lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 22222 111 1 4444444 2222 1111 111111111 4444444 6666666666666666666666666666666666666666666666666666 1111111111 33333 333333333 22222222 111 11 333333333333333333 111111 1111 11 1 222222222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 222222222222 22222222222 11 1111111 1111 111 1 1111111
lowQualScore : 5 33 5 00000 111 5 5 0 5 5 5 5 4444444 44 0 555 66 0 2222 5 55 5 0000 66 4 555555555 3 3 3 3 55 3 0000000 55 3 666 88 5 55 9999999999999999999999999999999999999999999999999999 7 8888888888 4 4 777 88888 4 777 66 99999 4 4 4 000000000 4 88888888 66 777 11 5 888888888888888888 999999 5555 6 6 33 0 666666666 6 99 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 555555555555 5 0 4 11111111111 11 999 1111111 3 4 3 3 1 7 3 7777 3 666 7 3 3 99 4 5 5555 5 7777 0 66 888 6 0 1 5 5 66 5 5 66 6666666 66 5
lowQualScore : . .. . ..... ... . . . . . . . ....... .. . ... .. . .... . .. . .... .. . ......... . . . . .. . ....... .. . ... .. . .. .................................................... . .......... . . ... ..... . ... .. ..... . . . ......... . ........ .. ... .. . .................. ...... .... . . .. . ......... . .. ........................................................................................ . ............ . . . ........... .. ... ....... . . . . . . . .... . ... . . . .. . . .... . .... . .. ... . . . . . .. . . .. ....... .. .
lowQualScore : 7 66 7 99999 222 0 0 0 0 0 0 0 4444444 55 1 444 99 5 5555 0 44 0 6666 44 4 111111111 6 6 6 6 00 6 2222222 00 6 444 66 2 55 8888888888888888888888888888888888888888888888888888 2 9999999999 4 4 888 33333 4 888 11 00000 4 4 4 999999999 0 55555555 11 888 99 0 444444444444444444 222222 2222 7 7 33 8 777777777 7 22 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 666666666666 0 1 4 11111111111 11 555 8888888 6 0 6 6 3 3 6 7777 6 444 2 6 6 55 4 0 6666 0 0000 4 99 888 0 0 4 0 0 99 0 0 99 2222222 99 0
consensus : AGGCCAC-A--CCAA-ATTAAA----AA-C-TT-G-GT-C-GC-CGGA-CC-CGC---CGCGCACTTAGTTT-A--CTGCTTTTCC-GAAT-AAT-AATA-T----TAAAAAAAA-TAT--C-C-CG-CAT-CCTGAAAC-AAA-T-TG--C-C----CGTTT--TC-CGCAC---A--TTTTCGA--CTCT--------------TAT-T-T--------------TT-----T-TT--TN--TTTTTTTTTT--TG-----TGT-G-T---GTG----TGTTG-TC---CTT--ACGTCCT--ACTCT-T-AC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTG--CCCAAGATTG--A-TTAT-T--ATA-CACATG----TAA------AAGA---A-GTGCA-GAAG-ATANACTA---------TT-AT--ATAT------------------------CATTATAT-----A--------------------T---ACGT----------AT----------GTATAT------------GT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------ACT-TTT-TG-CAA-TAAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T----ATT-T--G-AACTTTTT--AATTTTA--AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
Reference ( gi|6 ) : AGGCCAC-A--CCAA-ATTAAG----AA-C-TT-G-GT-C-GC-CGGA-CC-CGC---CGC-CACTTAGTTT-A--CTGCTTTTT--GAAT-AAT-AATA-T----TAAAAGAAA-TAT--C-C-CA-CAT-CCTGAAAC-AAA-T-TG--C-C----C--TT--TC-CGCAC---A--TTTTCAA--CTCT--------------CAC-T-T--------------TT-----T-TT--TC--TTTCTTTTTT--TG-----TGT-G-T---GT-----TGTTG-TC---CTT--ACGTCCT--ATTCT-T-AC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTG--ACCAAGATTG--A-TTAT-T-TATA-CACAT-----TAA------AAGA---A-GTGCA-GAAG-ATAGACTA---------TT-AT--ATAT------------------------CATTTTAT-----A--------------------T---ATAT----------AT----------GTACAT------------GT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------ACT-TTT-TG-CAA-TAAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T----ATT-T--G-AACTTTTT--AATTTT---AAAATTATCATAGCGCTTGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|5 : AGGCCAC-A--CCAT-ATTAAA----AA-C-TT-G-GT-T-GC-TGGA-CC-CGC----GCGCACTTAGTTT-A--CTGCTTTTC--GAAT-AAT-AGTA-T----TAAAAAAAA-TAT--------------------------T-TG--C-C----CGTTT--TC-CGCAC---A--TTTTCAA--CTCT--------------TAT-T-T--------------TTGGCTTTATT--TA--TTTATTTTTTGGTG-----TAT-G-T---GTG----TGTTG-TC---CTT--ACGTCCT--ACTCT-T-AC-AGAACC---------AAGGGGGGGGGG-G--------T--TCTG--CCCAAGATTG--A-TTAT-T--ATA-TACATG----TAA------AAGATTTA-GTGCA-GAAG-ATAGACAA---------TT-AT--ATAT------------------------CATTATAT-----AGCAGATGTATTTCAGGAGGAT---ACATTTTAGT----AT----------ATGCAT------------GT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------ACT-TTTTTG-CAA-TAAAA-TGT-T----ATCGCTC-ACC---TCTATTCAT-TTTAC-ATCGACT--GA-AACTTTTCA-TATTAATT-T--G-AACTTTTT--AACTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-ATTTAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTTGTGTGGC
gi|3 : tAGGCCAC-A--CCAA-ATTAAA----AA-C-TC-G-GT-C-GC-CGAA-CC-CGC----GCGCACTTAGTTTTA--CTGCTTTTC--GAATGAAA-AATA-T----TAAAAAATA-TAT--C-T-CG-CAT-CCTGAAAC-AAA-T-TG--C-C----CG-TT--TC-CGCAC---A--TTTTCGA--CTCTGTTTTTTGGTTTTACAT-TGT--------------TT-----T-TTAATT--TTTTTTTTTT--CG-----TGT-G-TTGTGTG----TGTTG-TC---CTT--ACGTCCT--ACTCT-TTAC-AGAACCTTGGGGGGGGGGGGGGGGGGG-A--------T--TCTG--CCCAAGATTG--A-TTAT-T--ATA-TACATG----TAA------AAGA---ATGTGCA-GAC--ATACACTG---------TT-AT--ATA-------------------------------AT--------------------------T---ATAT----------A-----------GCAAAT------------GT-AAT-TTCAGGGAAGGATACATTTTAGT------ATA-TGTACCTCAACT-TTT-TG-CAA-TAAAAATGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-AACGACT--GTAAACTTTTCA-T----ATT-TTGG-AACTTTTT--AATTTTA--AAAATTATCATAGCGCTCGCGCCGCACCAACTTTTATTCCTTCT-A--AAATACC-GAAGACAC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|4 : tAGGCCAC-AG-CCAA-ATTAAA----AAACATT-G-GT-C-AC-CGGAACC-CGC---GGCGCACTTAGTTT-A--CTGCTTTTTC-GAAT--AT-AATA-T----TAAA--AAA-TAT--CAC-CG-CATCCCTGAAAC-AAATT-TG--CAC----G--TT--TT-CGCAC---AT-TTTTCGAACCTCT--------------TAT-T-TGTGGA---------TTGG---T-TT--TT--TTTTTTTTTT--TG-----AAT-G-T---GT-----GGTTGTTC---CTT--ACGTCTA--ACTCT-T-AC-AGAACCTGGG-----GGGGGGGGGGGG-G--------T--TCTG--CTCAAGATTG--A-TTATAC-TATG-CATG------TAA------AAGA---A-GTGCA-TAA--ATATACTA---------TT-AT--ATAT------------------------CATTATATAGCAGA--------------------T---GTATTTTCAGGAGGATACATTTTATAATATAT------------GT-A-C-TTCA-----------ACTTTGGG-GCAAAAAATTG-------ACT-TTT-TG---A-T--AA-TGT-T----ATCGCTCGGCC---TCTATT-AT-TTTACAATCGACT--GT-AAC-TTTCA-T----ATT-T--GAAACTTTTT--AATTTTAAAAAAATTATCATAGCGCTCG--CCGCACCAAACTTC-TTCCTTCT-A--AAAT-CC-GAAA--GC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|1 : tAGGCCACGA--CCAA-ATTAAACCAAAA-CATT-G-GTGC-GCACGG--CC-CAG---CGCTCACTT-GTTT-ATACTGCTTTTTCAAAAT-AAT-AACA-TATTTTAAAAAAAA-AAT--C-CACGGCAT-CCTGCAAC-AAA-TCTG--C-C----CGTTT--TT-CGCAC---A--TTT-CGA--C-CT--------------TAT-T-T--------------TT-----T-TC--TTAATTTTTTTTTT--TG------GT-GCT---GT------GTTG-TC---C-T--ACGTCCT--CTACTCT-AC-TTAACC---------GGAGGGGGGAGG-G--------T--c
