lowQualScore : 11111111111111111
lowQualScore : 2 11111 111 11 11111 111 1111 11111111111111111 11 44444 2222 1 1 1 11 111111 22 111 1 11 222 111 555555555555555555555555 111111 33333333333333 111 1 111 33 11 111111 111 11111 222222222 1 11 111 1 22222222222 1111 1111 2222222222 111 1 444 111 111 2222 2 2 11
lowQualScore : 0 11111 000 2 33 55555 000 99 6666 55555555555555555 6 6 6 6 6 6 6 6 55 33333 6 3333 6 6 6 7 0 99 6 99 77 99 6 0 7 8 11 666666 88 11 6 777 6 77 5 5 5 111 5 5 5 1 55 333 5 5 1 77 5 5 5 66 4 66 000 333333333333333333333333 3 999999 5 77777777777777 000 5 1 3 0 55 555 5 3 0 22 77 5 2 77 6 9999 2 888 888888 111 66666 666666666 5 5 88888 5 5 77 1 5 5 5 1 5 55 66 5 5 5 77 33 5 5 5 2 5 4 4 4 4 4 4 66 66 5 5 5 5 77 000 1 77777777777 5 5 5 1111 5 3333 9999999999 6 6 6 111 8 11 6 99 6 3 99 2 000 6 6 111 99 111 7777 0 5 88 8 4 11 8
lowQualScore : . ..... ... . .. ..... ... .. .... ................. . . . . . . . . .. ..... . .... . . . . . .. . .. .. .. . . . . .. ...... .. .. . ... . .. . . . ... . . . . .. ... . . . .. . . . .. . .. ... ........................ . ...... . .............. ... . . . . .. ... . . . .. .. . . .. . .... . ... ...... ... ..... ......... . . ..... . . .. . . . . . . .. .. . . . .. .. . . . . . . . . . . . .. .. . . . . .. ... . ........... . . . .... . .... .......... . . . ... . .. . .. . . .. . ... . . ... .. ... .... . . .. . . .. .
lowQualScore : 0 22222 222 5 88 22222 000 22 7777 22222222222222222 7 7 7 7 7 7 7 7 88 33333 7 7777 7 7 7 3 5 22 7 22 77 22 7 0 0 0 00 000000 88 00 7 555 7 99 7 7 7 444 7 7 7 7 77 666 7 7 7 99 7 7 7 11 4 99 444 111111111111111111111111 2 444444 0 33333333333333 999 7 4 6 9 99 777 7 9 7 99 99 7 5 33 7 2222 5 666 333333 777 77777 777777777 7 0 00000 7 7 99 4 7 7 7 4 0 22 99 0 7 7 99 66 0 0 0 6 0 0 4 4 4 4 4 99 99 0 7 7 7 99 000 4 11111111111 7 7 7 6666 7 3333 0000000000 7 7 7 777 0 66 7 22 7 3 22 5 222 7 7 777 22 777 5555 8 6 88 0 0 00 0
consensus : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GG-CTT---------TTA-A-AGAA-GC-TTA-AA-T-TT-CCTG--TCTT---TTGGAAGAAAAAA-AG---TC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCAC-T--GATG---A--TG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-ATTTC-GCAGT-A-GT-AACCA--TTTTT--GGAA-ATA-TTCCAATATGCAA--CG-TATCCC-TATT-CCCAGATTCAA--A-CGAT--A-T-CAAC------------------------AAAAAAT------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGG-G-TGTA-TTCCATCGAACTTGAA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGATAAAC-TC--ATA-AAGACAG-TAAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTC-C--GC-TTCA-GCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TT-GGAAA-TA-TTA--TTGAAAAG--GCTTGACAGTCTTGCTAT-C-TGCC-AATTTANTTTTTTAA-AAGATAGAAACT-TCGATTTTG-G-CT-C-CA--TGT--T-G-CATG-TA-T--T---TTC-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---TA-CG-CAAA-TACCGAATAAT-TTG---CTCTA-CATAATTAAT-AAACTT--CTGT-CT-GCT--TTCTGCATTTTTTT--CCTG-TTCT-TTTTCC---TTTA--ATTAT---TCAGA---AATA-TTCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
Reference ( gi|3 ) : CAATAAA-CAATTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GG-CTTATTAATAATTTA-A-AGAA-GC-TTA-AA-T-TT-CCTG--TCTT---CTGGAAGAAAAAA-AA---TC-ACA-AATCTTTTGC-AAAAGACTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCTC-T--GATG---A--TG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-ATTTT-GCAGT-A-GT-AAACA--TTTT---GGAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTCAA--A-CGAT--A-T-CAAC------------------------AAAAAAT------ACAGTG-AATGTGGGGGC-TGAAGTAGATGGG-G-TGTA-TTCCATCGAACTTGAA-TCCTGCCTTTGAGCGTTTCCATGC-TCATT---ATCAC-TTTCCAGGCCCTTAGATAAA--TC--ATA-AAGACAAGTAAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TTGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTC-C--GC-TTCA-GCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TT-GGAAA-TA-TTA--TTGAAAAA--GCTTGACAGTCTTGCTAT-C-TGCC-AATTTAATTTTTTAA-AGGATAGAAACT-TCGATTTTG-G-CT-C-CA--TGT--T-G-CATG-TA-T--T---TTC-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AAT-ACA---TA-CG-CAAA-TACCGAATAAT-TTG---CTCTA-CATAATTAAT-AAACTT--CTGT-CT-GCT--TTCTGCATTTTTTTTCCCTG-TTCT-TTTTCC---TTTA--ATTAT---TCAG----AATATTTCG-AT-CAAC-AATAAGGAT--T-TTTTATGTA
gi|4 : CAATAAAACACT--ATGTTAACTGGCTTTTAGCAGGAG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-AGTGATT-A----------------A-A-AGAA-GC-TTA-AATT-TT-CTTG--TCTT----TGGAAGAAAAAA-AG---TC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGT--TTGG-ATGGTCCC--CCATGAGA-CATCCACTT--GATG---A--TT-ATGTTAGTC-CTGGTGGGCTT-T-GTCCA-GAA--AATAA-TT--GCAT-ATTTTCGCAGT-A-GT-AACCATTTTTT---GGAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTCAA--A-CGAC--A-T-CAAC------------------------AAAAAAT------GCAGTG-AATGTTGGGGC-TGAAGAAGATGGG-GTTGTA-TTTCATCGAACTTGAA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGATAAAACTC--AT--AAGACAGGTAAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-G-TTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--ATTTT-AGTCGC--G--TTCA-GCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCAT--TTTTGATCA--TT-GGAAA-TA-TTA--TTGAAAAG--GCTTGACAGTCTTGCTAT-C-TGCC-AATTAATTTTTTTAA-AAGATAGAAACT-TCGATTTT--G-CT-C-CA--TGT--T-G-CATG-TA-T--T---TCT-GGTA-----------TAA-CGATCCCGAC-T-TTTAA-AAT-GCAGTTC---AATAACATATTA-CG-CAAA-TACCGAATAA--TTG---CTCTA-CATAATTAAT-AAACTT--CTGT-CT-GCT--TTCTGCATTTTTTT--CCTGTTTCT-TTTTCC---TCTA--ATTAT---TCAGA---AATA-TTCG-AT-GAACAAATAAGGAT--T-TTTTATGTA
gi|5 : ttaaCAATAAA-CA-CTAATGT-A-CTGGCGT--AGCAGATA-GGTATAAA-T--TATGATATCAC--AATCTC-CT-TGTG-------CC-----GTAATTTA-ACAGAATGC-TTA-AA-T-TT-CCTG--TCTT-----GGAAGAGAAAA-AAAG-TC-ACA---TCTTTTGC-AAAAGACTTGCAC--TCGAAG--TTGG-ATATTCCC--CATTGAGAGCATCCAC-T--GATG---A--TG-ATGT-AGTC-CTGGTGGG-TT-G-GTCCA-GAA--AATA--TTG-GCATCATTTC-ACAGT-A-TT-AAACCGTTTTT---GGAA-ACA-TTCCAATATGTAA--CG-T-TCCC-TATTGCCCAGATTCAA--AACG-T--A-T-TATC------------------------ACAAAATT-----ACAGTG-AATG-----------A--AGATGGG-G-TGTAATTCCATCGA-CTTGAAATCCT--CCTTGAGGGTT-CCATGC--CATT---ATCAC-TCTTCAGGCC-TTA-ATAAACTTC--ATA-AATACA--TAAATGTTCT--T-CATGCTCCAACTTGACGCAA-GTTTTT----C-GTTGTGTTCA---ACT-----TCAA---------T-CTCC--CT--C--GTTTA-CGTT-CCGGC-TTCAAGCAACCGCT-ACTGCCT-CAGATGTCTCT-ACATATTT-TTTTGATCA--TTTGGAAA-TA-TTGATTTGAAAAA--GCTTGA-AGTCTTGCTAT-C-TGC---ACTTATTTTTTTTATAAGAT-GAAA-T-TCGATTTTGCG-CT-C-CAAATGT--TTG-TATG-TA-T--T---TTCCTGTA-----------TAA-CGATCCCGAC-TCTT--A-AAT-GCAGTTC---AAT-ATA---TAACG-CA---T-CTGAATA-T-TTG---CTCTAACATA-TAAAT-AAACTT---TGT-CTTGCT--TTCTGCATTTTTTTT-CATG-TTCTATTTTGC---TTTA--ATTAT---TAGA----AATATATCGAAT-CAAC-AAAAAAGAT--T-TTTTg
gi|1 : aAATAAAATAACTAATGT-CACTGG-TT--AG-AGATGTA---TAAA-TTCTATG-TATCACCCAATCTC-ATCTGTGATTTGG-CTTATT-------TA-A-A--A-G--TTA-AA-T-TT-CCTGG-TCTT---T--GAAGAAAAAA-AAAGTCC-ACA-AAATCTTTGC-AAA-GATTGGCAC--T-GAGG--TTGG-ATAGTCCC--CAATGAGAGCATCCAC-TTGGATG---ACATG-ATGTTAGTCACTGGTGGGCTT-G-GTCCACGAACGAATAA-TTG-GCAT-ATTTC-ACAGT-ACGT-AACCA--TTTTTT-GGAAGATA-TTCCCATATGCAAATTG-TATCCC-TATG-CC-AGATTCAA--A-CGAT--AATACAACC-----------------------AAAAAAT------ACAGTG-AATGCGGCGGCGTGAAG-AGATTGGCA-TGCA-TTCCATCGAACTTGA---TCTGCCTTTGAGCGTTGCCGTGC-TCATT---ATCAC-TCTC-AGGCCCTTAGATAAAC-TC--ATACAAGACGGTTAAAGGTTCTGTC-CACGATCCAACTTGACGCAA-GTTTTTTTCGTTGTTGTGTTCA---ACT-----TCAA---------T-CT-CACCC--C--GTTTTCAGTC-C--GCTTTCA-GCAACCG-TAAATGCCTTCAGATGTCTCTCACATTATCTTTTTGATCGTTTT-GGAAAGTATTTA--TTGAAAAAG-GCTTGACAGTCTTGCTATGCATGCC-AATTTATTTTTTTAA-AAGTTAG-AACTATCGATTTTG-G-CTCC-CA--TGT--T-GTTATGTTA-TTGT---TCC-TGTA-----------GAA-CGATCCCGAC-T-TT----AAT-GCAGTTC----AT-A------G-GG-CAAATTACCGAATAATGTTGTGCCTTTA-CATAATTAAT-AAACTT--CTGT-CTGGCTCATTCTGCATTTTTT---CCTG-TTCT-TGTTCCAAATTT---AT--T---TCAGGAAAAATA-TTCG--T-CACC-AATAAGGATTAT-TTTTATGtg
gi|2 : attattaataaAAA-CAATTA-TGT-AAGTGGCTT--AGCAGATG-G---TAAA-T-CTATTATATCAC--AAT-TC-ATCTGTGATT-GGGCT-------AATTTA-A-AGA--GCATTACAG-TGTT-CCTGAGTCTT---T-----GAAGAAA-AT---TC-ACAGAATCTTTTGCCAAAAGATTGGCACGTT-GAGGCGTTGGCATGATCCC--C-ATGAGAGCATCCAC-T--GATGGATA--TGTATG--AGTC-CTGGTGGGCTT-GCGTC---GAA--AATAAATTGAGCAT-ATTTC-GCACTGA-GT-AC-CA--TTTTTTGAGAA-ATAATTCCAATATGCAA--TGGTATCCCATTTT-CCCAGATTCAA--A-CAACTCA-A-CAACGAAAACAAAAACCAAAAAAAAAAAAAAAAACCACCAAACAATG-AATGTGGGG-C-TGGAGAAGA--GA-G-TGT--TTCCATCGAACTTGAAATCCTGCCTTTGGGCGTTTC--TGT-CTATT---ATCACAACTCAAGGCCCTTAGATAAA--CCTTATA-A
gi|12 : ataGCAGATG-G---TAAAAC-CTATGATATCAC--AATCTC-GT-TGTGATT-GG-CTT----------TA-A--GAA-GC-TTA-AA-T-TT-TCTG--TCTTTAGCTGAAAATAAAAGTAG---TC-ACA-AATCTTTTCC-AAAAGAGTGGCAC--T-GAGG--TTGA-ATGGTCCC--CCtagctacggttagatacgttggtgctcctcgcttctctcaaagtcctactgacgcaccgcatcgttcttttgcgttgctgccttatcgccgcgttgcaatcttctttccacgttttcgttcatacggatctctacgacactatttgttcatagtcgtctaaaagcagaactactacattcgtatcatcatcttgattgtgttgtccgattattcgaaaatgtggtccagttgcgttgctatccttggcgataatctatagccaagatactctctctctctctctcctcgtcagcgctttccgattttggactcgcatgtgttgcatgtacttttttgattaacgatcccgacttttacaatcgcagtc
gi|9 : TGATATCAC--A-TCTCCA-----AATT-GG-CTTACT------TTATA-AGAA-GC-TTA-AA-T-TTTCCTG--TCTT----TGGAAAGAAAAA-AG---TCCACA-AATCTTTTGC-AAA-GA-TGGCAC--T-GAGG--TTG--ATGGTCCCAGCCATGAGA-CATCCAC-T--GATG---A--TG--TG--AGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-ATTTT-GCAGT-A-GTGAAACA--TTTT---GGAA-ATA-TTCCAATAT-CAA--TG-TAT-CC-TATT-CCCAGATCCAA--A-CG
