lowQualScore : 11111 444444444444444444444444444444444444444444444444444444444 2222 11 33 111 111111111 22222222 1 2222 333333 555555555555555 1 99999999999999999999999999999
lowQualScore : 33 33 0 3 0 22222 6 44 111111111111111111111111111111111111111111111111111111111 2 5 5 2 9999 2 555 3 55 55 66 2 00 111 5 2 33 666666666 333 2 6 11111111 3 6 0000 333333 3 44 555555555555555 7 55555555555555555555555555555
lowQualScore : .. .. . . . ..... . .. ......................................................... . . . . .... . ... . .. .. .. . .. ... . . .. ......... ... . . ........ . . .... ...... . .. ............... . .............................
lowQualScore : 99 99 3 1 4 00000 2 22 333333333333333333333333333333333333333333333333333333333 7 3 0 5 3333 7 444 1 00 77 33 7 00 000 5 7 77 444444444 666 9 2 66666666 8 0 0000 000000 7 99 999999999999999 0 00000000000000000000000000000
consensus : ATTATTAAGACCGCGGAACATTAACTGGCAA----GATTGGAA-A--T-A-T--ACAGC----GTTCGTG---AC--TG-TCATCTGTTA-AGTCAAA--GCATTTG-ACGTCAC-AAATG----AAA-AGGGCAGGTACGATTCAGCGC-GGA-CG--A-C-GTG---AAAA-C--A--TT-G-A-TTG-A-AAT-TGTAG---T-TTTGAAGTCAATTTCA--ATCCACTTT--GCA-ATTACATGTATNATTAACGNACTGTATAGCAGAAAGG----ACATAATCAAGT-GTAGCAG----CACCC
Reference ( gi|3 ) : ATTACTAAGACCACAGAATATTAATTGGCAG----GACTGGAG-A--T-A-C--ACAGT----ATTTGCG---AC--TG-TCATCTGTTGAAGTCAAA--ACATTTG-ATGTCAC-AAATGT---AAA-AGGGCAGGTATGATTCAACAC-TGA-TG--A-C--TG---AGAA-C--A--TT-G-A-TTG-A-AAT-TGTAG---TGTTTGATGTCAGTTTTG--ATCCACTTT--ATG-ATCACATATATCATTCATGGACTGTTTAGCAGATAGACATCACATTATCAGGTCGTAGTAGTTATCACCCAATGGTACATGTACCTTCATGTGACCAGCTCTAGACCAATGAAATTGACTATTATTCTTTTTAGATAATGGTGACCATTATTTGTTATTTTTTTTATACAAATTAAAGATATATTGTGTGTAGTTATT
gi|8 : ATTAC---GATCATGGAATATTAATTAGCAA----GATTGGAA-A--T-G-T--AAAGC----GTTCGTG---AT--TG-TCATCTGTTA--------------TTG-ACATCAC-CAACG----AAA-AGTACAGGTATGATTCAGCAT-GGA-CG--A-CCGTG---AAAA-C--A--TTGG-A-TTGAA-AAC-TGAAA---TTTTTTAAGTCAAATCCA--ATAAACTTTCCAT---TTACAAAT--------TGTACTGTATAACAG
gi|9 : atgaaaaataaaagaacaaatgatcacataacaatacatattgatattaattttttatgttacggtgcactgcagcTATTGAGACCGTGGAACATTAAATGACAA----GATTGGAA-A--T-AGT--GAAGA----ATTGGTG---AT--TG-CCATTTATTAGAGTTAAA---CATTCT-CCGTCAC-AA-TG----AAA-AGCGTAGGTATGATTTAGCAA-GGA-CA--A-CCGTG---AAAA-C--A-----G-G-CTT-A-AATATGTGGATTTGTTTAAgattttttttccgatt
gi|10 : caatacatattttacgcattatatgaagagtagtattataATTGAGACCGTGGAACATTAAATGACAA----GATTGGAA-A--T-AGT--GAAGA----ATTGGTG---AT--TG-CCATTTATTAGAGTTAAA---CATTCT-CCGTCAC-AA-TG----AAA-AGCGTAGGTATGATTTAGCAA-GGA-CA--A-CCGTG---AAAA-C--A-----G-G-CTT-A-AATATGTGGATTTGTTTAAaatttatgtattaacgattactgatttactaatagtaaattgtaagacaatgacgtgttgtcctat
gi|14 : TAAGACCAAAGAATACT----------------TAGAG-ACGT-A-C--ACGATTGGAATTCATG---AC--TA-ACA---------ATCAAACGACATT---ACGTCAC-AAATG----AAA-AGGACAGACACGATTCAACGC-GGA-CGA-A-CA-TG---AAAA-C--A--TG-G-ACTTG-A-AAT-TGTTG---TTTTTGAaatttatgtattaacgattactgatttactaatagtaaattgtaagacaatgacgtgttgtcctat
gi|13 : agtaccattAATACTGCAAAACATGAACTACCAA----AATTAAAG-A--T-C-C--------------TGCGT--AT--TG-CCAA--GTTAACGTAAAA--ACGTATG-ACGTCAC-AAATGC---AAA---GGTATGTACGATTCAGTAC-AGA-CG--A-C--CGT--AAAATT--AT-TT-G-A-CTA-A-AAT-TGAAG---TTTTCGA
gi|2 : aatcaagttcaAAGACCATTGAAGATCA-TTGACAGTCAAGATTGAAA-A--C-A-T--GTAG-----------------------CATATGTTGCAGACAGC--CTATTTT-ACGTCA--AAATGT---GAAGAGGGCAGATATGAATTAGTGC-AGA-CA--A-TG-TA---AAGA-C--AACGC-G-A-TTG-ATAAT-TGAAG---CCTTTGAAGTCAATTTCA--ATCAATTGT---TA-ATCACACGTATTA
gi|16 : ttaAACACCGCAGAATATTAATTGGCAA----TATTGGGG-A----A-A--ACA--------TTCTG---ACATTG--CTTTTGTTATAGTC-AA--TCACTTG-ATGTCAC-AA---T---AAA-Aaaccacaataactgatatcaggggaagatgagtgatatcttaaaaataaattgattgtcataaaaatacttgaagtataattaaacgtacacctgaatagacttaacccttgtaaaaatgatagcatgttacttagccaaagatcaaaaaagtttcccaaaggtttttgaaaagatcactatcaaataattctggcatgttagaattcatt
gi|7 : acttaAACATTGACTGAAAA----AATTGGAA-A--T-A-T--ATAGC----GTTCGTG---AC--TG-TCATCTGTT--AGTCAAA--GCACTTG-ACGTCAC-ACATG----AAA-AG----GGTATG------CAC-GGA-TG--A-CCATG---ACAA-C--A--CT-G-C-T-------------------TTTGGTGTGAATCTCA--ATCCACTTT--GTATATTGTATGTATTA-TAACAAA---TATAGCAGAAAGG----ACATAATCAAGT-GTAGCAG----CACCC
gi|17 : atgaaaacccaaagaaaattggtggaaatggggaatttcaatacatatatagatccagtcgtttttaaatctattgtttttagtaaaatgcagaaattacgaaagtgcATATTAACTGGCAA----GAATGGAA-A--A-A-G--CCAGC----ATTCGTG---AC--TC-TCGTCAG----AATCAAA--GTATCTG-ACGTCAC-A
gi|5 : ATTGGCAA----GATCGAAA-A--C-A-T--ACATT----GTTCGTG---AC--A---CATC-----------AA--ACATTTGAATA-CAC-AAATG----AAA-AGTGCGGGTACGATTCATCAA-GGA-CGTCA-G--TG---AAAA-C--A--TT-G-A-C------AT-T---------TTTTAAGTCAATTTCA--AATCACTTT--GCA-ATTGCA-ATATAATttaaaaaagaaaagcacggt
gi|6 : GGCAA----GACTGGAATA--TGA-T--ACAGC----GTTGGAG---TC--TG-TCGTCTGTTACAGTCGAA--GCAATTG-A----A--AAACGT---AA--------GGTAAGATTCGA-AG-TGAACG--A-C--CT---TGAA-CGAA--TT-GCA-TTG-A-AAT-TGTAT---T-TTTGAAGTCAATTTCA--TTCCACTTT--GCT-ATTACGTGTATAATggatatcaggcgcaaatatgttatatctcctgaaatgcattgacgatcatttattacttgtagtcaattttaagacatatatttgaataccacacctctcgtaaagaattattgtatgccacctcgcaaatctacccggcgtttttgaagagatcattcttaaatattttttgcgcgtgaactttaaataaataatttgcaatga
gi|1 : CAA----GATTGAAG-A--T-A-TTAACAGC----GTTCATGGTAAT--CGATCGTCTGTTGCAGTCAAA--G-ATCTG-ACGTCACTAAATG----AAA-AGGG-AGGTATGATTCAGTGC-AGA-CG--A-C--CGTCAAAAA-C--A--GT-GTA-CTG-A-atccaatataatgggtatcaggcgcgaacgtgtcgcggctatcttgtaaacttgatgcattaatgatcattatatgtgaataatcataaccattgtaaacaagtatgattatttgtcactttacaaagatcaaaagaatctaccataggtttttgaagaggtcatt
gi|12 : aa----GATTAGAA-A--T-A-TGTACAGA----GCTTGTG---AC--TG-TCATTCACTG---------------TG-ACATCAC-AATTG----AAA-AGGTCAGGAACGATTCAGCGC-GGA-CG--A-CAGTG---CAAA-C--A--TTGG-A-TCA-A-AAT-TGTAG---tgaaacatgtaaaattgaaagcaaaagtacaatccatttgcaattacttgtaccatgaccaatatgatggttatcaagcgcaagtagacacgaatatcttctgaaatgcattgatacttgtcgtagatttcaagatatattttgaaattatcataaccttcataaagaatcattgtgtgtcgcttcatcctaatataacatctaccagagggtgttttgtgcgttaatttttcatagataaatttgcaatgacacgataactttttgttgtttttt
gi|4 : aTCAAA--A---TTA-ATTTTACTGAATGTCGCAAA-AGTGGAGTT-TGAA-CAGCAC-AGA-TG--C-C--TGTG-AAAA-C--A--TG-GGA-TTG-A-AAG-TGTAG---T-TTTCAAGTAAATCTCACTATACACTTT--cttctttttttttaaaactcactatgcaattacatcaatcgtaaccaatatattgggt
gi|19 : ATCTG-ACGTCAC-AAA-G----AAA-AGGGCAGG-ACGATCCCATGCATG--TG--G-CCGTG---AAAA-T--A--TT-G-taagtatcaggacaaatagtgtggttatcaatttaattatcatgcgtaaaaatgtagcatcttctaaaaattgataagcattaaatacttgtaataggattcaagatatcatgtcacttcataaaaatgaaaaaaaggtctaaatctacatgtaccacaggattttgagagatcactatcaaatgatattatttgtgcaaaaacatttcgtaaataatttgcaatgacaccaattcatgtctgttgtttttt
gi|15 : tgttAC-AAATG------A-AAGACAGACACGATTCAACGC-GGA-CG--AACA-TG---AAAA-T--A--TA-G-ACTTG-A-AAT-TGTTG---TTTTTGAAGTGAATCTCT--ATCCACTTT--GCA-ATTTCATGTATCATgact
gi|11 : A-CG--A-T--TT---AAAA-C--A--TG-GGA-TCA-A-AGT-TAGGG---TGTTTGAAGTCAATTTCA--ATCCAATTT--GCA-ATTACATataaataatataatgggtatcagacgcaaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TAGCATGTTACTTAGCCAAAGATCAGAAAAAGTTTCCCAAAGGTTTTGAAAAGATCACTATCAAATAATTTCTGCATGTTAGAATTCA
Unaligned ( gi|20 ): AATATTATCATTATATAAATTATAAACAGTGTGTTATT
Alignments
lowQualScore : 1111 2222222222 111111 2 11111 111111 11111 4444 2 4444
lowQualScore : 4 1 777 4 666 0 2 33 2222 22 1 555 33 55 5555555555 333333 88 2 2 0 2 0 7 5 66666 22222 7 5 44 2 8 33 333333 66666 0 555 7777777 0 7 3 3 99 0 1 66 88888 6 2222 4 0 2222
lowQualScore : . . ... . ... . . .. .... .. . ... .. .. .......... ...... .. . . . . . . . ..... ..... . . .. . . .. ...... ..... . ... ....... . . . . .. . . .. ..... . .... . . ....
