lowQualScore : 11111111111111111
lowQualScore : 5555555555555555555555555 1111 1111 222 111 222222 6666666666666666666666666666666666666 333 111 3333 111 2222222222 1 44 444444444 1 55555555 1111 2 222 1 7777777777777 4 4444 1 2 2 2 22222222222222222 11 1 6666666666666 1 2 2 3333 1 1 222 11 2 1 1 33 2 1 2 2222222 333 11 555555 33 11 1 22 4
lowQualScore : 1 6 6 6 3 5555555555555555555555555 5 5 5 66 2222 77 77 0 7777 444 5 5 000 5 2 555555 6 7 6 6666666666666666666666666666666666666 1 777 5 999 888 1111 5 5 0 66 222 9999999999 7 4 5 5 0 5 00 444444444 6 7 7 6 3 6 6 66666666 9999 7 7 6 6 222 3 4444444444444 7 0 4 7777 5 0 0 0 66666666666666666 88 5 8888888888888 5 4 0 0 8888 5 5 666 88 0 5 2 5 55 0 5 0 2222222 111 3 2 99 333333 4 55 88 5 44 0
lowQualScore : . . . . . ......................... . . . .. .... .. .. . .... ... . . ... . . ...... . . . ..................................... . ... . ... ... .... . . . .. ... .......... . . . . . . .. ......... . . . . . . . ........ .... . . . . ... . ............. . . . .... . . . . ................. .. . ............. . . . . .... . . ... .. . . . . .. . . . ....... ... . . .. ...... . .. .. . .. .
lowQualScore : 0 7 7 7 5 7777777777777777777777777 0 0 0 99 1111 99 99 7 9999 666 7 7 000 7 2 888888 7 8 7 3333333333333333333333333333333333333 7 555 0 555 888 2222 0 0 1 99 111 6666666666 1 3 7 7 1 7 00 000000000 7 3 3 7 3 7 7 00000000 0000 3 3 7 7 000 3 7777777777777 3 0 0 5555 5 0 0 0 55555555555555555 55 0 5555555555555 5 0 0 0 0000 0 0 555 00 0 0 5 5 00 0 0 0 0000000 000 0 5 00 555555 0 00 00 5 00 0
consensus : AATAAAAAC-ATGT-ATAA-CAAAATACAT-GT-A------------A-ATTACAAT-AC-AAAC-A--TGTAT----AAC--A--AAATACATGT----AAA-T-TA-CA-A---TA-CANA------CAT-GTATA-CA-AAA-TAC--A-TT-TAAAGT--ACAAANT-T-A-GAAAAGTAGT--ATG-ACTAAGAAAA---TGT--CTAAGTA-CAA-CAAAT--ACAA-A-TGT---AA-GTTAATGGT-AAAAATCCACC-AAC-TTGGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTAC-CCCAC-ATATATG-TATATATACATATGTATATCTATNTAT-C-TA-TATAT----TA--TAAT-TATATGTAA-TGNATCACATT-GCCCGGCAATAAATAATACCAAAAAAGTTATTTCAAAGATATAGACAAACACATGTGTGAGTGTGTAGTGAAAACGTTTGATCCTCAGTATCTTATNTCCCACATCTNAAAACTTAAAGGGCAAATACACATGGNTCTCCCAATTGGACTTTTGGTTAAGATGTTTATTCATTTGTNATATTGGTATCTCTTGAGTTGAATGGAAGTTTTTCCACCACACACCAGCAGCATGATTNCTGANGNGATGCCCCTGTGTNGTGTATGGTTCTGATTGGGTAAAAGTGCTCAGANTTATGGC-GGGTGGATA
Reference ( gi|3 ) : AATAAAAAC-ATGT-ATAA-CAAATTACAT-GT-A------------A-ATTACAAT-AC-AAAC-A--TGTAT----AAC--A--AAATACATGT----AAA-T-TA-CA-A---TA-CATA------CAT-GTATA-C--AAT-TAC--A-GT-TAAAGT-CACAAATT-TAACGAAAAATAG---ATG-ACTAAGAAAA---TG---CTAAGTA-CAA-CAAAT--ACAA-A-TGT---AA-GTTAATGGT-AAAAATCCACC-AAC-TTGGCCTTGT-AAGCGGGTCA---AATCCACACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTA--CCCACAATATATG-TATATATACATATGTATATC-ATCTAT-C-TA-TATATAACGTA--TAATGTATATGTAATTGTATCACATTGGCGCGGCAATAAAT-ATA-CAAAAAAGTTATTTCAAAGATATAGAC-AACACA------AGT--------AAAACGTTTGATCCTCAG-A-CTT-TTT---ACATTTAAAAACTTAAA-GGC-AATACACA---TTCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCA-CACACA-CA-CA-CAT-A-TTCTGAGGAGATG----T-TGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAG-ATTATGGCGGGGTGGATAC
gi|1 : AATAAAAAC-ATGT-ATAA-CAAAATACATAGT-A------------A-ATTACAAT-AC-AAAC-A--TGTAT----AAC--A--AAATACATGT----AAA-TATACCA-A---TA-CATA------CATGGTATA-CAAAAT-TAC--ATGT---AAGTACAAAAA-T-TA--GGAAAACAGTGTATG-ACT-AGAAAA---TGT--CTAAGTACCAACCAAAT--ACAA-A-TGCTGAAA-GTT-ATGGT-AAAAAT-CACCGAACTTTGGCC-TGT-AG--GGGTCAACCAGTCC-CACAA-GAAAATGAG-CTTCCCTA-TTGAAGATGAATCTTTCCTACGCCCAC-ATATATG-TATATATACATATGTATATCTATATAT-CTTA-TATATA---TA--T-ATTTATATGTAA-TGAATCACATT-GCCCGGCAATAAAT-ATACCAAAAAAGTTATTTCAAAGATATAGAC-AACACA------AG---------AAAACGTTTGAT-CTCAG-A-C-T-TAT---ACATTTAAAAACTTAAAGGGCAAATACACATGGTTCTCCCAATTGGACTTTTGGTTAAGA--TTTA-TCATTTGTGAT-TT--TATCTCTTGAGTTGAATGGAAGTTTTTCCACCACACACCA-CAGCAT-ATTTCTGAGGA-ATGCCCCT-TGTAGTGTATGGTTCTGAT--GGTAAAAGTGCTCAGAATTA
gi|7 : acAATGCAAAC-ATGT-ATAA-CAAAATACAT-GTAA------------A-ATTACAAT-AC-AAAC-A--TGTAagagtgcatattttgc
gi|6 : tgcataagtttatctatgccttcctccttcattttacaacacaaacaccgactgaaattgcgaaaaattttactcaatactgagataatttttttttataaaaagAATATAAAC-ATGT-ATCA-CAAAATACAT-GT-ACATGTAATGTAAA-ATTATAATTGC-GAAC-AATTTTACTCGAAACTGA--GATTAAATGTTTATAAA-A-CA-GA-A---TA-CAAA------CTT-GTATAAC--AAAATGC--A-TG-TGAAGT-AAAACATT---ATAAAAAGTATT--ATG-AC-AAGAAAAAAAT----CTAACTT-CAA-CAAAT--ACAA-A-TGTC--AA-GTT-ATGTT-AAAAGTCAACA-AAA-TTGGCCTTGT-GAG-GGGTTA---Aaacaaaatacatgtaaaatacaaaatataagaaaaagtattagactagaaaatttctaactacaacaaatacaaatgcaaagttatggtaaaaaatccaccaacttggccttgt
gi|8 : ctgtacgatacaaacaccgattggaattgcgaaaacatttactcaaaactgagataattttttttataaaaaagAATTACAAC-ATGT-ATAAACTAAATACAA-TT-AG-----------A-ATTACAGT-ACAAAAC-A--TGTAT----AAA--AAGAAATACATGTG---AGA-T-TA-CAGA---TA-CATATACACCCAT-GTA-A-CA-AAA-TACATA-G--TAAAGT--ACAAAAT-TTATGAAcagtccctaa
gi|2 : cgctatataaaaacacaaaatccttttcaattattcattttacaacaccatgagacaccgactgagaaattcgcgaaacaacaattatactccaatactgagatgaaaattctttattcttaacaatgATAAAAACGATGT-ATAA-C--------------------------A-ATTACAAT-AC-AAACGA--TGTAT----AAC--A--AAATACATGT----AAA-TGTC-CA-AAATTAGCATAT-----CAT-GTATA-CGAAAA-TAC--A--T-T-AAGT--ACAAAAT-T----AGAAATAGATTATG-ACT---AGAA---TGT--CTAAGTA-CAA-CAAATTAACAA-ATTGTA--AA-GT--ATGGC-TAAAGTCCA-C-AAC-TTGGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGG-AAATGAGTCTTCCCCTAGTGAAGAT-AATCTTTCCTAC-CCCAC-ATATATGATA-ATATACCTATGTATATCTATCTAT-C-TACTATAT----TA--TAAT-TA-ATGTAA-TGTATCACATT-GC-CGGC-ATAAATAATA-CAAAAAAATTATTTCAAAGATATAGACAAACACATGTGTGAGTGTGTAGTGAAAACG--TGATCCTCAGTATCTTATTTCCCAC-TCTTAAAACTTAAA-GGC-AATACACA---GTCT-CCAATT-GACTTTTGG-T-AGATGTTTATTCATTT-TTATATTGGTATCTCTTGAGTTG-ATGGAAGTTTTT-CA-CACACA-CAGCA-CATGA-TGCTGATGTGATA----TGTGTTGTGTAT--TTCTGATTGGGT-AAAGTGCTCAA-TTTATGGC-GGGTGGATAc
gi|4 : tacAAAC-ATGTTATAA-CAAAATAC----T-A------------CTACCACAAT-AC-AA-C-A--TGTAT----AAC--A--AAATACAT-T----AAA---TA-CA-A---C--CACG------CAT--TAAA-CA-AAA-TAC--A-TTGTAAAGT---CAAATA-GAA--AAAAGTAG---TAG-ACT-AGAAAA---TGTCCCTAAGAA-CAA-CAAAT--ACAACACTGC---CG-CTTA---GT-AAAAATCCCCC-A---T--GCCCTGTCAAGgtgggtcta