gi|6 : AGTC-CTGGCG--CTTTG-GTCCA-GAA--AATAA-TTG--CAT-ATTTC--CAGT-A-GT-AACCA--TTTT---G-AA-ATA-TTCCAAGATG-AA--TG-TA-CCC-TATT-C--ATATTCAA--A-CGAC--A-T-CAAC------------------------AAAAAAT------ACAGTG-AATGTGGTGGC-GGAAGAAGATGGG---TGTA-TTCCATCGAACTTGAA-TCCTGCCTTTGAGCATTTCCGTGCTTCATTA--ATCAC-TCTCCAGG-CCTTAGATAAA--CT--ACA---------TAAA----CT----TACG---CAAGTT----------TTTC----GTGT---GTTCA---ACT-----TCAA---------T-CTCCATTT--TCGGTTTG-AGTC-A--GCTTTCA-GCAACCG-T-AAGGCCTGC-GATGTCTCT-ACATCAAT-CTTTGATCG--TT--GAAA-TA-TTA---TGAAAAAAGGCTTGACAGTCTTGC-AT-C-TGCCAAATTTAGATTTTTAA-AAGATAGAAACT-TCGATTTGT-G-CT-C-CA--T-T--T-G-CAT--TA-T--TTAATTCGTGTGCGACTACTCATTAACCTATCCCG---C-TT--A-AAT-GCAGTTC---GAT-A-A---CT-CGCCAAA-TACTGAA-AAT-GTG---CTATA-CACAA-TAATCACACTCAGCTATCCT-G----TTCTG-ACTTCT----CTCA-TTAT-TACCCC---CATATTATTATCTATCAG----AA-AATTCA-ATACAACTAGTAAGTAT--TACTTTATg
gi|10 : taA--AATAA-TTG-GCAT-ATTTC-ACAGT-A-GT-AACCG--TTTTT--GGAA-ACA-TTCCAATATGTAA--CG-TATCCC-TATT-CCCAGATTCAA--A-CGAT--A-T-CAAC------------------------AAAAA-T------ACAGTG-AATG-----------A--AGATGGG-G-TGTA-TTCCATCGAACTTGAA-TCCTGCCTTTGAGCGTTTCCATGC-TCATT---ATCAC-TCTTCAGGCCCTTAGATAAAC-TC--ATA-AATACAGCTAAATGTTCTGTC-CATGCTCCAACTTGACGCa
gi|8 : CCAGATTCAA--A-CGAT--A-T-CAAC------------------------AAAAAAT------AC--TG-AAT
gi|7 : TTCAAGAA-CGAT--A---CATC------------------------AAAGA-T------ACAGTGGAATGTGGGGGC-TGA----GATGGG-G-TGTA-TTCCATGGAACTTGAA-TCCTGCCTTTGA-CGTTCCCATGC-TCATTGATATCAC-TTTCCAGGCCCTTAGATAAAC-TC--ATA-AAGACAAGTAA-GGTTCTGTCGCTCGCTCCAACTTGACGCAAAGTTTTT----TCGTTGT--TCATGGACTATGTGTCAAGCTGAAGTCTGCTCC-CCTGAC--GTTTT-AGTC-C--GC-TTCA-GCAACCG-T-AATGGCTTCAGATGTATCT-ACATCATC-TTTTGATCG--TT-GGAAA-TA-TTA--TTAAAAAA--GCTTGACAGTCTTGCTAT-C-TGCC-AATTCAATTTTATAA-AGGATAGAAACT-TCGATTTTG-G-CT-C-CA--TGT--T-G-CATG-TA-T--T---TTC-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---TA-CG-CAAA-TACCGAATAAT-TTG---CTCTA-CATAATTAAT-AAACTT--CTGT-CT-GCT--TTCTGCATTATTTTT-CCTG-TTCT-TTTTCC---TTTA--ATTAT---TCAGA---AATA-TACG-AT-CAACAAATAAGGAT--T-TTTTATGTAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttgtgttcaacttcaatctccacctcgtattagtccgcttcagcaaccgtaatgccttcagatgtctccacatcatcttttgatcgttg
gi|8 : ----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTATT-AGTC-C--GC-TTCA-GCAACCG-T-AATGCCTTCAGATGTCTCC-ACATCATC-TTTTGATCG--TT-G
gi|11 : ccagattcaaacgatatcaacaaaaaatactgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-CTCCACCT--C--GTTTT-AGTC-C--GC-TTAA-GCAACCG-T-AATGCCTTCAGATGTCTCT-ACACCATC-TTTTGATCG--TT-GGAAA-TA-TTA--TTGAAAAG--GCTTGACAGTCTTGCTAT-C-TGCC-AATTTAATTTTTTAA-AAGATAGAAACT-TCGATTTTG-G-CT-C-CA--TGT--T-G-CATG-CA-T--T---TTC-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTCCAAAATAACA---TA-CG-CAAA-TACCGAATAAT-TTG---C
gi|13 : AGATGTCTCT-ACATTATC-TTTTGATCG--TT-GAAAA-TA-TTA--TTGAAAAG--GTTTGACAGACTTGCTAT-C-TGCC-AATTTAATTTCTTAA-AAGATAGAAACT-TCGATTTTG-G-CT-C-C
gi|15 : TCTTGCTAT-C-TGCC-AATTTAATTATTTAA-AAGATAGAAACT-TAGATTTTG-G-CT-C-CA--TGT--T-
gi|2 : T-CCGATTTTG-GACT-CGCA--TGTGTT-G-CATG-TACT--T---TTT-TGAT-----------TAA-CGATCCCGACTT-TT--ACAATCGCAGT
gi|14 : ataaaacaattatgtaagtggcttagcagatggtaaatctattatatcacaattcatctgtgattgggctaatttaaagagcattacagtgttcctgagtctttgaagaaaattcacagaatcttttgccaaaagattggcacgttgaggcgttggcatgatccccatgagagcatccactgatggatatgtatgagtcctggtgggcttgcgtcgaaaataaattgagcatatttcgcactgagtaccattttttgagaaataattccaatatgcaatggtatcccattttcccagattcaaacaactcaacaacgaaaacaaaaaccaaaaaaaaaaaaaaaaaccaccaaacaatgaatgtggggctggagaagagagtgtttccatcgaacttgaaatcctgcctttgggcgtttctgtctattatcacaactcaaggcccttagataaaccttataatagctacggttagatacgttggtgctcctcgcttctctcaaagtcctactgacgcaccgcatcgttcttttgcgttgctgccttatcgccgcgttgcaatcttctttccacgttttcgttcatacggatctctacgacactatttgttcatagtcgtctaaaagcagaactactacattcgtatcatcatcttgattgtgttgtccgattattcgaaaatgtggtccagttgcgttgctatccttggcgataatctatagccaagatactctctctctctctctcctcgtcagcgcttAAT-AAACTT--CTGT-CT-GCT--TTCTGAATTTTTTC-CCCTG-TTCT-TTTTCC---TTTA--ATTTT---TCAG----AAc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TTATTTCGAAATAATATAGAAAAACAAAAGATTGTTA
Alignments
lowQualScore : 1 1 1 11 111 1111 4444444444444444 11 33333 1 11 222 1 1 111 11 444444444444444444444444 111111 111 22222 1111 111 11111 222222222 1 11 11 22222222222 1111 11111 111 11 111 111
lowQualScore : 0 0 0 8 0 11 6 111 666 77 1111 5 4444444444444444 1 5 5 5 5 5 5 5 5 33 11111 77 77 77 1 5 5 5 77 5 77 5 77 4 6 55 000 6 5 5 5 5 5 66 5 77 5 5 2 5 5 0 5 555 5 5 0 888 5 5 5 4 55 00 4 4 222222222222222222222222 4 222222 4 2 2 2 5 3 5 5 5 5 5 333 5 0 2 5 666 5 5 4 55555 22 0 5 0 888 2222 000 44444 222222222 5 0 66 66 5 66 5 5 5 5 4 4 00 5 5 66 11 4 4 4 55 4 4 4 4 4 55 4 66 5 5 5 66 888 5 5 33333333333 5 5 5 9999 5 0000 5 22222 5 5 000 6 5 77 999 33 0 0 5 5 77 5 5 5 00 77 77 5 000 000 6 6 6 6 7 99 6
lowQualScore : . . . . . .. . ... ... .. .... . ................ . . . . . . . . . .. ..... .. .. .. . . . . .. . .. . .. . . .. ... . . . . . . .. . .. . . . . . . . ... . . . ... . . . . .. .. . . ........................ . ...... . . . . . . . . . . . ... . . . . ... . . . ..... .. . . . ... .... ... ..... ......... . . .. .. . .. . . . . . . .. . . .. .. . . . .. . . . . . .. . .. . . . .. ... . . ........... . . . .... . .... . ..... . . ... . . .. ... .. . . . . .. . . . .. .. .. . ... ... . . . . . .. .
lowQualScore : 6 6 6 0 8 00 7 777 888 99 7777 7 7777777777777777 4 7 7 7 7 7 7 7 7 66 33333 99 99 99 4 7 7 0 99 7 99 7 99 3 7 88 888 7 5 7 7 7 7 99 0 55 0 0 2 0 0 0 0 111 0 0 2 999 0 0 0 0 55 66 4 4 888888888888888888888888 4 888888 4 5 5 5 0 1 0 0 0 0 0 888 0 2 5 0 222 0 0 3 99999 11 7 7 7 222 1111 000 33333 999999999 0 1 99 99 0 99 0 0 0 0 4 4 66 0 0 99 99 4 4 4 44 0 0 0 0 0 55 4 11 0 0 0 99 888 0 0 88888888888 0 0 0 0000 0 1111 0 33333 7 7 000 7 7 99 444 66 7 1 7 7 99 7 7 7 44 99 99 7 000 000 7 7 7 7 5 22 7
consensus : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GG-CT--TA--------TTA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTTT-G--GAAGA--AAAAA--A--GTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCACT--GATG---ATG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-ATTT-CGCAGT-A-GT-AACCA-TTTTT--GGAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--AT-CAA-C------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGGGT-GT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-A-G-TAAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
Reference ( family-158 ) : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GG-CT--T---------TTA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTTTTG--GAAGA--AAAAA--A--GTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCACT--GATG---ATG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-ATTT-CGCAGT-A-GT-AACCA-TTTTT--GGAA-ATA-TTCCAATATGCAA--CG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--AT-CAA-C------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGGGT-GT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-A-G-TAAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-NTTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
gi|1 : AATAAAATAACTAATGT-CACTGG-TT--AG-AGATGTA---TAAA-TTCTATG-TATCACCCAATCTC-ATCTGTGATTTGG-CT--TAT-------TTA-A-A--A-G--TTA-AAT-TT-CCT-GG-TCTTT----GAAGA--AAAAA--AAAGTCCACA-AAATCTTTGC-AAA-GATTGGCAC--T-GAGG--TTGG-ATAGTCCC--CAATGAGAGCATCCACTTGGATGAC-ATG-ATGTTAGTCACTGGTGGGCTT-G-GTCCACGAACGAATAA-TTG-GCAT-ATTT-CACAGT-ACGT-AACCATTTTTT--GGAAGATA-TTCCCATATGCAAATTG-TATCCC-TA-T-GCCAGATTC-AA--ACGATA-ATACAACC------------------------AAAAAA-T------ACAGTG-AATGCGGCGGCGTGAAGAGATTGGCAT-GC-ATTCCATCGAACTTG-A---TCTGCCTTTGAGCGTTGCCGTGC-TCATT---ATCAC-TCT-CAGGCCCTTAGAT-AAA-C-T-CATACAAGAC-G-GTTAAAGGTTCTGTC-CACGATCCAACTTGACGCAA-GTTTTTTTCGTTGTTGTGTTCA---ACT-----TCAA---------T-CT-CACCC--C--GTTTTCAGTCC--GCTTTC-AGCAACCG-TAAATGCCTTCAGATGTCTCTCACATTATCTTTTTGATCGTTTTGGAAAGTATTTA--TTGA-AAAAGGCTTGACAGTCTTGCTATGCATGCC-AATTTA-TTTTTTTAAAAGTTAG-AACTATCGATTTTG-G-CTCC-C--ATG-T--TGTTATGTTA-TTGT---TC-C-TGTA-----------GAA-CGATCCCGAC-T-TT----AAT-GCAGTTC----ATA--------GGGCAAATTACCGAATAATGTTGTGCCTTT-ACATAATTAAT-AAACTT--CTGTC-TGGCTCATTCTGCA-T-TTTT-T--CC-TG-TTCT-TGTTCC---A--AATTTATT---TCAGGAAAAATA-T-TCG--T-C-ACCAATAAGGATTAT-TTTTATG
gi|10 : attattaataaA--AATAA-TTG-GCAT-ATTT-CACAGT-A-GT-AACCG-TTTTT--GGAA-ACA-TTCCAATATGTAA--CG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--AT-CAA-C-------------------------AAAAA-T------ACAGTG-AAT-------------GAAGATGGGGT-GT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCATGC-TCATT---ATCAC-TCTTCAGGCCCTTAGAT-AAA-C-T-CATA-AATAC-A-GCTAAATGTTCTGTC-CATGCTCCAACTTGACGC
gi|11 : -CTCCACCT--C--GTTTT-AGTCC--GC-TTA-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACACCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-CA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTCCAAAATAACA---T-ACGCAAA-TACCGAATAAT-TTG---C
gi|12 : GCAGATG-G---TAAAAC-CTATGATATCAC--AATCTC-GT-TGTGATT-GG-CT--T---------T---A-AGAA-GC-TTA-AAT-TT-TCT-G--TCTTTAGCTGAAAA--TAAAAGTA--GTC-ACA-AATCTTTTCC-AAAAGAGTGGCAC--T-GAGG--TTGA-ATGGTCCC--CC
gi|13 : AGATGTCTCT-ACATTATC-TTTTGATCG--TTGAAAA-TA-TTA--TTG--AAAAGGTTTGACAGACTTGCTAT-C-TGCC-AATTTA-ATTTCTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--
