGG-TAGA---TA-GTGT--TTGT----T--------------TAG---TGT--------AATAATAG--TAAGTTTGTT----ATTGCG-A-TTGATATCAGTGTTGTAT-TTGGACAGGTCAGACAATTTG-TTAACACTTAATCTTGATATCACTCCACGCCCAAGTAATTTATGACACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAA--TTTTAGATTAC-ATGCTCCTGACAGGAAGCGATATAGAATATACGG-AAGTACACCAACTATCTTAGGAAAATATGTAGATTTCTTAAAAC-AAAAC--AAAAATCGATCGC-TGAAATATTTTAAGTTATTTCATTTAT-CACTTATCTAAAGATTCAAAA-TATATCAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCAAACCAATATCTTTTGTAATGATATGGAAGAGACCTGTATTTGTGTACTCTGTGATAAAAAAAGATATC
gi|1 : CTTGATTATCATTAGTTGGAA--TATA--AATCATCG--TTTG-TAGCT-TAATTTCATAATTTACAGAAAACGTTTACATTTC-CTCTAGTAC-GCGTAATCTTCCAGACGTTTTCCATCATTGTAAGA----AACAAGTAAATAGCAGTGAAATAAAATT--GTGAGGCATTCTGTTTGTTGTATTTTTTTTCATTCTG----GTTAAATTTG-TATTTACTGTCACTTTA-GTGGAC-ACAT-GCATAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATTGCTA------GAAATTGATTCAAGTTAATGGACAG----CGTTG---TGTA----GAACACTGGATGT-TGGT-GAATTTGACTGGTAGGAA--AGGAATTTCACTTGCAA----GAGTATCAAACCT-TAGTATTGACATTCAGTATTTGACAACGCTT-GAATT-A-G-GATAAA---AATCG-TAT-GTAAT--TTTTGCT--AA--TGTGTACTTC-----GCGCG---GGTG--TT--AA-ATTTT--------ACAAAGAAGCAAATATATCACTCATACACACTCATTGTTATATCCAAAGTTTGTTTAAATTATAGGAAGTGTGCATCAAGTTGCAA--AAACAAGA--TAACTG--ACACAGAATATTAATA-AATAG-TA--ACGTCGT-AATCG-TTAGAATAATT--TACCCTTGTTAAAATTTCGGAGAATCAAGTCTCTTGAGTCCAAGTGGTGGTTCTAA-GTCATGTGACAACAAGCACAAT-ATCATTCAGTTCATTCACTTA-TTTATTAT---TTG--T--T-GAAA---AAATGCATTTAATGT-TTCCT-CTGTCCAACCTGTATTTGTTATATATTTTTTTTCAAGATT----AA---AANNNNNNNNNNNNNNNNNNNNNNNNNGATGAAAAAATTTGATCCGCAGCATTGCA-ATT-TCTGTAGATGTATTTTTCAAATGGTTAGA---TA-GTGT--TTGT----CCTCCACCATACCTGTAG---TGT--------AATGATAG--TAAGTTTGTT----ATTGCG-A--TGATATCAGTGTTG-ATATTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCACAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACTTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGAAAGCAATATAGAATATACGGAAAGTACACTAAATATCTTAGGAAAATATGTAGA-TTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTATAA-TTA-TTCAGTTATAAACTTATCT-AAGATTCAAAATTATATAAATTATAT
gi|1 : GCTCCAAACC--TATCTTT-GTAACAAT---GGTGAGACCTGT--TTGTGTAACCTGGGAT--AACAAGGTATCctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctccaaacctatctttgtaacaatggtgagacctgtttgtgtaacctgggataacaaggtatcga
gi|10 : cttgattatcattagttggaatataaatcatcgtttgtagcttaatttcataatttacagaaaacgtttacatttcctctagtacgcgtaatcttccagacgttttccatcattgtaagaaacaagtaaatagcagtgaaataaaattgtgaggcattctgtttgttgtattttttttcattctggttaaatttgtatttactgtcactttagtggacacatgcataattatccttatcatggtactgatcttagcatgtattgtccactttgattgctagaaattgattcaagttaatggacagcgttgtgtagaacactggatgttggtgaatttgactggtaggaaaggaatttcacttgcaagagtatcaaaccttagtattgacattcagtatttgacaacgcttgaattaggataaaaatcgtatgtaatttttgctaatgtgtacttcgcgcgggtgttaaattttacaaagaagcaaatatatcactcatacacactcattgttatatccaaagtttgtttaaattataggaagtgtgcatcaagttgcaaaaacaagataactgacacagaatattaataaatagtaacgtcgtaatcgttagaataatttacccttgttaaaatttcggagaatcaagtctcttgagtccaagtggtggttctaagtcatgtgacaacaagcacaatatcattcagttcattcacttatttattatttgttgaaaaaatgcatttaatgtttcctctgtccaacctgtatttgttatatattttttttcaagattaaaannnnnnnnnnnnnnnnnnnnnnnnngatgaaaaaatttgatccgcagcattgcaatttctgtagatgtatttttcaaatggttagatagtgtttgtcctccaccatacctgtagtgtaatgatagtaagtttgttattgcgatgatatcagtgttgatattggacaggtcagacaatttgtttaacacttaatcttgatatcactccacgccacagcaatttatggcacaatcttacaataaattagcattacttacttcgaacattgacttccttattattcaaagtttttagattacaatgctcctgacagaaagcaatatagaatatacggaaagtacactaaatatcttaggaaaatatgtagattcttaaaacaaaaacaaaaaaatcgatcgcttgaaatattataattattcagttataaacttatctaagattcaaaattatataaattatatctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTCAGGGCA--GGGCGTGTATT-GGCTTTGACTGGT--GAATTAGAATTTTCACATGAGga
gi|11 : TGTTGACAATCAGTATTTGACCACGCGT-GGATA-A-G-GGTTAA---ATTTGAG-T-GTAAT--TTCTGAT--AATTTGT--ACTTT-----GTGCG---CGTG--TT--AC-ATTTT---C----ACAAAGAAGC-ACTATTTCGTCCAcgagt
gi|12 : ttCCAAGTTTGTTTACTTTATAGGAATTGTACATGAGGTTGC-A--GAA-GAGAT-TTACTG--ATACATAGTATCAAT--A-CAG-TGCTACGTCGT-ATTTG-CTAAAACAAAA--TGCCGTTGTTAA
gi|13 : tCAATCAATATTTTACCACATGT-AAATTAA-G-GATCAATATATGCA-C-T-G---T--TTCTAAT--CATTTGT--CCTAC-----GAGTG---CTTG--TTTAAT-ATTTTTTGT----AGAAAGAAGAAACTATTTCGTCca
gi|14 : CACAGAATATTGAAACA-TAG-CA--ACGTCAG-AATAT-TTAGAACGATAATTATC--TGTTAAGGTGTCAGAGCACCATGTATCCGGATACCAAGTTGTGCATTTAA-GTCAC
gi|2 : AA--AAC-AAGA--TAACTG--ACACAGAATATTAA-A-A-TAGGTA--ACGTCGTTAATCA-TTAGAACAAAAA-TACCCTTGTTAAAATTTCGGAGA-TCAAGTCTCTGGATTTCAAGTG-TGGTTCTAAAGTCATGTAACAACAAGCAAAATCATCAATCAGTTCATTC--------CACTAC---TTA--N--N-NNNN---NNNNNNNNNNNNNNN-NNNNT-C------ATTTGTTTTTG--AAAGAATGCATTTAAAGTTTCCTCTGCCCAACCTGCATTTGTTATACTTTTTTTAAAGATTTAAGATTTGATCCGCGGCATTGTA-ATT-TCTGTAGATGTATTTTTCAAATGG-TAGA---TA-GTGT--TTGT----T--------------TAG---TGT--------AATAATAG--TAAGTTTGTT----ATTGCG-A-TTGATATCAGTGTTGTAT-TTGGACAGGTCAGACAATTTG-TTAACACTTAATCTTGATATCACTCCACGCCCAAGTAATTTATGACACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAA--TTTTAGATTAC-ATGCTCCTGACAGGAAGCGATATAGAATATACGG-AAGTACACCAACTATCTTAGGAAAATATGTAGATTTCTTAAAAC-AAAAC--AAAAATCGATCGC-TGAAATATTTTAAGTTATTTCATTTAT-CACTTATCTAAAGATTCAAAA-TATATCAATTATATa
gi|2 : aattggcaagGCACCAAACCAATATCTTTTGTAATGATATGGAAGAGACCTGTATTTGTGTACTCTGTGATAAAAAAAGATATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgagcaccaaaccaatatcttttgtaatgatatggaagagacctgtatttgtgtactctgtgataaaaaaagatatccaa
gi|3 : aattggcaagaaaacaagataactgacacagaatattaaaataggtaacgtcgttaatcattagaacaaaaatacccttgttaaaatttcggagatcaagtctctggatttcaagtgtggttctaaagtcatgtaacaacaagcaaaatcatcaatcagttcattccactacttannnnnnnnnnnnnnnnnnnnnnnnntcatttgtttttgaaagaatgcatttaaagtttcctctgcccaacctgcatttgttatactttttttaaagatttaagatttgatccgcggcattgtaatttctgtagatgtatttttcaaatggtagatagtgtttgtttagtgtaataatagtaagtttgttattgcgattgatatcagtgttgtatttggacaggtcagacaatttgttaacacttaatcttgatatcactccacgcccaagtaatttatgacacaatcttacaataaattagcattacctacttcgaacattgacttccttattattcaaattttagattacatgctcctgacaggaagcgatatagaatatacggaagtacaccaactatcttaggaaaatatgtagatttcttaaaacaaaacaaaaatcgatcgctgaaatattttaagttatttcatttatcacttatctaaagattcaaaatatatcaattatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgaCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTTAGGACA--GGACGTGCGTT-GGCTTTGAGTGGTGA--ATTAGAATTTTCACATGAGC----GAGTGTCAAACGTATA-TATTCACAATCAATATTTGACAACGTGT-GAATT-A-AAGAT-AC---ATTCG-T-CAGCTAT--TTTTGGGGAAA--TGG--TCTAC-----GTGCGCTAGCTGGATT--TC--TTTT---T----ACAAAGATGTGAGTGTTTTGTTCATACTCATTCATTGTTATATCCAAAGTTTGTTTACATTATAGGAAGTGTGTATGAAGCTGCAA--AAA-GAGA--TAACTGACACACACAAGAGTGATGCA-TTG-TA--AAGTTTG-AATGG-CTGCAACAA-A--CGCCTCTGTTAAGCTTCCAGAAAATCAAGTCTCCGGAGTTTAAACGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCGCATAATTCATTTA-TTACTTCATCAT---GTG--TAAT-TAAA---AAACATTTTTTATCTATTTCT-CT-CCCTATCTTTTTTTTTTAcaa
gi|3 : TTTCATTAGTAGCATTACA-GTTGTTTTTAGATATGTTCTTTAAATAT-GAGA---TA-ATGTACTTTTACCAT--------------TAA---TGTGGCTATGTAACAATGG--TATTTTTATT----ATTGTG-AGTTG-TATTAACATTGTAT-T--GACA--TCAGccacaacttgttagaaaactgttgactttcattagtagcattacagttgtttttagatatgttctttaaatatgagataatgtacttttaccattaatgtggctatgtaacaatggtatttttattattgtgagttgtattaacattgtattgacatcag
gi|4 : cactttgatggttatatgtagacatttattcattgtaatgggcagatatcattcctctgtatttaggacaggacgtgcgttggctttgagtggtgaattagaattttcacatgagcgagtgtcaaacgtatatattcacaatcaatatttgacaacgtgtgaattaaagatacattcgtcagctatttttggggaaatggtctacgtgcgctagctggatttctttttacaaagatgtgagtgttttgttcatactcattcattgttatatccaaagtttgtttacattataggaagtgtgtatgaagctgcaaaaagagataactgacacacacaagagtgatgcattgtaaagtttgaatggctgcaacaaacgcctctgttaagcttccagaaaatcaagtctccggagtttaaacgatggttctaagtcacgtaacatcaagcacaatatcgcataattcatttattacttcatcatgtgtaattaaaaaacattttttatctatttctctccctatcttttttttttaccacaacttgttagaaaactgttgacTTGATGGCTA------GAAACGCATTCACGGTAATGAACAG----------TTTATAC--GGGTAACT-----T-AGGTAGAATATGTCTATTGGAGC--AGTAATT--ACCTAGAACCTTGA-TGTTAAACTT-TTGTATTTACAATTAATATTTGACCACGTGT-AAATT-AAG-GATCAA-----TCT-T-T-GTACTAGTTCTAAC--AA--T-T--ATTCCTGTGTGCGCT---GGTA--TT--ATTATTTT---TTTCTATAAAGAAGAAAGTATTTCATCCATTTTTGCTCATTGTTCTATACCAAGCTTGTTTACATTATGGGGTTTGTG---GAAGATGTAACGAAA-GAGAAATAACCG--CCACAAAATAGTGA------AA-CA--ATGT----------TTAGAACAATA--AGTCCCTGTTAAGGTGTCATAGAATCATGTATCCGGATTATAAGTGACGACTTTAA-GTCACGTGGTATCAAACATAGG-ACCATAATATGCATCCACTTTC-TCATTAT---TGA--C--TATCAA---AAATGTGTTCGACCT-CTCCTGATGTTTATCTTGTCAATGTTATATA
gi|5 : TCATTGATCTATCCTGATTTTGAGTACGTTATAAGAAGTCTTTGTAAAGTTGCAA--AAT-GAGA--TAACTA--ACAGATAATGATGATA--------A--ACGTCAT-AA-CGTTTCGACCAAAA--TTTCGATATTAAGCCGCCACAAAATCAATTAGCCGGATTCCA--T-ATGGTTCTAA-A----ATA--ATCAAACACGGT-ATCATACTAATCATATACCTA-TTCATCATAGGTTATTT--T-TATAGGTACATGTGTTTTATGT-TTCAG-TTGTT---CTCGTTTTCGTCATATACataaaaaatattgatcccccttatcagcatgggatatttttagtcagaccagcgttttaaatgtacggtagtgtttccaccattaatggtgtaatgtaacattgctacgtttatcatcatgtattatattcactttatgagaccggtca
gi|5 : aTTTCGTCAGCGGCATTGTAGATT-TTT-CAGAAGTACACTTTATATGT-AAGATTTTATGCGT--TTATAA--T--------------TAATGCTGT--------AAT-GTAGATTAGGTGTGTTTATCATTGTGCA-TT-ATGTCACCATTGTAT-GGAGACTGGTCAatcaggattttcgtcagcggcattgtagatttttcagaagtacactttatatgtaagattttatgcgtttataattaatgctgtaatgtagattaggtgtgtttatcattgtgcattatgtcaccattgtatggagactggtca
gi|6 : atcattgatctatcctgattttgagtacgttataagaagtctttgtaaagttgcaaaatgagataactaacagataatgatgataaacgtcataacgtttcgaccaaaatttcgatattaagccgccacaaaatcaattagccggattccatatggttctaaaataatcaaacacggtatcatactaatcatatacctattcatcataggttatttttataggtacatgtgttttatgtttcagttgttctcgttttcgtcatatacatcaggatCTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAAT
gi|7 : TTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATT
gi|8 : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAAT
gi|9 : ATGGCTACA------AACTGATTCATCTTAATGTACAGATAACATCCCCTCATATATAGGAG--TAAACGTACG-TAGTCTTTTTTTTTTTTGGAGTAGAAATATCACATG---CACTCATTGTTAAACTTA-CGTATTTACAATCGATGTTTGACCACCTGTGGAATA-A-C-GATCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATATTGATCCCCCTTATCAGCATGGAATATCTTTATTCAGAACAGCGTTTTAAATACACGATAGCGTTTTCACCATTAATGTTGTAATGTAATAATGCTAC
Unaligned ( gi|16 ): TTTACGTTTACTGGGTTACTAATGGAGATACACATTATTTGTGTTGCCCATATCATTCCAATGCCA
Unaligned ( gi|17 ): AATCTGGTATGGACGCTTGATTATCACCCAAGTTACATCAACATATGACCACCT
Alignments
lowQualScore : 11 1 1 2222 111 44444444444 111 444444 1111 11 333 222222 222222 44444444 2222 111 1111111111111 11 1 222 11 111111 33333333 11 22222 111111111 1111 1111111 22222222222222222222 222222222 111 333333333 2222 2222222 11 111 111 1 11 88888888888888888888888888888888888 11 2222 111 1 22 1 11 1 1 1 1 11 1 1 1 11 1 1 11 1 222 11 11
lowQualScore : 2 3 3 3 2 33 0 3 3 2 0 1111 777 3 77777777777 777 2 3 3 2 2 000000 0 1 1 7777 5555 99 111 666666 1 1 777777 1 0 1 33333333 0 0 2222 1 0 6 6 000 5 9999999999999 555 11 8 1 0 1 4 555 11 777777 44444444 44 1 0 1 1 6 99 6 55 99 1 1 1 66666 5 77 000000000 4444 0 99 1 1 0 1 66 6 3 1 8 1 1 5555555 22222222222222222222 1 22 1 1 8 555555555 0 333 1 1 1 333333333 2 2 2 8888 3 3 6666666 1 77 8 99 8 5 222 777 0 33 0 88888888888888888888888888888888888 7 33 1 1111 111 999 0 0 11 2 5 22 88 5 5 1 5 5 88 5 1 5 5 1 66 5 5 1 1 88 5 111 1 88 1 1 88 1
lowQualScore : . . . . . .. . . . . . .... ... . ........... ... . . . . . ...... . . . .... .... .. ... ...... . . ...... . . . ........ . . .... . . . . ... . ............. ... .. . . . . . ... .. ...... ........ .. . . . . . .. . .. .. . . . ..... . .. ......... .... . .. . . . . .. . . . . . . ....... .................... . .. . . . ......... . ... . . . ......... . . . .... . . ....... . .. . .. . . ... ... . .. . ................................... . .. . .... ... ... . . .. . . .. .. . . . . . .. . . . . . .. . . . . .. . ... . .. . . .. .