lowQualScore : 4 7 000 0 444 4 9 11 6666 99 2 000 99 99 1111111111 666666 88 5 5 9 5 0 5 0 22222 55555 5 3 22 7 0 33 555555 99999 8 888 6666666 2 3 3 3 22 4 0 77 44444 4 5555 0 0 5555
consensus : ATTATTAAG-ACCGCGGAA---CA-TTA---ACTGGCAAGATTGGAA-AT-A-T--ACAGCGTTCGTG---AC--TG-TCATCTGTT-A-A-GTCAAA--GC--ATTTGACGTCAC-AA-ATG-AAAAGGGCAGGTACGATTCAGCGCGGACG-ACC-GT-GAAAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----T-TTT-G---AAGTC--AATTTC---A--ATCCACTTTG-CA-ATTAC--ATGTATNAT-TAATAAACTGTATAGCAGAAAGGCATCACATNATCAGGTCGTAGCAGTTATCACCC
Reference ( family-1620 ) : ATTATTAAG-ACCGCGGAA---CA-TTA---ACTGGCAAGATTGGAA-AT-A-T--ACAGCGTTCGTG---AC--TG-TCATCTGTT-A-A-GTCAAA--GC--ATTTGACGTCAC-AA-ATG-AAAAGGGCAGGTACGATTCAGCGCGGACG-A-C-GT-GAAAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----T-TTT-G---AAGTC--AATTTC---A--ATCCACTTTG-CA-ATTAC--ATGTATNAT-TAACGNACTGTATAGCAGAAAGG----ACATAATCAAGT-GTAGCAG----CACCC
gi|1 : CAAGATTGAAG-AT-A-TTAACAGCGTTCATGGTAAT--CGATCGTCTGTT-GCA-GTCAAA--G---ATCTGACGTCACTAA-ATG-AAAAGGG-AGGTATGATTCAGTGCAGACG-ACC-GTCAAAAACAGTGTA--CT-G-A--TG-A-AACATGTAA----A-ATT-G---AAAGCAAAAGTAC---A--ATCCA-TTTG-CA-ATTAC--TTGTACCAT-
gi|10 : aaATTGAG-ACCGTGGAA---CA-TTA---AATGACAAGATTGGAA-AT-AGT--GAAGAATTGGTG---AT--TG-CCATTTATT-AGA-GTTAAA---C--ATTCTCCGTCAC--A-ATG-AAAAGCGTAGGTATGATTTAGCAAGGACA-ACC-GT-GAAAAC-----A-----G-G-CTT-A-AATATGTGG----A-TTT-GTTTAA-----AATTT-------ATGTA-TTAA-CG-ATTACTGATTTACTAA-TAGTAAATTGTAgaccaatatgatggttatcaagcgcaagtagacacgaatatcttctgaaatgcattgatacttgtcgtagatttcaagatatattttgaaattatcataaccttcataaagaatcattgtgtgtcgcttcatcctaatataacatctaccagagggtgttttgtgcgttaatttttcatagataaatttgcaatgacacgataactttttgttgtttttt
gi|11 : ACG-A-T-TT--AAAAC-----A--TG-GGA-TCA-A-AGT-TAGGG----TGTTT-G---AAGTC--AATTTC---A--ATCCAATTTG-CA-ATTAC--ATGCAagacaatgacgtgttgtcctat
gi|12 : AGATTAGAA-AT-A-TGTACAGAGCTTGTG---AC--TG-TCAT-----------TCA-----C---TGTGACATCAC-AA-TTG-AAAAGGTCAGGAACGATTCAGCGCGGACG-A-CAGT-GCAAAC-----A--TTGG-A-TCA-A-AAT-TGTAGCTTCT-TTT--------------TTTTTAAA--ACTCACTATG-CA-ATTAC--ATgtgggtattggtatcaggtacaaacatgtgatatcttctgaaatgcatggatgatcattgaatacctgcagtaattcttaagacaaatattcatatttgcttatttgtgtgcact
gi|13 : AAT-ACTGCAAAA---CA-TGA---ACTACCAAAATT--AA-AG-A-T--CCTGCGT--------AT--TG-CCAA--GTT-A-ACGTAAAA--AC--GTATGACGTCAC-AA-ATG-CAAA-GGTATGTACGATTCAGTACAGACG-ACC-GT-AAAATT-----AT-TT-G-A-CTA-A-AAT-TGAAG----T-TTT-caatcgtaaccaatatattgggt
gi|14 : aatcaagttcaTTAAG-ACCAAAGAA---TACTTAGAGACGTACACGATTGGAA---------------TTCATG---AC--TA-ACA-----------ATCAAACGAC--ATT--ACGTCAC-AA-ATG-AAAAGGACAGACACGATTCAACGCGGACGAA-C-AT-GAAAAC-----A--TG-G-ACTTG-A-AAT-TGTTG----T-TTT-cga
gi|15 : agtaccatAC-AA-ATG-AAA--GACAGACACGATTCAACGCGGACG-AAC-AT-GAAAAT-----A--TA-G-ACTTG-A-AAT-TGTTG----T-TTTTG---AAGTG--AATCTC---T--ATCCACTTTG-CA-ATTTC--ATGTATCATATAAtga
gi|16 : TTAAACACCGCAGAA---TA-TTA---ATTGGCAATATTGGGG-AA-A----ACA---TTC-TG---ACATTG--CTTTTGTT-ATA-GTCAA---TC--ACTTGATGTCAC--A-ATA-AAAataatataatgggtatcagacgcaaa
gi|17 : acA---TA-TTA---ACTGGCAAGAATGGAA-AA-A-G--CCAGCATTCGTG---AC--TC-TCGTCAG-----A-ATCAAA--GT--ATCTGACGTCAC--A-TTA-AAAAAGAAAAGCACGGT
gi|19 : --ATCTGACGTCAC-AA-A-G-AAAAGGGCAGG-ACGATCCCATGCATGTG-GCC-GT-GAAAAT-----A--TT-G-
gi|2 : tgttAAG-ACCATTGAAGATCA-TTG---ACAGTCAAGATTGAAA-AC-A-T--GTAGC-------------------ATATGTT-GCA-G--ACA--GCCTATTTTACGTCAA-AATGTG-AAGAGGGCAGATATGAATTAGTGCAGACA-A-T-GT-AAAGAC-----AACGC-G-A-TTG-ATAAT-TGAAGC---C-TTT-G---AAGTC--AATTTC---A--ATCAA--TTGTTA-ATCAC--ACGTATTAgact
gi|3 : ttaATTACTAAG-ACCACAGAA---TA-TTA---ATTGGCAGGACTGGAG-AT-A-C--ACAGTATTTGCG---AC--TG-TCATCTGTTGA-A-GTCAAA--AC--ATTTGATGTCAC-AA-ATGTAAAAGGGCAGGTATGATTCAACACTGATG-A-C--T-GAGAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----TGTTT-G---ATGTC--AGTTTT---G--ATCCACTTTA-TG-ATCAC--ATATATCAT-TCATGGACTGTTTAGCAGATAGACATCACATTATCAGGTCGTAGTAGTTATCACCCaaccacaataactgatatcaggggaagatgagtgatatcttaaaaataaattgattgtcataaaaatacttgaagtataattaaacgtacacctgaatagacttaacccttgtaaaaatgatagcatgttacttagccaaagatcaaaaaagtttcccaaaggtttttgaaaagatcactatcaaataattctggcatgttagaattcatt
gi|4 : CAGCACAGATG-C-CTGT-GAAAAC-----A--TG-GGA-TTG-A-AAG-TGTAG----T-TTT-C---AAGTA--AATCTC---ACTATACACTTTaatggtacatgtaccttcatgtgaccagctctagaccaatgaaattgactattattctttttagataatggtgaccattatttgttattttttttatacaaattaaagatatattgtgtgtagttatt
gi|5 : tcaaaattaattttactgaatgtcgcaaaagtggagtttgaa---ATTGGCAAGATCGAAA-AC-A-T--ACATTGTTCGTG---AC---------------A-C-ATCAAA---C--ATTTGAATACAC-AA-ATG-AAAAGTGCGGGTACGATTCATCAAGGACG-T-CAGT-GAAAAC-----A--TT-G-A-C------AT-T--------T-TTT-----AAGTC--AATTTC---A--AATCACTTTG-CA-ATTGC--A-ATATAAT-taagtatcaggacaaatagtgtggttatcaatttaattatcatgcgtaaaaatgtagcatcttctaaaaattgataagcattaaatacttgtaataggattcaagatatcatgtcacttcataaaaatgaaaaaaaggtctaaatctacatgtaccacaggattttgagagatcactatcaaatgatattatttgtgcaaaaacatttcgtaaataatttgcaatgacaccaattcatgtctgttgtttttt