gi|7 : gtgtataatcgcctatttatccttcctccttcattttcaacacaaacaccgactcgaattggcgaaattttacatccactatccgagaaatcaattttataaaaaagaatacaaatcagtataacaaaatacatgtcatccaataaaaacactgtataaaaatacatgaataatacaaccatgtaacaaaatacaatgtaaatacatAAT-GC-AAAC-A--TGTAT----AAC--A--AAATACATGT----AAAAT-TA-CA-A---TA-CAAA------CAT-GTAAA-C--AAAATAC--A-TG-TAAAAT--ACAAAATATAAGAAAAAGTAT---TAG-ACTAGAAAAT---TT---CTAACTA-CAA-CAAAT--ACAA-A-TGCA--AA-GTT-ATGGTAAAAAATCCACC-AAC-TTGGCCTTGT-gg
gi|5 : tgcataagtttatctatgccttcctccttcattttacaacacaaacaccgactgaaattgcgaaaaattttactcaatactgagataatttttttttataaaaagAAT-AC-AAAC-A--TGTAT----AAC--A--AAATACATTT----AAA-TGTC-CA-A---TA-
gi|9 : aatcgattagtttggataattactttagtatttatgccttcctcctacattttacacacacaaacaccgactgaaattgcgaaaattttactcaatactgagataaaatttttataaaaagACAAATT---A-GAAAAGTAGT--ATG-ACTAGAAAAA---TT---CTAAGTA-CAA-C-AAT--ACAA-A-TGTA--AA-GTT-ATGGTAAAAAAT---CC-AAC-TTGGCCTTGT-AA--GGGTCAAC-AGTCC-CACAAGGAAGATGAGTCTT-CCCT-GTGAAGATGAAT-TTTCCTA-------AATTTATT-T-TAT-TTCAT-TATACACC-TTGTACGT-TA-TACAT---GTAGTTAACATATTTGTAaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaacaacgtagtatgacagaaaatgtctaagcataaatacaatgtaaagttaatggtcaagaatccaccaacttggccttgtaagggtcaacac
gi|15 : tCAAATT---AGAAAAAGTAGG--ATGGACTA-GAAAA---TGT--CTAAGTA-CAA-CAAAT--ACAA-A-TGT---A---TTAATtaattt
gi|5 : TAGT--ATG-AC--AGAAAA---TGT--CTAAGCA-TAA----AT--ACAA---TGT---AAAGTTAATGGTCAAGAATCCACC-AAC-TTGGCCTTGT-AA--GGGTCA---Aaaagtt
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TTTATTTATGCCTTCGTCCTTCATTGTACAACAAAACACCGATTGGAATTGCGAAAAATTTTTAGTCTTTTAATTTTCTTTAGATAAAATAAACATGTATATGATAAATATAAGGGAATTAAAAGAAAGTATTTAAGAGAGGCTACACTAAATGATATCAATATACAATATTGCAGAAGAAAATT
Unaligned ( gi|11 ): AATTTATGCCTTCCTCCTTCATTTTACACCACAAACACCGACCTAAAATTGGCGCGCGGAAAAAAAAATTTACTCAAGACTGAGATAAAATTTTTATAGA
Unaligned ( gi|12 ): ATTTATGGCCTTCCTCCTTCATTTTAACAACACAAAACACGACTGAAAATTGAAAAATTTTTATCAATACCGGAGATTAAAATTTTTAAA
Unaligned ( gi|13 ): TTATGCCTACCTCCTTCATTTTACAACACAAACACCGACTGAAATTGCGAAAAATTTTACTCACATACTGAGATATAAATTTTT
Unaligned ( gi|14 ): TTTTATGCCTTCCTCCTTCTTGTAGCAACACAACACGACTGAAATTGCGAACAAATTTTACTCAATACTGAGATAATTTTAT
Unaligned ( gi|16 ): ATATTTTTGTACCTTCCTCCTTCATTTTACAACACAACACCGACTGAAATTGCCAAAAATTTT
Unaligned ( gi|17 ): TGAACAAGTTAGTTTATGCCTTCCTCCTTCATTTTACAACA
Alignments
lowQualScore : 1111111111111111
lowQualScore : 444444444444444444444 11 2222 111111 111 1111 222222 1 22 1 1 1 1 4444 1 1 1 2 11 2 1111111111111111 5555555555555 2 2 3333 22 2 2 2 11111 4444444 22222 555555 2 1 2
lowQualScore : 5 5 5 5 111111111111111111111 4 4 4 00 9999 66 66 9999 4 4 0000 4 777 4 1 777777 4 9 5 5 5 5 666 2 4 4 6 3 3 99 88 66666 55 4 7777 7777 4 4 55 8 4 4 222222 88 8 4 77 5 55 5 6 8 2 3 3 2 0 2 2 00 3 3 7 7 1 3 3 1111 3 7 3 1 3 6 7 3 33 3 0000000000000000 7 6 0000000000000 7 0 1 3 3 4444 6 6 22 7 3 6 1 7 3 3 55555 3333333 66666 1 77 444444 1 3 7 7 6 4 0
lowQualScore : . . . . ..................... . . . .. .... .. .. .... . . .... . ... . . ...... . . . . . . ... . . . . . . .. .. ..... .. . .... .... . . .. . . . ...... .. . . .. . .. . . . . . . . . . . .. . . . . . . . .... . . . . . . . . .. . ................ . . ............. . . . . . .... . . .. . . . . . . . ..... ....... ..... . .. ...... . . . . . . .
lowQualScore : 7 7 7 7 777777777777777777777 4 4 4 66 4444 11 11 4444 4 4 3333 4 888 4 0 222222 4 8 0 0 0 0 000 0 4 4 3 6 6 55 77 00000 55 0 4444 0000 0 0 55 0 0 0 777777 99 9 4 33 0 11 7 7 0 5 2 2 5 0 5 5 00 3 3 3 3 0 3 3 7777 3 3 3 0 3 7 3 7 33 7 7777777777777777 3 7 0000000000000 3 7 0 3 7 7777 7 7 77 3 7 7 0 3 3 7 77777 3333333 77777 0 77 333333 0 3 3 3 7 0 0
consensus : AATAAAAA-C-ATGT-ATAA-CAAAATACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TA-CA-A---TA-CANA------CAT-GTATA-C-AAAA-TAC-AT-G-TAAAGT-AC-AAAAT-T-A--GAAAA-GTA--G--TAT--G-ACTAAGAAAATGT--CTAAGTA-CAA-CAAAT--ACAA-A-T-GT---AA-GTTAATGGT-AAAAA-TCCACC-AAC-TTGGCCTTGT-AAG-GGGTCAA-CAGTCC-CACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTAC-CCCAC-ATATATG-TATATATACATATGTATATCTATCTATC-TA-TATATA---TATAAT-TATATGTAA-TGTATCACATT-GCCCGGCAATAAAT-ATACCAAAAAAGTTATTTCAAAGATATAGAC-AACACA------AGT-------GAAAACGTTTGATCCTCAG-A-CTTATTT---ACATTTAAAAACTTAAA-GGC-AATACACAT---TCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCAC-CACACAC-CA-CAGCAT-ATT-CTGAGGAGATGC---T-TGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAGA-TTATGGCGGGGTGGATA
Reference ( family-164 ) : AATAAAAA-C-ATGT-ATAA-CAAAATACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TA-CA-A---TA-CANA------CAT-GTATA-C-AAAA-TAC-AT-T-TAAAGT-AC-AAANT-T-A--GAAAA-GTA--G--TAT--G-ACTAAGAAAATGT--CTAAGTA-CAA-CAAAT--ACAA-A-T-GT---AA-GTTAATGGT-AAAAA-TCCACC-AAC-TTGGCCTTGT-AAG-GGGTCAA-CAGTCC-CACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTAC-CCCAC-ATATATG-TATATATACATATGTATATCTATNTATC-TA-TATAT----TATAAT-TATATGTAA-TGNATCACATT-GCCCGGCAATAAATAATACCAAAAAAGTTATTTCAAAGATATAGACAAACACATGTGTGAGTGTGTAGTGAAAACGTTTGATCCTCAGTATCTTATNTCCCACATCTNAAAACTTAAAGGGCAAATACACATGGNTCTCCCAATTGGACTTTTGGTTAAGATGTTTATTCATTTGTNATATTGGTATCTCTTGAGTTGAATGGAAGTTTTTCCAC-CACACAC-CAGCAGCATGATTNCTGANGNGATGCCCCTGTGTNGTGTATGGTTCTGATTGGGTAAAAGTGCTCAGANTTATGGC-GGGTGGATA
gi|1 : AATAAAAA-C-ATGT-ATAA-CAAAATACATAGTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-TATACCA-A---TA-CATA------CATGGTATA-C-AAAATTAC-AT-G-T-AAGT-ACAAAAAT-T-A--GGAAA-ACAGTG--TAT--G-ACT-AGAAAATGT--CTAAGTACCAACCAAAT--ACAA-A-T-GCTGAAA-GTT-ATGGT-AAAAA-T-CACCGAACTTTGGCC-TGT--AG-GGGTCAACCAGTCC-CACAA-GAAAATGAG-CTTCCCTA-TTGAAGATGAATCTTTCCTACGCCCAC-ATATATG-TATATATACATATGTATATCTATATATCTTA-TATATA---TATATT-TATATGTAA-TGAATCACATT-GCCCGGCAATAAAT-ATACCAAAAAAGTTATTTCAAAGATATAGAC-AACACA------A---------GAAAACGTTTGAT-CTCAG-A-CTTAT-----ACATTTAAAAACTTAAAGGGCAAATACACATGGTTCTCCCAATTGGACTTTTGGTTAAGA--TTTA-TCATTTGTGAT-TT--TATCTCTTGAGTTGAATGGAAGTTTTTCCAC-CACACAC-CA-CAGCAT-ATTTCTGAGGA-ATGCCCCT-TGTAGTGTATGGTTCTGAT--GGTAAAAGTGCTCAGAATTA
gi|15 : acAAAT-T-A--GAAAAAGTA--G--GAT--GGACTA-GAAAATGT--CTAAGTA-CAA-CAAAT--ACAA-A-T-GT---A---TTAATagagtgcatattttgc