lowQualScore : 5 2 2 2 5 88 0 2 2 5 0 2222 555 2 55555555555 555 5 2 2 5 5 444444 6 0 0 6666 2222 44 222 222222 4 4 222222 4 8 0 88888888 2 8 2222 0 7 7 7 222 2 8888888888888 444 00 0 0 4 0 6 000 00 444444 88888888 88 0 7 0 0 4 22 7 88 22 0 4 3 00000 7 99 999999999 9999 4 00 0 0 7 0 77 7 8 4 0 4 4 2222222 44444444444444444444 8 22 0 0 0 444444444 8 444 0 0 0 777777777 0 0 0 3333 0 0 7777777 0 00 0 00 0 0 000 555 0 88 2 88888888888888888888888888888888888 0 88 2 2222 000 000 2 0 88 5 5 00 00 5 5 0 5 5 55 5 0 0 5 0 55 5 5 0 0 55 5 000 0 55 0 0 55 0
consensus : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA-TGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGAGAC-CCGAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATT-A-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGAT-AATTTGTNCTNCGTGCGCT-GGTG--TT--AC-ATTTT---T----ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCTANCTTGTTTTTGTTATATAAT-CATTTNAAGTTTC-TCAGC--CAACGTGNATTTNTCA----TACNCTTTNTAAGG-TNTAAGATTTNATCNGCGGCATTGTA-ATT--T-CTGTAGATGTATTCTTCAAATGNN-AGA---TA-GTGT--TTGT--------A---T-----TAG---TGT--------AATAATAG--TAAGTTTGTT----ATTGCG-A-TTGATATCAGCGTTG-TATT-GGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
Reference ( family-1649 ) : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACACTGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGAGAC-CTGAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATT-A-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGAT-AATTTGTACTNCGCGCG---GGTG--TT--AC-ATTTT---T----ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCCAACTTGTTTTTGTTATATANTNCNTTTNAAGNTTCCTCNGC-CCAACCTGCATTTGTTA----TACTTTTTTTAAGGNNNNAAGATTTNATCNGCGGCATTGCA-ATT--T-CTGTAGATGTATTCTTCAAATGNN-AGA---TA-GTGT--TTGT--------A---T-----TAG---TGT--------AATAATAG--TAAGTTTGTT----ATTGCG-A-TTGATATCAGCGTTG-TATTTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
gi|1 : CTTGATTATCATTAGTTGGAA--TATA--AATCATCG--TTTG-TAGCT-TAATTTCATAATTTACAGAAAACGTTTACATTTC-CTCTAGTAC-GCGTAATCTTCCAGACGTTTTCCATCATTGTAAGA----AACAAGTAAATAGCAGTGAAATAAAATT--GTGAGGCATTCTGTTTGTTGTATTTTTTTTCATTCTG----GTTAAATTTG-TATTTACTGTCACTTTA-GTGGAC-ACAT-GCATAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATTGCTA------GAAATTGATTCAAGTTAATGGACAG----CGTT-----GTGT--AGAACACTGGATGT-TGGT-GAATTTGACTGGTAGGAA--AGGAATTTCACTTGCAA----GAGTATCAAACCT-TAGTATTGACATTCAGTATTTGACAACGCTT-GAATT-A-G-GATAAA---AATCG-TAT-GTAAT--TTTTGCT-AATGTGTACTTCGCGCG---GGTG--TT--AA-ATTTT--------ACAAAGAAGCAAATATATCACTCATACACACTCATTGTTATATCCAAAGTTTGTTTAAATTATAGGAAGTGTGCATCAAGTTGCAA--AAACAAGA--TAACTG--ACACAGAATATTAATA-AATAG-TA--ACGTCGT-AATCG-TTAGAATAATT--TACCCTTGTTAAAATTTCGGAGAATCAAGTCTCTTGAGTCCAAGTGGTGGTTCTAA-GTCATGTGACAACAAGCACAAT-ATCATTCAGTTCATTCACTTATTT-ATTAT---TTG--T--T-GAAA---AAATGCATTTAATGT-TTCCT-CTGTCCAACCTGTATTTGTTATATATTTTTTTTCAAGATT----AA----AANNNNNNNNNNNNN----NNNNNNNNNNNNGATGAAAAAATTTGATCCGCAGCATTGCA-ATT--T-CTGTAGATGTATTTTTCAAATGGTTAGA---TA-GTGT--TTGTCCTCCACCA---TACCTGTAG---TGT--------AATGATAG--TAAGTTTGTT----ATTGCG-A-T-GATATCAGTGTTGATATT-GGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCACAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACTTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGAAAGCAATATAGAATATACGGAAAGTACACTAAATATCTTAGGAAAATATGTAGA-TTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTATAA-TTA-TTCAGTTATAAACTTATCT-AAGATTCAAAATTATATAAATTATAT
gi|1 : GCTCCAAACC--TATCTTT-GTAACAAT---GGTGAGACCTGT--TTGTGTAACCTGGGAT--AACAAGGTATCctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctccaaacctatctttgtaacaatggtgagacctgtttgtgtaacctgggataacaaggtatcga
gi|10 : cttgattatcattagttggaatataaatcatcgtttgtagcttaatttcataatttacagaaaacgtttacatttcctctagtacgcgtaatcttccagacgttttccatcattgtaagaaacaagtaaatagcagtgaaataaaattgtgaggcattctgtttgttgtattttttttcattctggttaaatttgtatttactgtcactttagtggacacatgcataattatccttatcatggtactgatcttagcatgtattgtccactttgattgctagaaattgattcaagttaatggacagcgttgtgtagaacactggatgttggtgaatttgactggtaggaaaggaatttcacttgcaagagtatcaaaccttagtattgacattcagtatttgacaacgcttgaattaggataaaaatcgtatgtaatttttgctaatgtgtacttcgcgcgggtgttaaattttacaaagaagcaaatatatcactcatacacactcattgttatatccaaagtttgtttaaattataggaagtgtgcatcaagttgcaaaaacaagataactgacacagaatattaataaatagtaacgtcgtaatcgttagaataatttacccttgttaaaatttcggagaatcaagtctcttgagtccaagtggtggttctaagtcatgtgacaacaagcacaatatcattcagttcattcacttatttattatttgttgaaaaaatgcatttaatgtttcctctgtccaacctgtatttgttatatattttttttcaagattaaaannnnnnnnnnnnnnnnnnnnnnnnngatgaaaaaatttgatccgcagcattgcaatttctgtagatgtatttttcaaatggttagatagtgtttgtcctccaccatacctgtagtgtaatgatagtaagtttgttattgcgatgatatcagtgttgatattggacaggtcagacaatttgtttaacacttaatcttgatatcactccacgccacagcaatttatggcacaatcttacaataaattagcattacttacttcgaacattgacttccttattattcaaagtttttagattacaatgctcctgacagaaagcaatatagaatatacggaaagtacactaaatatcttaggaaaatatgtagattcttaaaacaaaaacaaaaaaatcgatcgcttgaaatattataattattcagttataaacttatctaagattcaaaattatataaattatatctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTCAGGGCA--GGGCGTGTATT-GGCTTTGACTGGT--GAATTAGAATTTTCACATGAGga
gi|11 : TGTTGACAATCAGTATTTGACCACGCGT-GGATA-A-G-GGTTAA---ATTTGAG-T-GTAAT--TTCTGAT-AATTTGTACTTTGTGCG---CGTG--TT--AC-ATTTT---C----ACAAAGAAGC-ACTATTTCGTCCAcgagt
gi|12 : ttCCAAGTTTGTTTACTTTATAGGAATTGTACATGAGGTTGC-A--GAA-GAGAT-TTACTG--ATACATAGTATCAAT--A-CAG-TGCTACGTCGT-ATTTG-CTAAAACAAAA--TGCCGTTGTTAA
gi|13 : tCAATCAATATTTTACCACATGT-AAATTAA-G-GATCAATATATGCA-C-T-G---T--TTCTAAT-CATTTGTCCTACGAGTG---CTTG--TTTAAT-ATTTTTTGT----AGAAAGAAGAAACTATTTCGTCca
gi|14 : CACAGAATATTGAAACA-TAG-CA--ACGTCAG-AATAT-TTAGAACGATAATTATC--TGTTAAGGTGTCAGAGCACCATGTATCCGGATACCAAGTTGTGCATTTAA-GTCAC
gi|2 : AA--AAC-AAGA--TAACTG--ACACAGAATATTAA-A-A-TAGGTA--ACGTCGTTAATCA-TTAGAACAAAAA-TACCCTTGTTAAAATTTCGGAGA-TCAAGTCTCTGGATTTCAAGTG-TGGTTCTAAAGTCATGTAACAACAAGCAAAATCATCAATCAGTTCATTC--------CACTAC---TTA--N--N-NNNN---NNNNNNNNNNNNNNN-NNNNT-C------ATTTGTTTTTG--AAAGAATGCATTTAAAGTTTCCTCTGC-CCAACCTGCATTTGTTA----TACTTTTTTTAAAGATTTAAGATTTGATCCGCGGCATTGTA-ATT--T-CTGTAGATGTATTTTTCAAATGGT-AGA---TA-GTGT--TTGT------------T-----TAG---TGT--------AATAATAG--TAAGTTTGTT----ATTGCG-A-TTGATATCAGTGTTG-TATTTGGACAGGTCAGACAATTTGTT-AACACTTAATCTTGATATCACTCCACGCCCAAGTAATTTATGACACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAA--TTTTAGATTAC-ATGCTCCTGACAGGAAGCGATATAGAATATACGG-AAGTACACCAACTATCTTAGGAAAATATGTAGATTTCTTAAAAC-AAAAC--AAAAATCGATCGC-TGAAATATTTTAAGTTATTTCATTTAT-CACTTATCTAAAGATTCAAAA-TATATCAATTATATa
gi|2 : aattggcaagGCACCAAACCAATATCTTTTGTAATGATATGGAAGAGACCTGTATTTGTGTACTCTGTGATAAAAAAAGATATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgagcaccaaaccaatatcttttgtaatgatatggaagagacctgtatttgtgtactctgtgataaaaaaagatatccaa
gi|3 : aattggcaagaaaacaagataactgacacagaatattaaaataggtaacgtcgttaatcattagaacaaaaatacccttgttaaaatttcggagatcaagtctctggatttcaagtgtggttctaaagtcatgtaacaacaagcaaaatcatcaatcagttcattccactacttannnnnnnnnnnnnnnnnnnnnnnnntcatttgtttttgaaagaatgcatttaaagtttcctctgcccaacctgcatttgttatactttttttaaagatttaagatttgatccgcggcattgtaatttctgtagatgtatttttcaaatggtagatagtgtttgtttagtgtaataatagtaagtttgttattgcgattgatatcagtgttgtatttggacaggtcagacaatttgttaacacttaatcttgatatcactccacgcccaagtaatttatgacacaatcttacaataaattagcattacctacttcgaacattgacttccttattattcaaattttagattacatgctcctgacaggaagcgatatagaatatacggaagtacaccaactatcttaggaaaatatgtagatttcttaaaacaaaacaaaaatcgatcgctgaaatattttaagttatttcatttatcacttatctaaagattcaaaatatatcaattatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgaCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTTAGGACA--GGACGTGCGTT-GGCTTTGAGTGGTGA--ATTAGAATTTTCACATGAG----CGAGTGTCAAACGTATA-TATTCACAATCAATATTTGACAACGTGT-GAATT-A-AAGAT-AC---ATTCG-T-CAGCTAT--TTTTGGGGAAATGGT-CTACGTGCGCTAGCTGGATT--TC--TTTT---T----ACAAAGATGTGAGTGTTTTGTTCATACTCATTCATTGTTATATCCAAAGTTTGTTTACATTATAGGAAGTGTGTATGAAGCTGCAA--AAA-GAGA--TAACTGACACACACAAGAGTGATGCA-TTG-TA--AAGTTTG-AATGG-CTGCAACAA-A--CGCCTCTGTTAAGCTTCCAGAAAATCAAGTCTCCGGAGTTTAAACGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCGCATAATTCATTTA-TTACTTCATCAT---GTG--TAAT-TAAA---AAACATTTTTTATCTATTTCT-CTCCCTATCTT-TTTTTTTTAcaa
gi|3 : TTTCATTAGTAGCATTACA-GTTG-T-TTTTAGATATGTTCTTTAAATATG-AGA---TA-ATGTACTTTT--------ACCAT-----TAA---TGTGGCTATGTAACAATGG--TATTTTTATT----ATTGTG-AGTTG-TATTAACATTG-TATT--GACA--TCAGccacaacttgttagaaaactgttgactttcattagtagcattacagttgtttttagatatgttctttaaatatgagataatgtacttttaccattaatgtggctatgtaacaatggtatttttattattgtgagttgtattaacattgtattgacatcag
gi|4 : cactttgatggttatatgtagacatttattcattgtaatgggcagatatcattcctctgtatttaggacaggacgtgcgttggctttgagtggtgaattagaattttcacatgagcgagtgtcaaacgtatatattcacaatcaatatttgacaacgtgtgaattaaagatacattcgtcagctatttttggggaaatggtctacgtgcgctagctggatttctttttacaaagatgtgagtgttttgttcatactcattcattgttatatccaaagtttgtttacattataggaagtgtgtatgaagctgcaaaaagagataactgacacacacaagagtgatgcattgtaaagtttgaatggctgcaacaaacgcctctgttaagcttccagaaaatcaagtctccggagtttaaacgatggttctaagtcacgtaacatcaagcacaatatcgcataattcatttattacttcatcatgtgtaattaaaaaacattttttatctatttctctccctatcttttttttttaccacaacttgttagaaaactgttgacTTGATGGCTA------GAAACGCATTCACGGTAATGAACAG----------TTTATAC---GGGTA----ACTTA-GGTAGAATATGTCTATTGGAG--CAGTAATT--ACCTAGAAC-CTTGATGTTAAACTT-TTGTATTTACAATTAATATTTGACCACGTGT-AAATT-AAG-GATCAA-----TCT-T-T-GTACTAGTTCTAAC-AATTATTCCTGTGTGCGCT-GGTA--TT--ATTATTTT---TTTCTATAAAGAAGAAAGTATTTCATCCATTTTTGCTCATTGTTCTATACCAAGCTTGTTTACATTATGGGGTTTGTG---GAAGATGTAACGAAA-GAGAAATAACCG--CCACAAAATAGTGA------AA-CA--ATGT----------TTAGAACAATA--AGTCCCTGTTAAGGTGTCATAGAATCATGTATCCGGATTATAAGTGACGACTTTAA-GTCACGTGGTATCAAACATAGG-ACCATAATATGCATCCACTTTC-TCATTAT---TGA--C--TATCAA---AAATGTGTTCGACCT-CTCCTGATGTTTATCTTGTCAATGTTATATAAT
gi|5 : TCATTGATCTATCCTGATTTTGAGTACGTTATAAGAAGTCTTTGTAAAGTTGCAA--AAT-GAGA--TAACTA--ACAGATAA---TGATG-A-TA---A--ACGTCAT-AA-CGTTTCGACCAAAA--TTTCGATATTAAGCCGCCACAAAATCAATTAGCCGGATTCCA--T-ATGGTTCTAA-A----ATA--ATCAAACACGGT-ATCATACTAATCATATACCTA-TTCATCATAGGTTATTT--T-TATAGGTACATGTGTTTTATGT-TTCAG-TTGTT---CTCGTTTTCGTCATATA---CATCAGGATTTTCGTCAGCGGCATTGTAGATTTTTCAGAAGTACACTTTATA----TGTAAGATTTTAT--GCGT--TTATA-ATTAATGCTGTA-ATGTAaaaaaatattgatcccccttatcagcatgggatatttttagtcagaccagcgttttaaatgtacggtagtgtttccaccattaatggtgtaatgtaacattgctacgtttatcatcatgtattatattcactttatgagaccggtca
gi|5 : aTTTCGTCAGCGGCATTGTAGATT--T-TT-CAGAAGTACACTTTATATGTA-AGATTTTATGCGT--TTATA-------A---T-----TAATGCTGT--------AAT-GTAGATTAGGTGTGTTTATCATTGTGCA-TT-ATGTCACCATTG-TATGGAGACTGGTCAgattaggtgtgtttatcattgtgcattatgtcaccattgtatggagactggtca
gi|6 : atcattgatctatcctgattttgagtacgttataagaagtctttgtaaagttgcaaaatgagataactaacagataatgatgataaacgtcataacgtttcgaccaaaatttcgatattaagccgccacaaaatcaattagccggattccatatggttctaaaataatcaaacacggtatcatactaatcatatacctattcatcataggttatttttataggtacatgtgttttatgtttcagttgttctcgttttcgtcatatacatcaggatCTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAAT
gi|7 : TTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATT
gi|8 : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAAT
gi|9 : ATGGCTACA------AACTGATTCATCTTAATGTACAGATAACATCCCCTCATATATAGGAG--TAAACGTACG-TAGTCTTTTTTTTTTTTGGAGTAGAAATATCACATG---CACTCATTGTTAAACTTA-CGTATTTACAATCGATGTTTGACCACCTGTGGAATA-A-C-GATCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATATTGATCCCCCTTATCAGCATGGAATATCTTTATTCAGAACAGCGTTTTAAATACACGATAGCGTTTTCACCATTAATGTTGTAATGTAATAATGCTAC
Unaligned ( gi|16 ): TTTACGTTTACTGGGTTACTAATGGAGATACACATTATTTGTGTTGCCCATATCATTCCAATGCCA
Unaligned ( gi|17 ): AATCTGGTATGGACGCTTGATTATCACCCAAGTTACATCAACATATGACCACCT
Alignments
lowQualScore : 111111111111111111
lowQualScore : 11 1 1 2222 111 44444444444 111 444444 1111 11 22 222222 222222 4444444 2222 111 222222222222222222222 111 111111 11 33333 11 22222 111111111 1111 2222222 22222222222222222222 111111111 2222222 66666666666 2222 3333333 11 2222 1 11 000000000000000000 44444444 22 1 1 1 11 1 1 1 1 11 1 1 1 11 1 1 11 1 222 11 11
lowQualScore : 2 3 3 3 2 33 0 3 3 2 0 1111 777 3 77777777777 777 2 3 3 2 2 000000 0 1 1 7777 5555 99 3 88 666666 1 1 777777 1 0 1 2222222 0 2222 1 0 6 666 5 999999999999999999999 000 1 1 666666 99 44 44444 44 1 0 1 1 6 99 6 55 99 1 1 1 66666 5 77 000000000 4444 0 99 1 1 0 1 66 6 3 1 8 1 1 2222222 22222222222222222222 1 22 1 1 8 999999999 0 0000000 1 22222222222 2 1 1 8888 1 1 6666666 1 11 2 4444 2 0 3 22 88 333333333333333333 88888888 00 7 0 3 3 6 6 5 22 88 5 5 1 5 5 88 5 1 5 5 1 66 5 5 1 1 88 5 111 1 88 1 1 88 1
lowQualScore : . . . . . .. . . . . . .... ... . ........... ... . . . . . ...... . . . .... .... .. . .. ...... . . ...... . . . ....... . .... . . . ... . ..................... ... . . ...... .. .. ..... .. . . . . . .. . .. .. . . . ..... . .. ......... .... . .. . . . . .. . . . . . . ....... .................... . .. . . . ......... . ....... . ........... . . . .... . . ....... . .. . .... . . . .. .. .................. ........ .. . . . . . . . .. .. . . . . . .. . . . . . .. . . . . .. . ... . .. . . .. .