gi|6 : GGCAAGACTGGAATATGA-T--ACAGCGTTGGAG---TC--TG-TCGTCTGTT-ACA-GTCGAA--GC--AATTGA--------------AAAACGTAAGGTAAGATTCGAAGTGAACG-A-C-CTTGAACGA-----A--TT-GCA-TTG-A-AAT-TGTAT----T-TTT-G---AAGTC--AATTTC---A--TTCCACTTTG-CT-ATTAC--GTGTATAAT-ggatatcaggcgcaaatatgttatatctcctgaaatgcattgacgatcatttattacttgtagtcaattttaagacatatatttgaataccacacctctcgtaaagaattattgtatgccacctcgcaaatctacccggcgtttttgaagagatcattcttaaatattttttgcgcgtgaactttaaataaataatttgcaatga
gi|7 : ATTACG-AAAGTGCAA---CA-TTG---ACTGAAAAAATTGGAA-AT-A-T--ATAGCGTTCGTG---AC--TG-TCATCTGTT---A-GTCAAA--GC--ACTTGACGTCAC-AC-ATG-AAAAGGGTA--T--------GCACGGATG-ACC-AT-GACAAC-----A--CT-G-C-TT------T-TG--G----T-----------GTG--AATCTC---A--ATCCACTTTG-TATATTGT--ATGTATTA--TAACAAA---TATAGCAGAAAGG----ACATAATCAAGT-GTAGCAG----CACCCatccaatataatgggtatcaggcgcgaacgtgtcgcggctatcttgtaaacttgatgcattaatgatcattatatgtgaataatcataaccattgtaaacaagtatgattatttgtcactttacaaagatcaaaagaatctaccataggtttttgaagaggtcatt
gi|8 : atgaaaacccaaagaaaattggtggaaatggggaatttcaatacatatatagatccagtcgtttttaaatctattgtttttagtaaaatgcagaaATTACG-ATCATGGAA---TA-TTA---ATTAGCAAGATTGGAA-AT-G-T--AAAGCGTTCGTG---AT--TG-TCATCTGTT-A-----------------TTGACATCAC-CA-ACG-AAAAGTACAGGTATGATTCAGCATGGACG-ACC-GT-GAAAAC-----A--TTGG-A-TTGAA-AAC-TGAAAT---T-TTT-T---AAGTC--AAATCC---A--ATAAACTTTC-CA-TTTAC--A-----AAT-T---GTACTGTATAACAGGA
gi|9 : atgaaaaataaaagaacaaatgatcacataacaatacatattgatattaattttttatgttacggtgcactgcagcTATTGAG-ACCGTGGAA---CA-TTA---AATGACAAGATTGGAA-AT-AGT--GAAGAATTGGTG---AT--TG-CCATTTATT-AGA-GTTAAA---C--ATTCTCCGTCAC--A-ATG-AAAAGCGTAGGTATGATTTAGCAAGGACA-ACC-GT-GAAAAC-----A-----G-G-CTT-A-AATATGTGG----A-TTT-GTTTAA-----AATTT-------ATGTA-TTAA-CG-ATTACTGATTTACTAA-TAGTAAATTGTAttttttttccgatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAGCATGTTACTTAGCCAAAGATCAGAAAAAGTTTCCCAAAGGTTTTGAAAAGATCACTATCAAATAATTTCTGCATGTTAGAATTCA
Unaligned ( gi|20 ): AATATTATCATTATATAAATTATAAACAGTGTGTTATT
Alignments
lowQualScore : 1111 2222222222 111111 11111 111111 11111 2222222222 2222 1 2222
lowQualScore : 4 1 777 4 666 0 2 33 2222 22 1 555 33 55 5555555555 333333 88 2 2 11 1 2 66666 22222 7 5 44 2 8 33 333333 66666 0 555 7777777 0 7 3 3 99 0 1 5555555555 3 5 0 3 3333 1 5 4444
lowQualScore : . . ... . ... . . .. .... .. . ... .. .. .......... ...... .. . . .. . . ..... ..... . . .. . . .. ...... ..... . ... ....... . . . . .. . . .......... . . . . .... . . ....
lowQualScore : 4 7 000 0 444 4 9 11 6666 99 2 000 99 99 1111111111 666666 88 5 5 99 1 7 22222 55555 5 3 22 7 0 33 555555 99999 8 888 6666666 2 3 3 3 22 4 0 1111111111 6 4 1 2 5555 0 0 5555
consensus : ATTATTAAG-ACCGCGGAA---CA-TTA---ACTGGCAAGATTGGAA-AT-A-T--ACAGCGTTCGTG---AC--TG-TCATCTGTT-A-A-GTCAAA--GC--ATTTGACGTCAC-AA-ATG-AAAAGGGCAGGTACGATTCAGCGCGGACGACCGT-GAAAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----T-TTT-G---AAGTC--AATTTC---A--ATCCACTTTG-CA-ATTAC--ATGTATNA----T---TAATAAACTGTATANCAGAAAGGCATCACATNATCAGGTCGTAGCAGTTATCACCC
Reference ( family-1620 ) : ATTATTAAG-ACCGCGGAA---CA-TTA---ACTGGCAAGATTGGAA-AT-A-T--ACAGCGTTCGTG---AC--TG-TCATCTGTT-A-A-GTCAAA--GC--ATTTGACGTCAC-AA-ATG-AAAAGGGCAGGTACGATTCAGCGCGGACGACCGT-GAAAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----T-TTT-G---AAGTC--AATTTC---A--ATCCACTTTG-CA-ATTAC--ATGTATNA----T---TAATAAACTGTATAGCAGAAAGGCATCACATNATCAGGTCGTAGCAGTTATCACCC
gi|1 : CAAGATTGAAG-AT-A-TTAACAGCGTTCATGGTAAT--CGATCGTCTGTT-GCA-GTCAAA--G---ATCTGACGTCACTAA-ATG-AAAAGGG-AGGTATGATTCAGTGCAGACGACCGTCAAAAACAGTGTA--CT-G-A--TG-A-AACATGTAA----A-ATT-G---AAAGCAAAAGTAC---A--ATCCA-TTTG-CA-ATTAC--TTGTACCA----T---
gi|10 : aaATTGAG-ACCGTGGAA---CA-TTA---AATGACAAGATTGGAA-AT-AGT--GAAGAATTGGTG---AT--TG-CCATTTATT-AGA-GTTAAA---C--ATTCTCCGTCAC--A-ATG-AAAAGCGTAGGTATGATTTAGCAAGGACAACCGT-GAAAAC-----A-----G-G-CTT-A-AATATGTGG----A-TTT-GTTTAA-----AATTT-------ATGTA-TTAA-CG-ATTACTGATTTACTA----A---TAGTAAATTGTAgaccaatatgatggttatcaagcgcaagtagacacgaatatcttctgaaatgcattgatacttgtcgtagatttcaagatatattttgaaattatcataaccttcataaagaatcattgtgtgtcgcttcatcctaatataacatctaccagagggtgttttgtgcgttaatttttcatagataaatttgcaatgacacgataactttttgttgtttttt
gi|11 : AAAAC-----A--TG-GGA-TCA-A-AGT-TAGGG----TGTTT-G---AAGTC--AATTTC---A--ATCCAATTTG-CA-ATTAC--ATGCAagacaatgacgtgttgtcctat
gi|12 : acgatttAGATTAGAA-AT-A-TGTACAGAGCTTGTG---AC--TG-TCAT-----------TCA-----C---TGTGACATCAC-AA-TTG-AAAAGGTCAGGAACGATTCAGCGCGGACGACAGT-GCAAAC-----A--TTGG-A-TCA-A-AAT-TGTAGCTTCT-TTT--------------TTTTTAAA--ACTCACTATG-CA-ATTAC--ATgtgggtattggtatcaggtacaaacatgtgatatcttctgaaatgcatggatgatcattgaatacctgcagtaattcttaagacaaatattcatatttgcttatttgtgtgcact
gi|13 : AAT-ACTGCAAAA---CA-TGA---ACTACCAAAATT--AA-AG-A-T--CCTGCGT--------AT--TG-CCAA--GTT-A-ACGTAAAA--AC--GTATGACGTCAC-AA-ATG-CAAAGG-TATGTACGATTCAGTACAGACGACCGT-AAAATT-----AT-TT-G-A-CTA-A-AAT-TGAAG----T-TTT-caatcgtaaccaatatattgggt