gi|2 : cATAAAAA-CGATGT-ATAA-CAA--------------------------TTACAAT-ACAAA-CGA--TGTAT----AAC--AA--AATACATGT----AA-A-TGTC-CA-AAATTAGCATAT-----CAT-GTATA-CGAAAA-TAC-AT-T---AAGT-AC-AAAAT-T-A--GAAA---TA--GATTAT--G-ACTAG---AATGT--CTAAGTA-CAA-CAAATTAACAA-A-TTGT---AAAGT--ATGGC-TAAAG-TCCAC--AAC-TTGGCCTTGT-AAG-GGGTCAA-CAGTCC-CACAAGGAAA-TGAGTCTTCCCCTAGTGAAGAT-AATCTTTCCTAC-CCCAC-ATATATGATA-ATATACCTATGTATATCTATCTATC-TACTATAT----TATAAT-TA-ATGTAA-TGTATCACATT-GCC-GGCA-TAAATAATAC-AAAAAAATTATTTCAAAGATATAGACAAACACATGTGTGAGTGTGTAGTGAAAACG--TGATCCTCAGTATCTTATTTCCCAC-TCTTAAAACTTAAA-GGC-AATACACA---GTCT-CCAATT-GACTTTTGGT--AGATGTTTATTCATTT-TTATATTGGTATCTCTTGAGTTG-ATGGAAGTTTTT-----CACACACACAGCA-CATGA-TGCTGATGTGATA----TGTGTTGTGTAT--TTCTGATTGGGT-AAAGTGCTCA-ATTTATGGC-GGGTGGATAaaagtt
gi|3 : tacAATAAAAA-C-ATGT-ATAA-CAAATTACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TA-CA-A---TA-CATA------CAT-GTATA-C--AAT-TAC-AG-T-TAAAGTCAC-AAATT-T-AACGAAAA-ATA--G---AT--G-ACTAAGAAAATG---CTAAGTA-CAA-CAAAT--ACAA-A-T-GT---AA-GTTAATGGT-AAAAA-TCCACC-AAC-TTGGCCTTGT-AAGCGGGTCA---AATCCACACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTA--CCCACAATATATG-TATATATACATATGTATATC-ATCTATC-TA-TATATAACGTATAATGTATATGTAATTGTATCACATTGGCGCGGCAATAAAT-ATA-CAAAAAAGTTATTTCAAAGATATAGAC-AACACA------AGT--------AAAACGTTTGATCCTCAG-A-CTT-TTT---ACATTTAAAAACTTAAA-GGC-AATACACAT---TCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCACACACACAC------ACAT-ATT-CTGAGGAGATGT-----TGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAGA-TTATGGCGGGGTGGATAgtgggtcta
gi|4 : AATACAAATC-A-GT-ATAA-CAAAATACAT-GTC------------A---TCCAAT-AAAAA-C-AC-TGTAT----A----AA--AATACATG------A-A-T-----A-A---TA-CAAC------CAT-GTA-A-C-AAAA-TACAAT-G-TAAA-T-AC-A-----T-A--AACAT-GT------TAT--A-AC----AAAATA---CT-ACTA-CCA-C-AAT--ACAACA-T-GT---A----TAAC-----AAAA-TACATT-AAc
gi|4 : gtgtataatcgcctatttatccttcctccttcattttcaacacaaacaccgactcgaattggcgaaattttacatccactatccgagaaatcaattttataaaaaagAAA-C-ATGTTATAA-CAAAATAC----TA------------CTACCACAAT-ACAA--C-A--TGTAT----AAC--AA--AATACAT-T----AA-A-T--A-CA-A---C--CACG------CAT--TAAA-C-AAAA-TAC-AT-TGTAAAGT--C-AAATA-G-A--AAAAA-GTA--G--TA---G-ACT-AGAAAATGTCCCTAAGAA-CAA-CAAAT--ACAACACT-GC---CG-CTTA---GT-AAAAA-TCCCCC-A---T--GCCCTGTCAAG-GGatacaaccacgcattaaacaaaatacattgtaaagtcaaatagaaaaaagtagtagactagaaaatgtccctaagaacaacaaatacaacactgccgcttagtaaaaatcccccatgccctgtcaaggg
gi|5 : gtgtataatcgcctatttatccttcctccttcattttcaacacaaacaccgactcgaattggcgaaattttacatccactatccgagaaatcaattttataaaaaagaatacaaatcagtataacaaaatacatgtcatccaataaaaacactgtataaaaatacatgaataatacaaccatgtaacaaaatacaatgtaaatacatAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATTT----AA-A-TGTC-CA-A---TA--AAA-------AT-GT
gi|5 : aatcgattagtttggataattactttagtatttatgccttcctcctacattttacacacacaaacaccgactgaaattgcgaaaattttactcaatactgagataaaatttttataaaaagT-T-A--AACAACGTA--G--TAT--G-AC--AGAAAATGT--CTAAGCA-TAA----AT--ACAA---T-GT---AAAGTTAATGGTCAAGAA-TCCACC-AAC-TTGGCCTTGT-AA--GGGTCAA-CAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaacaacgtagtatgacagaaaatgtctaagcataaatacaatgtaaagttaatggtcaagaatccaccaacttggccttgtaagggtcaacac
gi|6 : aatcgattagtttggataattactttagtatttatgccttcctcctacattttacacacacaaacaccgactgaaattgcgaaaattttactcaatactgagataaaatttttataaaaagaatacaaacatgtataacaaaatacatttaaatgtccaataaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATATAAA-C-ATGT-ATCA-CAAAATACAT-GTACATGTAATGTAAA-ATTATAATTGCGAA-C-AATTTTACTCGAAACTGAG--ATTAAATGTTTATAA-A-A-CA-GA-A---TA-CAAA------CTT-GTATAAC-AAAA-TGC-AT-G-TGAAGT-AA-AACAT-T-AT-AAAAA-GTA--T--TAT--G-ACAAGAAAAAAAT--CTAACTT-CAA-CAAAT--ACAA-A-T-GTC--AA-GTT-ATGTT-AAAAG-TCAACA-AAA-TTGGCCTTGT-GAG-GGGTTAA-CAGTCC-Cc
gi|7 : ctgtacgatacaaacaccgattggaattgcgaaaacatttactcaaaactgagataattttttttataaaaaagAAT-GCAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-AAT-TA-CA-A---TA-CAAA------CAT-GTAAA-C-AAAA-TAC-AT-G-TAAAAT-AC-AAAATATAA--GAAAA---A--G--TATTAG-ACT-AGAAAATTT--CTAACTA-CAA-CAAAT--ACAA-A-T-GCA--AA-GTT-ATGGTAAAAAA-TCCACC-AAC-TTGGCCTTGT-taa
gi|8 : tgcataagtttatctatgccttcctccttcattttacaacacaaacaccgactgaaattgcgaaaaattttactcaatactgagataatttttttttataaaaagAATTACAA-C-ATGT-ATAAACTAAATACAA-TTAG-----------A-ATTACAGT-ACAAAAC-A--TGTAT----AAA--AAGAAATACATGT----GAGA-T-TA-CAGA---TA-CATATACACCCAT-GTA-A-C-AAAA-TAC-ATAG-TAAAGT-AC-AAAAT-T-
gi|9 : cgctatataaaaacacaaaatccttttcaattattcattttacaacaccatgagacaccgactgagaaattcgcgaaacaacaattatactccaatactgagatgaaaattctttattcttaacaatgT-AC-AAA-T-T-A--GAAAA-GTA--G--TAT--G-ACTAGAAAAAT-T--CTAAGTA-CAA-CAA-T--ACAA-A-T-GT---AAAGTTA-TGGT-AAAAAATCCA----AC-TTGGCCTTGT-AAG-GG-TCAA-CAGTCC-CACAAGGAAGATGAGTCTT-CCCT-GTGAAGATGAAT-TTTCCTAtatgaac
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTATTTATGCCTTCGTCCTTCATTGTACAACAAAACACCGATTGGAATTGCGAAAAATTTTTAGTCTTTTAATTTTCTTTAGATAAAATAAACATGTATATGATAAATATAAGGGAATTAAAAGAAAGTATTTAAGAGAGGCTACACTAAATGATATCAATATACAATATTGCAGAAGAAAATT
Unaligned ( gi|11 ): AATTTATGCCTTCCTCCTTCATTTTACACCACAAACACCGACCTAAAATTGGCGCGCGGAAAAAAAAATTTACTCAAGACTGAGATAAAATTTTTATAGA
Unaligned ( gi|12 ): ATTTATGGCCTTCCTCCTTCATTTTAACAACACAAAACACGACTGAAAATTGAAAAATTTTTATCAATACCGGAGATTAAAATTTTTAAA
Unaligned ( gi|13 ): TTATGCCTACCTCCTTCATTTTACAACACAAACACCGACTGAAATTGCGAAAAATTTTACTCACATACTGAGATATAAATTTTT
Unaligned ( gi|14 ): TTTTATGCCTTCCTCCTTCTTGTAGCAACACAACACGACTGAAATTGCGAACAAATTTTACTCAATACTGAGATAATTTTAT
Unaligned ( gi|16 ): ATATTTTTGTACCTTCCTCCTTCATTTTACAACACAACACCGACTGAAATTGCCAAAAATTTT
Unaligned ( gi|17 ): TGAACAAGTTAGTTTATGCCTTCCTCCTTCATTTTACAACA
Alignments
lowQualScore : 1 333333333333333333333 11 11 222222 11111 11111 11 1111111 222222 11 1 1 22 11 1 222 2222 1 1 1 1 2 1 77777777777777777 111 2222222 1 1 222 1 1 22 1 1111 2 222222 3333 22 1 1
lowQualScore : 5 5 5 0 999999999999999999999 4 8 4 99 8888 55 11 8888 8 4 44 4 8 777 4 1 777777 4 9 5 5 5 5 5 5 3 4 4 44444 3 3 00000 55 00 99999 55 4 7777777 55 8888 4 4 55 444 4 111111 11 0 5 77 5 5 5 6 8 2 3 3 2 0 2 2 55 22 66 0 3 3 66 2 333 0000 1 0 7 3 3 6 7 3 3 3 66666666666666666 7 6 777 8888888 7 3 3 333 6 6 7 3 7 3 6 7 00 3 9999 3 6 777777 6 5555 00 7 7 3 5
lowQualScore : . . . . ..................... . . . .. .... .. .. .... . . .. . . ... . . ...... . . . . . . . . . . . ..... . . ..... .. .. ..... .. . ....... .. .... . . .. ... . ...... .. . . .. . . . . . . . . . . . . .. .. .. . . . .. . ... .... . . . . . . . . . . ................. . . ... ....... . . . ... . . . . . . . . .. . .... . . ...... . .... .. . . . .
