lowQualScore                  :                                         111111111111111111111111111111111111111111111111111111111111                                                                                                444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444                                         1111111111111111111111111111111111111111111111111111111111111111                               
lowQualScore                  :                                333      222222222222222222222222222222222222222222222222222222222222     11     1          8888888888888888888888888888888888888888888  111111                      333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333                       33                5555555555555555555555555555555555555555555555555555555555555555    1      222         4444    
lowQualScore                  :                             2  777   6  111111111111111111111111111111111111111111111111111111111111     99  1  1  8       9999999999999999999999999999999999999999999  222222       6   6 88       666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666    88    6       4 2  11      6         4444444444444444444444444444444444444444444444444444444444444444 6  5    6 777         3333    
lowQualScore                  :                             .  ...   .  ............................................................     ..  .  .  .       ...........................................  ......       .   . ..       ...........................................................................................................................................................................................................................................................................................................................    ..    .       . .  ..      .         ................................................................ .  .    . ...         ....    
lowQualScore                  :                             5  000   0  666666666666666666666666666666666666666666666666666666666666     22  2  6  2       4444444444444444444444444444444444444444444  888888       5   7 00       333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333    55    0       0 5  77      0         4444444444444444444444444444444444444444444444444444444444444444 0  0    0 000         0000    
consensus                     :                       GGGCATNGANCGGATTTTTGATCGGTATTTCGTTACNGAAATNAAGATNTTTTATGAA----TTT---AATGG-----TGGAT-TAAAAAGTANTTTTACAC-A-GGN-TA-TACT---TCGTATT---TATAC-CGTACATA-AA--TCC-GGCTCCCNAAA-TCGTGTTTGT-------------------C-----AA-----CACGCTTNTCGTAN-----NCAGG-----------------------A-----A----------A---CAT---------GTATGTCAAAAGCATTCAACAT---TT--CGA-TATACGTCAAC---TGAT-ATATNAATTTA-GGAGCAAGCAC-AGTA--GAA--AA---AA-ANANTTTC-G--TTG----AAAAGGCTTTTTCCCATC----------GAAGCC--ATCA-GCTTTG-TAACTGAGCCACGT----ATGA-ATATGTGAGCACCAGGGCTCGTGNCTCGTTCTGAAANTNAAA-GTTTAGATGTCTCAAACAC-TC-----TACATCTTTGCGTCAG---TTTTTGAAAT-----TTCGTCTTGTG--------TCTACATTTTATACGAATCAAATACTATTAT
Reference ( gi|1 )            :                       GGGCATGGACAAGATCTTGGATCGAT----CG--ACTGAAAT---GATCTTTTATGAA----TTT---AATGG-----TGGAT-TAAAAAATAGTTTTACAA-A-GAT-TA-TACT---TGGTACT---TATACACGTGCATACAA--CCT-GGCTCCCTAAA-TCATGTTTGT-------------------C-----AA-----TAGGCTTCTCATAT-----CCAGG-----------------------A-----A----------A---CAT---------GTATGTCAAAAGCATTCAATAT---TT--TGA-TACACGTCTA----TGAT-ATATCAATTTATGGATCAAGCATGAATA-AGAATTAA---AGCAAAGCTTT-G--TTG----TAAAAGCTTCTCCCCCCCTCCCCAAAAAAAAACCCCATCAAG---TGATAGTTTAGTCACGTGACAATGAAATATATAA--A--AGTGATTGTACCTTGCTTTAAAAATCAA--GTTTAGGTGTCTCAAATACATTATATGTACATCTTGGCATCAG---TGTTTGAAAT-----TTTGTTTTTTGTTGTTTTTTTTAAATTTCACCTGAATCAAATGTT-TTATCA
gi|2                          :                       GAGCATTGATTGGATTTTTGA-CAATATTTCGTTACAGAAATAAAGATCTTTTATGA-----TTT---AA--G-----TGGAT--GAAAACTATTTTTACGC-A-GGA-TA-TACT---TTGCATT---TA----CGTAAA---AA--TCC-AGCTCCCCAAACTTATGTTTGT-------------------C-----AA-----CACGCTTGTCCTAT-----ACAGGTAACCTCATGCGGAGGTGAGAACA-----A----------AGTACAT---------GTATATGTAAAGCATTCAACATAAGTTAATGA-TA-------------GGT-AAATCAATTTA-GGGGCAAGC
gi|6                          : aaagaaaatggatttaatttatGGACATGGAGCCGATTTT---TTGGT----TA--ATTGAAATT--GACAGTATATGAAGATATTT---CATAGATAAGTGGGC-TAATAA-TATTTTTACAC-ACGAT--A-TGCTAAATG-TATT---TA--------CATATAA--TTC-AGTTCCCAAAA-TTTTGTTTGT-------------------C-----AA-----CATGTTTtaaaag
gi|3                          :                                                                 taaagTTTTTTAT-------TTTCTCAATG------TGAATAGAAGAAATCATTTTTCAGCA-GATATAATACT---TCATATT---TATATA---------AA--TCT-GGCTCCCAAAA-T--TGTGTGT-------------------CTAGCTAA-----GAAAC----CATAT-----G-AGG-----------------------A-----GGTGGAACGCTA---CATTTCTAAAACGTATGTCAAAAGCATCCAACAT---TT--CCA----ACATCTACAT-TAAT-G-ATAAATCTATGGAGCAAGCACAAGTA-CGAAATAACTGAAAATAGCTTT-ATTTTGCTTTTAAAAGC
gi|16                         :                                                                           TATGAA----T-----AA--G-----TGGAT-TAAAAAGTACTTTTACAC-A-GGA-CA-TACT---TTGTATT---TA
gi|15                         :                                                                                        tttgttatagaaataaaaaaaaaAAGTGGCTTTACAA-------TA-T-TT---TTGCACTGGATATACTTGTATTTACAAAACCTCAGCTCTCTAAA-TCACGATTGT-------------------T-----AA-----
gi|5                          :                                                                                                                                                               tTGCATAAAA--TCC-GGCTCCCTAAA-TCGTGTTTGTAAACAAGATGTTTGCGAAAC-----AAATGCCTACGCATTTCATAGGACAGTCAGG-----------------------A-----A----------A---------------GTATGTCAAAAGCATTCAGCAT---TT--CGACTATAGGTTAA----TGATGAT-TTAATTTA-GG---AAACA--AATAGAGAAC--A---AACAGAATTTTCG--TTG----AAAAGGCTTc
gi|10                         :                                                                                                                                                     acagggtccacttcataatA--TCC-GACTCCCAAAA-TCGTGTTTGT-------------------C-----AA-----CATGCTTCTTGTAG-----ACAGG-----------------------G-----A----------A---C
gi|10                         :                                                                                                                                                                                                                                                 at-----CCAGG-----------------------ACTTTTA----------A---AAA---------GTATGTTAAAAGCATTCAATAT---TT--TGA-TAcacaagcagaggtgagaacaccaggacttttaaaaagtatgttaaaagcattcaatattttgatagcat
gi|20                         :                                                                                                                                                                                                                                 atatccgactcccaaaatcgtgtttgtcaacatgcttcttgtagacagggaaccacaagcagaggtgagaacaAT---------GTATGTCAAAAGCATTCAACAT---Tgcat
gi|4                          :                                                                                                                                                                                                                                                                                               agccaagacaccacaatggatagaactctgaaAGCATTCAACAG---TT--CGA-CGTGTGTCAACTGTTGAT--TATAACTTAAGGGAGCAAGCAC------------AA---AG-AAATTTTC-G--TTG----AAAAGGTTTTTTCCCATC----------GAAGCC--ATCA-GCTTTG-TAACTGAGCCACGT----ATGA----TGTGA--ACCAGGGTTCGTGCCTTGTTTTGAAAATCAAAAGTTTAGATCTCTCAAA-----------TACATCTTTGCATCAGGATTGTTT----T-----TGCGTTTT
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATATGTAAGCA--AG-GCTTGTGGTTCATTCTAAAATTAAAA-GTTTGGATGTCTCAAACACATC---TGTACATacaaggatcaaatgctatataat
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gAA--GTTTAAATGTCTCAAATACTTT-----------TTTACATCAG---TTTTAGAAATACAGGTTTGT
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  taTACATCTTTGCGTCAG---TTTTTGAAAT-----TTAGGCTTGTG--------TCTACATTTTATACGAATCAAATACTATTATcgccatgttttacacaaatgaaatactattgata
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): AGGGAGCAAGCGCTGAAGAACACAACATTTTCGTTGTAAAGGATTTGGTGGGTTTTTTTTTTACGAAACCGTTACCATTGTAGTTCAATCACTTGACATGTTAACATAAACAGGATTTGTGGCCTCTTTTGAAAAGAAAAAAAGTTAAGA
Unaligned ( gi|9 ): CTGTGAACGTAAACAGGGCTTGTGTCTTCTTCTGAAAATGAAAAGTTCTCAACTACATCTTGTTACGTCAGTTTATGAAATTTAGCTTTGTTGATATCATATGTTTTACACAAATCAAATGCAATCATATCAA
Unaligned ( gi|11 ): TCTACAATCGAAGCCTTCAATTTTGGCGCAATGTTGATAGTTGGGCTCGGGTGTTACCTTGAAAACGTAAAATATAGATTTCTTCAATACATCTTTACGAGAATTTCACAAATTTGCGTTT
Unaligned ( gi|12 ): TTATTGAACATAGCTCAAATGCTTGTCATCAACCAAGAAAGCACACAAGGGGGAAAGAACACCAAGATTTCTAAAAATTGTGTCAAAACATTCAACATTTC
Unaligned ( gi|14 ): TTTCTAAAACATGTCAAAGACATTCAAACGGTTTCAAACATATCATTTAATGATAAAACTATCCTAGAAGCCAGCACAAGAATATACT
Unaligned ( gi|17 ): CATCAGTTTTTTTTAATTTAGATTTGTTGCTATGTTTTAAATGATTTAAATGCTTTGTGAATTCATAATA
Unaligned ( gi|19 ): ATGTTTTGTATTTACTAGTTAGAATTCTGCTCCGCAAGTTGTGTTTGTCAACACGCTTGT






Alignments
lowQualScore                  :                                                                                                                                                                                 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                             
lowQualScore                  :                    444444444444444444444      1  1                333333333             1                            1       88888888888888                                     1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                         111             555555555555555555      22            66666666666666666  1111                  44444444444        33333        3333333     11111   11111          8888888888888888888888888888                           1111  111                77777777777777                              22222   44444444444444444                             
lowQualScore                  :       1  888       999999999999999999999  1   0  0     1   3  777 222222222      99  1  6  1       5    66  5    888 1       99999999999999  5  5        1   5   66     5       5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555                         111  6    3     111111111111111111      22  6         55555555555555555  3333 1 1        4     77777777777        33333  7     2222222  1  11111   11111          2222222222222222222222222222  77        1  66  1     1 1111  333   3    0   5   11111111111111        99           55       00000   00000000000000000  1      3              0    
lowQualScore                  :       .  ...       .....................  .   .  .     .   .  ... .........      ..  .  .  .       .    ..  .    ... .       ..............  .  .        .   .   ..     .       .................................................................................................                         ...  .    .     ..................      ..  .         .................  .... . .        .     ...........        .....  .     .......  .  .....   .....          ............................  ..        .  ..  .     . ....  ...   .    .   .   ..............        ..           ..       .....   .................  .      .              .    