gi|14 : AAT-AAACTT--CTGTC-T-GCT--TTCTGAATT-TTTTCC--CC-TG-TTCT-TTTTCCTTTA--A--TTT-T---TCAG---AAA
gi|15 : TCTTGCTAT-C-TGCC-AATTTA-ATTATTTAAAAGATAGAAACT-TAGATTTTG-G-CT-C-C--ATG-T--T
gi|2 : ATAAAACAATTA-TGT-AAGTGGCTT--AGCAGATG-G---TAAA-T-CTATTATATCAC--AAT-TC-ATCTGTGATT-GGGCTAAT---------TTA-A-AGA--GCATTACAGTGTT-CCT-GAGTCTTT-------GA--AGAAA--A--TTC-ACAGAATCTTTTGCCAAAAGATTGGCACGTT-GAGGCGTTGGCATGATCCC--C-ATGAGAGCATCCACT--GATGGATATGTATG--AGTC-CTGGTGGGCTT-GCGTC---GAA--AATAAATTGAGCAT-ATTT-CGCACTGA-GT-A-CCA-TTTTTTGAGAA-ATAATTCCAATATGCAA--TGGTATCCCATTTT-CCCAGATTC-AA--ACAACTCAA-CAA-CGAAAACAAAAACCAAAAAAAAAAAAAAAAA-CCACCAAACAATG-AATGTGGGG-C-TGGAGAAGA--GAGT-GT--TTCCATCGAACTTG-AAATCCTGCCTTTGGGCGTTTCTGT-C-T-ATT---ATCACAACTCAAGGCCCTTAGAT-AAACC-T-TATA-A
gi|2 : T-CCGATTTTG-GACT-CGC--ATG-TGTTG-CATG-TACT--T---TT-T-TGAT-----------TAA-CGATCCCGACTT-TT--ACAATCGCAGTtagctacggttagatacgttggtgctcctcgcttctctcaaagtcctactgacgcaccgcatcgttcttttgcgttgctgccttatcgccgcgttgcaatcttctttccacgttttcgttcatacggatctctacgacactatttgttcatagtcgtctaaaagcagaactactacattcgtatcatcatcttgattgtgttgtccgattattcgaaaatgtggtccagttgcgttgctatccttggcgataatctatagccaagatactctctctctctctctcctcgtcagcgctttccgattttggactcgcatgtgttgcatgtacttttttgattaacgatcccgacttttacaatcgcagtc
gi|3 : ataaaacaattatgtaagtggcttagcagatggtaaatctattatatcacaattcatctgtgattgggctaatttaaagagcattacagtgttcctgagtctttgaagaaaattcacagaatcttttgccaaaagattggcacgttgaggcgttggcatgatccccatgagagcatccactgatggatatgtatgagtcctggtgggcttgcgtcgaaaataaattgagcatatttcgcactgagtaccattttttgagaaataattccaatatgcaatggtatcccattttcccagattcaaacaactcaacaacgaaaacaaaaaccaaaaaaaaaaaaaaaaaccaccaaacaatgaatgtggggctggagaagagagtgtttccatcgaacttgaaatcctgcctttgggcgtttctgtctattatcacaactcaaggcccttagataaaccttataatagctacggttagatacgttggtgctcctcgcttctctcaaagtcctactgacgcaccgcatcgttcttttgcgttgctgccttatcgccgcgttgcaatcttctttccacgttttcgttcatacggatctctacgacactatttgttcatagtcgtctaaaagcagaactactacattcgtatcatcatcttgattgtgttgtccgattattcgaaaatgtggtccagttgcgttgctatccttggcgataatctatagccaagatactctctctctctctctcctcgtcagcgcttCAATAAA-CAATTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GG-CT--TATTAATAATTTA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTTCTG--GAAGA--AAAAA--A--ATC-ACA-AATCTTTTGC-AAAAGACTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCTCT--GATG---ATG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-ATTT-TGCAGT-A-GT-AAACA-TTTT---GGAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--AT-CAA-C------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGTAGATGGGGT-GT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCATGC-TCATT---ATCAC-TTTCCAGGCCCTTAGAT-AAA---T-CATA-AAGACAA-G-TAAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TTGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAAGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAGGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AAT-ACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-TTCCC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG----AATATT-TCG-AT-CAAC-AATAAGGAT--T-TTTTATGTAc
gi|4 : CAATAAAACA-CTA-TGTTAACTGGCTTTTAGCAGGAG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-AGTGATT-A------------------A-A-AGAA-GC-TTA-AAT-TT-TCTTG--TCTTT-G--GAAGA--AAAAA--A--GTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGT--TTGG-ATGGTCCC--CCATGAGA-CATCCACTT-GATG---ATT-ATGTTAGTC-CTGGTGGGCTT-T-GTCCA-GAA--AATAA-TTG--CAT-ATTTTCGCAGT-A-GT-AACCA-TTTTTT-GGAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAC--AT-CAA-C------------------------AAAAAA-T------GCAGTG-AATGTTGGGGC-TGAAGAAGATGGGGTTGT-ATTTCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGATAAAA-C-T-CAT--AAGAC-AGG-TAAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-G-TTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--ATTTT-AGT-C--GCGTTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCAT--TTTTGATCA--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTAA-TTTTTTTAAAAGATAGAAACT-TCGATTTT--G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TC-T-GGTA-----------TAA-CGATCCCGAC-T-TTTAA-AAT-GCAGTTC---AATAACATATT-ACGCAAA-TACCGAATAA--TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TGTTTCT-TTTTCCTCTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-GAACAAATAAGGAT--T-TTTTATGTA
gi|5 : ttaaCAATAAA-CA-CTAATGT-A-CTGGCGT--AGCAGATA-GGTATAAA-T--TATGATATCAC--AATCTC-CT-TGTG-CC-GT-AA--T---------TTA-ACAGAATGC-TTA-AAT-TT-CCT-G--TCTT--G--GAAGAGAAAAAA--A--GTC-ACA---TCTTTTGC-AAAAGACTTGCAC--TCGAAG--TTGG-ATATTCCC--CATTGAGAGCATCCACT--GATG---ATG-ATG-TAGTC-CTGGTGGG-TT-G-GTCCA-GAA--AAT-A-TTG-GCATCATTT-CACAGT-A-TTAAACCG-TTTTT--GGAA-ACA-TTCCAATATGTAA--CG-T-TCCC-TATTGCCCAGATTCAAA--ACG-T--AT-TAT-C------------------------ACAAAATT------ACAGTG-AAT-------------GAAGATGGGGT-GTAATTCCATCG-ACTTGAAA-TCCT--CCTTGAG-GGTTCCATGC--CATT---ATCAC-TCTTCAGG-CCTTA-AT-AAA-CTT-CATA-AATAC-A---TAAATGTTC--TT-CATGCTCCAACTTGACGCAA-G-TTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTC--CCT--C--GTTTA-CGTTCCGGC-TTCAAGCAACCGCT-ACTGCC-TCAGATGTCTCT-ACATATTT-TTTTGATCAT-TTGGAAA-TA-TTGATTTG--AAAAAGCTTGA-AGTCTTGCTAT-C-TGC---ACTTATTTTTTTTATAAGAT-GAAA-T-TCGATTTTGCG-CT-C-CAAATGTT--TG-TATG-TA-T--T---TTCC-TGTA-----------TAA-CGATCCCGAC-TCTT--A-AAT-GCAGTTC---AAT-ATA---TAACGC--A-T-CTGAAT-AT-TTG---CTCTAACAT-ATAAAT-AAACTT---TGTCTT-GCT--TTCTGCATT-TTTT-T--TCATG-TTCTATTTTGCTTTA--A--TTA-T---T-AG---AAATA-TATCGAAT-CAACAAA-AAAGAT--T-TTTTg
gi|6 : aAGTC-CTGGCG--CTTTG-GTCCA-GAA--AATAA-TTG--CAT-ATTT-C-CAGT-A-GT-AACCA-TTTT----GAA-ATA-TTCCAAGATG-AA--TG-TA-CCC-TATT-C--ATATTC-AA--ACGAC--AT-CAA-C------------------------AAAAAA-T------ACAGTG-AATGTGGTGGC-GGAAGAAGAT-GGGT-GT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCATTTCCGTGCTTCATTA--ATCAC-TCTCCAGG-CCTTAGAT-AAA-C-TACATA-AA----------------CT----TACG---CAAGTT---------TTT-------CGT-GTGTTCA---ACT-----TCAA---------T-CTCCATTT--TCGGTTTG-AGTCA--GCTTTC-AGCAACCG-T-AAGGCCTGC-GATGTCTCT-ACATCAAT-CTTTGATCG--TT-GAAA-TA-TTA---TGAAAAAAGGCTTGACAGTCTTGC-AT-C-TGCCAAATTTA-GATTTTTAAAAGATAGAAACT-TCGATTTGT-G-CT-C-C--AT--T--TG-CAT--TA-T--TTAATT-CGTGTGCGACTACTCATTAACCTATCCCG---C-TT--A-AAT-GCAGTTC---GATAACT---C-GC-CAAA-TACTGAA-AAT-GTG---CTAT-ACACAA-TAATCACACTCAGCTATC----CTG-TTCTG-ACT-TCTC-T--C---A-TTAT-TACCCCCATATTA--TTA-TCTATCAG---AAA-A-T-TCA-ATACAACTAGTAAGTAT--TACTTTATtg
gi|7 : taTTC-AAGAACGAT--A--CAT-C------------------------AAAGA--T------ACAGTGGAATGTGGGGGC-TGA----GATGGGGT-GT-ATTCCATGGAACTTG-AA-TCCTGCCTTTGA-CGTTCCCATGC-TCATTGATATCAC-TTTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-AAG-TAA-GGTTCTGTCGCTCGCTCCAACTTGACGCAAAGTTTTT----TCGTTGT--TCATGGACTATGTGTCAAGCTGAAGTCTGCTCC-CCTGAC--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGGCTTCAGATGTATCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTA--AAAAAGCTTGACAGTCTTGCTAT-C-TGCC-AATTCA-ATTTTATAAAGGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATTATTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-ACG-AT-CAACAAATAAGGAT--T-TTTTATGTAa
gi|8 : CCAGATTC-AA--ACGAT--AT-CAA-C------------------------AAAAAA-T------AC--TG-AAT
gi|8 : ----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTATT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCC-ACATCATC-TTTTGATCG--TTGannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttgtgttcaacttcaatctccacctcgtattagtccgcttcagcaaccgtaatgccttcagatgtctccacatcatcttttgatcgttg
gi|9 : ccagattcaaacgatatcaacaaaaaatactgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATATCAC--A-TCTCCA-----AATT-GG-CT--TACT------TTATA-AGAA-GC-TTA-AAT-TTTCCT-G--TCTTT-G--GAAAG--AAAAA--A--GTCCACA-AATCTTTTGC-AAA-GAT-GGCAC--T-GAGG--TTG--ATGGTCCCAGCCATGAGA-CATCCACT--GATG---ATG--TG--AGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-ATTT-TGCAGT-A-GTGAAACA--TTTT--GGAA-ATA-TTCCAATAT-CAA--TG-TAT-CC-TATT-CCCAGATCC-AA--ACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTATTTCGAAATAATATAGAAAAACAAAAGATTGTTA
Alignments
lowQualScore : 1 1 1 11 111 1111 3333333333333333 11 111111 1 11 111111 1 1 222 444444444444444444444444 111111 111 2222222 1111 111 11111 222222222 1 11 11 22222222222 1111 11111 111 11 111 111
lowQualScore : 0 0 0 8 0 11 6 111 666 77 1111 1 5 0 5555555555555555 5 5 5 5 5 5 33 5 888888 0 77 1 5 5 5 77 5 77 5 77 4 6 55 111111 6 5 5 5 5 5 66 5 77 5 5 2 5 5 0 000 5 5 0 66 5 5 5 4 55 66 888 777777777777777777777777 4 222222 4 2 2 2 5 3 5 5 5 5 5 333 5 2 5 666 5 5 4 0000000 22 0 5 0 888 2222 000 44444 222222222 5 0 66 66 5 66 5 5 5 5 4 4 00 5 5 66 11 4 4 4 55 4 4 4 4 4 55 4 66 5 5 5 66 888 5 5 33333333333 5 5 5 9999 5 0000 5 22222 5 5 000 6 5 77 999 33 0 0 5 5 77 5 5 5 00 77 77 5 000 000 6 6 6 6 7 99 6
lowQualScore : . . . . . .. . ... ... .. .... . . . ................ . . . . . . .. . ...... . .. . . . . .. . .. . .. . . .. ...... . . . . . . .. . .. . . . . . . ... . . . .. . . . . .. .. ... ........................ . ...... . . . . . . . . . . . ... . . . ... . . . ....... .. . . . ... .... ... ..... ......... . . .. .. . .. . . . . . . .. . . .. .. . . . .. . . . . . .. . .. . . . .. ... . . ........... . . . .... . .... . ..... . . ... . . .. ... .. . . . . .. . . . .. .. .. . ... ... . . . . . .. .