lowQualScore : 0 0 0 0 999999999999999999999 0 0 0 55 5555 55 00 5555 0 0 33 0 0 000 0 0 000000 0 8 0 0 0 0 0 0 2 4 0 88888 6 6 77777 55 33 33333 55 0 7777777 55 5555 0 0 55 999 4 888888 99 0 0 55 0 0 7 7 0 5 2 2 5 0 5 5 00 55 55 0 2 2 55 5 222 8888 2 0 3 3 3 7 3 3 3 3 77777777777777777 3 7 777 0000000 3 3 3 333 7 7 3 3 3 3 7 3 00 3 0000 3 7 000000 7 3333 00 3 3 3 0
consensus : AATAAAAA-C-ATGT-ATAA-CAAAATACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TAC-A-A---TA-CANA------CATG-TATA-C-AAAAT-AC-A-T-GTAAAGT-ACA-AAA----T-T-A--G--A--AAA-GTAG--T--AT--G-ACTA----AGAAAATGT--CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT---AA-GTTAATGGT-AAAAA-TCCACC-AACTT-GGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTAC-CCCAC-ATATATGTAT-ATATACATATGTATATCTATNTATCT-A-TATATA---TATAAT-TATATGTAA-TGTATCACATT-GCCCGGCAATAAAT-ATA-CAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------AGTGAAAACGTTTGATCCTCAG-A-CTTATTT---ACATTTAAAAACTTAAA-GGC-AATACACA---TTCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCA-CACACA-CACAGCATA-T--T-CTGAGGAGATG---CTTGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAG-ATTATGGCGGGGTGGATA
Reference ( family-164 ) : AATAAAAA-C-ATGT-ATAA-CAAAATACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TAC-A-A---TA-CANA------CATG-TATA-C-AAAAT-AC-A-T-GTAAAGT-ACA-AAA----T-T-A--G--A--AAA-GTAG--T--AT--G-ACTA----AGAAAATGT--CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT---AA-GTTAATGGT-AAAAA-TCCACC-AACTT-GGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTAC-CCCAC-ATATATGTAT-ATATACATATGTATATCTATCTATCT-A-TATATA---TATAAT-TATATGTAA-TGTATCACATT-GCCCGGCAATAAAT-ATACCAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------AGTGAAAACGTTTGATCCTCAG-A-CTTATTT---ACATTTAAAAACTTAAA-GGC-AATACACA---TTCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCACCACACACCACAGCATA-T--T-CTGAGGAGATG---CTTGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAG-ATTATGGCGGGGTGGATA
gi|1 : AATAAAAA-C-ATGT-ATAA-CAAAATACATAGTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-TATACCA-A---TA-CATA------CATGGTATA-C-AAAATTAC-A-T-GTAA-GT-ACA-AAAA---T-T-A--G--G--AAA-ACAG--TGTAT--G-ACTA-----GAAAATGT--CT----AAGTACCAACCAAAT--ACAA-A-T-GCTGAAA-GTTA-TGGT-AAAAA-TC-ACCGAACTTTGGCCT-GT-A-G-GGGTCAACCAGTCC-CACAAG-AAAATGAG-CTTCCCTA-TTGAAGATGAATCTTTCCTACGCCCAC-ATATATGTAT-ATATACATATGTATATCTATATATCTTA-TATATA---TATATT-TATATGTAA-TGAATCACATT-GCCCGGCAATAAAT-ATACCAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------A--GAAAACGTTTGAT-CTCAG-A-CTTA--T---ACATTTAAAAACTTAAAGGGCAAATACACATGGTTCTCCCAATTGGACTTTTGGTTAAGA--TTTA-TCATTTGTGAT-TT--TATCTCTTGAGTTGAATGGAAGTTTTTCCACCACACACCACAGCATATT--T-CTGAGGA-ATGCCCCTTGTAGTGTATGGTTCTGAT--GGTAAAAGTGCTCAGAATTA
gi|15 : ac-AAA----T-T-A--G--A--AAAAGTAG--G--AT--GGACTA-----GAAAATGT--CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT---A---TTAATagagtgcatattttgc
gi|2 : cATAAAAA-CGATGT-ATAA-CAA--------------------------TTACAAT-ACAAA-CGA--TGTAT----AAC--AA--AATACATGT----AA-A-TGTCC-A-AAATTAGCATAT-----CATG-TATA-CGAAAAT-AC-A-T--TAA-GT-ACA-AAA----T-T-A--G--A--AA---TAGATT--AT--G-ACTA----G---AATGT--CT----AAGTAC-AAC-AAATTAACAA-A-TTGT---AAAGT--ATGGC-TAAAG-TCCAC--AACTT-GGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGGAAA-TGAGTCTTCCCCTAGTGAAGAT-AATCTTTCCTAC-CCCAC-ATATATG-ATAATATACCTATGTATATCTATCTATCT-ACTATAT----TATAAT-TA-ATGTAA-TGTATCACATT-G-CCGGC-ATAAATAATA-CAAAAAAATTATTTCAAAGATATAGACAAACACATGTGTGAGTGTGTAGTGAAAACG--TGATCCTCAGTATCTTATTTCCCAC-TCTTAAAACTTAAA-GGC-AATACACA---GTCT-CCAATT-GACTTTTGG-T-AGATGTTTATTCATTT-TTATATTGGTATCTCTTGAGTTG-ATGGAAGTTTTT----CACACA-CACAGCACA-TGATGCTGATGTGATA---TGTGTTGTGTAT--TTCTGATTGGGT-AAAGTGCTCAA-TTTATGGC-GGGTGGATAaaagtt
gi|3 : tacAATAAAAA-C-ATGT-ATAA-CAAATTACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TAC-A-A---TA-CATA------CATG-TATA-C--AATT-AC-A-G-TTAAAGTCACA-AAT----T-T-AACG--A--AAA-ATAG-----AT--G-ACTA----AGAAAATG---CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT---AA-GTTAATGGT-AAAAA-TCCACC-AACTT-GGCCTTGT-AAGCGGGTCA---AATCCACACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTA--CCCACAATATATGTAT-ATATACATATGTATATC-ATCTATCT-A-TATATAACGTATAATGTATATGTAATTGTATCACATTGGCGCGGCAATAAAT-ATA-CAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------AGT-AAAACGTTTGATCCTCAG-A-CTT-TTT---ACATTTAAAAACTTAAA-GGC-AATACACA---TTCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCA-CACACA-CACA-CATA-T--T-CTGAGGAGATG----TTGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAG-ATTATGGCGGGGTGGATAgtgggtcta
gi|4 : AATACAAATC-A-GT-ATAA-CAAAATACAT-GTC------------A---TCCAAT-AAAAA-C-AC-TGTAT----A----AA--AATACATG------A-A-T-----A-A---TA-CAAC------CATG-TA-A-C-AAAAT-ACAA-T-GTAAA-T-ACATAAACATGT-T-A--T--AACAAA-ATAC--T--AC--T-ACCACAATACAACATGT--ATAACAAAATAC-ATT-AAAT--ACAA-c
gi|4 : gtgtataatcgcctatttatccttcctccttcattttcaacacaaacaccgactcgaattggcgaaattttacatccactatccgagaaatcaattttataaaaaagAAA-C-ATGTTATAA-CAAAATAC----TA------------CTACCACAAT-ACAA--C-A--TGTAT----AAC--AA--AATACAT-T----AA-A-T--AC-A-A---C--CACG------CAT--TAAA-C-AAAAT-AC-ATT-GTAAAGT--CA-AA-------T-A--GAAA--AAA-GTAG--T--A---G-ACT-----AGAAAATGTCCCT----AAGAAC-AAC-AAAT--ACAACACT-GC---CG-CTTA---GT-AAAAA-TCCCCC-A--T---GCCCTGTCAAG-GGccacgcattaaacaaaatacattgtaaagtcaaatagaaaaaagtagtagactagaaaatgtccctaagaacaacaaatacaacactgccgcttagtaaaaatcccccatgccctgtcaaggg
gi|5 : gtgtataatcgcctatttatccttcctccttcattttcaacacaaacaccgactcgaattggcgaaattttacatccactatccgagaaatcaattttataaaaaagaatacaaatcagtataacaaaatacatgtcatccaataaaaacactgtataaaaatacatgaataatacaaccatgtaacaaaatacaatgtaaatacatAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATTT----AA-A-TGTCC-A-A---TA--AAA-------ATG-T
gi|5 : aatcgattagtttggataattactttagtatttatgccttcctcctacattttacacacacaaacaccgactgaaattgcgaaaattttactcaatactgagataaaatttttataaaaag----T-T-A--A--A--CAACGTAG--T--AT--G-AC------AGAAAATGT--CT----AAGCAT-AA----AT--ACAA---T-GT---AAAGTTAATGGTCAAGAA-TCCACC-AACTT-GGCCTTGT-AA--GGGTCAAC-Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaacaacgtagtatgacagaaaatgtctaagcataaatacaatgtaaagttaatggtcaagaatccaccaacttggccttgtaagggtcaacac
