lowQualScore : 11111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111 1111111111111111 2222222222222222222222222
lowQualScore : 55555555555555555555555 55555555555555555555555555555555555555 111 111 222 3333333 2 1 55555555555555555555555555 1 2 11 22 11 11 1 1 1 2 1 333 1 2222 1 2 1 1 1 2 2 2 1 1 2222 111 33 7777777777777777777777777777777777777777777777777777777777777777777 2 1 33 1 77777777 2 2222222222222222 1 2 22 11 2 1 1 2 2 2 1 0000000000000000000000000 1 2 1 2222 1 2 1 2 11 2 22222 2 1 1 11 1 2 2 1 1 2 1 1 11 22 22222 22 1 2 222 333333333 1 1 11111111 11111 1 11111111 55555555555555555555555 111111 11 333 11 66666666666666 111 33333333333 11 111 11111 333333 2222 111 1111111 44444444444 1 222 3333333333333333333333 111111 3333333333333 1 2 111 666666666666666666666666666666 2 11
lowQualScore : 2 5 33333333333333333333333 0 33333333333333333333333333333333333333 333 8 444 444 8 2222222 2 1 3 0 55 22222222222222222222222222 3 5 7 3 2 77 77 88 88 6 6 5 6 3 3 3 6 7 7 555 5 3333 5 0 5 2 5 5 0 2 3 0 0 5 5 3 3 3333 7 777 11 6 8888888888888888888888888888888888888888888888888888888888888888888 3 3 7 00 3 22222222 0 7777777777777777 5 2 0 3 3 77 77 0 5 5 0 0 0 5 0000000000000000000000000 5 0 5 6 7 1111 3 0 5 0 99 0 3 66666 0 5 5 88 2 5 0 4 0 5 5 0 5 88 5 88 77 99999 44 66 5 0 000 55 2 000000000 3 3 5 2 3 9 99999999 888 5 22222 0 0 66 1 88888888 33333333333333333333333 444444 22 333 33 11111111111111 444 11111111111 8 44 111 00000 111111 999 5 5 5 7777 0 88 0 888 5 8888888 99999999999 5 888 55 777 1 111 888 3 5 5 66 5 4444444444444444444444 5 666666 66 5 1 9999999999999 0 5 5 0 66 77 0 000 777777777777777777777777777777 0 0 0 0 8 8 11 6 2
lowQualScore : . . ....................... . ...................................... ... . ... ... . ....... . . . . .. .......................... . . . . . .. .. .. .. . . . . . . . . . . ... . .... . . . . . . . . . . . . . . . .... . ... .. . ................................................................... . . . .. . ........ . ................ . . . . . .. .. . . . . . . . ......................... . . . . . .... . . . . .. . . ..... . . . .. . . . . . . . . . .. . .. .. ..... .. .. . . ... .. . ......... . . . . . . ........ ... . ..... . . .. . ........ ....................... ...... .. ... .. .............. ... ........... . .. ... ..... ...... ... . . . .... . .. . ... . ....... ........... . ... .. ... . ... ... . . . .. . ...................... . ...... .. . . ............. . . . . .. .. . ... .............................. . . . . . . .. . .
lowQualScore : 5 0 44444444444444444444444 8 88888888888888888888888888888888888888 888 0 000 666 0 5555555 0 2 2 0 55 55555555555555555555555555 2 0 5 2 5 55 55 33 33 7 7 3 7 3 3 3 0 3 3 000 0 0000 5 0 0 5 0 5 0 5 0 0 0 0 5 0 0 5555 0 777 77 7 7777777777777777777777777777777777777777777777777777777777777777777 3 3 3 00 3 55555555 0 5555555555555555 0 5 0 0 0 55 55 0 5 5 0 0 0 5 0000000000000000000000000 5 0 0 7 3 7777 3 0 5 0 55 0 0 00000 0 5 0 55 5 0 0 0 0 5 5 0 0 00 0 55 55 55555 00 55 5 0 555 00 5 888888888 3 3 7 5 7 6 00000000 888 0 55555 4 0 99 5 11111111 00000000000000000000000 444444 22 222 88 00000000000000 000 77777777777 3 33 000 66666 777777 666 7 7 4 0000 1 77 1 666 7 0000000 00000000000 0 888 55 000 2 000 888 4 0 0 99 0 4444444444444444444444 3 333333 55 7 4 4444444444444 0 0 0 0 99 99 7 000 444444444444444444444444444444 8 8 4 8 0 0 66 5 5
consensus : ATGCCGGTTTATC----ATTA----TGGA-ATACCATGTTATTTCATGCATA------------------TAG-T--TTA--ATT-G--AAAGAACGACAACTCNT-A-AAGT---TAT--TCAT-ACA-------CCCCCTTCT-TATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCG-CGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCT-GCCAA-CATCGACTCTGTCT-CACGAAAT-AAGTT-TTTAAGCTTCATAGAAAAAAATGCCAGAGGGCTAAAAAATTCCCAACGGGGGCTCTTCCAAAGTCAATAAAGCCCGTAATCTACACACAGCCGGCCTCCCGACGTGTGTCTTCNAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTCGGACATGCGGTCACGTCGGGACAGTCTCCGTNGNCTAATAGTCATTCAGCTTATGATCCACTATCGCTGCAGTCAACACAGGCATATGCAGAACCTATTCAAGAGATTCAANATNCCACAAGCCATACCCTTTGTCCCAGTT-A-TGCC-GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGT-ACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTT-GACCTCTCCATTAGGA-GCTCATGTATCCCAGATTGTTCATTGAATAGAGTTACTTCTTTCAGGACCATTGTTCTGAAAATCCNAAATCAAATTATCTTTGTAAGNGNGTGTTTTTTCCTATGGCAAGCCTAGAATGAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCCATTCCTCTTGATATACGATATATTTAGAGGGGCGTCCAGTGAATAGTGTAGGGAGGTTGGAGTTGGGACTATTGAATGTGCAAATCCAAATTCCGATTAAAAAAGTCGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGCAAGCCAGCAACAACAAATCTCTGCAAACGAGTCCTTTCTAACCGAGAAGTGTTATGACTNCAATTATTGAAGGCGNTTTTGCCAGCAGAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAGTAATANACCCCACCCATCAATGANCTGTTCAAAAATCTATTTCAGTTCTTCTCAAGGGGAAATCATGCACCTGACAGCCTANNAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAACATATTCAAGTAAAGTTATAAACCAAATTATTCAGGCATTTATTANTTTTAGTTNNCAGTTTTCTCTTTGTCAGACANGTCTTGCGNCCNCCCCCCCCCCCC-CCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTAA-TATNATCAAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAAAA-T--CCGTG--------CAG---------------CAA-----TTC------AGTTTTCACGNGCATA-TTT--AAAA--------------TT---CTCAG-----------TGCAATTTC-GGTGTTAAGT---TAATGACGTCA-CAC--GT-GTGT-TTACTACT-TAGGAGTTAAAGGCGAAGAGTGG-AAA-AGGA---C---GCT----------TAT-A---TTATTCTGATCCCT--CGTCAAA---TGATGGCTT-GT---TAGCA-C-AT--CAA-AATTTGAGGG-AAGGAN-CATTT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAAT--TAAATCCNGGGATGGA-TT-GTTTT-GACTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
Reference ( gi|3 ) : ATGCCGGGTTATC----ATT-----TGGA-ATACCATGTTATTTCATGCATA------------------TAG-T--------------AAAGAACGACAACTCGT-A-AAGT---TAT--TCAT-ACA-------CCCCCCTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATC--ATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGTTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTAC-CACAGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACATCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCAAGTT-A-TGC--GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTCCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGG-------------------------GTGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACACGTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGTTAA-TATCATTGAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAAAA-T--CTGTG--------CAG---------------CAA-----TTC------AGTTTTCACGTCCA-A-TTT--AAAA--------------TT---CTCAG-----------TGCTATTTC-GGTGTTAAGT---TTATGA-GTC--CAC--GT-GTGT-TTACTAC--TGGGAGTTAAAGGTCAAGAGT-G-AAA-AGGA---C---GCT----------CAT-A---TTATTCTGATCCCT--CGTCAAA---TCATGGC-T-GT---TAGCA-C-AT--CAA-AATTTGAGGGCAAGGAA-CATTT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAAT--TAAATCCAGTGATGGA-TT-GTTTT-G-CTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
gi|2 : ATGCCGGGTTATC----ATT-----TGGA-ATACCATGTTATTTCATGCATA------------------TAG-T--------------AAAGAACGACAACTCGT-A-AAGT---TAT--TCAT-ACA-------CCCCCCTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATC--ATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGTTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTAC-CACAGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACATCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCAAGTT-A-TGC--GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTCCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGG-------------------------GTGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACACGTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGTTAA-TATCATTGAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAAAA-T--CTGTG--------CAG---------------CAA-----TTC------AGTTTTCACGTCCA-A-TTT--AAAA--------------TT---CTCAG-----------TGCTATTTC-GGTGTTAAGT---TTATGA-GTC--CAC--GT-GTGT-TTACTAC--TGGGAGTTAAAGGTCAAGAGT-G-AAA-AGGA---C---GCT----------CAT-A---TTATTCTGATCCCT--CGTCAAA---TCATGGC-T-GT---TAGCA-C-AT--CAA-AATTTGAGGGCAAGGAA-CATTT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAAT--TAAATCCAGTGATGGA-TT-GTTTT-G-CTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
gi|1 : ATGC-GGTTTATC----ATTA----TGGATAAACCATGTTATTTCATGCATATAGCCATGGATATAGACTTAG-TTAATCAGGTA----AAAGAACGACAACTCGT-A-AAGT---TAT---CAT-ACA-------CCCCCTTCT-TATTTAAAAACAAACTACAAT------AATC-------CCCCC--TTCTTATCGCTTCCGAG-CATGCG-CGTCATCA-CTTCCTTTCTGCCTCGG--ATCCAATCTTGATACA--CGGAAAAAATTATCGGAGTGATCAAATCT-GCCAAACATCGACTCTGTCTTCACGAAAT-AAGCT--TTAAGCTTCATAGAAAAA--TGCCAGAGGGCTAAAAAATTTC-AACGGG----CTTCCAAAGTCAATAA-GCCCGTAATCTACACA-AGCCGGCCTCCCGACGTGTGTCTTCAAAGTGTATTTAG-TCGGGGGAGAACTGACCA-GATGTCGGACATGCGGTCACGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATGATCCACTATCACTGCAGTCAACACAAGCATATGCAGAA-CTATTCAAGAGA-TCAACATGC----AGCCATACCCTTTGTCCCAGTTAA-TGCCGGGCGCCGATCTCGGA-C----------CGGA------AAC-----GA-----ATCAGATGCCCAACTTCCCGACATCAATCAATCAAGGT-ACGAGTGCTTAGTTTCGATTTATGTACCCTAGCCCATTTAATAGTTT-GACCTCTCCATTAGGACGCTCATGTATCCCAGATTGTTCATTGAATAGAGTTATTTCTTTCAGGACCATTGTTCTGAAAAT-CAAAATCAAATTATCTTTGTAAGGGGGTGTTTTTTCTTAT--CAAGCCTAGAATAAAGAAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACC-TGCAAAAGGCACCCATTAC-AAGCCATTCCTCTTGATATACGATATATTTAGAGGGGCATCCAG-GAATAGTGTAGGGAGGTTGGAGTTGGGACTATTGAATGTGCAAATCC-AATTCCGATTAAAAAAGTCGGT-CGATGCCTCC-TAAGCTGGGGTTC-ATTGATTCCGAGCTTT-GGTTTGTTTTATATGCAAGCCAGCAACAACAAATCTCTGCAAACGAGTCC-TTCTAACCGAGAAGTGTTATGAC-ACAATTATTGAAGGCGGTTT-----GCAGAAACAATATTGCAAGTA-TTTGCACCAAGGCATTA-ATTGT--GTAATAAACCCCA-CCATCAATGAACTGTTCAAAAATCTA-TTCAG-TCTTCTCAAGGGGAAATCATGCACCTGACAG-CTATAAAATCAG-CTCTTAGAAGCAAGCCATAG--CTGAACATATTCAAGTAAAGTTATAAACCAAATTATTCAGGCATTTATTAATTTTAGTTTACAG-TTTCTCTTTGTCAGATAA--CTTGTGGCCACCCC---------CCCCCCTTCCTTGGTCTTAGCTTTTAGACTGCCGAGGTTAA-TATCATTAAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAAAATT--CTGTG--------CAG---------------CAATT---TTC------AGTTTTCACGGGCATATTTT--AAAAACCGACCCATATCCTT---CTCAG-----------TGCAATTTC-TGTG-TAAGT---TAATGACGTCA-CAC--GT-GTGTGTTACTACT-TGGGAGTTAAAGGTCAAGAGTGG-AAA-AGGAC--C---GCT----------GAT-A---TTATTCTGATCCCT--CGTCAAA---TGATGGCTT-GT---TAGCA-C-AT--C-A-AATTTGA--GCAAGAAT-CATTT--AC--ATGCCATGATACTAAT--AAGCCATGA-TACTAA---TAAATCCAGGGATGGATTT-GTTTTGG-CTTGAACA--TAGCT--AGATTCAA---CTGCACCGGCAG------TGC---------------TTGGGATAG-ATCA-GAAAT-CTGCAAC--TACTTT-AACTGTA
gi|10 : ATGCCGGTTTATC----A-------------------ATTATTTCATGCATA------------------TAG-TCTTAATAATTGG--AAATAACGACAACTCTT-ACAAGT---AAT---CAT-ACATCACCACCCCCTTTCT-TATTTAGAA-CAAA-------------------------------T-CTTATCGCTTCCGAG-CATGCG-CGTCATCCACTTCCTTTCCGCATCA-GCATC--aact
gi|6 : TGCCGGTTTATC----AATATGGATGAA-ATA---TGTTATCTCAAGGAT-------------------TAGGT--------------ACAGAATGATAAATA---A-AAGTAATTAT--CCACCACA-------CACCTTTTTTTAT--AAAA-CAAACGACAATTCTTATAATCAGTAACACTTCCATT-CTT-TCCCCTTTGGAGCATGCG-TGTTATTAACTTT-TTTCTGCCTCAG-CATCCAACCTTGACACAGACAGAAAA--TTATCG-AGT-ATCCAATCTGGC-AA-CATCGACTTTGTTT-CATAGAAT--AATCTTTCAAGC-TCATTGGAAAAAATGCcaag
gi|21 : cGGGTTATCCACTATT-----TGGA--TAAC-TGTTATT-CATGCATA------------------TAG-TGCTTAGTAATAGGTAAAGAACGACAACTCTTAA-AAGT---TATCATCAT-At
gi|12 : tCTTTGTCCCAGTT-AATGCC-GGCGCCGATCTCGGACCGGAAACGAATCAGATGCCACAACTTCCTGATATCAATC-AAT-------------------------CAAGGT-ACGAGTGC-TAATTTCGATTTATGTACCCTTGTCCATTT-ATAGTTT-GACCTCTCCATTAGGA-GCTCATGtca
gi|26 : ATGCCTCCGTAAGCTTGGGTTCTATTGATTCGGAGCTTTGG--TTG-TT
gi|24 : CCACCCCCCTTCT-TGGCCTTAGCTTTTAGACTGCCGAGGTTAA-
gi|7 : tgtcagataacttgtgg-AAGCTAA-TATGATTAAGCTTATTTTTTA---T---AAAATGTTGGTGGA---A-ATGGCACCCGATCAAAAAT--CCGTGAGTAATTTCAGAGAATAACGTTCTTTCAAAACACCTC------AGTTTTCACGTGCA-----T--AAAGCGG-----------TT---CCCAAATATCCTTTCATGCAATATC-TGTGT-AAGT---TAATGACGTCA-CAC--GT-GTGT-TTACTACTTTAGGAGTTAAAG
gi|14 : ttaagaataaactagcgaagttttacataa-AAGCTAA-TATGATCAAACTTATTTTTTTTTTA---AATATGTTGGTGGA---A-A-----CCCGATCAAAA-T--CCGTG--------CAG---------------TAAT----TTC------AGt
gi|13 : ttaaagttaaactaccgaggttttacataa-AAGCTAACTATGATCAAACTTATTTTTTT---TTTTAATATGTTGGTGGA---A-A-----CCCGATCAAAA-T--CCGTG--------CAG---------------TAAT----TTC------AGagataatcttactcaa
gi|9 : taaagttaaactaccgaggttttacataaA-TGTCATCAAATTTATTTTCTT---A---AATATGCTGGAGAA---A-A-----CCCGATCAAAA-T--CGGTG--------CTA---------------AAA-----TTC------agataatcttactcaa
gi|5 : actttcaagttttgccacggaggttttactcgTAAACTTATTTCCTT---A---AACATGCTGGTGAACACACA-----CCCGATCAAAA-T--CCGTG--------CAAT--------------TAA-----TTC------cggagattctctgtttgcacgtatgcaaaaaccattgatatccttcaaagtgcaaccttcggtccggtttaattcaa
gi|1 : acacacaagctaTTTTTA---A---AATATGCCCGTGAA---A-A-----CT-G---AAAA-TTGCTGCA--------CAG----------------AA-----TTTTGATCGAGTTTCCACCAACATA-TTTTAAAAA--------------TTAAGTTTAA-----------TGATATTctgagataatcgtattcaaacacctcagtcttcacctgcataagcgatcgatatccttctaagtgcaacttccggtttaaatgcaatcgcagtaaatgacgtcataagtgtgtttacaacgaagacgctgcttttatcacgatattattcttacccctcgtcaaatgatggcttggtagcacatcaagatttgaggaagaatgatactaaaagtaatgctgtggtggattcgttttgccttgaactaagctacatattcaagttctgcactgtagaaaaaataaatggtatagatcagaaatctngaacttagctacatattcaagttctg