gi|14 : aatcaagttcaTTAAG-ACCAAAGAA---TACTTAGAGACGTACACGATTGGAA---------------TTCATG---AC--TA-ACA-----------ATCAAACGAC--ATT--ACGTCAC-AA-ATG-AAAAGGACAGACACGATTCAACGCGGACGAACAT-GAAAAC-----A--TG-G-ACTTG-A-AAT-TGTTG----T-TTT-cga
gi|15 : agtaccatAC-AA-ATG-AAA--GACAGACACGATTCAACGCGGACGAACAT-GAAAAT-----A--TA-G-ACTTG-A-AAT-TGTTG----T-TTTTG---AAGTG--AATCTC---T--ATCCACTTTG-CA-ATTTC--ATGTATCA----T-----ATAAATAATATAtga
gi|16 : TTAAACACCGCAGAA---TA-TTA---ATTGGCAATATTGGGG-AA-A----ACA---TTC-TG---ACATTG--CTTTTGTT-ATA-GTCAA---TC--ACTTGATGTCAC--A-ATA-AAAatgggtatcagacgcaaa
gi|17 : acA---TA-TTA---ACTGGCAAGAATGGAA-AA-A-G--CCAGCATTCGTG---AC--TC-TCGTCAG-----A-ATCAAA--GT--ATCTGACGTCAC--A-TTA-AAAAAGAAAAGCACGGT
gi|19 : --ATCTGACGTCAC-AA-A-G-AAAAGGGCAGG-ACGATCCCATGCATGTGGCCGT-GAAAAT-----A--TT-G-
gi|2 : tgttAAG-ACCATTGAAGATCA-TTG---ACAGTCAAGATTGAAA-AC-A-T--GTAGC-------------------ATATGTT-GCA-G--ACA--GCCTATTTTACGTCAA-AATGTG-AAGAGGGCAGATATGAATTAGTGCAGACAAT-GT-AAAGAC-----AACGC-G-A-TTG-ATAAT-TGAAG----CCTTT-G---AAGTC--AATTTC---A--ATCAA--TTGTTA-ATCAC--ACGTATTAAACCA---CAAT-AACTG-ATATCAGgact
gi|3 : ttaATTACTAAG-ACCACAGAA---TA-TTA---ATTGGCAGGACTGGAG-AT-A-C--ACAGTATTTGCG---AC--TG-TCATCTGTTGA-A-GTCAAA--AC--ATTTGATGTCAC-AA-ATGTAAAAGGGCAGGTATGATTCAACACTGATGAC--T-GAGAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----TGTTT-G---ATGTC--AGTTTT---G--ATCCACTTTA-TG-ATCAC--ATATATCA----T---TCATGGACTGTTTAGCAGATAGACATCACATTATCAGGTCGTAGTAGTTATCACCCgggaagatgagtgatatcttaaaaataaattgattgtcataaaaatacttgaagtataattaaacgtacacctgaatagacttaacccttgtaaaaatgatagcatgttacttagccaaagatcaaaaaagtttcccaaaggtttttgaaaagatcactatcaaataattctggcatgttagaattcatt
gi|4 : CAGCACAGATGCCTGT-GAAAAC-----A--TG-GGA-TTG-A-AAG-TGTAG----T-TTT-C---AAGTA--AATCTC---ACTATACACTTTaatggtacatgtaccttcatgtgaccagctctagaccaatgaaattgactattattctttttagataatggtgaccattatttgttattttttttatacaaattaaagatatattgtgtgtagttatt
gi|5 : tcaaaattaattttactgaatgtcgcaaaagtggagtttgaa---ATTGGCAAGATCGAAA-AC-A-T--ACATTGTTCGTG---AC---------------A-C-ATCAAA---C--ATTTGAATACAC-AA-ATG-AAAAGTGCGGGTACGATTCATCAAGGACGTCAGT-GAAAAC-----A--TT-G-A-C------AT-T--------T-TTT-----AAGTC--AATTTC---A--AATCACTTTG-CA-ATTGC--A-ATATAA----T---GGATAtaagtatcaggacaaatagtgtggttatcaatttaattatcatgcgtaaaaatgtagcatcttctaaaaattgataagcattaaatacttgtaataggattcaagatatcatgtcacttcataaaaatgaaaaaaaggtctaaatctacatgtaccacaggattttgagagatcactatcaaatgatattatttgtgcaaaaacatttcgtaaataatttgcaatgacaccaattcatgtctgttgtttttt
gi|6 : GGCAAGACTGGAATATGA-T--ACAGCGTTGGAG---TC--TG-TCGTCTGTT-ACA-GTCGAA--GC--AATTGA--------------AAAACGTAAGGTAAGATTCGAAGTGAACGACCTT-GAACGA-----A--TT-GCA-TTG-A-AAT-TGTAT----T-TTT-G---AAGTC--AATTTC---A--TTCCACTTTG-CT-ATTAC--GTGTATAA----TATCCAATATAATGGGTATCAGtcaggcgcaaatatgttatatctcctgaaatgcattgacgatcatttattacttgtagtcaattttaagacatatatttgaataccacacctctcgtaaagaattattgtatgccacctcgcaaatctacccggcgtttttgaagagatcattcttaaatattttttgcgcgtgaactttaaataaataatttgcaatga
gi|7 : ATTACG-AAAGTGCAA---CA-TTG---ACTGAAAAAATTGGAA-AT-A-T--ATAGCGTTCGTG---AC--TG-TCATCTGTT---A-GTCAAA--GC--ACTTGACGTCAC-AC-ATG-AAAAGGGTA--T--------GCACGGATGACCAT-GACAAC-----A--CT-G-C-TT------T-TG--G----T-----------GTG--AATCTC---A--ATCCACTTTG-TATATTGT--ATGTATTA--------TAACAAA---TATAGCAGAAAGG----ACATAATCAAGT-GTAGCAG----CACCCgcgcgaacgtgtcgcggctatcttgtaaacttgatgcattaatgatcattatatgtgaataatcataaccattgtaaacaagtatgattatttgtcactttacaaagatcaaaagaatctaccataggtttttgaagaggtcatt
gi|8 : atgaaaacccaaagaaaattggtggaaatggggaatttcaatacatatatagatccagtcgtttttaaatctattgtttttagtaaaatgcagaaATTACG-ATCATGGAA---TA-TTA---ATTAGCAAGATTGGAA-AT-G-T--AAAGCGTTCGTG---AT--TG-TCATCTGTT-A-----------------TTGACATCAC-CA-ACG-AAAAGTACAGGTATGATTCAGCATGGACGACCGT-GAAAAC-----A--TTGG-A-TTGAA-AAC-TGAAAT---T-TTT-T---AAGTC--AAATCC---A--ATAAACTTTC-CA-TTTAC--A-----AA----T---T-GT--ACTGTATAACAGGA
gi|9 : atgaaaaataaaagaacaaatgatcacataacaatacatattgatattaattttttatgttacggtgcactgcagcTATTGAG-ACCGTGGAA---CA-TTA---AATGACAAGATTGGAA-AT-AGT--GAAGAATTGGTG---AT--TG-CCATTTATT-AGA-GTTAAA---C--ATTCTCCGTCAC--A-ATG-AAAAGCGTAGGTATGATTTAGCAAGGACAACCGT-GAAAAC-----A-----G-G-CTT-A-AATATGTGG----A-TTT-GTTTAA-----AATTT-------ATGTA-TTAA-CG-ATTACTGATTTACTA----A---TAGTAAATTGTAttttttttccgatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAGCATGTTACTTAGCCAAAGATCAGAAAAAGTTTCCCAAAGGTTTTGAAAAGATCACTATCAAATAATTTCTGCATGTTAGAATTCA
Unaligned ( gi|20 ): AATATTATCATTATATAAATTATAAACAGTGTGTTATT
Alignments
lowQualScore : 1111 2222222222 111111 11111 111111 11111 2222222222 2222 1 2222
lowQualScore : 4 1 777 4 666 0 2 33 2222 22 1 555 33 55 5555555555 333333 88 2 2 11 1 2 66666 22222 7 5 44 2 8 33 333333 66666 0 555 7777777 0 7 3 3 99 0 1 9999999999 0 55 6 3 1 3333 1 5 4444
lowQualScore : . . ... . ... . . .. .... .. . ... .. .. .......... ...... .. . . .. . . ..... ..... . . .. . . .. ...... ..... . ... ....... . . . . .. . . .......... . .. . . . .... . . ....