lowQualScore                  :       0  333       777777777777777777777  0   0  8     0   8  666 666666666      88  8  2  0       7    77  0    888 6       66666666666666  0  0        0   0   99     0       2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222                         777  7    2     666666666666666666      55  7         44444444444444444  0000 0 0        0     55555555555        33333  0     5555555  2  22222   00000          4444444444444444444444444444  99        0  77  4     0 8888  888   4    7   7   33333333333333        22           55       55555   44444444444444444  4      0              8    
consensus                     : GGGCATGGANCGGATTTTTGA-CGAT--ATT----TCGTTACAGAA-ATAAAGATNTTTTATGAATTT---AATGGTGGAT-TAANAAATANTTTTACA-CAGGA-TA-TACT---TCGTATTTA-TA---GT-CATA-AA-TC-CGGCTCCCNAAA-TCG--TGTTT-GTCAACA------------------------CGCTTNTCGTATG-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTCAACATTTC---GA-TATACGTTAA-TG---AT-A--T--ATCAATTTA--GG-AGCAAGCAC-AGTA-GAA-AT-----AA-A--AAATTTTCGTTGNAAAGG-----------CTTTTTCC-----CATCGAAG-------CCGTC-AGCTTTG-TAGTTGAGCCACGT----GTG-AATATGTNAAC---A----CAG--GGCTCGTGCCTTNTTTTGAAAAT-G-AAA---GTTTAGATGTCT-CAAA-AC------T---TACATCTT--TGCGTCAGTTTTTGAAATTT-AGNTTTG----TN--------TC-TACGTTTTACACGAATCAAATGCTATTAT
Reference ( family-1585 )     : GGGCATNGANCGGATTTTTGATCGGT--ATT----TCGTTACNGAA-ATNAAGATNTTTTATGAATTT---AATGGTGGAT-TAAAAAGTANTTTTACA-CAGGN-TA-TACT---TCGTATTTA-TAC-CGTACATA-AA-TC-CGGCTCCCNAAA-TCG--TGTTT-GTCAACA------------------------CGCTTNTCGTANN-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTCAACATTTC---GA-TATACGTCAACTG---AT-A--T--ATNAATTTA--GG-AGCAAGCAC-AGTA-GAA-A------AA-A--ANANTTTCGTTGAAAAGG-----------CTTTTTCC-----CATCGAAG-------CCATC-AGCTTTG-TAACTGAGCCACGT----ATG-AATATGTGAGC---AC---CAG--GGCTCGTGNCTCGTTCTGAAANT-N-AAA---GTTTAGATGTCT-CAAACAC------TC--TACATCTT--TGCGTCAGTTTTTGAAATTT-CGTCTTG----TG--------TC-TACATTTTATACGAATCAAATACTATTAT
gi|1                          : GGGCATGGACAAGATCTTGGATCGAT----------CG--ACTGAA-AT---GATCTTTTATGAATTT---AATGGTGGAT-TAAAAAATAGTTTTACA-AAGAT-TA-TACT---TGGTACTTA-TACACGTGCATACAA-CC-TGGCTCCCTAAA-TCA--TGTTT-GTCAATA------------------------GGCTTCTCATATC-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTCAATATTTT---GA-TACACGTCTA-TG---AT-A--T--ATCAATTTAT-GG-ATCAAGCATGAATA-AGA-ATT----AA-AGCAAAGCTTTGTTGTAAAAG-----------CTTCTCCCCCCCTCCCCAAAAAAAAACCCCATCAAG---TGATAGTTTAGTCACGTGACAATGAAATATATAAA----------AG--TGATTGTACCTTGCTTTAAAAAT-C--AA---GTTTAGGTGTCT-CAAATACATTATATG--TACATCTT--GGCATCAGTGTTTGAAATTT-TGTTTTT----TGTTGTTTTTTT-TAAATTTCACCTGAATCAAATGTT-TTAT
gi|10                         :                                                                                                                                             A-TC-CGACTCCCAAAA-TCG--TGTTT-GTCAACA------------------------TGCTTCTTGTAGA-----CAGGGA----------AC--------------------------ca
gi|10                         :                                                                                                                                                                                                                                                                       at---------GTATGTTAAAAGCATTCAATATTTT---GA-TAcacaagcagaggtgagaacaccaggacttttaaaaagtatgttaaaagcattcaatattttgatagcat
gi|11                         :                                                                                                                                                                                                                                                                                                                                          atatccgactcccaaaatcgtgtttgtcaacatgcttcttgtagacagggaaccacaagcagaggtgagaacaccaggacttttaaaaaATCGAAG-------CCTTC-AATTTTG------GCGCAATGT-----TG-A-TA-GTT-------------G--GGCTCGGGTGTTACCTTGAAAAC-GTAAA---ATATAGATTTCTTCAA--------------TACATCTT--TACGAGAATTTCACAAATTTGCGTTTgcat
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tctaca-AAA---GTTTAAATGTCT-CAAATAC------TT--T-----TT--TACATCAGTTTTAGAAATAC-AGGTTTG----TC--------GC-CATGTTTTACACAAATGAAATACTATT
gi|15                         :                                                                           tGTGGCT-TTACAA-TATTTTTGCA-CTGGA-TA-TACT---T-GTATTTA-CA---------A-AA-CCTCAGCTCTCTAAA-TCA--CGATT-GTTAACgata
gi|16                         :                            taaT----TTGTTATAGAA-ATAAAAAAAAAT-ATGAAT-----AA--GTGGAT-TAAAAAGTACTTTTACA-CAGGA-CA-TACT---TTGTATTTA-
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATATGTAAGC---A------A--GGCTTGTGGTTCATTCTAAAATT-A-AAA---GTTTGGATGTCT-CAAACACA-----TCTGTACAT
gi|19                         :                                                                                                           gA-TGTT---TTGTATTTACTA---GT---TAGAA-TT-CTGCTCCGCAAG-TTG--TGTTT-GTCAACA------------------------CGCTTGT
gi|2                          : GAGCATTGATTGGATTTTTGA-CAAT--ATT----TCGTTACAGAA-ATAAAGATCTTTTATGA-TTT---AA--GTGGAT--GAAAACTATTTTTACG-CAGGA-TA-TACT---TTGCATTTA-----CGTA-A-A-AA-TC-CAGCTCCCCAAACTTA--TGTTT-GTCAACA------------------------CGCTTGTCCTATA-----CAGGTA----------ACCTCATGCGGAGGTGAGAACAAAGTACAT---------GTATATGTAAAGCATTCAAC------------ATAAGTTAA-TG---AT-AGGTAAATCAATTTA--GG-GGCAAGC
gi|20                         :                                                                                                                                                                                                                       aaagaaaatggatttaatttat--------------------------AT---------GTATGTCAAAAGCATTCAACATTtaaaag
gi|3                          :                       agccaagacaccacaatggatagaactctgaaTTTTTTAT---TTTCTCAATG-TGAATAGAAGAAATCATTTTTCAGCAGATATAATACT---TCATATTTA-TA--------TA-AA-TC-TGGCTCCCAAAA-TTGTGTGTCTAGCTAAGA------------------------AAC----CATATG------AGGAGGTGGAACGCTAC--------------------------ATTTCTAAAACGTATGTCAAAAGCATCCAACATTTCCAACA-TCTACATTAA-TG---AT-A--------AATCTAT-GG-AGCAAGCACAAGTACGAA-ATAACTGAA-A--ATAGCTTTATT
gi|4                          :                                                                                                                                                                                                                                                                                            AGCATTCAACAGTTC---GA-CGTGTGTCAACTGTTGAT----T--AT-AACTTAAGGG-AGCAAGCAC-A---------------AA-G--AAATTTTCGTTGAAAAGG-----------TTTTTTCC-----CATCGAAG-------CCATC-AGCTTTG-TAACTGAGCCACGT----ATG----ATGTGA-----AC---CAG--GGTTCGTGCCTTGTTTTGAAAATCA-AAA---GTTTAGATCTCT-CAAA-------------TACATCTT--TGCATCAG-----GA----------TTG----TT--------TT-TGCGTTTTACAAGGATCAAATGCTATttgcttttaaaagc
gi|5                          :                                                                                                   A-CAGGG-TC-CACT---TCATA---A-T-----TGCATA-AAATC-CGGCTCCCTAAA-TCG--TGTTT-GTAAACAAGATGTTTGCGAAACAAATGCCTACGCATTTCATAGGACAGTCAGGAA----------A--------------------------------------GTATGTCAAAAGCATTCAGCATTTC---GACTATAGGTTAA-TG---ATGA--T---TTAATTTA--GGAAACAA--AT-AG-A-GAACA------AACA--GAATTTTCGTTGAAAAGG-----------CTTataat
gi|6                          : GGACATGGAGCCGATTTTT---TGGTTAATTGAAATTG--ACAGTATATGAAGATATTTCATAGAT-----AA--GTGGGC-TAATAA-TATTTTTACA-CACGA-TA-TGCTAAAT-GTATTTA---------CATATAA-TT-CAGTTCCCAAAA-TTT--TGTTT-GTCAACA------------------------TGTTT