gi|16 : atgcggtttatcattatggataaaccatgttatttcatgcatatagccatggatatagacttagttaatcaggtaaaagaacgacaactcgtaaagttatcatacacccccttcttatttaaaaacaaactacaataatccccccttcttatcgcttccgagcatgcgcgtcatcacttcctttctgcctcggatccaatcttgatacacggaaaaaattatcggagtgatcaaatctgccaaacatcgactctgtcttcacgaaataagctttaagcttcatagaaaaatgccagagggctaaaaaatttcaacgggcttccaaagtcaataagcccgtaatctacacaagccggcctcccgacgtgtgtcttcaaagtgtatttagtcgggggagaactgaccagatgtcggacatgcggtcacgtcgggacagtctccgttggctaatagtcattcagcttatgatccactatcactgcagtcaacacaagcatatgcagaactattcaagagatcaacatgcagccataccctttgtcccagttaatgccgggcgccgatctcggaccggaaacgaatcagatgcccaacttcccgacatcaatcaatcaaggtacgagtgcttagtttcgatttatgtaccctagcccatttaatagtttgacctctccattaggacgctcatgtatcccagattgttcattgaatagagttatttctttcaggaccattgttctgaaaatcaaaatcaaattatctttgtaagggggtgttttttcttatcaagcctagaataaagaaaataagataacaaacttcatgcaattttatttatgcatctatttacctgcaaaaggcacccattacaagccattcctcttgatatacgatatatttagaggggcatccaggaatagtgtagggaggttggagttgggactattgaatgtgcaaatccaattccgattaaaaaagtcggtcgatgcctcctaagctggggttcattgattccgagctttggtttgttttatatgcaagccagcaacaacaaatctctgcaaacgagtccttctaaccgagaagtgttatgacacaattattgaaggcggtttgcagaaacaatattgcaagtatttgcaccaaggcattaattgtgtaataaaccccaccatcaatgaactgttcaaaaatctattcagtcttctcaaggggaaatcatgcacctgacagctataaaatcagctcttagaagcaagccatagctgaacatattcaagtaaagttataaaccaaattattcaggcatttattaattttagtttacagtttctctttgtcagataacttgtggccaccccccccccttccttggtcttagcttttagactgccgaggtt--------------TT---CTCAG-----------TGCAATTTCTGGTG-TAAGT---TAATGACGTCA-CAT--GT-GTGT-TTACTACT-TAGGAGTTAAAGGCGAAGAGTGG-AAA-AAGA---CGCTGCT----------TAT-A---TTccgacccatatccttctcagtgcaatttctgtgtaagttaatgacgtcacacgtgtgtgttactacttgggagttaaaggtcaagagtggaaaaggaccgctgatattattctgatccctcgtcaaatgatggcttgttagcacatcaaatttgagcaagaatcatttacatgccatgatactaataagccatgatactaataaatccagggatggatttgttttggcttgaacatagctagattcaactgcaccggcagtgcttgggatagatcagaaatctgcaactactttaactgtaaact
gi|17 : attttaaagcggcccatatccG-----------TGCAATTTCTGGT-TTAAGTAAATTATG---TCA-TAA--GT-GTGT-TTACAACG-TAAGAGTTAAAGGCGGAGAGTGG-AAA-AAGATTCT---GCT----------TAC-AGCGTTA----AATCTCT--CGTCAAA---T
gi|4 : TTCC-AGT-TTAAGT---TAATGA-CTCATTAA--GTTGCGT-TTAC---------------AGGT-AGGAAT-GGAAA-AAGA---C---GCTGTGTATCAACTAT-A---TTATTCTGATCCCA--CGTTCAA---TGAGGCC-T-GT---TA-CA-CGAT--CAA-A-------------GAA----TT--AT--ATTC---------AAT----GCTATGA-TACTAATAGT-AATGCTG-GGTGGATTT-GTTTT-A-C-TGAACATGTAG-T--AGATTCAA---CTGCAC-TGTAGC-----TGCTCAGAAATAGAAATATTGGGATAG-ATCAGGAAATCCTGCAACTATCTTTCAAAAT-TACAT
gi|11 : tttactataactagatgtcatccaaactatttttagtatctgtgaaaaccgatcaaacgttgcgtaattcccgggataattctattcaaacacctcagttatcacctgtataagcggatcgatatctttctaaattcaactGTAAAAT---TAATGA-GGT--CATAAGT-GTGT-TTACAAC--T------TA-----CA-GAGT-G-GAAGAGGA---C---CCTATTTAC----CACGA---TAATGCTGATTGCC--TGTCAAA---TAATGAT-TCGT---TAACA-C-AT--CAA-GATTta
gi|25 : aaatgaaaaAAAGGCGGAGAGT-GGAAA-AAGA---C---GCT-----------AT-A---TTATTCTGATCCCT--CATCAAA---TGATGGactgatagtgaaaccgtttcgctttgaacttagctgca
gi|5 : AT-A---TTATTCTTACCCCT--CGTCAAA---TGATGGCTT-GG---TAGCA-C-AT--CAA-GATTTGAGG--AAGA-------------------ATGATAC---TAAAAG---TAA-TGCT-------------GTGGTGGA-TTCGTTTT-GCCTTGAACT--AAGCTACATATTCAAGTTCTGCAC-TGTAGAAAAAATAA---------------ATGGTATAG-ATCA-GAAAT-CTNGAACTT
gi|23 : acacacaagctataaacttatttccttaaacatgctggtgaacacacacccgatcaaaatccgtgcaattaattcctgagataatcgtattcaaacacctcagtcttcacctgcataagcgatcgatatccttctaagtgcaacttccggtttaaatgcaatcgcagtaaatgacgtcataagtgtgtttacaacgaagacgctgcttttatcacgTATTCTGATCCCT--CGTCAAA---TGATGGCTT-CT---TATCA-C-AT--CAC-AATATGGGG--AAGAAT-CA--T--ACCAATGCTATGATACTAATAagctacatattcaagttctg
gi|8 : TAATCTGATCCCTCACATCTAATTGTTATGGC-TCGTATGTAACAGC-ATTCCAAGAATTTGGAGG-AAGAAT-CATTTTCAT--ATGCCA
gi|15 : atccttaacacatttagtgcaacttctggtttatcagttgaatggagattcaaagtgtggtttagcaaaaaggaggtaaaacaagggcggagaggtggaaaaagaccgcaaataaaaaacagtaatatctacccTGATCCCT--CGTCAAA---TAACGGC-TTGT---TAGCT-C-AT--CAA-AATTTGAG---AAAGAATCAATT--CC--ATGTTATGATAC-----AAATC-----------------AATCTGG-GATGGA-TT-ATTTG-A-CTTGAACA--TAGCT--AGATTCAA---CTGCccaagccaatgag
gi|22 : AGCCCTGAATAGTAAT--T-------GGGGTGGA-TT-GTTTT-GACTTAAACA--TAGCT--A----CAA-------AAGG----------TGC---------------T----A-AAAA--A-GAAAT-CTGCAACT--ACTTTGAACTGTACA
gi|18 : ATGA-TACTAA---TAAATGCTGGGATAGA-TT-GTTTT-GACTTGAACA--TGGCT--AGATTCAA---CTGCAC
gi|28 : tGATGGA-TT-GTTTT-GACTTGAACA--TGGtttacataactgctcagaaaaaaaatattgggatagataaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): ATCCGTGCAATAATTCCCGCGATAATTTTATTGAAACACCTCAGTTTGCACCTGCTAAAATGATTGATATCCTTCTCAGTGCAACTTCCGGTTTATAATAC
Unaligned ( gi|20 ): TTATGATATGAATAGTAATGCTGGGGTGGATTTCTTTTACTTTGAATTTAGCTACAGTAATGGCTGATCAGAAAAAAAAATATTAGGACAGATAAGAAAT
Unaligned ( gi|27 ): TTAAATGCAATCGCAGTAAATGAGGTCATAAGTGTGTTTACA
Alignments
lowQualScore : 111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111 11111111111111111 1111111111111111111111111
lowQualScore : 111111 3333333333 555555555555555555555555555555555555 1111 111 2222222 1 33333333333333333 11 1 1 11 11 11 2 1 1 2 2 333 2 2 2 2 2 1 1 5555555555555555555555555555555555555555555555555555555555555 2 1 22 1 77777777 2 11111111111111111 2 33 2 2 2 2 8888888888888888888888888 2 1 11 1 2 2 2 2 2 2 2 33 33 2 22 1 111 2222 1 1 11111111 11111 111111111 888888888888888888888888888888888888888888888888888888888888888888 88888888888888888888888888888888888888 1 222222222222222 11111111 555555555555555555555555555555555555555555 11111111 111111 11 1 111111 11 3333333 11 444444444444444444444444 1 11
lowQualScore : 3 6 666666 0000000000 000000000000000000000000000000000000 1 6 6 4444 000 6 6666666 6 0 8 0 11111111111111111 11 8 0 3 6 0 0 00 33 33 2 2 0 0 0 2 0 0 7 3 3 777 6 6 0 0 7 3 6 1 6 7 3 0 0 0 1 11 3 3 6 7 1 1 6 2 0 5 0 6666666666666666666666666666666666666666666666666666666666666 0 0 3 22 0 11111111 3 77777777777777777 6 1 3 1 1 00 6 3 7 7 3 3 3 88 8888888888888888888888888 7 3 6 2 3 0 33 0 3 0 7 3 88 3 1 7 3 7 6 7 0 1 6 3 11 3 7 7 3 6 22 6 7 00 00 3 44 22 7 5 999 33 33 7777 0 1 4 4 1 4 77777777 777 4 11111 777777777 8 66 333333333333333333333333333333333333333333333333333333333333333333 1 7 00000000000000000000000000000000000000 4 66 3 444444444444444 4 7777 0 4 6 4 4 4 55555555 0 99999 7 4 2 0 000000000000000000000000000000000000000000 44444444 777 000000 55 3 55 3 777 1 4 4 66 4 55 0 3 2 3 222222 1 22 0 55 0 3333333 4 8 4 6 66 66 888 77 555555555555555555555555 5 6 6 00 3
lowQualScore : . . ...... .......... .................................... . . . .... ... . ....... . . . . ................. .. . . . . . . .. .. .. . . . . . . . . . . . ... . . . . . . . . . . . . . . . .. . . . . . . . . . . . ............................................................. . . . .. . ........ . ................. . . . . . .. . . . . . . . .. ......................... . . . . . . .. . . . . . .. . . . . . . . . . . . .. . . . . . .. . . .. .. . .. .. . . ... .. .. .... . . . . . . ........ ... . ..... ......... . .. .................................................................. . . ...................................... . .. . ............... . .... . . . . . . ........ . ..... . . . . .......................................... ........ ... ...... .. . .. . ... . . . .. . .. . . . . ...... . .. . .. . ....... . . . . .. .. ... .. ........................ . . . .. .
lowQualScore : 0 7 555555 5555555555 222222222222222222222222222222222222 0 7 7 2222 888 7 0000000 0 8 0 6 44444444444444444 00 0 8 2 0 8 0 66 88 88 5 5 0 0 0 0 0 0 0 2 2 777 7 7 7 7 3 7 7 0 7 3 3 7 7 7 0 77 3 7 7 3 0 0 7 5 0 0 0 8888888888888888888888888888888888888888888888888888888888888 0 0 2 55 0 33333333 7 33333333333333333 7 0 7 0 0 33 7 7 3 3 7 7 3 00 0000000000000000000000000 3 7 7 5 2 0 88 0 7 7 3 3 33 7 0 3 7 3 7 3 7 0 7 7 77 7 3 3 7 7 00 7 3 77 77 3 77 00 3 5 000 55 55 5555 0 4 4 4 0 4 66666666 888 4 11111 888888888 9 11 444444444444444444444444444444444444444444444444444444444444444444 0 3 00000000000000000000000000000000000000 4 11 3 888888888888888 0 1111 8 0 6 0 0 0 77777777 6 11111 5 0 5 5 666666666666666666666666666666666666666666 55555555 000 555555 00 6 55 6 888 9 4 4 11 4 99 0 1 8 4 111111 7 22 7 11 1 1111111 1 9 4 2 11 99 888 55 333333333333333333333333 5 7 7 77 2
consensus : ATGCCGGNTTATC-ATTAT--GGA----ATACCATGTTATTTCATGCATATAGT-----------------T--T----AAT-----G--AAAGAACGACAACTCGT-A-AAG----TTAT--TCAT-ACA-------CCCCCTTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGCTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTAC-CACAGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTCG-ACATGCGGTCACGTCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCNAGTTAATGCCGG-CGCCGATCTCGGACC----------CGGA------AAC-----G--------------------------A-----ATCGATCAAGGTGACGAGTGCT-AATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTNCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT--------------GT-CTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATATT-AGAGGG-CGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGCA-GCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTAT-GAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTGT-CAAAAATCTATTTCAGTTCTTCTCAAGGGGAA-TCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAACAT--TCAAGTAAAGTTA--AAC-AAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTCTTTGTCAGACANGTCTTGCGNCCNCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTA-A-TATCATC-AAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAAA---------A-T--CCGTG-----------CAG---------------CAA-----TTC--------------------------AGTTTTCACGTGCATA-------T-----TCAAAA--------------T----TCTCAGTGCAA-TTT--C-GGTGTTA-----------AGTT-AATGACG--TCAC-ANGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAGGA---C---GC-------------T----------T--------AT--------A---T------TATTCTGATCCCT--CGTC-AAATG--ATGGCTTGT---TAGCA-C-AT--CAA-AATTTGAGGG-AAGAATCATTT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCNGGGATGGA-TT-GTTTTGACTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
Reference ( family-1601 ) : ATGCCGGTTTATC-ATTAT--GGA----ATACCATGTTATTTCATGCATATAGT-----------------T--T----AAT----TG--AAAGAACGACAACTCNT-A-AAG----TTAT--TCAT-ACA-------CCCCCTTCT-TATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCG-CGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCT-GCCAA-CATCGACTCTGTCT-CACGAAAT-AAGTT-TTTAAGCTTCATAGAAAAAAATGCCAGAGGGCTAAAAAATTCCCAACGGGGGCTCTTCCAAAGTCAATAAAGCCCGTAATCTACACACAGCCGGCCTCCCGACGTGTGTCTTCNAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTCGGACATGCGGTCACGTCGGGACAGTCTCCGTNGNCTAATAGTCATTCAGCTTATGATCCACTATCGCTGCAGTCAACACAGGCATATGCAGAACCTATTCAAGAGATTCAANATNCCACAAGCCATACCCTTTGTCCCAGTTA-TGCCGG-CGCCGATCTCGGACC----------CGGA------AAC-----G--------------------------A-----ATCGATCAAGGT-ACGAGTGCT-AATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTG-ACCTCTCCATTAGGA-GCTCATGTATCCCAGATTGTTCATTGAATAGAGTTACTTCTTTCAGGACCATTGTTCTGAAAATCCNAAATCAAATTATCTTTGTAAGNGNGTGTTTTTTCCTATGGCAAGCCTAGAATGAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCCATTCCTCTTGATATACGATATATTTAGAGGGGCGTCCAGTGAATAGTGTAGGGAGGTTGGAGTTGGGACTATTGAATGTGCAAATCCAAATTCCGATTAAAAAAGTCGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGCAAGCCAGCAACAACAAATCTCTGCAAACGAGTCCTTTCTAACCGAGAAGTGTTATGACTNCAATTATTGAAGGCGNTTTTGCCAGCAGAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAGTAATANACCCCACCCATCAATGANCTGTTCAAAAATCTATTTCAGTTCTTCTCAAGGGGAAATCATGCACCTGACAGCCTANNAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAACATATTCAAGTAAAGTTATAAACCAAATTATTCAGGCATTTATTANTTTTAGTTNNCAGTTTTCTCTTTGTCAGACANGTCTTGCGNCCNCCCCCCCCC-CCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTA-A-TATNATC-AAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAAA---------A-T--CCGTG-----------CAG---------------CAA-----TTC--------------------------AGTTTTCACGNGCATA-------T-----TTAAAA--------------T----TCTCAGTGCAA-TTT--C-GGTGTTA-----------AGTT-AATGACG--TCAC-ACGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAGGA---C---GC-------------T----------T--------AT--------A---T------TATTCTGATCCCT--CGTC-AAATG--ATGGCTTGT---TAGCA-C-AT--CAA-AATTTGAGGG-AAGGANCATTT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCNGGGATGGA-TT-GTTTTGACTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