gi|6 : aatcgattagtttggataattactttagtatttatgccttcctcctacattttacacacacaaacaccgactgaaattgcgaaaattttactcaatactgagataaaatttttataaaaagaatacaaacatgtataacaaaatacatttaaatgtccaataaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATATAAA-C-ATGT-ATCA-CAAAATACAT-GTACATGTAATGTAAA-ATTATAATTGCGAA-C-AATTTTACTCGAAACTGAG--ATTAAATGTTTATAA-A-A-CAG-A-A---TA-CAAA------CTTG-TATAAC-AAAAT-GC-A-T-GTGAAGT-AAA-ACA----T-T-AT-A--A--AAA-GTAT--T--AT--G-ACAA----GAAAAAAAT--CT----AACTTC-AAC-AAAT--ACAA-A-T-GTC--AA-GTT-ATGTT-AAAAG-TCAACA-AAATT-GGCCTTGT-GAG-GGGTTAAC-AGTCC-Cc
gi|7 : ctgtacgatacaaacaccgattggaattgcgaaaacatttactcaaaactgagataattttttttataaaaaagAAT-GCAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-AAT-TAC-A-A---TA-CAAA------CATG-TAAA-C-AAAAT-AC-A-T-GTAAAAT-ACA-AAA----TATAA--G--A--AAA---AG--T--ATTAG-ACT-----AGAAAATTT--CT----AACTAC-AAC-AAAT--ACAA-A-T-GCA--AA-GTT-ATGGTAAAAAA-TCCACC-AACTT-GGCCTTGT-taa
gi|8 : tgcataagtttatctatgccttcctccttcattttacaacacaaacaccgactgaaattgcgaaaaattttactcaatactgagataatttttttttataaaaagAATTACAA-C-ATGT-ATAAACTAAATACAA-TTAG-----------A-ATTACAGT-ACAAAAC-A--TGTAT----AAA--AAGAAATACATGT----GAGA-T-TAC-AGA---TA-CATATACACCCATG-TA
gi|8 : cgctatataaaaacacaaaatccttttcaattattcattttacaacaccatgagacaccgactgagaaattcgcgaaacaacaattatactccaatactgagatgaaaattctttattcttaacaatgAATTACAA-C-ATGT-ATAAACTAAATACAA-TTAG-----------A-ATTACAGT-ACAAAAC-A--TGTAT----AAA--AAGAAATACATGT----GAGA-T-TAC-AGA---TA-CATATACACCCATG-TA-A-C-AAAAT-AC-A-TAGTAAAGT-ACA-AAA----T-T-acaaaatacatagtaaagtacaaaatttatgaac
gi|9 : cgctatataaaaacacaaaatccttttcaattattcattttacaacaccatgagacaccgactgagaaattcgcgaaacaacaattatactccaatactgagatgaaaattctttattcttaacaatgT-ACA-AA-----T-T-A--G--A--AAA-GTAG--T--AT--G-ACTA----GAAAAAT-T--CT----AAGTAC-AAC-AA-T--ACAA-A-T-GT---AAAGTTA-TGGT-AAAAAATCCA----ACTT-GGCCTTGT-AAG-GG-TCAAC-AGTCC-CACAAGGAAGATGAGTCTT-CCCT-GTGAAGATGAAT-TTTCCTA-----A--ATTTATTT-T-AT-TTCAT-TATACACCT-TGTACGT---TATACA---TGTAGT-TAtatgaac
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTATTTATGCCTTCGTCCTTCATTGTACAACAAAACACCGATTGGAATTGCGAAAAATTTTTAGTCTTTTAATTTTCTTTAGATAAAATAAACATGTATATGATAAATATAAGGGAATTAAAAGAAAGTATTTAAGAGAGGCTACACTAAATGATATCAATATACAATATTGCAGAAGAAAATT
Unaligned ( gi|11 ): AATTTATGCCTTCCTCCTTCATTTTACACCACAAACACCGACCTAAAATTGGCGCGCGGAAAAAAAAATTTACTCAAGACTGAGATAAAATTTTTATAGA
Unaligned ( gi|12 ): ATTTATGGCCTTCCTCCTTCATTTTAACAACACAAAACACGACTGAAAATTGAAAAATTTTTATCAATACCGGAGATTAAAATTTTTAAA
Unaligned ( gi|13 ): TTATGCCTACCTCCTTCATTTTACAACACAAACACCGACTGAAATTGCGAAAAATTTTACTCACATACTGAGATATAAATTTTT
Unaligned ( gi|14 ): TTTTATGCCTTCCTCCTTCTTGTAGCAACACAACACGACTGAAATTGCGAACAAATTTTACTCAATACTGAGATAATTTTAT
Unaligned ( gi|16 ): ATATTTTTGTACCTTCCTCCTTCATTTTACAACACAACACCGACTGAAATTGCCAAAAATTTT
Unaligned ( gi|17 ): TGAACAAGTTAGTTTATGCCTTCCTCCTTCATTTTACAACA
Alignments
lowQualScore : 1 333333333333333333333 11 11 222222 11111 11111 11 1111111 222222 11 1 1 22 11 1 222 2222 1 1 1 1 1 1 77777777777777777 111 2222222 1 1 222 1 1 22 1 1111 1 222222 3333 22 1 1
lowQualScore : 5 5 5 0 999999999999999999999 4 8 4 99 8888 55 11 8888 8 4 44 4 8 777 4 1 777777 4 9 5 5 5 5 5 5 3 4 4 44444 3 3 00000 55 00 99999 55 4 7777777 55 8888 4 4 55 444 4 111111 11 0 5 77 5 5 5 6 8 2 3 3 2 0 2 2 55 22 66 0 3 3 66 1 333 0000 1 0 7 3 3 6 7 3 3 3 66666666666666666 7 6 777 8888888 7 3 3 333 6 6 7 3 7 3 6 7 00 3 7777 3 6 777777 6 5555 00 7 7 3 5
lowQualScore : . . . . ..................... . . . .. .... .. .. .... . . .. . . ... . . ...... . . . . . . . . . . . ..... . . ..... .. .. ..... .. . ....... .. .... . . .. ... . ...... .. . . .. . . . . . . . . . . . . .. .. .. . . . .. . ... .... . . . . . . . . . . ................. . . ... ....... . . . ... . . . . . . . . .. . .... . . ...... . .... .. . . . .
lowQualScore : 0 0 0 0 999999999999999999999 0 0 0 55 5555 55 00 5555 0 0 33 0 0 000 0 0 000000 0 8 0 0 0 0 0 0 2 4 0 88888 6 6 77777 55 33 33333 55 0 7777777 55 5555 0 0 55 999 4 888888 99 0 0 55 0 0 7 7 0 5 2 2 5 0 5 5 00 55 55 0 2 2 55 0 222 8888 2 0 3 3 3 7 3 3 3 3 77777777777777777 3 7 777 0000000 3 3 3 333 7 7 3 3 3 3 7 3 00 3 3333 3 7 000000 7 3333 00 3 3 3 0
consensus : AATAAAAA-C-ATGT-ATAA-CAAAATACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TAC-A-A---TA-CANA------CATG-TATA-C-AAAAT-AC-A-T-GTAAAGT-ACA-AAA----T-T-A--G--A--AAA-GTAG--T--AT--G-ACTA----AGAAAATGT--CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT---AA-GTTAATGGT-AAAAA-TCCACC-AACTT-GGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTAC-CCCAC-ATATATGTAT-ATATACATATGTATATCTATNTATCT-A-TATATA---TATAAT-TATATGTAA-TGTATCACATT-GCCCGGCAATAAAT-ATA-CAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------AGTGAAAACGTTTGATCCTCAG-A-CTTATTT---ACATTTAAAAACTTAAA-GGC-AATACACA---TTCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCA-CACACA-CACAGCATA-T--T-CTGAGGAGATG---CTTGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAG-ATTATGGCGGGGTGGATA
Reference ( family-164 ) : AATAAAAA-C-ATGT-ATAA-CAAAATACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TAC-A-A---TA-CANA------CATG-TATA-C-AAAAT-AC-A-T-GTAAAGT-ACA-AAA----T-T-A--G--A--AAA-GTAG--T--AT--G-ACTA----AGAAAATGT--CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT---AA-GTTAATGGT-AAAAA-TCCACC-AACTT-GGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTAC-CCCAC-ATATATGTAT-ATATACATATGTATATCTATNTATCT-A-TATATA---TATAAT-TATATGTAA-TGTATCACATT-GCCCGGCAATAAAT-ATA-CAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------AGTGAAAACGTTTGATCCTCAG-A-CTTATTT---ACATTTAAAAACTTAAA-GGC-AATACACA---TTCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCA-CACACA-CACAGCATA-T--T-CTGAGGAGATG---CTTGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAG-ATTATGGCGGGGTGGATA
gi|1 : AATAAAAA-C-ATGT-ATAA-CAAAATACATAGTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-TATACCA-A---TA-CATA------CATGGTATA-C-AAAATTAC-A-T-GTAA-GT-ACA-AAAA---T-T-A--G--G--AAA-ACAG--TGTAT--G-ACTA-----GAAAATGT--CT----AAGTACCAACCAAAT--ACAA-A-T-GCTGAAA-GTTA-TGGT-AAAAA-TC-ACCGAACTTTGGCCT-GT-A-G-GGGTCAACCAGTCC-CACAAG-AAAATGAG-CTTCCCTA-TTGAAGATGAATCTTTCCTACGCCCAC-ATATATGTAT-ATATACATATGTATATCTATATATCTTA-TATATA---TATATT-TATATGTAA-TGAATCACATT-GCCCGGCAATAAAT-ATACCAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------A--GAAAACGTTTGAT-CTCAG-A-CTTA--T---ACATTTAAAAACTTAAAGGGCAAATACACATGGTTCTCCCAATTGGACTTTTGGTTAAGA--TTTA-TCATTTGTGAT-TT--TATCTCTTGAGTTGAATGGAAGTTTTTCCACCACACACCACAGCATATT--T-CTGAGGA-ATGCCCCTTGTAGTGTATGGTTCTGAT--GGTAAAAGTGCTCAGAATTA