lowQualScore : 5 2 2 2 5 88 0 2 2 5 0 2222 555 2 55555555555 555 5 2 2 5 5 444444 6 0 0 6666 2222 44 2 44 222222 4 4 222222 4 8 0 0000000 8 2222 0 7 7 888 2 777777777777777777777 777 0 0 777777 22 55 88888 88 0 7 0 0 4 22 7 88 22 0 4 3 00000 7 99 999999999 9999 4 00 0 0 7 0 77 7 8 4 0 4 4 0000000 44444444444444444444 8 22 0 0 0 222222222 8 8888888 0 33333333333 0 0 0 3333 0 0 7777777 0 00 5 8888 5 7 3 00 33 333333333333333333 33333333 77 3 7 3 3 7 7 5 00 00 5 5 0 5 5 55 5 0 0 5 0 55 5 5 0 0 55 5 000 0 55 0 0 55 0
consensus : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA-TGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGNGAC-CGAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATTA-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGC-TGG--TG--TTAC-ATTTTTT---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCTATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-T-NTAAGATTTNATCCGCGGCATTGCAATTG-T-CTGTAGATGTATTTTTCAAAT-GTTAGATAGTGT--TTGT--------A---T-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
Reference ( family-1649 ) : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA-TGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGAGACCCGAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATTA-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTNCTNCGTGCGC-TGG--TG--TTAC-ATTTTT----ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCTANCTTGTTTTTGTTATATA-AT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-T-NTAAGATTTNATCNGCGGCATTGTAATT--T-CTGTAGATGTATTCTTCAAAT-GNNAGATAGTGT--TTGT--------A---T-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
gi|1 : CTTGATTATCATTAGTTGGAA--TATA--AATCATCG--TTTG-TAGCT-TAATTTCATAATTTACAGAAAACGTTTACATTTC-CTCTAGTAC-GCGTAATCTTCCAGACGTTTTCCATCATTGTAAGA----AACAAGTAAATAGCAGTGAAATAAAATT--GTGAGGCATTCTGTTTGTTGTATTTTTTTTCATTCTG----GTTAAATTTG-TATTTACTGTCACTTTA-GTGGAC-ACAT-GCATAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATTGCTA------GAAATTGATTCAAGTTAATGGACAG----CGTT-----GTGT--AGAACACTGGATGT-TGGT-GAATTTGACTGGTAGGAA--AGGAATTTCACTTGCAA---GAGTATCAAACCT-TAGTATTGACATTCAGTATTTGACAACGCTT-GAATTA-G-GATAAA---AATCG-TAT-GTAAT--TTTTGCTA--ATGTGTACTTCGCGCG---GG--TG--TTAA-ATTTT-----ACAAAGAAGCAAATATATCACTCATACACACTCATTGTTATATCCAAAGTTTGTTTAAATTATAGGAAGTGTGCATCAAGTTGCAA--AAACAAGA--TAACTG--ACACAGAATATTAATA-AATAG-TA--ACGTCGT-AATCG-TTAGAATAATT--TACCCTTGTTAAAATTTCGGAGAATCAAGTCTCTTGAGTCCAAGTGGTGGTTCTAA-GTCATGTGACAACAAGCACAAT-ATCATTCAGTTCATTCACTTA-TTTATTAT---TTG--T--T-GAAA---AAATGCATTTAATGT-TTCCT-CTGTCCAACCTGTATTTGTTATATATTT-TTTTTCAAGATT----AA-----AANNNNNNNNNNNNN----NNNNNNNNNNNNGA-TGAAAAAATTTGATCCGCAGCATTGCAATT--T-CTGTAGATGTATTTTTCAAATGGTTAGATAGTGT--TTGTCCTCCACCA---TACCTGTAGTGT--------AATGATAGTAAGTTTGTTATTGCGA--TGATATCAGTGTTGATA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCACAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACTTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGAAAGCAATATAGAATATACGGAAAGTACACTAAATATCTTAGGAAAATATGTAGA-TTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTATAA-TTA-TTCAGTTATAAACTTATCT-AAGATTCAAAATTATATAAATTATAT
gi|1 : GCTCCAAACC--TATCTTT-GTAACAAT---GGTGAGACCTGT--TTGTGTAACCTGGGAT--AACAAGGTATCctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctccaaacctatctttgtaacaatggtgagacctgtttgtgtaacctgggataacaaggtatcga
gi|10 : cttgattatcattagttggaatataaatcatcgtttgtagcttaatttcataatttacagaaaacgtttacatttcctctagtacgcgtaatcttccagacgttttccatcattgtaagaaacaagtaaatagcagtgaaataaaattgtgaggcattctgtttgttgtattttttttcattctggttaaatttgtatttactgtcactttagtggacacatgcataattatccttatcatggtactgatcttagcatgtattgtccactttgattgctagaaattgattcaagttaatggacagcgttgtgtagaacactggatgttggtgaatttgactggtaggaaaggaatttcacttgcaagagtatcaaaccttagtattgacattcagtatttgacaacgcttgaattaggataaaaatcgtatgtaatttttgctaatgtgtacttcgcgcgggtgttaaattttacaaagaagcaaatatatcactcatacacactcattgttatatccaaagtttgtttaaattataggaagtgtgcatcaagttgcaaaaacaagataactgacacagaatattaataaatagtaacgtcgtaatcgttagaataatttacccttgttaaaatttcggagaatcaagtctcttgagtccaagtggtggttctaagtcatgtgacaacaagcacaatatcattcagttcattcacttatttattatttgttgaaaaaatgcatttaatgtttcctctgtccaacctgtatttgttatatattttttttcaagattaaaannnnnnnnnnnnnnnnnnnnnnnnngatgaaaaaatttgatccgcagcattgcaatttctgtagatgtatttttcaaatggttagatagtgtttgtcctccaccatacctgtagtgtaatgatagtaagtttgttattgcgatgatatcagtgttgatattggacaggtcagacaatttgtttaacacttaatcttgatatcactccacgccacagcaatttatggcacaatcttacaataaattagcattacttacttcgaacattgacttccttattattcaaagtttttagattacaatgctcctgacagaaagcaatatagaatatacggaaagtacactaaatatcttaggaaaatatgtagattcttaaaacaaaaacaaaaaaatcgatcgcttgaaatattataattattcagttataaacttatctaagattcaaaattatataaattatatctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTCAGGGCA--GGGCGTGTATT-GGCTTTGACTGGT--GAATTAGAATTTTCACATGAG---CGAGTga
gi|11 : TGTTGACAATCAGTATTTGACCACGCGT-GGATAA-G-GGTTAA---ATTTGAG-T-GTAAT--TTCTGATA--ATTTGTACTTTGTGCGC---G--TG--TTAC-ATTTTC----ACAAAGAAGC-ACTATTTCGTCCA
gi|12 : ttCCAAGTTTGTTTACTTTATAGGAATTGTACATGAGGTTGC-A--GAA-GAGAT-TTACTG--ATACATAGTATCAAT--A-CAG-TGCTACGTCGT-ATTTG-CTAAAACAAAA--TGCCGTTGTTAA
gi|13 : tCAATCAATATTTTACCACATGT-AAATTAAG-GATCAATATATGCA-C-T-GT-----TTCTAATC--ATTTGTCCTACGAGTGC-TTG--TT--TAAT-ATTTTTTGT-AGAAAGAAGAAACTATTTCGTCca
gi|14 : CACAGAATATTGAAACA-TAG-CA--ACGTCAG-AATAT-TTAGAACGATAATTATC--TGTTAAGGTGTCAGAGCACCATGTATCCGGATACCAAGTTGTGCATTTAA-GTCAC
gi|2 : AA--AAC-AAGA--TAACTG--ACACAGAATATTAA-A-A-TAGGTA--ACGTCGTTAATCA-TTAGAACAAAAA-TACCCTTGTTAAAATTTCGGAGA-TCAAGTCTCTGGATTTCAAGTG-TGGTTCTAAAGTCATGTAACAACAAGCAAAATCATCAATCAGTTCATTC--------CACTAC---TTA--N--N-NNNN---NNNNNNNNNNNNNNN-NNNNT-C------ATTTGTTTTTG--AAAGA-ATGCATTTAAAGTTTCCTCTGC--CCAACCTGCATTTGTTA----TACTTTTTTTAAAGAT-TTAAGATTTGATCCGCGGCATTGTAATT--T-CTGTAGATGTATTTTTCAAAT-GGTAGATAGTGT--TTGT------------T-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGTGTTG-TATTTGGACAGGTCAGACAATTTG-TTAACACTTAATCTTGATATCACTCCACGCCCAAGTAATTTATGACACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAA--TTTTAGATTAC-ATGCTCCTGACAGGAAGCGATATAGAATATACGG-AAGTACACCAACTATCTTAGGAAAATATGTAGATTTCTTAAAAC-AAAAC--AAAAATCGATCGC-TGAAATATTTTAAGTTATTTCATTTAT-CACTTATCTAAAGATTCAAAA-TATATCAATTATATa
gi|2 : aattggcaagGCACCAAACCAATATCTTTTGTAATGATATGGAAGAGACCTGTATTTGTGTACTCTGTGATAAAAAAAGATATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgagcaccaaaccaatatcttttgtaatgatatggaagagacctgtatttgtgtactctgtgataaaaaaagatatccaa
gi|3 : aattggcaagaaaacaagataactgacacagaatattaaaataggtaacgtcgttaatcattagaacaaaaatacccttgttaaaatttcggagatcaagtctctggatttcaagtgtggttctaaagtcatgtaacaacaagcaaaatcatcaatcagttcattccactacttannnnnnnnnnnnnnnnnnnnnnnnntcatttgtttttgaaagaatgcatttaaagtttcctctgcccaacctgcatttgttatactttttttaaagatttaagatttgatccgcggcattgtaatttctgtagatgtatttttcaaatggtagatagtgtttgtttagtgtaataatagtaagtttgttattgcgattgatatcagtgttgtatttggacaggtcagacaatttgttaacacttaatcttgatatcactccacgcccaagtaatttatgacacaatcttacaataaattagcattacctacttcgaacattgacttccttattattcaaattttagattacatgctcctgacaggaagcgatatagaatatacggaagtacaccaactatcttaggaaaatatgtagatttcttaaaacaaaacaaaaatcgatcgctgaaatattttaagttatttcatttatcacttatctaaagattcaaaatatatcaattatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgaCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTTAGGACA--GGACGTGCGTT-GGCTTTGAGTGGTGA--ATTAGAATTTTCACATGAG---CGAGTGTCAAACGTATA-TATTCACAATCAATATTTGACAACGTGT-GAATTA-AAGAT-AC---ATTCG-T-CAGCTAT--TTTTGGGG--AAATGGTCTACGTGCGC-TAGC-TGGATTTC--TTTTT----ACAAAGATGTGAGTGTTTTGTTCATACTCATTCATTGTTATATCCAAAGTTTGTTTACATTATAGGAAGTGTGTATGAAGCTGCAA--AAA-GAGA--TAACTGACACACACAAGAGTGATGCA-TTG-TA--AAGTTTG-AATGG-CTGCAACAA-A--CGCCTCTGTTAAGCTTCCAGAAAATCAAGTCTCCGGAGTTTAAACGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCGCATAATTCATTTA-TTACTTCATCAT---GTG--TAAT-TAAA---AAACATTTTTTATCTATTTCT-CTCCCTATCTT-TTTTTTTTAcaa
gi|3 : TTTCATTAGTAGCATTACAGTTG-T-TTTTAGATATGTTCTTTAAAT-ATGAGATAATGTACTTTT--------ACCAT-----TAATGTGGCTATGTAACAATGGTATTTTTATTATTGTGAGTTG-TATTAACATTG-TA-TT-GACA--TCAGccacaacttgttagaaaactgttgactttcattagtagcattacagttgtttttagatatgttctttaaatatgagataatgtacttttaccattaatgtggctatgtaacaatggtatttttattattgtgagttgtattaacattgtattgacatcag
gi|4 : cactttgatggttatatgtagacatttattcattgtaatgggcagatatcattcctctgtatttaggacaggacgtgcgttggctttgagtggtgaattagaattttcacatgagcgagtgtcaaacgtatatattcacaatcaatatttgacaacgtgtgaattaaagatacattcgtcagctatttttggggaaatggtctacgtgcgctagctggatttctttttacaaagatgtgagtgttttgttcatactcattcattgttatatccaaagtttgtttacattataggaagtgtgtatgaagctgcaaaaagagataactgacacacacaagagtgatgcattgtaaagtttgaatggctgcaacaaacgcctctgttaagcttccagaaaatcaagtctccggagtttaaacgatggttctaagtcacgtaacatcaagcacaatatcgcataattcatttattacttcatcatgtgtaattaaaaaacattttttatctatttctctccctatcttttttttttaccacaacttgttagaaaactgttgacTTGATGGCTA------GAAACGCATTCACGGTAATGAACAG----------TTTATAC---GGGTA----ACTTA-GGTAGAATATGTCTATTGGAG--CAGTAATT--ACCTAGAACCTTGATGTTAAACTT-TTGTATTTACAATTAATATTTGACCACGTGT-AAATTAAG-GATCAA-----TCT-T-T-GTACTAGTTCTAACA--ATTATTCCTGTGTGCGC-TGG--TA--TTATTATTTTTTTCTATAAAGAAGAAAGTATTTCATCCATTTTTGCTCATTGTTCTATACCAAGCTTGTTTACATTATGGGGTTTGTG---GAAGATGTAACGAAA-GAGAAATAACCG--CCACAAAATAGTGA------AA-CA--ATGT----------TTAGAACAATA--AGTCCCTGTTAAGGTGTCATAGAATCATGTATCCGGATTATAAGTGACGACTTTAA-GTCACGTGGTATCAAACATAGG-ACCATAATATGCATCCACTTTC-TCATTAT---TGA--C--TATCAA---AAATGTGTTCGACCT-CTCCTGATGTTTATCTTGTCAATGTTATATA-AT-
gi|5 : TCATTGATCTATCCTGATTTTGAGTACGTTATAAGAAGTCTTTGTAAAGTTGCAA--AAT-GAGA--TAACTA--ACAGATAA---TGATG-A-TA---A--ACGTCAT-AA-CGTTTCGACCAAAA--TTTCGATATTAAGCCGCCACAAAATCAATTAGCCGGATTCCA--T-ATGGTTCTAA-A----ATA--ATCAAACACGGT-ATCATACTAATCATATACCTA-TTCATCATAGGTTATTT--T-TATAGGTACATGTGTTTTATGT-TTCAG-TTGT---TCTCGTTTTCGTCATATACAT-CA---GGATTTTCGTCAGCGGC-ATTGTAGATTTTTCAGAAGTACACTTTATA----T-GTAAGATTTTAT--GCGT--TTATAATTAATGCTGTA-ATGTAaaaaaatattgatcccccttatcagcatgggatatttttagtcagaccagcgttttaaatgtacggtagtgtttccaccattaatggtgtaatgtaacattgctacgtttatcatcatgtattatattcactttatgagaccggtca
gi|6 : aCTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATgattaggtgtgtttatcattgtgcattatgtcaccattgtatggagactggtca
gi|7 : TTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATT
gi|8 : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAAT
gi|9 : ATGGCTACA------AACTGATTCATCTTAATGTACAGATAACATCCCCTCATATATAGGA-G-TAAACGTACG-TAGTCTTTTTTTTTTTTGGAGTAGAAATATCACATGC-ACTC-ATTGTTAAACTTA-CGTATTTACAATCGATGTTTGACCACCTGTGGAATAA-C-GATCA-------CT-G-T-GTGCG--TTCTTGTCGTATTTGTCGTATGTGCGCATGGATTA--TTA--ATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATATTGATCCCCCTTATCAGCATGGAATATCTTTATTCAGAACAGCGTTTTAAATACACGATAGCGTTTTCACCATTAATGTTGTAATGTAATAATGCTAC
Unaligned ( gi|16 ): TTTACGTTTACTGGGTTACTAATGGAGATACACATTATTTGTGTTGCCCATATCATTCCAATGCCA
Unaligned ( gi|17 ): AATCTGGTATGGACGCTTGATTATCACCCAAGTTACATCAACATATGACCACCT
Alignments
lowQualScore : 11 1 1 2222 111 44444444444 111 444444 1111 11 22 222222 222222 3333333 2222 111 222222222222222222222 111 111111 1111 2222222 11 22222 111111111 1111 2222222 22222222222222222222 1111111 1111111 66666666666 2222 3333333 1 3333 1111 11 88888888888888888888888888888888 22 1 1 1 11 1 1 1 1 11 1 1 1 11 1 1 11 1 222 11 11
lowQualScore : 2 3 3 3 2 33 0 3 3 2 0 1111 777 3 77777777777 777 2 3 3 2 2 000000 0 1 1 7777 5555 99 3 88 666666 1 1 777777 1 0 1 7777777 5 0 2222 1 0 6 6 000 5 999999999999999999999 000 1 1 666666 99 6666 4444444 44 1 0 1 1 6 99 6 55 99 1 1 1 66666 5 77 000000000 4444 0 99 1 1 0 1 66 6 3 1 8 1 1 2222222 22222222222222222222 1 22 1 1 8 7777777 0 8888888 1 22222222222 2 1 1 8888 1 1 6666666 1 0 0 0000 2 3 0 0 0000 3 33 0 33333333333333333333333333333333 00 7 0 3 3 6 6 5 22 88 5 5 1 5 5 88 5 1 5 5 1 66 5 5 1 1 88 5 111 1 88 1 1 88 1
lowQualScore : . . . . . .. . . . . . .... ... . ........... ... . . . . . ...... . . . .... .... .. . .. ...... . . ...... . . . ....... . . .... . . . . ... . ..................... ... . . ...... .. .... ....... .. . . . . . .. . .. .. . . . ..... . .. ......... .... . .. . . . . .. . . . . . . ....... .................... . .. . . . ....... . ....... . ........... . . . .... . . ....... . . . .... . . . . .... . .. . ................................ .. . . . . . . . .. .. . . . . . .. . . . . . .. . . . . .. . ... . .. . . .. .