gi|1 : ATGC-GGTTTATC-ATTAT--GGAT---AAACCATGTTATTTCATGCATATAGCCATGGATATAGACTTAGT--T----AATCAGGTA--AAAGAACGACAACTCGT-A-AAG----TTAT---CAT-ACA-------CCCCCTTCT-TATTTAAAAACAAACTACAAT------AATC-------CCCCC--TTCTTATCGCTTCCGAG-CATGCG-CGTCATCA-CTTCCTTTCTGCCTCGG--ATCCAATCTTGATACA--CGGAAAAAATTATCGGAGTGATCAAATCT-GCCAAACATCGACTCTGTCTTCACGAAAT-AAGCT-TT-AAGCTTCATAGAAAAA--TGCCAGAGGGCTAAAAAATTTC-AACGGG----CTTCCAAAGTCAATAA-GCCCGTAATCTACACA-AGCCGGCCTCCCGACGTGTGTCTTCAAAGTGTATTTAG-TCGGGGGAGAACTGACCA-GATGTCGGACATGCGGTCACGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATGATCCACTATCACTGCAGTCAACACAAGCATATGCAGAAC-TATTCAAGAGAT-CAACATGC----AGCCATACCCTTTGTCCCAGTTAATGCCGGGCGCCGATCTCGGACC-----------GGA------AAC-----GAATCAGATGCCCAACTTCCCGACATCA-----ATCAATCAAGGT-ACGAGTGCTTAGTTTCGATTTATGTACCCTAGCCCATTTAATAGTTTG-ACCTCTCCATTAGGACGCTCATGTATCCCAGATTGTTCATTGAATAGAGTTATTTCTTTCAGGACCATTGTTCTGAAAAT-CAAAATCAAATTATCTTTGTAAGGGGGTGTTTTTTCTTAT--CAAGCCTAGAATAAAGAAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACC-TGCAAAAGGCACCCATTAC-AAGCCATTCCTCTTGATATACGATATATTTAGAGGGGCATCCAG-GAATAGTGTAGGGAGGTTGGAGTTGGGACTATTGAATGTGCAAATCC-AATTCCGATTAAAAAAGTCGGT-CGATGCCTCC-TAAGCTGGGGTTC-ATTGATTCCGAGCTTT-GGTTTGTTTTATATGCAAGCCAGCAACAACAAATCTCTGCAAACGAGTCC-TTCTAACCGAGAAGTGTTATGAC-ACAATTATTGAAGGCGGTTT-----GCAGAAACAATATTGCAAGTA-TTTGCACCAAGGCATTA-ATTGT--GTAATAAACCCCA-CCATCAATGAACTGTTCAAAAATCTA-TTCAG-TCTTCTCAAGGGGAAATCATGCACCTGACAG-CTATAAAATCAG-CTCTTAGAAGCAAGCCATAG--CTGAACATATTCAAGTAAAGTTATAAACCAAATTATTCAGGCATTTATTAATTTTAGTTTACAG-TTTCTCTTTGTCAGATAA--CTTGTGGCCA--------C-CCCCCCCCCTTCCTTGGTCTTAGCTTTTAGACTGCCGAGGTTA-A-TATCATT-AAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAAA---------ATT--CTGTG-----------CAG---------------CAATT---TTC--------------------------AGTTTTCACGGGCATAT------T-----TTAAAAACCGACCCATATCCT----TCTCAGTGCAA-TTT--C-TGTG-TA-----------AGTT-AATGACG--TCAC-ACGT-GTG-TGTTACTAC-TTGGGAGTTAAA-----GGTCAAGAG-TGGAAAAGGAC--C---GC-------------T----------G--------AT--------A---T------TATTCTGATCCCT--CGTC-AAATG--ATGGCTTGT---TAGCA-C-AT--C-A-AATTTGA-GC-AAGAATCATTT--AC--ATGCCATGATACTAAT--AAGCCATGA-TACTAA-TAAATCCAGGGATGGATTT-GTTTTGGCTTGAACA--TAGCT--AGATTCAA---CTGCACCGGCAG------TGC---------------TTGGGATAG-ATCA-GAAAT-CTGCAAC--TACTTT-AACTGTA
gi|10 : ATGCCGGTTTATC-A--------------------ATTATTTCATGCATATAGT-----------------C--TTAATAAT----TGG-AAATAACGACAACTCTT-ACAAG-----TAA--TCAT-ACATCACCACCCCCTTTCT-TATTTAGAA-CAAA-------------------------------T-CTTATCGCTTCCGA-GCATGCG-CGTCATCCACTTCCTTTCCGCATCA-GCATCCAAaact
gi|11 : GTAA-----------AATT-AATGAGG--TCAT-AAGT-GTG-T-TTACAAC-TTA----------------C--AGAG-TGGAAGAGGA---C----C-------------C----------T--------ATTTACCACGA---T------AATGCTGATTGCC--TGTC-AAATA--ATGATTCGT---TAACA-C-AT--CAA-GATTg
gi|12 : aaatgaaaaCTTTGTCCCAGTTAATGCCGG-CGCCGATCTCGGACCGGAAACGAATCAGATGCCACAACTTCCTG--------------------------ATATCAATCAATCAAGGT-ACGAGTGCT-AATTTCGATTTATGTACCCTTGTCCATTT-ATAGTTTG-ACCTCTCCATTAGGA-GCTCATGactgatagtgaaaccgtttcgctttgaacttagctgca
gi|13 : -AAGCTA-ACTATGATC-AAACTTATTTTTTT---TTTTAATATGTTGGTGGA---A-A-----CCCGATCAAA---------A-T--CCGTG-----------CAG---------------TAAT----TTC--------------------------AG
gi|14 : taaagttaaactaccgaggttttacataa-AAGCTA-A-TATGATC-AAACTTATTTTTTTTTTA---AATATGTTGGTGGA---A-A-----CCCGATCAAA---------A-T--CCGTG-----------CAG---------------TAAT----TTC--------------------------AGagataatcttactcaa
gi|15 : ttaaagttaaactaccgaggttttacataaTGATCCCT--CGTC-AAATA--ACGGCTTGT---TAGCT-C-AT--CAA-AATTTGA-GA-AAGAATCAATT--CC--ATGTTATGATACAAAT---------------CAAT------CTGGGATGGA-TT-A-TTTGACTTGAACA--TAGCT--AGATTCAA---CTGCagataatcttactcaa
gi|16 : --------------T----TCTCAGTGCAA-TTT--CTGGTG-TA-----------AGTT-AATGACG--TCAC-ATGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAAGA---CGCTGC-------------T----------T--------AT--------A---T------T
gi|17 : attttaaagcggcccatatccGTGCAA-TTT--CTGGT-TTA-----------AGTA-AATTATG--TCAT-AAGT-GTG-T-TTACAAC-GTAAGAGTTAAA-----GGCGGAGAG-TGGAAAAAGATTCT---GC-------------T----------T--------AC--------AGCGT------TA----AATCTCT--CGTC-AAAT
gi|18 : ATGA-TACTAAT-AAATGCTGGGATAGA-TT-GTTTTGACTTGAACA--TGGCT--AGATTCAA---CTGCAC
gi|2 : tATGCCGGGTTATC-ATT-T--GGA----ATACCATGTTATTTCATGCATATAGT------------------------------------AAAGAACGACAACTCGT-A-AAG----TTAT--TCAT-ACA-------CCCCCCTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATC--ATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGTTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTAC-CACAGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTCG-ACATGCGGTCACATCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCAAGTTA-TGC-GG-CGCCGATCTCGGACC----------CGGA------AAC-----G--------------------------A-----ATCGATCAAGGTGACGAGTGCT-AATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTCCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT--------------GT-CTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATATT-AGAGGG-CGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGCA-GCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTAT-GAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTGT-CAAAAATCTATTTCAGTTCTTCTCAAGGGGAA-TCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAACAT--TCAAGTAAAGTTA--AAC-AAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTCTT-GTCAGACACGTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGTTA-A-TATCATT-GAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAAA---------A-T--CTGTG-----------CAG---------------CAA-----TTC--------------------------AGTTTTCACGTCCA-A-------T-----TTAAAA--------------T----TCTCAGTGCTA-TTT--C-GGTGTTA-----------AGTT-TATGA-G--TC-C-ACGT-GTG-T-TTACTAC--TGGGAGTTAAA-----GGTCAAGAG-T-GAAAAGGA---C---GC-------------T----------C--------AT--------A---T------TATTCTGATCCCT--CGTC-AAATC--ATGGC-TGT---TAGCA-C-AT--CAA-AATTTGAGGGCAAGGAACATTT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCAGTGATGGA-TT-GTTTTG-CTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATACtttacataactgctcagaaaaaaaatattgggatagataaa
gi|21 : GGGTTATCCACTATTTGGA-----TAAC-TGTTATT-CATGCATATAGTGCT--------------TAGT----AAT----AGGTAAAGAACGACAACTCTTAA-AAG----TTATCATCAT-A
gi|22 : tAGCCCTGAATAGTAATT-------GGGGTGGA-TT-GTTTTGACTTAAACA--TAGCT--A----CAA-------AAG----G------TGC---------------T----A-AAAA--A-GAAAT-CTGCAAC--TACTTTGAACTGTACAtca
gi|23 : ------TATTCTGATCCCT--CGTC-AAATG--ATGGCTTCT---TATCA-C-AT--CAC-AATATG-GGG-AAGAATCA--T--ACCAATGCTATGATACTAATA
gi|24 : TGTCAGATAA--CTTGTGGCCACCCCCC-------------TTCT-TGGCCTTAGCTTTTAGACTGCCGAGGTTA-A-
gi|25 : AAA-----GGCGGAGAG-TGGAAAAAGA---C---GC-------------T-------------------AT--------A---T------TATTCTGATCCCT--CATC-AAATG--ATGG
gi|26 : ATGCCTCCGTAAGCTTGGGTTCTATTGATTCGGAGCTTTGG--TTG-TT
gi|28 : CTGGGATGGA-TT-GTTTTGACTTGAACA--TGG
gi|3 : tgATGCCGGGTTATC-ATT-T--GGA----ATACCATGTTATTTCATGCATATAGT------------------------------------AAAGAACGACAACTCGT-A-AAG----TTAT--TCAT-ACA-------CCCCCCTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATC--ATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGTTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTAC-CACAGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTCG-ACATGCGGTCACATCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCAAGTTA-TGC-GG-CGCCGATCTCGGACC----------CGGA------AAC-----G--------------------------A-----ATCGATCAAGGTGACGAGTGCT-AATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTCCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT--------------GT-CTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATATT-AGAGGG-CGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGCA-GCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTAT-GAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTGT-CAAAAATCTATTTCAGTTCTTCTCAAGGGGAA-TCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAACAT--TCAAGTAAAGTTA--AAC-AAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTCTT-GTCAGACACGTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGTTA-A-TATCATT-GAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAAA---------A-T--CTGTG-----------CAG---------------CAA-----TTC--------------------------AGTTTTCACGTCCA-A-------T-----TTAAAA--------------T----TCTCAGTGCTA-TTT--C-GGTGTTA-----------AGTT-TATGA-G--TC-C-ACGT-GTG-T-TTACTAC--TGGGAGTTAAA-----GGTCAAGAG-T-GAAAAGGA---C---GC-------------T----------C--------AT--------A---T------TATTCTGATCCCT--CGTC-AAATC--ATGGC-TGT---TAGCA-C-AT--CAA-AATTTGAGGGCAAGGAACATTT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCAGTGATGGA-TT-GTTTTG-CTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
gi|4 : CTAGA-TGTCATCCAAACT-ATTTTT---------AGTATCT--GTGAA---A-A-----CC-GATCAAACGTTGCGTAA-TTCCCGGGATAATTCTATTCAAA--------------CAC-----CTC--------------------------AGTTATCACCTGTATA-------AGCGGATCGATA--------------TCTT-TCTAAATTCAA-CTTTCC-AGT-TTA-----------AGTT-AATGAC---TCATTAAGTTGCG-T-TTAC---------------A-----GGT-AGGAA-TGGAAAAAGA---C---GC-------------TGTGTATCAACT--------AT--------A---T------TATTCTGATCCCA--CGTT-CAATG--A-GGCCTGT---TA-CA-CGAT--CAA-A--------G-AATTAT-ATTC--A---ATGCTATGATACTAATA------GTAA-TGCT------------GGGTGGATTT-GTTTT-AC-TGAACATGTAG-T--AGATTCAA---CTGCAC-TGTAGC-----TGCTCAGAAATAGAAATATTGGGATAG-ATCAGGAAATCCTGCAACTATCTTTCAAAAT-TACAT
gi|5 : tttactataa-AAACTTATTTCCTT---A---AACATGCTGGTGAACACACA-----CCCGATCAAA---------A-T--CCGTG-----------CAAT--------------TAA-----TTCCTGAGATAATCGTATTCAAACACCTCAGTCTTCACCTGCATAAGCG---A-----TCGATATCC-----------T----TCTAAGTGCAACTTC--C-GGT-TTAAATGCAATCGCAGTA-AATGACG--TCAT-AAGT-GTG-T-TTAC-------------AA--------CGAAG---------ACGC---T---GC-------------T----------TTTATCACGAT--------A---T------TATTCTTACCCCT--CGTC-AAATG--ATGGCTTGG---TAGCA-C-AT--CAA-GATTTGA-GG-AAGA------------------ATGATAC---TAAAAGTAATG---------------CTGTGGTGGA-TTCGTTTTGCCTTGAACT--AAGCTACATATTCAAGTTCTGCAC-TGTAGAAAAAATAA---------------ATGGTATAG-ATCA-GAAAT-CTNGAACTTta
gi|6 : acacacaagctatTGCCGGTTTATC-AATAT--GGATGAAATA---TGTTATCTCAAGGAT-TAGG-----------------T------------------ACAGAATGATAA---AT-A-AAAGTAATTAT--CCACCACA-------CACCTTTTT-T-TATAAAA-CAAACGACAATTCTTATAATCAGTAACACTTCCATT-CTT-TCCCCTTTGGAGCATGCG-TGTTATTAACTTT-TTTCTGCCTCAG-CATCCAACCTTGACACAGACAGAAAA--TTATCG-AGT-ATCCAATCT-GGCAA-CATCGACTTTGTTT-CATAGAAT-AATCT-TTCAAGC-TCATTGGAAAAAATGCagctacatattcaagttctg
gi|7 : c-AAGCTA-A-TATGATT-AAGCTTATTTTTTA---T---AAAATGTTGGTGGA---A-ATGGCACCCGATCAAA---------AAT--CCGTGAGTAATTT---CAGAGAATAACGTTCTTTCAAAACACCTC--------------------------AGTTTTCACGTGCATAAAGCGGTT-----CCCAAA--------------TATCCTTTCA-TGCAA-TAT--C-TGTG-TA-----------AGTT-AATGACG--TCAC-ACGT-GTG-T-TTACTACTTTAGGAGTTAAA-----Gt
gi|8 : ttaagaataaactagcgaagttttacataa-----TTAACA--------------C----ATTTAGTGCAA-CTT--CTGGT-TTATC---------AGTTGAATGGAGATTCAA-A-GT-GTGGT-TTAGCAA-AAAGGAGGTAAAACAAGGGCGGAGAGGTGGAAAAAGA---CC--GCAAATAAAAAACAGT----------A--------AT--------A---TCTACCCTAATCTGATCCCTCACATCTAATTGTTATGGCTCGTATGTAACAGC-ATTCCAAGAATTTGGAGG-AAGAATCATTTTCAT--ATGCCAt
gi|9 : atcc-A-TGTCATC-AAATTTATTTTCTT---A---AATATGCTGGAGAA---A-A-----CCCGATCAAA---------A-T--CGGTG-----------CTA---------------AAA-----TTC--------------------------ccaagccaatgag
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATCCGTGCAATAATTCCCGCGATAATTTTATTGAAACACCTCAGTTTGCACCTGCTAAAATGATTGATATCCTTCTCAGTGCAACTTCCGGTTTATAATAC
Unaligned ( gi|20 ): TTATGATATGAATAGTAATGCTGGGGTGGATTTCTTTTACTTTGAATTTAGCTACAGTAATGGCTGATCAGAAAAAAAAATATTAGGACAGATAAGAAAT
Unaligned ( gi|27 ): TTAAATGCAATCGCAGTAAATGAGGTCATAAGTGTGTTTACA
Alignments
lowQualScore : 11111111111111111111111111111111111 1111111111111111111111111 1111111111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333 33333333333333333333333333333333333 111 111 111111 1 33333333333333333 11 1 1 11 11 11 1 1 1 1 222 1 1 1 1 1 22 4444444444 333333333333333333333 1 0000000000000000000000000 1 1 11 1 44444444 1 8888888888888888 1 11 1 1 1 1 3333333333333333333333333 1 1 11 1 1 1 1 1 1 1 1 11 1 11 1 2 111 111 1 1 11111111 11111 33333333333333333333333 7777777777777777777777777777777777777777777777777777 111111111111111111111111111111111111111111111111111111 1 111111111111111111 11111111 555555555555555555555555555555555555555555 11111111 111111 11111 111111 11 3333333 11 444444444444444444444444 1 11
lowQualScore : 1 6 666666 0000000000 99999999999999999999999999999999999 111 6 6 000 6 999999 0 0 8 0 11111111111111111 11 8 0 3 0 0 0 00 33 33 2 2 9 2 0 0 5 5 3 3 333 6 6 7 6 3 6 7 3 0 3 3 6 7 6 1 5 55 2 3333333333 111111111111111111111 0 0000000000000000000000000 5 0 3 66 0 88888888 3 1111111111111111 6 3 88 6 3 7 7 3 3 3 7 3333333333333333333333333 7 3 6 2 3 0 33 0 3 7 3 7 3 7 3 7 6 7 6 3 3 7 7 3 6 6 7 88 3 88 3 7 3 999 33 33 333 0 1 4 4 4 77777777 777 4 11111 33333333333333333333333 8 66 5555555555555555555555555555555555555555555555555555 777 4 66 000000000000000000000000000000000000000000000000000000 7 55 4 777777777777777777 3 7 55 55 1 3 3 3 55555555 0 99999 7 4 2 0 000000000000000000000000000000000000000000 44444444 777 000000 55 7777 3 777 1 4 4 66 4 66 55555 1 66 111111 1 22 0 55 0 3333333 4 8 4 6 66 66 888 77 555555555555555555555555 5 6 6 00 3
lowQualScore : . . ...... .......... ................................... ... . . ... . ...... . . . . ................. .. . . . . . . .. .. .. . . . . . . . . . . ... . . . . . . . . . . . . . . . . .. . .......... ..................... . ......................... . . . .. . ........ . ................ . . .. . . . . . . . . ......................... . . . . . . .. . . . . . . . . . . . . . . . . . . . . .. . .. . . . ... .. .. ... . . . . . ........ ... . ..... ....................... . .. .................................................... ... . .. ...................................................... . .. . .................. . . .. .. . . . . ........ . ..... . . . . .......................................... ........ ... ...... .. .... . ... . . . .. . .. ..... . .. ...... . .. . .. . ....... . . . . .. .. ... .. ........................ . . . .. .