lowQualScore : 4 7 000 0 444 4 9 11 6666 99 2 000 99 99 1111111111 666666 88 5 5 99 1 7 22222 55555 5 3 22 7 0 33 555555 99999 8 888 6666666 2 3 3 3 22 4 0 2222222222 8 99 5 1 0 5555 0 0 5555
consensus : ATTATTAAG-ACCGCGGAA---CA-TTA---ACTGGCAAGATTGGAA-AT-A-T--ACAGCGTTCGTG---AC--TG-TCATCTGTT-A-A-GTCAAA--GC--ATTTGACGTCAC-AA-ATG-AAAAGGGCAGGTACGATTCAGCGCGGACGACCGT-GAAAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----T-TTT-G---AAGTC--AATTTC---A--ATCCACTTTG-CA-ATTAC--ATGTATNA----T-----TAATAAACTGTATANCAGAAAGGCATCACATNATCAGGTCGTAGCAGTTATCACCC
Reference ( family-1620 ) : ATTATTAAG-ACCGCGGAA---CA-TTA---ACTGGCAAGATTGGAA-AT-A-T--ACAGCGTTCGTG---AC--TG-TCATCTGTT-A-A-GTCAAA--GC--ATTTGACGTCAC-AA-ATG-AAAAGGGCAGGTACGATTCAGCGCGGACGACCGT-GAAAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----T-TTT-G---AAGTC--AATTTC---A--ATCCACTTTG-CA-ATTAC--ATGTATNA----T-----TAATAAACTGTATANCAGAAAGGCATCACATNATCAGGTCGTAGCAGTTATCACCC
gi|1 : CAAGATTGAAG-AT-A-TTAACAGCGTTCATGGTAAT--CGATCGTCTGTT-GCA-GTCAAA--G---ATCTGACGTCACTAA-ATG-AAAAGGG-AGGTATGATTCAGTGCAGACGACCGTCAAAAACAGTGTA--CT-G-A--TG-A-AACATGTAA----A-ATT-G---AAAGCAAAAGTAC---A--ATCCA-TTTG-CA-ATTAC--TTGTACCA----T-----
gi|10 : aaATTGAG-ACCGTGGAA---CA-TTA---AATGACAAGATTGGAA-AT-AGT--GAAGAATTGGTG---AT--TG-CCATTTATT-AGA-GTTAAA---C--ATTCTCCGTCAC--A-ATG-AAAAGCGTAGGTATGATTTAGCAAGGACAACCGT-GAAAAC-----A-----G-G-CTT-A-AATATGTGG----A-TTT-GTTTAA-----AATTT-------ATGTA-TTAA-CG-ATTACTGATTTACTA----A-----TAGTAAATTGTAgaccaatatgatggttatcaagcgcaagtagacacgaatatcttctgaaatgcattgatacttgtcgtagatttcaagatatattttgaaattatcataaccttcataaagaatcattgtgtgtcgcttcatcctaatataacatctaccagagggtgttttgtgcgttaatttttcatagataaatttgcaatgacacgataactttttgttgtttttt
gi|11 : AAAAC-----A--TG-GGA-TCA-A-AGT-TAGGG----TGTTT-G---AAGTC--AATTTC---A--ATCCAATTTG-CA-ATTAC--ATGCAagacaatgacgtgttgtcctat
gi|12 : acgatttAGATTAGAA-AT-A-TGTACAGAGCTTGTG---AC--TG-TCAT-----------TCA-----C---TGTGACATCAC-AA-TTG-AAAAGGTCAGGAACGATTCAGCGCGGACGACAGT-GCAAAC-----A--TTGG-A-TCA-A-AAT-TGTAGCTTCT-TTT--------------TTTTTAAA--ACTCACTATG-CA-ATTAC--ATgtgggtattggtatcaggtacaaacatgtgatatcttctgaaatgcatggatgatcattgaatacctgcagtaattcttaagacaaatattcatatttgcttatttgtgtgcact
gi|13 : AAT-ACTGCAAAA---CA-TGA---ACTACCAAAATT--AA-AG-A-T--CCTGCGT--------AT--TG-CCAA--GTT-A-ACGTAAAA--AC--GTATGACGTCAC-AA-ATG-CAAAGG-TATGTACGATTCAGTACAGACGACCGT-AAAATT-----AT-TT-G-A-CTA-A-AAT-TGAAG----T-TTT-caatcgtaaccaatatattgggt
gi|14 : aatcaagttcaTTAAG-ACCAAAGAA---TACTTAGAGACGTACACGATTGGAA---------------TTCATG---AC--TA-ACA-----------ATCAAACGAC--ATT--ACGTCAC-AA-ATG-AAAAGGACAGACACGATTCAACGCGGACGAACAT-GAAAAC-----A--TG-G-ACTTG-A-AAT-TGTTG----T-TTT-cga
gi|15 : agtaccatAC-AA-ATG-AAA--GACAGACACGATTCAACGCGGACGAACAT-GAAAAT-----A--TA-G-ACTTG-A-AAT-TGTTG----T-TTTTG---AAGTG--AATCTC---T--ATCCACTTTG-CA-ATTTC--ATGTATCA----TATAAATAATATAATGGGTATCAGAtga
gi|16 : TTAAACACCGCAGAA---TA-TTA---ATTGGCAATATTGGGG-AA-A----ACA---TTC-TG---ACATTG--CTTTTGTT-ATA-GTCAA---TC--ACTTGATGTCAC--A-ATA-AAAcgcaaa
gi|17 : acA---TA-TTA---ACTGGCAAGAATGGAA-AA-A-G--CCAGCATTCGTG---AC--TC-TCGTCAG-----A-ATCAAA--GT--ATCTGACGTCAC--A-TTA-AAAAAGAAAAGCACGGT
gi|19 : --ATCTGACGTCAC-AA-A-G-AAAAGGGCAGG-ACGATCCCATGCATGTGGCCGT-GAAAAT-----A--TT-G-
gi|2 : tgttAAG-ACCATTGAAGATCA-TTG---ACAGTCAAGATTGAAA-AC-A-T--GTAGC-------------------ATATGTT-GCA-G--ACA--GCCTATTTTACGTCAA-AATGTG-AAGAGGGCAGATATGAATTAGTGCAGACAAT-GT-AAAGAC-----AACGC-G-A-TTG-ATAAT-TGAAG----CCTTT-G---AAGTC--AATTTC---A--ATCAA--TTGTTA-ATCAC--ACGTATTAAACCA-----CAAT-AACTG-ATATCAGgact
gi|3 : ttaATTACTAAG-ACCACAGAA---TA-TTA---ATTGGCAGGACTGGAG-AT-A-C--ACAGTATTTGCG---AC--TG-TCATCTGTTGA-A-GTCAAA--AC--ATTTGATGTCAC-AA-ATGTAAAAGGGCAGGTATGATTCAACACTGATGAC--T-GAGAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----TGTTT-G---ATGTC--AGTTTT---G--ATCCACTTTA-TG-ATCAC--ATATATCA----T-----TCATGGACTGTTTAGCAGATAGACATCACATTATCAGGTCGTAGTAGTTATCACCCgggaagatgagtgatatcttaaaaataaattgattgtcataaaaatacttgaagtataattaaacgtacacctgaatagacttaacccttgtaaaaatgatagcatgttacttagccaaagatcaaaaaagtttcccaaaggtttttgaaaagatcactatcaaataattctggcatgttagaattcatt
gi|4 : CAGCACAGATGCCTGT-GAAAAC-----A--TG-GGA-TTG-A-AAG-TGTAG----T-TTT-C---AAGTA--AATCTC---ACTATACACTTTaatggtacatgtaccttcatgtgaccagctctagaccaatgaaattgactattattctttttagataatggtgaccattatttgttattttttttatacaaattaaagatatattgtgtgtagttatt
gi|5 : tcaaaattaattttactgaatgtcgcaaaagtggagtttgaa---ATTGGCAAGATCGAAA-AC-A-T--ACATTGTTCGTG---AC---------------A-C-ATCAAA---C--ATTTGAATACAC-AA-ATG-AAAAGTGCGGGTACGATTCATCAAGGACGTCAGT-GAAAAC-----A--TT-G-A-C------AT-T--------T-TTT-----AAGTC--AATTTC---A--AATCACTTTG-CA-ATTGC--A-ATATAA----T-----GGATAtaagtatcaggacaaatagtgtggttatcaatttaattatcatgcgtaaaaatgtagcatcttctaaaaattgataagcattaaatacttgtaataggattcaagatatcatgtcacttcataaaaatgaaaaaaaggtctaaatctacatgtaccacaggattttgagagatcactatcaaatgatattatttgtgcaaaaacatttcgtaaataatttgcaatgacaccaattcatgtctgttgtttttt
gi|6 : GGCAAGACTGGAATATGA-T--ACAGCGTTGGAG---TC--TG-TCGTCTGTT-ACA-GTCGAA--GC--AATTGA--------------AAAACGTAAGGTAAGATTCGAAGTGAACGACCTT-GAACGA-----A--TT-GCA-TTG-A-AAT-TGTAT----T-TTT-G---AAGTC--AATTTC---A--TTCCACTTTG-CT-ATTAC--GTGTATAA----TATC--CAATATAATGGGTATCAGtcaggcgcaaatatgttatatctcctgaaatgcattgacgatcatttattacttgtagtcaattttaagacatatatttgaataccacacctctcgtaaagaattattgtatgccacctcgcaaatctacccggcgtttttgaagagatcattcttaaatattttttgcgcgtgaactttaaataaataatttgcaatga
gi|7 : ATTACG-AAAGTGCAA---CA-TTG---ACTGAAAAAATTGGAA-AT-A-T--ATAGCGTTCGTG---AC--TG-TCATCTGTT---A-GTCAAA--GC--ACTTGACGTCAC-AC-ATG-AAAAGGGTA--T--------GCACGGATGACCAT-GACAAC-----A--CT-G-C-TT------T-TG--G----T-----------GTG--AATCTC---A--ATCCACTTTG-TATATTGT--ATGTATTA----------TAACAAA---TATAGCAGAAAGG----ACATAATCAAGT-GTAGCAG----CACCCgcgcgaacgtgtcgcggctatcttgtaaacttgatgcattaatgatcattatatgtgaataatcataaccattgtaaacaagtatgattatttgtcactttacaaagatcaaaagaatctaccataggtttttgaagaggtcatt
gi|8 : atgaaaacccaaagaaaattggtggaaatggggaatttcaatacatatatagatccagtcgtttttaaatctattgtttttagtaaaatgcagaaATTACG-ATCATGGAA---TA-TTA---ATTAGCAAGATTGGAA-AT-G-T--AAAGCGTTCGTG---AT--TG-TCATCTGTT-A-----------------TTGACATCAC-CA-ACG-AAAAGTACAGGTATGATTCAGCATGGACGACCGT-GAAAAC-----A--TTGG-A-TTGAA-AAC-TGAAAT---T-TTT-T---AAGTC--AAATCC---A--ATAAACTTTC-CA-TTTAC--A-----AA----T-----T-GT--ACTGTATAACAGGA
gi|9 : atgaaaaataaaagaacaaatgatcacataacaatacatattgatattaattttttatgttacggtgcactgcagcTATTGAG-ACCGTGGAA---CA-TTA---AATGACAAGATTGGAA-AT-AGT--GAAGAATTGGTG---AT--TG-CCATTTATT-AGA-GTTAAA---C--ATTCTCCGTCAC--A-ATG-AAAAGCGTAGGTATGATTTAGCAAGGACAACCGT-GAAAAC-----A-----G-G-CTT-A-AATATGTGG----A-TTT-GTTTAA-----AATTT-------ATGTA-TTAA-CG-ATTACTGATTTACTA----A-----TAGTAAATTGTAttttttttccgatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAGCATGTTACTTAGCCAAAGATCAGAAAAAGTTTCCCAAAGGTTTTGAAAAGATCACTATCAAATAATTTCTGCATGTTAGAATTCA
Unaligned ( gi|20 ): AATATTATCATTATATAAATTATAAACAGTGTGTTATT
Alignments
lowQualScore : 1111 2222222222 111111 11111 111111 11111 2222222222 2222 1 2222
lowQualScore : 4 1 777 4 666 0 2 33 2222 22 1 555 33 55 5555555555 333333 88 2 2 11 1 2 66666 22222 7 5 44 2 8 33 333333 66666 0 555 7777777 0 7 3 3 99 0 1 9999999999 0 55 6 3 1 3333 1 5 4444
lowQualScore : . . ... . ... . . .. .... .. . ... .. .. .......... ...... .. . . .. . . ..... ..... . . .. . . .. ...... ..... . ... ....... . . . . .. . . .......... . .. . . . .... . . ....