lowQualScore : 6 6 6 0 8 00 7 777 888 99 7777 4 7 7 1111111111111111 7 7 7 7 7 7 66 7 000000 4 99 4 7 7 0 99 7 99 7 99 3 7 88 888888 7 5 7 7 7 7 99 0 55 0 0 2 0 0 0 111 0 0 2 99 0 0 0 0 55 11 222 222222222222222222222222 4 888888 4 5 5 5 0 1 0 0 0 0 0 888 0 5 0 222 0 0 3 3333333 11 7 7 7 222 1111 000 33333 999999999 0 1 99 99 0 99 0 0 0 0 4 4 66 0 0 99 99 4 4 4 88 0 0 0 0 0 55 4 11 0 0 0 99 888 0 0 88888888888 0 0 0 0000 0 1111 0 33333 7 7 000 7 7 99 444 66 7 1 7 7 99 7 7 7 44 99 99 7 000 000 7 7 7 7 5 22 7
consensus : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GGCTTA-TTTA-A--------AGAA-GC-TTA-AAT-TT-CCT-G--TCTT-TGG---A--AGAAAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCACT--GATG---A--TG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-ATTT-CGCAGT-A-GT-AACCATTTTTT-GGAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGGGT-GT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-A-G-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
Reference ( family-158 ) : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GGCTTA--TTA-A--------AGAA-GC-TTA-AAT-TT-CCT-G--TCTT-TGG---A--AGAAAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCACT--GATG---A--TG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-ATTT-CGCAGT-A-GT-AACCATTTTT--GGAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGGGT-GT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-A-G-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
gi|1 : AATAAAATAACTAATGT-CACTGG-TT--AG-AGATGTA---TAAA-TTCTATG-TATCACCCAATCTC-ATCTGTGATTTGGCTTA--TTT-A--------A-AA-G--TTA-AAT-TT-CCT-GG-TCTT-TGA---AG-AAAAAAAA--AGTCCACA-AAATCTTTGC-AAA-GATTGGCAC--T-GAGG--TTGG-ATAGTCCC--CAATGAGAGCATCCACTTGGATG---ACATG-ATGTTAGTCACTGGTGGGCTT-G-GTCCACGAACGAATAA-TTG-GCAT-ATTT-CACAGT-ACGT-AACCATTTTTT-GGAAGATA-TTCCCATATGCAAATTG-TATCCC-TATG-CC-AGATTC-AA--ACGAT--AATACAACC-----------------------AAAAAA-T------ACAGTG-AATGCGGCGGCGTGAAGAGATTGGCAT-GC-ATTCCATCGAACTTG-A---TCTGCCTTTGAGCGTTGCCGTGC-TCATT---ATCAC-TCTC-AGGCCCTTAGAT-AAA-C-T-CATACAAGAC-G-G-TTAAAGGTTCTGTC-CACGATCCAACTTGACGCAA-GTTTTTTTCGTTGTTGTGTTCA---ACT-----TCAA---------T-CT-CACCC--C--GTTTTCAGTCC--GCTTTC-AGCAACCG-TAAATGCCTTCAGATGTCTCTCACATTATCTTTTTGATCGTTTTGGAAAGTATTTA--TTGA-AAAAGGCTTGACAGTCTTGCTATGCATGCC-AATTTA-TTTTTTTAAAAGTTAG-AACTATCGATTTTG-G-CTCC-C--ATG-T--TGTTATGTTA-TTGT---TC-C-TGTA-----------GAA-CGATCCCGAC-T-TT----AAT-GCAGTTC----ATA--------GGGCAAATTACCGAATAATGTTGTGCCTTT-ACATAATTAAT-AAACTT--CTGTC-TGGCTCATTCTGCA-T-TTTT-T--CC-TG-TTCT-TGTTCC---A--AATTTATT---TCAGGAAAAATA-T-TCG--T-C-ACCAATAAGGATTAT-TTTTATG
gi|10 : attattaataaA--AATAA-TTG-GCAT-ATTT-CACAGT-A-GT-AACCGTTTTT--GGAA-ACA-TTCCAATATGTAA--CG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC-------------------------AAAAA-T------ACAGTG-AAT-------------GAAGATGGGGT-GT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCATGC-TCATT---ATCAC-TCTTCAGGCCCTTAGAT-AAA-C-T-CATA-AATAC-A-GCT-AAATGTTCTGTC-CATGCTCCAACTTGACGC
gi|11 : -CTCCACCT--C--GTTTT-AGTCC--GC-TTA-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACACCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-CA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTCCAAAATAACA---T-ACGCAAA-TACCGAATAAT-TTG---C
gi|12 : GCAGATG-G---TAAAAC-CTATGATATCAC--AATCTC-GT-TGTGATT-GGCTT----TA-A---------GAA-GC-TTA-AAT-TT-TCT-G--TCTT-TAGCTGA--AAATAAAAGTAGTC-ACA-AATCTTTTCC-AAAAGAGTGGCAC--T-GAGG--TTGA-ATGGTCCC--CC
gi|13 : AGATGTCTCT-ACATTATC-TTTTGATCG--TTGAAAA-TA-TTA--TTG--AAAAGGTTTGACAGACTTGCTAT-C-TGCC-AATTTA-ATTTCTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--
gi|14 : AAT-AAACTT--CTGTC-T-GCT--TTCTGAATT-TTTTCC--CC-TG-TTCT-TTTTCCTTTA--A--TTT-T---TCAG---AAA
gi|15 : TCTTGCTAT-C-TGCC-AATTTA-ATTATTTAAAAGATAGAAACT-TAGATTTTG-G-CT-C-C--ATG-T--T
gi|2 : ATAAAACAATTA-TGT-AAGTGGCTT--AGCAGATG-G---TAAA-T-CTATTATATCAC--AAT-TC-ATCTGTGATT-GGGCTAATTTA-A--------AGA--GCATTACAGTGTT-CCT-GAGTCTT-TG---------AAGAAA--ATTC-ACAGAATCTTTTGCCAAAAGATTGGCACGTT-GAGGCGTTGGCATGATCCC--C-ATGAGAGCATCCACT--GATGGATA--TGTATG--AGTC-CTGGTGGGCTT-GCGTC---GAA--AATAAATTGAGCAT-ATTT-CGCACTGA-GT-A-CCATTTTTTGAGAA-ATAATTCCAATATGCAA--TGGTATCCCATTTT-CCCAGATTC-AA--ACAACTCA-A-CAACGAAAACAAAAACCAAAAAAAAAAAAAAAAA-CCACCAAACAATG-AATGTGGGG-C-TGGAGAAGA--GAGT-GT--TTCCATCGAACTTG-AAATCCTGCCTTTGGGCGTTTCTGT-C-T-ATT---ATCACAACTCAAGGCCCTTAGAT-AAACC-T-TATA-A
gi|2 : T-CCGATTTTG-GACT-CGC--ATG-TGTTG-CATG-TACT--T---TT-T-TGAT-----------TAA-CGATCCCGACTT-TT--ACAATCGCAGTtagctacggttagatacgttggtgctcctcgcttctctcaaagtcctactgacgcaccgcatcgttcttttgcgttgctgccttatcgccgcgttgcaatcttctttccacgttttcgttcatacggatctctacgacactatttgttcatagtcgtctaaaagcagaactactacattcgtatcatcatcttgattgtgttgtccgattattcgaaaatgtggtccagttgcgttgctatccttggcgataatctatagccaagatactctctctctctctctcctcgtcagcgctttccgattttggactcgcatgtgttgcatgtacttttttgattaacgatcccgacttttacaatcgcagtc
gi|3 : ataaaacaattatgtaagtggcttagcagatggtaaatctattatatcacaattcatctgtgattgggctaatttaaagagcattacagtgttcctgagtctttgaagaaaattcacagaatcttttgccaaaagattggcacgttgaggcgttggcatgatccccatgagagcatccactgatggatatgtatgagtcctggtgggcttgcgtcgaaaataaattgagcatatttcgcactgagtaccattttttgagaaataattccaatatgcaatggtatcccattttcccagattcaaacaactcaacaacgaaaacaaaaaccaaaaaaaaaaaaaaaaaccaccaaacaatgaatgtggggctggagaagagagtgtttccatcgaacttgaaatcctgcctttgggcgtttctgtctattatcacaactcaaggcccttagataaaccttataatagctacggttagatacgttggtgctcctcgcttctctcaaagtcctactgacgcaccgcatcgttcttttgcgttgctgccttatcgccgcgttgcaatcttctttccacgttttcgttcatacggatctctacgacactatttgttcatagtcgtctaaaagcagaactactacattcgtatcatcatcttgattgtgttgtccgattattcgaaaatgtggtccagttgcgttgctatccttggcgataatctatagccaagatactctctctctctctctcctcgtcagcgcttCAATAAA-CAATTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GGCTTA--TTA-ATAATTTAAAGAA-GC-TTA-AAT-TT-CCT-G--TCTTCTGG---A--AGAAAAAA--AATC-ACA-AATCTTTTGC-AAAAGACTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCTCT--GATG---A--TG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-ATTT-TGCAGT-A-GT-AAACATTTT---GGAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGTAGATGGGGT-GT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCATGC-TCATT---ATCAC-TTTCCAGGCCCTTAGAT-AAA---T-CATA-AAGACAA-G-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TTGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAAGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAGGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AAT-ACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-TTCCC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG----AATATT-TCG-AT-CAAC-AATAAGGAT--T-TTTTATGTAc
gi|4 : CAATAAAACA-CTA-TGTTAACTGGCTTTTAGCAGGAG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-AGTGATT-A---------A-A--------AGAA-GC-TTA-AAT-TT-TCTTG--TCTT-TGG---A--AGAAAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGT--TTGG-ATGGTCCC--CCATGAGA-CATCCACTT-GATG---A--TT-ATGTTAGTC-CTGGTGGGCTT-T-GTCCA-GAA--AATAA-TTG--CAT-ATTTTCGCAGT-A-GT-AACCATTTTTT-GGAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAC--A-T-CAAC------------------------AAAAAA-T------GCAGTG-AATGTTGGGGC-TGAAGAAGATGGGGTTGT-ATTTCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGATAAAA-C-T-CAT--AAGAC-AGG-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-G-TTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--ATTTT-AGT-C--GCGTTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCAT--TTTTGATCA--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTAA-TTTTTTTAAAAGATAGAAACT-TCGATTTT--G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TC-T-GGTA-----------TAA-CGATCCCGAC-T-TTTAA-AAT-GCAGTTC---AATAACATATT-ACGCAAA-TACCGAATAA--TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TGTTTCT-TTTTCCTCTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-GAACAAATAAGGAT--T-TTTTATGTA
gi|5 : ttaaCAATAAA-CA-CTAATGT-A-CTGGCGT--AGCAGATA-GGTATAAA-T--TATGATATCAC--AATCTC-CT-TG----T-GCCGTAATTTA-AC-------AGAATGC-TTA-AAT-TT-CCT-G--TC-T-TGG---AAGAGAAAAAA--AGTC-AC---ATCTTTTGC-AAAAGACTTGCAC--TCGAAG--TTGG-ATATTCCC--CATTGAGAGCATCCACT--GATG---A--TG-ATG-TAGTC-CTGGTGGG-TT-G-GTCCA-GAA--AAT-A-TTG-GCATCATTT-CACAGT-A-TTAAACCGTTTTT--GGAA-ACA-TTCCAATATGTAA--CG-T-TCCC-TATTGCCCAGATTCAAA--ACG-T--A-T-TATC------------------------ACAAAATT------ACAGTG-AAT-------------GAAGATGGGGT-GTAATTCCATCG-ACTTGAAA-TCCT--CCTTGAG-GGTTCCATGC--CATT---ATCAC-TCTTCAGG-CCTTA-AT-AAA-CTT-CATA-AATAC-A---T-AAATGTTC--TT-CATGCTCCAACTTGACGCAA-G-TTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTC--CCT--C--GTTTA-CGTTCCGGC-TTCAAGCAACCGCT-ACTGCC-TCAGATGTCTCT-ACATATTT-TTTTGATCAT-TTGGAAA-TA-TTGATTTG--AAAAAGCTTGA-AGTCTTGCTAT-C-TGC---ACTTATTTTTTTTATAAGAT-GAAA-T-TCGATTTTGCG-CT-C-CAAATGTT--TG-TATG-TA-T--T---TTCC-TGTA-----------TAA-CGATCCCGAC-TCTT--A-AAT-GCAGTTC---AAT-ATA---TAACGC--A-T-CTGAAT-AT-TTG---CTCTAACAT-ATAAAT-AAACTT---TGTCTT-GCT--TTCTGCATT-TTTT-T--TCATG-TTCTATTTTGCTTTA--A--TTA-T---T-AG---AAATA-TATCGAAT-CAACAAA-AAAGAT--T-TTTTg
gi|6 : aAGTC-CTGGCG--CTTTG-GTCCA-GAA--AATAA-TTG--CAT-ATTT-C-CAGT-A-GT-AACCATTTT----GAA-ATA-TTCCAAGATG-AA--TG-TA-CCC-TATT-C--ATATTC-AA--ACGAC--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGTGGC-GGAAGAAGAT-GGGT-GT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCATTTCCGTGCTTCATTA--ATCAC-TCTCCAGG-CCTTAGAT-AAA-C-TACATA-AA-----------------CT----TACG---CAAGTT---------TTT-------CGT-GTGTTCA---ACT-----TCAA---------T-CTCCATTT--TCGGTTTG-AGTCA--GCTTTC-AGCAACCG-T-AAGGCCTGC-GATGTCTCT-ACATCAAT-CTTTGATCG--TT-GAAA-TA-TTA---TGAAAAAAGGCTTGACAGTCTTGC-AT-C-TGCCAAATTTA-GATTTTTAAAAGATAGAAACT-TCGATTTGT-G-CT-C-C--AT--T--TG-CAT--TA-T--TTAATT-CGTGTGCGACTACTCATTAACCTATCCCG---C-TT--A-AAT-GCAGTTC---GATAACT---C-GC-CAAA-TACTGAA-AAT-GTG---CTAT-ACACAA-TAATCACACTCAGCTATC----CTG-TTCTG-ACT-TCTC-T--C---A-TTAT-TACCCCCATATTA--TTA-TCTATCAG---AAA-A-T-TCA-ATACAACTAGTAAGTAT--TACTTTATtg
gi|7 : taTTC-AAGAACGAT--A---CATC------------------------AAAGA--T------ACAGTGGAATGTGGGGGC-TGA----GATGGGGT-GT-ATTCCATGGAACTTG-AA-TCCTGCCTTTGA-CGTTCCCATGC-TCATTGATATCAC-TTTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-AAG-T-AA-GGTTCTGTCGCTCGCTCCAACTTGACGCAAAGTTTTT----TCGTTGT--TCATGGACTATGTGTCAAGCTGAAGTCTGCTCC-CCTGAC--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGGCTTCAGATGTATCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTA--AAAAAGCTTGACAGTCTTGCTAT-C-TGCC-AATTCA-ATTTTATAAAGGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATTATTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-ACG-AT-CAACAAATAAGGAT--T-TTTTATGTAa
gi|8 : CCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------AC--TG-AAT
gi|8 : ----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTATT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCC-ACATCATC-TTTTGATCG--TTGannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttgtgttcaacttcaatctccacctcgtattagtccgcttcagcaaccgtaatgccttcagatgtctccacatcatcttttgatcgttg
gi|9 : ccagattcaaacgatatcaacaaaaaatactgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATATCAC--A-TCTCCA-----AATT-GGCTTACTTTATA--------AGAA-GC-TTA-AAT-TTTCCT-G--TCTT-TGG---A--AAGAAAAA--AGTCCACA-AATCTTTTGC-AAA-GAT-GGCAC--T-GAGG--TTG--ATGGTCCCAGCCATGAGA-CATCCACT--GATG---A--TG--TG--AGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-ATTT-TGCAGT-A-GTGAAACA-TTTT--GGAA-ATA-TTCCAATAT-CAA--TG-TAT-CC-TATT-CCCAGATCC-AA--ACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTATTTCGAAATAATATAGAAAAACAAAAGATTGTTA
Alignments
lowQualScore : 1 1 1 11 111 1111 2222222222222222 11 11111 1 111111 11 444444444444444444444444 111111 111 2222222 1111 111 11111 222222222 1 11 11 22222222222 1111 11111 111 11 111 111
lowQualScore : 0 0 0 8 0 11 6 111 666 77 1111 5 4444444444444444 5 5 5 5 5 5 5 5 33 5 00000 0 77 77 1 5 5 5 77 5 77 5 77 4 6 6 99 111111 6 44 5 5 5 5 66 5 5 5 5 2 5 5 5 0 66 5 5 5 0 66 5 5 5 4 55 66 888 777777777777777777777777 4 222222 4 2 2 2 5 3 5 5 5 5 5 333 5 2 5 666 5 5 4 0000000 22 0 5 0 888 2222 000 44444 222222222 5 0 66 66 5 66 5 5 5 5 4 4 00 5 5 66 11 4 4 4 55 4 4 4 4 4 55 4 66 5 5 5 66 888 5 5 33333333333 5 5 5 9999 5 0000 5 22222 5 5 000 6 5 77 999 33 0 0 5 5 77 5 5 5 00 77 77 5 000 000 6 6 6 6 7 99 6
lowQualScore : . . . . . .. . ... ... .. .... . ................ . . . . . . . . .. . ..... . .. .. . . . . .. . .. . .. . . . .. ...... . .. . . . . .. . . . . . . . . . .. . . . . .. . . . . .. .. ... ........................ . ...... . . . . . . . . . . . ... . . . ... . . . ....... .. . . . ... .... ... ..... ......... . . .. .. . .. . . . . . . .. . . .. .. . . . .. . . . . . .. . .. . . . .. ... . . ........... . . . .... . .... . ..... . . ... . . .. ... .. . . . . .. . . . .. .. .. . ... ... . . . . . .. .