gi|7                          :                                                                                                                                                                                                                                                                                                                                              taaag--GG-AGCAAGCGC-TGAA-GAA-C------AC-A--ACATTTTCGTTGTAAAGGATTTGGTGGGTTTTTTTTT-----TA-CGAAA-------CCGTT-ACCATTG-TAGTTCAATCACTT----G----ACATGTTAAC---ATAAACAG--GATTTGTGGCCTCTTTTGAAAAG-A-AAAAAAGTTAAGA
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                            ag-TAATTGAGCCATGT----G----ACACGTCAAC---AT---AAGCAGACTCGTGCATCTTTTAGAAAAT-G-CAA---A-------GTCT-TAAA-------------TACATCTT--TGCGTCAGTTTTTGAAATTT-AGGCTTG----TG--------TC-TACATTTTATACGAATCAAATACTATTAT
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGTGAACGTAAA---CAG--GGCTTGTGTCTTCTTCTGAAAAT-G-AAAA--GTT-------CT-CAA-----------C--TACATCTTGTTACGTCAGTTTATGAAATTT-AGCTTTGTTGATA--------TCATATGTTTTACACAAATCAAATGCAATCATatgatca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTATTGAACATAGCTCAAATGCTTGTCATCAACCAAGAAAGCACACAAGGGGGAAAGAACACCAAGATTTCTAAAAATTGTGTCAAAACATTCAACATTTC
Unaligned ( gi|14 ): TTTCTAAAACATGTCAAAGACATTCAAACGGTTTCAAACATATCATTTAATGATAAAACTATCCTAGAAGCCAGCACAAGAATATACT
Unaligned ( gi|17 ): CATCAGTTTTTTTTAATTTAGATTTGTTGCTATGTTTTAAATGATTTAAATGCTTTGTGAATTCATAATA






Alignments
lowQualScore                  :                                                                                                                                                                              11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                      
lowQualScore                  :                    111    44444444444444      1               11  333333333             1                            1       66666666666666                                  11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                           111               1111    333333333         11          55555555555555555555555                  44444444444        33333        3333333     11111                  55555555555555555555555555  111                     1111                   777777777777                                 111    333333                                  
lowQualScore                  :          888       999    66666666666666      0  7     1   3  11  222222222      6   7  3  1       5    5   5    888 1       44444444444444  5  5        1   5               66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666                 5   5     555  5    9999    4444    333333333  44  1  33  0       55555555555555555555555            1     77777777777        33333  7     2222222  4  11111   88 1           00000000000000000000000000  000       1   1         7777     5     0   5   999999999999       77            22  5     0 000    333333 1  6  2                     0    
lowQualScore                  :          ...       ...    ..............      .  .     .   .  ..  .........      .   .  .  .       .    .   .    ... .       ..............  .  .        .   .               .....................................................................................................                 .   .     ...  .    ....    ....    .........  ..  .  ..  .       .......................            .     ...........        .....  .     .......  .  .....   .. .           ..........................  ...       .   .         ....     .     .   .   ............       ..            ..  .     . ...    ...... .  .  .                     .    
lowQualScore                  :          333       000    44444444444444      0  0     0   8  88  666666666      7   5  8  0       7    7   0    888 6       99999999999999  0  0        0   0               55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555                 0   0     777  7    7777    2222    777777777  55  7  66  1       11111111111111111111111            0     55555555555        33333  0     5555555  2  22222   88 4           11111111111111111111111111  000       7   0         6666     1     7   7   111111111111       99            11  7     3 999    333333 0  7  2                     8    
consensus                     : GGGCATGGANCGGATTTTTGA-CGAT--ATT----TCGTTACAGAA-ATAAAGATNTTTTATGAATTT---AATGGTGGAT-TAANAAATANTTTTACA-CAGG-ATA-TACT---TCGTATTTA-TA---GT-CATA-AA-TC-CGGCTCCCNAAA-TCGTGTTTGTCAACA------------------------CGCTTN----TCGTATG-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTTC---GA-TATA-CG-TTAA----TGAT-A----T--ATCAATTTA--GGAGCAAGCAC-AGT-A-GA-A-ATAA---A--AAATTTTCGTTGNAAAGG-----------CTTTTTCC-----CATCGAAG-------CCGTC-AGCTTTG-TAGTTGAGCCACGTG----TG-AACATGTNAAC----A-AGG---GCTCGTGCCTTNTTTTGAAAAT-G-AAAGTTTAGATGTCT-CAAA-----------TACATCT--TTGCGTCAGTTTTTGA-AATTTAG--GTTTG------TNTC-TACGTTTTACACGAATCAAATGCTATTAT
Reference ( family-1585 )     : GGGCATGGANCGGATTTTTGA-CGAT--ATT----TCGTTACAGAA-ATAAAGATNTTTTATGAATTT---AATGGTGGAT-TAANAAATANTTTTACA-CAGG-ATA-TACT---TCGTATTTA-TA---GT-CATA-AA-TC-CGGCTCCCNAAA-TCGTGTTTGTCAACA------------------------CGCTTN----TCGTATG-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTTC---GA-TATA-CG-TTAA----TGAT-A----T--ATCAATTTA--GGAGCAAGCAC-AGT-A-GA-A-ATAA---A--AAATTTTCGTTGNAAAGG-----------CTTTTTCC-----CATCGAAG-------CCGTC-AGCTTTG-TAGTTGAGCCACGTG----TG-AATATGTNAAC----ACAGG---GCTCGTGCCTTNTTTTGAAAAT-G-AAAGTTTAGATGTCT-CAAA---ACT-----TACATCT--TTGCGTCAGTTTTTGA-AATTTAG--NTTTG------TNTC-TACGTTTTACACGAATCAAATGCTATTAT
gi|1                          : GGGCATGGACAAGATCTTGGATCGAT----------CG--ACTGAA-AT---GATCTTTTATGAATTT---AATGGTGGAT-TAAAAAATAGTTTTACA-AAGA-TTA-TACT---TGGTACTTA-TACACGTGCATACAA-CC-TGGCTCCCTAAA-TCATGTTTGTCAATA------------------------GGCTTC----TCATATC-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAT-ATTTT---GA-TACA-CG-TCTA----TGAT-A----T--ATCAATTTAT-GGATCAAGCATGAATAA-GA-A-TTAA---AGCAAAGCTTTGTTGTAAAAG-----------CTTCTCCCCCCCTCCCCAAAAAAAAACCCCATCAAG---TGATAGTTTAGTCACGTGACAATGAAATATATAAA-------AGT---GATTGTACCTTGCTTTAAAAAT---CAAGTTTAGGTGTCT-CAAATACATTATATGTACATCT--TGGCATCAGTGTTTGA-AATTTTGTTTTTTGTTGTTTTTTT-TAAATTTCACCTGAATCAAATGTT-TTAT
gi|10                         :                                                                                                                                             A-TC-CGACTCCCAAAA-TCGTGTTTGTCAACA------------------------TGCTTC----TTGTAGA-----CAGGGA----------AC--------------------------ca
gi|10                         :                                                                                                                                                                                                                                                                        at---------GTATGTTAAAAGCATTC-AAT-ATTTT---GA-TAcacaagcagaggtgagaacaccaggacttttaaaaagtatgttaaaagcattcaatattttgatagcat
gi|11                         :                                                                                                                                                                                                                                                                                                                                               atatccgactcccaaaatcgtgtttgtcaacatgcttcttgtagacagggaaccacaagcagaggtgagaacaccaggacttttaaaaaATCGAAG-------CCTTC-AATTTTG------GCGCAATGT-----TG-A-TA-GTT----------GG---GCTCGGGTGTTACCTTGAAAAC-GTAAAATATAGATTTCTTCAA------------TACATCT--TTACGAGAATTTCACA-AATTTGC--GTTTgcat