gi|15 : ac-AAA----T-T-A--G--A--AAAAGTAG--G--AT--GGACTA-----GAAAATGT--CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT---A---TTAATagagtgcatattttgc
gi|2 : cATAAAAA-CGATGT-ATAA-CAA--------------------------TTACAAT-ACAAA-CGA--TGTAT----AAC--AA--AATACATGT----AA-A-TGTCC-A-AAATTAGCATAT-----CATG-TATA-CGAAAAT-AC-A-T--TAA-GT-ACA-AAA----T-T-A--G--A--AA---TAGATT--AT--G-ACTA----G---AATGT--CT----AAGTAC-AAC-AAATTAACAA-A-TTGT---AAAGT--ATGGC-TAAAG-TCCAC--AACTT-GGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGGAAA-TGAGTCTTCCCCTAGTGAAGAT-AATCTTTCCTAC-CCCAC-ATATATG-ATAATATACCTATGTATATCTATCTATCT-ACTATAT----TATAAT-TA-ATGTAA-TGTATCACATT-G-CCGGC-ATAAATAATA-CAAAAAAATTATTTCAAAGATATAGACAAACACATGTGTGAGTGTGTAGTGAAAACG--TGATCCTCAGTATCTTATTTCCCAC-TCTTAAAACTTAAA-GGC-AATACACA---GTCT-CCAATT-GACTTTTGG-T-AGATGTTTATTCATTT-TTATATTGGTATCTCTTGAGTTG-ATGGAAGTTTTT----CACACA-CACAGCACA-TGATGCTGATGTGATA---TGTGTTGTGTAT--TTCTGATTGGGT-AAAGTGCTCAA-TTTATGGC-GGGTGGATAaaagtt
gi|3 : tacAATAAAAA-C-ATGT-ATAA-CAAATTACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TAC-A-A---TA-CATA------CATG-TATA-C--AATT-AC-A-G-TTAAAGTCACA-AAT----T-T-AACG--A--AAA-ATAG-----AT--G-ACTA----AGAAAATG---CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT---AA-GTTAATGGT-AAAAA-TCCACC-AACTT-GGCCTTGT-AAGCGGGTCA---AATCCACACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTA--CCCACAATATATGTAT-ATATACATATGTATATC-ATCTATCT-A-TATATAACGTATAATGTATATGTAATTGTATCACATTGGCGCGGCAATAAAT-ATA-CAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------AGT-AAAACGTTTGATCCTCAG-A-CTT-TTT---ACATTTAAAAACTTAAA-GGC-AATACACA---TTCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCA-CACACA-CACA-CATA-T--T-CTGAGGAGATG----TTGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAG-ATTATGGCGGGGTGGATAgtgggtcta
gi|4 : AATACAAATC-A-GT-ATAA-CAAAATACAT-GTC------------A---TCCAAT-AAAAA-C-AC-TGTAT----A----AA--AATACATG------A-A-T-----A-A---TA-CAAC------CATG-TA-A-C-AAAAT-ACAA-T-GTAAA-T-ACATAAACATGT-T-A--T--AACAAA-ATAC--T--AC--T-ACCACAATACAACATGT--ATAACAAAATAC-ATT-AAAT--ACAA-c
gi|4 : gtgtataatcgcctatttatccttcctccttcattttcaacacaaacaccgactcgaattggcgaaattttacatccactatccgagaaatcaattttataaaaaagAAA-C-ATGTTATAA-CAAAATAC----TA------------CTACCACAAT-ACAA--C-A--TGTAT----AAC--AA--AATACAT-T----AA-A-T--AC-A-A---C--CACG------CAT--TAAA-C-AAAAT-AC-ATT-GTAAAGT--CA-AA-------T-A--GAAA--AAA-GTAG--T--A---G-ACT-----AGAAAATGTCCCT----AAGAAC-AAC-AAAT--ACAACACT-GC---CG-CTTA---GT-AAAAA-TCCCCC-A--T---GCCCTGTCAAG-GGccacgcattaaacaaaatacattgtaaagtcaaatagaaaaaagtagtagactagaaaatgtccctaagaacaacaaatacaacactgccgcttagtaaaaatcccccatgccctgtcaaggg
gi|5 : gtgtataatcgcctatttatccttcctccttcattttcaacacaaacaccgactcgaattggcgaaattttacatccactatccgagaaatcaattttataaaaaagaatacaaatcagtataacaaaatacatgtcatccaataaaaacactgtataaaaatacatgaataatacaaccatgtaacaaaatacaatgtaaatacatAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATTT----AA-A-TGTCC-A-A---TA--AAA-------ATG-T
gi|5 : aatcgattagtttggataattactttagtatttatgccttcctcctacattttacacacacaaacaccgactgaaattgcgaaaattttactcaatactgagataaaatttttataaaaag----T-T-A--A--A--CAACGTAG--T--AT--G-AC------AGAAAATGT--CT----AAGCAT-AA----AT--ACAA---T-GT---AAAGTTAATGGTCAAGAA-TCCACC-AACTT-GGCCTTGT-AA--GGGTCAAC-Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaacaacgtagtatgacagaaaatgtctaagcataaatacaatgtaaagttaatggtcaagaatccaccaacttggccttgtaagggtcaacac
gi|6 : aatcgattagtttggataattactttagtatttatgccttcctcctacattttacacacacaaacaccgactgaaattgcgaaaattttactcaatactgagataaaatttttataaaaagaatacaaacatgtataacaaaatacatttaaatgtccaataaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATATAAA-C-ATGT-ATCA-CAAAATACAT-GTACATGTAATGTAAA-ATTATAATTGCGAA-C-AATTTTACTCGAAACTGAG--ATTAAATGTTTATAA-A-A-CAG-A-A---TA-CAAA------CTTG-TATAAC-AAAAT-GC-A-T-GTGAAGT-AAA-ACA----T-T-AT-A--A--AAA-GTAT--T--AT--G-ACAA----GAAAAAAAT--CT----AACTTC-AAC-AAAT--ACAA-A-T-GTC--AA-GTT-ATGTT-AAAAG-TCAACA-AAATT-GGCCTTGT-GAG-GGGTTAAC-AGTCC-Cc
gi|7 : ctgtacgatacaaacaccgattggaattgcgaaaacatttactcaaaactgagataattttttttataaaaaagAAT-GCAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-AAT-TAC-A-A---TA-CAAA------CATG-TAAA-C-AAAAT-AC-A-T-GTAAAAT-ACA-AAA----TATAA--G--A--AAA---AG--T--ATTAG-ACT-----AGAAAATTT--CT----AACTAC-AAC-AAAT--ACAA-A-T-GCA--AA-GTT-ATGGTAAAAAA-TCCACC-AACTT-GGCCTTGT-taa
gi|8 : tgcataagtttatctatgccttcctccttcattttacaacacaaacaccgactgaaattgcgaaaaattttactcaatactgagataatttttttttataaaaagAATTACAA-C-ATGT-ATAAACTAAATACAA-TTAG-----------A-ATTACAGT-ACAAAAC-A--TGTAT----AAA--AAGAAATACATGT----GAGA-T-TAC-AGA---TA-CATATACACCCATG-TA
gi|8 : cgctatataaaaacacaaaatccttttcaattattcattttacaacaccatgagacaccgactgagaaattcgcgaaacaacaattatactccaatactgagatgaaaattctttattcttaacaatgAATTACAA-C-ATGT-ATAAACTAAATACAA-TTAG-----------A-ATTACAGT-ACAAAAC-A--TGTAT----AAA--AAGAAATACATGT----GAGA-T-TAC-AGA---TA-CATATACACCCATG-TA-A-C-AAAAT-AC-A-TAGTAAAGT-ACA-AAA----T-T-acaaaatacatagtaaagtacaaaatttatgaac
gi|9 : cgctatataaaaacacaaaatccttttcaattattcattttacaacaccatgagacaccgactgagaaattcgcgaaacaacaattatactccaatactgagatgaaaattctttattcttaacaatgT-ACA-AA-----T-T-A--G--A--AAA-GTAG--T--AT--G-ACTA----GAAAAAT-T--CT----AAGTAC-AAC-AA-T--ACAA-A-T-GT---AAAGTTA-TGGT-AAAAAATCCA----ACTT-GGCCTTGT-AAG-GG-TCAAC-AGTCC-CACAAGGAAGATGAGTCTT-CCCT-GTGAAGATGAAT-TTTCCTA-----A--ATTTATTT-T-AT-TTCAT-TATACACCT-TGTACGT---TATACA---TGTAGT-TAtatgaac
blockSeqs : T G T A ATGTACATGTAATGTAAAA T A G AT TCGA TG GA TTAT G A GT . G AAT G T TACACC . T A G . A T A A C T ACATG A A ACG AC AG ATT TA G ACAATAC CC AACA . . TA CAC T AAA AA C A C . C C . A G A T C A G C C CA TA A A A TA C AC AACG A G T T G C A A . A TGTGTGAGTGTGTAGTG T C TAT ATTTCCC A . . . C G T . T T G A GG . CCA . G TGATG G T G T A . G
blockSeqs : . . . A AATTAGAA . A . C . . GA . G . GT . G . . T TACACC . T . . . . . . A . . A . . GAA . CG G . . AAG . . . . . A . AAA AA A . C . . . . . G A T C . G C . C A . A A A C A A A . . . . . . . . . AGT . C A TTT . . . . . . . . T . . A G . . . . TT G . . T . .
blockSeqs : . . . . AATTAGAA . . . . . . . . . . T . . . . A T . A . . . . . . A . . A . . TA . A T . . AGA . . . . . A . CAA AA . . C . . . . . G . T . . . . . . T . . . T G . . G .
blockSeqs : . . . . ATGTAAA . . . . . . . . . . C . . . . C . . T . . . . . . A . . T . . G . A T . . AGA . . . . . A . AAA A . . A . . . . .