lowQualScore : 6 6 6 0 8 00 7 777 888 99 7777 7 9999999999999999 7 7 7 7 7 7 7 7 66 7 11111 4 99 99 4 7 7 0 99 7 99 7 99 3 7 7 22 888888 7 55 7 7 7 7 99 0 0 0 0 2 0 0 0 1 44 0 0 0 2 99 0 0 0 0 55 11 222 222222222222222222222222 4 888888 4 5 5 5 0 1 0 0 0 0 0 888 0 5 0 222 0 0 3 3333333 11 7 7 7 222 1111 000 33333 999999999 0 1 99 99 0 99 0 0 0 0 4 4 66 0 0 99 99 4 4 4 88 0 0 0 0 0 55 4 11 0 0 0 99 888 0 0 88888888888 0 0 0 0000 0 1111 0 33333 7 7 000 7 7 99 444 66 7 1 7 7 99 7 7 7 44 99 99 7 000 000 7 7 7 7 5 22 7
consensus : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GG-CTTA-TT-------TA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTT-TGG---A-AGA--AAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCAC-T--GATG---A--TG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTCGCAGT-A-GT-AACCATTTTTTG-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-A-G-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
Reference ( family-158 ) : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GG-CTTA-TT-------TA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTT-TGG---A-AGA--AAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCAC-T--GATG---A--TG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTCGCAGT-A-GT-AACCATTTTTTG-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-A-G-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
gi|1 : AATAAAATAACTAATGT-CACTGG-TT--AG-AGATGTA---TAAA-TTCTATG-TATCACCCAATCTC-ATCTGTGATTTGG-CTTA-TT-------TA-A-A--A-G--TTA-AAT-TT-CCT-GG-TCTT-TGA---AGAAA--AAAAA--AGTCCACA-AAATCTTTGC-AAA-GATTGGCAC--T-GAGG--TTGG-ATAGTCCC--CAATGAGAGCATCCAC-TTGGATG---ACATG-ATGTTAGTCACTGGTGGGCTT-G-GTCCACGAACGAATAA-TTG-GCAT-A-TTTCACAGT-ACGT-AACCATTTTTTG-GAAGATA-TTCCCATATGCAAATTG-TATCCC-TATG-CC-AGATTC-AA--ACGAT--AATACAACC-----------------------AAAAAA-T------ACAGTG-AATGCGGCGGCGTGAAGAGATTGGCA-TGC-ATTCCATCGAACTTG-A---TCTGCCTTTGAGCGTTGCCGTGC-TCATT---ATCAC-TCTC-AGGCCCTTAGAT-AAA-C-T-CATACAAGAC-G-G-TTAAAGGTTCTGTC-CACGATCCAACTTGACGCAA-GTTTTTTTCGTTGTTGTGTTCA---ACT-----TCAA---------T-CT-CACCC--C--GTTTTCAGTCC--GCTTTC-AGCAACCG-TAAATGCCTTCAGATGTCTCTCACATTATCTTTTTGATCGTTTTGGAAAGTATTTA--TTGA-AAAAGGCTTGACAGTCTTGCTATGCATGCC-AATTTA-TTTTTTTAAAAGTTAG-AACTATCGATTTTG-G-CTCC-C--ATG-T--TGTTATGTTA-TTGT---TC-C-TGTA-----------GAA-CGATCCCGAC-T-TT----AAT-GCAGTTC----ATA--------GGGCAAATTACCGAATAATGTTGTGCCTTT-ACATAATTAAT-AAACTT--CTGTC-TGGCTCATTCTGCA-T-TTTT-T--CC-TG-TTCT-TGTTCC---A--AATTTATT---TCAGGAAAAATA-T-TCG--T-C-ACCAATAAGGATTAT-TTTTATG
gi|10 : attattaataaA--AATAA-TTG-GCAT-A-TTTCACAGT-A-GT-AACCGTTTTT-G-GAA-ACA-TTCCAATATGTAA--CG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC-------------------------AAAAA-T------ACAGTG-AAT-------------GAAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCATGC-TCATT---ATCAC-TCTTCAGGCCCTTAGAT-AAA-C-T-CATA-AATAC-A-GCT-AAATGTTCTGTC-CATGCTCCAACTTGACGC
gi|11 : -CTCCACCT--C--GTTTT-AGTCC--GC-TTA-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACACCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-CA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTCCAAAATAACA---T-ACGCAAA-TACCGAATAAT-TTG---C
gi|12 : GCAGATG-G---TAAAAC-CTATGATATCAC--AATCTC-GT-TGTGATT-GG-CTT-----------TA-A--GAA-GC-TTA-AAT-TT-TCT-G--TCTT-TAGCTGA-AAA--TAAAAGTAGTC-ACA-AATCTTTTCC-AAAAGAGTGGCAC--T-GAGG--TTGA-ATGGTCCC--CC
gi|13 : AGATGTCTCT-ACATTATC-TTTTGATCG--TTGAAAA-TA-TTA--TTG--AAAAGGTTTGACAGACTTGCTAT-C-TGCC-AATTTA-ATTTCTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--
gi|14 : AAT-AAACTT--CTGTC-T-GCT--TTCTGAATT-TTTTCC--CC-TG-TTCT-TTTTCCTTTA--A--TTT-T---TCAG---AAA
gi|15 : TCTTGCTAT-C-TGCC-AATTTA-ATTATTTAAAAGATAGAAACT-TAGATTTTG-G-CT-C-C--ATG-T--T
gi|2 : ATAAAACAATTA-TGT-AAGTGGCTT--AGCAGATG-G---TAAA-T-CTATTATATCAC--AAT-TC-ATCTGTGATT-GGGCTAA-TT-------TA-A-AGA--GCATTACAGTGTT-CCT-GAGTCTT-TG--------A--AGAAA--ATTC-ACAGAATCTTTTGCCAAAAGATTGGCACGTT-GAGGCGTTGGCATGATCCC--C-ATGAGAGCATCCAC-T--GATGGATA--TGTATG--AGTC-CTGGTGGGCTT-GCGTC---GAA--AATAAATTGAGCAT-A-TTTCGCACTGA-GT-A-CCATTTTTTGAGAA-ATAATTCCAATATGCAA--TGGTATCCCATTTT-CCCAGATTC-AA--ACAACTCA-A-CAACGAAAACAAAAACCAAAAAAAAAAAAAAAAA-CCACCAAACAATG-AATGTGGGG-C-TGGAGAAGA--GAG-TGT--TTCCATCGAACTTG-AAATCCTGCCTTTGGGCGTTTCTGT-C-T-ATT---ATCACAACTCAAGGCCCTTAGAT-AAACC-T-TATA-A
gi|2 : T-CCGATTTTG-GACT-CGC--ATG-TGTTG-CATG-TACT--T---TT-T-TGAT-----------TAA-CGATCCCGACTT-TT--ACAATCGCAGTtagctacggttagatacgttggtgctcctcgcttctctcaaagtcctactgacgcaccgcatcgttcttttgcgttgctgccttatcgccgcgttgcaatcttctttccacgttttcgttcatacggatctctacgacactatttgttcatagtcgtctaaaagcagaactactacattcgtatcatcatcttgattgtgttgtccgattattcgaaaatgtggtccagttgcgttgctatccttggcgataatctatagccaagatactctctctctctctctcctcgtcagcgctttccgattttggactcgcatgtgttgcatgtacttttttgattaacgatcccgacttttacaatcgcagtc
gi|3 : ataaaacaattatgtaagtggcttagcagatggtaaatctattatatcacaattcatctgtgattgggctaatttaaagagcattacagtgttcctgagtctttgaagaaaattcacagaatcttttgccaaaagattggcacgttgaggcgttggcatgatccccatgagagcatccactgatggatatgtatgagtcctggtgggcttgcgtcgaaaataaattgagcatatttcgcactgagtaccattttttgagaaataattccaatatgcaatggtatcccattttcccagattcaaacaactcaacaacgaaaacaaaaaccaaaaaaaaaaaaaaaaaccaccaaacaatgaatgtggggctggagaagagagtgtttccatcgaacttgaaatcctgcctttgggcgtttctgtctattatcacaactcaaggcccttagataaaccttataatagctacggttagatacgttggtgctcctcgcttctctcaaagtcctactgacgcaccgcatcgttcttttgcgttgctgccttatcgccgcgttgcaatcttctttccacgttttcgttcatacggatctctacgacactatttgttcatagtcgtctaaaagcagaactactacattcgtatcatcatcttgattgtgttgtccgattattcgaaaatgtggtccagttgcgttgctatccttggcgataatctatagccaagatactctctctctctctctcctcgtcagcgcttCAATAAA-CAATTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GG-CTTA-TTAATAATTTA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTTCTGG---A-AGA--AAAAA--AATC-ACA-AATCTTTTGC-AAAAGACTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCTC-T--GATG---A--TG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTTGCAGT-A-GT-AAACATTTT--G-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGTAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCATGC-TCATT---ATCAC-TTTCCAGGCCCTTAGAT-AAA---T-CATA-AAGACAA-G-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TTGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAAGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAGGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AAT-ACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-TTCCC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG----AATATT-TCG-AT-CAAC-AATAAGGAT--T-TTTTATGTAc
gi|4 : CAATAAAACA-CTA-TGTTAACTGGCTTTTAGCAGGAG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-AGTGATT-A-----------------A-A-AGAA-GC-TTA-AAT-TT-TCTTG--TCTT-TGG---A-AGA--AAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGT--TTGG-ATGGTCCC--CCATGAGA-CATCCACTT--GATG---A--TT-ATGTTAGTC-CTGGTGGGCTT-T-GTCCA-GAA--AATAA-TT--GCAT-ATTTTCGCAGT-A-GT-AACCATTTTTTG-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAC--A-T-CAAC------------------------AAAAAA-T------GCAGTG-AATGTTGGGGC-TGAAGAAGATGGGGTTGT-ATTTCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGATAAAA-C-T-CAT--AAGAC-AGG-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-G-TTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--ATTTT-AGT-C--GCGTTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCAT--TTTTGATCA--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTAA-TTTTTTTAAAAGATAGAAACT-TCGATTTT--G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TC-T-GGTA-----------TAA-CGATCCCGAC-T-TTTAA-AAT-GCAGTTC---AATAACATATT-ACGCAAA-TACCGAATAA--TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TGTTTCT-TTTTCCTCTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-GAACAAATAAGGAT--T-TTTTATGTA
gi|5 : ttaaCAATAAA-CA-CTAATGT-A-CTGGCGT--AGCAGATA-GGTATAAA-T--TATGATATCAC--AATCTC-CT-TGTG-CC-G---TAA-TT-------TA-ACAGAATGC-TTA-AAT-TT-CCT-G--TCTT--GG---A-AGAGAAAAAA--AGTC-ACA---TCTTTTGC-AAAAGACTTGCAC--TCGAAG--TTGG-ATATTCCC--CATTGAGAGCATCCAC-T--GATG---A--TG-ATGT-AGTC-CTGGTGGG-TT-G-GTCCA-GAA--AAT-A-TTG-GCATCA-TTTCACAGT-A-TT-AAACCGTTTTTG-GAA-ACA-TTCCAATATGTAA--CG-T-TCCC-TATTGCCCAGATTCAAA--ACG-T--A-T-TATC------------------------ACAAAATT------ACAGTG-AAT-------------GAAGATGGGG-TGTAATTCCATCG-ACTTGAAA-TCCT--CCTTGAG-GGTTCCATGC--CATT---ATCAC-TCTTCAGG-CCTTA-AT-AAA-CTT-CATA-AATAC-A---T-AAATGTTC--TT-CATGCTCCAACTTGACGCAA-G-TTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTC--CCT--C--GTTTA-CGTTCCGGC-TTCAAGCAACCGCT-ACTGCC-TCAGATGTCTCT-ACATATTT-TTTTGATCAT-TTGGAAA-TA-TTGATTTG--AAAAAGCTTGA-AGTCTTGCTAT-C-TGC---ACTTATTTTTTTTATAAGAT-GAAA-T-TCGATTTTGCG-CT-C-CAAATGTT--TG-TATG-TA-T--T---TTCC-TGTA-----------TAA-CGATCCCGAC-TCTT--A-AAT-GCAGTTC---AAT-ATA---TAACGC--A-T-CTGAAT-AT-TTG---CTCTAACAT-ATAAAT-AAACTT---TGTCTT-GCT--TTCTGCATT-TTTT-T--TCATG-TTCTATTTTGCTTTA--A--TTA-T---T-AG---AAATA-TATCGAAT-CAACAAA-AAAGAT--T-TTTTg
gi|6 : aAGTC-CTGGCG--CTTTG-GTCCA-GAA--AATAA-TTG--CAT-A-TTTC-CAGT-A-GT-AACCATTTT----GAA-ATA-TTCCAAGATG-AA--TG-TA-CCC-TATT-C--ATATTC-AA--ACGAC--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGTGGC-GGAAGAAGAT-GGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCATTTCCGTGCTTCATTA--ATCAC-TCTCCAGG-CCTTAGAT-AAA-C-TACATA-AA-----------------CT----TACG---CAAGTT---------TTT-------CGT-GTGTTCA---ACT-----TCAA---------T-CTCCATTT--TCGGTTTG-AGTCA--GCTTTC-AGCAACCG-T-AAGGCCTGC-GATGTCTCT-ACATCAAT-CTTTGATCG--TT-GAAA-TA-TTA---TGAAAAAAGGCTTGACAGTCTTGC-AT-C-TGCCAAATTTA-GATTTTTAAAAGATAGAAACT-TCGATTTGT-G-CT-C-C--AT--T--TG-CAT--TA-T--TTAATT-CGTGTGCGACTACTCATTAACCTATCCCG---C-TT--A-AAT-GCAGTTC---GATAACT---C-GC-CAAA-TACTGAA-AAT-GTG---CTAT-ACACAA-TAATCACACTCAGCTATC----CTG-TTCTG-ACT-TCTC-T--C---A-TTAT-TACCCCCATATTA--TTA-TCTATCAG---AAA-A-T-TCA-ATACAACTAGTAAGTAT--TACTTTATtg
gi|7 : taTTC-AAGAACGAT--A---CATC------------------------AAAGA--T------ACAGTGGAATGTGGGGGC-TGA----GATGGGG-TGT-ATTCCATGGAACTTG-AA-TCCTGCCTTTGA-CGTTCCCATGC-TCATTGATATCAC-TTTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-AAG-T-AA-GGTTCTGTCGCTCGCTCCAACTTGACGCAAAGTTTTT----TCGTTGT--TCATGGACTATGTGTCAAGCTGAAGTCTGCTCC-CCTGAC--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGGCTTCAGATGTATCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTA--AAAAAGCTTGACAGTCTTGCTAT-C-TGCC-AATTCA-ATTTTATAAAGGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATTATTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-ACG-AT-CAACAAATAAGGAT--T-TTTTATGTAa
gi|8 : CCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------AC--TG-AAT
gi|8 : ----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTATT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCC-ACATCATC-TTTTGATCG--TTGannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttgtgttcaacttcaatctccacctcgtattagtccgcttcagcaaccgtaatgccttcagatgtctccacatcatcttttgatcgttg
gi|9 : ccagattcaaacgatatcaacaaaaaatactgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATATCAC--A-TCTCCA-----AATT-GG-CTTACTT-------TATA-AGAA-GC-TTA-AAT-TTTCCT-G--TCTT-TGG---A-AAG--AAAAA--AGTCCACA-AATCTTTTGC-AAA-GAT-GGCAC--T-GAGG--TTG--ATGGTCCCAGCCATGAGA-CATCCAC-T--GATG---A--TG--TG--AGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTTGCAGT-A-GTGAAACA--TTTTG-GAA-ATA-TTCCAATAT-CAA--TG-TAT-CC-TATT-CCCAGATCC-AA--ACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTATTTCGAAATAATATAGAAAAACAAAAGATTGTTA
Alignments
lowQualScore : 1 1 1 11 111 1111 2222222222222222 11 11111 1 111111 11 444444444444444444444444 111111 111 2222222 1111 111 11111 222222222 1 11 11 22222222222 1111 11111 111 11 111 111
lowQualScore : 0 0 0 8 0 11 6 111 666 77 1111 5 4444444444444444 5 5 5 5 5 5 5 5 33 5 00000 0 77 77 1 5 5 5 77 5 77 5 77 4 6 6 99 111111 6 44 5 5 5 5 66 5 5 5 5 2 5 5 5 0 66 5 5 5 0 66 5 5 5 4 55 66 888 777777777777777777777777 4 222222 4 2 2 2 5 3 5 5 5 5 5 333 5 2 5 666 5 5 4 0000000 22 0 5 0 888 2222 000 44444 222222222 5 0 66 66 5 66 5 5 5 5 4 4 00 5 5 66 11 4 4 4 55 4 4 4 4 4 55 4 66 5 5 5 66 888 5 5 33333333333 5 5 5 9999 5 0000 5 22222 5 5 000 6 5 77 999 33 0 0 5 5 77 5 5 5 00 77 77 5 000 000 6 6 6 6 7 99 6
lowQualScore : . . . . . .. . ... ... .. .... . ................ . . . . . . . . .. . ..... . .. .. . . . . .. . .. . .. . . . .. ...... . .. . . . . .. . . . . . . . . . .. . . . . .. . . . . .. .. ... ........................ . ...... . . . . . . . . . . . ... . . . ... . . . ....... .. . . . ... .... ... ..... ......... . . .. .. . .. . . . . . . .. . . .. .. . . . .. . . . . . .. . .. . . . .. ... . . ........... . . . .... . .... . ..... . . ... . . .. ... .. . . . . .. . . . .. .. .. . ... ... . . . . . .. .