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   tctaca-AAAGTTTAAATGTCT-CAAA-----------TACTTTT--TTACATCAGTTTTAGA-AATACAG--GTTTG------TCGC-CATGTTTTACACAAATGAAATACTATT
gi|14                         :                                                                                                                                                                                                                                                                                    tATGTCAAAGACATTCAAACGGTTTCA--AA-CATATCATTTAA----TGAT-AAAACT--ATC---CTA--GAAGCCAGCAC-A---A-GA-ATATAgata
gi|15                         :                                                                  tttctaaaacGTGGCT-TTACAA-TATTTTTGCA-CTGG-ATA-TACT---T-GTATTTA-CA---------A-AA-CCTCAGCTCTCTAAA-TCACGATTGTTAACct
gi|16                         :                            taaT----TTGTTATAGAA-ATAAAAAAAAAT-ATGAAT-----AA--GTGGAT-TAAAAAGTACTTTTACA-CAGG-ACA-TACT---TTGTATTTA-
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATCAGTTTTTTTTAATTTAG--ATTTG------TTGC-TATGTTTTAAATGATTTAAATGCT
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATATGTAAGC----A--AG---GCTTGTGGTTCATTCTAAAATT-A-AAAGTTTGGATGTCT-CAAA-----------CACATCT--GTACATttgtgaattcataata
gi|19                         :                                                                                                           gA-TGTT---TTGTATTTACTA---GT-TA-G-AA-TT-CTGCTCCGCAAG-TTGTGTTTGTCAACA------------------------CGCTTG----T
gi|2                          : GAGCATTGATTGGATTTTTGA-CAAT--ATT----TCGTTACAGAA-ATAAAGATCTTTTATG-ATTT---AA--GTGGAT-GAA-AACTATTTTTACG-CAGG-ATA-TACT---TTGCATTTA-C----GT-AA-A-AA-TC-CAGCTCCCCAAACTTATGTTTGTCAACA------------------------CGCTTG----TCCTATA-----CAGGTA----------ACCTCATGCGGAGGTGAGAACAAAGTACAT---------GTATATGTAAAGCATTC-AAC-------------ATA-AG-TTAA----TGAT-AGG--TAAATCAATTTA--GGGGCAAGC
gi|20                         :                                                                                                                                                                                                                        aaagaaaatggatttaatttat--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTtaaaag
gi|3                          :                       agccaagacaccacaatggatagaactctgaaTTTTTTAT---TTTCTCAATG-TGAATAGAAGAAATCATTTTTCAGCAGATATAATACT---TCATATTTA-TA--------TA-AA-TC-TGGCTCCCAAAA-TTGTGT--GTCTA---------------------------GCTAAGAAACCATATG------AGGAGGTGGAACGCTAC--------------------------ATTTCTAAAACGTATGTCAAAAGCATCC-AAC-ATTTCCAACA-TCTA-CA-TTAA----TGAT-A----A--ATCTAT-----GGAGCAAGCACAAGT-ACGA-A-ATAACTGA--AAAT
gi|4                          :                                                                                                                                                                                                                                                                                             AGCATTC-AAC-AGTTC---GA-CGTG-TG-TCAACTGTTGAT------T--AT-AACTTAAGGGAGCAAGCAC-A------------AA---G--AAATTTTCGTTGAAAAGG-----------TTTTTTCC-----CATCGAAG-------CCATC-AGCTTTG-TAACTGAGCCACGTA----TG----ATGTGAAC-----CAGG---GTTCGTGCCTTGTTTTGAAAATCA-AAAGTTTAGATCTCT-CAAA-----------TACATCT--TTGCATCAG-----GA------------TTG------TTTT-TGCGTTTTACAAGGATCAAATGCTATagctttattttgcttttaaaagc
gi|5                          :                                                                                                   A-CAGG-GTC-CACT---TCATAATTG---------CATA-AAATC-CGGCTCCCTAAA-TCGTGTTTGTAAACAAGATGTTTGCGAAACAAATGCCTACGCATT----TCATAGGACAGTCAGGAA----------A--------------------------------------GTATGTCAAAAGCATTC-AGC-ATTTC---GACTATA-GG-TTAA----TGATGA----T---TTAATTTA--GG---AAACA--AAT-A-GAGA-ACAAAC-A--GAATTTTCGTTGAAAAGG-----------CTTataat
gi|6                          : GGACATGGAGCCGATTTTT---TGGTTAATTGAAATTG--ACAGTATATGAAGATATTTCATAGAT-----AA--GTGGGC-TAATAA-TATTTTTACA-CACG-ATA-TGCTAAAT-GTATTTA---------CATATAA-TT-CAGTTCCCAAAA-TTTTGTTTGTCAACA------------------------TGTTT
gi|7                          :                                                                                                                                                                                                                                                                                                                                                     taaag--GGAGCAAGCGC-TGA-A-GA-A--CAC---A--ACATTTTCGTTGTAAAGGATTTGGTGGGTTTTTTTTT-----TA-CGAAA-------CCGTT-ACCATTG-TAGTTCAATCACTTG--------ACATGTTAACATAAACAGG---ATTTGTGGCCTCTTTTGAAAA--G-AAA
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ag-TAATTGAGCCATGTG--------ACACGTCAAC----ATAAGCAGACTCGTGCATCTTTTAGAAAAT-G-CAAA-------GTCT-TAAA-----------TACATCT--TTGCGTCAGTTTTTGA-AATTTAG--GCTTG------TGTC-TACATTTTATACGAATCAAATACTATTATaaaagttaaga
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TG----TG-AAC--GTAAAC----A--GG---GCTTGTGTCTTCTTCTGAAAAT-GAAAAGT-------TCT-CAA------C-----TACATCTTGTTACGTCAGTTTATGA-AATTTAG--CTTTGTTGA--TATCATATGTTTTACACAAATCAAATGCAATCATatgatca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTATTGAACATAGCTCAAATGCTTGTCATCAACCAAGAAAGCACACAAGGGGGAAAGAACACCAAGATTTCTAAAAATTGTGTCAAAACATTCAACATTTC






Alignments
lowQualScore                  :                                                                                                                                                                              11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                         
lowQualScore                  :                    111    44444444444444      1               11  333333333             1                            1       66666666666666                                  11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                           111               1111    333333333         11          55555555555555555555555                  44444444444        33333        3333333     11111                  3333333333333333333333333                         1111                    22222222222                                 222222222     1111                                  
lowQualScore                  :          888       999    66666666666666      0  7     1   3  11  222222222      6   7  3  1       5    5   5    888 1       44444444444444  5  5        1   5               66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666                 5   5     555  5    9999    4444    333333333  44  1  33  0       55555555555555555555555            1     77777777777        33333  7     2222222  4  11111   88 1           7777777777777777777777777 77 1      1   1         2222   5   1    0       77777777777        77           22  5     0 222222222     4444 1  6  2                     0    
lowQualScore                  :          ...       ...    ..............      .  .     .   .  ..  .........      .   .  .  .       .    .   .    ... .       ..............  .  .        .   .               .....................................................................................................                 .   .     ...  .    ....    ....    .........  ..  .  ..  .       .......................            .     ...........        .....  .     .......  .  .....   .. .           ......................... .. .      .   .         ....   .   .    .       ...........        ..           ..  .     . .........     .... .  .  .                     .    