gi|7 : GGCCA--A--CCAA-ATTAAA----A----TT-GAGT-CTGT-CGGA-CCACGC----GC-CG--TAATTT-A--CAGCTTTTC--AGAT-AA--ATTA-T----TACACAAAT-TAT--C-C--G-CAT-CCAGAAAC-AAC-T-TGTCC-C----T--TT--TC-CGCAC---A---TTTCGA--CTCT--------------TAC-T-T--------------TTAG---T-TT--TA--TTTCAATTT----------TAA-G-T---GT-----TGCT-------------CG------A-------AC-AGAACC----------TGGGGAAAAAA-T--------T--TGTG--CCCAGAAGTGC-A-GAA-----ACAGCACCT-----TAATTATATAAG----A-GTGCAGGAAG-ATATACTA---------TT-ATAAATAT------------------------TATgggggacgggaggggggggggcgggggcggggggtgatttctgcccaagattgtaattattataatacatgggaataaagatagtgcagaaggatagactatttatatatcattatatagcagatgtatttcaggaggatacatttagtagttactgtaccttctctggtcaaaaaaagatctctgcaataaaactgtgtatcgctcgccagctctattaatttacatcgactttgtaacttttcattatctgaactttttttaattttaaatttcatcacgctcgcccgcaccacctttttccttctaaaatccagaggaccaagaaatttaaatggtgtgtg
gi|2 : GCCAC-A--CCAA-ATTAAA----AA-A-CT-G-GTTC-GC-CAGA-TC-CGCAGGCGC-C--TTAGT---A--CTGCTTT----GAAT-AATTAATA-T------AAAAAAA-T-T--A-C-CG-CAT-CCTGAAAC-AAA-T-TG--C-CG---C--TTTGTC-CGCACTAAA--TTTTGAG--CTCT--------------TTA-T-T--------------TT-----G-GT--TG--TTTTTTTTTT--TG-----GGTGG-T---GTG----TGTTG-TT---CTTAAACGTCTA--ACTCT-T-ACAAGAACT---------GGAGGGGGTAGG-G--------a
gi|8 : GCCAC-AAACCAATAATAA-----AA-C-TTAG-GT-C-GC-CG-A-CC-CGC-------------------------TTTTTCAAAAT-AAT-AATACT----TAAAAGAAA-TATATC-C-CG-CAT-CCTGAAACAAAA-T-TG--C-CTCGTT--TT--TCACGCAC---ATCTTTCCGA--CTTT--------------TATAT-TGGTTTAATTTATTATT-----T-TT--TC--TTTTTTCTTT--TG------GT-G-T---GTGGTG-TGTTG-TTTCACTT--ACGTCCCTAACTCT-T-AC-AGAACCCT-------GGGGGGGGGGGG-GGGGGGGAAT--CCTG--G-CAAGATTG--ATTTAT-T-agggggggatacagaacctggaaggggggaggcggagggggggggatcttctaccaccaagagtgattattacagtacagtgaaaaaagtgcagaagataactattggtaatatcatatatagtcgagatgtattcaggaggatacattttatttaattatgtatatgtgaccgttcaacttggggcaaaaaaatgactttttgccaataaatgttatctcgcggccctattttattcacatcgatctaactttccactatctgaactatctaattttaaaaattatcatagcgctcgcttcgcaccaacatttttcttctaaaaatccgacgaccacgaaattaaattgctg
gi|14 : aAA----AA-C-TT-G-GT-C-GC-CGGA-CC-CGCG--CG--CACGTACTTA-A--CAGTTTTCC----AT-AAT-AATA-T----TAAAACAAATTAT--C-C-AC-CAT-ATGGAAAT-AAA-A-TG--T-C----CGTTT--TC-CGCAC---A--TTTTa
gi|12 : -TAT--C-C-CG-CAT-TCTGAAAC-AAA-T-TG--C-C----CATTT--CC-CGCAC---A--TTTTTTA--CTCT--------------TA-------------------TT-----T-TT--GG--GTTGTTTTTT--TGGGGGGTGC-G-T---ATATGTGTGTTG-TC---CTT--ACGTCCT--ACACT-T-AC-AGAACCT--------GGGGGGGGGAGG-GGGTA----T--TCTG--CCCAAGATTG--A-TTAT-TATATA-CAtggttttacttcca
gi|17 : T--C-C-CG-CAT-CCTGCAAC-AAA-T-TG--C-C----CGTTT--CC-CGCAC---A--TTTTCTA--CTCT--------------TAT-T-T--------------TT-----
gi|15 : -CG-CAT-CCTGAAAC-AAA-T-TG--T-C----CGTTT--TC-CACAC---A--TTTTCGA--CTTT---------------AT-T-T--------------AT-----T-TT--T----TAAATTTTTGGTG-----TGT-G-T---GTG----TGTTG-TC---CTT--GCGTCCT--ACTCT-T-AC-AGAACC---------TGGGGGGGggtg
gi|1 : C---------GGGGGCGGGGGGTGAT------T--TCTG--CCCAAGATTGTAA-TTAT-T--ATAATACATGGGAATAA------AGAT---A-GTGCA-GAAGGATAGACTA---------TTTAT--ATAT------------------------CATTATAT-----A--------------------GCAGATGT----------ATTTCAGGAGG-ATACATTTAGTAGTTACTGT-ACC-TTC--------------TCTGGT--CAAAAAA-AG-------A-T-CTC-TG-CAA-TAAAACTGTGT----ATCGCTC-GCCAGCTCTATTAAT-TT-AC-ATCGACTTTGT-AACTTTTCA-TT---ATC-T--G-AACTTTTTTTAATTTT---AAA-TT-TCATCACGCTCGC-CCGCACCA-CCTTT-TTCCTTCT-A--AAAT-CCAGAGG--AC-------C--AAGAAA-TTTAAATGGTGTG
gi|2 : aggccacgaccaaattaaaccaaaacattggtgcgcacggcccagcgctcacttgtttatactgctttttcaaaataataacatattttaaaaaaaaaatccacggcatcctgcaacaaatctgcccgtttttcgcacatttcgaccttatttttttcttaatttttttttttggtgctgtgttgtcctacgtcctctactctacttaaccggaggggggagggtgggggacgggaggggggggggC---------GGAGGGGGGGGG-A--------TCTTCTACCACCAAGAGTG--A-TTAT-T--ACAGTACAG-----TGA------AAAA---A-GTGCA-GAAG-ATA-ACTATTGGTAATATC-AT--ATATAGTCGAGATGTATTCAGGAGGATACATTTTAT-----T--------------------T---AATT----------AT----------GTATAT------------GTGACCGTTCA-----------ACTT-GGG-GCAAAAAAATG-------ACT-TTT-TGCCAA-T-AAA-TGT-T----ATCTCGC-GGC---CCTATTTTA-TTCAC-ATCGA-T--CT-AACTTTCCACT----ATC-T--G-AACTATCT--AATTTTA--AAAATTATCATAGCGCTCGCTTCGCACCAACATTT-TT-CTTCTAA--AAAT-CC-GACG--AC-------C--ACGAAA-TTAAATTGCTGtg
gi|9 : gccacaccaaattaaaaaactggttcgccagatccgcaggcgccttagtactgctttgaataattaatataaaaaaattaccgcatcctgaaacaaattgccgctttgtccgcactaaattttgagctctttattttggttgtttttttttttgggtggtgtgtgttgttcttaaacgtctaactcttacaagaactggagggggtagggagggggggatacagaacctggaaggggggaggAT------------------------CATTATAT-----A--------------------GCAGATGT----------ATTTTA------GTATAG------------GT-ACC-TTCA-----------ACTTTGGG-GCAAAA-A-TG-------ACT-TTT-TG-CAA-TAAAA-TGT-T----ATTGCTC-GTC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T----ATT-T--G-AACTTTTT--AATTTC---AGAATTATCATAGCACTCGC-CCGCCCCAATTTTT-TTCCTTCT-A--AAAT-CC-GAAG--ACATTAATTCCGAAGAAA-TTAAATTGGTGTGGC
gi|19 : -----A--------------------T---ACAT----------TTTA--------GTATAT------------GT-ATC-TTCA-----------ATTTTGGA--CAAAA-A-TG-------ACT-TT
gi|13 : aggT----------GTATAT------------GT-ACC-TTAA-----------ACTCTTTG-GTAAAAA--TG-------ACCCTTT-TG-CAA-TAAAA-TGT-A----ATCGCTC-ATC---TCTATTTATATTTAC-ATTG-CTG-GT-TACTTTTCatt
gi|10 : ttctatacatgtagcgcttgtatttcaggaggatgcattttCC-TTCA-----------ACTTTGGGCGCAAAAA--TG-------ACT-TTT-TG-CAAATAAAA-TGT-TCTTTATCGCTC-GCC---TCTATT-----TTAC-ATTGACT--GT-A-CTTTTCA-T----ATTCT--C-AACT----------------AAGCTATGA-ATCGCTCGC-CTGCCCTAA-TTTT-TTCCTTCT-A--AAAT-CC-CAAG--AT-------C--AAGAAAATTAAATTGGTGTGGC
gi|18 : atatagcagctgttttcaggaggatAAAAAA-TG-------ACT-CTT-TG-CAA-TAAAA-TGT-T----GTCGCTC-G-----TCCGTTTAT-TTTAC-ATCGACc
gi|11 : AAAAA-TG-------ACT-TTT-TG-CAA-TAAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTGT-ATCGACT--GT-AACTTTTCA-T----ATT-T--A-AACTTTTT--AATTTT---AAAATTGTCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CT-GAAG--AC-------C--AAGAAA-TTAAATTGGTTTGGC
gi|20 : -CAA-TGAAA-TGT-T----ATCGCTC-GCC---CCTGTTTAT-TTTAC-ATCGACT--c
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ACATCATATAACACTGATTCTACCCTGACATATATGATTGATAAATACTTTCATCAAAGAATTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11 11111111111111 333333333333333333333 11111 222222222 22222222 11 3333333333333333 1111 222222222 444444444444444444444444 5555555555555555555555555555555555555555555555555555555555555555555555555555 11111 11111111111 1111111 222 1111111
lowQualScore : 5 11 66 9999 4 8 4 4 8 4 4 4 99 4 1 4 4 66 33 4 4 4 4 9999 4 5555 3 3 3 3 3 3 6 44 555 44 3 44 99999999999999 3 3 555555555555555555555 4 4 55 1 00000 66666 99999 4 4 4 777 55 666666 4 4 888888888 3 55555555 55 66 7777 4 55 1111111111111111 1111 5 5 66 111111111 5 888888888888888888888888 0000000000000000000000000000000000000000000000000000000000000000000000000000 66 55555 4 4 99999999999 55 6 6 0000000 3 3 3 3 33 3 7777 3 3 555 3 3 3 88 4 8 9999 4 66 4 66 777 8 0 4 4 66 4 4 66 4444444 66 4
lowQualScore : . .. .. .... . . . . . . . . .. . . . . .. .. . . . . .... . .... . . . . . . . .. ... .. . .. .............. . . ..................... . . .. . ..... ..... ..... . . . ... .. ...... . . ......... . ........ .. .. .... . .. ................ .... . . .. ......... . ........................ ............................................................................ .. ..... . . ........... .. . . ....... . . . . .. . .... . . ... . . . .. . . .... . .. . .. ... . . . . .. . . .. ....... .. .