lowQualScore : 5 2 2 2 5 88 0 2 2 5 0 2222 555 2 55555555555 555 5 2 2 5 5 444444 6 0 0 6666 2222 44 2 44 222222 4 4 222222 4 8 0 2222222 0 8 2222 0 7 7 7 222 2 777777777777777777777 777 0 0 777777 22 8888 6666666 88 0 7 0 0 4 22 7 88 22 0 4 3 00000 7 99 999999999 9999 4 00 0 0 7 0 77 7 8 4 0 4 4 0000000 44444444444444444444 8 22 0 0 0 6666666 8 3333333 0 33333333333 0 0 0 3333 0 0 7777777 0 2 5 0000 5 2 8 2 5555 2 88 2 22222222222222222222222222222222 77 3 7 3 3 7 7 5 00 00 5 5 0 5 5 55 5 0 0 5 0 55 5 5 0 0 55 5 000 0 55 0 0 55 0
consensus : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA-TGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGNGACC--GAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATT-A-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGC-TGG--TG--TTAC-ATTTTT--T---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCTATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-T-NTAAGATTTNATCCGCGGCATTGCAATT-GT-CTGTAGATGTATTTTTCAAAT-GTTAGATAGTGT--TTGTC-------A---T-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
Reference ( family-1649 ) : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA-TGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGNGACC--GAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATT-A-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGC-TGG--TG--TTAC-ATTTTT--T---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCTATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-T-NTAAGATTTNATCCGCGGCATTGCAATT-GT-CTGTAGATGTATTTTTCAAAT-GTTAGATAGTGT--TTGT--------A---T-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
gi|1 : CTTGATTATCATTAGTTGGAA--TATA--AATCATCG--TTTG-TAGCT-TAATTTCATAATTTACAGAAAACGTTTACATTTC-CTCTAGTAC-GCGTAATCTTCCAGACGTTTTCCATCATTGTAAGA----AACAAGTAAATAGCAGTGAAATAAAATT--GTGAGGCATTCTGTTTGTTGTATTTTTTTTCATTCTG----GTTAAATTTG-TATTTACTGTCACTTTA-GTGGAC-ACAT-GCATAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATTGCTA------GAAATTGATTCAAGTTAATGGACAG----CGTT-----GTGT--AGAACACTGGATGT-TGGT-GAATTTGACTGGTAGGAA--AGGAATTTCACTTGCAA----GAGTATCAAACCT-TAGTATTGACATTCAGTATTTGACAACGCTT-GAATT-A-G-GATAAA---AATCG-TAT-GTAAT--TTTTGCTA--ATGTGTACTTCGCGCG---GG--TG--TTAA-ATTTT-------ACAAAGAAGCAAATATATCACTCATACACACTCATTGTTATATCCAAAGTTTGTTTAAATTATAGGAAGTGTGCATCAAGTTGCAA--AAACAAGA--TAACTG--ACACAGAATATTAATA-AATAG-TA--ACGTCGT-AATCG-TTAGAATAATT--TACCCTTGTTAAAATTTCGGAGAATCAAGTCTCTTGAGTCCAAGTGGTGGTTCTAA-GTCATGTGACAACAAGCACAAT-ATCATTCAGTTCATTCACTTA-TTTATTAT---TTG--T--T-GAAA---AAATGCATTTAATGT-TTCCT-CTGTCCAACCTGTATTTGTTATATATTT-TTTTTCAAGATT----AA-----AANNNNNNNNNNNNN----NNNNNNNNNNNNGA-TGAAAAAATTTGATCCGCAGCATTGCAATT--T-CTGTAGATGTATTTTTCAAATGGTTAGATAGTGT--TTGTCCTCCACCA---TACCTGTAGTGT--------AATGATAGTAAGTTTGTTATTGCGA--TGATATCAGTGTTGATA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCACAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACTTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGAAAGCAATATAGAATATACGGAAAGTACACTAAATATCTTAGGAAAATATGTAGA-TTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTATAA-TTA-TTCAGTTATAAACTTATCT-AAGATTCAAAATTATATAAATTATAT
gi|1 : GCTCCAAACC--TATCTTT-GTAACAAT---GGTGAGACCTGT--TTGTGTAACCTGGGAT--AACAAGGTATCctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctccaaacctatctttgtaacaatggtgagacctgtttgtgtaacctgggataacaaggtatcga
gi|10 : cttgattatcattagttggaatataaatcatcgtttgtagcttaatttcataatttacagaaaacgtttacatttcctctagtacgcgtaatcttccagacgttttccatcattgtaagaaacaagtaaatagcagtgaaataaaattgtgaggcattctgtttgttgtattttttttcattctggttaaatttgtatttactgtcactttagtggacacatgcataattatccttatcatggtactgatcttagcatgtattgtccactttgattgctagaaattgattcaagttaatggacagcgttgtgtagaacactggatgttggtgaatttgactggtaggaaaggaatttcacttgcaagagtatcaaaccttagtattgacattcagtatttgacaacgcttgaattaggataaaaatcgtatgtaatttttgctaatgtgtacttcgcgcgggtgttaaattttacaaagaagcaaatatatcactcatacacactcattgttatatccaaagtttgtttaaattataggaagtgtgcatcaagttgcaaaaacaagataactgacacagaatattaataaatagtaacgtcgtaatcgttagaataatttacccttgttaaaatttcggagaatcaagtctcttgagtccaagtggtggttctaagtcatgtgacaacaagcacaatatcattcagttcattcacttatttattatttgttgaaaaaatgcatttaatgtttcctctgtccaacctgtatttgttatatattttttttcaagattaaaannnnnnnnnnnnnnnnnnnnnnnnngatgaaaaaatttgatccgcagcattgcaatttctgtagatgtatttttcaaatggttagatagtgtttgtcctccaccatacctgtagtgtaatgatagtaagtttgttattgcgatgatatcagtgttgatattggacaggtcagacaatttgtttaacacttaatcttgatatcactccacgccacagcaatttatggcacaatcttacaataaattagcattacttacttcgaacattgacttccttattattcaaagtttttagattacaatgctcctgacagaaagcaatatagaatatacggaaagtacactaaatatcttaggaaaatatgtagattcttaaaacaaaaacaaaaaaatcgatcgcttgaaatattataattattcagttataaacttatctaagattcaaaattatataaattatatctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTCAGGGCA--GGGCGTGTATT-GGCTTTGACTGGT--GAATTAGAATTTTCACATGAG--C--GAGTga
gi|11 : TGTTGACAATCAGTATTTGACCACGCGT-GGATA-A-G-GGTTAA---ATTTGAG-T-GTAAT--TTCTGATA--ATTTGTACTTTGTGCGC---G--TG--TTAC-A-TTTT--C---ACAAAGAAGC-ACTATTTCGTCCA
gi|12 : ttCCAAGTTTGTTTACTTTATAGGAATTGTACATGAGGTTGC-A--GAA-GAGAT-TTACTG--ATACATAGTATCAAT--A-CAG-TGCTACGTCGT-ATTTG-CTAAAACAAAA--TGCCGTTGTTAA
gi|13 : tCAATCAATATTTTACCACATGT-AAATTAA-G-GATCAATATATGCA-C-T-G---T--TTCTAATC--ATTTGTCCTACGAGTGC-TTG--TT--TAAT-ATTTTTTGT---AGAAAGAAGAAACTATTTCGTCca
gi|14 : CACAGAATATTGAAACA-TAG-CA--ACGTCAG-AATAT-TTAGAACGATAATTATC--TGTTAAGGTGTCAGAGCACCATGTATCCGGATACCAAGTTGTGCATTTAA-GTCAC
gi|2 : AA--AAC-AAGA--TAACTG--ACACAGAATATTAA-A-A-TAGGTA--ACGTCGTTAATCA-TTAGAACAAAAA-TACCCTTGTTAAAATTTCGGAGA-TCAAGTCTCTGGATTTCAAGTG-TGGTTCTAAAGTCATGTAACAACAAGCAAAATCATCAATCAGTTCATTC--------CACTAC---TTA--N--N-NNNN---NNNNNNNNNNNNNNN-NNNNT-C-----AT-TTGTTTTTG--AAAGA-ATGCATTTAAAGTTTCCTCTGC--CCAACCTGCATTTGTTA----TACTTTTTTTAAAGAT-TTAAGATTTGATCCGCGGCATTGTAATT--T-CTGTAGATGTATTTTTCAAAT-GGTAGATAGTGT--TTGT------------T-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGTGTTG-TATTTGGACAGGTCAGACAATTTG-TTAACACTTAATCTTGATATCACTCCACGCCCAAGTAATTTATGACACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAA--TTTTAGATTAC-ATGCTCCTGACAGGAAGCGATATAGAATATACGG-AAGTACACCAACTATCTTAGGAAAATATGTAGATTTCTTAAAAC-AAAAC--AAAAATCGATCGC-TGAAATATTTTAAGTTATTTCATTTAT-CACTTATCTAAAGATTCAAAA-TATATCAATTATATa
gi|2 : aattggcaagGCACCAAACCAATATCTTTTGTAATGATATGGAAGAGACCTGTATTTGTGTACTCTGTGATAAAAAAAGATATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgagcaccaaaccaatatcttttgtaatgatatggaagagacctgtatttgtgtactctgtgataaaaaaagatatccaa
gi|3 : aattggcaagaaaacaagataactgacacagaatattaaaataggtaacgtcgttaatcattagaacaaaaatacccttgttaaaatttcggagatcaagtctctggatttcaagtgtggttctaaagtcatgtaacaacaagcaaaatcatcaatcagttcattccactacttannnnnnnnnnnnnnnnnnnnnnnnntcatttgtttttgaaagaatgcatttaaagtttcctctgcccaacctgcatttgttatactttttttaaagatttaagatttgatccgcggcattgtaatttctgtagatgtatttttcaaatggtagatagtgtttgtttagtgtaataatagtaagtttgttattgcgattgatatcagtgttgtatttggacaggtcagacaatttgttaacacttaatcttgatatcactccacgcccaagtaatttatgacacaatcttacaataaattagcattacctacttcgaacattgacttccttattattcaaattttagattacatgctcctgacaggaagcgatatagaatatacggaagtacaccaactatcttaggaaaatatgtagatttcttaaaacaaaacaaaaatcgatcgctgaaatattttaagttatttcatttatcacttatctaaagattcaaaatatatcaattatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgaCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTTAGGACA--GGACGTGCGTT-GGCTTTGAGTGGTGA--ATTAGAATTTTCACATGAG--C--GAGTGTCAAACGTATA-TATTCACAATCAATATTTGACAACGTGT-GAATT-A-AAGAT-AC---ATTCG-T-CAGCTAT--TTTTGGGG--AAATGGTCTACGTGCGC-TAGC-TGGATTTC---TTTT--T---ACAAAGATGTGAGTGTTTTGTTCATACTCATTCATTGTTATATCCAAAGTTTGTTTACATTATAGGAAGTGTGTATGAAGCTGCAA--AAA-GAGA--TAACTGACACACACAAGAGTGATGCA-TTG-TA--AAGTTTG-AATGG-CTGCAACAA-A--CGCCTCTGTTAAGCTTCCAGAAAATCAAGTCTCCGGAGTTTAAACGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCGCATAATTCATTTA-TTACTTCATCAT---GTG--TAAT-TAAA---AAACATTTTTTATCTATTTCT-CTCCCTATCTT-TTTTTTTTAcaa
gi|3 : TTTCATTAGTAGCATTACAGTT-GT-TTTTAGATATGTTCTTTAAAT-ATGAGATAATGTACTTTT--------ACCAT-----TAATGTGGCTATGTAACAATGGTATTTTTATTATTGTGAGTTG-TATTAACATTG-TA-TT-GACA--TCAGccacaacttgttagaaaactgttgactttcattagtagcattacagttgtttttagatatgttctttaaatatgagataatgtacttttaccattaatgtggctatgtaacaatggtatttttattattgtgagttgtattaacattgtattgacatcag
gi|4 : cactttgatggttatatgtagacatttattcattgtaatgggcagatatcattcctctgtatttaggacaggacgtgcgttggctttgagtggtgaattagaattttcacatgagcgagtgtcaaacgtatatattcacaatcaatatttgacaacgtgtgaattaaagatacattcgtcagctatttttggggaaatggtctacgtgcgctagctggatttctttttacaaagatgtgagtgttttgttcatactcattcattgttatatccaaagtttgtttacattataggaagtgtgtatgaagctgcaaaaagagataactgacacacacaagagtgatgcattgtaaagtttgaatggctgcaacaaacgcctctgttaagcttccagaaaatcaagtctccggagtttaaacgatggttctaagtcacgtaacatcaagcacaatatcgcataattcatttattacttcatcatgtgtaattaaaaaacattttttatctatttctctccctatcttttttttttaccacaacttgttagaaaactgttgacTTGATGGCTA------GAAACGCATTCACGGTAATGAACAG----------TTTATAC---GGGTA----ACTTA-GGTAGAATATGTCTATTGGAG--CAGTAATT--ACCTAGAACCTTGA-TGTTAAACTT-TTGTATTTACAATTAATATTTGACCACGTGT-AAATT-AAG-GATCAA-----TCT-T-T-GTACTAGTTCTAACA--ATTATTCCTGTGTGCGC-TGG--TA--TTATTATTTTT--TTCTATAAAGAAGAAAGTATTTCATCCATTTTTGCTCATTGTTCTATACCAAGCTTGTTTACATTATGGGGTTTGTG---GAAGATGTAACGAAA-GAGAAATAACCG--CCACAAAATAGTGA------AA-CA--ATGT----------TTAGAACAATA--AGTCCCTGTTAAGGTGTCATAGAATCATGTATCCGGATTATAAGTGACGACTTTAA-GTCACGTGGTATCAAACATAGG-ACCATAATATGCATCCACTTTC-TCATTAT---TGA--C--TATCAA---AAATGTGTTCGACCT-CTCCTGATGTTTATCTTGTCAATGTTATATA
gi|5 : TCATTGATCTATCCTGATTTTGAGTACGTTATAAGAAGTCTTTGTAAAGTTGCAA--AAT-GAGA--TAACTA--ACAGATAA---TGATG-A-TA---A--ACGTCAT-AA-CGTTTCGACCAAAA--TTTCGATATTAAGCCGCCACAAAATCAATTAGCCGGATTCCA--T-ATGGTTCTAA-A----ATA--ATCAAACACGGT-ATCATACTAATCATATACCTA-TTCATCATAGGTTATTT--T-TATAGGTACATGTGTTTTATGT-TTCAG-TTGT---TCTCGTTTTCGTCATATACAT-CA---GGATTTTCGTCAGCGGC-ATTGTAGATTTTTCAGAAGTACACTTTATA----T-GTAAGATTTTATGCGT----TTATAATTAATGCTGTA-ATGTA------GA----TTAGGT-GTGT--TTATC-------A---T-----T-GTGC--------ATTAataaaaaatattgatcccccttatcagcatgggatatttttagtcagaccagcgttttaaatgtacggtagtgtttccaccattaatggtgtaatgtaacattgctacgtttatcatcatgtattatattcactttatgagaccggtca
gi|6 : aCTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATtgtcaccattgtatggagactggtca
gi|7 : TTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATT
gi|8 : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAAT
gi|9 : ATGGCTACA------AACTGATTCATCTTAATGTACAGATAACATCCCCTCATATATAGGA-G-TAAACGTACG-TAGTCTTTTTTTTTTTTGGAGTAGAAATATCACATGC-ACT--CATTGTTAAACTTA-CGTATTTACAATCGATGTTTGACCACCTGTGGAATA-A-C-GATCA-------CT-G-T-GTGCG--TTCTTGTCGTATTTGTCGTATGTGCGCATGGATTA--TTA--ATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATATTGATCCCCCTTATCAGCATGGAATATCTTTATTCAGAACAGCGTTTTAAATACACGATAGCGTTTTCACCATTAATGTTGTAATGTAATAATGCTAC
Unaligned ( gi|16 ): TTTACGTTTACTGGGTTACTAATGGAGATACACATTATTTGTGTTGCCCATATCATTCCAATGCCA
Unaligned ( gi|17 ): AATCTGGTATGGACGCTTGATTATCACCCAAGTTACATCAACATATGACCACCT
Alignments
lowQualScore : 11 1 1 2222 111 44444444444 111 444444 1111 11 22 222222 222222 3333333 2222 111 222222222222222222222 111 111111 1111 222 11 22222 111111111 1111 1111111 22222222222222222222 1111111 1111111 66666666666 2222 3333 1 1 3333 1111 2222 44444444444444444444444444444 22 1 1 1 11 1 1 1 1 11 1 1 1 11 1 1 11 1 222 11 11
lowQualScore : 2 3 3 3 2 33 0 3 3 2 0 1111 777 3 77777777777 777 2 3 3 2 2 000000 0 1 1 7777 5555 99 3 88 666666 1 1 777777 1 0 1 7777777 5 0 2222 1 0 6 666 5 999999999999999999999 000 1 1 666666 99 6666 0 555 44 1 0 1 1 6 99 6 55 99 1 1 1 66666 5 77 000000000 4444 0 99 1 1 0 1 66 6 3 1 8 1 1 5555555 22222222222222222222 1 22 1 1 8 7777777 0 8888888 1 22222222222 2 1 1 8888 1 1 1111 1 0 1 0 0 0000 2 3 0 0 0000 3 1111 88888888888888888888888888888 00 7 0 3 3 6 6 5 22 88 5 5 1 5 5 88 5 1 5 5 1 66 5 5 1 1 88 5 111 1 88 1 1 88 1
lowQualScore : . . . . . .. . . . . . .... ... . ........... ... . . . . . ...... . . . .... .... .. . .. ...... . . ...... . . . ....... . . .... . . . ... . ..................... ... . . ...... .. .... . ... .. . . . . . .. . .. .. . . . ..... . .. ......... .... . .. . . . . .. . . . . . . ....... .................... . .. . . . ....... . ....... . ........... . . . .... . . .... . . . . . .... . . . . .... . .... ............................. .. . . . . . . . .. .. . . . . . .. . . . . . .. . . . . .. . ... . .. . . .. .