lowQualScore : 4 7 000 0 444 4 9 11 6666 99 2 000 99 99 1111111111 666666 88 5 5 99 1 7 22222 55555 5 3 22 7 0 33 555555 99999 8 888 6666666 2 3 3 3 22 4 0 2222222222 8 99 5 1 0 5555 0 0 5555
consensus : ATTATTAAG-ACCGCGGAA---CA-TTA---ACTGGCAAGATTGGAA-AT-A-T--ACAGCGTTCGTG---AC--TG-TCATCTGTT-A-A-GTCAAA--GC--ATTTGACGTCAC-AA-ATG-AAAAGGGCAGGTACGATTCAGCGCGGACGACCGT-GAAAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----T-TTT-G---AAGTC--AATTTC---A--ATCCACTTTG-CA-ATTAC--ATGTATNA----T-----TAATAAACTGTATANCAGAAAGGCATCACATNATCAGGTCGTAGCAGTTATCACCC
Reference ( family-1620 ) : ATTATTAAG-ACCGCGGAA---CA-TTA---ACTGGCAAGATTGGAA-AT-A-T--ACAGCGTTCGTG---AC--TG-TCATCTGTT-A-A-GTCAAA--GC--ATTTGACGTCAC-AA-ATG-AAAAGGGCAGGTACGATTCAGCGCGGACGACCGT-GAAAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----T-TTT-G---AAGTC--AATTTC---A--ATCCACTTTG-CA-ATTAC--ATGTATNA----T-----TAATAAACTGTATANCAGAAAGGCATCACATNATCAGGTCGTAGCAGTTATCACCC
gi|1 : CAAGATTGAAG-AT-A-TTAACAGCGTTCATGGTAAT--CGATCGTCTGTT-GCA-GTCAAA--G---ATCTGACGTCACTAA-ATG-AAAAGGG-AGGTATGATTCAGTGCAGACGACCGTCAAAAACAGTGTA--CT-G-A--TG-A-AACATGTAA----A-ATT-G---AAAGCAAAAGTAC---A--ATCCA-TTTG-CA-ATTAC--TTGTACCA----T-----
gi|10 : aaATTGAG-ACCGTGGAA---CA-TTA---AATGACAAGATTGGAA-AT-AGT--GAAGAATTGGTG---AT--TG-CCATTTATT-AGA-GTTAAA---C--ATTCTCCGTCAC--A-ATG-AAAAGCGTAGGTATGATTTAGCAAGGACAACCGT-GAAAAC-----A-----G-G-CTT-A-AATATGTGG----A-TTT-GTTTAA-----AATTT-------ATGTA-TTAA-CG-ATTACTGATTTACTA----A-----TAGTAAATTGTAgaccaatatgatggttatcaagcgcaagtagacacgaatatcttctgaaatgcattgatacttgtcgtagatttcaagatatattttgaaattatcataaccttcataaagaatcattgtgtgtcgcttcatcctaatataacatctaccagagggtgttttgtgcgttaatttttcatagataaatttgcaatgacacgataactttttgttgtttttt
gi|11 : AAAAC-----A--TG-GGA-TCA-A-AGT-TAGGG----TGTTT-G---AAGTC--AATTTC---A--ATCCAATTTG-CA-ATTAC--ATGCAagacaatgacgtgttgtcctat
gi|12 : acgatttAGATTAGAA-AT-A-TGTACAGAGCTTGTG---AC--TG-TCAT-----------TCA-----C---TGTGACATCAC-AA-TTG-AAAAGGTCAGGAACGATTCAGCGCGGACGACAGT-GCAAAC-----A--TTGG-A-TCA-A-AAT-TGTAGCTTCT-TTT--------------TTTTTAAA--ACTCACTATG-CA-ATTAC--ATgtgggtattggtatcaggtacaaacatgtgatatcttctgaaatgcatggatgatcattgaatacctgcagtaattcttaagacaaatattcatatttgcttatttgtgtgcact
gi|13 : AAT-ACTGCAAAA---CA-TGA---ACTACCAAAATT--AA-AG-A-T--CCTGCGT--------AT--TG-CCAA--GTT-A-ACGTAAAA--AC--GTATGACGTCAC-AA-ATG-CAAAGG-TATGTACGATTCAGTACAGACGACCGT-AAAATT-----AT-TT-G-A-CTA-A-AAT-TGAAG----T-TTT-caatcgtaaccaatatattgggt
gi|14 : aatcaagttcaTTAAG-ACCAAAGAA---TACTTAGAGACGTACACGATTGGAA---------------TTCATG---AC--TA-ACA-----------ATCAAACGAC--ATT--ACGTCAC-AA-ATG-AAAAGGACAGACACGATTCAACGCGGACGAACAT-GAAAAC-----A--TG-G-ACTTG-A-AAT-TGTTG----T-TTT-cga
gi|15 : agtaccatAC-AA-ATG-AAA--GACAGACACGATTCAACGCGGACGAACAT-GAAAAT-----A--TA-G-ACTTG-A-AAT-TGTTG----T-TTTTG---AAGTG--AATCTC---T--ATCCACTTTG-CA-ATTTC--ATGTATCA----TATAAATAATATAATGGGTATCAGAtga
gi|16 : TTAAACACCGCAGAA---TA-TTA---ATTGGCAATATTGGGG-AA-A----ACA---TTC-TG---ACATTG--CTTTTGTT-ATA-GTCAA---TC--ACTTGATGTCAC--A-ATA-AAAcgcaaa
gi|17 : acA---TA-TTA---ACTGGCAAGAATGGAA-AA-A-G--CCAGCATTCGTG---AC--TC-TCGTCAG-----A-ATCAAA--GT--ATCTGACGTCAC--A-TTA-AAAAAGAAAAGCACGGT
gi|19 : --ATCTGACGTCAC-AA-A-G-AAAAGGGCAGG-ACGATCCCATGCATGTGGCCGT-GAAAAT-----A--TT-G-
gi|2 : tgttAAG-ACCATTGAAGATCA-TTG---ACAGTCAAGATTGAAA-AC-A-T--GTAGC-------------------ATATGTT-GCA-G--ACA--GCCTATTTTACGTCAA-AATGTG-AAGAGGGCAGATATGAATTAGTGCAGACAAT-GT-AAAGAC-----AACGC-G-A-TTG-ATAAT-TGAAG----CCTTT-G---AAGTC--AATTTC---A--ATCAA--TTGTTA-ATCAC--ACGTATTAAACCA-----CAAT-AACTG-ATATCAGgact
gi|3 : ttaATTACTAAG-ACCACAGAA---TA-TTA---ATTGGCAGGACTGGAG-AT-A-C--ACAGTATTTGCG---AC--TG-TCATCTGTTGA-A-GTCAAA--AC--ATTTGATGTCAC-AA-ATGTAAAAGGGCAGGTATGATTCAACACTGATGAC--T-GAGAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----TGTTT-G---ATGTC--AGTTTT---G--ATCCACTTTA-TG-ATCAC--ATATATCA----T-----TCATGGACTGTTTAGCAGATAGACATCACATTATCAGGTCGTAGTAGTTATCACCCgggaagatgagtgatatcttaaaaataaattgattgtcataaaaatacttgaagtataattaaacgtacacctgaatagacttaacccttgtaaaaatgatagcatgttacttagccaaagatcaaaaaagtttcccaaaggtttttgaaaagatcactatcaaataattctggcatgttagaattcatt
gi|4 : CAGCACAGATGCCTGT-GAAAAC-----A--TG-GGA-TTG-A-AAG-TGTAG----T-TTT-C---AAGTA--AATCTC---ACTATACACTTTaatggtacatgtaccttcatgtgaccagctctagaccaatgaaattgactattattctttttagataatggtgaccattatttgttattttttttatacaaattaaagatatattgtgtgtagttatt
gi|5 : tcaaaattaattttactgaatgtcgcaaaagtggagtttgaa---ATTGGCAAGATCGAAA-AC-A-T--ACATTGTTCGTG---AC---------------A-C-ATCAAA---C--ATTTGAATACAC-AA-ATG-AAAAGTGCGGGTACGATTCATCAAGGACGTCAGT-GAAAAC-----A--TT-G-A-C------AT-T--------T-TTT-----AAGTC--AATTTC---A--AATCACTTTG-CA-ATTGC--A-ATATAA----T-----GGATAtaagtatcaggacaaatagtgtggttatcaatttaattatcatgcgtaaaaatgtagcatcttctaaaaattgataagcattaaatacttgtaataggattcaagatatcatgtcacttcataaaaatgaaaaaaaggtctaaatctacatgtaccacaggattttgagagatcactatcaaatgatattatttgtgcaaaaacatttcgtaaataatttgcaatgacaccaattcatgtctgttgtttttt