lowQualScore : 0 7 555555 5555555555 88888888888888888888888888888888888 777 7 7 888 7 222222 0 8 0 6 44444444444444444 00 0 8 2 0 8 0 66 88 88 5 5 2 5 0 0 0 5 2 2 333 7 7 3 7 3 7 3 3 7 3 3 7 3 7 0 5 00 5 8888888888 888888888888888888888 0 0000000000000000000000000 0 0 2 00 0 33333333 3 7777777777777777 7 3 33 7 3 3 3 3 3 3 3 3333333333333333333333333 3 3 7 5 2 0 88 0 3 3 3 3 3 3 3 3 7 3 7 3 3 3 3 3 7 7 3 33 3 33 3 3 7 000 55 55 888 0 4 4 4 4 66666666 888 4 11111 22222222222222222222222 9 11 6666666666666666666666666666666666666666666666666666 000 0 99 666666666666666666666666666666666666666666666666666666 3 00 5 000000000000000000 3 4 00 55 0 6 6 6 77777777 6 11111 5 0 5 5 666666666666666666666666666666666666666666 55555555 000 555555 00 3333 6 888 9 4 4 11 4 11 66666 1 44 222222 7 22 7 11 1 1111111 1 9 4 2 11 99 888 55 333333333333333333333333 5 7 7 77 2
consensus : ATGCCGGNTTATC-ATTAT--GGA----ATACCATGTTATTTCATGCATATAGT-----------------TTAAT-----AA------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCTTCTNTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGCTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACGTCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCNAGTTAATGCC-GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTNCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACANGTCTTGCGNCCNCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTA-A-TATCATC-AAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TGC-----------A--TA-------T-----TCAAAA--------------T----TCTCAGTGCAA-TTT--C-GGTGTTA--A-----------GTT-AATGACG--TCAC-ANGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAGGA---C---GC-------------T----------T--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--CAA-AATT--TGAGGG-AAGAATCAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCNGGGATGGA-TT-GTTTTGACTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
Reference ( family-1601 ) : ATGCCGGNTTATC-ATTAT--GGA----ATACCATGTTATTTCATGCATATAGT-----------------TTAAT-----GA------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCTTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGCTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACGTCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCNAGTTAATGCC-GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTNCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTCTTTGTCAGACANGTCTTGCGNCCNCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTA-A-TATCATC-AAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TGC-----------A--TA-------T-----TCAAAA--------------T----TCTCAGTGCAA-TTT--C-GGTGTTA--A-----------GTT-AATGACG--TCAC-ANGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAGGA---C---GC-------------T----------T--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--CAA-AATT--TGAGGG-AAGAATCAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCNGGGATGGA-TT-GTTTTGACTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
gi|1 : ATGC-GGTTTATC-ATTAT--GGAT---AAACCATGTTATTTCATGCATATAGCCATGGATATAGACTTAGTTAATCAGGTAA------AAGAACGACAACTC---GT-A-AAGTTAT---CAT-A------CACCCCCTTCT-TATTTAAAAACAAACTACAAT------AATC-------CCCCC--TTCTTATCGCTTCCGAG-CATGCG-CGTCATCA-CTTCCTTTCTGCCTCGG--ATCCAATCTTGATACA--CGGAAAAAATTATCGGAGTGATCAAATCT-GCCAAACATCGACTCTGTCTTCACGAAAT-AAGCT--TTAAGCTTCATAGAAAAA--TGCCAGAGGGCTAAAAAATTTC-AACGGG----CTTCCAAAGTCAATAA-GCCCGTAATCTA-CACAAGCCGGCCTCCCGACGTGTGTCTTCAAAGTGTATTTAG-TCGGGGGAGAACTGACCA-GATGTCGGACATGCGGTCACGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATGATCCACTATCACTGCAGTCAACACAAGCATATGCAGAA-CTATTCAAGAGA-TCAACATGC----AGCCATACCCTTTGTCCCAGTTAATGCCGGGCGCCGATCTCGGA-C----------CGGA------AAC-----GA-----ATCAGATGCCCAACTTCCCGACATCAATCAATCAAGGT-ACGAGTGCTTAGTTTCGATTTATGTACCCTAGCCCATTTAATAGTTTG-ACCTCTCCATTAGGACGCTCATGTATCCCAGATTGTTCATTGAATAGAGTTATTTCTTTCAGGACCATTGTTCTGAAAAT-CAAAATCAAATTATCTTTGTAAGGGGGTGTTTTTTCTTAT--CAAGCCTAGAATAAAGAAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACC-TGCAAAAGGCACCCATTAC-AAGCCATTCCTCTTGATATACGATATATTTAGAGGGGCATCCAG-GAATAGTGTAGGGAGGTTGGAGTTGGGACTATTGAATGTGCAAATCC-AATTCCGATTAAAAAAGTCGGT-CGATGCCTCC-TAAGCTGGGGTTC-ATTGATTCCGAGCTTT-GGTTTGTTTTATATGCAAGCCAGCAACAACAAATCTCTGCAAACGAGTCC-TTCTAACCGAGAAGTGTTATGAC-ACAATTATTGAAGGCGGTTT-----GCAGAAACAATATTGCAAGTA-TTTGCACCAAGGCATTA-ATTGT--GTAATAAACCCCA-CCATCAATGAACTGTTCAAAAATCTA-TTCAG-TCTTCTCAAGGGGAAATCATGCACCTGACAG-CTATAAAATCAG-CTCTTAGAAGCAAGCCATAG--CTGAACATATTCAAGTAAAGTTATAAACCAAATTATTCAGGCATTTATTAATTTTAGTTTACAG-TTTCTCTTTGTCAGATAA--CTTGTGGCCA---------CCCCCCCCCCTTCCTTGGTCTTAGCTTTTAGACTGCCGAGGTTA-A-TATCATT-AAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAA-------------A---------ATT--CTGTG-----------CAG---------------CAATT---T--------------TC---AG-TTTTCACG--GGC-----------A--TAT------T-----TTAAAAACCGACCCATATCCT----TCTCAGTGCAA-TTT--C-TGTG-TA--A-----------GTT-AATGACG--TCAC-ACGT-GTG-TGTTACTAC-TTGGGAGTTAAA-----GGTCAAGAG-TGGAAAAGGAC--C---GC-------------T----------G--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--C-A-AATT--TGA-GC-AAGAATCAT-TT--AC--ATGCCATGATACTAAT--AAGCCATGA-TACTAA-TAAATCCAGGGATGGATTT-GTTTTGGCTTGAACA--TAGCT--AGATTCAA---CTGCACCGGCAG------TGC---------------TTGGGATAG-ATCA-GAAAT-CTGCAAC--TACTTT-AACTGTA
gi|10 : ATGCCGGTTTATC-A--------------------ATTATTTCATGCATATAGTC----------------TTAATAATTGGA------AATAACGACAACTC---TT-ACAAG-TAA--TCAT-ACATCACCACCCCCTTTCTTATTTAGAA-CAAA-------------------------------T-CTTATCGCTTCCGA-GCATGC-GCGTCATCCACTTCCTTTCCGCATCA-GCATCCAAaact
gi|11 : GTAA--A-----------ATT-AATGAGG--TCAT-AAGT-GTG-T-TTACAAC-TTA----------------C--AGAG-TGGAAGAGGA---C----C-------------C----------T--------ATTTACCACGA---T------AATGCTGATTGCCTG--TCAAAT-A--ATGATTCGT---TAACA-C-AT--CAA-GATTACTGATAG-TGAAACCGT-TT--g
gi|12 : aaatgaaaaCTTTGTCCCAGTTAATGCC-GGCGCCGATCTCGGACCGGAAACGAATCAGATGCCACAACTTCCTGATATCAATC-AAT-------------------------CAAGGT-ACGAGTGC-TAATTTCGATTTATGTACCCTTGTCCATTT-ATAGTTTG-ACCTCTCCATTAGGA-GCTCATGcgctttgaacttagctgca
gi|13 : -AAGCTA-ACTATGATC-AAACTTATTTTTTT---TTTTAATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------TAAT----T--------------TC---AG-
gi|14 : taaagttaaactaccgaggttttacataa-AAGCTA-A-TATGATC-AAACTTATTTTTTTTTTA---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------TAAT----T--------------TC---AG-agataatcttactcaa
gi|15 : ttaaagttaaactaccgaggttttacataaTGATCCCTCG--TCAAAT-A--ACGGCTTGT---TAGCT-C-AT--CAA-AATT--TGA-GA-AAGAATCAA-TT--CC--ATGTTATGATACAAAT---------------CAAT------CTGGGATGGA-TT-A-TTTGACTTGAACA--TAGCT--AGATTCAA---CTGCagataatcttactcaa
gi|16 : C-----------A--TA-------T-----CC------------------T----TCTCAGTGCAA-TTT--CTGGTG-TA--A-----------GTT-AATGACG--TCAC-ATGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAAGA---CGCTGC-------------T----------T--------AT--------A---T------T
gi|17 : attttaaagcggccGTGCAA-TTT--CTGGT-TTA--A-----------GTA-AATTATG--TCAT-AAGT-GTG-T-TTACAAC-GTAAGAGTTAAA-----GGCGGAGAG-TGGAAAAAGATTCT---GC-------------T----------T--------AC--------AGCGT------TA----AATCTCTCG--TCAAAT-
gi|18 : ATGA-TACTAAT-AAATGCTGGGATAGA-TT-GTTTTGACTTGAACA--TGGCT--AGATTCAA---CTGCAC
gi|19 : tTG-----------AAA---------------CAC-----C--------------TC---AG-TTTGCACC--TGCTAAAATGATTGA--TA-------T-----CC------------------T----TCTCAGTGCAACTTC--C-GGT-TTA----------------T-AATtttacataactgctcagaaaaaaaatattgggatagataaa
gi|2 : atccgtgcaataattcccgcgataattttatATGCCGGGTTATC-ATT-T--GGA----ATACCATGTTATTTCATGCATATAGT----------------------------A------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCCTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATC--ATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGTTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACATCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCAAGTTA-TGC--GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTCCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACACGTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGTTA-A-TATCATT-GAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAA-------------A---------A-T--CTGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TCC-----------A---A-------T-----TTAAAA--------------T----TCTCAGTGCTA-TTT--C-GGTGTTA--A-----------GTT-TATGA-G--TC-C-ACGT-GTG-T-TTACTAC--TGGGAGTTAAA-----GGTCAAGAG-T-GAAAAGGA---C---GC-------------T----------C--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-C--ATGGC-TGT---TAGCA-C-AT--CAA-AATT--TGAGGGCAAGGAACAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCAGTGATGGA-TT-GTTTTG-CTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATACac
gi|21 : GGGTTATCCACTATTTGGA-----TAAC-TGTTATT-CATGCATATAGTGC---------------TTAGT-----AATAGGTAAAGAACGACAACTC---TTAA-AAGTTATCATCAT-A------
gi|22 : tAGCCCTGAATAGTAATT-------GGGGTGGA-TT-GTTTTGACTTAAACA--TAGCT--A----CAA-------AAG----G------TGC---------------T----A-AAAA--A-GAAAT-CTGCAAC--TACTTTGAACTGTACAtca
gi|23 : ------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTCT---TATCA-C-AT--CAC-AATA--TG-GGG-AAGAATCA---T--ACCAATGCTATGATACTAATA
gi|24 : TGTCAGATAA--CTTGTGGCCACCCCCC-------------TTCT-TGGCCTTAGCTTTTAGACTGCCGAGGTTA-A-
gi|25 : AAA-----GGCGGAGAG-TGGAAAAAGA---C---GC-------------T-------------------AT--------A---T------TATTCTGATCCCTCA--TCAAAT-G--ATGG
gi|26 : ATGCCTCCGTAAGCTTGGGTTCTATTGATTCGGAGCTTTGG--TTG-TT
gi|27 : --A-----------GTA-AATGAGG--TCAT-AAGT-GTG-T-TTAC
gi|28 : ttaaatgcaatcgcCTGGGATGGA-TT-GTTTTGACTTGAACA--TGGa
gi|3 : tgATGCCGGGTTATC-ATT-T--GGA----ATACCATGTTATTTCATGCATATAGT----------------------------A------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCCTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATC--ATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGTTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACATCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCAAGTTA-TGC--GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTCCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACACGTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGTTA-A-TATCATT-GAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAA-------------A---------A-T--CTGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TCC-----------A---A-------T-----TTAAAA--------------T----TCTCAGTGCTA-TTT--C-GGTGTTA--A-----------GTT-TATGA-G--TC-C-ACGT-GTG-T-TTACTAC--TGGGAGTTAAA-----GGTCAAGAG-T-GAAAAGGA---C---GC-------------T----------C--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-C--ATGGC-TGT---TAGCA-C-AT--CAA-AATT--TGAGGGCAAGGAACAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCAGTGATGGA-TT-GTTTTG-CTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
gi|4 : CTAGA-TGTCATCCAAACT-ATTTTT---------AGTATCT--GTGAA---A-A-----CC-GATCAA-------------ACGTTGCGTAA-TTCCCGGGATAATTCTATTCAAA--------------CAC-----C--------------TC---AG-TTATCACC--TGT-----------A--TA-------AGCGGATCGATA--------------TCTT-TCTAAATTCAA-CTTTCC-AGT-TTA--A-----------GTT-AATGAC---TCATTAAGTTGCG-T-TTAC---------------A-----GGT-AGGAA-TGGAAAAAGA---C---GC-------------TGTGTATCAACT--------AT--------A---T------TATTCTGATCCCACG--TTCAAT-G--A-GGCCTGT---TA-CA-CGAT--CA---------------AAGAATTATATT--CA--ATGCTATGATACTAATA------GTAA-TGCT------------GGGTGGATTT-GTTTT-AC-TGAACATGTAG-T--AGATTCAA---CTGCAC-TGTAGC-----TGCTCAGAAATAGAAATATTGGGATAG-ATCAGGAAATCCTGCAACTATCTTTCAAAAT-TACAT
gi|5 : tttactataa-AAACTTATTTCCTT---A---AACATGCTGGTGAACACACA-----CCCGATCAAAATCCGTGCAATTA---------A-T--TCCTG-----------AGA---------------TAA-----TCGTATTCAAACACCTC---AG-TCTTCACC--TGC-----------A--TA-------AGCGA-TCGATA--------------TCCT-TCTAAGTGCAA-CTT--CCGGT-TTA--AATGCAATCGCAGTA-AATGACG--TCAT-AAGT-GTG-T-TTAC--------------AA-------CGAAGAC---------GC---T---GC-------------T----------TTTATCACGAT--------A---T------TATTCTTACCCCTCG--TCAAAT-G--ATGGCTTGG---TAGCA-C-AT--CAA-GATT--TGA-GG-AAGA-------------------ATGATAC---TAAAAGTAATG---------------CTGTGGTGGA-TTCGTTTTGCCTTGAACT--AAGCTACATATTCAAGTTCTGCAC-TGTAGAAAAAATAA---------------ATGGTATAG-ATCA-GAAAT-CTNGAACTTta
gi|6 : acacacaagctatTGCCGGTTTATC-AATAT--GGATGAAATA---TGTTATCTCAAGGAT-TAGG-----------------T----------A------CAGAATGATAAATAAAAGT-A-A--TTAT--CCACCA------CACACCTTTTTTTAT--AAAA-CAAACGACAATTCTTATAATCAGTAACACTTCCATT-CTT-TCCCCTTTGGAGCATGCG-TGTTATTAACTTT-TTTCTGCCTCAG-CATCCAACCTTGACACAGACAGAAAA--TTATCG-AGT-ATCCAATCTGGC-AA-CATCGACTTTGTTT-CATAGAAT-AATCT-TTCAAGC-TCATTGGAAAAAATGCagctacatattcaagttctg
gi|7 : c-AAGCTA-A-TATGATT-AAGCTTATTTTTTA---T---AAAATGTTGGTGGA---A-ATGGCACCCGATCAA-------------A---------AAT--CCGTGAGTAATTT---CAGAGAATAACGTTCTTTCAAAACACC--------------TC---AG-TTTTCACG--TGC-----------A--TAAAGCGGTT-----CCCAAA--------------TATCCTTTCA-TGCAA-TAT--C-TGTGT-A--A-----------GTT-AATGACG--TCAC-ACGT-GTG-T-TTACTACTTTAGGAGTTAAA-----Gt
gi|8 : ttaagaataaactagcgaagttttacataaTTAGTGCAA-CTT--CTGGT-TTATCA-----------GTTGAATGGAGATTCA--AAGT-GTGGT-TTAGCAA-AAAGGAGGTAAAACAAGGGCGGAGAGGTGGAAAAAGA---CC--GCAAATAAAAAACAGT----------A--------AT--------A---TCTACCCTAATCTGATCCCTCACATCTAATTGTTATGGCTCGTATGTAACAGC-ATTCCAAGAATT--TGGAGG-AAGAATCAT-TTTCAT--ATGCCAt
gi|9 : atccttaacacat-A-TGTCATC-AAATTTATTTTCTT---A---AATATGCTGGAGAA---A-A-----CCCGATCAA-------------A---------A-T--CGGTG-----------CTA---------------AAA-----T--------------TCCGGAGATTCTC-TGTTTGC-----------ACGTA-------T-----GCAAAAACCATTGATATCC-T----TCAAAGTGCAACCTT--C-GGTccaagccaatgag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATGATATGAATAGTAATGCTGGGGTGGATTTCTTTTACTTTGAATTTAGCTACAGTAATGGCTGATCAGAAAAAAAAATATTAGGACAGATAAGAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111 1111111111111111111111111 1111111111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333 3333333333333333333333333333333333333333 111 111 111111 33333333333333333 11 1 1 11 11 11 1 1 1 1 222 1 1 1 1 1 22 4444444444 333333333333333333333 1 0000000000000000000000000 1 1 11 1 44444444 1 8888888888888888 1 11 1 1 1 1 3333333333333333333333333 1 1 11 1 1 1 1 1 1 1 1 11 1 11 1 1 111 111 1 1 11111111 11111 33333333333333333333333 7777777777777777777777777777777777777777777777777777 111111111111111111111111111111111111111111111111111111 1 111111111111111111 11111111 555555555555555555555555555555555555555555 11111111 111111 11111 111111 11 3333333 11 444444444444444444444444 1 11
lowQualScore : 1 6 666666 0000000000 5555555555555555555555555555555555555555 111 6 6 000 6 999999 8 0 8 0 11111111111111111 11 8 0 3 0 0 0 00 33 33 2 2 9 2 0 0 5 5 3 3 333 6 6 7 6 3 6 7 3 0 3 3 6 7 6 1 5 55 2 3333333333 111111111111111111111 0 0000000000000000000000000 5 0 3 66 0 88888888 3 1111111111111111 6 3 88 6 3 7 7 3 3 3 7 3333333333333333333333333 7 3 6 2 3 0 33 0 3 7 3 7 3 7 3 7 6 7 6 3 3 7 7 3 6 6 7 88 3 88 3 7 3 999 33 33 333 0 1 4 4 4 77777777 777 4 11111 33333333333333333333333 8 66 5555555555555555555555555555555555555555555555555555 777 4 66 000000000000000000000000000000000000000000000000000000 7 55 4 777777777777777777 3 7 55 55 1 3 3 3 55555555 0 99999 7 4 2 0 000000000000000000000000000000000000000000 44444444 777 000000 55 7777 3 777 1 4 4 66 4 66 55555 1 66 111111 1 22 0 55 0 3333333 4 8 4 6 66 66 888 77 555555555555555555555555 5 6 6 00 3
lowQualScore : . . ...... .......... ........................................ ... . . ... . ...... . . . . ................. .. . . . . . . .. .. .. . . . . . . . . . . ... . . . . . . . . . . . . . . . . .. . .......... ..................... . ......................... . . . .. . ........ . ................ . . .. . . . . . . . . ......................... . . . . . . .. . . . . . . . . . . . . . . . . . . . . .. . .. . . . ... .. .. ... . . . . . ........ ... . ..... ....................... . .. .................................................... ... . .. ...................................................... . .. . .................. . . .. .. . . . . ........ . ..... . . . . .......................................... ........ ... ...... .. .... . ... . . . .. . .. ..... . .. ...... . .. . .. . ....... . . . . .. .. ... .. ........................ . . . .. .