lowQualScore : 5 2 2 2 5 88 0 2 2 5 0 2222 555 2 55555555555 555 5 2 2 5 5 444444 6 0 0 6666 2222 44 2 44 222222 4 4 222222 4 8 0 2222222 0 8 2222 0 7 7 888 2 777777777777777777777 777 0 0 777777 22 8888 8 000 88 0 7 0 0 4 22 7 88 22 0 4 3 00000 7 99 999999999 9999 4 00 0 0 7 0 77 7 8 4 0 4 4 2222222 44444444444444444444 8 22 0 0 0 6666666 8 3333333 0 33333333333 0 0 0 3333 0 0 3333 0 0 0 2 5 0000 5 2 8 2 5555 2 2222 22222222222222222222222222222 77 3 7 3 3 7 7 5 00 00 5 5 0 5 5 55 5 0 0 5 0 55 5 5 0 0 55 5 000 0 55 0 0 55 0
consensus : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA-TGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGNGACC--GAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATTA-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGC-TGG--TG--TTAC-ATTTTTT---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCTATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-TGTAAGA-TTTNATCCGCGGCATTGCAATT-GT-CTGTAGATGTATTTTTCAAATG-TTAGATAGTGT----TTGTC-------AT-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
Reference ( family-1649 ) : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA-TGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGNGACC--GAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATTA-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGC-TGG--TG--TTAC-ATTTTTT---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCTATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-TNTAAGA-TTTNATCCGCGGCATTGCAATT-GT-CTGTAGATGTATTTTTCAAATG-TTAGATAGTGT----TTGTC-------AT-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
gi|1 : CTTGATTATCATTAGTTGGAA--TATA--AATCATCG--TTTG-TAGCT-TAATTTCATAATTTACAGAAAACGTTTACATTTC-CTCTAGTAC-GCGTAATCTTCCAGACGTTTTCCATCATTGTAAGA----AACAAGTAAATAGCAGTGAAATAAAATT--GTGAGGCATTCTGTTTGTTGTATTTTTTTTCATTCTG----GTTAAATTTG-TATTTACTGTCACTTTA-GTGGAC-ACAT-GCATAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATTGCTA------GAAATTGATTCAAGTTAATGGACAG----CGTT-----GTGT--AGAACACTGGATGT-TGGT-GAATTTGACTGGTAGGAA--AGGAATTTCACTTGCAA----GAGTATCAAACCT-TAGTATTGACATTCAGTATTTGACAACGCTT-GAATTA-G-GATAAA---AATCG-TAT-GTAAT--TTTTGCTA--ATGTGTACTTCGCGCG---GG--TG--TTAA-ATTTT-----ACAAAGAAGCAAATATATCACTCATACACACTCATTGTTATATCCAAAGTTTGTTTAAATTATAGGAAGTGTGCATCAAGTTGCAA--AAACAAGA--TAACTG--ACACAGAATATTAATA-AATAG-TA--ACGTCGT-AATCG-TTAGAATAATT--TACCCTTGTTAAAATTTCGGAGAATCAAGTCTCTTGAGTCCAAGTGGTGGTTCTAA-GTCATGTGACAACAAGCACAAT-ATCATTCAGTTCATTCACTTATTT-ATTAT---TTG--T--T-GAAA---AAATGCATTTAATGT-TTCCT-CTGTCCAACCTGTATTTGTTATATATTT-TTTTTCAAGATT----AA-----AANNNNNNNNNNNNN----NNNNNNNNNNNNGA-TGAAAAAATTTGATCCGCAGCATTGCAATT--T-CTGTAGATGTATTTTTCAAATGGTTAGATAGTGT----TTGTCCTCCACCATACCTGTAGTGT--------AATGATAGTAAGTTTGTTATTGCGA--TGATATCAGTGTTGATA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCACAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACTTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGAAAGCAATATAGAATATACGGAAAGTACACTAAATATCTTAGGAAAATATGTAGA-TTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTATAA-TTA-TTCAGTTATAAACTTATCT-AAGATTCAAAATTATATAAATTATAT
gi|1 : GCTCCAAACC--TATCTTT-GTAACAAT---GGTGAGACCTGT--TTGTGTAACCTGGGAT--AACAAGGTATCctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctccaaacctatctttgtaacaatggtgagacctgtttgtgtaacctgggataacaaggtatcga
gi|10 : cttgattatcattagttggaatataaatcatcgtttgtagcttaatttcataatttacagaaaacgtttacatttcctctagtacgcgtaatcttccagacgttttccatcattgtaagaaacaagtaaatagcagtgaaataaaattgtgaggcattctgtttgttgtattttttttcattctggttaaatttgtatttactgtcactttagtggacacatgcataattatccttatcatggtactgatcttagcatgtattgtccactttgattgctagaaattgattcaagttaatggacagcgttgtgtagaacactggatgttggtgaatttgactggtaggaaaggaatttcacttgcaagagtatcaaaccttagtattgacattcagtatttgacaacgcttgaattaggataaaaatcgtatgtaatttttgctaatgtgtacttcgcgcgggtgttaaattttacaaagaagcaaatatatcactcatacacactcattgttatatccaaagtttgtttaaattataggaagtgtgcatcaagttgcaaaaacaagataactgacacagaatattaataaatagtaacgtcgtaatcgttagaataatttacccttgttaaaatttcggagaatcaagtctcttgagtccaagtggtggttctaagtcatgtgacaacaagcacaatatcattcagttcattcacttatttattatttgttgaaaaaatgcatttaatgtttcctctgtccaacctgtatttgttatatattttttttcaagattaaaannnnnnnnnnnnnnnnnnnnnnnnngatgaaaaaatttgatccgcagcattgcaatttctgtagatgtatttttcaaatggttagatagtgtttgtcctccaccatacctgtagtgtaatgatagtaagtttgttattgcgatgatatcagtgttgatattggacaggtcagacaatttgtttaacacttaatcttgatatcactccacgccacagcaatttatggcacaatcttacaataaattagcattacttacttcgaacattgacttccttattattcaaagtttttagattacaatgctcctgacagaaagcaatatagaatatacggaaagtacactaaatatcttaggaaaatatgtagattcttaaaacaaaaacaaaaaaatcgatcgcttgaaatattataattattcagttataaacttatctaagattcaaaattatataaattatatctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTCAGGGCA--GGGCGTGTATT-GGCTTTGACTGGT--GAATTAGAATTTTCACATGAG--C--GAGTga
gi|11 : TGTTGACAATCAGTATTTGACCACGCGT-GGATAA-G-GGTTAA---ATTTGAG-T-GTAAT--TTCTGATA--ATTTGTACTTTGTGCGC---G--TG--TTAC-A-TTTTC---ACAAAGAAGC-ACTATTTCGTCCA
gi|12 : ttCCAAGTTTGTTTACTTTATAGGAATTGTACATGAGGTTGC-A--GAA-GAGAT-TTACTG--ATACATAGTATCAAT--A-CAG-TGCTACGTCGT-ATTTG-CTAAAACAAAA--TGCCGTTGTTAA
gi|13 : tCAATCAATATTTTACCACATGT-AAATTAAG-GATCAATATATGCA-C-T-GT-----TTCTAATC--ATTTGTCCTACGAGTGC-TTG--TT--TAAT-ATTTTTTGT-AGAAAGAAGAAACTATTTCGTCca
gi|14 : CACAGAATATTGAAACA-TAG-CA--ACGTCAG-AATAT-TTAGAACGATAATTATC--TGTTAAGGTGTCAGAGCACCATGTATCCGGATACCAAGTTGTGCATTTAA-GTCAC
gi|2 : AA--AAC-AAGA--TAACTG--ACACAGAATATTAA-A-A-TAGGTA--ACGTCGTTAATCA-TTAGAACAAAAA-TACCCTTGTTAAAATTTCGGAGA-TCAAGTCTCTGGATTTCAAGTG-TGGTTCTAAAGTCATGTAACAACAAGCAAAATCATCAATCAGTTCATTC--------CACTAC---TTA--N--N-NNNN---NNNNNNNNNNNNNNN-NNNNT-C-----AT-TTGTTTTTG--AAAGA-ATGCATTTAAAGTTTCCTCTGC--CCAACCTGCATTTGTTA----TACTTTTTTTAAAGATTTAAGA-TTTGATCCGCGGCATTGTAATT--T-CTGTAGATGTATTTTTCAAATG-GTAGATAGTGT----TTGT---------T-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGTGTTG-TATTTGGACAGGTCAGACAATTTG-TTAACACTTAATCTTGATATCACTCCACGCCCAAGTAATTTATGACACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAA--TTTTAGATTAC-ATGCTCCTGACAGGAAGCGATATAGAATATACGG-AAGTACACCAACTATCTTAGGAAAATATGTAGATTTCTTAAAAC-AAAAC--AAAAATCGATCGC-TGAAATATTTTAAGTTATTTCATTTAT-CACTTATCTAAAGATTCAAAA-TATATCAATTATATa
gi|2 : aattggcaagGCACCAAACCAATATCTTTTGTAATGATATGGAAGAGACCTGTATTTGTGTACTCTGTGATAAAAAAAGATATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgagcaccaaaccaatatcttttgtaatgatatggaagagacctgtatttgtgtactctgtgataaaaaaagatatccaa
gi|3 : aattggcaagaaaacaagataactgacacagaatattaaaataggtaacgtcgttaatcattagaacaaaaatacccttgttaaaatttcggagatcaagtctctggatttcaagtgtggttctaaagtcatgtaacaacaagcaaaatcatcaatcagttcattccactacttannnnnnnnnnnnnnnnnnnnnnnnntcatttgtttttgaaagaatgcatttaaagtttcctctgcccaacctgcatttgttatactttttttaaagatttaagatttgatccgcggcattgtaatttctgtagatgtatttttcaaatggtagatagtgtttgtttagtgtaataatagtaagtttgttattgcgattgatatcagtgttgtatttggacaggtcagacaatttgttaacacttaatcttgatatcactccacgcccaagtaatttatgacacaatcttacaataaattagcattacctacttcgaacattgacttccttattattcaaattttagattacatgctcctgacaggaagcgatatagaatatacggaagtacaccaactatcttaggaaaatatgtagatttcttaaaacaaaacaaaaatcgatcgctgaaatattttaagttatttcatttatcacttatctaaagattcaaaatatatcaattatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgaCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTTAGGACA--GGACGTGCGTT-GGCTTTGAGTGGTGA--ATTAGAATTTTCACATGAG--C--GAGTGTCAAACGTATA-TATTCACAATCAATATTTGACAACGTGT-GAATTA-AAGAT-AC---ATTCG-T-CAGCTAT--TTTTGGGG--AAATGGTCTACGTGCGC-TAGC-TGGATTTC---TTTTT---ACAAAGATGTGAGTGTTTTGTTCATACTCATTCATTGTTATATCCAAAGTTTGTTTACATTATAGGAAGTGTGTATGAAGCTGCAA--AAA-GAGA--TAACTGACACACACAAGAGTGATGCA-TTG-TA--AAGTTTG-AATGG-CTGCAACAA-A--CGCCTCTGTTAAGCTTCCAGAAAATCAAGTCTCCGGAGTTTAAACGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCGCATAATTCATTTA-TTACTTCATCAT---GTG--TAAT-TAAA---AAACATTTTTTATCTATTTCT-CTCCCTATCTT-TTTTTTTTAcaa
gi|3 : -TTTCATTAGTAGCATTACAGTT-GT-TTTTAGATATGTTCTTTAAATA-TGAGATAATGTACTTTTACC-------AT-----TAATGTGGCTATGTAACAATGGTATTTTTATTATTGTGAGTTG-TATTAACATTG-TA-TT-GACA--TCAGccacaacttgttagaaaactgttgactttcattagtagcattacagttgtttttagatatgttctttaaatatgagataatgtacttttaccattaatgtggctatgtaacaatggtatttttattattgtgagttgtattaacattgtattgacatcag
gi|4 : cactttgatggttatatgtagacatttattcattgtaatgggcagatatcattcctctgtatttaggacaggacgtgcgttggctttgagtggtgaattagaattttcacatgagcgagtgtcaaacgtatatattcacaatcaatatttgacaacgtgtgaattaaagatacattcgtcagctatttttggggaaatggtctacgtgcgctagctggatttctttttacaaagatgtgagtgttttgttcatactcattcattgttatatccaaagtttgtttacattataggaagtgtgtatgaagctgcaaaaagagataactgacacacacaagagtgatgcattgtaaagtttgaatggctgcaacaaacgcctctgttaagcttccagaaaatcaagtctccggagtttaaacgatggttctaagtcacgtaacatcaagcacaatatcgcataattcatttattacttcatcatgtgtaattaaaaaacattttttatctatttctctccctatcttttttttttaccacaacttgttagaaaactgttgacTTGATGGCTA------GAAACGCATTCACGGTAATGAACAG----------TTTATAC---GGGTA----ACTTA-GGTAGAATATGTCTATTGGAG--CAGTAATT--ACCTAGAACCTTGA-TGTTAAACTT-TTGTATTTACAATTAATATTTGACCACGTGT-AAATTAAG-GATCAA-----TCT-T-T-GTACTAGTTCTAACA--ATTATTCCTGTGTGCGC-TGG--TA--TTATTATTTTTTTCTATAAAGAAGAAAGTATTTCATCCATTTTTGCTCATTGTTCTATACCAAGCTTGTTTACATTATGGGGTTTGTG---GAAGATGTAACGAAA-GAGAAATAACCG--CCACAAAATAGTGA------AA-CA--ATGT----------TTAGAACAATA--AGTCCCTGTTAAGGTGTCATAGAATCATGTATCCGGATTATAAGTGACGACTTTAA-GTCACGTGGTATCAAACATAGG-ACCATAATATGCATCCACTTTC-TCATTAT---TGA--C--TATCAA---AAATGTGTTCGACCT-CTCCTGATGTTTATCTTGTCAATGTTATATA
gi|5 : TCATTGATCTATCCTGATTTTGAGTACGTTATAAGAAGTCTTTGTAAAGTTGCAA--AAT-GAGA--TAACTA--ACAGATAA---TGATG-A-TA---A--ACGTCAT-AA-CGTTTCGACCAAAA--TTTCGATATTAAGCCGCCACAAAATCAATTAGCCGGATTCCA--T-ATGGTTCTAA-A----ATA--ATCAAACACGGT-ATCATACTAATCATATACCTA-TTCATCATAGGTTATTT--T-TATAGGTACATGTGTTTTATGT-TTCAG-TTGT---TCTCGTTTTCGTCATATACAT-CA---GGATTTTCGTCAGCGGC-ATTGTAGATTTTTCAGAAGTACACTTTATA----TGTAAGA-TTTTATGCGT----TTATAATTAATGCTGTA-ATGTA------GA----TTAGGT-GTGT----TTATC-------AT-----T-GTGC--------ATTAataaaaaatattgatcccccttatcagcatgggatatttttagtcagaccagcgttttaaatgtacggtagtgtttccaccattaatggtgtaatgtaacattgctacgtttatcatcatgtattatattcactttatgagaccggtca
gi|6 : aCTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATtgtcaccattgtatggagactggtca
gi|7 : TTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATT
gi|8 : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAAT
gi|9 : ATGGCTACA------AACTGATTCATCTTAATGTACAGATAACATCCCCTCATATATAGGA-G-TAAACGTACG-TAGTCTTTTTTTTTTTTGGAGTAGAAATATCACATGC-ACT--CATTGTTAAACTTA-CGTATTTACAATCGATGTTTGACCACCTGTGGAATAA-C-GATCA-------CT-G-T-GTGCG--TTCTTGTCGTATTTGTCGTATGTGCGCATGGATTA--TTA--ATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATATTGATCCCCCTTATCAGCATGGAATATCTTTATTCAGAACAGCGTTTTAAATACACGATAGCGTTTTCACCATTAATGTTGTAATGTAATAATGCTAC
Unaligned ( gi|16 ): TTTACGTTTACTGGGTTACTAATGGAGATACACATTATTTGTGTTGCCCATATCATTCCAATGCCA
Unaligned ( gi|17 ): AATCTGGTATGGACGCTTGATTATCACCCAAGTTACATCAACATATGACCACCT
Alignments
lowQualScore : 11 1 1 2222 111 44444444444 111 444444 1111 11 22 222222 222222 3333333 2222 111 222222222222222222222 111 111111 1111 222 11 22222 111111111 1111 2222222 22222222222222222222 1111111 1111111 66666666666 2222 3333333 1 3333 1111 2222 44444444444444444444444444444 22 1 1 1 11 1 1 1 1 11 1 1 1 11 1 1 11 1 222 11 11
lowQualScore : 2 3 3 3 2 33 0 3 3 2 0 1111 777 3 77777777777 777 2 3 3 2 2 000000 0 1 1 7777 5555 99 3 88 666666 1 1 777777 1 0 1 7777777 5 0 2222 1 0 6 666 5 999999999999999999999 000 1 1 666666 99 6666 0 555 44 1 0 1 1 6 99 6 55 99 1 1 1 66666 5 77 000000000 4444 0 99 1 1 0 1 66 6 3 1 8 1 1 2222222 22222222222222222222 1 22 1 1 8 7777777 0 8888888 1 22222222222 2 1 1 8888 1 1 4444444 1 0 0 0000 2 3 0 0 0000 3 1111 88888888888888888888888888888 00 7 0 3 3 6 6 5 22 88 5 5 1 5 5 88 5 1 5 5 1 66 5 5 1 1 88 5 111 1 88 1 1 88 1
lowQualScore : . . . . . .. . . . . . .... ... . ........... ... . . . . . ...... . . . .... .... .. . .. ...... . . ...... . . . ....... . . .... . . . ... . ..................... ... . . ...... .. .... . ... .. . . . . . .. . .. .. . . . ..... . .. ......... .... . .. . . . . .. . . . . . . ....... .................... . .. . . . ....... . ....... . ........... . . . .... . . ....... . . . .... . . . . .... . .... ............................. .. . . . . . . . .. .. . . . . . .. . . . . . .. . . . . .. . ... . .. . . .. .