lowQualScore : 0 99 99 4444 4 9 4 4 9 4 4 4 66 4 1 6 4 11 11 4 4 4 4 4444 0 5555 3 3 3 3 3 3 7 66 888 66 3 66 66666666666666 3 3 000000000000000000000 0 0 55 0 00000 66666 33333 0 0 0 000 55 888888 0 0 333333333 6 99999999 55 11 0000 4 11 4444444444444444 7777 7 7 44 777777777 7 111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333 11 66666 4 0 00000000000 66 5 7 8888888 3 6 3 3 88 3 1111 3 3 888 7 3 3 66 0 9 4444 4 11 4 11 000 9 1 4 4 11 4 4 11 4444444 11 4
consensus : AGGCCAC-A--CCAA--ATTAAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-CGCACTTAG-TTTA--CTGCTTTTCCGAA-T-AAT-AATA-T----TAAAAAAAAT-AT--C-C-CG-CATCC-TGAAAC-AAAT-T-GCC-CGTTTTC--CGCAC---A--TTTT-CGA--CTCT--------------TAT-T-T--------------TT-----T-T-T--TNTTTTTTT-----TTT--T-GTG---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-TTA-TTATA-TACA----------TG----TAAAAGA---A-GTGCA-GAAG-ATAN--------ACTATT-ATATAT------------------------CATTATAT---------------------A--------------------T---AC------GTAT------------------GTA--TA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTT-TG-C-AAT-AAAA-TG----T-TATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T----ATT-T--G-AAC--TTTTTAATTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAG-AAATTAAATTGGTGTGGC
Reference ( family-155 ) : AGGCCAC-A--CCAA--ATTAAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-CGCACTTAG-TTTA--CTGCTTTTCCGAA-T-AAT-AATA-T----TAAAAAAAAT-AT--C-C-CG-CATCC-TGAAAC-AAAT-T-GCC-CGTTTTC--CGCAC---A--TTTT-CGA--CTCT--------------TAT-T-T--------------TT-----T-T-T--TNTTTTTTT-----TTT--T-GTG---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-TTA-TTATA-CACA----------TG----TAAAAGA---A-GTGCA-GAAG-ATAN--------ACTATT-ATATAT------------------------CATTATAT---------------------A--------------------T---AC------GTAT------------------GTA--TA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTT-TG-C-AAT-AAAA-TG----T-TATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T----ATT-T--G-AAC--TTTTTAATTTT--AAAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAG-AAATTAAATTGGTGTGGC
gi|1 : AGGCCACGA--CCAA--ATTAAACCAAAA-CATT-G-GTGC-GCACGG--CCCAGCG-CTCACTT-G-TTTATACTGCTTTTTCAAAAT-AAT-AACA-TATTTTAAAAAAAAA-AT--C-CACGGCATCC-TGCAAC-AAATCT-GCC-CGTTTTT--CGCAC---A--TTT--CGA--C-CT--------------TAT-T-T--------------TT-----T-TCT--TAATTTTTT-----TTT--T--TG-----GT-GCTGTGTTG-TC---C-T--ACGTCCTCT--ACTC--TAC-TTAACC---------GGAGGGGGGAGG-G--------T--
gi|1 : C---------GGGGGCGGGGGGTGAT------T--TCTGCC--CAAGATTGTAA-TTA-TTATAATACA----------TGGGAATAAAGAT---A-GTGCA-GAAGGATAG--------ACTATTTATATAT------------------------CATTATAT---------------------A--------------------GCAGAT------GTATTTCAGGAGGATACATTTAGTAGTTAC----TGT-ACC-TTC--------------TCTGGT--CAAAAAA-AG-------A--TCTC-TG-C-AAT-AAAACTG----TGTATCGCTC-GCCAGCTCTATTAAT-TT-AC-ATCGACTTTGT-AACTTTTCATT----ATC-T--G-AACTTTTTTTAATTTT----AAATT-TCATCACGCTCGC-CCGCACC-ACCTTT-TTCCTTCT-A--AAAT-CCAGAGG--AC-------C--AAG-AAATTTAAATGGTGTGgggggacgggaggggggggggcgggggcggggggtgatttctgcccaagattgtaattattataatacatgggaataaagatagtgcagaaggatagactatttatatatcattatatagcagatgtatttcaggaggatacatttagtagttactgtaccttctctggtcaaaaaaagatctctgcaataaaactgtgtatcgctcgccagctctattaatttacatcgactttgtaacttttcattatctgaactttttttaattttaaatttcatcacgctcgcccgcaccacctttttccttctaaaatccagaggaccaagaaatttaaatggtgtgtg
gi|10 : aggccacgaccaaattaaaccaaaacattggtgcgcacggcccagcgctcacttgtttatactgctttttcaaaataataacatattttaaaaaaaaaatccacggcatcctgcaacaaatctgcccgtttttcgcacatttcgaccttatttttttcttaatttttttttttggtgctgtgttgtcctacgtcctctactctacttaaccggaggggggagggtgggggacgggaggggggggggCC-TTCA-----------ACTTTGGGCGC-AAAAA-TG-------A-CTTTT-TG-CAAAT-AAAA-TGTTCTT-TATCGCTC-GCC---TCT----AT-TTTAC-ATTGACT--GT--ACTTTTCA-T----ATTCT--C-AAC--T--------------AAGCTATGA-ATCGCTCGC-CTGCCCTAA-TTTT-TTCCTTCT-A--AAAT-CC-CAAG--AT-------C--AAGAAAATTAAATTGGTGTGGCtg
gi|11 : atatagcagctgttttcaggaggatAAAAA-TG-------A-CTTTT-TG-C-AAT-AAAA-TG----T-TATCGCTC-GCC---TCTATTCAT-TTTGT-ATCGACT--GT-AACTTTTCA-T----ATT-T--A-AAC--TTTTTAATTTT---AAAATTGTCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CT-GAAG--AC-------C--AAG-AAATTAAATTGGTTTGGCc
gi|12 : T-AT--C-C-CG-CATTC-TGAAAC-AAAT-T-GCC-CATTTCC--CGCAC---A--TTTT-TTA--CTCT--------------TAT-T-T--------------TTG----G-G-T--TGTTTTTTTGGGGGGTG--C-GTA---T-AT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACAC-TTAC-AGAACCT--------GGGGGGGGGAGG-GGGTA----T--TCTGCC--CAAGATTG--A-TTA-TTATA-TACA----------c
gi|13 : T------------------GTA--TA-----TGT-ACC-TTAA-----------ACTCTTTG-GT-AAAAA-TG-------ACCCTTT-TG-C-AAT-AAAA-TG----T-AATCGCTC-ATC---TCTATTTATATTTAC-ATTG-CTG-GT-TACTTTTC
gi|14 : ttctatacatgtagcgcttgtatttcaggaggatgcattttAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGC-G-CGCACGTAC-TTAA--CAG-TTTTCC--A-T-AAT-AATA-T----TAAAACAAATTAT--C-C-AC-CATAT-GGAAAT-AAAA-T-GTC-CGTTTTC--CGCAC---A--TTTT-TGG---TTT--------------TAC-T-T--------------
gi|15 : -CG-CATCC-TGAAAC-AAAT-T-GTC-CGTTTTC--CACAC---A--TTTT-CGA--CT-T--------------TAT-T-T--------------AT-----T-T-T--TTAAATTTT-----TGG--T-GTG---T-GT-G-TGTGTTG-TC---CTT--GCGTC--CT--ACTC-TTAC-AGAACC---------TGGGGGGGcca
gi|17 : T--C-C-CG-CATCC-TGCAAC-AAAT-T-GCC-CGTTTCC--CGCAC---A--TTTT-CTA--CTCT--------------TAT-T-T--------------TT-----
gi|18 : AAAAAA-TG-------A-CTCTT-TG-C-AAT-AAAA-TG----T-TGTCGCTC-G-----TCCGTTTAT-TTTAC-ATCGACggtg
gi|19 : ---------------------A--------------------T---AC------ATTTTA----------------GTA--TA-----TGT-ATC-TTCA-----------ATTTT-GG-AC-AAAAA-TG-------A-CTTT
gi|2 : aggGCCAC-A--CCAA--ATTAAA----AA-A-CT-G-GTTC-GC-CAGA-TCCGCAGGCGC-CTTAG-T--A--CTGCTTT---GAA-T-AATTAATA-T------AAAAAAAT--T--A-C-CG-CATCC-TGAAAC-AAAT-T-GCCGCTTTGTC--CGCACTAAA--TTTT-GAG--CTCT--------------TTA-T-T--------------TT-----G-G-T--TGTTTTTTT-----TTT--T-GGG---TGGT-G-TGTGTTG-TT---CTTAAACGTC--TA--ACTC-TTACAAGAACT---------GGAGGGGGTAGG-G--------att
gi|2 : C---------GGAGGGGGGGGG-A--------TCTTCTACCACCAAGAGTG--A-TTA-TTACAGTACA-----------G----TGAAAAA---A-GTGCA-GAAG-ATAACTATTGGTAATATC-ATATATAGTCGAGATGTATTCAGGAGGATACATTTTAT---------------------T--------------------T---AA------TTAT------------------GTA--TA-----TGTGACCGTTCA-----------ACTT-GGG-GCAAAAAAATG-------A-CTTTT-TGCC-AAT--AAA-TG----T-TATCTCGC-GGC---CCTATTTTA-TTCAC-ATCGA-T--CT-AACTTTCCACT----ATC-T--G-AAC--TATCTAATTTT--AAAAATTATCATAGCGCTCGCTTCGCACCAACATTT-TT-CTTCTAA--AAAT-CC-GACG--AC-------C--ACG-AAATTAAATTGCTGagggggggatacagaacctggaaggggggaggcggagggggggggatcttctaccaccaagagtgattattacagtacagtgaaaaaagtgcagaagataactattggtaatatcatatatagtcgagatgtattcaggaggatacattttatttaattatgtatatgtgaccgttcaacttggggcaaaaaaatgactttttgccaataaatgttatctcgcggccctattttattcacatcgatctaactttccactatctgaactatctaattttaaaaattatcatagcgctcgcttcgcaccaacatttttcttctaaaaatccgacgaccacgaaattaaattgctg