lowQualScore : 0 7 555555 5555555555 0000000000000000000000000000000000000000 777 7 7 888 7 222222 8 8 0 6 44444444444444444 00 0 8 2 0 8 0 66 88 88 5 5 2 5 0 0 0 5 2 2 333 7 7 3 7 3 7 3 3 7 3 3 7 3 7 0 5 00 5 8888888888 888888888888888888888 0 0000000000000000000000000 0 0 2 00 0 33333333 3 7777777777777777 7 3 33 7 3 3 3 3 3 3 3 3333333333333333333333333 3 3 7 5 2 0 88 0 3 3 3 3 3 3 3 3 7 3 7 3 3 3 3 3 7 7 3 33 3 33 3 3 3 000 55 55 888 0 4 4 4 4 66666666 888 4 11111 22222222222222222222222 9 11 6666666666666666666666666666666666666666666666666666 000 0 99 666666666666666666666666666666666666666666666666666666 3 00 5 000000000000000000 3 4 00 55 0 6 6 6 77777777 6 11111 5 0 5 5 666666666666666666666666666666666666666666 55555555 000 555555 00 3333 6 888 9 4 4 11 4 11 66666 1 44 222222 7 22 7 11 1 1111111 1 9 4 2 11 99 888 55 333333333333333333333333 5 7 7 77 2
consensus : ATGCCGGNTTATC-ATTAT--GGA----ATACCATGTTATTTCATGCATATAGT-----------------TTAAT-----A-----A------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCTTCTNTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGCTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACGTCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCNAGTTAATGCC-GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTNCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACANGTCTTGCGNCCNCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTA-A-TATCATC-AAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TGC-----------A--TA-------T-----TCAAAA--------------T----TCTCAGTGCAA-TTT--C-GGTGTTA--A-----------GTT-AATGACG--TCAC-ANGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAGGA---C---GC-------------T----------T--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--CAA-AATT--TGAGGG-AAGAATCAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCNGGGATGGA-TT-GTTTTGACTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
Reference ( family-1601 ) : ATGCCGGNTTATC-ATTAT--GGA----ATACCATGTTATTTCATGCATATAGT-----------------TTAAT-----A-----A------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCTTCTNTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGCTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACGTCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCNAGTTAATGCC-GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTNCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACANGTCTTGCGNCCNCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTA-A-TATCATC-AAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TGC-----------A--TA-------T-----TCAAAA--------------T----TCTCAGTGCAA-TTT--C-GGTGTTA--A-----------GTT-AATGACG--TCAC-ANGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAGGA---C---GC-------------T----------T--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--CAA-AATT--TGAGGG-AAGAATCAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCNGGGATGGA-TT-GTTTTGACTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
gi|1 : ATGC-GGTTTATC-ATTAT--GGAT---AAACCATGTTATTTCATGCATATAGCCATGGATATAGACTTAGTTAATCAGGTA-----A------AAGAACGACAACTC---GT-A-AAGTTAT---CAT-A------CACCCCCTTCT-TATTTAAAAACAAACTACAAT------AATC-------CCCCC--TTCTTATCGCTTCCGAG-CATGCG-CGTCATCA-CTTCCTTTCTGCCTCGG--ATCCAATCTTGATACA--CGGAAAAAATTATCGGAGTGATCAAATCT-GCCAAACATCGACTCTGTCTTCACGAAAT-AAGCT--TTAAGCTTCATAGAAAAA--TGCCAGAGGGCTAAAAAATTTC-AACGGG----CTTCCAAAGTCAATAA-GCCCGTAATCTA-CACAAGCCGGCCTCCCGACGTGTGTCTTCAAAGTGTATTTAG-TCGGGGGAGAACTGACCA-GATGTCGGACATGCGGTCACGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATGATCCACTATCACTGCAGTCAACACAAGCATATGCAGAA-CTATTCAAGAGA-TCAACATGC----AGCCATACCCTTTGTCCCAGTTAATGCCGGGCGCCGATCTCGGA-C----------CGGA------AAC-----GA-----ATCAGATGCCCAACTTCCCGACATCAATCAATCAAGGT-ACGAGTGCTTAGTTTCGATTTATGTACCCTAGCCCATTTAATAGTTTG-ACCTCTCCATTAGGACGCTCATGTATCCCAGATTGTTCATTGAATAGAGTTATTTCTTTCAGGACCATTGTTCTGAAAAT-CAAAATCAAATTATCTTTGTAAGGGGGTGTTTTTTCTTAT--CAAGCCTAGAATAAAGAAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACC-TGCAAAAGGCACCCATTAC-AAGCCATTCCTCTTGATATACGATATATTTAGAGGGGCATCCAG-GAATAGTGTAGGGAGGTTGGAGTTGGGACTATTGAATGTGCAAATCC-AATTCCGATTAAAAAAGTCGGT-CGATGCCTCC-TAAGCTGGGGTTC-ATTGATTCCGAGCTTT-GGTTTGTTTTATATGCAAGCCAGCAACAACAAATCTCTGCAAACGAGTCC-TTCTAACCGAGAAGTGTTATGAC-ACAATTATTGAAGGCGGTTT-----GCAGAAACAATATTGCAAGTA-TTTGCACCAAGGCATTA-ATTGT--GTAATAAACCCCA-CCATCAATGAACTGTTCAAAAATCTA-TTCAG-TCTTCTCAAGGGGAAATCATGCACCTGACAG-CTATAAAATCAG-CTCTTAGAAGCAAGCCATAG--CTGAACATATTCAAGTAAAGTTATAAACCAAATTATTCAGGCATTTATTAATTTTAGTTTACAG-TTTCTCTTTGTCAGATAA--CTTGTGGCCA---------CCCCCCCCCCTTCCTTGGTCTTAGCTTTTAGACTGCCGAGGTTA-A-TATCATT-AAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAA-------------A---------ATT--CTGTG-----------CAG---------------CAATT---T--------------TC---AG-TTTTCACG--GGC-----------A--TAT------T-----TTAAAAACCGACCCATATCCT----TCTCAGTGCAA-TTT--C-TGTG-TA--A-----------GTT-AATGACG--TCAC-ACGT-GTG-TGTTACTAC-TTGGGAGTTAAA-----GGTCAAGAG-TGGAAAAGGAC--C---GC-------------T----------G--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--C-A-AATT--TGA-GC-AAGAATCAT-TT--AC--ATGCCATGATACTAAT--AAGCCATGA-TACTAA-TAAATCCAGGGATGGATTT-GTTTTGGCTTGAACA--TAGCT--AGATTCAA---CTGCACCGGCAG------TGC---------------TTGGGATAG-ATCA-GAAAT-CTGCAAC--TACTTT-AACTGTA
gi|10 : ATGCCGGTTTATC-A--------------------ATTATTTCATGCATATAGTC----------------TTAAT-----AATTGGA------AATAACGACAACTC---TT-ACAAG-TAA--TCAT-ACATCACCACCCCCTTTCTTATTTAGAA-CAAA-------------------------------T-CTTATCGCTTCCGA-GCATGC-GCGTCATCCACTTCCTTTCCGCATCA-GCATCCAAaact
gi|11 : GTAA--A-----------ATT-AATGAGG--TCAT-AAGT-GTG-T-TTACAAC-TTA----------------C--AGAG-TGGAAGAGGA---C----C-------------C----------T--------ATTTACCACGA---T------AATGCTGATTGCCTG--TCAAAT-A--ATGATTCGT---TAACA-C-AT--CAA-GATTACTGATAG-TGAAACCGT-TT--g
gi|12 : aaatgaaaaCTTTGTCCCAGTTAATGCC-GGCGCCGATCTCGGACCGGAAACGAATCAGATGCCACAACTTCCTGATATCAATC-AAT-------------------------CAAGGT-ACGAGTGC-TAATTTCGATTTATGTACCCTTGTCCATTT-ATAGTTTG-ACCTCTCCATTAGGA-GCTCATGcgctttgaacttagctgca
gi|13 : -AAGCTA-ACTATGATC-AAACTTATTTTTTT---TTTTAATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------TAAT----T--------------TC---AG-
gi|14 : taaagttaaactaccgaggttttacataa-AAGCTA-A-TATGATC-AAACTTATTTTTTTTTTA---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------TAAT----T--------------TC---AG-agataatcttactcaa
gi|15 : ttaaagttaaactaccgaggttttacataaTGATCCCTCG--TCAAAT-A--ACGGCTTGT---TAGCT-C-AT--CAA-AATT--TGA-GA-AAGAATCAA-TT--CC--ATGTTATGATACAAAT---------------CAAT------CTGGGATGGA-TT-A-TTTGACTTGAACA--TAGCT--AGATTCAA---CTGCagataatcttactcaa
gi|16 : C-----------A--TA-------T-----CC------------------T----TCTCAGTGCAA-TTT--CTGGTG-TA--A-----------GTT-AATGACG--TCAC-ATGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAAGA---CGCTGC-------------T----------T--------AT--------A---T------T
gi|17 : attttaaagcggccGTGCAA-TTT--CTGGT-TTA--A-----------GTA-AATTATG--TCAT-AAGT-GTG-T-TTACAAC-GTAAGAGTTAAA-----GGCGGAGAG-TGGAAAAAGATTCT---GC-------------T----------T--------AC--------AGCGT------TA----AATCTCTCG--TCAAAT-
gi|18 : ATGA-TACTAAT-AAATGCTGGGATAGA-TT-GTTTTGACTTGAACA--TGGCT--AGATTCAA---CTGCAC
gi|19 : tTG-----------AAA---------------CAC-----C--------------TC---AG-TTTGCACC--TGCTAAAATGATTGA--TA-------T-----CC------------------T----TCTCAGTGCAACTTC--C-GGT-TTA----------------T-AATtttacataactgctcagaaaaaaaatattgggatagataaa
gi|2 : atccgtgcaataattcccgcgataattttatATGCCGGGTTATC-ATT-T--GGA----ATACCATGTTATTTCATGCATATAGT---------------------------------A------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCCTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATC--ATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGTTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACATCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCAAGTTA-TGC--GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTCCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACACGTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGTTA-A-TATCATT-GAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAA-------------A---------A-T--CTGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TCC-----------A---A-------T-----TTAAAA--------------T----TCTCAGTGCTA-TTT--C-GGTGTTA--A-----------GTT-TATGA-G--TC-C-ACGT-GTG-T-TTACTAC--TGGGAGTTAAA-----GGTCAAGAG-T-GAAAAGGA---C---GC-------------T----------C--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-C--ATGGC-TGT---TAGCA-C-AT--CAA-AATT--TGAGGGCAAGGAACAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCAGTGATGGA-TT-GTTTTG-CTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATACac
gi|21 : GGGTTATCCACTATTTGGA-----TAAC-TGTTATT-CATGCATATAGTGC---------------TTAGT-----A-----ATAGGTAAAGAACGACAACTC---TTAA-AAGTTATCATCAT-A------
gi|22 : tAGCCCTGAATAGTAATT-------GGGGTGGA-TT-GTTTTGACTTAAACA--TAGCT--A----CAA-------AAG----G------TGC---------------T----A-AAAA--A-GAAAT-CTGCAAC--TACTTTGAACTGTACAtca
gi|23 : ------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTCT---TATCA-C-AT--CAC-AATA--TG-GGG-AAGAATCA---T--ACCAATGCTATGATACTAATA
gi|24 : TGTCAGATAA--CTTGTGGCCACCCCCC-------------TTCT-TGGCCTTAGCTTTTAGACTGCCGAGGTTA-A-
gi|25 : AAA-----GGCGGAGAG-TGGAAAAAGA---C---GC-------------T-------------------AT--------A---T------TATTCTGATCCCTCA--TCAAAT-G--ATGG
gi|26 : ATGCCTCCGTAAGCTTGGGTTCTATTGATTCGGAGCTTTGG--TTG-TT
gi|27 : --A-----------GTA-AATGAGG--TCAT-AAGT-GTG-T-TTAC
gi|28 : ttaaatgcaatcgcCTGGGATGGA-TT-GTTTTGACTTGAACA--TGGa
gi|3 : tgATGCCGGGTTATC-ATT-T--GGA----ATACCATGTTATTTCATGCATATAGT---------------------------------A------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCCTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATC--ATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGTTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACATCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCAAGTTA-TGC--GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTCCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACACGTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGTTA-A-TATCATT-GAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAA-------------A---------A-T--CTGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TCC-----------A---A-------T-----TTAAAA--------------T----TCTCAGTGCTA-TTT--C-GGTGTTA--A-----------GTT-TATGA-G--TC-C-ACGT-GTG-T-TTACTAC--TGGGAGTTAAA-----GGTCAAGAG-T-GAAAAGGA---C---GC-------------T----------C--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-C--ATGGC-TGT---TAGCA-C-AT--CAA-AATT--TGAGGGCAAGGAACAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCAGTGATGGA-TT-GTTTTG-CTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
gi|4 : CTAGA-TGTCATCCAAACT-ATTTTT---------AGTATCT--GTGAA---A-A-----CC-GATCAA-------------ACGTTGCGTAA-TTCCCGGGATAATTCTATTCAAA--------------CAC-----C--------------TC---AG-TTATCACC--TGT-----------A--TA-------AGCGGATCGATA--------------TCTT-TCTAAATTCAA-CTTTCC-AGT-TTA--A-----------GTT-AATGAC---TCATTAAGTTGCG-T-TTAC---------------A-----GGT-AGGAA-TGGAAAAAGA---C---GC-------------TGTGTATCAACT--------AT--------A---T------TATTCTGATCCCACG--TTCAAT-G--A-GGCCTGT---TA-CA-CGAT--CA---------------AAGAATTATATT--CA--ATGCTATGATACTAATA------GTAA-TGCT------------GGGTGGATTT-GTTTT-AC-TGAACATGTAG-T--AGATTCAA---CTGCAC-TGTAGC-----TGCTCAGAAATAGAAATATTGGGATAG-ATCAGGAAATCCTGCAACTATCTTTCAAAAT-TACAT
gi|5 : tttactataa-AAACTTATTTCCTT---A---AACATGCTGGTGAACACACA-----CCCGATCAAAATCCGTGCAATTA---------A-T--TCCTG-----------AGA---------------TAA-----TCGTATTCAAACACCTC---AG-TCTTCACC--TGC-----------A--TA-------AGCGA-TCGATA--------------TCCT-TCTAAGTGCAA-CTT--CCGGT-TTA--AATGCAATCGCAGTA-AATGACG--TCAT-AAGT-GTG-T-TTAC--------------AA-------CGAAGAC---------GC---T---GC-------------T----------TTTATCACGAT--------A---T------TATTCTTACCCCTCG--TCAAAT-G--ATGGCTTGG---TAGCA-C-AT--CAA-GATT--TGA-GG-AAGA-------------------ATGATAC---TAAAAGTAATG---------------CTGTGGTGGA-TTCGTTTTGCCTTGAACT--AAGCTACATATTCAAGTTCTGCAC-TGTAGAAAAAATAA---------------ATGGTATAG-ATCA-GAAAT-CTNGAACTTta
gi|6 : acacacaagctatTGCCGGTTTATC-AATAT--GGATGAAATA---TGTTATCTCAAGGAT-TAGG-----------------T---------------A------CAGAATGATAAATAAAAGT-A-A--TTAT--CCACCA------CACACCTTTTTTTAT--AAAA-CAAACGACAATTCTTATAATCAGTAACACTTCCATT-CTT-TCCCCTTTGGAGCATGCG-TGTTATTAACTTT-TTTCTGCCTCAG-CATCCAACCTTGACACAGACAGAAAA--TTATCG-AGT-ATCCAATCTGGC-AA-CATCGACTTTGTTT-CATAGAAT-AATCT-TTCAAGC-TCATTGGAAAAAATGCagctacatattcaagttctg
gi|7 : c-AAGCTA-A-TATGATT-AAGCTTATTTTTTA---T---AAAATGTTGGTGGA---A-ATGGCACCCGATCAA-------------A---------AAT--CCGTGAGTAATTT---CAGAGAATAACGTTCTTTCAAAACACC--------------TC---AG-TTTTCACG--TGC-----------A--TAAAGCGGTT-----CCCAAA--------------TATCCTTTCA-TGCAA-TAT--C-TGTGT-A--A-----------GTT-AATGACG--TCAC-ACGT-GTG-T-TTACTACTTTAGGAGTTAAA-----Gt
gi|8 : ttaagaataaactagcgaagttttacataaTTAGTGCAA-CTT--CTGGT-TTATCA-----------GTTGAATGGAGATTCA--AAGT-GTGGT-TTAGCAA-AAAGGAGGTAAAACAAGGGCGGAGAGGTGGAAAAAGA---CC--GCAAATAAAAAACAGT----------A--------AT--------A---TCTACCCTAATCTGATCCCTCACATCTAATTGTTATGGCTCGTATGTAACAGC-ATTCCAAGAATT--TGGAGG-AAGAATCAT-TTTCAT--ATGCCAt
gi|9 : atccttaacacat-A-TGTCATC-AAATTTATTTTCTT---A---AATATGCTGGAGAA---A-A-----CCCGATCAA-------------A---------A-T--CGGTG-----------CTA---------------AAA-----T--------------TCCGGAGATTCTC-TGTTTGC-----------ACGTA-------T-----GCAAAAACCATTGATATCC-T----TCAAAGTGCAACCTT--C-GGTccaagccaatgag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATGATATGAATAGTAATGCTGGGGTGGATTTCTTTTACTTTGAATTTAGCTACAGTAATGGCTGATCAGAAAAAAAAATATTAGGACAGATAAGAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111 1111111111111111111111111 1111111111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333 3333333333333333333333333333333333333333 111 111 111111 33333333333333333 11 1 1 11 11 11 1 1 1 1 222 1 1 1 1 1 22 4444444444 333333333333333333333 1 0000000000000000000000000 1 1 11 1 44444444 1 8888888888888888 1 11 1 1 1 1 3333333333333333333333333 1 1 11 1 1 1 1 1 1 1 1 11 1 11 1 1 111 111 1 1 11111111 11111 33333333333333333333333 7777777777777777777777777777777777777777777777777777 111111111111111111111111111111111111111111111111111111 1 111111111111111111 11111111 555555555555555555555555555555555555555555 11111111 111111 11111 111111 11 3333333 11 444444444444444444444444 1 11
lowQualScore : 1 6 666666 0000000000 5555555555555555555555555555555555555555 111 6 6 000 6 999999 8 0 8 0 11111111111111111 11 8 0 3 0 0 0 00 33 33 2 2 9 2 0 0 5 5 3 3 333 6 6 7 6 3 6 7 3 0 3 3 6 7 6 1 5 55 2 3333333333 111111111111111111111 0 0000000000000000000000000 5 0 3 66 0 88888888 3 1111111111111111 6 3 88 6 3 7 7 3 3 3 7 3333333333333333333333333 7 3 6 2 3 0 33 0 3 7 3 7 3 7 3 7 6 7 6 3 3 7 7 3 6 6 7 88 3 88 3 7 3 999 33 33 333 0 1 4 4 4 77777777 777 4 11111 33333333333333333333333 8 66 5555555555555555555555555555555555555555555555555555 777 4 66 000000000000000000000000000000000000000000000000000000 7 55 4 777777777777777777 3 7 55 55 1 3 3 3 55555555 0 99999 7 4 2 0 000000000000000000000000000000000000000000 44444444 777 000000 55 7777 3 777 1 4 4 66 4 66 55555 1 66 111111 1 22 0 55 0 3333333 4 8 4 6 66 66 888 77 555555555555555555555555 5 6 6 00 3
lowQualScore : . . ...... .......... ........................................ ... . . ... . ...... . . . . ................. .. . . . . . . .. .. .. . . . . . . . . . . ... . . . . . . . . . . . . . . . . .. . .......... ..................... . ......................... . . . .. . ........ . ................ . . .. . . . . . . . . ......................... . . . . . . .. . . . . . . . . . . . . . . . . . . . . .. . .. . . . ... .. .. ... . . . . . ........ ... . ..... ....................... . .. .................................................... ... . .. ...................................................... . .. . .................. . . .. .. . . . . ........ . ..... . . . . .......................................... ........ ... ...... .. .... . ... . . . .. . .. ..... . .. ...... . .. . .. . ....... . . . . .. .. ... .. ........................ . . . .. .