blockSeqs : . . . . ATGTCA . . . . . . . . . . T . . . . A . . A . . . . . . A . . A . . G . G T . . AG . . . . . A . AAA A . . C . . . .
blockSeqs : . . . . TACTA . . . . . . . . . . T . . . . A . . . . . . . . . A . . A . . T . G T . . AG . . . . . A . AA A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . T . . . . A . . . . . . . . . . . . A . . A . G T . . AG . . . . . A . CG A . . . . .
blockSeqs : . . . . . . . . . . . . . . . T . . . . . . . G . . T . . AG . . . . . . . A A
blockSeqs : . . . . . . . . . . . . . . . T . . . . . . G . . . . . AG . . . . .
blockSeqs : . .
blockSeqCons : T* A**** T**** AAA*** C*
originalCons : AATAAAAA-C-ATGT-ATAA-CAAAATACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TAC-A-A---TA-CANA------CATG-TATA-C-AAAAT-AC-A-T-GTAAAGT-ACA-AAA----T-T-A--G--A--AAA-GTAG--T--AT--G-ACTA----AGAAAATGT--CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT---AA-GTTAATGGT-AAAAA-TCCACC-AACTT-GGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTAC-CCCAC-ATATATGTAT-ATATACATATGTATATCTATNTATCT-A-TATATA---TATAAT-TATATGTAA-TGTATCACATT-GCCCGGCAATAAAT-ATA-CAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------AGTGAAAACGTTTGATCCTCAG-A-CTTATTT---ACATTTAAAAACTTAAA-GGC-AATACACA---TTCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCA-CACACA-CACAGCATA-T--T-CTGAGGAGATG---CTTGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAG-ATTATGGCGGGGTGGATA
finalCons : AATAAAAA-C-ATGT-ATAA-CAAAATACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-TT-AC-A-A---TA-CANA------CATG-TATA-C-AAAAT-AC-A-T-GTAAAGT-ACA-AAA----T-T-A--G--A--AAA-GTAGT----AT--G-ACTA----AGAAAATGT--CT----AAGTAC-AAC-AAAT--ACAA-A-T-GTAAA---GTTAATGGT-AAAAA-TCCACC-AACTT-GGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTAC-CCCAC-ATATATGTAT-ATATACATATGTATATCTATNTATCT-A-TATATA---TATAAT-TATATGTAA-TGTATCACATT-GCCCGGCAATAAAT-ATA-CAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------AGTGAAAACGTTTGATCCTCAG-A-CTTATTT---ACATTTAAAAACTTAAA-GGC-AATACACA---TTCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCA-CACACA-CACAGCATA-T--T-CTGAGGAGATG---CTTGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAG-ATTATGGCGGGGTGGATA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTATTTATGCCTTCGTCCTTCATTGTACAACAAAACACCGATTGGAATTGCGAAAAATTTTTAGTCTTTTAATTTTCTTTAGATAAAATAAACATGTATATGATAAATATAAGGGAATTAAAAGAAAGTATTTAAGAGAGGCTACACTAAATGATATCAATATACAATATTGCAGAAGAAAATT
Unaligned ( gi|11 ): AATTTATGCCTTCCTCCTTCATTTTACACCACAAACACCGACCTAAAATTGGCGCGCGGAAAAAAAAATTTACTCAAGACTGAGATAAAATTTTTATAGA
Unaligned ( gi|12 ): ATTTATGGCCTTCCTCCTTCATTTTAACAACACAAAACACGACTGAAAATTGAAAAATTTTTATCAATACCGGAGATTAAAATTTTTAAA
Unaligned ( gi|13 ): TTATGCCTACCTCCTTCATTTTACAACACAAACACCGACTGAAATTGCGAAAAATTTTACTCACATACTGAGATATAAATTTTT
Unaligned ( gi|14 ): TTTTATGCCTTCCTCCTTCTTGTAGCAACACAACACGACTGAAATTGCGAACAAATTTTACTCAATACTGAGATAATTTTAT
Unaligned ( gi|16 ): ATATTTTTGTACCTTCCTCCTTCATTTTACAACACAACACCGACTGAAATTGCCAAAAATTTT
Unaligned ( gi|17 ): TGAACAAGTTAGTTTATGCCTTCCTCCTTCATTTTACAACA
Alignments
lowQualScore : 1 333333333333333333333 11 11 222222 11111 11111 11 111111 11 1 1 11111111 1 222 2222 1 1 111 1 1 1 77777777777777777 111 2222222 1 1 222 1 1 22 1 1111 1 222222 3333 22 1 1
lowQualScore : 5 5 5 0 999999999999999999999 4 8 4 99 8888 55 11 8888 8 4 44 4 8 777 4 1 777777 4 9 5 5 5 5 5 5 3 4 4 44444 3 44444 55 00 99999 55 4 999999 55 8888 4 4 55 444 4 66 1 44 0 5 77 5 5 5 6 8 2 3 3 2 0 2 2 77777777 66 0 3 3 66 1 333 0000 1 0 7 3 888 7 3 3 3 66666666666666666 7 6 777 8888888 7 3 3 333 6 6 7 3 7 3 6 7 00 3 7777 3 6 777777 6 5555 00 7 7 3 5
lowQualScore : . . . . ..................... . . . .. .... .. .. .... . . .. . . ... . . ...... . . . . . . . . . . . ..... . ..... .. .. ..... .. . ...... .. .... . . .. ... . .. . .. . . .. . . . . . . . . . . . . ........ .. . . . .. . ... .... . . . . ... . . . . ................. . . ... ....... . . . ... . . . . . . . . .. . .... . . ...... . .... .. . . . .
lowQualScore : 0 0 0 0 999999999999999999999 0 0 0 55 5555 55 00 5555 0 0 33 0 0 000 0 0 000000 0 8 0 0 0 0 0 0 2 4 0 88888 6 77777 55 33 33333 55 0 444444 55 5555 0 0 55 999 4 11 8 66 0 0 55 0 0 7 7 0 5 2 2 5 0 5 5 22222222 55 0 2 2 55 0 222 8888 2 0 3 3 333 3 3 3 3 77777777777777777 3 7 777 0000000 3 3 3 333 7 7 3 3 3 3 7 3 00 3 3333 3 7 000000 7 3333 00 3 3 3 0
consensus : AATAAAAA-C-ATGT-ATAA-CAAAATACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TAC-A-A---TA-CANA------CATG-TATA-C-AAAAT-AC-A-T-GTAAAGT-ACA-AAA----T-TA--G--A--AAA-GTAG--T--AT--G-ACTA----GGAAAATGT--CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT--AAAGTTAATGGT-AAAAA-TCCACC-AACTT-GGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTAC-CC-CACATATATGTAT-ATATACATATGTATATCTATNTATCT-A-TATATA---TATAAT-TATATGTAAT-GTATCACATTG-C-CGGCAATAAAT-ATA-CAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------AGTGAAAACGTTTGATCCTCAG-A-CTTATTT---ACATTTAAAAACTTAAA-GGC-AATACACA---TTCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCA-CACACA-CACAGCATA-T--T-CTGAGGAGATG---CTTGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAG-ATTATGGCGGGGTGGATA
Reference ( family-164 ) : AATAAAAA-C-ATGT-ATAA-CAAAATACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TAC-A-A---TA-CANA------CATG-TATA-C-AAAAT-AC-A-T-GTAAAGT-ACA-AAA----T-TA--G--A--AAA-GTAG--T--AT--G-ACTA----AGAAAATGT--CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT--AAAGTTAATGGT-AAAAA-TCCACC-AACTT-GGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTAC-CC-CACATATATGTAT-ATATACATATGTATATCTATNTATCT-A-TATATA---TATAAT-TATATGTAAT-GTATCACATTGCC-CGGCAATAAAT-ATA-CAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------AGTGAAAACGTTTGATCCTCAG-A-CTTATTT---ACATTTAAAAACTTAAA-GGC-AATACACA---TTCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCA-CACACA-CACAGCATA-T--T-CTGAGGAGATG---CTTGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAG-ATTATGGCGGGGTGGATA
gi|1 : AATAAAAA-C-ATGT-ATAA-CAAAATACATAGTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-TATACCA-A---TA-CATA------CATGGTATA-C-AAAATTAC-A-T-GTAA-GT-ACA-AAAA---T-TA--G--G--AAA-ACAG--TGTAT--G-ACTA-----GAAAATGT--CT----AAGTACCAACCAAAT--ACAA-A-T-GCTGAAAGTTA-TGGT-AAAAA-TC-ACCGAACTTTGGCCT-GT-A-G-GGGTCAACCAGTCC-CACAAG-AAAATGAG-CTTCCCTA-TTGAAGATGAATCTTTCCTACGCC-CACATATATGTAT-ATATACATATGTATATCTATATATCTTA-TATATA---TATATT-TATATGTAAT-GAATCACATTGCC-CGGCAATAAAT-ATACCAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------A--GAAAACGTTTGAT-CTCAG-A-CTTA--T---ACATTTAAAAACTTAAAGGGCAAATACACATGGTTCTCCCAATTGGACTTTTGGTTAAGA--TTTA-TCATTTGTGAT-TT--TATCTCTTGAGTTGAATGGAAGTTTTTCCACCACACACCACAGCATATT--T-CTGAGGA-ATGCCCCTTGTAGTGTATGGTTCTGAT--GGTAAAAGTGCTCAGAATTA