gi|6 : GGCAAGACTGGAATATGA-T--ACAGCGTTGGAG---TC--TG-TCGTCTGTT-ACA-GTCGAA--GC--AATTGA--------------AAAACGTAAGGTAAGATTCGAAGTGAACGACCTT-GAACGA-----A--TT-GCA-TTG-A-AAT-TGTAT----T-TTT-G---AAGTC--AATTTC---A--TTCCACTTTG-CT-ATTAC--GTGTATAA----TATC--CAATATAATGGGTATCAGtcaggcgcaaatatgttatatctcctgaaatgcattgacgatcatttattacttgtagtcaattttaagacatatatttgaataccacacctctcgtaaagaattattgtatgccacctcgcaaatctacccggcgtttttgaagagatcattcttaaatattttttgcgcgtgaactttaaataaataatttgcaatga
gi|7 : ATTACG-AAAGTGCAA---CA-TTG---ACTGAAAAAATTGGAA-AT-A-T--ATAGCGTTCGTG---AC--TG-TCATCTGTT---A-GTCAAA--GC--ACTTGACGTCAC-AC-ATG-AAAAGGGTA--T--------GCACGGATGACCAT-GACAAC-----A--CT-G-C-TT------T-TG--G----T-----------GTG--AATCTC---A--ATCCACTTTG-TATATTGT--ATGTATTA----------TAACAAA---TATAGCAGAAAGG----ACATAATCAAGT-GTAGCAG----CACCCgcgcgaacgtgtcgcggctatcttgtaaacttgatgcattaatgatcattatatgtgaataatcataaccattgtaaacaagtatgattatttgtcactttacaaagatcaaaagaatctaccataggtttttgaagaggtcatt
gi|8 : atgaaaacccaaagaaaattggtggaaatggggaatttcaatacatatatagatccagtcgtttttaaatctattgtttttagtaaaatgcagaaATTACG-ATCATGGAA---TA-TTA---ATTAGCAAGATTGGAA-AT-G-T--AAAGCGTTCGTG---AT--TG-TCATCTGTT-A-----------------TTGACATCAC-CA-ACG-AAAAGTACAGGTATGATTCAGCATGGACGACCGT-GAAAAC-----A--TTGG-A-TTGAA-AAC-TGAAAT---T-TTT-T---AAGTC--AAATCC---A--ATAAACTTTC-CA-TTTAC--A-----AA----T-----T-GT--ACTGTATAACAGGA
gi|9 : atgaaaaataaaagaacaaatgatcacataacaatacatattgatattaattttttatgttacggtgcactgcagcTATTGAG-ACCGTGGAA---CA-TTA---AATGACAAGATTGGAA-AT-AGT--GAAGAATTGGTG---AT--TG-CCATTTATT-AGA-GTTAAA---C--ATTCTCCGTCAC--A-ATG-AAAAGCGTAGGTATGATTTAGCAAGGACAACCGT-GAAAAC-----A-----G-G-CTT-A-AATATGTGG----A-TTT-GTTTAA-----AATTT-------ATGTA-TTAA-CG-ATTACTGATTTACTA----A-----TAGTAAATTGTAttttttttccgatt
blockSeqs : C C GAT C GAG T TG TGT AA G . AT C TTATTAGA CGAC A T T GT C . . ACGC G C GA T A TG CTTCT GTTT C TTAAA A T T TG T TATAAA AT A G T . A . .
blockSeqs : . A . . . . T GT AG T . . T TTGTTATA GCCT A . . TC A . . TTG G C T . A GG TG GTTT G CACT C . . TG C AACCA GG C T G
blockSeqs : . C . . . . T GT CG C . . C ATGTTGCA AC A . . AC C . . TTT C . A . . TA CC TG C CA C . . . T TATC AT C G T
blockSeqs : . T . . . . G T CA C . . A CTGTTGAA TC A . . AC C . . TTG . . A . . AA TG G C CT C . . . C A AA A T G
blockSeqs : . C . . . . A G TA C . . T CTGTTACA GT A . . AA C . . TG . . A . . TT TT G A CA C . . . A T AA C T A
blockSeqs : . T . . . . A T TG T . . T TTATTAGA AC A . . GC C . . TG . . G . . TT A G C TG C . . . A T A T T
blockSeqs : . T . . . . C C CG C . . T GTTAAC GC A . . GC T . . TA . . G . . AA T C C CA C . . . T T . . .
blockSeqs : . T . . . . T T CG G . . T CTGTTA GC A . . GC A . . TT . . G . . TA T G G CA C . . . A A
blockSeqs : . . . . C T CG C . . T CTGTTA C A . . GC C . . TT . . G . . TA T T C CA C . . . T .
blockSeqs : . . T T AA C . . C CAGA C C . . TA C . . TG . . G . . TA T . . CA . . . .
blockSeqs : . T T C G . . . AC C . . . GT C . . TT . . G . . AA T . . . . . . .
blockSeqs : . T . . . . . . . C . . . AC C . . TT . . T . . TG T . . . .
blockSeqs : . . . . . . . . . . . . . GT . . . CT . . . . . . T
blockSeqs : . . . T . . . . . . . . . . A
blockSeqs : . . . . . .
blockSeqCons : T*** *** T* GC**** A* GC ***** C**
originalCons : ATTATTAAG-ACCGCGGAA---CA-TTA---ACTGGCAAGATTGGAA-AT-A-T--ACAGCGTTCGTG---AC--TG-TCATCTGTT-A-A-GTCAAA--GC--ATTTGACGTCAC-AA-ATG-AAAAGGGCAGGTACGATTCAGCGCGGACGACCGT-GAAAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----T-TTT-G---AAGTC--AATTTC---A--ATCCACTTTG-CA-ATTAC--ATGTATNA----T-----TAATAAACTGTATANCAGAAAGGCATCACATNATCAGGTCGTAGCAGTTATCACCC
finalCons : ATTATTAAG-ACCGCGGAA---CA-TTA---ACTGGCAAGATTGGAA-AT-AT---ACAGCGTTCGTG---AC--TGT-CATCTGTT-A-A-GTCAAAGC----ATTTGACGTCACA-A-ATG-AAAAGGGCAGGTACGATTCAGCGCGGACGACCGT-GAAAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----T-TTT-G---AAGTC--AATTTC---A--ATCCACTTTG-CA-ATTAC--ATGTATNA----T-----TAATAAACTGTATANCAGAAAGGCATCACATNATCAGGTCGTAGCAGTTATCACCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAGCATGTTACTTAGCCAAAGATCAGAAAAAGTTTCCCAAAGGTTTTGAAAAGATCACTATCAAATAATTTCTGCATGTTAGAATTCA
Unaligned ( gi|20 ): AATATTATCATTATATAAATTATAAACAGTGTGTTATT
Alignments
lowQualScore : 1111 2222222222 111111 11111 111111 11111 2222222222 2222 1 2222
lowQualScore : 4 1 777 4 666 0 2 33 2222 22 1 555 33 55 5555555555 333333 88 2 2 11 1 2 66666 22222 7 5 44 2 8 33 333333 66666 0 555 7777777 0 7 3 3 99 0 1 9999999999 0 55 6 3 1 3333 1 5 4444
lowQualScore : . . ... . ... . . .. .... .. . ... .. .. .......... ...... .. . . .. . . ..... ..... . . .. . . .. ...... ..... . ... ....... . . . . .. . . .......... . .. . . . .... . . ....