lowQualScore : 0 7 555555 5555555555 0000000000000000000000000000000000000000 777 7 7 888 7 222222 8 8 0 6 44444444444444444 00 0 8 2 0 8 0 66 88 88 5 5 2 5 0 0 0 5 2 2 333 7 7 3 7 3 7 3 3 7 3 3 7 3 7 0 5 00 5 8888888888 888888888888888888888 0 0000000000000000000000000 0 0 2 00 0 33333333 3 7777777777777777 7 3 33 7 3 3 3 3 3 3 3 3333333333333333333333333 3 3 7 5 2 0 88 0 3 3 3 3 3 3 3 3 7 3 7 3 3 3 3 3 7 7 3 33 3 33 3 3 3 000 55 55 888 0 4 4 4 4 66666666 888 4 11111 22222222222222222222222 9 11 6666666666666666666666666666666666666666666666666666 000 0 99 666666666666666666666666666666666666666666666666666666 3 00 5 000000000000000000 3 4 00 55 0 6 6 6 77777777 6 11111 5 0 5 5 666666666666666666666666666666666666666666 55555555 000 555555 00 3333 6 888 9 4 4 11 4 11 66666 1 44 222222 7 22 7 11 1 1111111 1 9 4 2 11 99 888 55 333333333333333333333333 5 7 7 77 2
consensus : ATGCCGGNTTATC-ATTAT--GGA----ATACCATGTTATTTCATGCATATAGT-----------------TTAAT-----A-----A------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCTTCTNTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGCTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACGTCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCNAGTTAATGCC-GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTNCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACANGTCTTGCGNCCNCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTA-A-TATCATC-AAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TGC-----------A--TA-------T-----TCAAAA--------------T----TCTCAGTGCAA-TTT--C-GGTGTTA--A-----------GTT-AATGACG--TCAC-ANGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAGGA---C---GC-------------T----------T--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--CAA-AATT--TGAGGG-AAGAATCAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCNGGGATGGA-TT-GTTTTGACTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
Reference ( family-1601 ) : ATGCCGGNTTATC-ATTAT--GGA----ATACCATGTTATTTCATGCATATAGT-----------------TTAAT-----A-----A------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCTTCTNTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGCTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACGTCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCNAGTTAATGCC-GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTNCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACANGTCTTGCGNCCNCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTA-A-TATCATC-AAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TGC-----------A--TA-------T-----TCAAAA--------------T----TCTCAGTGCAA-TTT--C-GGTGTTA--A-----------GTT-AATGACG--TCAC-ANGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAGGA---C---GC-------------T----------T--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--CAA-AATT--TGAGGG-AAGAATCAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCNGGGATGGA-TT-GTTTTGACTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
gi|1 : ATGC-GGTTTATC-ATTAT--GGAT---AAACCATGTTATTTCATGCATATAGCCATGGATATAGACTTAGTTAATCAGGTA-----A------AAGAACGACAACTC---GT-A-AAGTTAT---CAT-A------CACCCCCTTCT-TATTTAAAAACAAACTACAAT------AATC-------CCCCC--TTCTTATCGCTTCCGAG-CATGCG-CGTCATCA-CTTCCTTTCTGCCTCGG--ATCCAATCTTGATACA--CGGAAAAAATTATCGGAGTGATCAAATCT-GCCAAACATCGACTCTGTCTTCACGAAAT-AAGCT--TTAAGCTTCATAGAAAAA--TGCCAGAGGGCTAAAAAATTTC-AACGGG----CTTCCAAAGTCAATAA-GCCCGTAATCTA-CACAAGCCGGCCTCCCGACGTGTGTCTTCAAAGTGTATTTAG-TCGGGGGAGAACTGACCA-GATGTCGGACATGCGGTCACGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATGATCCACTATCACTGCAGTCAACACAAGCATATGCAGAA-CTATTCAAGAGA-TCAACATGC----AGCCATACCCTTTGTCCCAGTTAATGCCGGGCGCCGATCTCGGA-C----------CGGA------AAC-----GA-----ATCAGATGCCCAACTTCCCGACATCAATCAATCAAGGT-ACGAGTGCTTAGTTTCGATTTATGTACCCTAGCCCATTTAATAGTTTG-ACCTCTCCATTAGGACGCTCATGTATCCCAGATTGTTCATTGAATAGAGTTATTTCTTTCAGGACCATTGTTCTGAAAAT-CAAAATCAAATTATCTTTGTAAGGGGGTGTTTTTTCTTAT--CAAGCCTAGAATAAAGAAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACC-TGCAAAAGGCACCCATTAC-AAGCCATTCCTCTTGATATACGATATATTTAGAGGGGCATCCAG-GAATAGTGTAGGGAGGTTGGAGTTGGGACTATTGAATGTGCAAATCC-AATTCCGATTAAAAAAGTCGGT-CGATGCCTCC-TAAGCTGGGGTTC-ATTGATTCCGAGCTTT-GGTTTGTTTTATATGCAAGCCAGCAACAACAAATCTCTGCAAACGAGTCC-TTCTAACCGAGAAGTGTTATGAC-ACAATTATTGAAGGCGGTTT-----GCAGAAACAATATTGCAAGTA-TTTGCACCAAGGCATTA-ATTGT--GTAATAAACCCCA-CCATCAATGAACTGTTCAAAAATCTA-TTCAG-TCTTCTCAAGGGGAAATCATGCACCTGACAG-CTATAAAATCAG-CTCTTAGAAGCAAGCCATAG--CTGAACATATTCAAGTAAAGTTATAAACCAAATTATTCAGGCATTTATTAATTTTAGTTTACAG-TTTCTCTTTGTCAGATAA--CTTGTGGCCA---------CCCCCCCCCCTTCCTTGGTCTTAGCTTTTAGACTGCCGAGGTTA-A-TATCATT-AAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAA-------------A---------ATT--CTGTG-----------CAG---------------CAATT---T--------------TC---AG-TTTTCACG--GGC-----------A--TAT------T-----TTAAAAACCGACCCATATCCT----TCTCAGTGCAA-TTT--C-TGTG-TA--A-----------GTT-AATGACG--TCAC-ACGT-GTG-TGTTACTAC-TTGGGAGTTAAA-----GGTCAAGAG-TGGAAAAGGAC--C---GC-------------T----------G--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--C-A-AATT--TGA-GC-AAGAATCAT-TT--AC--ATGCCATGATACTAAT--AAGCCATGA-TACTAA-TAAATCCAGGGATGGATTT-GTTTTGGCTTGAACA--TAGCT--AGATTCAA---CTGCACCGGCAG------TGC---------------TTGGGATAG-ATCA-GAAAT-CTGCAAC--TACTTT-AACTGTA
gi|10 : ATGCCGGTTTATC-A--------------------ATTATTTCATGCATATAGTC----------------TTAAT-----AATTGGA------AATAACGACAACTC---TT-ACAAG-TAA--TCAT-ACATCACCACCCCCTTTCTTATTTAGAA-CAAA-------------------------------T-CTTATCGCTTCCGA-GCATGC-GCGTCATCCACTTCCTTTCCGCATCA-GCATCCAAaact
gi|11 : GTAA--A-----------ATT-AATGAGG--TCAT-AAGT-GTG-T-TTACAAC-TTA----------------C--AGAG-TGGAAGAGGA---C----C-------------C----------T--------ATTTACCACGA---T------AATGCTGATTGCCTG--TCAAAT-A--ATGATTCGT---TAACA-C-AT--CAA-GATTACTGATAG-TGAAACCGT-TT--g
gi|12 : aaatgaaaaCTTTGTCCCAGTTAATGCC-GGCGCCGATCTCGGACCGGAAACGAATCAGATGCCACAACTTCCTGATATCAATC-AAT-------------------------CAAGGT-ACGAGTGC-TAATTTCGATTTATGTACCCTTGTCCATTT-ATAGTTTG-ACCTCTCCATTAGGA-GCTCATGcgctttgaacttagctgca
gi|13 : -AAGCTA-ACTATGATC-AAACTTATTTTTTT---TTTTAATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------TAAT----T--------------TC---AG-
gi|14 : taaagttaaactaccgaggttttacataa-AAGCTA-A-TATGATC-AAACTTATTTTTTTTTTA---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------TAAT----T--------------TC---AG-agataatcttactcaa
gi|15 : ttaaagttaaactaccgaggttttacataaTGATCCCTCG--TCAAAT-A--ACGGCTTGT---TAGCT-C-AT--CAA-AATT--TGA-GA-AAGAATCAA-TT--CC--ATGTTATGATACAAAT---------------CAAT------CTGGGATGGA-TT-A-TTTGACTTGAACA--TAGCT--AGATTCAA---CTGCagataatcttactcaa
gi|16 : C-----------A--TA-------T-----CC------------------T----TCTCAGTGCAA-TTT--CTGGTG-TA--A-----------GTT-AATGACG--TCAC-ATGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAAGA---CGCTGC-------------T----------T--------AT--------A---T------T
gi|17 : attttaaagcggccGTGCAA-TTT--CTGGT-TTA--A-----------GTA-AATTATG--TCAT-AAGT-GTG-T-TTACAAC-GTAAGAGTTAAA-----GGCGGAGAG-TGGAAAAAGATTCT---GC-------------T----------T--------AC--------AGCGT------TA----AATCTCTCG--TCAAAT-
gi|18 : ATGA-TACTAAT-AAATGCTGGGATAGA-TT-GTTTTGACTTGAACA--TGGCT--AGATTCAA---CTGCAC
gi|19 : tTG-----------AAA---------------CAC-----C--------------TC---AG-TTTGCACC--TGCTAAAATGATTGA--TA-------T-----CC------------------T----TCTCAGTGCAACTTC--C-GGT-TTA----------------T-AATtttacataactgctcagaaaaaaaatattgggatagataaa
gi|2 : atccgtgcaataattcccgcgataattttatATGCCGGGTTATC-ATT-T--GGA----ATACCATGTTATTTCATGCATATAGT---------------------------------A------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCCTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATC--ATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGTTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACATCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCAAGTTA-TGC--GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTCCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACACGTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGTTA-A-TATCATT-GAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAA-------------A---------A-T--CTGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TCC-----------A---A-------T-----TTAAAA--------------T----TCTCAGTGCTA-TTT--C-GGTGTTA--A-----------GTT-TATGA-G--TC-C-ACGT-GTG-T-TTACTAC--TGGGAGTTAAA-----GGTCAAGAG-T-GAAAAGGA---C---GC-------------T----------C--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-C--ATGGC-TGT---TAGCA-C-AT--CAA-AATT--TGAGGGCAAGGAACAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCAGTGATGGA-TT-GTTTTG-CTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATACac
gi|21 : GGGTTATCCACTATTTGGA-----TAAC-TGTTATT-CATGCATATAGTGC---------------TTAGT-----A-----ATAGGTAAAGAACGACAACTC---TTAA-AAGTTATCATCAT-A------
gi|22 : tAGCCCTGAATAGTAATT-------GGGGTGGA-TT-GTTTTGACTTAAACA--TAGCT--A----CAA-------AAG----G------TGC---------------T----A-AAAA--A-GAAAT-CTGCAAC--TACTTTGAACTGTACAtca
gi|23 : ------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTCT---TATCA-C-AT--CAC-AATA--TG-GGG-AAGAATCA---T--ACCAATGCTATGATACTAATA
gi|24 : TGTCAGATAA--CTTGTGGCCACCCCCC-------------TTCT-TGGCCTTAGCTTTTAGACTGCCGAGGTTA-A-
gi|25 : AAA-----GGCGGAGAG-TGGAAAAAGA---C---GC-------------T-------------------AT--------A---T------TATTCTGATCCCTCA--TCAAAT-G--ATGG
gi|26 : ATGCCTCCGTAAGCTTGGGTTCTATTGATTCGGAGCTTTGG--TTG-TT
gi|27 : --A-----------GTA-AATGAGG--TCAT-AAGT-GTG-T-TTAC
gi|28 : ttaaatgcaatcgcCTGGGATGGA-TT-GTTTTGACTTGAACA--TGGa
gi|3 : tgATGCCGGGTTATC-ATT-T--GGA----ATACCATGTTATTTCATGCATATAGT---------------------------------A------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCCTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATC--ATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGTTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACATCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCAAGTTA-TGC--GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTCCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACACGTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGTTA-A-TATCATT-GAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAA-------------A---------A-T--CTGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TCC-----------A---A-------T-----TTAAAA--------------T----TCTCAGTGCTA-TTT--C-GGTGTTA--A-----------GTT-TATGA-G--TC-C-ACGT-GTG-T-TTACTAC--TGGGAGTTAAA-----GGTCAAGAG-T-GAAAAGGA---C---GC-------------T----------C--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-C--ATGGC-TGT---TAGCA-C-AT--CAA-AATT--TGAGGGCAAGGAACAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCAGTGATGGA-TT-GTTTTG-CTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