gi|15 : ac-AAA----T-TA--G--A--AAAAGTAG--G--AT--GGACTA-----GAAAATGT--CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT--A---TTAATagagtgcatattttgc
gi|2 : cATAAAAA-CGATGT-ATAA-CAA--------------------------TTACAAT-ACAAA-CGA--TGTAT----AAC--AA--AATACATGT----AA-A-TGTCC-A-AAATTAGCATAT-----CATG-TATA-CGAAAAT-AC-A-T--TAA-GT-ACA-AAA----T-TA--G--A--AA---TAGATT--AT--G-ACTA----G---AATGT--CT----AAGTAC-AAC-AAATTAACAA-A-TTGT--AAAGT--ATGGC-TAAAG-TCCAC--AACTT-GGCCTTGT-AAG-GGGTCAAC-AGTCC-CACAAGGAAA-TGAGTCTTCCCCTAGTGAAGAT-AATCTTTCCTAC-CC-CACATATATG-ATAATATACCTATGTATATCTATCTATCT-ACTATAT----TATAAT-TA-ATGTAAT-GTATCACATTG-C-CGGC-ATAAATAATA-CAAAAAAATTATTTCAAAGATATAGACAAACACATGTGTGAGTGTGTAGTGAAAACG--TGATCCTCAGTATCTTATTTCCCAC-TCTTAAAACTTAAA-GGC-AATACACA---GTCT-CCAATT-GACTTTTGG-T-AGATGTTTATTCATTT-TTATATTGGTATCTCTTGAGTTG-ATGGAAGTTTTT----CACACA-CACAGCACA-TGATGCTGATGTGATA---TGTGTTGTGTAT--TTCTGATTGGGT-AAAGTGCTCAA-TTTATGGC-GGGTGGATAaaagtt
gi|3 : tacAATAAAAA-C-ATGT-ATAA-CAAATTACAT-GTA------------A-ATTACAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-A-T-TAC-A-A---TA-CATA------CATG-TATA-C-AAT-T-AC-A-G-TTAAAGTCACA-AAT----T-TAACG--A--AAA-ATAG-----AT--G-ACTA----AGAAAATG---CT----AAGTAC-AAC-AAAT--ACAA-A-T-GT--AA-GTTAATGGT-AAAAA-TCCACC-AACTT-GGCCTTGT-AAGCGGGTCAA---ATCCACACAAGGAAAATGAGTCTTCCCCT-GTGAAGATGAATCTTTCCTAC-CCACA-ATATATGTAT-ATATACATATGTATATC-ATCTATCT-A-TATATAACGTATAATGTATATGTAATTGTATCACATTGGCGCGGCAATAAAT-ATA-CAAAAAAGTTATTTCAAAGATATAGAC-AACACA-------------AGT-AAAACGTTTGATCCTCAG-A-CTT-TTT---ACATTTAAAAACTTAAA-GGC-AATACACA---TTCTCCCAATTGGACTTTTGGTT-AGATGTTTA-TCATTTGTGATATT-GTATCTCTTGAGTTG-ATGGAAGTTTTTCCA-CACACA-CACA-CATA-T--T-CTGAGGAGATG----TTGTAGTGTAT-GTTCTGATTGGGTAAAAGTGCTCAG-ATTATGGCGGGGTGGATAgtgggtcta
gi|4 : AATACAAATC-A-GT-ATAA-CAAAATACAT-GTC------------A---TCCAAT-AAAAA-C-AC-TGTAT----A----AA--AATACATG------A-A-T-----A-A---TA-CAAC------CATG-TA-A-C-AAAAT-ACAA-T-GTAAA-T-ACATAAACATGT-TA--T--AACAAA-ATAC--T--AC--T-ACCACAATACAACATGT--ATAACAAAATAC-ATT-AAAT--ACAA-c
gi|4 : gtgtataatcgcctatttatccttcctccttcattttcaacacaaacaccgactcgaattggcgaaattttacatccactatccgagaaatcaattttataaaaaagAAA-C-ATGTTATAA-CAAAATAC----TA------------CTACCACAAT-ACAA--C-A--TGTAT----AAC--AA--AATACAT-T----AA-A-T--AC-A-A---C--CACG------CAT--TAAA-C-AAAAT-AC-ATT-GTAAAGT--CA-AA-------TA--GAAA--AAA-GTAG--T--A---G-ACT-----AGAAAATGTCCCT----AAGAAC-AAC-AAAT--ACAACACT-GC----CGCT--TAGT-AAAAA-TCCCCC-A--T---GCCCTGTCAAG-GGccacgcattaaacaaaatacattgtaaagtcaaatagaaaaaagtagtagactagaaaatgtccctaagaacaacaaatacaacactgccgcttagtaaaaatcccccatgccctgtcaaggg
gi|5 : gtgtataatcgcctatttatccttcctccttcattttcaacacaaacaccgactcgaattggcgaaattttacatccactatccgagaaatcaattttataaaaaagaatacaaatcagtataacaaaatacatgtcatccaataaaaacactgtataaaaatacatgaataatacaaccatgtaacaaaatacaatgtaaatacatAAT-ACAAA-C-A--TGTAT----AAC--AA--AATACATTT----AA-A-TGTCC-A-A---TA--AAA-------ATG-T
gi|5 : aatcgattagtttggataattactttagtatttatgccttcctcctacattttacacacacaaacaccgactgaaattgcgaaaattttactcaatactgagataaaatttttataaaaag----T-TA--A--A--CAACGTAG--T--AT--G-AC------AGAAAATGT--CT----AAGCAT-AA----AT--ACAA---T-GT--AAAGTTAATGGTCAAGAA-TCCACC-AACTT-GGCCTTGT-AA--GGGTCAAC-Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaacaacgtagtatgacagaaaatgtctaagcataaatacaatgtaaagttaatggtcaagaatccaccaacttggccttgtaagggtcaacac
gi|6 : aatcgattagtttggataattactttagtatttatgccttcctcctacattttacacacacaaacaccgactgaaattgcgaaaattttactcaatactgagataaaatttttataaaaagaatacaaacatgtataacaaaatacatttaaatgtccaataaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATATAAA-C-ATGT-ATCA-CAAAATACAT-GTACATGTAATGTAAA-ATTATAATTGCGAA-C-AATTTTACTCGAAACTGAG--ATTAAATGTTTATAA-A-A-CAG-A-A---TA-CAAA------CTTG-TATAAC-AAAAT-GC-A-T-GTGAAGT-AAA-ACA----T-TAT-A--A--AAA-GTAT--T--AT--G-ACAA----GAAAAAAAT--CT----AACTTC-AAC-AAAT--ACAA-A-T-GT--CAAGTT-ATGTT-AAAAG-TCAACA-AAATT-GGCCTTGT-GAG-GGGTTAAC-AGTCC-Cc
gi|7 : ctgtacgatacaaacaccgattggaattgcgaaaacatttactcaaaactgagataattttttttataaaaaagAAT-GCAAA-C-A--TGTAT----AAC--AA--AATACATGT----AA-AAT-TAC-A-A---TA-CAAA------CATG-TAAA-C-AAAAT-AC-A-T-GTAAAAT-ACA-AAA----TATAA-G--A--AAA---AG--T--ATTAG-ACTA-----GAAAATTT--CT----AACTAC-AAC-AAAT--ACAA-A-T-GC--AAAGTT-ATGGTAAAAAA-TCCACC-AACTT-GGCCTTGT-taa
gi|8 : tgcataagtttatctatgccttcctccttcattttacaacacaaacaccgactgaaattgcgaaaaattttactcaatactgagataatttttttttataaaaagAATTACAA-C-ATGT-ATAAACTAAATACAA-TTAG-----------A-ATTACAGT-ACAAAAC-A--TGTAT----AAA--AAGAAATACATGT----GAGA-T-TAC-AGA---TA-CATATACACCCATG-TA
gi|8 : cgctatataaaaacacaaaatccttttcaattattcattttacaacaccatgagacaccgactgagaaattcgcgaaacaacaattatactccaatactgagatgaaaattctttattcttaacaatgAATTACAA-C-ATGT-ATAAACTAAATACAA-TTAG-----------A-ATTACAGT-ACAAAAC-A--TGTAT----AAA--AAGAAATACATGT----GAGA-T-TAC-AGA---TA-CATATACACCCATG-TA-A-C-AAAAT-AC-A-TAGTAAAGT-ACA-AAA----T-Tacaaaatacatagtaaagtacaaaatttatgaac
gi|9 : cgctatataaaaacacaaaatccttttcaattattcattttacaacaccatgagacaccgactgagaaattcgcgaaacaacaattatactccaatactgagatgaaaattctttattcttaacaatgT-ACA-AA-----T-TA--G--A--AAA-GTAG--T--AT--G-ACTA----GAAAAAT-T--CT----AAGTAC-AAC-AA-T--ACAA-A-T-GT--AAAGTTA-TGGT-AAAAAATCCA----ACTT-GGCCTTGT-AAG-GG-TCAAC-AGTCC-CACAAGGAAGATGAGTCTT-CCCT-GTGAAGATGAAT-TTTCCTA------A-ATTTATTT-T-AT-TTCAT-TATACACCT-TGTACGT---TATACA---TGTAGT-TAtatgaac
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTATTTATGCCTTCGTCCTTCATTGTACAACAAAACACCGATTGGAATTGCGAAAAATTTTTAGTCTTTTAATTTTCTTTAGATAAAATAAACATGTATATGATAAATATAAGGGAATTAAAAGAAAGTATTTAAGAGAGGCTACACTAAATGATATCAATATACAATATTGCAGAAGAAAATT
Unaligned ( gi|11 ): AATTTATGCCTTCCTCCTTCATTTTACACCACAAACACCGACCTAAAATTGGCGCGCGGAAAAAAAAATTTACTCAAGACTGAGATAAAATTTTTATAGA
Unaligned ( gi|12 ): ATTTATGGCCTTCCTCCTTCATTTTAACAACACAAAACACGACTGAAAATTGAAAAATTTTTATCAATACCGGAGATTAAAATTTTTAAA
Unaligned ( gi|13 ): TTATGCCTACCTCCTTCATTTTACAACACAAACACCGACTGAAATTGCGAAAAATTTTACTCACATACTGAGATATAAATTTTT
Unaligned ( gi|14 ): TTTTATGCCTTCCTCCTTCTTGTAGCAACACAACACGACTGAAATTGCGAACAAATTTTACTCAATACTGAGATAATTTTAT
Unaligned ( gi|16 ): ATATTTTTGTACCTTCCTCCTTCATTTTACAACACAACACCGACTGAAATTGCCAAAAATTTT
Unaligned ( gi|17 ): TGAACAAGTTAGTTTATGCCTTCCTCCTTCATTTTACAACA