lowQualScore : 6 6 6 0 8 00 7 777 888 99 7777 7 9999999999999999 7 7 7 7 7 7 7 7 66 7 11111 4 99 99 4 7 7 0 99 7 99 7 99 3 7 7 22 888888 7 55 7 7 7 7 99 0 0 0 0 2 0 0 0 1 44 0 0 0 2 99 0 0 0 0 55 11 222 222222222222222222222222 4 888888 4 5 5 5 0 1 0 0 0 0 0 888 0 5 0 222 0 0 3 3333333 11 7 7 7 222 1111 000 33333 999999999 0 1 99 99 0 99 0 0 0 0 4 4 66 0 0 99 99 4 4 4 88 0 0 0 0 0 55 4 11 0 0 0 99 888 0 0 88888888888 0 0 0 0000 0 1111 0 33333 7 7 000 7 7 99 444 66 7 1 7 7 99 7 7 7 44 99 99 7 000 000 7 7 7 7 5 22 7
consensus : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GG-CTTA-TT-------TA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTT-TGG---A-AGA--AAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCAC-T--GATG---A--TG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTCGCAGT-A-GT-AACCATTTTTTG-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-A-G-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
Reference ( family-158 ) : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GG-CTTA-TT-------TA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTT-TGG---A-AGA--AAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCAC-T--GATG---A--TG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTCGCAGT-A-GT-AACCATTTTTTG-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-A-G-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
gi|1 : AATAAAATAACTAATGT-CACTGG-TT--AG-AGATGTA---TAAA-TTCTATG-TATCACCCAATCTC-ATCTGTGATTTGG-CTTA-TT-------TA-A-A--A-G--TTA-AAT-TT-CCT-GG-TCTT-TGA---AGAAA--AAAAA--AGTCCACA-AAATCTTTGC-AAA-GATTGGCAC--T-GAGG--TTGG-ATAGTCCC--CAATGAGAGCATCCAC-TTGGATG---ACATG-ATGTTAGTCACTGGTGGGCTT-G-GTCCACGAACGAATAA-TTG-GCAT-A-TTTCACAGT-ACGT-AACCATTTTTTG-GAAGATA-TTCCCATATGCAAATTG-TATCCC-TATG-CC-AGATTC-AA--ACGAT--AATACAACC-----------------------AAAAAA-T------ACAGTG-AATGCGGCGGCGTGAAGAGATTGGCA-TGC-ATTCCATCGAACTTG-A---TCTGCCTTTGAGCGTTGCCGTGC-TCATT---ATCAC-TCTC-AGGCCCTTAGAT-AAA-C-T-CATACAAGAC-G-G-TTAAAGGTTCTGTC-CACGATCCAACTTGACGCAA-GTTTTTTTCGTTGTTGTGTTCA---ACT-----TCAA---------T-CT-CACCC--C--GTTTTCAGTCC--GCTTTC-AGCAACCG-TAAATGCCTTCAGATGTCTCTCACATTATCTTTTTGATCGTTTTGGAAAGTATTTA--TTGA-AAAAGGCTTGACAGTCTTGCTATGCATGCC-AATTTA-TTTTTTTAAAAGTTAG-AACTATCGATTTTG-G-CTCC-C--ATG-T--TGTTATGTTA-TTGT---TC-C-TGTA-----------GAA-CGATCCCGAC-T-TT----AAT-GCAGTTC----ATA--------GGGCAAATTACCGAATAATGTTGTGCCTTT-ACATAATTAAT-AAACTT--CTGTC-TGGCTCATTCTGCA-T-TTTT-T--CC-TG-TTCT-TGTTCC---A--AATTTATT---TCAGGAAAAATA-T-TCG--T-C-ACCAATAAGGATTAT-TTTTATG
gi|10 : attattaataaA--AATAA-TTG-GCAT-A-TTTCACAGT-A-GT-AACCGTTTTT-G-GAA-ACA-TTCCAATATGTAA--CG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC-------------------------AAAAA-T------ACAGTG-AAT-------------GAAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCATGC-TCATT---ATCAC-TCTTCAGGCCCTTAGAT-AAA-C-T-CATA-AATAC-A-GCT-AAATGTTCTGTC-CATGCTCCAACTTGACGC
gi|11 : -CTCCACCT--C--GTTTT-AGTCC--GC-TTA-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACACCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-CA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTCCAAAATAACA---T-ACGCAAA-TACCGAATAAT-TTG---C
gi|12 : GCAGATG-G---TAAAAC-CTATGATATCAC--AATCTC-GT-TGTGATT-GG-CTT-----------TA-A--GAA-GC-TTA-AAT-TT-TCT-G--TCTT-TAGCTGA-AAA--TAAAAGTAGTC-ACA-AATCTTTTCC-AAAAGAGTGGCAC--T-GAGG--TTGA-ATGGTCCC--CC
gi|13 : AGATGTCTCT-ACATTATC-TTTTGATCG--TTGAAAA-TA-TTA--TTG--AAAAGGTTTGACAGACTTGCTAT-C-TGCC-AATTTA-ATTTCTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--
gi|14 : AAT-AAACTT--CTGTC-T-GCT--TTCTGAATT-TTTTCC--CC-TG-TTCT-TTTTCCTTTA--A--TTT-T---TCAG---AAA
gi|15 : TCTTGCTAT-C-TGCC-AATTTA-ATTATTTAAAAGATAGAAACT-TAGATTTTG-G-CT-C-C--ATG-T--T
gi|2 : ATAAAACAATTA-TGT-AAGTGGCTT--AGCAGATG-G---TAAA-T-CTATTATATCAC--AAT-TC-ATCTGTGATT-GGGCTAA-TT-------TA-A-AGA--GCATTACAGTGTT-CCT-GAGTCTT-TG--------A--AGAAA--ATTC-ACAGAATCTTTTGCCAAAAGATTGGCACGTT-GAGGCGTTGGCATGATCCC--C-ATGAGAGCATCCAC-T--GATGGATA--TGTATG--AGTC-CTGGTGGGCTT-GCGTC---GAA--AATAAATTGAGCAT-A-TTTCGCACTGA-GT-A-CCATTTTTTGAGAA-ATAATTCCAATATGCAA--TGGTATCCCATTTT-CCCAGATTC-AA--ACAACTCA-A-CAACGAAAACAAAAACCAAAAAAAAAAAAAAAAA-CCACCAAACAATG-AATGTGGGG-C-TGGAGAAGA--GAG-TGT--TTCCATCGAACTTG-AAATCCTGCCTTTGGGCGTTTCTGT-C-T-ATT---ATCACAACTCAAGGCCCTTAGAT-AAACC-T-TATA-A
gi|2 : T-CCGATTTTG-GACT-CGC--ATG-TGTTG-CATG-TACT--T---TT-T-TGAT-----------TAA-CGATCCCGACTT-TT--ACAATCGCAGTtagctacggttagatacgttggtgctcctcgcttctctcaaagtcctactgacgcaccgcatcgttcttttgcgttgctgccttatcgccgcgttgcaatcttctttccacgttttcgttcatacggatctctacgacactatttgttcatagtcgtctaaaagcagaactactacattcgtatcatcatcttgattgtgttgtccgattattcgaaaatgtggtccagttgcgttgctatccttggcgataatctatagccaagatactctctctctctctctcctcgtcagcgctttccgattttggactcgcatgtgttgcatgtacttttttgattaacgatcccgacttttacaatcgcagtc
gi|3 : ataaaacaattatgtaagtggcttagcagatggtaaatctattatatcacaattcatctgtgattgggctaatttaaagagcattacagtgttcctgagtctttgaagaaaattcacagaatcttttgccaaaagattggcacgttgaggcgttggcatgatccccatgagagcatccactgatggatatgtatgagtcctggtgggcttgcgtcgaaaataaattgagcatatttcgcactgagtaccattttttgagaaataattccaatatgcaatggtatcccattttcccagattcaaacaactcaacaacgaaaacaaaaaccaaaaaaaaaaaaaaaaaccaccaaacaatgaatgtggggctggagaagagagtgtttccatcgaacttgaaatcctgcctttgggcgtttctgtctattatcacaactcaaggcccttagataaaccttataatagctacggttagatacgttggtgctcctcgcttctctcaaagtcctactgacgcaccgcatcgttcttttgcgttgctgccttatcgccgcgttgcaatcttctttccacgttttcgttcatacggatctctacgacactatttgttcatagtcgtctaaaagcagaactactacattcgtatcatcatcttgattgtgttgtccgattattcgaaaatgtggtccagttgcgttgctatccttggcgataatctatagccaagatactctctctctctctctcctcgtcagcgcttCAATAAA-CAATTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GG-CTTA-TTAATAATTTA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTTCTGG---A-AGA--AAAAA--AATC-ACA-AATCTTTTGC-AAAAGACTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCTC-T--GATG---A--TG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTTGCAGT-A-GT-AAACATTTT--G-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGTAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCATGC-TCATT---ATCAC-TTTCCAGGCCCTTAGAT-AAA---T-CATA-AAGACAA-G-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TTGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAAGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAGGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AAT-ACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-TTCCC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG----AATATT-TCG-AT-CAAC-AATAAGGAT--T-TTTTATGTAc
gi|4 : CAATAAAACA-CTA-TGTTAACTGGCTTTTAGCAGGAG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-AGTGATT-A-----------------A-A-AGAA-GC-TTA-AAT-TT-TCTTG--TCTT-TGG---A-AGA--AAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGT--TTGG-ATGGTCCC--CCATGAGA-CATCCACTT--GATG---A--TT-ATGTTAGTC-CTGGTGGGCTT-T-GTCCA-GAA--AATAA-TT--GCAT-ATTTTCGCAGT-A-GT-AACCATTTTTTG-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAC--A-T-CAAC------------------------AAAAAA-T------GCAGTG-AATGTTGGGGC-TGAAGAAGATGGGGTTGT-ATTTCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGATAAAA-C-T-CAT--AAGAC-AGG-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-G-TTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--ATTTT-AGT-C--GCGTTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCAT--TTTTGATCA--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTAA-TTTTTTTAAAAGATAGAAACT-TCGATTTT--G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TC-T-GGTA-----------TAA-CGATCCCGAC-T-TTTAA-AAT-GCAGTTC---AATAACATATT-ACGCAAA-TACCGAATAA--TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TGTTTCT-TTTTCCTCTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-GAACAAATAAGGAT--T-TTTTATGTA
gi|5 : ttaaCAATAAA-CA-CTAATGT-A-CTGGCGT--AGCAGATA-GGTATAAA-T--TATGATATCAC--AATCTC-CT-TGTG-CC-G---TAA-TT-------TA-ACAGAATGC-TTA-AAT-TT-CCT-G--TCTT--GG---A-AGAGAAAAAA--AGTC-ACA---TCTTTTGC-AAAAGACTTGCAC--TCGAAG--TTGG-ATATTCCC--CATTGAGAGCATCCAC-T--GATG---A--TG-ATGT-AGTC-CTGGTGGG-TT-G-GTCCA-GAA--AAT-A-TTG-GCATCA-TTTCACAGT-A-TT-AAACCGTTTTTG-GAA-ACA-TTCCAATATGTAA--CG-T-TCCC-TATTGCCCAGATTCAAA--ACG-T--A-T-TATC------------------------ACAAAATT------ACAGTG-AAT-------------GAAGATGGGG-TGTAATTCCATCG-ACTTGAAA-TCCT--CCTTGAG-GGTTCCATGC--CATT---ATCAC-TCTTCAGG-CCTTA-AT-AAA-CTT-CATA-AATAC-A---T-AAATGTTC--TT-CATGCTCCAACTTGACGCAA-G-TTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTC--CCT--C--GTTTA-CGTTCCGGC-TTCAAGCAACCGCT-ACTGCC-TCAGATGTCTCT-ACATATTT-TTTTGATCAT-TTGGAAA-TA-TTGATTTG--AAAAAGCTTGA-AGTCTTGCTAT-C-TGC---ACTTATTTTTTTTATAAGAT-GAAA-T-TCGATTTTGCG-CT-C-CAAATGTT--TG-TATG-TA-T--T---TTCC-TGTA-----------TAA-CGATCCCGAC-TCTT--A-AAT-GCAGTTC---AAT-ATA---TAACGC--A-T-CTGAAT-AT-TTG---CTCTAACAT-ATAAAT-AAACTT---TGTCTT-GCT--TTCTGCATT-TTTT-T--TCATG-TTCTATTTTGCTTTA--A--TTA-T---T-AG---AAATA-TATCGAAT-CAACAAA-AAAGAT--T-TTTTg