gi|4 : CTAGA-TGTCATCCAAACT-ATTTTT---------AGTATCT--GTGAA---A-A-----CC-GATCAA-------------ACGTTGCGTAA-TTCCCGGGATAATTCTATTCAAA--------------CAC-----C--------------TC---AG-TTATCACC--TGT-----------A--TA-------AGCGGATCGATA--------------TCTT-TCTAAATTCAA-CTTTCC-AGT-TTA--A-----------GTT-AATGAC---TCATTAAGTTGCG-T-TTAC---------------A-----GGT-AGGAA-TGGAAAAAGA---C---GC-------------TGTGTATCAACT--------AT--------A---T------TATTCTGATCCCACG--TTCAAT-G--A-GGCCTGT---TA-CA-CGAT--CA---------------AAGAATTATATT--CA--ATGCTATGATACTAATA------GTAA-TGCT------------GGGTGGATTT-GTTTT-AC-TGAACATGTAG-T--AGATTCAA---CTGCAC-TGTAGC-----TGCTCAGAAATAGAAATATTGGGATAG-ATCAGGAAATCCTGCAACTATCTTTCAAAAT-TACAT
gi|5 : tttactataa-AAACTTATTTCCTT---A---AACATGCTGGTGAACACACA-----CCCGATCAAAATCCGTGCAATTA---------A-T--TCCTG-----------AGA---------------TAA-----TCGTATTCAAACACCTC---AG-TCTTCACC--TGC-----------A--TA-------AGCGA-TCGATA--------------TCCT-TCTAAGTGCAA-CTT--CCGGT-TTA--AATGCAATCGCAGTA-AATGACG--TCAT-AAGT-GTG-T-TTAC--------------AA-------CGAAGAC---------GC---T---GC-------------T----------TTTATCACGAT--------A---T------TATTCTTACCCCTCG--TCAAAT-G--ATGGCTTGG---TAGCA-C-AT--CAA-GATT--TGA-GG-AAGA-------------------ATGATAC---TAAAAGTAATG---------------CTGTGGTGGA-TTCGTTTTGCCTTGAACT--AAGCTACATATTCAAGTTCTGCAC-TGTAGAAAAAATAA---------------ATGGTATAG-ATCA-GAAAT-CTNGAACTTta
gi|6 : acacacaagctatTGCCGGTTTATC-AATAT--GGATGAAATA---TGTTATCTCAAGGAT-TAGG-----------------T---------------A------CAGAATGATAAATAAAAGT-A-A--TTAT--CCACCA------CACACCTTTTTTTAT--AAAA-CAAACGACAATTCTTATAATCAGTAACACTTCCATT-CTT-TCCCCTTTGGAGCATGCG-TGTTATTAACTTT-TTTCTGCCTCAG-CATCCAACCTTGACACAGACAGAAAA--TTATCG-AGT-ATCCAATCTGGC-AA-CATCGACTTTGTTT-CATAGAAT-AATCT-TTCAAGC-TCATTGGAAAAAATGCagctacatattcaagttctg
gi|7 : c-AAGCTA-A-TATGATT-AAGCTTATTTTTTA---T---AAAATGTTGGTGGA---A-ATGGCACCCGATCAA-------------A---------AAT--CCGTGAGTAATTT---CAGAGAATAACGTTCTTTCAAAACACC--------------TC---AG-TTTTCACG--TGC-----------A--TAAAGCGGTT-----CCCAAA--------------TATCCTTTCA-TGCAA-TAT--C-TGTGT-A--A-----------GTT-AATGACG--TCAC-ACGT-GTG-T-TTACTACTTTAGGAGTTAAA-----Gt
gi|8 : ttaagaataaactagcgaagttttacataaTTAGTGCAA-CTT--CTGGT-TTATCA-----------GTTGAATGGAGATTCA--AAGT-GTGGT-TTAGCAA-AAAGGAGGTAAAACAAGGGCGGAGAGGTGGAAAAAGA---CC--GCAAATAAAAAACAGT----------A--------AT--------A---TCTACCCTAATCTGATCCCTCACATCTAATTGTTATGGCTCGTATGTAACAGC-ATTCCAAGAATT--TGGAGG-AAGAATCAT-TTTCAT--ATGCCAt
gi|9 : atccttaacacat-A-TGTCATC-AAATTTATTTTCTT---A---AATATGCTGGAGAA---A-A-----CCCGATCAA-------------A---------A-T--CGGTG-----------CTA---------------AAA-----T--------------TCCGGAGATTCTC-TGTTTGC-----------ACGTA-------T-----GCAAAAACCATTGATATCC-T----TCAAAGTGCAACCTT--C-GGTccaagccaatgag
blockSeqs : T C CTATTT TGAAATA GCTTAGTAATAGGTA AAA A C CAT C CATCAC T . TCTTATAATCAGTAACA AT . G G G CA GA . G G T C . . G A T A . C G A C . C T . . . C T C C A C C GGAAACGAAT TGCCACAACTTCCTGATATCA . . G . A CC . . . G C . . G . T A . . . T . A . C G T G . . . T . T . T . T C T C . . T T . C C T . . . . T . CGT CC CC CCC . G G C C TTTTT CAC C TGGCA AATCCGTGCAATTA A TC AGTAATTTCAGAGAATAACGTTCTTTCAAAACACC CGG A TT ACGTATGCAAAAACCATTGATATCCT C TC T TTAAATGCAATCGCA G G AT TT A T G . TACTTTAG ACAAG G G G CCGCAAATAAAAAACAGTA TTACCACG GCG CTACCC CA TGTT T ATG A G G TC G AC AGGGC C TA ACCA A AA AA TTAAATC T T C A TG AC GTT GG CTGCTCAGAAATAGAAATA A G C TT G
blockSeqs : G . ATAT ATACCA CTTAATAATTGGA . . . T . . G . AATC . . G G G CA . . G G T C . . G A T A . C G A C . C T . . . C T C A . . C . AACGA . . G . A CC . . . G C . . G . T A . . . T . A . C G T . . . . T . T . T . T C T C . . T T . C C T . . . . T . CGT GG AC CCC . . . . . TTTTA . . . ACGTTGCGTA . . AGATAATCGTATTCAAACACC . . . ATAAAGCGGTTCCCAAATATCC C . T TTATCA . C . T T . . . TACTTAG . G . G CGCTGTGTATCAACT . . . . A T . G . . . . . AGGGC T T TCAT T AA A TTAAATC T . . A . . . GG AAAAAATAA A . . TT G
blockSeqs : G . TTT ATACCA TA . . . T . . G . AATC . . A G G . . . . . G . . . . . . A A . . C . AACGA . . . . . G . G T . . . A CC CC . . . . . . AA . . . A . . ATAATTCTATTCAAACACC . . . ATAAGCGGATCGATATCTT . . C GTAAA . T . C A . . . AACGTAA . C . G TGCTTTTATCACG . . . . A T . G . . . . . ATAG A A CC T AA A TAAATG A . . A . . . G TGC A . . TA G
blockSeqs : G . TTT TAAC A . . . T . . T . . . . . . . . . . . . AA . . . A . . CAGTAATT . . . TAAAATGATTGATATCCT . . T GTTAA . G . T C . . . CAAAAAG . G . G CGCTGCTT . . . . C C . T . . . . . GAGG T T AC T A A TT T . . A . . . T TGC . . . TT A
blockSeqs : T . . . A . . . C . . . . . . TA . . . A . . CAGTAATT . . . ATAAGCGATCGATATCCT . . . GTTAA . C . C A . . . AACTTA . C . G TTCTGCTT . . . . G T . G . . . . . AGA A T AC T . A T A . . A . . . T TGC . . . .
blockSeqs : . . . . AT . . . A . . AAACACC . . . AATTTAAAAT . . . GTAA . C . T C . . . TACTGG . G . G CGCTC . . . . G T . G . . . . . GGG T T CA . . . T . . C . . .
blockSeqs : . . . TA . . . A . . CAGCAAT . . . AATTTAAAAT . . . TTAA . C . C A . . . TACTGG . G . . CGCTC . . . . C . . A . . . . . AGG T . . . . . . . . . . .
blockSeqs : . . . . . . . A . . CAGCAAT . . ATATCCT . . . TTAA . A . T A . . . . . . . . CCCT . . . . G . . . . . . . . . . . . . . . .
blockSeqs : CTAAAAT . . . . . GTAA . . . C C . . . . . . . . CGCT . . . . G
blockSeqs : . . . TTA . . . . A . . . . . .
blockSeqs : .
blockSeqCons : TTT*** ATACA***** NCTAATGGA******************************* T** NACTAG** CGCTGCTT********************************** AA T****** T* TT
originalCons : ATGCCGGNTTATC-ATTAT--GGA----ATACCATGTTATTTCATGCATATAGT-----------------TTAAT-----A-----A------AAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCTTCTNTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGCTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACGTCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCNAGTTAATGCC-GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTNCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACANGTCTTGCGNCCNCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTA-A-TATCATC-AAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TGC-----------A--TA-------T-----TCAAAA--------------T----TCTCAGTGCAA-TTT--C-GGTGTTA--A-----------GTT-AATGACG--TCAC-ANGT-GTG-T-TTACTAC-TTAGGAGTTAAA-----GGCGAAGAG-TGGAAAAGGA---C---GC-------------T----------T--------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--CAA-AATT--TGAGGG-AAGAATCAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCNGGGATGGA-TT-GTTTTGACTTGAACA--TAGCT--AGATTCAA---CTGCACGGGCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
finalCons : ATGCCGGNTTATC-ATTT---GGAATACA-----TGTTATTTCATGCATATAGTNCTAATGGA-------------------------------AAGAACGACAACTC---GT-A-AAGTTATT--CAT-A------CACCCCCTTCTNTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGCTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACGTCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCNAGTTAATGCC-GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTNCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACANGTCTTGCGNCCNCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTA-A-TATCATC-AAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TGC-----------A--TA-------T-----TCAAAA--------------T----TCTCAGTGCAA-TTT--C-GGTGTTA--A-----------GTT-AATGACG--TCAC-ANGT-GTG-T-TTACNACTAG--GAGTTAAA-----GGCGAAGAG-TGGAAAAGGACGCTGCTT----------------------------------AT--------A---T------TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--CAA-AATT--TGAGGG-AAGAATCAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAAT------CNGGGATGGA-TT-GTTTTGACTTGAACA--TAGCT--AGATTCAA---CTGCACT-GCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATGATATGAATAGTAATGCTGGGGTGGATTTCTTTTACTTTGAATTTAGCTACAGTAATGGCTGATCAGAAAAAAAAATATTAGGACAGATAAGAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111 1111111111111111111111111 1111111111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 4444444444 4444444444444444444444444444444444444 111 111 111111 33333333333333333 11 1 1 11 11 11 1 1 1 1 222 1 1 1 1 1 22 4444444444 333333333333333333333 1 0000000000000000000000000 1 1 11 1 44444444 1 8888888888888888 1 11 1 1 1 1 3333333333333333333333333 1 1 11 1 1 1 1 1 1 1 1 11 1 11 1 1 111 111 1 1 11111111 11111 33333333333333333333333 7777777777777777777777777777777777777777777777777777 111111111111111111111111111111111111111111111111111111 1 111111111111111111 2222 1111111111 555555555555555555555555555555555555555 11111 111111 11 444444 222 444444444444444444444444 1 11
lowQualScore : 1 77777777 0000000000 1111111111111111111111111111111111111 111 6 6 000 6 999999 8 0 8 0 11111111111111111 11 8 0 3 0 0 0 00 33 33 2 2 9 2 0 0 5 5 3 3 333 6 6 7 6 3 6 7 3 0 3 3 6 7 6 1 5 55 2 3333333333 111111111111111111111 0 0000000000000000000000000 5 0 3 66 0 88888888 3 1111111111111111 6 3 88 6 3 7 7 3 3 3 7 3333333333333333333333333 7 3 6 2 3 0 33 0 3 7 3 7 3 7 3 7 6 7 6 3 3 7 7 3 6 6 7 88 3 88 3 7 3 999 33 33 333 0 1 4 4 4 77777777 777 4 11111 33333333333333333333333 8 66 5555555555555555555555555555555555555555555555555555 777 4 66 000000000000000000000000000000000000000000000000000000 7 55 4 777777777777777777 3 7 55 55 1 3 3 3 3 1 1111 3333333333 4 2 0 4 111111111111111111111111111111111111111 88888888 55 7777 3 777 1 4 4 66 4 66 55555 1 66 111111 1 22 0 55 0 777777 2 8 4 6 66 66 888 000 555555555555555555555555 5 6 6 00 3
lowQualScore : . ........ .......... ..................................... ... . . ... . ...... . . . . ................. .. . . . . . . .. .. .. . . . . . . . . . . ... . . . . . . . . . . . . . . . . .. . .......... ..................... . ......................... . . . .. . ........ . ................ . . .. . . . . . . . . ......................... . . . . . . .. . . . . . . . . . . . . . . . . . . . . .. . .. . . . ... .. .. ... . . . . . ........ ... . ..... ....................... . .. .................................................... ... . .. ...................................................... . .. . .................. . . .. .. . . . . . . .... .......... . . . . ....................................... ........ .. .... . ... . . . .. . .. ..... . .. ...... . .. . .. . ...... . . . . .. .. ... ... ........................ . . . .. .