gi|20 : gccacaccaaattaaaaaactggttcgccagatccgcaggcgccttagtactgctttgaataattaatataaaaaaattaccgcatcctgaaacaaattgccgctttgtccgcactaaattttgagctctttattttggttgtttttttttttgggtggtgtgtgttgttcttaaacgtctaactcttacaagaactggagggggtagggagggggggatacagaacctggaaggggggagg-C-AAT-GAAA-TG----T-TATCGCTC-GCC---CCTGTTTAT-TTTAC-ATCGACT--
gi|3 : AGGCCAC-A--CCAA--ATTAAA----AA-C-TC-G-GT-C-GC-CGAA-CCCG-CG-CGCACTTAGTTTTA--CTGCTTTT-CGAA-TGAAA-AATA-T----TAAAAAATAT-AT--C-T-CG-CATCC-TGAAAC-AAAT-T-GCC-CG-TTTC--CGCAC---A--TTTT-CGA--CTCTGTTTTTTGGTTTTACAT-TGT--------------TT-----T-T-TAATTTTTTTTT-----TTT--C-GTGTGTT-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTCTTTAC-AGAACCTTGGGGGGGGGGGGGGGGGGG-A--------T--TCTGCC--CAAGATTG--A-TTA-TTATA-TACA----------TG----TAAAAGA---ATGTGCA-G-AC-ATAC--------ACTGTT-ATATA--------------------------ATTATAT---------------------A------------------------------------------------------GCA--AA-----TGT-AAT-TTCAGGGAAGGATACATTTTAGT------ATA-TGTACCTCAA-CTTTT-TG-C-AATAAAAA-TG----T-TATCGCTC-GCC---TCTATTCAT-TTTAC-AACGACT--GTAAACTTTTCA-T----ATT-TTGG-AAC--TTTTTAATTTT--AAAAATTATCATAGCGCTCGCGCCGCACCAACTTTTATTCCTTCT-A--AAATACC-GAAGACAC-------C--AAG-AAATTAAATTGGTGTGGC
gi|4 : tAGGCCAC-AG-CCAA--ATTAAA----AAACATT-G-GT-C-AC-CGGAACCCGCGG-CGCACTTAG-TTTA--CTGCTTTTTCGAA-T-A-T-AATA-T----TAAAAAA--T-AT--CAC-CG-CATCCCTGAAAC-AAAT-TTGCA-CGTTTTC---GCAC---A--TTTTTCGAACCTCT--------------TAT-T-TGTGGA---------TTGG---T-T-T--TTTTTTTTT-----TTT--T-GAA---T-GT-G-TG-GTTGTTC---CTT--ACGTC--TA--ACTC-TTAC-AGAACCTGGG-----GGGGGGGGGGGG-G--------T--TCTGCT--CAAGATTG--A-TTA-TACTA-TGCA----------TG----TAAAAGA---A-GTGCA-TAA--ATAT--------ACTATT-ATATAT------------------------CATTATATAGCAGATGTATTTTCAGGAGGA--------------------T---AC------AT-T------------------TTA--TAATATATGT-A-C-TTCA-----------ACTTTGGG-GCAAAAAATTG-------A-CTTTT-TG----AT---AA-TG----T-TATCGCTCGGCC---TCTATT-AT-TTTACAATCGACT--GT-AAC-TTTCA-T----ATT-T--GAAAC--TTTTTAATTTTAAAAAAATTATCATAGCGCTCG--CCGCACCAAACTTC-TTCCTTCT-A--AAAT-CC-GAAA--GC-------C--AAG-AAATTAAATTGGTGTGGC
gi|5 : tAGGCCAC-A--CCAT--ATTAAA----AA-C-TT-G-GT-T-GC-TGGA-CCCGC-G-CGCACTTAG-TTTA--CTGCTTTTC-GAA-T-AAT-AGTA-T----TAAAAAAAAT-AT-------------------------T-T-GCC-CGTTTTC--CGCAC---A--TTTT-CAA--CTCT--------------TAT-T-T--------------TTGGCTTTAT-T--TATTTATTT-----TTTGGT-GTA---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------AAGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-TTA-TTATA-TACA----------TG----TAAAAGATTTA-GTGCA-GAAG-ATAG--------ACAATT-ATATAT------------------------CATTATAT---------------------AGCAGATGTATTTCAGGAGGAT---ACATTTTAGTAT------------------ATG--CA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTTTG-C-AAT-AAAA-TG----T-TATCGCTC-ACC---TCTATTCAT-TTTAC-ATCGACT--GA-AACTTTTCA-TATTAATT-T--G-AAC--TTTTTAACTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-ATTTAAT-CC-GAAG--AC-------C--AAG-AAATTAAATTTGTGTGGCc
gi|6 : tAGGCCAC-A--CCAA--ATTAAG----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-C-CACTTAG-TTTA--CTGCTTTTT-GAA-T-AAT-AATA-T----TAAAAGAAAT-AT--C-C-CA-CATCC-TGAAAC-AAAT-T-GCC-C--TTTC--CGCAC---A--TTTT-CAA--CTCT--------------CAC-T-T--------------TT-----T-T-T--TCTTTCTTT-----TTT--T-GTG---T-GT-G-T-TGTTG-TC---CTT--ACGTC--CT--ATTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGAC--CAAGATTG--A-TTATTTATA-CACA----------T-----TAAAAGA---A-GTGCA-GAAG-ATAG--------ACTATT-ATATAT------------------------CATTTTAT---------------------A--------------------T---AT------ATAT------------------GTA--CA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTT-TG-C-AAT-AAAA-TG----T-TATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T----ATT-T--G-AAC--TTTTTAATTTT---AAAATTATCATAGCGCTTGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAG-AAATTAAATTGGTGTGGC
gi|7 : GGCCA--A--CCAA--ATTAAA----A----TT-GAGT-CTGT-CGGA-CCA--CG-CGC-CGTAA-TTTA--CAGCTTTTCAGA--T-AA--ATTA-T----TACACAAATT-AT--C-C--G-CATCC-AGAAAC-AACT-T-GTC-CCTTTTC--CGCAC---A---TTT-CGA--CTCT--------------TAC-T-T--------------TTAG---T-T-T--TATTTCAAT-----TT--------------T-A-AGTGTTG-----------------------CTC-GAAC-AGAACC----------TGGGGAAAAAA-T--------T--TGTGCC--CAGAAGTG---------CAGA-AACAGCACCTTAATTA----TATAAG----A-GTGCAGGAAG-ATAT--------ACTATT-ATAAAT-------------------------ATTATA
gi|8 : GCCAC-AAACCAATAAT--AA----AA-C-TTAG-GT-C-GC-CG-A-CCCGCT----------------------TTTTCAAAA-T-AAT-AATACT----TAAAAGAAAT-ATATC-C-CG-CATCC-TGAAACAAAAT-T-GCCTCGTTTTTCACGCAC---ATCTTTC-CGA--CTTT--------------TATAT-TGGTTTAATTTATTATT-----T-T-T--TCTTTTTTC-----TTT--TGGTG---T-GTGG-TGTGTTG-TTTCACTT--ACGTC--CCTAACTC-TTAC-AGAACCCT-------GGGGGGGGGGGG-GGGGGGGAAT--CCTG-G--CAAGATTG--ATTTA-TTA
gi|9 : aAT------------------------CATTATAT---------------------A--------------------GCAGAT------GTATTTTA--------------GTA--TA-----GGT-ACC-TTCA-----------ACTTTGGG-GCAAAA-A-TG-------A-CTTTT-TG-C-AAT-AAAA-TG----T-TATTGCTC-GTC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T----ATT-T--G-AAC--TTTTTAATTTC---AGAATTATCATAGCACTCGC-CCGCCCCAATTTTT-TTCCTTCT-A--AAAT-CC-GAAG--ACATTAATTCCGAAG-AAATTAAATTGGTGTGGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACATCATATAACACTGATTCTACCCTGACATATATGATTGATAAATACTTTCATCAAAGAATTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11 11111111111111 333333333333333333333 11111 222222222 22222222 22222222222222 1 111111 1111 222222222 444444444444444444444444 5555555555555555555555555555555555555555555555555555555555555555555555555555 11111 11111111111 1111111 1111 111 1111111
lowQualScore : 5 11 66 9999 4 8 4 4 8 4 4 4 99 4 1 4 4 66 33 4 4 4 4 9999 4 5555 3 3 3 3 3 3 6 44 555 44 3 44 99999999999999 3 3 555555555555555555555 4 4 55 1 00000 66666 99999 4 4 4 777 55 666666 4 4 888888888 3 55555555 55 66 77777777777777 4 4 0 444444 1111 5 5 66 111111111 5 888888888888888888888888 0000000000000000000000000000000000000000000000000000000000000000000000000000 66 55555 4 4 99999999999 55 2 6 0000000 3 3 3 3 33 3 3 7777 3 555 5 3 3 88 4 4 4 3333 66 4 66 666 8 0 4 4 66 4 4 66 4444444 66 4
lowQualScore : . .. .. .... . . . . . . . . .. . . . . .. .. . . . . .... . .... . . . . . . . .. ... .. . .. .............. . . ..................... . . .. . ..... ..... ..... . . . ... .. ...... . . ......... . ........ .. .. .............. . . . ...... .... . . .. ......... . ........................ ............................................................................ .. ..... . . ........... .. . . ....... . . . . .. . . .... . ... . . . .. . . . .... .. . .. ... . . . . .. . . .. ....... .. .