gi|6 : aAGTC-CTGGCG--CTTTG-GTCCA-GAA--AATAA-TTG--CAT-A-TTTC-CAGT-A-GT-AACCATTTT----GAA-ATA-TTCCAAGATG-AA--TG-TA-CCC-TATT-C--ATATTC-AA--ACGAC--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGTGGC-GGAAGAAGAT-GGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCATTTCCGTGCTTCATTA--ATCAC-TCTCCAGG-CCTTAGAT-AAA-C-TACATA-AA-----------------CT----TACG---CAAGTT---------TTT-------CGT-GTGTTCA---ACT-----TCAA---------T-CTCCATTT--TCGGTTTG-AGTCA--GCTTTC-AGCAACCG-T-AAGGCCTGC-GATGTCTCT-ACATCAAT-CTTTGATCG--TT-GAAA-TA-TTA---TGAAAAAAGGCTTGACAGTCTTGC-AT-C-TGCCAAATTTA-GATTTTTAAAAGATAGAAACT-TCGATTTGT-G-CT-C-C--AT--T--TG-CAT--TA-T--TTAATT-CGTGTGCGACTACTCATTAACCTATCCCG---C-TT--A-AAT-GCAGTTC---GATAACT---C-GC-CAAA-TACTGAA-AAT-GTG---CTAT-ACACAA-TAATCACACTCAGCTATC----CTG-TTCTG-ACT-TCTC-T--C---A-TTAT-TACCCCCATATTA--TTA-TCTATCAG---AAA-A-T-TCA-ATACAACTAGTAAGTAT--TACTTTATtg
gi|7 : taTTC-AAGAACGAT--A---CATC------------------------AAAGA--T------ACAGTGGAATGTGGGGGC-TGA----GATGGGG-TGT-ATTCCATGGAACTTG-AA-TCCTGCCTTTGA-CGTTCCCATGC-TCATTGATATCAC-TTTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-AAG-T-AA-GGTTCTGTCGCTCGCTCCAACTTGACGCAAAGTTTTT----TCGTTGT--TCATGGACTATGTGTCAAGCTGAAGTCTGCTCC-CCTGAC--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGGCTTCAGATGTATCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTA--AAAAAGCTTGACAGTCTTGCTAT-C-TGCC-AATTCA-ATTTTATAAAGGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATTATTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-ACG-AT-CAACAAATAAGGAT--T-TTTTATGTAa
gi|8 : CCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------AC--TG-AAT
gi|8 : ----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTATT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCC-ACATCATC-TTTTGATCG--TTGannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttgtgttcaacttcaatctccacctcgtattagtccgcttcagcaaccgtaatgccttcagatgtctccacatcatcttttgatcgttg
gi|9 : ccagattcaaacgatatcaacaaaaaatactgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATATCAC--A-TCTCCA-----AATT-GG-CTTACTT-------TATA-AGAA-GC-TTA-AAT-TTTCCT-G--TCTT-TGG---A-AAG--AAAAA--AGTCCACA-AATCTTTTGC-AAA-GAT-GGCAC--T-GAGG--TTG--ATGGTCCCAGCCATGAGA-CATCCAC-T--GATG---A--TG--TG--AGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTTGCAGT-A-GTGAAACA--TTTTG-GAA-ATA-TTCCAATAT-CAA--TG-TAT-CC-TATT-CCCAGATCC-AA--ACG
blockSeqs : A A A T TT . GTA AC . ATC . GCTTATTAATAATT T C T A C G T T AG C CTGA GA GT C G C A GT C CG C AG C G T . GATA T TT . T C . . A A C T A G . G TT A . A . G A G A GA TC T GAAAACAAAAACCAAAAAAAAAAA T CACCAA G G G G . A T A A A T GAT A C A CC A . T AGCT AT G AGT . TGG ATGTG GCTGAAGTC G GA CG . CG G A C . . . T . . AT AA . . A TT . C A . G AA T GT . . C . TAA C G CGACTACTCAT C T C TAA C CAAA A TATT . . . A C AG TT G A C TC A T A TT . . CTA . T A A A A . A
blockSeqs : A A A . . . . T . GT . GGCTAATT . . . . . . . . . . A . . . . . A . . . . . C G . . A . TT . . . . . . . . . G . . . TT . . . . . . . . . . A . . . . G G G . A . . . . . A . C . CT . . G AAGT AG . GT . . . . . . . . . T . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . AC . A A TA . . . . . . T . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . T . AT . GCTTACTT . . . . . . . . . . A . . . . . A . . . . . C G . . A . T . . . . . . . . . G . . . TT . . . . . . . . . . T . . . . G G G . A . . . . . . . C . C . . G AGGT AG . G . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . A . A A T . . . . . . T . . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . T . AT . TAATT . . . . . . . . . . A . . . . . A . . . . . A . . . A . . . . . . . . . . . G . . . TT . . . . . . . . . . T . . . . G T G . A . . . . . . . C . C . . T AAGT AT . G . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . A . A A T . . . . . . T . . . . . . . . . . . . . . . . A . .
blockSeqs : . . T . CT . GCTT . . . . . . . . . . A . . . . . A . . . . . C . . . A . . . . . . . . . . . A . . . T . . . . . . . . . . T . . . . G G . . . . . . . . . . C . C . . G AT G . T . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . A . G . C . . . . . . T . . . . . . . . . . . . . . . . . . .
blockSeqs : . CA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . A . A . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : T** ** NT** GCTTAATT******** ** A**** ** A***** T* ** ** T** ************************ G** **** ** ** ** A*** A*** T**** *** T** ** ** *** **
originalCons : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTC-AT-TGTGATT-GG-CTTA-TT-------TA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTT-TGG---A-AGA--AAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCAC-T--GATG---A--TG-ATGTTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTCGCAGT-A-GT-AACCATTTTTTG-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--A-T-CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-A-G-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAA-GTTTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
finalCons : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAAT--CTATGATATCAC--AATCTCNT--TGTGATT-GGCTTAATT--------TA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTT-TGGA----AGA--AAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCAC-T--GATGA-----TG-ATGT-AGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTCGCAGT-A-GT-AACCATTTTTTG-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--AT--CAAC------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGAC-A-G-T-AAAGGTTCTGTC-CACGCTCCAACTTGACGCAAG--TTTT----TCGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TTA---AAT-GCAGTTCA---ATAACAT----ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTCT--GCT--TTCTGCATT-TTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTATTTCGAAATAATATAGAAAAACAAAAGATTGTTA
Alignments
lowQualScore : 1 1 1 11 111 11 22222222 11 1111111 1 11 222 222 11 444444444444444444444444 111111 111 222 11111 111 11111 222222222 1 11 11 22222222222 1111 11111 111 11 111 111
lowQualScore : 0 0 0 8 0 11 6 111 666 77 1 33 5 0 66666666 1 5 5 5 5 5 5 5 5 33 5 7777777 0 77 1 5 5 5 77 5 77 5 77 4 6 55 000 6 555 5 5 5 5 66 5 5 5 5 2 5 5 5 0 66 5 5 5 0 66 5 5 5 4 55 00 4 4 222222222222222222222222 4 222222 4 2 2 2 5 3 5 5 5 5 5 333 5 0 2 5 666 5 5 4 999 22 0 5 0 99 44444 5 000 44444 222222222 5 0 66 66 5 66 5 5 5 5 4 4 00 5 5 66 11 4 4 4 55 4 4 4 4 4 55 4 66 5 5 5 66 888 5 5 33333333333 5 5 5 9999 5 0000 5 22222 5 5 000 6 5 77 999 33 0 0 5 5 77 5 5 5 00 77 77 5 000 000 6 6 6 6 7 99 6
lowQualScore : . . . . . .. . ... ... .. . .. . . ........ . . . . . . . . . .. . ....... . .. . . . . .. . .. . .. . . .. ... . ... . . . . .. . . . . . . . . . .. . . . . .. . . . . .. .. . . ........................ . ...... . . . . . . . . . . . ... . . . . ... . . . ... .. . . . .. ..... . ... ..... ......... . . .. .. . .. . . . . . . .. . . .. .. . . . .. . . . . . .. . .. . . . .. ... . . ........... . . . .... . .... . ..... . . ... . . .. ... .. . . . . .. . . . .. .. .. . ... ... . . . . . .. .
lowQualScore : 6 6 6 0 8 00 7 777 888 99 0 11 7 7 11111111 4 7 7 7 7 7 7 7 7 66 7 4444444 4 99 4 7 7 0 99 7 99 7 99 3 7 88 888 7 444 7 7 7 7 99 0 0 0 0 2 0 0 0 1 44 0 0 0 2 99 0 0 0 0 55 66 4 4 888888888888888888888888 4 888888 4 5 5 5 0 1 0 0 0 0 0 888 0 2 5 0 222 0 0 3 333 11 7 7 7 22 33333 7 000 33333 999999999 0 1 99 99 0 99 0 0 0 0 4 4 66 0 0 99 99 4 4 4 88 0 0 0 0 0 55 4 11 0 0 0 99 888 0 0 88888888888 0 0 0 0000 0 1111 0 33333 7 7 000 7 7 99 444 66 7 1 7 7 99 7 7 7 44 99 99 7 000 000 7 7 7 7 5 22 7
consensus : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTCAT-TGTGATT-GGCTTA------ATTTA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTT-TG---GA--AGAAAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCACT--GATG---ATG-ATG-T-AGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTCGCAGT-A-GT-AACCATTTTTTG-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--AT-CAA-C------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGACA-G-TAAAGGTTCTGTC-CACGCTCCAACTTGACGCAAG--TTTT-----TC-GTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
Reference ( family-158 ) : CAATAAAACAACTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTCNT-TGTGATT-GGCTTA------ATTTA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTT-TG---GA--AGAAAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCACT--GATG---ATG-ATG-T-AGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTCGCAGT-A-GT-AACCATTTTTTG-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--AT-CAA-C------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGAAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGACA-G-TAAAGGTTCTGTC-CACGCTCCAACTTGACGCAAG--TTTT-----TC-GTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-CAACAAATAAGGAT--T-TTTTATGTA
gi|1 : AATAAAATAACTAATGT-CACTGG-TT--AG-AGATGTA---TAAA-TTCTATG-TATCACCCAATCTCATCTGTGATTTGGCTTA-------TTTA-A-A--A-G--TTA-AAT-TT-CCT-GG-TCTT-TG---AAG-AAAAAAAA--AGTCCACA-AAATCTTTGC-AAA-GATTGGCAC--T-GAGG--TTGG-ATAGTCCC--CAATGAGAGCATCCACTTGGATGAC-ATG-ATGTT-AGTCACTGGTGGGCTT-G-GTCCACGAACGAATAA-TTG-GCAT-A-TTTCACAGT-ACGT-AACCATTTTTTG-GAAGATA-TTCCCATATGCAAATTG-TATCCC-TA-T-GCCAGATTC-AA--ACGATA-ATACAACC------------------------AAAAAA-T------ACAGTG-AATGCGGCGGCGTGAAGAGATTGGCA-TGC-ATTCCATCGAACTTG-A---TCTGCCTTTGAGCGTTGCCGTGC-TCATT---ATCAC-TCT-CAGGCCCTTAGAT-AAA-C-T-CATACAAGACG-GTTAAAGGTTCTGTC-CACGATCCAACTTGACGCAAG--TTTTTTTCGTT-GTTGTGTTCA---ACT-----TCAA---------T-CT-CACCC--C--GTTTTCAGTCC--GCTTTC-AGCAACCG-TAAATGCCTTCAGATGTCTCTCACATTATCTTTTTGATCGTTTTGGAAAGTATTTA--TTGA-AAAAGGCTTGACAGTCTTGCTATGCATGCC-AATTTA-TTTTTTTAAAAGTTAG-AACTATCGATTTTG-G-CTCC-C--ATG-T--TGTTATGTTA-TTGT---TC-C-TGTA-----------GAA-CGATCCCGAC-T-TT----AAT-GCAGTTC----ATA--------GGGCAAATTACCGAATAATGTTGTGCCTTT-ACATAATTAAT-AAACTT--CTGTC-TGGCTCATTCTGCA-T-TTTT-T--CC-TG-TTCT-TGTTCC---A--AATTTATT---TCAGGAAAAATA-T-TCG--T-C-ACCAATAAGGATTAT-TTTTATG