lowQualScore                  :          333       000    44444444444444      0  0     0   8  88  666666666      7   5  8  0       7    7   0    888 6       99999999999999  0  0        0   0               55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555                 0   0     777  7    7777    2222    777777777  55  7  66  1       11111111111111111111111            0     55555555555        33333  0     5555555  2  22222   88 4           4444444444444444444444444 99 7      7   0         6666   0   4    7       11111111111        99           11  7     3 999999999     2222 0  7  2                     8    
consensus                     : GGGCATGGANCGGATTTTTGA-CGAT--ATT----TCGTTACAGAA-ATAAAGATNTTTTATGAATTT---AATGGTGGAT-TAANAAATANTTTTACA-CAGG-ATA-TACT---TCGTATTTA-TA---GT-CATA-AA-TC-CGGCTCCCNAAA-TCGTGTTTGTCAACA------------------------CGCTTN----TCGTATG-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTTC---GA-TATA-CG-TTAA----TGAT-A----T--ATCAATTTA--GGAGCAAGCAC-AGT-A-GA-A-ATAA---A--AAATTTTCGTTGNAAAGG-----------CTTTTTCC-----CATCGAAG-------CCGTC-AGCTTTG-TAGTTGAGCCACGTG----TGAACATGTNAACA-----AG--GGCTCGTGCCTTNTTTTGAAAAT-G-AAA-GTTTAGATGTCTCAAA-----------TACATCTT--TGCGTCAGTTTTTGA-AATTTAG---------GTTTG----TNTC-TACGTTTTACACGAATCAAATGCTATTAT
Reference ( family-1585 )     : GGGCATGGANCGGATTTTTGA-CGAT--ATT----TCGTTACAGAA-ATAAAGATNTTTTATGAATTT---AATGGTGGAT-TAANAAATANTTTTACA-CAGG-ATA-TACT---TCGTATTTA-TA---GT-CATA-AA-TC-CGGCTCCCNAAA-TCGTGTTTGTCAACA------------------------CGCTTN----TCGTATG-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTTC---GA-TATA-CG-TTAA----TGAT-A----T--ATCAATTTA--GGAGCAAGCAC-AGT-A-GA-A-ATAA---A--AAATTTTCGTTGNAAAGG-----------CTTTTTCC-----CATCGAAG-------CCGTC-AGCTTTG-TAGTTGAGCCACGTG----TGAACATGTNAACA-----AG--GGCTCGTGCCTTNTTTTGAAAAT-G-AAA-GTTTAGATGTCTCAAA-----------TACATCTT--TGCGTCAGTTTTTGA-AATTTAG---------GTTTG----TNTC-TACGTTTTACACGAATCAAATGCTATTAT
gi|1                          : GGGCATGGACAAGATCTTGGATCGAT----------CG--ACTGAA-AT---GATCTTTTATGAATTT---AATGGTGGAT-TAAAAAATAGTTTTACA-AAGA-TTA-TACT---TGGTACTTA-TACACGTGCATACAA-CC-TGGCTCCCTAAA-TCATGTTTGTCAATA------------------------GGCTTC----TCATATC-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAT-ATTTT---GA-TACA-CG-TCTA----TGAT-A----T--ATCAATTTAT-GGATCAAGCATGAATAA-GA-A-TTAA---AGCAAAGCTTTGTTGTAAAAG-----------CTTCTCCCCCCCTCCCCAAAAAAAAACCCCATCAAG---TGATAGTTTAGTCACGTGACAATGAA-ATATATAAA-----AG--TGATTGTACCTTGCTTTAAAAAT---CAA-GTTTAGGTGTCTCAAATACATTATATGTACATCTT--GGCATCAGTGTTTGA-AATTTTGTTTTTTGTTGTTT-----TTTT-TAAATTTCACCTGAATCAAATGTT-TTAT
gi|10                         :                                                                                                                                             A-TC-CGACTCCCAAAA-TCGTGTTTGTCAACA------------------------TGCTTC----TTGTAGA-----CAGGGA----------AC--------------------------ca
gi|10                         :                                                                                                                                                                                                                                                                        at---------GTATGTTAAAAGCATTC-AAT-ATTTT---GA-TAcacaagcagaggtgagaacaccaggacttttaaaaagtatgttaaaagcattcaatattttgatagcat
gi|11                         :                                                                                                                                                                                                                                                                                                                                               atatccgactcccaaaatcgtgtttgtcaacatgcttcttgtagacagggaaccacaagcagaggtgagaacaccaggacttttaaaaaATCGAAG-------CCTTC-AATTTTG------GCGCAATGT-----TGA-TA-GTT----------G--GGCTCGGGTGTTACCTTGAAAAC-GTAAA-ATATAGATTTCTTCAA-----------TACATCTT--TACGAGAATTTCACA-AATTTGC---------GTTTgcat
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 tctaca-AAA-GTTTAAATGTCTCAAA-----------TACTTTTT--TACATCAGTTTTAGA-AATACAG---------GTTTG----TCGC-CATGTTTTACACAAATGAAATACTATT
gi|14                         :                                                                                                                                                                                                                                                                                    tATGTCAAAGACATTCAAACGGTTTCA--AA-CATATCATTTAA----TGAT-AAAACT--ATC---CTA--GAAGCCAGCAC-A---A-GA-ATATAgata
gi|15                         :                                                                  tttctaaaacGTGGCT-TTACAA-TATTTTTGCA-CTGG-ATA-TACT---T-GTATTTA-CA---------A-AA-CCTCAGCTCTCTAAA-TCACGATTGTTAACct
gi|16                         :                            taaT----TTGTTATAGAA-ATAAAAAAAAAT-ATGAAT-----AA--GTGGAT-TAAAAAGTACTTTTACA-CAGG-ACA-TACT---TTGTATTTA-
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CATCAGTTTTTTTTAATTTAG---------ATTTG----TTGC-TATGTTTTAAATGATTTAAATGCT
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATATGTAAGCA-----AG--G-CTTGTGGTTCATTCTAAAATT-A-AAA-GTTTGGATGTCTCAAA-----------CACATCTG--TACATttgtgaattcataata
gi|19                         :                                                                                                           gA-TGTT---TTGTATTTACTA---GT-TA-G-AA-TT-CTGCTCCGCAAG-TTGTGTTTGTCAACA------------------------CGCTTG----T
gi|2                          : GAGCATTGATTGGATTTTTGA-CAAT--ATT----TCGTTACAGAA-ATAAAGATCTTTTATG-ATTT---AA--GTGGAT-GAA-AACTATTTTTACG-CAGG-ATA-TACT---TTGCATTTA-C----GT-AA-A-AA-TC-CAGCTCCCCAAACTTATGTTTGTCAACA------------------------CGCTTG----TCCTATA-----CAGGTA----------ACCTCATGCGGAGGTGAGAACAAAGTACAT---------GTATATGTAAAGCATTC-AAC-------------ATA-AG-TTAA----TGAT-AGG--TAAATCAATTTA--GGGGCAAGC
gi|20                         :                                                                                                                                                                                                                        aaagaaaatggatttaatttat--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTtaaaag
gi|3                          :                       agccaagacaccacaatggatagaactctgaaTTTTTTAT---TTTCTCAATG-TGAATAGAAGAAATCATTTTTCAGCAGATATAATACT---TCATATTTA-TA--------TA-AA-TC-TGGCTCCCAAAA-TTGTGT--GTCTA---------------------------GCTAAGAAACCATATG------AGGAGGTGGAACGCTAC--------------------------ATTTCTAAAACGTATGTCAAAAGCATCC-AAC-ATTTCCAACA-TCTA-CA-TTAA----TGAT-A----A--ATCTAT-----GGAGCAAGCACAAGT-ACGA-A-ATAACTGA--AAAT
gi|4                          :                                                                                                                                                                                                                                                                                             AGCATTC-AAC-AGTTC---GA-CGTG-TG-TCAACTGTTGAT------T--AT-AACTTAAGGGAGCAAGCAC-A------------AA---G--AAATTTTCGTTGAAAAGG-----------TTTTTTCC-----CATCGAAG-------CCATC-AGCTTTG-TAACTGAGCCACGTA----TG---ATGTGAACC-----AG--GGTTCGTGCCTTGTTTTGAAAATCA-AAA-GTTTAGATCTCTCAAA-----------TACATCTT--TGCATCAG-----GA-------------------TTG----TTTT-TGCGTTTTACAAGGATCAAATGCTATagctttattttgcttttaaaagc
gi|5                          :                                                                                                   A-CAGG-GTC-CACT---TCATAATTG---------CATA-AAATC-CGGCTCCCTAAA-TCGTGTTTGTAAACAAGATGTTTGCGAAACAAATGCCTACGCATT----TCATAGGACAGTCAGGAA----------A--------------------------------------GTATGTCAAAAGCATTC-AGC-ATTTC---GACTATA-GG-TTAA----TGATGA----T---TTAATTTA--GG---AAACA--AAT-A-GAGA-ACAAAC-A--GAATTTTCGTTGAAAAGG-----------CTTataat
gi|6                          : GGACATGGAGCCGATTTTT---TGGTTAATTGAAATTG--ACAGTATATGAAGATATTTCATAGAT-----AA--GTGGGC-TAATAA-TATTTTTACA-CACG-ATA-TGCTAAAT-GTATTTA---------CATATAA-TT-CAGTTCCCAAAA-TTTTGTTTGTCAACA------------------------TGTTT
gi|7                          :                                                                                                                                                                                                                                                                                                                                                     taaag--GGAGCAAGCGC-TGA-A-GA-A--CAC---A--ACATTTTCGTTGTAAAGGATTTGGTGGGTTTTTTTTT-----TA-CGAAA-------CCGTT-ACCATTG-TAGTTCAATCACTTG-------ACATGTTAACATAAACAG--GATTTGTGGCCTCTTTTGAAAA--G-AAA-
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ag-TAATTGAGCCATGTG-------ACACGTCAACATA---AGCAGACTCGTGCATCTTTTAGAAAAT-G-CAA-A-------GTCTTAAA-----------TACATCTT--TGCGTCAGTTTTTGA-AATTTAG---------GCTTG----TGTC-TACATTTTATACGAATCAAATACTATTATaaaagttaaga
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TG----TGAAC--GTAAACA------G--GGCTTGTGTCTTCTTCTGAAAAT-G-AAAAGTT-------CTCAAC-----------TACATCTTGTTACGTCAGTTTATGA-AATTTAG---------CTTTGTTGATATCATATGTTTTACACAAATCAAATGCAATCATatgatca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTATTGAACATAGCTCAAATGCTTGTCATCAACCAAGAAAGCACACAAGGGGGAAAGAACACCAAGATTTCTAAAAATTGTGTCAAAACATTCAACATTTC






Alignments
lowQualScore                  :                                                                                                                                                                              11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                         
lowQualScore                  :                    111    44444444444444      1               11  333333333             1                            1       66666666666666                                  11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                           111               1111    333333333         11          55555555555555555555555                  44444444444        33333        3333333     11111                  3333333333333333333333333                         1111                    22222222222                                 222222222     1111                                  
lowQualScore                  :          888       999    66666666666666      0  7     1   3  11  222222222      6   7  3  1       5    5   5    888 1       44444444444444  5  5        1   5               66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666                 5   5     555  5    9999    4444    333333333  44  1  33  0       55555555555555555555555            1     77777777777        33333  7     2222222  4  11111   88 1           7777777777777777777777777 77 1      1   1         2222   5   1    0       77777777777        77           22  5     0 222222222     4444 1  6  2                     0    
lowQualScore                  :          ...       ...    ..............      .  .     .   .  ..  .........      .   .  .  .       .    .   .    ... .       ..............  .  .        .   .               .....................................................................................................                 .   .     ...  .    ....    ....    .........  ..  .  ..  .       .......................            .     ...........        .....  .     .......  .  .....   .. .           ......................... .. .      .   .         ....   .   .    .       ...........        ..           ..  .     . .........     .... .  .  .                     .    