lowQualScore : 0 99 99 4444 4 9 4 4 9 4 4 4 66 4 1 6 4 11 11 4 4 4 4 4444 0 5555 3 3 3 3 3 3 7 66 888 66 3 66 66666666666666 3 3 000000000000000000000 0 0 55 0 00000 66666 33333 0 0 0 000 55 888888 0 0 333333333 6 99999999 55 11 11111111111111 4 4 0 333333 7777 7 7 44 777777777 7 111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333 11 66666 4 0 00000000000 66 1 7 8888888 3 6 3 3 88 3 3 1111 3 888 8 3 3 66 0 4 4 9999 11 4 11 777 9 1 4 4 11 4 4 11 4444444 11 4
consensus : AGGCCAC-A--CCAA--ATTAAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-CGCACTTAG-TTTA--CTGCTTTTCCGAA-T-AAT-AATA-T----TAAAAAAAAT-AT--C-C-CG-CATCC-TGAAAC-AAAT-T-GCC-CGTTTTC--CGCAC---A--TTTT-CGA--CTCT--------------TAT-T-T--------------TT-----T-T-T--TNTTTTTTT-----TTT--T-GTG---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGA---A-GTGCA-GAAG-ATAN--------ACTATT-ATATAT------------------------CATTATAT---------------------A--------------------T---AC------GTAT------------------GTA--TA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
Reference ( family-155 ) : AGGCCAC-A--CCAA--ATTAAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-CGCACTTAG-TTTA--CTGCTTTTCCGAA-T-AAT-AATA-T----TAAAAAAAAT-AT--C-C-CG-CATCC-TGAAAC-AAAT-T-GCC-CGTTTTC--CGCAC---A--TTTT-CGA--CTCT--------------TAT-T-T--------------TT-----T-T-T--TNTTTTTTT-----TTT--T-GTG---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGA---A-GTGCA-GAAG-ATAN--------ACTATT-ATATAT------------------------CATTATAT---------------------A--------------------T---AC------GTAT------------------GTA--TA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|1 : AGGCCACGA--CCAA--ATTAAACCAAAA-CATT-G-GTGC-GCACGG--CCCAGCG-CTCACTT-G-TTTATACTGCTTTTTCAAAAT-AAT-AACA-TATTTTAAAAAAAAA-AT--C-CACGGCATCC-TGCAAC-AAATCT-GCC-CGTTTTT--CGCAC---A--TTT--CGA--C-CT--------------TAT-T-T--------------TT-----T-TCT--TAATTTTTT-----TTT--T--TG-----GT-GCTGTGTTG-TC---C-T--ACGTCCTCT--ACTC--TAC-TTAACC---------GGAGGGGGGAGG-G--------T--
gi|1 : C---------GGGGGCGGGGGGTGAT------T--TCTGCC--CAAGATTGTAA-----------TT-A-TTATAATACATGGGAATAAAGAT---A-GTGCA-GAAGGATAG--------ACTATTTATATAT------------------------CATTATAT---------------------A--------------------GCAGAT------GTATTTCAGGAGGATACATTTAGTAGTTAC----TGT-ACC-TTC--------------TCTGGT--CAAAAAA-AG-------A--TCTCT-G-CAA-T-AAAACTGTGT----ATCGCTC-GCCAGCTCTATTAAT-TT-AC-ATCGACTTTGT-AACTTTTCA-TTATC----T--G-AACTTTTTTTAATTTT---AAA-TT-TCATCACGCTCGC-CCGCACC-ACCTTT-TTCCTTCT-A--AAAT-CCAGAGG--AC-------C--AAGAAA-TTTAAATGGTGTGgggggacgggaggggggggggcgggggcggggggtgatttctgcccaagattgtaattattataatacatgggaataaagatagtgcagaaggatagactatttatatatcattatatagcagatgtatttcaggaggatacatttagtagttactgtaccttctctggtcaaaaaaagatctctgcaataaaactgtgtatcgctcgccagctctattaatttacatcgactttgtaacttttcattatctgaactttttttaattttaaatttcatcacgctcgcccgcaccacctttttccttctaaaatccagaggaccaagaaatttaaatggtgtgtg
gi|10 : aggccacgaccaaattaaaccaaaacattggtgcgcacggcccagcgctcacttgtttatactgctttttcaaaataataacatattttaaaaaaaaaatccacggcatcctgcaacaaatctgcccgtttttcgcacatttcgaccttatttttttcttaatttttttttttggtgctgtgttgtcctacgtcctctactctacttaaccggaggggggagggtgggggacgggaggggggggggCC-TTCA-----------ACTTTGGGCGCAAAAA--TG-------A-CTTTTT-G-CAAAT-AAAA-TGT-TCTTTATCGCTC-GCC---TCTATT-----TTAC-ATTGACT--GT-A-CTTTTCA-T-ATTC---T--C-AACT----------------AAGCTATGA-ATCGCTCGC-CTGCCCTAA-TTTT-TTCCTTCT-A--AAAT-CC-CAAG--AT-------C--AAGAAAATTAAATTGGTGTGGCtg
gi|11 : atatagcagctgttttcaggaggatAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTGT-ATCGACT--GT-AACTTTTCA-T-ATT----T--A-AACTTTTT--AATTTT---AAAATTGTCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CT-GAAG--AC-------C--AAGAAA-TTAAATTGGTTTGGCc
gi|12 : T-AT--C-C-CG-CATTC-TGAAAC-AAAT-T-GCC-CATTTCC--CGCAC---A--TTTT-TTA--CTCT--------------TAT-T-T--------------TTG----G-G-T--TGTTTTTTTGGGGGGTG--C-GTA---T-AT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACAC-TTAC-AGAACCT--------GGGGGGGGGAGG-GGGTA----T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACAc
gi|13 : T------------------GTA--TA-----TGT-ACC-TTAA-----------ACTCTTTG-GT-AAAAA-TG-------ACCCTTTT-G-CAA-T-AAAA-TGT-A----ATCGCTC-ATC---TCTATTTATATTTAC-ATTG-CTG-GT-TACTTTTC
gi|14 : ttctatacatgtagcgcttgtatttcaggaggatgcattttAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGC-G-CGCACGTAC-TTAA--CAG-TTTTCC--A-T-AAT-AATA-T----TAAAACAAATTAT--C-C-AC-CATAT-GGAAAT-AAAA-T-GTC-CGTTTTC--CGCAC---A--TTTT-TGG---TTT--------------TAC-T-T--------------
gi|15 : -CG-CATCC-TGAAAC-AAAT-T-GTC-CGTTTTC--CACAC---A--TTTT-CGA--CT-T--------------TAT-T-T--------------AT-----T-T-T--TTAAATTTT-----TGG--T-GTG---T-GT-G-TGTGTTG-TC---CTT--GCGTC--CT--ACTC-TTAC-AGAACC---------TGGGGGGGcca
gi|17 : T--C-C-CG-CATCC-TGCAAC-AAAT-T-GCC-CGTTTCC--CGCAC---A--TTTT-CTA--CTCT--------------TAT-T-T--------------TT-----
gi|18 : AAAAAA-TG-------A-CTCTTT-G-CAA-T-AAAA-TGT-T----GTCGCTC-G-----TCCGTTTAT-TTTAC-ATCGACggtg
gi|19 : ---------------------A--------------------T---AC------ATTTTA----------------GTA--TA-----TGT-ATC-TTCA-----------ATTTT-GG-AC-AAAAA-TG-------A-CTTT
gi|2 : aggGCCAC-A--CCAA--ATTAAA----AA-A-CT-G-GTTC-GC-CAGA-TCCGCAGGCGC-CTTAG-T--A--CTGCTTT---GAA-T-AATTAATA-T------AAAAAAAT--T--A-C-CG-CATCC-TGAAAC-AAAT-T-GCCGCTTTGTC--CGCACTAAA--TTTT-GAG--CTCT--------------TTA-T-T--------------TT-----G-G-T--TGTTTTTTT-----TTT--T-GGG---TGGT-G-TGTGTTG-TT---CTTAAACGTC--TA--ACTC-TTACAAGAACT---------GGAGGGGGTAGG-G--------att
gi|2 : C---------GGAGGGGGGGGG-A--------TCTTCTACCACCAAGAGTG--A-----------TT-A-TTACAGTACA-G----TGAAAAA---A-GTGCA-GAAG-ATAACTATTGGTAATATC-ATATATAGTCGAGATGTATTCAGGAGGATACATTTTAT---------------------T--------------------T---AA------TTAT------------------GTA--TA-----TGTGACCGTTCA-----------ACTT-GGG-GCAAAAAAATG-------A-CTTTTT-GCCAA-T--AAA-TGT-T----ATCTCGC-GGC---CCTATTTTA-TTCAC-ATCGA-T--CT-AACTTTCCACT-ATC----T--G-AACTATCT--AATTTTA--AAAATTATCATAGCGCTCGCTTCGCACCAACATTT-TT-CTTCTAA--AAAT-CC-GACG--AC-------C--ACGAAA-TTAAATTGCTGagggggggatacagaacctggaaggggggaggcggagggggggggatcttctaccaccaagagtgattattacagtacagtgaaaaaagtgcagaagataactattggtaatatcatatatagtcgagatgtattcaggaggatacattttatttaattatgtatatgtgaccgttcaacttggggcaaaaaaatgactttttgccaataaatgttatctcgcggccctattttattcacatcgatctaactttccactatctgaactatctaattttaaaaattatcatagcgctcgcttcgcaccaacatttttcttctaaaaatccgacgaccacgaaattaaattgctg
gi|20 : gccacaccaaattaaaaaactggttcgccagatccgcaggcgccttagtactgctttgaataattaatataaaaaaattaccgcatcctgaaacaaattgccgctttgtccgcactaaattttgagctctttattttggttgtttttttttttgggtggtgtgtgttgttcttaaacgtctaactcttacaagaactggagggggtagggagggggggatacagaacctggaaggggggagg-CAA-T-GAAA-TGT-T----ATCGCTC-GCC---CCTGTTTAT-TTTAC-ATCGACT--
gi|3 : AGGCCAC-A--CCAA--ATTAAA----AA-C-TC-G-GT-C-GC-CGAA-CCCG-CG-CGCACTTAGTTTTA--CTGCTTTT-CGAA-TGAAA-AATA-T----TAAAAAATAT-AT--C-T-CG-CATCC-TGAAAC-AAAT-T-GCC-CG-TTTC--CGCAC---A--TTTT-CGA--CTCTGTTTTTTGGTTTTACAT-TGT--------------TT-----T-T-TAATTTTTTTTT-----TTT--C-GTGTGTT-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTCTTTAC-AGAACCTTGGGGGGGGGGGGGGGGGGG-A--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGA---ATGTGCA-G-AC-ATAC--------ACTGTT-ATATA--------------------------ATTATAT---------------------A------------------------------------------------------GCA--AA-----TGT-AAT-TTCAGGGAAGGATACATTTTAGT------ATA-TGTACCTCAA-CTTTTT-G-CAA-TAAAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-AACGACT--GTAAACTTTTCA-T-ATT----TTGG-AACTTTTT--AATTTTA--AAAATTATCATAGCGCTCGCGCCGCACCAACTTTTATTCCTTCT-A--AAATACC-GAAGACAC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|4 : tAGGCCAC-AG-CCAA--ATTAAA----AAACATT-G-GT-C-AC-CGGAACCCGCGG-CGCACTTAG-TTTA--CTGCTTTTTCGAA-T-A-T-AATA-T----TAAAAAA--T-AT--CAC-CG-CATCCCTGAAAC-AAAT-TTGCA-CGTTTTC---GCAC---A--TTTTTCGAACCTCT--------------TAT-T-TGTGGA---------TTGG---T-T-T--TTTTTTTTT-----TTT--T-GAA---T-GT-G-TG-GTTGTTC---CTT--ACGTC--TA--ACTC-TTAC-AGAACCTGGG-----GGGGGGGGGGGG-G--------T--TCTGCT--CAAGATTG--A-----------TT-A-TACTA-TGCATG----TAAAAGA---A-GTGCA-TAA--ATAT--------ACTATT-ATATAT------------------------CATTATATAGCAGATGTATTTTCAGGAGGA--------------------T---AC------AT-T------------------TTA--TAATATATGT-A-C-TTCA-----------ACTTTGGG-GCAAAAAATTG-------A-CTTTTT-G---A-T---AA-TGT-T----ATCGCTCGGCC---TCTATT-AT-TTTACAATCGACT--GT-AAC-TTTCA-T-ATT----T--GAAACTTTTT--AATTTTAAAAAAATTATCATAGCGCTCG--CCGCACCAAACTTC-TTCCTTCT-A--AAAT-CC-GAAA--GC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|5 : tAGGCCAC-A--CCAT--ATTAAA----AA-C-TT-G-GT-T-GC-TGGA-CCCGC-G-CGCACTTAG-TTTA--CTGCTTTTC-GAA-T-AAT-AGTA-T----TAAAAAAAAT-AT-------------------------T-T-GCC-CGTTTTC--CGCAC---A--TTTT-CAA--CTCT--------------TAT-T-T--------------TTGGCTTTAT-T--TATTTATTT-----TTTGGT-GTA---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------AAGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGATTTA-GTGCA-GAAG-ATAG--------ACAATT-ATATAT------------------------CATTATAT---------------------AGCAGATGTATTTCAGGAGGAT---ACATTTTAGTAT------------------ATG--CA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTTTG-CAA-T-AAAA-TGT-T----ATCGCTC-ACC---TCTATTCAT-TTTAC-ATCGACT--GA-AACTTTTCA-T-ATTAATTT--G-AACTTTTT--AACTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-ATTTAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTTGTGTGGCc
gi|6 : tAGGCCAC-A--CCAA--ATTAAG----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-C-CACTTAG-TTTA--CTGCTTTTT-GAA-T-AAT-AATA-T----TAAAAGAAAT-AT--C-C-CA-CATCC-TGAAAC-AAAT-T-GCC-C--TTTC--CGCAC---A--TTTT-CAA--CTCT--------------CAC-T-T--------------TT-----T-T-T--TCTTTCTTT-----TTT--T-GTG---T-GT-G-T-TGTTG-TC---CTT--ACGTC--CT--ATTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGAC--CAAGATTG--A-----------TT-ATTTATA-CACAT-----TAAAAGA---A-GTGCA-GAAG-ATAG--------ACTATT-ATATAT------------------------CATTTTAT---------------------A--------------------T---AT------ATAT------------------GTA--CA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTT---AAAATTATCATAGCGCTTGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|7 : GGCCA--A--CCAA--ATTAAA----A----TT-GAGT-CTGT-CGGA-CCA--CG-CGC-CGTAA-TTTA--CAGCTTTTCAGA--T-AA--ATTA-T----TACACAAATT-AT--C-C--G-CATCC-AGAAAC-AACT-T-GTC-CCTTTTC--CGCAC---A---TTT-CGA--CTCT--------------TAC-T-T--------------TTAG---T-T-T--TATTTCAAT-----TT--------------T-A-AGTGTTG-----------------------CTC-GAAC-AGAACC----------TGGGGAAAAAA-T--------T--TGTGCC--CAGAAGTGC-AGAAACAGCACCTTAA-TTATA-T------------AAG----A-GTGCAGGAAG-ATAT--------ACTATT-ATAAAT-------------------------ATTATA
gi|8 : GCCAC-AAACCAATAAT--AA----AA-C-TTAG-GT-C-GC-CG-A-CCCGCT----------------------TTTTCAAAA-T-AAT-AATACT----TAAAAGAAAT-ATATC-C-CG-CATCC-TGAAACAAAAT-T-GCCTCGTTTTTCACGCAC---ATCTTTC-CGA--CTTT--------------TATAT-TGGTTTAATTTATTATT-----T-T-T--TCTTTTTTC-----TTT--TGGTG---T-GTGG-TGTGTTG-TTTCACTT--ACGTC--CCTAACTC-TTAC-AGAACCCT-------GGGGGGGGGGGG-GGGGGGGAAT--CCTG-G--CAAGATTG--AT----------TT-A-TTA
gi|9 : aAT------------------------CATTATAT---------------------A--------------------GCAGAT------GTATTTTA--------------GTA--TA-----GGT-ACC-TTCA-----------ACTTTGGG-GCAAAA-A-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATTGCTC-GTC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTC---AGAATTATCATAGCACTCGC-CCGCCCCAATTTTT-TTCCTTCT-A--AAAT-CC-GAAG--ACATTAATTCCGAAGAAA-TTAAATTGGTGTGGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACATCATATAACACTGATTCTACCCTGACATATATGATTGATAAATACTTTCATCAAAGAATTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11 11111111111111 333333333333333333333 11111 222222222 22222222 22222222222222 1 111111 1111 222222222 444444444444444444444444 5555555555555555555555555555555555555555555555555555555555555555555555555555 11111 11111111111 1111111 1111 111 1111111
lowQualScore : 5 11 66 9999 4 8 4 4 8 4 4 4 99 4 1 4 4 66 33 4 4 4 4 9999 4 5555 3 3 3 3 3 3 6 44 555 44 3 44 99999999999999 3 3 555555555555555555555 4 4 55 1 00000 66666 99999 4 4 4 777 55 666666 4 4 888888888 3 55555555 55 66 77777777777777 4 4 0 444444 1111 5 5 66 111111111 5 888888888888888888888888 0000000000000000000000000000000000000000000000000000000000000000000000000000 66 55555 4 4 99999999999 55 2 6 0000000 3 3 3 3 33 3 3 7777 3 555 5 3 3 88 4 4 4 3333 66 4 66 666 8 0 4 4 66 4 4 66 4444444 66 4
lowQualScore : . .. .. .... . . . . . . . . .. . . . . .. .. . . . . .... . .... . . . . . . . .. ... .. . .. .............. . . ..................... . . .. . ..... ..... ..... . . . ... .. ...... . . ......... . ........ .. .. .............. . . . ...... .... . . .. ......... . ........................ ............................................................................ .. ..... . . ........... .. . . ....... . . . . .. . . .... . ... . . . .. . . . .... .. . .. ... . . . . .. . . .. ....... .. .
lowQualScore : 0 99 99 4444 4 9 4 4 9 4 4 4 66 4 1 6 4 11 11 4 4 4 4 4444 0 5555 3 3 3 3 3 3 7 66 888 66 3 66 66666666666666 3 3 000000000000000000000 0 0 55 0 00000 66666 33333 0 0 0 000 55 888888 0 0 333333333 6 99999999 55 11 11111111111111 4 4 0 333333 7777 7 7 44 777777777 7 111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333 11 66666 4 0 00000000000 66 1 7 8888888 3 6 3 3 88 3 3 1111 3 888 8 3 3 66 0 4 4 9999 11 4 11 777 9 1 4 4 11 4 4 11 4444444 11 4
consensus : AGGCCAC-A--CCAA--ATTAAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-CGCACTTAG-TTTA--CTGCTTTTCCGAA-T-AAT-AATA-T----TAAAAAAAAT-AT--C-C-CG-CATCC-TGAAAC-AAAT-T-GCC-CGTTTTC--CGCAC---A--TTTT-CGA--CTCT--------------TAT-T-T--------------TT-----T-T-T--TNTTTTTTT-----TTT--T-GTG---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGA---A-GTGCA-GAAG-ATAN--------ACTATT-ATATAT------------------------CATTATAT---------------------A--------------------T---AC------GTAT------------------GTA--TA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
Reference ( family-155 ) : AGGCCAC-A--CCAA--ATTAAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-CGCACTTAG-TTTA--CTGCTTTTCCGAA-T-AAT-AATA-T----TAAAAAAAAT-AT--C-C-CG-CATCC-TGAAAC-AAAT-T-GCC-CGTTTTC--CGCAC---A--TTTT-CGA--CTCT--------------TAT-T-T--------------TT-----T-T-T--TNTTTTTTT-----TTT--T-GTG---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGA---A-GTGCA-GAAG-ATAN--------ACTATT-ATATAT------------------------CATTATAT---------------------A--------------------T---AC------GTAT------------------GTA--TA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|1 : AGGCCACGA--CCAA--ATTAAACCAAAA-CATT-G-GTGC-GCACGG--CCCAGCG-CTCACTT-G-TTTATACTGCTTTTTCAAAAT-AAT-AACA-TATTTTAAAAAAAAA-AT--C-CACGGCATCC-TGCAAC-AAATCT-GCC-CGTTTTT--CGCAC---A--TTT--CGA--C-CT--------------TAT-T-T--------------TT-----T-TCT--TAATTTTTT-----TTT--T--TG-----GT-GCTGTGTTG-TC---C-T--ACGTCCTCT--ACTC--TAC-TTAACC---------GGAGGGGGGAGG-G--------T--
gi|1 : C---------GGGGGCGGGGGGTGAT------T--TCTGCC--CAAGATTGTAA-----------TT-A-TTATAATACATGGGAATAAAGAT---A-GTGCA-GAAGGATAG--------ACTATTTATATAT------------------------CATTATAT---------------------A--------------------GCAGAT------GTATTTCAGGAGGATACATTTAGTAGTTAC----TGT-ACC-TTC--------------TCTGGT--CAAAAAA-AG-------A--TCTCT-G-CAA-T-AAAACTGTGT----ATCGCTC-GCCAGCTCTATTAAT-TT-AC-ATCGACTTTGT-AACTTTTCA-TTATC----T--G-AACTTTTTTTAATTTT---AAA-TT-TCATCACGCTCGC-CCGCACC-ACCTTT-TTCCTTCT-A--AAAT-CCAGAGG--AC-------C--AAGAAA-TTTAAATGGTGTGgggggacgggaggggggggggcgggggcggggggtgatttctgcccaagattgtaattattataatacatgggaataaagatagtgcagaaggatagactatttatatatcattatatagcagatgtatttcaggaggatacatttagtagttactgtaccttctctggtcaaaaaaagatctctgcaataaaactgtgtatcgctcgccagctctattaatttacatcgactttgtaacttttcattatctgaactttttttaattttaaatttcatcacgctcgcccgcaccacctttttccttctaaaatccagaggaccaagaaatttaaatggtgtgtg
gi|10 : aggccacgaccaaattaaaccaaaacattggtgcgcacggcccagcgctcacttgtttatactgctttttcaaaataataacatattttaaaaaaaaaatccacggcatcctgcaacaaatctgcccgtttttcgcacatttcgaccttatttttttcttaatttttttttttggtgctgtgttgtcctacgtcctctactctacttaaccggaggggggagggtgggggacgggaggggggggggCC-TTCA-----------ACTTTGGGCGCAAAAA--TG-------A-CTTTTT-G-CAAAT-AAAA-TGT-TCTTTATCGCTC-GCC---TCTATT-----TTAC-ATTGACT--GT-A-CTTTTCA-T-ATTC---T--C-AACT----------------AAGCTATGA-ATCGCTCGC-CTGCCCTAA-TTTT-TTCCTTCT-A--AAAT-CC-CAAG--AT-------C--AAGAAAATTAAATTGGTGTGGCtg