lowQualScore : 5 2 2 2 5 88 0 2 2 5 0 2222 555 2 55555555555 555 5 2 2 5 5 444444 6 0 0 6666 2222 44 2 44 222222 4 4 222222 4 8 0 2222222 0 8 2222 0 7 7 888 2 777777777777777777777 777 0 0 777777 22 8888 8 000 88 0 7 0 0 4 22 7 88 22 0 4 3 00000 7 99 999999999 9999 4 00 0 0 7 0 77 7 8 4 0 4 4 0000000 44444444444444444444 8 22 0 0 0 6666666 8 3333333 0 33333333333 0 0 0 3333 0 0 0000000 0 2 5 0000 5 2 8 2 5555 2 2222 22222222222222222222222222222 77 3 7 3 3 7 7 5 00 00 5 5 0 5 5 55 5 0 0 5 0 55 5 5 0 0 55 5 000 0 55 0 0 55 0
consensus : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA-TGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGNGACC--GAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATTA-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGC-TGG--TG--TTAC-ATTTTTT---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCTATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-TG-TAAGATTTNATCCGCGGCATTGCAATT-GT-CTGTAGATGTATTTTTCAAAT-GTTAGATAGTGT----TTGT-------CAT-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
Reference ( family-1649 ) : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA-TGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGNGACC--GAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATTA-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGC-TGG--TG--TTAC-ATTTTTT---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCTATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-TG-TAAGATTTNATCCGCGGCATTGCAATT-GT-CTGTAGATGTATTTTTCAAAT-GTTAGATAGTGT----TTGT-------CAT-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
gi|1 : CTTGATTATCATTAGTTGGAA--TATA--AATCATCG--TTTG-TAGCT-TAATTTCATAATTTACAGAAAACGTTTACATTTC-CTCTAGTAC-GCGTAATCTTCCAGACGTTTTCCATCATTGTAAGA----AACAAGTAAATAGCAGTGAAATAAAATT--GTGAGGCATTCTGTTTGTTGTATTTTTTTTCATTCTG----GTTAAATTTG-TATTTACTGTCACTTTA-GTGGAC-ACAT-GCATAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATTGCTA------GAAATTGATTCAAGTTAATGGACAG----CGTT-----GTGT--AGAACACTGGATGT-TGGT-GAATTTGACTGGTAGGAA--AGGAATTTCACTTGCAA----GAGTATCAAACCT-TAGTATTGACATTCAGTATTTGACAACGCTT-GAATTA-G-GATAAA---AATCG-TAT-GTAAT--TTTTGCTA--ATGTGTACTTCGCGCG---GG--TG--TTAA-ATTTT-----ACAAAGAAGCAAATATATCACTCATACACACTCATTGTTATATCCAAAGTTTGTTTAAATTATAGGAAGTGTGCATCAAGTTGCAA--AAACAAGA--TAACTG--ACACAGAATATTAATA-AATAG-TA--ACGTCGT-AATCG-TTAGAATAATT--TACCCTTGTTAAAATTTCGGAGAATCAAGTCTCTTGAGTCCAAGTGGTGGTTCTAA-GTCATGTGACAACAAGCACAAT-ATCATTCAGTTCATTCACTTA-TTTATTAT---TTG--T--T-GAAA---AAATGCATTTAATGT-TTCCT-CTGTCCAACCTGTATTTGTTATATATTT-TTTTTCAAGATT----AA-----AANNNNNNNNNNNNN----NNNNNNNNNNNNGA-TGAAAAAATTTGATCCGCAGCATTGCAATT--T-CTGTAGATGTATTTTTCAAATGGTTAGATAGTGT----TTGTCCTCCACCATACCTGTAGTGT--------AATGATAGTAAGTTTGTTATTGCGA--TGATATCAGTGTTGATA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCACAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACTTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGAAAGCAATATAGAATATACGGAAAGTACACTAAATATCTTAGGAAAATATGTAGA-TTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTATAA-TTA-TTCAGTTATAAACTTATCT-AAGATTCAAAATTATATAAATTATAT
gi|1 : GCTCCAAACC--TATCTTT-GTAACAAT---GGTGAGACCTGT--TTGTGTAACCTGGGAT--AACAAGGTATCctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctccaaacctatctttgtaacaatggtgagacctgtttgtgtaacctgggataacaaggtatcga
gi|10 : cttgattatcattagttggaatataaatcatcgtttgtagcttaatttcataatttacagaaaacgtttacatttcctctagtacgcgtaatcttccagacgttttccatcattgtaagaaacaagtaaatagcagtgaaataaaattgtgaggcattctgtttgttgtattttttttcattctggttaaatttgtatttactgtcactttagtggacacatgcataattatccttatcatggtactgatcttagcatgtattgtccactttgattgctagaaattgattcaagttaatggacagcgttgtgtagaacactggatgttggtgaatttgactggtaggaaaggaatttcacttgcaagagtatcaaaccttagtattgacattcagtatttgacaacgcttgaattaggataaaaatcgtatgtaatttttgctaatgtgtacttcgcgcgggtgttaaattttacaaagaagcaaatatatcactcatacacactcattgttatatccaaagtttgtttaaattataggaagtgtgcatcaagttgcaaaaacaagataactgacacagaatattaataaatagtaacgtcgtaatcgttagaataatttacccttgttaaaatttcggagaatcaagtctcttgagtccaagtggtggttctaagtcatgtgacaacaagcacaatatcattcagttcattcacttatttattatttgttgaaaaaatgcatttaatgtttcctctgtccaacctgtatttgttatatattttttttcaagattaaaannnnnnnnnnnnnnnnnnnnnnnnngatgaaaaaatttgatccgcagcattgcaatttctgtagatgtatttttcaaatggttagatagtgtttgtcctccaccatacctgtagtgtaatgatagtaagtttgttattgcgatgatatcagtgttgatattggacaggtcagacaatttgtttaacacttaatcttgatatcactccacgccacagcaatttatggcacaatcttacaataaattagcattacttacttcgaacattgacttccttattattcaaagtttttagattacaatgctcctgacagaaagcaatatagaatatacggaaagtacactaaatatcttaggaaaatatgtagattcttaaaacaaaaacaaaaaaatcgatcgcttgaaatattataattattcagttataaacttatctaagattcaaaattatataaattatatctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTCAGGGCA--GGGCGTGTATT-GGCTTTGACTGGT--GAATTAGAATTTTCACATGAG--C--GAGTga
gi|11 : TGTTGACAATCAGTATTTGACCACGCGT-GGATAA-G-GGTTAA---ATTTGAG-T-GTAAT--TTCTGATA--ATTTGTACTTTGTGCGC---G--TG--TTAC-A-TTTTC---ACAAAGAAGC-ACTATTTCGTCCA
gi|12 : ttCCAAGTTTGTTTACTTTATAGGAATTGTACATGAGGTTGC-A--GAA-GAGAT-TTACTG--ATACATAGTATCAAT--A-CAG-TGCTACGTCGT-ATTTG-CTAAAACAAAA--TGCCGTTGTTAA
gi|13 : tCAATCAATATTTTACCACATGT-AAATTAAG-GATCAATATATGCA-C-T-GT-----TTCTAATC--ATTTGTCCTACGAGTGC-TTG--TT--TAAT-ATTTTTTGT-AGAAAGAAGAAACTATTTCGTCca
gi|14 : CACAGAATATTGAAACA-TAG-CA--ACGTCAG-AATAT-TTAGAACGATAATTATC--TGTTAAGGTGTCAGAGCACCATGTATCCGGATACCAAGTTGTGCATTTAA-GTCAC
gi|2 : AA--AAC-AAGA--TAACTG--ACACAGAATATTAA-A-A-TAGGTA--ACGTCGTTAATCA-TTAGAACAAAAA-TACCCTTGTTAAAATTTCGGAGA-TCAAGTCTCTGGATTTCAAGTG-TGGTTCTAAAGTCATGTAACAACAAGCAAAATCATCAATCAGTTCATTC--------CACTAC---TTA--N--N-NNNN---NNNNNNNNNNNNNNN-NNNNT-C-----AT-TTGTTTTTG--AAAGA-ATGCATTTAAAGTTTCCTCTGC--CCAACCTGCATTTGTTA----TACTTTTTTTAAAGATT-TAAGATTTGATCCGCGGCATTGTAATT--T-CTGTAGATGTATTTTTCAAAT-GGTAGATAGTGT----TTGT---------T-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGTGTTG-TATTTGGACAGGTCAGACAATTTG-TTAACACTTAATCTTGATATCACTCCACGCCCAAGTAATTTATGACACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAA--TTTTAGATTAC-ATGCTCCTGACAGGAAGCGATATAGAATATACGG-AAGTACACCAACTATCTTAGGAAAATATGTAGATTTCTTAAAAC-AAAAC--AAAAATCGATCGC-TGAAATATTTTAAGTTATTTCATTTAT-CACTTATCTAAAGATTCAAAA-TATATCAATTATATa
gi|2 : aattggcaagGCACCAAACCAATATCTTTTGTAATGATATGGAAGAGACCTGTATTTGTGTACTCTGTGATAAAAAAAGATATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgagcaccaaaccaatatcttttgtaatgatatggaagagacctgtatttgtgtactctgtgataaaaaaagatatccaa
gi|3 : aattggcaagaaaacaagataactgacacagaatattaaaataggtaacgtcgttaatcattagaacaaaaatacccttgttaaaatttcggagatcaagtctctggatttcaagtgtggttctaaagtcatgtaacaacaagcaaaatcatcaatcagttcattccactacttannnnnnnnnnnnnnnnnnnnnnnnntcatttgtttttgaaagaatgcatttaaagtttcctctgcccaacctgcatttgttatactttttttaaagatttaagatttgatccgcggcattgtaatttctgtagatgtatttttcaaatggtagatagtgtttgtttagtgtaataatagtaagtttgttattgcgattgatatcagtgttgtatttggacaggtcagacaatttgttaacacttaatcttgatatcactccacgcccaagtaatttatgacacaatcttacaataaattagcattacctacttcgaacattgacttccttattattcaaattttagattacatgctcctgacaggaagcgatatagaatatacggaagtacaccaactatcttaggaaaatatgtagatttcttaaaacaaaacaaaaatcgatcgctgaaatattttaagttatttcatttatcacttatctaaagattcaaaatatatcaattatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgaCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTTAGGACA--GGACGTGCGTT-GGCTTTGAGTGGTGA--ATTAGAATTTTCACATGAG--C--GAGTGTCAAACGTATA-TATTCACAATCAATATTTGACAACGTGT-GAATTA-AAGAT-AC---ATTCG-T-CAGCTAT--TTTTGGGG--AAATGGTCTACGTGCGC-TAGC-TGGATTTC---TTTTT---ACAAAGATGTGAGTGTTTTGTTCATACTCATTCATTGTTATATCCAAAGTTTGTTTACATTATAGGAAGTGTGTATGAAGCTGCAA--AAA-GAGA--TAACTGACACACACAAGAGTGATGCA-TTG-TA--AAGTTTG-AATGG-CTGCAACAA-A--CGCCTCTGTTAAGCTTCCAGAAAATCAAGTCTCCGGAGTTTAAACGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCGCATAATTCATTTA-TTACTTCATCAT---GTG--TAAT-TAAA---AAACATTTTTTATCTATTTCT-CTCCCTATCTT-TTTTTTTTAcaa
gi|3 : TTTCATTAGTAGCATTACAGTT-GT-TTTTAGATATGTTCTTTAAAT-ATGAGATAATGTACTTTTAC-------CAT-----TAATGTGGCTATGTAACAATGGTATTTTTATTATTGTGAGTTG-TATTAACATTG-TA-TT-GACA--TCAGccacaacttgttagaaaactgttgactttcattagtagcattacagttgtttttagatatgttctttaaatatgagataatgtacttttaccattaatgtggctatgtaacaatggtatttttattattgtgagttgtattaacattgtattgacatcag
gi|4 : cactttgatggttatatgtagacatttattcattgtaatgggcagatatcattcctctgtatttaggacaggacgtgcgttggctttgagtggtgaattagaattttcacatgagcgagtgtcaaacgtatatattcacaatcaatatttgacaacgtgtgaattaaagatacattcgtcagctatttttggggaaatggtctacgtgcgctagctggatttctttttacaaagatgtgagtgttttgttcatactcattcattgttatatccaaagtttgtttacattataggaagtgtgtatgaagctgcaaaaagagataactgacacacacaagagtgatgcattgtaaagtttgaatggctgcaacaaacgcctctgttaagcttccagaaaatcaagtctccggagtttaaacgatggttctaagtcacgtaacatcaagcacaatatcgcataattcatttattacttcatcatgtgtaattaaaaaacattttttatctatttctctccctatcttttttttttaccacaacttgttagaaaactgttgacTTGATGGCTA------GAAACGCATTCACGGTAATGAACAG----------TTTATAC---GGGTA----ACTTA-GGTAGAATATGTCTATTGGAG--CAGTAATT--ACCTAGAACCTTGA-TGTTAAACTT-TTGTATTTACAATTAATATTTGACCACGTGT-AAATTAAG-GATCAA-----TCT-T-T-GTACTAGTTCTAACA--ATTATTCCTGTGTGCGC-TGG--TA--TTATTATTTTTTTCTATAAAGAAGAAAGTATTTCATCCATTTTTGCTCATTGTTCTATACCAAGCTTGTTTACATTATGGGGTTTGTG---GAAGATGTAACGAAA-GAGAAATAACCG--CCACAAAATAGTGA------AA-CA--ATGT----------TTAGAACAATA--AGTCCCTGTTAAGGTGTCATAGAATCATGTATCCGGATTATAAGTGACGACTTTAA-GTCACGTGGTATCAAACATAGG-ACCATAATATGCATCCACTTTC-TCATTAT---TGA--C--TATCAA---AAATGTGTTCGACCT-CTCCTGATGTTTATCTTGTCAATGTTATATA
gi|5 : TCATTGATCTATCCTGATTTTGAGTACGTTATAAGAAGTCTTTGTAAAGTTGCAA--AAT-GAGA--TAACTA--ACAGATAA---TGATG-A-TA---A--ACGTCAT-AA-CGTTTCGACCAAAA--TTTCGATATTAAGCCGCCACAAAATCAATTAGCCGGATTCCA--T-ATGGTTCTAA-A----ATA--ATCAAACACGGT-ATCATACTAATCATATACCTA-TTCATCATAGGTTATTT--T-TATAGGTACATGTGTTTTATGT-TTCAG-TTGT---TCTCGTTTTCGTCATATACAT-CA---GGATTTTCGTCAGCGGC-ATTGTAGATTTTTCAGAAGTACACTTTATA----TG-TAAGATTTTATGCGT----TTATAATTAATGCTGTA-ATGTA------GA----TTAGGT-GTGT----TTAT-------CAT-----T-GTGC--------ATTAataaaaaatattgatcccccttatcagcatgggatatttttagtcagaccagcgttttaaatgtacggtagtgtttccaccattaatggtgtaatgtaacattgctacgtttatcatcatgtattatattcactttatgagaccggtca
gi|6 : aCTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATtgtcaccattgtatggagactggtca
gi|7 : TTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATT
gi|8 : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAAT
gi|9 : ATGGCTACA------AACTGATTCATCTTAATGTACAGATAACATCCCCTCATATATAGGA-G-TAAACGTACG-TAGTCTTTTTTTTTTTTGGAGTAGAAATATCACATGC-ACT--CATTGTTAAACTTA-CGTATTTACAATCGATGTTTGACCACCTGTGGAATAA-C-GATCA-------CT-G-T-GTGCG--TTCTTGTCGTATTTGTCGTATGTGCGCATGGATTA--TTA--ATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATATTGATCCCCCTTATCAGCATGGAATATCTTTATTCAGAACAGCGTTTTAAATACACGATAGCGTTTTCACCATTAATGTTGTAATGTAATAATGCTAC
Unaligned ( gi|16 ): TTTACGTTTACTGGGTTACTAATGGAGATACACATTATTTGTGTTGCCCATATCATTCCAATGCCA
Unaligned ( gi|17 ): AATCTGGTATGGACGCTTGATTATCACCCAAGTTACATCAACATATGACCACCT
Alignments
lowQualScore : 11 1 1 2222 111 44444444444 111 444444 1111 11 22 222222 222222 3333333 2222 111 222222222222222222222 111 111111 1111 222 11 22222 111111111 1111 2222222 22222222222222222222 1111111 1111111 66666666666 2222 3333333 1 3333 1111 2222 44444444444444444444444444444 22 1 1 1 11 1 1 1 1 11 1 1 1 11 1 1 11 1 222 11 11
lowQualScore : 2 3 3 3 2 33 0 3 3 2 0 1111 777 3 77777777777 777 2 3 3 2 2 000000 0 1 1 7777 5555 99 3 88 666666 1 1 777777 1 0 1 7777777 5 0 2222 1 0 6 666 5 999999999999999999999 000 1 1 666666 99 6666 0 555 44 1 0 1 1 6 99 6 55 99 1 1 1 66666 5 77 000000000 4444 0 99 1 1 0 1 66 6 3 1 8 1 1 2222222 22222222222222222222 1 22 1 1 8 7777777 0 8888888 1 22222222222 2 1 1 8888 1 1 4444444 1 0 0 0000 2 3 0 0 0000 3 1111 88888888888888888888888888888 00 7 0 3 3 6 6 5 22 88 5 5 1 5 5 88 5 1 5 5 1 66 5 5 1 1 88 5 111 1 88 1 1 88 1
lowQualScore : . . . . . .. . . . . . .... ... . ........... ... . . . . . ...... . . . .... .... .. . .. ...... . . ...... . . . ....... . . .... . . . ... . ..................... ... . . ...... .. .... . ... .. . . . . . .. . .. .. . . . ..... . .. ......... .... . .. . . . . .. . . . . . . ....... .................... . .. . . . ....... . ....... . ........... . . . .... . . ....... . . . .... . . . . .... . .... ............................. .. . . . . . . . .. .. . . . . . .. . . . . . .. . . . . .. . ... . .. . . .. .