lowQualScore : 4 7 000 0 444 4 9 11 6666 99 2 000 99 99 1111111111 666666 88 5 5 99 1 7 22222 55555 5 3 22 7 0 33 555555 99999 8 888 6666666 2 3 3 3 22 4 0 2222222222 8 99 5 1 0 5555 0 0 5555
consensus : ATTATTAAG-ACCGCGGAA---CA-TTA---ACTGGCAAGATTGGAA-AT-A-T--ACAGCGTTCGTG---AC--TG-TCATCTGTT-A-A-GTCAAA--GC--ATTTGACGTCAC-AA-ATG-AAAAGGGCAGGTACGATTCAGCGCGGACGACCGT-GAAAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----T-TTT-G---AAGTC--AATTTC---A--ATCCACTTTG-CA-ATTAC--ATGTATNA----T-----TAATAAACTGTATANCAGAAAGGCATCACATNATCAGGTCGTAGCAGTTATCACCC
Reference ( family-1620 ) : ATTATTAAG-ACCGCGGAA---CA-TTA---ACTGGCAAGATTGGAA-AT-A-T--ACAGCGTTCGTG---AC--TG-TCATCTGTT-A-A-GTCAAA--GC--ATTTGACGTCAC-AA-ATG-AAAAGGGCAGGTACGATTCAGCGCGGACGACCGT-GAAAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----T-TTT-G---AAGTC--AATTTC---A--ATCCACTTTG-CA-ATTAC--ATGTATNA----T-----TAATAAACTGTATANCAGAAAGGCATCACATNATCAGGTCGTAGCAGTTATCACCC
gi|1 : CAAGATTGAAG-AT-A-TTAACAGCGTTCATGGTAAT--CGATCGTCTGTT-GCA-GTCAAA--G---ATCTGACGTCACTAA-ATG-AAAAGGG-AGGTATGATTCAGTGCAGACGACCGTCAAAAACAGTGTA--CT-G-A--TG-A-AACATGTAA----A-ATT-G---AAAGCAAAAGTAC---A--ATCCA-TTTG-CA-ATTAC--TTGTACCA----T-----
gi|10 : aaATTGAG-ACCGTGGAA---CA-TTA---AATGACAAGATTGGAA-AT-AGT--GAAGAATTGGTG---AT--TG-CCATTTATT-AGA-GTTAAA---C--ATTCTCCGTCAC--A-ATG-AAAAGCGTAGGTATGATTTAGCAAGGACAACCGT-GAAAAC-----A-----G-G-CTT-A-AATATGTGG----A-TTT-GTTTAA-----AATTT-------ATGTA-TTAA-CG-ATTACTGATTTACTA----A-----TAGTAAATTGTAgaccaatatgatggttatcaagcgcaagtagacacgaatatcttctgaaatgcattgatacttgtcgtagatttcaagatatattttgaaattatcataaccttcataaagaatcattgtgtgtcgcttcatcctaatataacatctaccagagggtgttttgtgcgttaatttttcatagataaatttgcaatgacacgataactttttgttgtttttt
gi|11 : AAAAC-----A--TG-GGA-TCA-A-AGT-TAGGG----TGTTT-G---AAGTC--AATTTC---A--ATCCAATTTG-CA-ATTAC--ATGCAagacaatgacgtgttgtcctat
gi|12 : acgatttAGATTAGAA-AT-A-TGTACAGAGCTTGTG---AC--TG-TCAT-----------TCA-----C---TGTGACATCAC-AA-TTG-AAAAGGTCAGGAACGATTCAGCGCGGACGACAGT-GCAAAC-----A--TTGG-A-TCA-A-AAT-TGTAGCTTCT-TTT--------------TTTTTAAA--ACTCACTATG-CA-ATTAC--ATgtgggtattggtatcaggtacaaacatgtgatatcttctgaaatgcatggatgatcattgaatacctgcagtaattcttaagacaaatattcatatttgcttatttgtgtgcact
gi|13 : AAT-ACTGCAAAA---CA-TGA---ACTACCAAAATT--AA-AG-A-T--CCTGCGT--------AT--TG-CCAA--GTT-A-ACGTAAAA--AC--GTATGACGTCAC-AA-ATG-CAAAGG-TATGTACGATTCAGTACAGACGACCGT-AAAATT-----AT-TT-G-A-CTA-A-AAT-TGAAG----T-TTT-caatcgtaaccaatatattgggt
gi|14 : aatcaagttcaTTAAG-ACCAAAGAA---TACTTAGAGACGTACACGATTGGAA---------------TTCATG---AC--TA-ACA-----------ATCAAACGAC--ATT--ACGTCAC-AA-ATG-AAAAGGACAGACACGATTCAACGCGGACGAACAT-GAAAAC-----A--TG-G-ACTTG-A-AAT-TGTTG----T-TTT-cga
gi|15 : agtaccatAC-AA-ATG-AAA--GACAGACACGATTCAACGCGGACGAACAT-GAAAAT-----A--TA-G-ACTTG-A-AAT-TGTTG----T-TTTTG---AAGTG--AATCTC---T--ATCCACTTTG-CA-ATTTC--ATGTATCA----TATAAATAATATAATGGGTATCAGAtga
gi|16 : TTAAACACCGCAGAA---TA-TTA---ATTGGCAATATTGGGG-AA-A----ACA---TTC-TG---ACATTG--CTTTTGTT-ATA-GTCAA---TC--ACTTGATGTCAC--A-ATA-AAAcgcaaa
gi|17 : acA---TA-TTA---ACTGGCAAGAATGGAA-AA-A-G--CCAGCATTCGTG---AC--TC-TCGTCAG-----A-ATCAAA--GT--ATCTGACGTCAC--A-TTA-AAAAAGAAAAGCACGGT
gi|19 : --ATCTGACGTCAC-AA-A-G-AAAAGGGCAGG-ACGATCCCATGCATGTGGCCGT-GAAAAT-----A--TT-G-
gi|2 : tgttAAG-ACCATTGAAGATCA-TTG---ACAGTCAAGATTGAAA-AC-A-T--GTAGC-------------------ATATGTT-GCA-G--ACA--GCCTATTTTACGTCAA-AATGTG-AAGAGGGCAGATATGAATTAGTGCAGACAAT-GT-AAAGAC-----AACGC-G-A-TTG-ATAAT-TGAAG----CCTTT-G---AAGTC--AATTTC---A--ATCAA--TTGTTA-ATCAC--ACGTATTAAACCA-----CAAT-AACTG-ATATCAGgact
gi|3 : ttaATTACTAAG-ACCACAGAA---TA-TTA---ATTGGCAGGACTGGAG-AT-A-C--ACAGTATTTGCG---AC--TG-TCATCTGTTGA-A-GTCAAA--AC--ATTTGATGTCAC-AA-ATGTAAAAGGGCAGGTATGATTCAACACTGATGAC--T-GAGAAC-----A--TT-G-A-TTG-A-AAT-TGTAG----TGTTT-G---ATGTC--AGTTTT---G--ATCCACTTTA-TG-ATCAC--ATATATCA----T-----TCATGGACTGTTTAGCAGATAGACATCACATTATCAGGTCGTAGTAGTTATCACCCgggaagatgagtgatatcttaaaaataaattgattgtcataaaaatacttgaagtataattaaacgtacacctgaatagacttaacccttgtaaaaatgatagcatgttacttagccaaagatcaaaaaagtttcccaaaggtttttgaaaagatcactatcaaataattctggcatgttagaattcatt
gi|4 : CAGCACAGATGCCTGT-GAAAAC-----A--TG-GGA-TTG-A-AAG-TGTAG----T-TTT-C---AAGTA--AATCTC---ACTATACACTTTaatggtacatgtaccttcatgtgaccagctctagaccaatgaaattgactattattctttttagataatggtgaccattatttgttattttttttatacaaattaaagatatattgtgtgtagttatt
gi|5 : tcaaaattaattttactgaatgtcgcaaaagtggagtttgaa---ATTGGCAAGATCGAAA-AC-A-T--ACATTGTTCGTG---AC---------------A-C-ATCAAA---C--ATTTGAATACAC-AA-ATG-AAAAGTGCGGGTACGATTCATCAAGGACGTCAGT-GAAAAC-----A--TT-G-A-C------AT-T--------T-TTT-----AAGTC--AATTTC---A--AATCACTTTG-CA-ATTGC--A-ATATAA----T-----GGATAtaagtatcaggacaaatagtgtggttatcaatttaattatcatgcgtaaaaatgtagcatcttctaaaaattgataagcattaaatacttgtaataggattcaagatatcatgtcacttcataaaaatgaaaaaaaggtctaaatctacatgtaccacaggattttgagagatcactatcaaatgatattatttgtgcaaaaacatttcgtaaataatttgcaatgacaccaattcatgtctgttgtttttt
gi|6 : GGCAAGACTGGAATATGA-T--ACAGCGTTGGAG---TC--TG-TCGTCTGTT-ACA-GTCGAA--GC--AATTGA--------------AAAACGTAAGGTAAGATTCGAAGTGAACGACCTT-GAACGA-----A--TT-GCA-TTG-A-AAT-TGTAT----T-TTT-G---AAGTC--AATTTC---A--TTCCACTTTG-CT-ATTAC--GTGTATAA----TATC--CAATATAATGGGTATCAGtcaggcgcaaatatgttatatctcctgaaatgcattgacgatcatttattacttgtagtcaattttaagacatatatttgaataccacacctctcgtaaagaattattgtatgccacctcgcaaatctacccggcgtttttgaagagatcattcttaaatattttttgcgcgtgaactttaaataaataatttgcaatga
gi|7 : ATTACG-AAAGTGCAA---CA-TTG---ACTGAAAAAATTGGAA-AT-A-T--ATAGCGTTCGTG---AC--TG-TCATCTGTT---A-GTCAAA--GC--ACTTGACGTCAC-AC-ATG-AAAAGGGTA--T--------GCACGGATGACCAT-GACAAC-----A--CT-G-C-TT------T-TG--G----T-----------GTG--AATCTC---A--ATCCACTTTG-TATATTGT--ATGTATTA----------TAACAAA---TATAGCAGAAAGG----ACATAATCAAGT-GTAGCAG----CACCCgcgcgaacgtgtcgcggctatcttgtaaacttgatgcattaatgatcattatatgtgaataatcataaccattgtaaacaagtatgattatttgtcactttacaaagatcaaaagaatctaccataggtttttgaagaggtcatt
gi|8 : atgaaaacccaaagaaaattggtggaaatggggaatttcaatacatatatagatccagtcgtttttaaatctattgtttttagtaaaatgcagaaATTACG-ATCATGGAA---TA-TTA---ATTAGCAAGATTGGAA-AT-G-T--AAAGCGTTCGTG---AT--TG-TCATCTGTT-A-----------------TTGACATCAC-CA-ACG-AAAAGTACAGGTATGATTCAGCATGGACGACCGT-GAAAAC-----A--TTGG-A-TTGAA-AAC-TGAAAT---T-TTT-T---AAGTC--AAATCC---A--ATAAACTTTC-CA-TTTAC--A-----AA----T-----T-GT--ACTGTATAACAGGA
gi|9 : atgaaaaataaaagaacaaatgatcacataacaatacatattgatattaattttttatgttacggtgcactgcagcTATTGAG-ACCGTGGAA---CA-TTA---AATGACAAGATTGGAA-AT-AGT--GAAGAATTGGTG---AT--TG-CCATTTATT-AGA-GTTAAA---C--ATTCTCCGTCAC--A-ATG-AAAAGCGTAGGTATGATTTAGCAAGGACAACCGT-GAAAAC-----A-----G-G-CTT-A-AATATGTGG----A-TTT-GTTTAA-----AATTT-------ATGTA-TTAA-CG-ATTACTGATTTACTA----A-----TAGTAAATTGTAttttttttccgatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAGCATGTTACTTAGCCAAAGATCAGAAAAAGTTTCCCAAAGGTTTTGAAAAGATCACTATCAAATAATTTCTGCATGTTAGAATTCA
Unaligned ( gi|20 ): AATATTATCATTATATAAATTATAAACAGTGTGTTATT