gi|11 : atatagcagctgttttcaggaggatAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTGT-ATCGACT--GT-AACTTTTCA-T-ATT----T--A-AACTTTTT--AATTTT---AAAATTGTCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CT-GAAG--AC-------C--AAGAAA-TTAAATTGGTTTGGCc
gi|12 : T-AT--C-C-CG-CATTC-TGAAAC-AAAT-T-GCC-CATTTCC--CGCAC---A--TTTT-TTA--CTCT--------------TAT-T-T--------------TTG----G-G-T--TGTTTTTTTGGGGGGTG--C-GTA---T-AT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACAC-TTAC-AGAACCT--------GGGGGGGGGAGG-GGGTA----T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACAc
gi|13 : T------------------GTA--TA-----TGT-ACC-TTAA-----------ACTCTTTG-GT-AAAAA-TG-------ACCCTTTT-G-CAA-T-AAAA-TGT-A----ATCGCTC-ATC---TCTATTTATATTTAC-ATTG-CTG-GT-TACTTTTC
gi|14 : ttctatacatgtagcgcttgtatttcaggaggatgcattttAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGC-G-CGCACGTAC-TTAA--CAG-TTTTCC--A-T-AAT-AATA-T----TAAAACAAATTAT--C-C-AC-CATAT-GGAAAT-AAAA-T-GTC-CGTTTTC--CGCAC---A--TTTT-TGG---TTT--------------TAC-T-T--------------
gi|15 : -CG-CATCC-TGAAAC-AAAT-T-GTC-CGTTTTC--CACAC---A--TTTT-CGA--CT-T--------------TAT-T-T--------------AT-----T-T-T--TTAAATTTT-----TGG--T-GTG---T-GT-G-TGTGTTG-TC---CTT--GCGTC--CT--ACTC-TTAC-AGAACC---------TGGGGGGGcca
gi|17 : T--C-C-CG-CATCC-TGCAAC-AAAT-T-GCC-CGTTTCC--CGCAC---A--TTTT-CTA--CTCT--------------TAT-T-T--------------TT-----
gi|18 : AAAAAA-TG-------A-CTCTTT-G-CAA-T-AAAA-TGT-T----GTCGCTC-G-----TCCGTTTAT-TTTAC-ATCGACggtg
gi|19 : ---------------------A--------------------T---AC------ATTTTA----------------GTA--TA-----TGT-ATC-TTCA-----------ATTTT-GG-AC-AAAAA-TG-------A-CTTT
gi|2 : aggGCCAC-A--CCAA--ATTAAA----AA-A-CT-G-GTTC-GC-CAGA-TCCGCAGGCGC-CTTAG-T--A--CTGCTTT---GAA-T-AATTAATA-T------AAAAAAAT--T--A-C-CG-CATCC-TGAAAC-AAAT-T-GCCGCTTTGTC--CGCACTAAA--TTTT-GAG--CTCT--------------TTA-T-T--------------TT-----G-G-T--TGTTTTTTT-----TTT--T-GGG---TGGT-G-TGTGTTG-TT---CTTAAACGTC--TA--ACTC-TTACAAGAACT---------GGAGGGGGTAGG-G--------att
gi|2 : C---------GGAGGGGGGGGG-A--------TCTTCTACCACCAAGAGTG--A-----------TT-A-TTACAGTACA-G----TGAAAAA---A-GTGCA-GAAG-ATAACTATTGGTAATATC-ATATATAGTCGAGATGTATTCAGGAGGATACATTTTAT---------------------T--------------------T---AA------TTAT------------------GTA--TA-----TGTGACCGTTCA-----------ACTT-GGG-GCAAAAAAATG-------A-CTTTTT-GCCAA-T--AAA-TGT-T----ATCTCGC-GGC---CCTATTTTA-TTCAC-ATCGA-T--CT-AACTTTCCACT-ATC----T--G-AACTATCT--AATTTTA--AAAATTATCATAGCGCTCGCTTCGCACCAACATTT-TT-CTTCTAA--AAAT-CC-GACG--AC-------C--ACGAAA-TTAAATTGCTGagggggggatacagaacctggaaggggggaggcggagggggggggatcttctaccaccaagagtgattattacagtacagtgaaaaaagtgcagaagataactattggtaatatcatatatagtcgagatgtattcaggaggatacattttatttaattatgtatatgtgaccgttcaacttggggcaaaaaaatgactttttgccaataaatgttatctcgcggccctattttattcacatcgatctaactttccactatctgaactatctaattttaaaaattatcatagcgctcgcttcgcaccaacatttttcttctaaaaatccgacgaccacgaaattaaattgctg
gi|20 : gccacaccaaattaaaaaactggttcgccagatccgcaggcgccttagtactgctttgaataattaatataaaaaaattaccgcatcctgaaacaaattgccgctttgtccgcactaaattttgagctctttattttggttgtttttttttttgggtggtgtgtgttgttcttaaacgtctaactcttacaagaactggagggggtagggagggggggatacagaacctggaaggggggagg-CAA-T-GAAA-TGT-T----ATCGCTC-GCC---CCTGTTTAT-TTTAC-ATCGACT--
gi|3 : AGGCCAC-A--CCAA--ATTAAA----AA-C-TC-G-GT-C-GC-CGAA-CCCG-CG-CGCACTTAGTTTTA--CTGCTTTT-CGAA-TGAAA-AATA-T----TAAAAAATAT-AT--C-T-CG-CATCC-TGAAAC-AAAT-T-GCC-CG-TTTC--CGCAC---A--TTTT-CGA--CTCTGTTTTTTGGTTTTACAT-TGT--------------TT-----T-T-TAATTTTTTTTT-----TTT--C-GTGTGTT-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTCTTTAC-AGAACCTTGGGGGGGGGGGGGGGGGGG-A--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGA---ATGTGCA-G-AC-ATAC--------ACTGTT-ATATA--------------------------ATTATAT---------------------A------------------------------------------------------GCA--AA-----TGT-AAT-TTCAGGGAAGGATACATTTTAGT------ATA-TGTACCTCAA-CTTTTT-G-CAA-TAAAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-AACGACT--GTAAACTTTTCA-T-ATT----TTGG-AACTTTTT--AATTTTA--AAAATTATCATAGCGCTCGCGCCGCACCAACTTTTATTCCTTCT-A--AAATACC-GAAGACAC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|4 : tAGGCCAC-AG-CCAA--ATTAAA----AAACATT-G-GT-C-AC-CGGAACCCGCGG-CGCACTTAG-TTTA--CTGCTTTTTCGAA-T-A-T-AATA-T----TAAAAAA--T-AT--CAC-CG-CATCCCTGAAAC-AAAT-TTGCA-CGTTTTC---GCAC---A--TTTTTCGAACCTCT--------------TAT-T-TGTGGA---------TTGG---T-T-T--TTTTTTTTT-----TTT--T-GAA---T-GT-G-TG-GTTGTTC---CTT--ACGTC--TA--ACTC-TTAC-AGAACCTGGG-----GGGGGGGGGGGG-G--------T--TCTGCT--CAAGATTG--A-----------TT-A-TACTA-TGCATG----TAAAAGA---A-GTGCA-TAA--ATAT--------ACTATT-ATATAT------------------------CATTATATAGCAGATGTATTTTCAGGAGGA--------------------T---AC------AT-T------------------TTA--TAATATATGT-A-C-TTCA-----------ACTTTGGG-GCAAAAAATTG-------A-CTTTTT-G---A-T---AA-TGT-T----ATCGCTCGGCC---TCTATT-AT-TTTACAATCGACT--GT-AAC-TTTCA-T-ATT----T--GAAACTTTTT--AATTTTAAAAAAATTATCATAGCGCTCG--CCGCACCAAACTTC-TTCCTTCT-A--AAAT-CC-GAAA--GC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|5 : tAGGCCAC-A--CCAT--ATTAAA----AA-C-TT-G-GT-T-GC-TGGA-CCCGC-G-CGCACTTAG-TTTA--CTGCTTTTC-GAA-T-AAT-AGTA-T----TAAAAAAAAT-AT-------------------------T-T-GCC-CGTTTTC--CGCAC---A--TTTT-CAA--CTCT--------------TAT-T-T--------------TTGGCTTTAT-T--TATTTATTT-----TTTGGT-GTA---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------AAGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGATTTA-GTGCA-GAAG-ATAG--------ACAATT-ATATAT------------------------CATTATAT---------------------AGCAGATGTATTTCAGGAGGAT---ACATTTTAGTAT------------------ATG--CA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTTTG-CAA-T-AAAA-TGT-T----ATCGCTC-ACC---TCTATTCAT-TTTAC-ATCGACT--GA-AACTTTTCA-T-ATTAATTT--G-AACTTTTT--AACTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-ATTTAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTTGTGTGGCc
gi|6 : tAGGCCAC-A--CCAA--ATTAAG----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-C-CACTTAG-TTTA--CTGCTTTTT-GAA-T-AAT-AATA-T----TAAAAGAAAT-AT--C-C-CA-CATCC-TGAAAC-AAAT-T-GCC-C--TTTC--CGCAC---A--TTTT-CAA--CTCT--------------CAC-T-T--------------TT-----T-T-T--TCTTTCTTT-----TTT--T-GTG---T-GT-G-T-TGTTG-TC---CTT--ACGTC--CT--ATTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGAC--CAAGATTG--A-----------TT-ATTTATA-CACAT-----TAAAAGA---A-GTGCA-GAAG-ATAG--------ACTATT-ATATAT------------------------CATTTTAT---------------------A--------------------T---AT------ATAT------------------GTA--CA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTT---AAAATTATCATAGCGCTTGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|7 : GGCCA--A--CCAA--ATTAAA----A----TT-GAGT-CTGT-CGGA-CCA--CG-CGC-CGTAA-TTTA--CAGCTTTTCAGA--T-AA--ATTA-T----TACACAAATT-AT--C-C--G-CATCC-AGAAAC-AACT-T-GTC-CCTTTTC--CGCAC---A---TTT-CGA--CTCT--------------TAC-T-T--------------TTAG---T-T-T--TATTTCAAT-----TT--------------T-A-AGTGTTG-----------------------CTC-GAAC-AGAACC----------TGGGGAAAAAA-T--------T--TGTGCC--CAGAAGTGC-AGAAACAGCACCTTAA-TTATA-T------------AAG----A-GTGCAGGAAG-ATAT--------ACTATT-ATAAAT-------------------------ATTATA
gi|8 : GCCAC-AAACCAATAAT--AA----AA-C-TTAG-GT-C-GC-CG-A-CCCGCT----------------------TTTTCAAAA-T-AAT-AATACT----TAAAAGAAAT-ATATC-C-CG-CATCC-TGAAACAAAAT-T-GCCTCGTTTTTCACGCAC---ATCTTTC-CGA--CTTT--------------TATAT-TGGTTTAATTTATTATT-----T-T-T--TCTTTTTTC-----TTT--TGGTG---T-GTGG-TGTGTTG-TTTCACTT--ACGTC--CCTAACTC-TTAC-AGAACCCT-------GGGGGGGGGGGG-GGGGGGGAAT--CCTG-G--CAAGATTG--AT----------TT-A-TTA
gi|9 : aAT------------------------CATTATAT---------------------A--------------------GCAGAT------GTATTTTA--------------GTA--TA-----GGT-ACC-TTCA-----------ACTTTGGG-GCAAAA-A-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATTGCTC-GTC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTC---AGAATTATCATAGCACTCGC-CCGCCCCAATTTTT-TTCCTTCT-A--AAAT-CC-GAAG--ACATTAATTCCGAAGAAA-TTAAATTGGTGTGGC