lowQualScore : 0 00000000 8888888888 3333333333333333333333333333333333333 777 7 7 888 7 222222 8 8 0 6 44444444444444444 00 0 8 2 0 8 0 66 88 88 5 5 2 5 0 0 0 5 2 2 333 7 7 3 7 3 7 3 3 7 3 3 7 3 7 0 5 00 5 8888888888 888888888888888888888 0 0000000000000000000000000 0 0 2 00 0 33333333 3 7777777777777777 7 3 33 7 3 3 3 3 3 3 3 3333333333333333333333333 3 3 7 5 2 0 88 0 3 3 3 3 3 3 3 3 7 3 7 3 3 3 3 3 7 7 3 33 3 33 3 3 3 000 55 55 888 0 4 4 4 4 66666666 888 4 11111 22222222222222222222222 9 11 6666666666666666666666666666666666666666666666666666 000 0 99 666666666666666666666666666666666666666666666666666666 3 00 5 000000000000000000 3 4 00 55 0 6 6 6 6 0 2222 4444444444 0 5 5 0 999999999999999999999999999999999999999 99999999 00 3333 6 888 9 4 4 11 4 11 66666 1 44 222222 7 22 7 11 1 888888 6 9 4 2 11 99 888 666 333333333333333333333333 5 7 7 77 2
consensus : ATGCCGGNTTATC----ATT-TGGA--ATA---C-ATGTTATTTCATGCATATAGT-----------------TT----AA----T--GG--AAAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCTTCTNTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGCTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACGTCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCNAGTTAATGCC-GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTNCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACANGTCTTGCGNCCNCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTA-A-TATCATC-AAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TGC-----------A--TA-------T-----TCAAAA--------------T----TCTCAGTGCAA-TTT--C-GGTGTTA--A-----------GTT-AATGACG--TCAC-ANGT-GTG-T-TTA-CNAC--TAGGAGTTAAA-----GGCGGAGAG-TGGAAAAGGA-C-GC----------------TGC-------TT--------AT----A---TTATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--CAA-AATT--TGAGGG-AAGAATCAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAAT-AA---CNGGGATGGA-TT-GTTTTGACTTGAACA--TAGCT--AGATTCAA---CTGCAC-T-GCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
Reference ( family-1601 ) : ATGCCGGNTTATC----ATT-TGGA--ATA---C-ATGTTATTTCATGCATATAGTN----------------CT----AA----T--GG--AAAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCTTCTNTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATCCAATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGCTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACGTCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCNAGTTAATGCC-GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTNCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACANGTCTTGCGNCCNCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGCTA-A-TATCATC-AAACTTATTTTTTN---A---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TGC-----------A--TA-------T-----TCAAAA--------------T----TCTCAGTGCAA-TTT--C-GGTGTTA--A-----------GTT-AATGACG--TCAC-ANGT-GTG-T-TTA-CNAC--TAGGAGTTAAA-----GGCGAAGAG-TGGAAAAGGA-C-GC----------------TGC-------TT--------AT----A---TTATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--CAA-AATT--TGAGGG-AAGAATCAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAAT------CNGGGATGGA-TT-GTTTTGACTTGAACA--TAGCT--AGATTCAA---CTGCAC-T-GCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
gi|1 : ATGC-GGTTTATC----ATTATGGA---TAAACC-ATGTTATTTCATGCATATAGCCATGGATATAGACTTAGTT----AA----TCAGGTAAAAGAACGACAACTC---GT-A-AAGTTAT---CAT-A------CACCCCCTTCT-TATTTAAAAACAAACTACAAT------AATC-------CCCCC--TTCTTATCGCTTCCGAG-CATGCG-CGTCATCA-CTTCCTTTCTGCCTCGG--ATCCAATCTTGATACA--CGGAAAAAATTATCGGAGTGATCAAATCT-GCCAAACATCGACTCTGTCTTCACGAAAT-AAGCT--TTAAGCTTCATAGAAAAA--TGCCAGAGGGCTAAAAAATTTC-AACGGG----CTTCCAAAGTCAATAA-GCCCGTAATCTA-CACAAGCCGGCCTCCCGACGTGTGTCTTCAAAGTGTATTTAG-TCGGGGGAGAACTGACCA-GATGTCGGACATGCGGTCACGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATGATCCACTATCACTGCAGTCAACACAAGCATATGCAGAA-CTATTCAAGAGA-TCAACATGC----AGCCATACCCTTTGTCCCAGTTAATGCCGGGCGCCGATCTCGGA-C----------CGGA------AAC-----GA-----ATCAGATGCCCAACTTCCCGACATCAATCAATCAAGGT-ACGAGTGCTTAGTTTCGATTTATGTACCCTAGCCCATTTAATAGTTTG-ACCTCTCCATTAGGACGCTCATGTATCCCAGATTGTTCATTGAATAGAGTTATTTCTTTCAGGACCATTGTTCTGAAAAT-CAAAATCAAATTATCTTTGTAAGGGGGTGTTTTTTCTTAT--CAAGCCTAGAATAAAGAAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACC-TGCAAAAGGCACCCATTAC-AAGCCATTCCTCTTGATATACGATATATTTAGAGGGGCATCCAG-GAATAGTGTAGGGAGGTTGGAGTTGGGACTATTGAATGTGCAAATCC-AATTCCGATTAAAAAAGTCGGT-CGATGCCTCC-TAAGCTGGGGTTC-ATTGATTCCGAGCTTT-GGTTTGTTTTATATGCAAGCCAGCAACAACAAATCTCTGCAAACGAGTCC-TTCTAACCGAGAAGTGTTATGAC-ACAATTATTGAAGGCGGTTT-----GCAGAAACAATATTGCAAGTA-TTTGCACCAAGGCATTA-ATTGT--GTAATAAACCCCA-CCATCAATGAACTGTTCAAAAATCTA-TTCAG-TCTTCTCAAGGGGAAATCATGCACCTGACAG-CTATAAAATCAG-CTCTTAGAAGCAAGCCATAG--CTGAACATATTCAAGTAAAGTTATAAACCAAATTATTCAGGCATTTATTAATTTTAGTTTACAG-TTTCTCTTTGTCAGATAA--CTTGTGGCCA---------CCCCCCCCCCTTCCTTGGTCTTAGCTTTTAGACTGCCGAGGTTA-A-TATCATT-AAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAA-------------A---------ATT--CTGTG-----------CAG---------------CAATT---T--------------TC---AG-TTTTCACG--GGC-----------A--TAT------T-----TTAAAAACCGACCCATATCCT----TCTCAGTGCAA-TTT--C-TGTG-TA--A-----------GTT-AATGACG--TCAC-ACGT-GTG-TGTTA-CTACT-TGGGAGTTAAA-----GGTCAAGAG-TGGAAAAGGACC-GC----------------TG------------------AT----A---TTATTCTGATCCCTCG--TCAAAT-G--ATGGCTTGT---TAGCA-C-AT--C-A-AATT--TGA-GC-AAGAATCAT-TT--AC--ATGCCATGATACTAAT--AAGCCATGA-TACTAATAAATC-CAGGGATGGATTT-GTTTTGGCTTGAACA--TAGCT--AGATTCAA---CTGCAC-CGGCAG------TGC---------------TTGGGATAG-ATCA-GAAAT-CTGCAAC--TACTTT-AACTGTA
gi|10 : ATGCCGGTTTATC----A-------------------ATTATTTCATGCATATAGTC----------------TT----AATAATT--GG--AAATAACGACAACTC---TT-ACAAG-TAA--TCAT-ACATCACCACCCCCTTTCTTATTTAGAA-CAAA-------------------------------T-CTTATCGCTTCCGA-GCATGC-GCGTCATCCACTTCCTTTCCGCATCA-GCATCCAAaact
gi|11 : GTAA--A-----------ATT-AATGAGG--TCAT-AAGT-GTG-T-TTA-CAAC--------TTA---------C--AGAG-TGGAAGAGGA-C-CC----------------TAT-------TT--------ACCACGA---TAATGCTGATTGCCTG--TCAAAT-A--ATGATTCGT---TAACA-C-AT--CAA-GATTACTGATAG-TGAAACCGT-TT--g
gi|12 : aaatgaaaaCTTTGTCCCAGTTAATGCC-GGCGCCGATCTCGGACCGGAAACGAATCAGATGCCACAACTTCCTGATATCAATC-AAT-------------------------CAAGGT-ACGAGTGC-TAATTTCGATTTATGTACCCTTGTCCATTT-ATAGTTTG-ACCTCTCCATTAGGA-GCTCATGcgctttgaacttagctgca
gi|13 : -AAGCTA-ACTATGATC-AAACTTATTTTTTT---TTTTAATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------TAAT----T--------------TC---AG-
gi|14 : taaagttaaactaccgaggttttacataa-AAGCTA-A-TATGATC-AAACTTATTTTTTTTTTA---AATATGTTGGTGGA---A-A-----CCCGATCAA-------------A---------A-T--CCGTG-----------CAG---------------TAAT----T--------------TC---AG-agataatcttactcaa
gi|15 : ttaaagttaaactaccgaggttttacataaTGATCCCTCG--TCAAAT-A--ACGGCTTGT---TAGCT-C-AT--CAA-AATT--TGA-GA-AAGAATCAA-TT--CC--ATGTTATGATACAAAT---------------CAAT------CTGGGATGGA-TT-A-TTTGACTTGAACA--TAGCT--AGATTCAA---CTGCagataatcttactcaa
gi|16 : C-----------A--TA-------T-----CC------------------T----TCTCAGTGCAA-TTT--CTGGTG-TA--A-----------GTT-AATGACG--TCAC-ATGT-GTG-T-TTA-CTACT-TAGGAGTTAAA-----GGCGAAGAG-TGGAAAAAGA-C-GC----------------TGC-------TT--------AT----A---TT
gi|17 : attttaaagcggccGTGCAA-TTT--CTGGT-TTA--A-----------GTA-AATTATG--TCAT-AAGT-GTG-T-TTA-CAACG-TAAGAGTTAAA-----GGCGGAGAG-TGGAAAAAGA-T-TC----------------TGC-------TT--------AC----AGCGTTA----AATCTCTCG--TCAAAT-
gi|18 : ATGA-TACTAATAAATG-CTGGGATAGA-TT-GTTTTGACTTGAACA--TGGCT--AGATTCAA---CTGCAC-T-
gi|19 : tTG-----------AAA---------------CAC-----C--------------TC---AG-TTTGCACC--TGCTAAAATGATTGA--TA-------T-----CC------------------T----TCTCAGTGCAACTTC--C-GGT-TTA----------------T-AATttacataactgctcagaaaaaaaatattgggatagataaa
gi|2 : atccgtgcaataattcccgcgataattttatATGCCGGGTTATC----ATT-TGGA--ATA---CCATGTTATTTCATGCATATAGT------------------------------------AAAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCCTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATC--ATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGTTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACATCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCAAGTTA-TGC--GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTCCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACACGTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGTTA-A-TATCATT-GAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAA-------------A---------A-T--CTGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TCC-----------A---A-------T-----TTAAAA--------------T----TCTCAGTGCTA-TTT--C-GGTGTTA--A-----------GTT-TATGA-G--TC-C-ACGT-GTG-T-TTA-CTAC--TGGGAGTTAAA-----GGTCAAGAG-T-GAAAAGGA-C--------------------GC-------TC--------AT----A---TTATTCTGATCCCTCG--TCAAAT-C--ATGGC-TGT---TAGCA-C-AT--CAA-AATT--TGAGGGCAAGGAACAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCAGTGATGGA-TT-GTTTTG-CTTGAACA--TAGCT--AGATTCAA---CTGCACGG-GCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATACac
gi|21 : GGGTTATCCACTATT-TGGA---TA---A-CTGTTATT-CATGCATATAGTG----------------CTTAGTAA----T--AGGTAAAGAACGACAACTC---TTAA-AAGTTATCATCAT-A------
gi|22 : tAGCCCTGAATAGTAAT------TGGGG-TGGA-TT-GTTTTGACTTAAACA--TAGCT--A----CAA---AAG---------G------TGC---------------T----A-AAAA--A-GAAAT-CTGCAAC--TACTTTGAACTGTACAtca
gi|23 : TATTCTGATCCCTCG--TCAAAT-G--ATGGCTTCT---TATCA-C-AT--CAC-AATA--TG-GGG-AAGAATCA---T--ACCAATGCTATGATACTAATA
gi|24 : TGTCAGATAA--CTTGTGGCCACCCCCC-------------TTCT-TGGCCTTAGCTTTTAGACTGCCGAGGTTA-A-
gi|25 : AAA-----GGCGGAGAG-TGGAAAAAGA-C-GC----------------T-------------------AT----A---TTATTCTGATCCCTCA--TCAAAT-G--ATGG
gi|26 : ATGCCTCCGTAAGCTTGGGTTCTATTGATTCGGAGCTTTGG--TTG-TT
gi|27 : --A-----------GTA-AATGAGG--TCAT-AAGT-GTG-T-TTA-C
gi|28 : ttaaatgcaatcgc------CTGGGATGGA-TT-GTTTTGACTTGAACA--TGGa
gi|3 : tgATGCCGGGTTATC----ATT-TGGA--ATA---CCATGTTATTTCATGCATATAGT------------------------------------AAAGAACGACAACTC---GT-A-AAGTTAT--TCAT-A------CACCCCCCTCTGTATTTAAAA-CAAACTACAAT------AATC-------CCCCC--T-CTTATCGCTTCCGAGGCATGCGGCGTCATCAACTTCCTTTCTGCCTCAGGCATC--ATCTTGATACA--CGGAAAA--TTATCGGAGTGATCAAATCTTGCCAA-CATCGACTCTGTCT-CATGAAATGAAGTTATTTAAGCTTCATAGAAAAAAATGCCAGAGGGC---AAAATTCCCAACGGGGGCTTTTTCAAAGTCAATAAAGCCCGTAATCTACCAC-AGCCGGCCTCCCGACGTGTGTCTTCCAAGTGTATTTAGCTCGGGGGAGAGCTGGCCATGATGTC-GACATGCGGTCACATCGGGATAGTCTTCGTGGTTTAATAGT-ATTCAGCTTATGATCCACTATCGCTGCAG-CAACACAGGCATATGCAGAACCTATTCAAGAGATTCAAAATTCCACAAGCCATACCCTTTGTCCAAGTTA-TGC--GGCGCCGATCTCGGACC----------CGGA------AAC-----GA-----ATC-GAT-------------------------CAAGGTGACGAGTGC-TAATTTCGATTTATGTACCCTAGTCCATTTAATAGTTTCCACCTCTCCATTAGGA-GCTCATGT--------TTGTTCATTGAAT-GAGTTACTT------G---------TCTGAAAATCCCAAATCAAATTATCTTTG-AAGTGTGTGTTTTT--CTATGGCAAGCCTAGAA-GAAGGAAATAAGATAACAAACTTCATGCAATTTTATTTATGCATCTATTTACCTTGCAAAGGGCACCCATTACAAAGCC-TTCCTCTTGATATACGATATA-TTAGA-GGGCGTCCAGTAAATAGTGTAGGG-------------------------TGCAAATCCAAATTCCGATTAAAAAAG-CGGTCCGATGCCTCCGTAAGCTGGGGTTCTATTGATTCGGAGCTTT-G--TTG-TTTATATGC-AGCCAGCAACAACAAATCTCTACAAACGAGTCCTTTCTAACC-AGAAGTGTTATGACTTCAATTA-TGAAGGCGTTTTTGCCAGC-GAAACAATATTGCAAGTATTTTGCACCAAGGCATTACATTGTTAATAATACACCCCACCCATCAA-GATTTG-TCAAAAATCTATTTCAGTTCTTCTCAAGGGG-AATCATGCACCTGACAGCCTAATAAATCAGCCTCTTAGAAGCAAGCCATAGTTCTGAAC--ATTCAAGTAAAGTTA-AA--CAAATTATTCAGGCATTTATT-TTTTTAGTTACCAGTTTTCTC-TTGTCAGACACGTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCTTCC-TGGTCTTAGCTTTTAGACTGCC-AGGTTA-A-TATCATT-GAACTTAATTTTTA---A---AATATGTTGGTGGA---A-A-----CTCGATCAA-------------A---------A-T--CTGTG-----------CAG---------------CAA-----T--------------TC---AG-TTTTCACG--TCC-----------A---A-------T-----TTAAAA--------------T----TCTCAGTGCTA-TTT--C-GGTGTTA--A-----------GTT-TATGA-G--TC-C-ACGT-GTG-T-TTA-CTAC--TGGGAGTTAAA-----GGTCAAGAG-T-GAAAAGGA-C--------------------GC-------TC--------AT----A---TTATTCTGATCCCTCG--TCAAAT-C--ATGGC-TGT---TAGCA-C-AT--CAA-AATT--TGAGGGCAAGGAACAT-TT--AC--ATGCCATGATACTAATAAAAGCCATGA-TACTAATTAAATCCAGTGATGGA-TT-GTTTTG-CTTGAACA--TAGCT--AGATTCAA---CTGCACGG-GCAG------TGC---------------TTGGGATAGAATCA-GAAAT-CTGCAACTTTACTTCGAACTGTACATATAC
gi|4 : CTAGA-TGTCATCCAAACT-ATTTTT---------AGTATCT--GTGAA---A-A-----CC-GATCAA-------------ACGTTGCGTAA-TTCCCGGGATAATTCTATTCAAA--------------CAC-----C--------------TC---AG-TTATCACC--TGT-----------A--TA-------AGCGGATCGATA--------------TCTT-TCTAAATTCAA-CTTTCC-AGT-TTA--A-----------GTT-AATGAC---TCATTAAGTTGCG-T-TTA-CAGG--TAGGAAT--------------------GGAAAAAGA-C-GC----------------TGTGTATCAACT--------AT----A---TTATTCTGATCCCACG--TTCAAT-G--A-GGCCTGT---TA-CA-CGAT--CA---------------AAGAATTATATT--CA--ATGCTATGATACTAATA------GTAA-TGCT------------GGGTGGATTT-GTTTT-AC-TGAACATGTAG-T--AGATTCAA---CTGCAC-T-GTAGC-----TGCTCAGAAATAGAAATATTGGGATAG-ATCAGGAAATCCTGCAACTATCTTTCAAAAT-TACAT
gi|5 : tttactataa-AAACTTATTTCCTT---A---AACATGCTGGTGAACACACA-----CCCGATCAAAATCCGTGCAATTA---------A-T--TCCTG-----------AGA---------------TAA-----TCGTATTCAAACACCTC---AG-TCTTCACC--TGC-----------A--TA-------AGCGA-TCGATA--------------TCCT-TCTAAGTGCAA-CTT--CCGGT-TTA--AATGCAATCGCAGTA-AATGACG--TCAT-AAGT-GTG-T-TTA-CAAC------------------------------GAA---GA-C-GC----------------TGC-------TTTTATCACGAT----A---TTATTCTTACCCCTCG--TCAAAT-G--ATGGCTTGG---TAGCA-C-AT--CAA-GATT--TGA-GG-AAGA-------------------ATGATAC---TAAAAGTAATG---------------CTGTGGTGGA-TTCGTTTTGCCTTGAACT--AAGCTACATATTCAAGTTCTGCAC-T-GTAGAAAAAATAA---------------ATGGTATAG-ATCA-GAAAT-CTNGAACTTta
gi|6 : acacacaagctatTGCCGGTTTATC----AATATGGATGAAA---T-ATGTTATCTCAAGGAT-TAG---------------------------------GT--ACAGAATGATAAATAAAAGT-A-A--TTAT--CCACCA------CACACCTTTTTTTAT--AAAA-CAAACGACAATTCTTATAATCAGTAACACTTCCATT-CTT-TCCCCTTTGGAGCATGCG-TGTTATTAACTTT-TTTCTGCCTCAG-CATCCAACCTTGACACAGACAGAAAA--TTATCG-AGT-ATCCAATCTGGC-AA-CATCGACTTTGTTT-CATAGAAT-AATCT-TTCAAGC-TCATTGGAAAAAATGCagctacatattcaagttctg
gi|7 : c-AAGCTA-A-TATGATT-AAGCTTATTTTTTA---T---AAAATGTTGGTGGA---A-ATGGCACCCGATCAA-------------A---------AAT--CCGTGAGTAATTT---CAGAGAATAACGTTCTTTCAAAACACC--------------TC---AG-TTTTCACG--TGC-----------A--TAAAGCGGTT-----CCCAAA--------------TATCCTTTCA-TGCAA-TAT--C-TGTGT-A--A-----------GTT-AATGACG--TCAC-ACGT-GTG-T-TTA-CTACTTTAGGAGTTAAA-----Gt
gi|8 : ttaagaataaactagcgaagttttacataaTTAGTGCAA-CTT--CTGGT-TTATCA-----------GTTGAATGGAGATTCA--AAGT-GTGGT-TTAGCAAA--AAGGAGGTAAAACAAGGGCGGAGAGGTGGAAAAAGA-CCGCAAATAAAAAACAGTAATAT-------CT--------AC----C---CTAATCTGATCCCTCACATCTAATTGTTATGGCTCGTATGTAACAGC-ATTCCAAGAATT--TGGAGG-AAGAATCAT-TTTCAT--ATGCCAt
gi|9 : atccttaacacat-A-TGTCATC-AAATTTATTTTCTT---A---AATATGCTGGAGAA---A-A-----CCCGATCAA-------------A---------A-T--CGGTG-----------CTA---------------AAA-----T--------------TCCGGAGATTCTC-TGTTTGC-----------ACGTA-------T-----GCAAAAACCATTGATATCC-T----TCAAAGTGCAACCTT--C-GGTccaagccaatgag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATGATATGAATAGTAATGCTGGGGTGGATTTCTTTTACTTTGAATTTAGCTACAGTAATGGCTGATCAGAAAAAAAAATATTAGGACAGATAAGAAAT