lowQualScore                  :          333       000    44444444444444      0  0     0   8  88  666666666      7   5  8  0       7    7   0    888 6       99999999999999  0  0        0   0               55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555                 0   0     777  7    7777    2222    777777777  55  7  66  1       11111111111111111111111            0     55555555555        33333  0     5555555  2  22222   88 4           4444444444444444444444444 99 7      7   0         6666   0   4    7       11111111111        99           11  7     3 999999999     2222 0  7  2                     8    
consensus                     : GGGCATGGANCGGATTTTTGA-CGAT--ATT----TCGTTACAGAA-ATAAAGATNTTTTATGAATTT---AATGGTGGAT-TAANAAATANTTTTACA-CAGG-ATA-TACT---TCGTATTTA-TA---GT-CATA-AA-TC-CGGCTCCCNAAA-TCGTGTTTGTCAACA------------------------CGCTTN----TCGTATG-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTTC---GA-TATA-CG-TTAA----TGAT-A----T--ATCAATTTA--GGAGCAAGCAC-AGT-A-GA-A-ATAA---A--AAATTTTCGTTGNAAAGG-----------CTTTTTCC-----CATCGAAG-------CCGTC-AGCTTTG-TAGTTGAGCCACGTG----TGAACATGTNAACA-----AG--GGCTCGTGCCTTNTTTTGAAAAT-G-AAA-GTTTAGATGTCTCAAA-----------TACATCTT--TGCGTCAGTTTTTGA-AATTTAG---------GTTTG----TNTC-TACGTTTTACACGAATCAAATGCTATTAT
Reference ( family-1585 )     : GGGCATGGANCGGATTTTTGA-CGAT--ATT----TCGTTACAGAA-ATAAAGATNTTTTATGAATTT---AATGGTGGAT-TAANAAATANTTTTACA-CAGG-ATA-TACT---TCGTATTTA-TA---GT-CATA-AA-TC-CGGCTCCCNAAA-TCGTGTTTGTCAACA------------------------CGCTTN----TCGTATG-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTTC---GA-TATA-CG-TTAA----TGAT-A----T--ATCAATTTA--GGAGCAAGCAC-AGT-A-GA-A-ATAA---A--AAATTTTCGTTGNAAAGG-----------CTTTTTCC-----CATCGAAG-------CCGTC-AGCTTTG-TAGTTGAGCCACGTG----TGAACATGTNAACA-----AG--GGCTCGTGCCTTNTTTTGAAAAT-G-AAA-GTTTAGATGTCTCAAA-----------TACATCTT--TGCGTCAGTTTTTGA-AATTTAG---------GTTTG----TNTC-TACGTTTTACACGAATCAAATGCTATTAT
gi|1                          : GGGCATGGACAAGATCTTGGATCGAT----------CG--ACTGAA-AT---GATCTTTTATGAATTT---AATGGTGGAT-TAAAAAATAGTTTTACA-AAGA-TTA-TACT---TGGTACTTA-TACACGTGCATACAA-CC-TGGCTCCCTAAA-TCATGTTTGTCAATA------------------------GGCTTC----TCATATC-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAT-ATTTT---GA-TACA-CG-TCTA----TGAT-A----T--ATCAATTTAT-GGATCAAGCATGAATAA-GA-A-TTAA---AGCAAAGCTTTGTTGTAAAAG-----------CTTCTCCCCCCCTCCCCAAAAAAAAACCCCATCAAG---TGATAGTTTAGTCACGTGACAATGAA-ATATATAAA-----AG--TGATTGTACCTTGCTTTAAAAAT---CAA-GTTTAGGTGTCTCAAATACATTATATGTACATCTT--GGCATCAGTGTTTGA-AATTTTGTTTTTTGTTGTTT-----TTTT-TAAATTTCACCTGAATCAAATGTT-TTAT
gi|10                         :                                                                                                                                             A-TC-CGACTCCCAAAA-TCGTGTTTGTCAACA------------------------TGCTTC----TTGTAGA-----CAGGGA----------AC--------------------------ca
gi|10                         :                                                                                                                                                                                                                                                                        at---------GTATGTTAAAAGCATTC-AAT-ATTTT---GA-TAcacaagcagaggtgagaacaccaggacttttaaaaagtatgttaaaagcattcaatattttgatagcat
gi|11                         :                                                                                                                                                                                                                                                                                                                                               atatccgactcccaaaatcgtgtttgtcaacatgcttcttgtagacagggaaccacaagcagaggtgagaacaccaggacttttaaaaaATCGAAG-------CCTTC-AATTTTG------GCGCAATGT-----TGA-TA-GTT----------G--GGCTCGGGTGTTACCTTGAAAAC-GTAAA-ATATAGATTTCTTCAA-----------TACATCTT--TACGAGAATTTCACA-AATTTGC---------GTTTgcat
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 tctaca-AAA-GTTTAAATGTCTCAAA-----------TACTTTTT--TACATCAGTTTTAGA-AATACAG---------GTTTG----TCGC-CATGTTTTACACAAATGAAATACTATT
gi|14                         :                                                                                                                                                                                                                                                                                    tATGTCAAAGACATTCAAACGGTTTCA--AA-CATATCATTTAA----TGAT-AAAACT--ATC---CTA--GAAGCCAGCAC-A---A-GA-ATATAgata
gi|15                         :                                                                  tttctaaaacGTGGCT-TTACAA-TATTTTTGCA-CTGG-ATA-TACT---T-GTATTTA-CA---------A-AA-CCTCAGCTCTCTAAA-TCACGATTGTTAACct
gi|16                         :                            taaT----TTGTTATAGAA-ATAAAAAAAAAT-ATGAAT-----AA--GTGGAT-TAAAAAGTACTTTTACA-CAGG-ACA-TACT---TTGTATTTA-
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CATCAGTTTTTTTTAATTTAG---------ATTTG----TTGC-TATGTTTTAAATGATTTAAATGCT
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATATGTAAGCA-----AG--G-CTTGTGGTTCATTCTAAAATT-A-AAA-GTTTGGATGTCTCAAA-----------CACATCTG--TACATttgtgaattcataata
gi|19                         :                                                                                                           gA-TGTT---TTGTATTTACTA---GT-TA-G-AA-TT-CTGCTCCGCAAG-TTGTGTTTGTCAACA------------------------CGCTTG----T
gi|2                          : GAGCATTGATTGGATTTTTGA-CAAT--ATT----TCGTTACAGAA-ATAAAGATCTTTTATG-ATTT---AA--GTGGAT-GAA-AACTATTTTTACG-CAGG-ATA-TACT---TTGCATTTA-C----GT-AA-A-AA-TC-CAGCTCCCCAAACTTATGTTTGTCAACA------------------------CGCTTG----TCCTATA-----CAGGTA----------ACCTCATGCGGAGGTGAGAACAAAGTACAT---------GTATATGTAAAGCATTC-AAC-------------ATA-AG-TTAA----TGAT-AGG--TAAATCAATTTA--GGGGCAAGC
gi|20                         :                                                                                                                                                                                                                        aaagaaaatggatttaatttat--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTtaaaag
gi|3                          :                       agccaagacaccacaatggatagaactctgaaTTTTTTAT---TTTCTCAATG-TGAATAGAAGAAATCATTTTTCAGCAGATATAATACT---TCATATTTA-TA--------TA-AA-TC-TGGCTCCCAAAA-TTGTGT--GTCTA---------------------------GCTAAGAAACCATATG------AGGAGGTGGAACGCTAC--------------------------ATTTCTAAAACGTATGTCAAAAGCATCC-AAC-ATTTCCAACA-TCTA-CA-TTAA----TGAT-A----A--ATCTAT-----GGAGCAAGCACAAGT-ACGA-A-ATAACTGA--AAAT
gi|4                          :                                                                                                                                                                                                                                                                                             AGCATTC-AAC-AGTTC---GA-CGTG-TG-TCAACTGTTGAT------T--AT-AACTTAAGGGAGCAAGCAC-A------------AA---G--AAATTTTCGTTGAAAAGG-----------TTTTTTCC-----CATCGAAG-------CCATC-AGCTTTG-TAACTGAGCCACGTA----TG---ATGTGAACC-----AG--GGTTCGTGCCTTGTTTTGAAAATCA-AAA-GTTTAGATCTCTCAAA-----------TACATCTT--TGCATCAG-----GA-------------------TTG----TTTT-TGCGTTTTACAAGGATCAAATGCTATagctttattttgcttttaaaagc
gi|5                          :                                                                                                   A-CAGG-GTC-CACT---TCATAATTG---------CATA-AAATC-CGGCTCCCTAAA-TCGTGTTTGTAAACAAGATGTTTGCGAAACAAATGCCTACGCATT----TCATAGGACAGTCAGGAA----------A--------------------------------------GTATGTCAAAAGCATTC-AGC-ATTTC---GACTATA-GG-TTAA----TGATGA----T---TTAATTTA--GG---AAACA--AAT-A-GAGA-ACAAAC-A--GAATTTTCGTTGAAAAGG-----------CTTataat
gi|6                          : GGACATGGAGCCGATTTTT---TGGTTAATTGAAATTG--ACAGTATATGAAGATATTTCATAGAT-----AA--GTGGGC-TAATAA-TATTTTTACA-CACG-ATA-TGCTAAAT-GTATTTA---------CATATAA-TT-CAGTTCCCAAAA-TTTTGTTTGTCAACA------------------------TGTTT
gi|7                          :                                                                                                                                                                                                                                                                                                                                                     taaag--GGAGCAAGCGC-TGA-A-GA-A--CAC---A--ACATTTTCGTTGTAAAGGATTTGGTGGGTTTTTTTTT-----TA-CGAAA-------CCGTT-ACCATTG-TAGTTCAATCACTTG-------ACATGTTAACATAAACAG--GATTTGTGGCCTCTTTTGAAAA--G-AAA-
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ag-TAATTGAGCCATGTG-------ACACGTCAACATA---AGCAGACTCGTGCATCTTTTAGAAAAT-G-CAA-A-------GTCTTAAA-----------TACATCTT--TGCGTCAGTTTTTGA-AATTTAG---------GCTTG----TGTC-TACATTTTATACGAATCAAATACTATTATaaaagttaaga
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TG----TGAAC--GTAAACA------G--GGCTTGTGTCTTCTTCTGAAAAT-G-AAAAGTT-------CTCAAC-----------TACATCTTGTTACGTCAGTTTATGA-AATTTAG---------CTTTGTTGATATCATATGTTTTACACAAATCAAATGCAATCATatgatca