gi|10 : attattaataaA--AATAA-TTG-GCAT-A-TTTCACAGT-A-GT-AACCGTTTTT-G-GAA-ACA-TTCCAATATGTAA--CG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--AT-CAA-C-------------------------AAAAA-T------ACAGTG-AAT-------------GAAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCATGC-TCATT---ATCAC-TCTTCAGGCCCTTAGAT-AAA-C-T-CATA-AATACA-GCTAAATGTTCTGTC-CATGCTCCAACTTGACGC
gi|11 : -CTCCACCT--C--GTTTT-AGTCC--GC-TTA-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACACCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-CA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTCCAAAATAACA---T-ACGCAAA-TACCGAATAAT-TTG---C
gi|12 : GCAGATG-G---TAAAAC-CTATGATATCAC--AATCTCGT-TGTGATT-GGCTT--------T----A-AGAA-GC-TTA-AAT-TT-TCT-G--TCTT-TAGCTGA--AAATAAAAGTAGTC-ACA-AATCTTTTCC-AAAAGAGTGGCAC--T-GAGG--TTGA-ATGGTCCC--CC
gi|13 : AGATGTCTCT-ACATTATC-TTTTGATCG--TTGAAAA-TA-TTA--TTG--AAAAGGTTTGACAGACTTGCTAT-C-TGCC-AATTTA-ATTTCTTAAAAGATAGAAACT-TCGATTTTG-G-CT-C-C--
gi|14 : AAT-AAACTT--CTGTC-T-GCT--TTCTGAATT-TTTTCC--CC-TG-TTCT-TTTTCCTTTA--A--TTT-T---TCAG---AAA
gi|15 : TCTTGCTAT-C-TGCC-AATTTA-ATTATTTAAAAGATAGAAACT-TAGATTTTG-G-CT-C-C--ATG-T--T
gi|2 : ATAAAACAATTA-TGT-AAGTGGCTT--AGCAGATG-G---TAAA-T-CTATTATATCAC--AAT-TCATCTGTGATT-GGGCTA------ATTTA-A-AGA--GCATTACAGTGTT-CCT-GAGTCTT-TG---------AAGAAA--ATTC-ACAGAATCTTTTGCCAAAAGATTGGCACGTT-GAGGCGTTGGCATGATCCC--C-ATGAGAGCATCCACT--GATGGATATGTATG---AGTC-CTGGTGGGCTT-GCGTC---GAA--AATAAATTGAGCAT-A-TTTCGCACTGA-GT-A-CCATTTTTTGAGAA-ATAATTCCAATATGCAA--TGGTATCCCATTTT-CCCAGATTC-AA--ACAACTCAA-CAA-CGAAAACAAAAACCAAAAAAAAAAAAAAAAA-CCACCAAACAATG-AATGTGGGG-C-TGGAGAAGA--GAG-TGT--TTCCATCGAACTTG-AAATCCTGCCTTTGGGCGTTTCTGT-C-T-ATT---ATCACAACTCAAGGCCCTTAGAT-AAACC-T-TATA-A
gi|2 : T-CCGATTTTG-GACT-CGC--ATG-TGTTG-CATG-TACT--T---TT-T-TGAT-----------TAA-CGATCCCGACTT-TT--ACAATCGCAGTtagctacggttagatacgttggtgctcctcgcttctctcaaagtcctactgacgcaccgcatcgttcttttgcgttgctgccttatcgccgcgttgcaatcttctttccacgttttcgttcatacggatctctacgacactatttgttcatagtcgtctaaaagcagaactactacattcgtatcatcatcttgattgtgttgtccgattattcgaaaatgtggtccagttgcgttgctatccttggcgataatctatagccaagatactctctctctctctctcctcgtcagcgctttccgattttggactcgcatgtgttgcatgtacttttttgattaacgatcccgacttttacaatcgcagtc
gi|3 : ataaaacaattatgtaagtggcttagcagatggtaaatctattatatcacaattcatctgtgattgggctaatttaaagagcattacagtgttcctgagtctttgaagaaaattcacagaatcttttgccaaaagattggcacgttgaggcgttggcatgatccccatgagagcatccactgatggatatgtatgagtcctggtgggcttgcgtcgaaaataaattgagcatatttcgcactgagtaccattttttgagaaataattccaatatgcaatggtatcccattttcccagattcaaacaactcaacaacgaaaacaaaaaccaaaaaaaaaaaaaaaaaccaccaaacaatgaatgtggggctggagaagagagtgtttccatcgaacttgaaatcctgcctttgggcgtttctgtctattatcacaactcaaggcccttagataaaccttataatagctacggttagatacgttggtgctcctcgcttctctcaaagtcctactgacgcaccgcatcgttcttttgcgttgctgccttatcgccgcgttgcaatcttctttccacgttttcgttcatacggatctctacgacactatttgttcatagtcgtctaaaagcagaactactacattcgtatcatcatcttgattgtgttgtccgattattcgaaaatgtggtccagttgcgttgctatccttggcgataatctatagccaagatactctctctctctctctcctcgtcagcgcttCAATAAA-CAATTAATGT-AACTGGCTT--AGCAGATG-G---TAAA-T-CTATGATATCAC--AATCTCAT-TGTGATT-GGCTTATTAATAATTTA-A-AGAA-GC-TTA-AAT-TT-CCT-G--TCTTCTG---GA--AGAAAAAA--AATC-ACA-AATCTTTTGC-AAAAGACTGGCAC--T-GAGG--TTGG-ATGGTCCC--CCATGAGAGCATCCTCT--GATG---ATG-ATG-TTAGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTTGCAGT-A-GT-AAACATTTT--G-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAT--AT-CAA-C------------------------AAAAAA-T------ACAGTG-AATGTGGGGGC-TGAAGTAGATGGGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCATGC-TCATT---ATCAC-TTTCCAGGCCCTTAGAT-AAA---T-CATA-AAGACAAG-TAAAGGTTCTGTC-CACGCTCCAACTTGACGCAAG--TTTT-----TTTGTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTG--AAAAAGCTTGACAGTCTTGCTAT-C-TGCC-AATTTA-ATTTTTTAAAGGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AAT-ACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-TTCCC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG----AATATT-TCG-AT-CAAC-AATAAGGAT--T-TTTTATGTAc
gi|4 : CAATAAAACA-CTA-TGTTAACTGGCTTTTAGCAGGAG-G---TAAA-T-CTATGATATCAC--AATCTCAT-AGTGATT-A---------------A-A-AGAA-GC-TTA-AAT-TT-TCTTG--TCTT-TG---GA--AGAAAAAA--AGTC-ACA-AATCTTTTGC-AAAAGATTGGCAC--T-GAGT--TTGG-ATGGTCCC--CCATGAGA-CATCCACTT-GATG---ATT-ATG-TTAGTC-CTGGTGGGCTT-T-GTCCA-GAA--AATAA-TT--GCAT-ATTTTCGCAGT-A-GT-AACCATTTTTTG-GAA-ATA-TTCCAATATGCAA--TG-TATCCC-TATT-CCCAGATTC-AA--ACGAC--AT-CAA-C------------------------AAAAAA-T------GCAGTG-AATGTTGGGGC-TGAAGAAGATGGGGTTGT-ATTTCATCGAACTTG-AA-TCCTGCCTTTGAGCGTTTCCGTGC-TCATT---ATCAC-TCTCCAGGCCCTTAGATAAAA-C-T-CAT--AAGACAGG-TAAAGGTTCTGTC-CACGCTCCAACTTGACGCAAG--TTTT-----TC-GTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--ATTTT-AGT-C--GCGTTC-AGCAACCG-T-AATGCCTTCAGATGTCTCT-ACATCAT--TTTTGATCA--TTGGAAA-TA-TTA--TTG--AAAAGGCTTGACAGTCTTGCTAT-C-TGCC-AATTAA-TTTTTTTAAAAGATAGAAACT-TCGATTTT--G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TC-T-GGTA-----------TAA-CGATCCCGAC-T-TTTAA-AAT-GCAGTTC---AATAACATATT-ACGCAAA-TACCGAATAA--TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATT-TTTT-T--CC-TGTTTCT-TTTTCCTCTA--A--TTA-T---TCAG---AAATA-T-TCG-AT-GAACAAATAAGGAT--T-TTTTATGTA
gi|5 : ttaaCAATAAA-CA-CTAATGT-A-CTGGCGT--AGCAGATA-GGTATAAA-T--TATGATATCAC--AATCTCCT-TGTGC-----CGTA------ATTTA-ACAGAATGC-TTA-AAT-TT-CCT-G--TC-T-TG---GAAGAGAAAAAA--AGTC-AC---ATCTTTTGC-AAAAGACTTGCAC--TCGAAG--TTGG-ATATTCCC--CATTGAGAGCATCCACT--GATG---ATG-ATG-T-AGTC-CTGGTGGG-TT-G-GTCCA-GAA--AAT-A-TTG-GCATCA-TTTCACAGT-A-TT-AAACCGTTTTTG-GAA-ACA-TTCCAATATGTAA--CG-T-TCCC-TATTGCCCAGATTCAAA--ACG-T--AT-TAT-C------------------------ACAAAATT------ACAGTG-AAT-------------GAAGATGGGG-TGTAATTCCATCG-ACTTGAAA-TCCT--CCTTGAG-GGTTCCATGC--CATT---ATCAC-TCTTCAGG-CCTTA-AT-AAA-CTT-CATA-AATACA---TAAATGTTC--TT-CATGCTCCAACTTGACGCAAG--TTTT-----TC-GTTGTGTTCA---ACT-----TCAA---------T-CTC--CCT--C--GTTTA-CGTTCCGGC-TTCAAGCAACCGCT-ACTGCC-TCAGATGTCTCT-ACATATTT-TTTTGATCAT-TTGGAAA-TA-TTGATTTG--AAAAAGCTTGA-AGTCTTGCTAT-C-TGC---ACTTATTTTTTTTATAAGAT-GAAA-T-TCGATTTTGCG-CT-C-CAAATGTT--TG-TATG-TA-T--T---TTCC-TGTA-----------TAA-CGATCCCGAC-TCTT--A-AAT-GCAGTTC---AAT-ATA---TAACGC--A-T-CTGAAT-AT-TTG---CTCTAACAT-ATAAAT-AAACTT---TGTCTT-GCT--TTCTGCATT-TTTT-T--TCATG-TTCTATTTTGCTTTA--A--TTA-T---T-AG---AAATA-TATCGAAT-CAACAAA-AAAGAT--T-TTTTg
gi|6 : a-AGTC-CTGGCG--CTTTG-GTCCA-GAA--AATAA-TTG--CAT-A-TTTC-CAGT-A-GT-AACCATTTT----GAA-ATA-TTCCAAGATG-AA--TG-TA-CCC-TATT-C--ATATTC-AA--ACGAC--AT-CAA-C------------------------AAAAAA-T------ACAGTG-AATGTGGTGGC-GGAAGAAGAT-GGG-TGT-ATTCCATCGAACTTG-AA-TCCTGCCTTTGAGCATTTCCGTGCTTCATTA--ATCAC-TCTCCAGG-CCTTAGAT-AAA-C-TACATA-AA---------------CT----TACG---CAAGTT----------TTT-------C-G-TGTGTTCA---ACT-----TCAA---------T-CTCCATTT--TCGGTTTG-AGTCA--GCTTTC-AGCAACCG-T-AAGGCCTGC-GATGTCTCT-ACATCAAT-CTTTGATCG--TT-GAAA-TA-TTA---TGAAAAAAGGCTTGACAGTCTTGC-AT-C-TGCCAAATTTA-GATTTTTAAAAGATAGAAACT-TCGATTTGT-G-CT-C-C--AT--T--TG-CAT--TA-T--TTAATT-CGTGTGCGACTACTCATTAACCTATCCCG---C-TT--A-AAT-GCAGTTC---GATAACT---C-GC-CAAA-TACTGAA-AAT-GTG---CTAT-ACACAA-TAATCACACTCAGCTATC----CTG-TTCTG-ACT-TCTC-T--C---A-TTAT-TACCCCCATATTA--TTA-TCTATCAG---AAA-A-T-TCA-ATACAACTAGTAAGTAT--TACTTTATtg
gi|7 : taTTC-AAGAACGAT--A--CAT-C------------------------AAAGA--T------ACAGTGGAATGTGGGGGC-TGA----GATGGGG-TGT-ATTCCATGGAACTTG-AA-TCCTGCCTTTGA-CGTTCCCATGC-TCATTGATATCAC-TTTCCAGGCCCTTAGAT-AAA-C-T-CATA-AAGACAAG-TAA-GGTTCTGTCGCTCGCTCCAACTTGACGCAAAGTTTTT-----TC-GTTGT--TCATGGACTATGTGTCAAGCTGAAGTCTGCTCC-CCTGAC--GTTTT-AGTCC--GC-TTC-AGCAACCG-T-AATGGCTTCAGATGTATCT-ACATCATC-TTTTGATCG--TTGGAAA-TA-TTA--TTA--AAAAAGCTTGACAGTCTTGCTAT-C-TGCC-AATTCA-ATTTTATAAAGGATAGAAACT-TCGATTTTG-G-CT-C-C--ATG-T--TG-CATG-TA-T--T---TT-C-TGTA-----------TAA-CGATCCCGAC-T-TT--A-AAT-GCAGTTC---AATAACA---T-ACGCAAA-TACCGAATAAT-TTG---CTCT-ACATAATTAAT-AAACTT--CTGTC-T-GCT--TTCTGCATTATTTT-T--CC-TG-TTCT-TTTTCCTTTA--A--TTA-T---TCAG---AAATA-T-ACG-AT-CAACAAATAAGGAT--T-TTTTATGTAa
gi|8 : CCAGATTC-AA--ACGAT--AT-CAA-C------------------------AAAAAA-T------AC--TG-AAT
gi|8 : -----TC-GTTGTGTTCA---ACT-----TCAA---------T-CTCCACCT--C--GTATT-AGTCC--GC-TTC-AGCAACCG-T-AATGCCTTCAGATGTCTCC-ACATCATC-TTTTGATCG--TTGannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttgtgttcaacttcaatctccacctcgtattagtccgcttcagcaaccgtaatgccttcagatgtctccacatcatcttttgatcgttg
gi|9 : ccagattcaaacgatatcaacaaaaaatactgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATATCAC--A-TCTCCA----AATT-GGCTTA------CTTTATA-AGAA-GC-TTA-AAT-TTTCCT-G--TCTT-TG---GA--AAGAAAAA--AGTCCACA-AATCTTTTGC-AAA-GAT-GGCAC--T-GAGG--TTG--ATGGTCCCAGCCATGAGA-CATCCACT--GATG---ATG--TG---AGTC-CTGGTGGGCTT-G-GTCCA-GAA--AATAA-TTG-GCAT-A-TTTTGCAGT-A-GTGAAACA--TTTTG-GAA-ATA-TTCCAATAT-CAA--TG-TAT-CC-TATT-CCCAGATCC-AA--ACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTATTTCGAAATAATATAGAAAAACAAAAGATTGTTA