lowQualScore : 5 2 2 2 5 88 0 2 2 5 0 2222 555 2 55555555555 555 5 2 2 5 5 444444 6 0 0 6666 2222 44 2 44 222222 4 4 222222 4 8 0 2222222 0 8 2222 0 7 7 888 2 777777777777777777777 777 0 0 777777 22 8888 8 000 88 0 7 0 0 4 22 7 88 22 0 4 3 00000 7 99 999999999 9999 4 00 0 0 7 0 77 7 8 4 0 4 4 0000000 44444444444444444444 8 22 0 0 0 6666666 8 3333333 0 33333333333 0 0 0 3333 0 0 0000000 0 2 5 0000 5 2 8 2 5555 2 2222 22222222222222222222222222222 77 3 7 3 3 7 7 5 00 00 5 5 0 5 5 55 5 0 0 5 0 55 5 5 0 0 55 5 000 0 55 0 0 55 0
consensus : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA-TGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGNGACC--GAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATTA-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGC-TGG--TG--TTAC-ATTTTTT---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCTATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-TG-TAAGATTTNATCCGCGGCATTGCAATT-GT-CTGTAGATGTATTTTTCAAAT-GTTAGATAGTGT----TTGT-------CAT-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
Reference ( family-1649 ) : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA-TGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGNGACC--GAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATTA-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGC-TGG--TG--TTAC-ATTTTTT---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCTATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-TG-TAAGATTTNATCCGCGGCATTGCAATT-GT-CTGTAGATGTATTTTTCAAAT-GTTAGATAGTGT----TTGT-------CAT-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
gi|1 : CTTGATTATCATTAGTTGGAA--TATA--AATCATCG--TTTG-TAGCT-TAATTTCATAATTTACAGAAAACGTTTACATTTC-CTCTAGTAC-GCGTAATCTTCCAGACGTTTTCCATCATTGTAAGA----AACAAGTAAATAGCAGTGAAATAAAATT--GTGAGGCATTCTGTTTGTTGTATTTTTTTTCATTCTG----GTTAAATTTG-TATTTACTGTCACTTTA-GTGGAC-ACAT-GCATAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATTGCTA------GAAATTGATTCAAGTTAATGGACAG----CGTT-----GTGT--AGAACACTGGATGT-TGGT-GAATTTGACTGGTAGGAA--AGGAATTTCACTTGCAA----GAGTATCAAACCT-TAGTATTGACATTCAGTATTTGACAACGCTT-GAATTA-G-GATAAA---AATCG-TAT-GTAAT--TTTTGCTA--ATGTGTACTTCGCGCG---GG--TG--TTAA-ATTTT-----ACAAAGAAGCAAATATATCACTCATACACACTCATTGTTATATCCAAAGTTTGTTTAAATTATAGGAAGTGTGCATCAAGTTGCAA--AAACAAGA--TAACTG--ACACAGAATATTAATA-AATAG-TA--ACGTCGT-AATCG-TTAGAATAATT--TACCCTTGTTAAAATTTCGGAGAATCAAGTCTCTTGAGTCCAAGTGGTGGTTCTAA-GTCATGTGACAACAAGCACAAT-ATCATTCAGTTCATTCACTTA-TTTATTAT---TTG--T--T-GAAA---AAATGCATTTAATGT-TTCCT-CTGTCCAACCTGTATTTGTTATATATTT-TTTTTCAAGATT----AA-----AANNNNNNNNNNNNN----NNNNNNNNNNNNGA-TGAAAAAATTTGATCCGCAGCATTGCAATT--T-CTGTAGATGTATTTTTCAAATGGTTAGATAGTGT----TTGTCCTCCACCATACCTGTAGTGT--------AATGATAGTAAGTTTGTTATTGCGA--TGATATCAGTGTTGATA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCACAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACTTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGAAAGCAATATAGAATATACGGAAAGTACACTAAATATCTTAGGAAAATATGTAGA-TTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTATAA-TTA-TTCAGTTATAAACTTATCT-AAGATTCAAAATTATATAAATTATAT
gi|1 : GCTCCAAACC--TATCTTT-GTAACAAT---GGTGAGACCTGT--TTGTGTAACCTGGGAT--AACAAGGTATCctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctccaaacctatctttgtaacaatggtgagacctgtttgtgtaacctgggataacaaggtatcga
gi|10 : cttgattatcattagttggaatataaatcatcgtttgtagcttaatttcataatttacagaaaacgtttacatttcctctagtacgcgtaatcttccagacgttttccatcattgtaagaaacaagtaaatagcagtgaaataaaattgtgaggcattctgtttgttgtattttttttcattctggttaaatttgtatttactgtcactttagtggacacatgcataattatccttatcatggtactgatcttagcatgtattgtccactttgattgctagaaattgattcaagttaatggacagcgttgtgtagaacactggatgttggtgaatttgactggtaggaaaggaatttcacttgcaagagtatcaaaccttagtattgacattcagtatttgacaacgcttgaattaggataaaaatcgtatgtaatttttgctaatgtgtacttcgcgcgggtgttaaattttacaaagaagcaaatatatcactcatacacactcattgttatatccaaagtttgtttaaattataggaagtgtgcatcaagttgcaaaaacaagataactgacacagaatattaataaatagtaacgtcgtaatcgttagaataatttacccttgttaaaatttcggagaatcaagtctcttgagtccaagtggtggttctaagtcatgtgacaacaagcacaatatcattcagttcattcacttatttattatttgttgaaaaaatgcatttaatgtttcctctgtccaacctgtatttgttatatattttttttcaagattaaaannnnnnnnnnnnnnnnnnnnnnnnngatgaaaaaatttgatccgcagcattgcaatttctgtagatgtatttttcaaatggttagatagtgtttgtcctccaccatacctgtagtgtaatgatagtaagtttgttattgcgatgatatcagtgttgatattggacaggtcagacaatttgtttaacacttaatcttgatatcactccacgccacagcaatttatggcacaatcttacaataaattagcattacttacttcgaacattgacttccttattattcaaagtttttagattacaatgctcctgacagaaagcaatatagaatatacggaaagtacactaaatatcttaggaaaatatgtagattcttaaaacaaaaacaaaaaaatcgatcgcttgaaatattataattattcagttataaacttatctaagattcaaaattatataaattatatctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTCAGGGCA--GGGCGTGTATT-GGCTTTGACTGGT--GAATTAGAATTTTCACATGAG--C--GAGTga
gi|11 : TGTTGACAATCAGTATTTGACCACGCGT-GGATAA-G-GGTTAA---ATTTGAG-T-GTAAT--TTCTGATA--ATTTGTACTTTGTGCGC---G--TG--TTAC-A-TTTTC---ACAAAGAAGC-ACTATTTCGTCCA
gi|12 : ttCCAAGTTTGTTTACTTTATAGGAATTGTACATGAGGTTGC-A--GAA-GAGAT-TTACTG--ATACATAGTATCAAT--A-CAG-TGCTACGTCGT-ATTTG-CTAAAACAAAA--TGCCGTTGTTAA
gi|13 : tCAATCAATATTTTACCACATGT-AAATTAAG-GATCAATATATGCA-C-T-GT-----TTCTAATC--ATTTGTCCTACGAGTGC-TTG--TT--TAAT-ATTTTTTGT-AGAAAGAAGAAACTATTTCGTCca
gi|14 : CACAGAATATTGAAACA-TAG-CA--ACGTCAG-AATAT-TTAGAACGATAATTATC--TGTTAAGGTGTCAGAGCACCATGTATCCGGATACCAAGTTGTGCATTTAA-GTCAC
gi|2 : AA--AAC-AAGA--TAACTG--ACACAGAATATTAA-A-A-TAGGTA--ACGTCGTTAATCA-TTAGAACAAAAA-TACCCTTGTTAAAATTTCGGAGA-TCAAGTCTCTGGATTTCAAGTG-TGGTTCTAAAGTCATGTAACAACAAGCAAAATCATCAATCAGTTCATTC--------CACTAC---TTA--N--N-NNNN---NNNNNNNNNNNNNNN-NNNNT-C-----AT-TTGTTTTTG--AAAGA-ATGCATTTAAAGTTTCCTCTGC--CCAACCTGCATTTGTTA----TACTTTTTTTAAAGATT-TAAGATTTGATCCGCGGCATTGTAATT--T-CTGTAGATGTATTTTTCAAAT-GGTAGATAGTGT----TTGT---------T-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGTGTTG-TATTTGGACAGGTCAGACAATTTG-TTAACACTTAATCTTGATATCACTCCACGCCCAAGTAATTTATGACACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAA--TTTTAGATTAC-ATGCTCCTGACAGGAAGCGATATAGAATATACGG-AAGTACACCAACTATCTTAGGAAAATATGTAGATTTCTTAAAAC-AAAAC--AAAAATCGATCGC-TGAAATATTTTAAGTTATTTCATTTAT-CACTTATCTAAAGATTCAAAA-TATATCAATTATATa
gi|2 : aattggcaagGCACCAAACCAATATCTTTTGTAATGATATGGAAGAGACCTGTATTTGTGTACTCTGTGATAAAAAAAGATATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgagcaccaaaccaatatcttttgtaatgatatggaagagacctgtatttgtgtactctgtgataaaaaaagatatccaa
gi|3 : aattggcaagaaaacaagataactgacacagaatattaaaataggtaacgtcgttaatcattagaacaaaaatacccttgttaaaatttcggagatcaagtctctggatttcaagtgtggttctaaagtcatgtaacaacaagcaaaatcatcaatcagttcattccactacttannnnnnnnnnnnnnnnnnnnnnnnntcatttgtttttgaaagaatgcatttaaagtttcctctgcccaacctgcatttgttatactttttttaaagatttaagatttgatccgcggcattgtaatttctgtagatgtatttttcaaatggtagatagtgtttgtttagtgtaataatagtaagtttgttattgcgattgatatcagtgttgtatttggacaggtcagacaatttgttaacacttaatcttgatatcactccacgcccaagtaatttatgacacaatcttacaataaattagcattacctacttcgaacattgacttccttattattcaaattttagattacatgctcctgacaggaagcgatatagaatatacggaagtacaccaactatcttaggaaaatatgtagatttcttaaaacaaaacaaaaatcgatcgctgaaatattttaagttatttcatttatcacttatctaaagattcaaaatatatcaattatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgaCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTTAGGACA--GGACGTGCGTT-GGCTTTGAGTGGTGA--ATTAGAATTTTCACATGAG--C--GAGTGTCAAACGTATA-TATTCACAATCAATATTTGACAACGTGT-GAATTA-AAGAT-AC---ATTCG-T-CAGCTAT--TTTTGGGG--AAATGGTCTACGTGCGC-TAGC-TGGATTTC---TTTTT---ACAAAGATGTGAGTGTTTTGTTCATACTCATTCATTGTTATATCCAAAGTTTGTTTACATTATAGGAAGTGTGTATGAAGCTGCAA--AAA-GAGA--TAACTGACACACACAAGAGTGATGCA-TTG-TA--AAGTTTG-AATGG-CTGCAACAA-A--CGCCTCTGTTAAGCTTCCAGAAAATCAAGTCTCCGGAGTTTAAACGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCGCATAATTCATTTA-TTACTTCATCAT---GTG--TAAT-TAAA---AAACATTTTTTATCTATTTCT-CTCCCTATCTT-TTTTTTTTAcaa
gi|3 : TTTCATTAGTAGCATTACAGTT-GT-TTTTAGATATGTTCTTTAAAT-ATGAGATAATGTACTTTTAC-------CAT-----TAATGTGGCTATGTAACAATGGTATTTTTATTATTGTGAGTTG-TATTAACATTG-TA-TT-GACA--TCAGccacaacttgttagaaaactgttgactttcattagtagcattacagttgtttttagatatgttctttaaatatgagataatgtacttttaccattaatgtggctatgtaacaatggtatttttattattgtgagttgtattaacattgtattgacatcag
gi|4 : cactttgatggttatatgtagacatttattcattgtaatgggcagatatcattcctctgtatttaggacaggacgtgcgttggctttgagtggtgaattagaattttcacatgagcgagtgtcaaacgtatatattcacaatcaatatttgacaacgtgtgaattaaagatacattcgtcagctatttttggggaaatggtctacgtgcgctagctggatttctttttacaaagatgtgagtgttttgttcatactcattcattgttatatccaaagtttgtttacattataggaagtgtgtatgaagctgcaaaaagagataactgacacacacaagagtgatgcattgtaaagtttgaatggctgcaacaaacgcctctgttaagcttccagaaaatcaagtctccggagtttaaacgatggttctaagtcacgtaacatcaagcacaatatcgcataattcatttattacttcatcatgtgtaattaaaaaacattttttatctatttctctccctatcttttttttttaccacaacttgttagaaaactgttgacTTGATGGCTA------GAAACGCATTCACGGTAATGAACAG----------TTTATAC---GGGTA----ACTTA-GGTAGAATATGTCTATTGGAG--CAGTAATT--ACCTAGAACCTTGA-TGTTAAACTT-TTGTATTTACAATTAATATTTGACCACGTGT-AAATTAAG-GATCAA-----TCT-T-T-GTACTAGTTCTAACA--ATTATTCCTGTGTGCGC-TGG--TA--TTATTATTTTTTTCTATAAAGAAGAAAGTATTTCATCCATTTTTGCTCATTGTTCTATACCAAGCTTGTTTACATTATGGGGTTTGTG---GAAGATGTAACGAAA-GAGAAATAACCG--CCACAAAATAGTGA------AA-CA--ATGT----------TTAGAACAATA--AGTCCCTGTTAAGGTGTCATAGAATCATGTATCCGGATTATAAGTGACGACTTTAA-GTCACGTGGTATCAAACATAGG-ACCATAATATGCATCCACTTTC-TCATTAT---TGA--C--TATCAA---AAATGTGTTCGACCT-CTCCTGATGTTTATCTTGTCAATGTTATATA
gi|5 : TCATTGATCTATCCTGATTTTGAGTACGTTATAAGAAGTCTTTGTAAAGTTGCAA--AAT-GAGA--TAACTA--ACAGATAA---TGATG-A-TA---A--ACGTCAT-AA-CGTTTCGACCAAAA--TTTCGATATTAAGCCGCCACAAAATCAATTAGCCGGATTCCA--T-ATGGTTCTAA-A----ATA--ATCAAACACGGT-ATCATACTAATCATATACCTA-TTCATCATAGGTTATTT--T-TATAGGTACATGTGTTTTATGT-TTCAG-TTGT---TCTCGTTTTCGTCATATACAT-CA---GGATTTTCGTCAGCGGC-ATTGTAGATTTTTCAGAAGTACACTTTATA----TG-TAAGATTTTATGCGT----TTATAATTAATGCTGTA-ATGTA------GA----TTAGGT-GTGT----TTAT-------CAT-----T-GTGC--------ATTAataaaaaatattgatcccccttatcagcatgggatatttttagtcagaccagcgttttaaatgtacggtagtgtttccaccattaatggtgtaatgtaacattgctacgtttatcatcatgtattatattcactttatgagaccggtca
gi|6 : aCTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATtgtcaccattgtatggagactggtca
gi|7 : TTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATT
gi|8 : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAAT
gi|9 : ATGGCTACA------AACTGATTCATCTTAATGTACAGATAACATCCCCTCATATATAGGA-G-TAAACGTACG-TAGTCTTTTTTTTTTTTGGAGTAGAAATATCACATGC-ACT--CATTGTTAAACTTA-CGTATTTACAATCGATGTTTGACCACCTGTGGAATAA-C-GATCA-------CT-G-T-GTGCG--TTCTTGTCGTATTTGTCGTATGTGCGCATGGATTA--TTA--ATT
blockSeqs : G T A A C . . T A G . . . T . . C A A C C TATGTA T T ATAT CCTC TC C T GTATT G A TTGGAG T A GAACCTT G ATA G G AG T AATTTGAGTGTAAT CGT A T ATGGAT GA TTAT TCT AA C A C C CG . AA AC T T T AACA G CT GTTAATCA TAAT GT G G A TG A A A C T A ATTACT AGGTTATTTTTATAGGT N NN N N A GATGTTT ATGCAT A CGTCAGCGGC C C G GAAG T T AAGATT G G AATG G T ATG A ACTT CATTAATGTGGCTATGT GT A . T G G . CA . . . C T . . . T G T T C A . C A AA T ATG A AT C T AA A
blockSeqs : G T A A C . . T A G . . . T . . C A A C C TATGTA T T ATAT CCTC TT C . GCGTT G A GAAT T A CACT G TTG C . AA C CATTCGTCAGCTAT A C A TAGC . TAT GT TG C C A T . . T . G T T TGCA . . GTATTTG AAA CT A T C GA . A T . A A ACTTTC GTGTAATTAAA C TT T C . CTCCCT CATCA G CCTCTGCCC G G T . A A TG C A GT G T ATA A . CATTGTGC T . . . . .
blockSeqs : G T A A C . . T A G . . . T . . C A A C C CA C G ATAA CCCT AT T . AGGTA A T GAAT A C AGC T ACG T . AG C ATATATGCACTGT C T A TTG . CA . AA G C C T . . . . G T T TGA . . AGAATAT AA TC C T C GA . G T . A T ACCTAT TGACTATCAA T TG G C . TTGT T . T . . . . . TTAGTGT
blockSeqs : . G C . TT . . . ACGTA T T GGAG A A AGC . T . G C ATCTTTGTACTAG G C G TGG . AT . C G T . . . . . C G G TA . . TGAATGG TA CC G G A G . . T . A T . TTANNNNNN T TG T G . C
blockSeqs : . C . CTGTGTGCG A C A G . C . . . . A T G AA . . ATAACGT AA GA C G A A .
blockSeqs : T . . . . . . A .
blockSeqCons : CA**** ATAT CCTC TT ** GCGTN* GAAT** AG* TNG*** CAT* TNACTAGG************ CTT****
originalCons : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA-TGGACGTGCGNTAGGCTTTGACTGGTGGGGATTAGAAATTTCACATGNGACC--GAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATTA-G-GATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGC-TGG--TG--TTAC-ATTTTTT---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TTA--T--T-TAAA---AAACGCGTTTNATNT-TTCCT-CTGTCTATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-TG-TAAGATTTNATCCGCGGCATTGCAATT-GT-CTGTAGATGTATTTTTCAAAT-GTTAGATAGTGT----TTGT-------CAT-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
finalCons : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTACA----GAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA--GGACGTGCGTN-GGCTTTGACTGGTGAAT--TAGAAATTTCACATGNGACC--GAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGT-GAATTAAG-GATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGCTNG---TG--TTACAT-TTTTT---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCG-TTAGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTATTNACTAGG------------AAACGCGTTTNATNT-TTCCTCTT----ATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-TG-TAAGATTTNATCCGCGGCATTGCAATT-GT-CTGTAGATGTATTTTTCAAAT-GTTAGATAGTGT----TTGT-------CAT-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATATTGATCCCCCTTATCAGCATGGAATATCTTTATTCAGAACAGCGTTTTAAATACACGATAGCGTTTTCACCATTAATGTTGTAATGTAATAATGCTAC
Unaligned ( gi|16 ): TTTACGTTTACTGGGTTACTAATGGAGATACACATTATTTGTGTTGCCCATATCATTCCAATGCCA
Unaligned ( gi|17 ): AATCTGGTATGGACGCTTGATTATCACCCAAGTTACATCAACATATGACCACCT
Alignments
lowQualScore : 11 1 1 2222 111 44444444444 111 555555 1111 22222 11 11 11 22 1 3333333 2222 222222222222222222222 111 11 1111 2222222 11 22222 1111 2222222 5555555555555555555 4444444444 1111111 66666666666 2222 3333333 1 3333 1111 2222 44444444444444444444444444444 22 1 1 1 11 1 1 1 1 11 1 1 1 11 1 1 11 1 222 11 11
lowQualScore : 2 3 3 3 2 33 0 3 3 2 0 1111 777 3 77777777777 777 2 3 3 2 2 111111 0 1 1 7777 00000 99 11 11 44 8 1 1 22 0 1 0 1 7777777 5 0 2222 1 0 3 5 999999999999999999999 000 1 1 99 8 11 5555 4444444 44 1 0 1 1 6 99 6 55 99 1 1 66666 5 77 888 44 5 4444 0 99 1 1 0 1 66 6 3 1 8 1 1 2222222 2222222222222222222 1 22 1 1 8 4444444444 0 8888888 1 22222222222 2 1 1 8888 1 1 4444444 1 0 0 0000 2 3 0 0 0000 3 1111 88888888888888888888888888888 00 7 0 3 3 6 6 5 22 88 5 5 1 5 5 88 5 1 5 5 1 66 5 5 1 1 88 5 111 1 88 1 1 88 1
lowQualScore : . . . . . .. . . . . . .... ... . ........... ... . . . . . ...... . . . .... ..... .. .. .. .. . . . .. . . . . ....... . . .... . . . . ..................... ... . . .. . .. .... ....... .. . . . . . .. . .. .. . . ..... . .. ... .. . .... . .. . . . . .. . . . . . . ....... ................... . .. . . . .......... . ....... . ........... . . . .... . . ....... . . . .... . . . . .... . .... ............................. .. . . . . . . . .. .. . . . . . .. . . . . . .. . . . . .. . ... . .. . . .. .