blockSeqs                     :          TTG       GA     TAATTGAAATTG        T  A     A   T  GA  TTCTCAATG      A   C  G  T       G    T   A    AAA T       CTAGTTAG        A  T        A   C               CGCTTGTCCTATACAGGTAACCTCATGCGGAGGTGAGAACAAAGTACAT                                                                     A   G     CAA  C    TCAT    CTGT    AAAACT     CA  C  AG          CAAGTACGAAATAACTGA                 A     ATTTGGTGGGT        .      T     .        T  AATT    T  A           GACATGTTAACATAAACA        CA G      T   A         CGT    A   T            .                  GT           CA  T       .             TTGA C  A  T
blockSeqs                     :          GCC       .      ATTTCGTT            .  A     C   T  AG  TTAA           .   A  C  C       .    .   .    .   T       CGTAAA          .  .        T   .               AGATGTTTGCGAAACAAATGCCTACGCATTTCATAGGACAGTCAGGAAA                                                                     .   .     A    .    AG      .       AGGTAA     CT  T  .           AATAGAGAACAAACA                    A     .                  .      T     .        A  AGCT    T  G           GACACGTCAACATAA           .  G      G   A         TCA    .   T            .                  .            TA  .       .             .    T  .  T
blockSeqs                     :                                               .  G     T   C  G   AA             .   G  A  T       .    .   .    .   T       CATAT           .  .        C   .               GCTAAGAAACCATATGAGGAGGTGGAACGCTACATTTCTAAAAC                                                                          .   .     .    .    CA      .       GAT        TA  T  .           CTGAAGAACACA                       T     .                         .     .        G  ACCA    T  A           ATGATGTGAACCA             .  A      C   G         TA     .   T            .                  .            TT  .       .             .    T  .  C
blockSeqs                     :                                                        A   .  .   AA             .   T  .  A       .    .   .    .   C       TATA            .  .        C   .                                                                                                                                     .   .     .    .    TG      .       AA         C   T  .           CAAAG                                                                                        .  .           GTGAACGTAAACA             .  A      G   C         TG     .   T            .                  .            TT  .       .             .    G  .  C
blockSeqs                     :                                                                                  .   .  .  T       .    .   .    .   C       CATA            .  .        A   .                                                                                                                                     .   .     .    .    GG      .       T          A   .  .                                                                                                                       TGATAGTT                  .  G      C   T         TG     .   .            .                  .            AT  .       .             .    A  .  T
blockSeqs                     :                                                                                                    .    .   .    .   .       CAA             .  .        T   .                                                                                                                                     .   .     .    .                                      .                                                                                                                                                 .  .      T   C         G      .   .            .                  .            .   .       .                         
blockSeqs                     :                                                                                                             .    .   .                       .  .        A   .                                                                                                                                     .   .                                                                                                                                                                                                                                  .                                                                                      


blockSeqCons                  :                                                                   TTAA*****                                                  CATA**********                                                                                                                                                                                            AA*******         **          CACAAAGAACA************                                                                      T*             GANACGTNAACGTACA*********                         TG**                    ***********                                 *********
originalCons                  : GGGCATGGANCGGATTTTTGA-CGAT--ATT----TCGTTACAGAA-ATAAAGATNTTTTATGAATTT---AATGGTGGAT-TAANAAATANTTTTACA-CAGG-ATA-TACT---TCGTATTTA-TA---GT-CATA-AA-TC-CGGCTCCCNAAA-TCGTGTTTGTCAACA------------------------CGCTTN----TCGTATG-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTTC---GA-TATA-CG-TTAA----TGAT-A----T--ATCAATTTA--GGAGCAAGCAC-AGT-A-GA-A-ATAA---A--AAATTTTCGTTGNAAAGG-----------CTTTTTCC-----CATCGAAG-------CCGTC-AGCTTTG-TAGTTGAGCCACGTG----TGAACATGTNAACA-----AG--GGCTCGTGCCTTNTTTTGAAAAT-G-AAA-GTTTAGATGTCTCAAA-----------TACATCTT--TGCGTCAGTTTTTGA-AATTTAG---------GTTTG----TNTC-TACGTTTTACACGAATCAAATGCTATTAT
finalCons                     : GGGCATGGANCGGATTTTTGA-CGAT--ATT----TCGTTACAGAA-ATAAAGATNTTTTATGAATTTAA-----GTGGAT-TAANAAATANTTTTACA-CAGG-ATA-TACT---TCGTATTTACATA----------AA-TC-CGGCTCCCNAAA-TCGTGTTTGTCAACA------------------------CGCTTN----TCGTATG-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTTC---GA-TATA-CG-TTAA----TGATAA-------ATCAATTTA--GGAGCAAGCACACAAAGAACA------------AAATTTTCGTTGNAAAGG-----------CTTTTTCC-----CATCGAAG-------CCGTC-AGCTTTGT-AGTTGAGCCACGTGANACGTNAACGTACA---------G--GGCTCGTGCCTTNTTTTGAAAATG--AAA-GTTTAGATGTCTCAAA-----------TACATCTT--TGCGTCAGTTTTTGA-AATTTAG---------GTTTG----TNTC-TACGTTTTACACGAATCAAATGCTATTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTATTGAACATAGCTCAAATGCTTGTCATCAACCAAGAAAGCACACAAGGGGGAAAGAACACCAAGATTTCTAAAAATTGTGTCAAAACATTCAACATTTC






Alignments
lowQualScore                  :                                                                                                                                                                               11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                    
lowQualScore                  :                    111    44444444444444      1                   1                 1                            1       3333333333333333333                                  11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                           111               1111   1111             11           4444444444444444444444444                44444444444        33333        3333333     11111                       1      55555555555                        1111                   22222222222                                 222222222     1111                                  
lowQualScore                  :          888       999    66666666666666      0  7     1   3   3  5   99     1   7  3  1       5    5   5    888 1       3333333333333333333  5  5        1   5               66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666                 5   5     555  5    9999    4444   4444   3     88  33  0        8888888888888888888888888     2    1     77777777777        33333  7     2222222  4  11111   88 1           6  1 0  1   00000000000          1   1         7777     5     0       77777777777       77            22  5     0 222222222     4444 1  6  2                     0    
lowQualScore                  :          ...       ...    ..............      .  .     .   .   .  .   ..     .   .  .  .       .    .   .    ... .       ...................  .  .        .   .               .....................................................................................................                 .   .     ...  .    ....    ....   ....   .     ..  ..  .        .........................     .    .     ...........        .....  .     .......  .  .....   .. .           .  . .  .   ...........          .   .         ....     .     .       ...........       ..            ..  .     . .........     .... .  .  .                     .    
lowQualScore                  :          333       000    44444444444444      0  0     0   8   8  4   22     7   5  8  0       7    7   0    888 6       1111111111111111111  0  0        0   0               55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555                 0   0     777  7    7777    2222   2222   5     33  66  1        1111111111111111111111111     5    0     55555555555        33333  0     5555555  2  22222   88 4           7  0 5  0   33333333333          7   0         6666     1     7       11111111111       99            11  7     3 999999999     2222 0  7  2                     8    
consensus                     : GGGCATGGANCGGATTTTTGA-CGAT--ATT----TCGTTACAGAA-ATAAAGATATTTTATGAATTTAA--GTGGATTAANAAATANTTTTACA-CAGG-ATA-TACT---TCGTATTTA--------CAT--A-----AA-TC-CGGCTCCCNAAA-TCGTGTTTGTCAACA------------------------CGCTTN----TCGTATG-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTTC---GA-TATA-CG-TTAA----TGA----TAAATCAAT-TTA--GGAGCAAGCACG-A-AAGAA------CA-A----A-ATTTTCGTTGNAAAGG-----------CTTTTTCC-----CATCGAAG-------CCGTC-AGCTTTG-TAGTTGAGCCACGT-GACATGTNAACAT--A--C---AGGGCTCGTGCCTTNTTTTGAAAAT-G-AAAGTTTAGATGTCTCAAA-----------TACATCT--TTGCGTCAGTTTTTGA-AATTTAG---------GTTTG----TNTC-TACGTTTTACACGAATCAAATGCTATTAT
Reference ( family-1585 )     : GGGCATGGANCGGATTTTTGA-CGAT--ATT----TCGTTACAGAA-ATAAAGATNTTTTATGAATTTAA--GTGGATTAANAAATANTTTTACA-CAGG-ATA-TACT---TCGTATTTA--------CAT--A-----AA-TC-CGGCTCCCNAAA-TCGTGTTTGTCAACA------------------------CGCTTN----TCGTATG-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTTC---GA-TATA-CG-TTAA----TGA----TAAATCAAT-TTA--GGAGCAAGCACACA-AAGAA------CA-A----A-ATTTTCGTTGNAAAGG-----------CTTTTTCC-----CATCGAAG-------CCGTC-AGCTTTG-TAGTTGAGCCACGT-GANACGTNAACGT--A--C---AGGGCTCGTGCCTTNTTTTGAAAAT-G-AAAGTTTAGATGTCTCAAA-----------TACATCT--TTGCGTCAGTTTTTGA-AATTTAG---------GTTTG----TNTC-TACGTTTTACACGAATCAAATGCTATTAT
gi|1                          : GGGCATGGACAAGATCTTGGATCGAT----------CG--ACTGAA-AT---GATCTTTTATGAATTTAATGGTGGATTAAAAAATAGTTTTACA-AAGA-TTA-TACT---TGGTACTTATACACGTGCAT--AC----AA-CC-TGGCTCCCTAAA-TCATGTTTGTCAATA------------------------GGCTTC----TCATATC-----CAGGAA----------AC--------------------------AT---------GTATGTCAAAAGCATTC-AAT-ATTTT---GA-TACA-CG-TCTA----TGA----TATATCAAT-TTAT-GGATCAAGCATGAATAAGAATTAAAGCA-A----A-GCTTT-GTTGTAAAAG-----------CTTCTCCCCCCCTCCCCAAAAAAAAACCCCATCAAG---TGATAGTTTAGTCACGT-GACAATGAAATAT--A--TAAAAGTGATTGTACCTTGCTTTAAAAAT---CAAGTTTAGGTGTCTCAAATACATTATATGTACATCT--TGGCATCAGTGTTTGA-AATTTTGTTTTTTGTTGTTT-----TTTT-TAAATTTCACCTGAATCAAATGTT-TTAT
gi|10                         :                                                                                                                                              A-TC-CGACTCCCAAAA-TCGTGTTTGTCAACA------------------------TGCTTC----TTGTAGA-----CAGGGA----------AC--------------------------ca
gi|10                         :                                                                                                                                                                                                                                                                         at---------GTATGTTAAAAGCATTC-AAT-ATTTT---GA-TAcacaagcagaggtgagaacaccaggacttttaaaaagtatgttaaaagcattcaatattttgatagcat
gi|11                         :                                                                                                                                                                                                                                                                                                                                               atatccgactcccaaaatcgtgtttgtcaacatgcttcttgtagacagggaaccacaagcagaggtgagaacaccaggacttttaaaaaATCGAAG-------CCTTC-AATTTTG------GCGCAATGTTGATA-GTT---------------GGGCTCGGGTGTTACCTTGAAAAC-GTAAAATATAGATTTCTTCAA-----------TACATCT--TTACGAGAATTTCACA-AATTTGC---------GTTTgcat
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tctaca-AAAGTTTAAATGTCTCAAA-----------TACTTTT--TTACATCAGTTTTAGA-AATACAG---------GTTTG----TCGC-CATGTTTTACACAAATGAAATACTATT
gi|14                         :                                                                                                                                                                                                                                                                                     tATGTCAAAGACATTCAAACGGTTTCA--AA-CATATCATTTAA----TGA----TAAAACTATCCTA--GAAGCCAGCAC----AAGAA------TA-gata
gi|15                         :                                                          tttctaaaacTAA--GTGGCTTTACAA-TATTTTTGCA-CTGG-ATA-TACT---T-GTATTTA--------CA---A-----AA-CCTCAGCTCTCTAAA-TCACGATTGTTAACtact
gi|16                         :                               T----TTGTTATAGAA-ATAAAAAAAAAT-ATGAAT--AA--GTGGATTAAAAAGTACTTTTACA-CAGG-ACA-TACT---TTGTATTTA--------
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATCAGTTTTTTTTAATTTAG---------ATTTG----TTGC-TATGTTTTAAATGATTTAAATGCT
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  -GATATGTAAGC-----------AAGGCTTGTGGTTCATTCTAAAATT-A-AAAGTTTGGATGTCTCAAA-----------CACATCT--GTACATttgtgaattcataata
gi|19                         :                                                                                                        A-TGTT---TTGTATTTA--------C-T--AGTTAGAA-TT-CTGCTCCGCAAG-TTGTGTTTGTCAACA------------------------CGCTTG----T
gi|2                          : GAGCATTGATTGGATTTTTGA-CAAT--ATT----TCGTTACAGAA-ATAAAGATCTTTTATG-ATTTAA--GTGGATGAA-AACTATTTTTACG-CAGG-ATA-TACT---TTGCATTTA--------CGTAAA-----AA-TC-CAGCTCCCCAAACTTATGTTTGTCAACA------------------------CGCTTG----TCCTATA-----CAGGTA----------ACCTCATGCGGAGGTGAGAACAAAGTACAT---------GTATATGTAAAGCATTC-AAC-------------ATA-AG-TTAA----TGATAGGTAAATCAAT-TTA--GGGGCAAGC
gi|20                         :                                                                                                                                                                                                                         aaagaaaatggatttaatttat--------------------------AT---------GTATGTCAAAAGCATTC-AAC-ATTtaaaag
gi|3                          :                       agccaagacaccacaatggatagaactctgaaTATTTTCTCAATGTGA--ATAGA---AGAAATCATTTTTCAGCAGATATAATACT---TCATATTTA--------TAT--A-----AA-TC-TGGCTCCCAAAA-TTGTGT--GTCTA---------------------------GCTAAGAAACCATATG------AGGAGGTGGAACGCTAC--------------------------ATTTCTAAAACGTATGTCAAAAGCATCC-AAC-ATTTCCAACA-TCTA-CA-TTAA----TGA----TAAATCTAT------GGAGCAAGCAC----AAGTA------CG-A----A-AT
gi|4                          :                                                                                                                                                                                                                                                                                         tttttAGCATTC-AAC-AGTTC---GA-CGTG-TG-TCAACTGTTGA----TTA--TAAC-TTAAGGGAGCAAGCACA---AAGAA----------------ATTTTCGTTGAAAAGG-----------TTTTTTCC-----CATCGAAG-------CCATC-AGCTTTG-TAACTGAGCCACGT-ATGATGTGAAC-------C---AGGGTTCGTGCCTTGTTTTGAAAATCA-AAAGTTTAGATCTCTCAAA-----------TACATCT--TTGCATCAG-----GA-------------------TTG----TTTT-TGCGTTTTACAAGGATCAAATGCTATaactgaaaatagctttattttgcttttaaaagc
gi|5                          :                                                                                               A-CAGG-GTC-CACT---TCATAATTG--------CAT--A-----AAATC-CGGCTCCCTAAA-TCGTGTTTGTAAACAAGATGTTTGCGAAACAAATGCCTACGCATT----TCATAGGACAGTCAGGAA----------A--------------------------------------GTATGTCAAAAGCATTC-AGC-ATTTC---GACTATA-GG-TTAA----TGA----TGATTTAAT-TTA--GG---AAACAAATA-GAGAA------CA-AACAGA-ATTTTCGTTGAAAAGG-----------CTTataat
gi|6                          : GGACATGGAGCCGATTTTT---TGGTTAATTGAAATTG--ACAGTATATGAAGATATTTCATAGAT--AA--GTGGGCTAATAA-TATTTTTACA-CACG-ATA-TGCTAAAT-GTATTTA--------CAT--AT----AA-TT-CAGTTCCCAAAA-TTTTGTTTGTCAACA------------------------TGTTT
gi|7                          :                                                                                                                                                                                                                                                                                                                                                    taaag--GGAGCAAGCGC-TG-AAGAA------CACA----ACATTTTCGTTGTAAAGGATTTGGTGGGTTTTTTTTT-----TA-CGAAA-------CCGTT-ACCATTG-TAGTTCAATCACTT-GACATGTTAACATAAA--C---AGGATTTGTGGCCTCTTTTGAAAA--G-AAA
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ag-TAATTGAGCCATGT-GACACGTCAACAT--AAGC---AGA-CTCGTGCATCTTTTAGAAAAT-G-CAAA-------GTCTTAAA-----------TACATCT--TTGCGTCAGTTTTTGA-AATTTAG---------GCTTG----TGTC-TACATTTTATACGAATCAAATACTATTATaaaagttaaga
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTGAACGT--AAAC---AGGGCTTGTGTCTTCTTCTGAAAAT-GAAAAGT-------TCTCAAC-----------TACATCTTGTTACGTCAGTTTATGA-AATTTAG---------CTTTGTTGATATCATATGTTTTACACAAATCAAATGCAATCATatgatca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTATTGAACATAGCTCAAATGCTTGTCATCAACCAAGAAAGCACACAAGGGGGAAAGAACACCAAGATTTCTAAAAATTGTGTCAAAACATTCAACATTTC