lowQualScore : 5 2 2 2 5 88 0 2 2 5 0 2222 555 2 55555555555 555 5 2 2 5 5 000000 6 0 0 6666 44444 44 00 00 66 8 4 4 00 4 4 8 0 2222222 0 8 2222 0 7 5 2 777777777777777777777 777 0 0 44 0 00 8888 6666666 88 0 7 0 0 4 22 7 88 22 0 3 00000 7 99 777 44 7 9999 4 00 0 0 7 0 77 7 2 4 0 4 4 0000000 4444444444444444444 8 22 0 0 0 2222222222 8 3333333 0 33333333333 0 0 0 3333 0 0 0000000 0 2 5 0000 5 2 8 2 5555 2 2222 22222222222222222222222222222 77 3 7 3 3 7 7 5 00 00 5 5 0 5 5 55 5 0 0 5 0 55 5 5 0 0 55 5 000 0 55 0 0 55 0
consensus : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTATATGTAGAAATTNATTCATNGTAATGGACAGATATCATTCCTCCGTATTTAGGACA--GG--ACGTGCGTNGGCTTTGACTGGT--GAANTAGAAATTTCACATGNGACC--GAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGTGAATTAAGGATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGCTGG-TG--TTAC-ATTTTT--T---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCGTT-AGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT--GTTATT-----A--AA-AAACGCGTTTNATNT-TTCCT----CT--CCATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-TG-TAAGATTTNATCCGCGGCATTGCAATT-GT-CTGTAGATGTATTTTTCAAAT-GTTAGATAGTGT----TTGT-------CAT-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
Reference ( family-1649 ) : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATGGCTACA----GAAATTNATTCATNGTAATGGACAGATATCATTCCTCTGTATTTAGGACA--GG--ACGTGCGTNGGCTTTGACTGGT--GAATTAGAAATTTCACATGNGACC--GAGTGTCAAACTTATNGTATTNACAATCAATATTTGACCACGCGTGAATTAAGGATCAA---ATTCG-T-T-GTAAT--TTCTGATA--ATTTGTCCTNCGTGCGCTNG-TG--TTAC-ATTTTT--T---ACAAAGAAGNAANTATTTCGTCCATACTCGCTCATTGTTNTATCCNAAGTTTGTTTACATTATAGGAAGTGTGCATGAAGTTGCAA--AAA-GAGA--TAACTG--ACACANAATATTGATA-A-TAG-TA--ACGTCGT-AATCGTT-AGAACAANA--TGCCCTTGTTAAGNTNTCGGAGAATCAAGTNTCCGGATTCCAAGTGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCATACAATTCATTCACTTACTTCATTAT---TNACT-----A--GG-AAACGCGTTTNATNT-TTCCT----CT---TATCTTGTTTTTGTTATATACAT-CATTTNAAGTTTC-TCAGC--C-AACGTGNATTTNTCA----TACNCTTTNTAAGG-TG-TAAGATTTNATCCGCGGCATTGCAATT-GT-CTGTAGATGTATTTTTCAAAT-GTTAGATAGTGT----TTGT-------CAT-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGCGTTG-TA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCNNAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGGAAGCGATATAGAATATACGGAAAGTACACCAANTATCTTAGGAAAATATGTAGATTTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTNTAAGTTATTTCANTTATANACTTATCTAAAGATTCAAAATTATATNAATTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNCCAAACCAATATCTTTTGTAACGATATGGGNGAGACCTGTATTTGTGTANCCTGNGATAAAANAAGGTATC
gi|1 : CTTGATTATCATTAGTTGGAA--TATA--AATCATCG--TTTG-TAGCT-TAATTTCATAATTTACAGAAAACGTTTACATTTC-CTCTAGTAC-GCGTAATCTTCCAGACGTTTTCCATCATTGTAAGA----AACAAGTAAATAGCAGTGAAATAAAATT--GTGAGGCATTCTGTTTGTTGTATTTTTTTTCATTCTG----GTTAAATTTG-TATTTACTGTCACTTTA-GTGGAC-ACAT-GCATAATTATCCTTATCATGGTACTGATCTTAGCATGTATTGTCCACTTTGATTGCTA------GAAATTGATTCAAGTTAATGGACAG----CGTT-----GTGT--AGAACACTGG--ATGTTGGT-GAATTTGACTGGTAGGAA--AGGAATTTCACTTGCAA----GAGTATCAAACCT-TAGTATTGACATTCAGTATTTGACAACGCTTGAATTA-GGATAAA---AATCG-TAT-GTAAT--TTTTGCTA--ATGTGTACTTCGCGCG--GG-TG--TTAA-ATTTT-------ACAAAGAAGCAAATATATCACTCATACACACTCATTGTTATATCCAAAGTTTGTTTAAATTATAGGAAGTGTGCATCAAGTTGCAA--AAACAAGA--TAACTG--ACACAGAATATTAATA-AATAG-TA--ACGTCGT-AATCGTT-AGAATAATT--TACCCTTGTTAAAATTTCGGAGAATCAAGTCTCTTGAGTCCAAGTGGTGGTTCTAA-GTCATGTGACAACAAGCACAAT-ATCATTCAGTTCATTCACTTA-TTTATTAT---TTGTTG----A--AA-AAATGCATTTAATGT-TTCCT----CTGTCCAACCTGTATTTGTTATATATTT-TTTTTCAAGATT----AA-----AANNNNNNNNNNNNN----NNNNNNNNNNNNGA-TGAAAAAATTTGATCCGCAGCATTGCAATT--T-CTGTAGATGTATTTTTCAAATGGTTAGATAGTGT----TTGTCCTCCACCATACCTGTAGTGT--------AATGATAGTAAGTTTGTTATTGCGA--TGATATCAGTGTTGATA-TTGGACAGGTCAGACAATTTGTTTAACACTTAATCTTGATATCACTCCACGCCACAGCAATTTATGGCACAATCTTACAATAAATTAGCATTACTTACTTCGAACATTGACTTCCTTATTATTCAAAGTTTTTAGATTACAATGCTCCTGACAGAAAGCAATATAGAATATACGGAAAGTACACTAAATATCTTAGGAAAATATGTAGA-TTCTTAAAACAAAAACAAAAAAATCGATCGCTTGAAATATTATAA-TTA-TTCAGTTATAAACTTATCT-AAGATTCAAAATTATATAAATTATAT
gi|1 : GCTCCAAACC--TATCTTT-GTAACAAT---GGTGAGACCTGT--TTGTGTAACCTGGGAT--AACAAGGTATCctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctccaaacctatctttgtaacaatggtgagacctgtttgtgtaacctgggataacaaggtatcga
gi|10 : cttgattatcattagttggaatataaatcatcgtttgtagcttaatttcataatttacagaaaacgtttacatttcctctagtacgcgtaatcttccagacgttttccatcattgtaagaaacaagtaaatagcagtgaaataaaattgtgaggcattctgtttgttgtattttttttcattctggttaaatttgtatttactgtcactttagtggacacatgcataattatccttatcatggtactgatcttagcatgtattgtccactttgattgctagaaattgattcaagttaatggacagcgttgtgtagaacactggatgttggtgaatttgactggtaggaaaggaatttcacttgcaagagtatcaaaccttagtattgacattcagtatttgacaacgcttgaattaggataaaaatcgtatgtaatttttgctaatgtgtacttcgcgcgggtgttaaattttacaaagaagcaaatatatcactcatacacactcattgttatatccaaagtttgtttaaattataggaagtgtgcatcaagttgcaaaaacaagataactgacacagaatattaataaatagtaacgtcgtaatcgttagaataatttacccttgttaaaatttcggagaatcaagtctcttgagtccaagtggtggttctaagtcatgtgacaacaagcacaatatcattcagttcattcacttatttattatttgttgaaaaaatgcatttaatgtttcctctgtccaacctgtatttgttatatattttttttcaagattaaaannnnnnnnnnnnnnnnnnnnnnnnngatgaaaaaatttgatccgcagcattgcaatttctgtagatgtatttttcaaatggttagatagtgtttgtcctccaccatacctgtagtgtaatgatagtaagtttgttattgcgatgatatcagtgttgatattggacaggtcagacaatttgtttaacacttaatcttgatatcactccacgccacagcaatttatggcacaatcttacaataaattagcattacttacttcgaacattgacttccttattattcaaagtttttagattacaatgctcctgacagaaagcaatatagaatatacggaaagtacactaaatatcttaggaaaatatgtagattcttaaaacaaaaacaaaaaaatcgatcgcttgaaatattataattattcagttataaacttatctaagattcaaaattatataaattatatctttgtgtgtctaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTCAGGGCA--GG--GCGTGTATTGGCTTTGACTGGT--GAATTAGAATTTTCACATGAG--C--GAGTga
gi|11 : TGTTGACAATCAGTATTTGACCACGCGTGGA-TAAGGGTTAA---ATTTGAG-T-GTAAT--TTCTGATA--ATTTGTACTTTGTGCGC--G-TG--TTAC-A-TTTT--C---ACAAAGAAGC-ACTATTTCGTCCA
gi|12 : ttCCAAGTTTGTTTACTTTATAGGAATTGTACATGAGGTTGC-A--GAA-GAGAT-TTACTG--ATACATAGTATCAAT--A-CAG-TGCTACGTCGT-ATTTGCT-AAAACAAAA--TGCCGTTGTTAA
gi|13 : tCAATCAATATTTTACCACATGTAAATTAAGGATCAATATATGCA-C-T-G---T--TTCTAATC--ATTTGTCCTACGAGTGCTTG-TT--TAAT-ATTTTTTGT---AGAAAGAAGAAACTATTTCGTCca
gi|14 : CACAGAATATTGAAACA-TAG-CA--ACGTCAG-AATATTT-AGAACGATAATTATC--TGTTAAGGTGTCAGAGCACCATGTATCCGGATACCAAGTTGTGCATTTAA-GTCAC
gi|2 : AA--AAC-AAGA--TAACTG--ACACAGAATATTAA-A-A-TAGGTA--ACGTCGTTAATCATT-AGAACAAAAA-TACCCTTGTTAAAATTTCGGAGA-TCAAGTCTCTGGATTTCAAGTG-TGGTTCTAAAGTCATGTAACAACAAGCAAAATCATCAATCAGTTCATTC--------CACTAC---TTANN-----N--NN-NNNNNNNNNNNNNNN-NNNNN-----T---CAT-TTGTTTTTG--AAAGA-ATGCATTTAAAGTTTCCTCTGC--CCAACCTGCATTTGTTA----TACTTTTTTTAAAGATT-TAAGATTTGATCCGCGGCATTGTAATT--T-CTGTAGATGTATTTTTCAAAT-GGTAGATAGTGT----TTGT---------T-----TAGTGT--------AATAATAGTAAGTTTGTTATTGCGA-TTGATATCAGTGTTG-TATTTGGACAGGTCAGACAATTTG-TTAACACTTAATCTTGATATCACTCCACGCCCAAGTAATTTATGACACAATCTTACAATAAATTAGCATTACCTACTTCGAACATTGACTTCCTTATTATTCAAA--TTTTAGATTAC-ATGCTCCTGACAGGAAGCGATATAGAATATACGG-AAGTACACCAACTATCTTAGGAAAATATGTAGATTTCTTAAAAC-AAAAC--AAAAATCGATCGC-TGAAATATTTTAAGTTATTTCATTTAT-CACTTATCTAAAGATTCAAAA-TATATCAATTATATa
gi|2 : aattggcaagGCACCAAACCAATATCTTTTGTAATGATATGGAAGAGACCTGTATTTGTGTACTCTGTGATAAAAAAAGATATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgagcaccaaaccaatatcttttgtaatgatatggaagagacctgtatttgtgtactctgtgataaaaaaagatatccaa
gi|3 : aattggcaagaaaacaagataactgacacagaatattaaaataggtaacgtcgttaatcattagaacaaaaatacccttgttaaaatttcggagatcaagtctctggatttcaagtgtggttctaaagtcatgtaacaacaagcaaaatcatcaatcagttcattccactacttannnnnnnnnnnnnnnnnnnnnnnnntcatttgtttttgaaagaatgcatttaaagtttcctctgcccaacctgcatttgttatactttttttaaagatttaagatttgatccgcggcattgtaatttctgtagatgtatttttcaaatggtagatagtgtttgtttagtgtaataatagtaagtttgttattgcgattgatatcagtgttgtatttggacaggtcagacaatttgttaacacttaatcttgatatcactccacgcccaagtaatttatgacacaatcttacaataaattagcattacctacttcgaacattgacttccttattattcaaattttagattacatgctcctgacaggaagcgatatagaatatacggaagtacaccaactatcttaggaaaatatgtagatttcttaaaacaaaacaaaaatcgatcgctgaaatattttaagttatttcatttatcacttatctaaagattcaaaatatatcaattatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacacattatatagtctactaagtgtgttgaCACTTTGATGGTTATATGTAGACATTTATTCATTGTAATGGGCAGATATCATTCCTCTGTATTTAGGACA--GG--ACGTGCGTTGGCTTTGAGTGGT--GAATTAGAATTTTCACATGAG--C--GAGTGTCAAACGTATA-TATTCACAATCAATATTTGACAACGTGTGAATTAAAGAT-AC---ATTCG-T-CAGCTAT--TTTTGGGG--AAATGGTCTACGTGCGCTAGCTGGATTTC---TTTT--T---ACAAAGATGTGAGTGTTTTGTTCATACTCATTCATTGTTATATCCAAAGTTTGTTTACATTATAGGAAGTGTGTATGAAGCTGCAA--AAA-GAGA--TAACTGACACACACAAGAGTGATGCA-TTG-TA--AAGTTTG-AATGGCT-GCAACAA-A--CGCCTCTGTTAAGCTTCCAGAAAATCAAGTCTCCGGAGTTTAAACGATGGTTCTAA-GTCACGTAACATCAAGCACAAT-ATCGCATAATTCATTTA-TTACTTCATCATGTGTAATT-----A--AA-AAACATTTTTTATCTATTTCT----CTCCCTATCTT-TTTTTTTTAcaa
gi|3 : TTTCATTAGTAGCATTACAGTT-GT-TTTTAGATATGTTCTTTAAAT-ATGAGATAATGTACTTTTAC-------CAT-----TAATGTGGCTATGTAACAATGGTATTTTTATTATTGTGAGTTG-TATTAACATTG-TA-TT-GACA--TCAGccacaacttgttagaaaactgttgactttcattagtagcattacagttgtttttagatatgttctttaaatatgagataatgtacttttaccattaatgtggctatgtaacaatggtatttttattattgtgagttgtattaacattgtattgacatcag
gi|4 : cactttgatggttatatgtagacatttattcattgtaatgggcagatatcattcctctgtatttaggacaggacgtgcgttggctttgagtggtgaattagaattttcacatgagcgagtgtcaaacgtatatattcacaatcaatatttgacaacgtgtgaattaaagatacattcgtcagctatttttggggaaatggtctacgtgcgctagctggatttctttttacaaagatgtgagtgttttgttcatactcattcattgttatatccaaagtttgtttacattataggaagtgtgtatgaagctgcaaaaagagataactgacacacacaagagtgatgcattgtaaagtttgaatggctgcaacaaacgcctctgttaagcttccagaaaatcaagtctccggagtttaaacgatggttctaagtcacgtaacatcaagcacaatatcgcataattcatttattacttcatcatgtgtaattaaaaaacattttttatctatttctctccctatcttttttttttaccacaacttgttagaaaactgttgacTTGATGGCTA------GAAACGCATTCACGGTAATGAACAG------TT------TAT-----ACG--GGTAACTTAGGTAGAATATGTCTATT--GGAGCAGTAATT--ACCTAGAACCTTGA-TGTTAAACTT-TTGTATTTACAATTAATATTTGACCACGTGTAAATTAAGGATCAA-----TCT-T-T-GTACTAGTTCTAACA--ATTATTCCTGTGTGCGCTGG-TA--TTATTATTTTT--TTCTATAAAGAAGAAAGTATTTCATCCATTTTTGCTCATTGTTCTATACCAAGCTTGTTTACATTATGGGGTTTGTG---GAAGATGTAACGAAA-GAGAAATAACCG--CCACAAAATAGTGA------AA-CA--ATGT---------TT-AGAACAATA--AGTCCCTGTTAAGGTGTCATAGAATCATGTATCCGGATTATAAGTGACGACTTTAA-GTCACGTGGTATCAAACATAGG-ACCATAATATGCATCCACTTTC-TCATTAT---TGACT-----ATCAA-AAATGTGTTCGACCT-CTCCTGATGTT---TATCTTGTCAATGTTATATA
gi|5 : TCATTGATCTATCCTGATTTTGAGTACGTTATAAGAAGTCTTTGTAAAGTTGCAA--AAT-GAGA--TAACTA--ACAGATAAT---GATG-A-TA---A--ACGTCAT-AA-CGTTTCGACCAAAA--TTTCGATATTAAGCCGCCACAAAATCAATTAGCCGGATTCCA--T-ATGGTTCTAA-A----ATAA--TCAAACACGGT-ATCATACTAATCATATACCTA-TTCATCATAGGTTATTTTTATA--GGTACATGTGTTTTATGT-TTCAG----TT---GTTCTCGTTTTCGTCATATACAT-CA---GGATTTTCGTCAGCGGC-ATTGTAGATTTTTCAGAAGTACACTTTATA----TG-TAAGATTTTATGCGT----TTATAATTAATGCTGTA-ATGTA------GA----TTAGGT-GTGT----TTAT-------CAT-----T-GTGC--------ATTAataaaaaatattgatcccccttatcagcatgggatatttttagtcagaccagcgttttaaatgtacggtagtgtttccaccattaatggtgtaatgtaacattgctacgtttatcatcatgtattatattcactttatgagaccggtca
gi|6 : aCTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATtgtcaccattgtatggagactggtca
gi|7 : TTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAATT
gi|8 : CTTGACTATCATTAGTTGGAAGATATATTAATCCTTGAATTTAATAGCTCTA--TTCATAATTTACAGCAAA-GTTTACATTTCTCACTATTACAGCGTAATCTTCATGACGTTTTCCATCAATGCAAAAGGGTAATAA-TAAATA----TTAAATA---TTTCATGGGG-----------TT---TTTTTATTCGTGGTGCTACGTTGCATTTGATGTTTACTGACAGAGTAAGTGGACCACACCGTAAAAT
gi|9 : ATGGCTACA------AACTGATTCATCTTAATGTACAGATAACATCCCCTCATATATAGGAGT--AA--ACGTACGTAGTCTTTTTTTTTTTTGGAGTAGAAATATCACATGC-ACT--CATTGTTAAACTTA-CGTATTTACAATCGATGTTTGACCACCTGTGGAATAACGATCA-------CT-G-T-GTGCG--TTCTTGTCGTATTTGTCGTATGTGCGC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATATTGATCCCCCTTATCAGCATGGAATATCTTTATTCAGAACAGCGTTTTAAATACACGATAGCGTTTTCACCATTAATGTTGTAATGTAATAATGCTAC
Unaligned ( gi|16 ): TTTACGTTTACTGGGTTACTAATGGAGATACACATTATTTGTGTTGCCCATATCATTCCAATGCCA
Unaligned ( gi|17 ): AATCTGGTATGGACGCTTGATTATCACCCAAGTTACATCAACATATGACCACCT