blockSeqs : . AA TA . A A A A T T . A CA G G A T . CC . G T C . T ATC . . C A . T G CA TAA TC T AC GTTTTTTGGTTTTA A G GGTTTAATTTATTATT A . AA G GGGGG TGGT TGTT G . T TCA AA CCTA T A TTGGGGGGG T GGGGGGAA CT AC CAGAAACAGCACC A T G TG ATTT T G G ACTATTGGT . AGTCGAGATGTATTCAGGAGGATA AGCAGATGTATTTCAGGAGGATACATTTTAGTAT . ATATA G G GGGAAGGATAC CG A A TACCTCA C T C A AA . . CTTT G . C A A G A C . AATT TG A . AAA T A A TT A . AC ATTAATT CG A
blockSeqs : . G . . . . . . . . . . CG . G A . . TC . . . . . . CA . . . . . . T . . . . . . . . GTGGATTGG . . . T . TTG TG . . . . . CT . . TGGG . GGTA . . AT . . . TG A . . C C . . AGCAGATGTATTTTCAGGAGGATACATT . . . . . G A T . . . . . A . . . . . T . . . . . . C . . . A G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . CC . G A . . CA . . . . . . C . . . . . . . . . . . . . . . TTGGCTT . . . G . GC T . . . . . CT . . CT . AT . . A . . . TG A . . G T . . AGCAGATGTATTTTA . . . . . A A . . . . . . A . . . . . T . . . . . . . . . . A . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . CT . G A . . CA . . . . . . C . . . . . . . . . . . . . . . TTAG . . . T . GT T . . . . . TA . . T . . . . A . . . G A . . G G . . ATACATTTTA . . . . . G A . . . . . . A . . . . . T . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . C . G A . . C . . . . . . C . . . . . . . . . . . . . . . TTG . . . T . TT T . . . . . CT . . . . . . . A . . . T A . . G G . . TTAATTAT . . . . . G A . . . . . . A . . . . . T . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . C . G . . . C . . . . . . A . . . . . . . . . . . . . . . AT . . . A . TC T . . . . . TA . . . . . . . A . . . . . . . . T . . ATATATAT . . . . . G A . . . . . . G . . . . . C . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . C . . . . . T . . . . . . C . . . . . . . . . . . . . . . TT . . . C . TT T . . . . . CT . . . . . . . A . . . . A . . . . . G A . . . . . . A . . . . . C . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . C . . . . . . . . . . . . C . . . . . . . . . . . . . . . TT . . . A . TT T . . . . . CT . . . . . . . A . . . . . . . G . . . . . . . A . . . . . C . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . C . . . . . . . . . . . . . . . TT . . . C . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . C . . . .
blockSeqs : . . . . . . . . . . . . . . . . TT . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : **** ** **** T**** CT**** A************* TG**** G* ** ***** G* *** ** **
originalCons : AGGCCAC-A--CCAA--ATTAAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-CGCACTTAG-TTTA--CTGCTTTTCCGAA-T-AAT-AATA-T----TAAAAAAAAT-AT--C-C-CG-CATCC-TGAAAC-AAAT-T-GCC-CGTTTTC--CGCAC---A--TTTT-CGA--CTCT--------------TAT-T-T--------------TT-----T-T-T--TNTTTTTTT-----TTT--T-GTG---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGA---A-GTGCA-GAAG-ATAN--------ACTATT-ATATAT------------------------CATTATAT---------------------A--------------------T---AC------GTAT------------------GTA--TA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
finalCons : AGGCCAC-A--CCAA--ATTAAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-CGCACTTAG-TTTA--CTGCTTTTCCGAA-T-AAT-AATA-T----TAAAAAAAAT-AT--C-C-CG-CATCC-TGAAAC-AAAT-T-GCC-CGTTTTC--CGCAC---A--TTTT-CGA--CTCT--------------TAT-T-T--------------TT-----T-T-T--TNTTTTTTT-----TTT--T-GTGT----GT-G-TGTGTTG-TC---CTT--ACGTCCT----ACTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGCC--CAAGATTGA-------------TT-A-TTATA-TACATG----TAAAAGA---A-GTGCA-GAAG-ATAN--------ACTATT-ATATAT------------------------CATTATAT---------------------A--------------------T---AC------GTAT------------------GTA--TA-----TGT-ACC-TTCA-----------ACTTTGGGG-CAAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACATCATATAACACTGATTCTACCCTGACATATATGATTGATAAATACTTTCATCAAAGAATTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11 11111111111111 333333333333333333333 11111 222222222 22222222 22222222222222 1 111111 1111 222222222 444444444444444444444444 5555555555555555555555555555555555555555555555555555555555555555555555555555 11111 11111111111 1111111 1111 111 1111111
lowQualScore : 5 11 66 9999 4 8 4 4 8 4 4 4 99 4 1 4 4 66 33 4 4 4 4 9999 4 5555 3 3 3 3 3 3 6 44 555 44 3 44 99999999999999 3 3 555555555555555555555 4 4 55 1 00000 66666 99999 4 4 4 777 55 666666 4 4 888888888 3 55555555 55 66 77777777777777 4 4 0 444444 1111 5 5 66 111111111 5 888888888888888888888888 0000000000000000000000000000000000000000000000000000000000000000000000000000 66 55555 4 4 99999999999 55 2 6 0000000 3 3 3 3 33 3 3 7777 3 555 5 3 3 88 4 4 4 3333 66 4 66 666 8 0 4 4 66 4 4 66 4444444 66 4
lowQualScore : . .. .. .... . . . . . . . . .. . . . . .. .. . . . . .... . .... . . . . . . . .. ... .. . .. .............. . . ..................... . . .. . ..... ..... ..... . . . ... .. ...... . . ......... . ........ .. .. .............. . . . ...... .... . . .. ......... . ........................ ............................................................................ .. ..... . . ........... .. . . ....... . . . . .. . . .... . ... . . . .. . . . .... .. . .. ... . . . . .. . . .. ....... .. .
lowQualScore : 0 99 99 4444 4 9 4 4 9 4 4 4 66 4 1 6 4 11 11 4 4 4 4 4444 0 5555 3 3 3 3 3 3 7 66 888 66 3 66 66666666666666 3 3 000000000000000000000 0 0 55 0 00000 66666 33333 0 0 0 000 55 888888 0 0 333333333 6 99999999 55 11 11111111111111 4 4 0 333333 7777 7 7 44 777777777 7 111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333 11 66666 4 0 00000000000 66 1 7 8888888 3 6 3 3 88 3 3 1111 3 888 8 3 3 66 0 4 4 9999 11 4 11 777 9 1 4 4 11 4 4 11 4444444 11 4
consensus : AGGCCAC-A--CCAA--ATTAAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-CGCACTTAG-TTTA--CTGCTTTTCCGAA-T-AAT-AATA-T----TAAAAAAAAT-AT--C-C-CG-CATCC-TGAAAC-AAAT-T-GCC-CGTTTTC--CGCAC---A--TTTT-CGA--CTCT--------------TAT-T-T--------------TT-----T-T-T--TNTTTTTTT-----TTT--T-GTG---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGA---A-GTGCA-GAAG-ATAN--------ACTATT-ATATAT------------------------CATTATAT---------------------A--------------------T---AC------GTAT------------------GTA--TA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
Reference ( family-155 ) : AGGCCAC-A--CCAA--ATTAAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-CGCACTTAG-TTTA--CTGCTTTTCCGAA-T-AAT-AATA-T----TAAAAAAAAT-AT--C-C-CG-CATCC-TGAAAC-AAAT-T-GCC-CGTTTTC--CGCAC---A--TTTT-CGA--CTCT--------------TAT-T-T--------------TT-----T-T-T--TNTTTTTTT-----TTT--T-GTG---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGA---A-GTGCA-GAAG-ATAN--------ACTATT-ATATAT------------------------CATTATAT---------------------A--------------------T---AC------GTAT------------------GTA--TA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|1 : AGGCCACGA--CCAA--ATTAAACCAAAA-CATT-G-GTGC-GCACGG--CCCAGCG-CTCACTT-G-TTTATACTGCTTTTTCAAAAT-AAT-AACA-TATTTTAAAAAAAAA-AT--C-CACGGCATCC-TGCAAC-AAATCT-GCC-CGTTTTT--CGCAC---A--TTT--CGA--C-CT--------------TAT-T-T--------------TT-----T-TCT--TAATTTTTT-----TTT--T--TG-----GT-GCTGTGTTG-TC---C-T--ACGTCCTCT--ACTC--TAC-TTAACC---------GGAGGGGGGAGG-G--------T--
gi|1 : C---------GGGGGCGGGGGGTGAT------T--TCTGCC--CAAGATTGTAA-----------TT-A-TTATAATACATGGGAATAAAGAT---A-GTGCA-GAAGGATAG--------ACTATTTATATAT------------------------CATTATAT---------------------A--------------------GCAGAT------GTATTTCAGGAGGATACATTTAGTAGTTAC----TGT-ACC-TTC--------------TCTGGT--CAAAAAA-AG-------A--TCTCT-G-CAA-T-AAAACTGTGT----ATCGCTC-GCCAGCTCTATTAAT-TT-AC-ATCGACTTTGT-AACTTTTCA-TTATC----T--G-AACTTTTTTTAATTTT---AAA-TT-TCATCACGCTCGC-CCGCACC-ACCTTT-TTCCTTCT-A--AAAT-CCAGAGG--AC-------C--AAGAAA-TTTAAATGGTGTGgggggacgggaggggggggggcgggggcggggggtgatttctgcccaagattgtaattattataatacatgggaataaagatagtgcagaaggatagactatttatatatcattatatagcagatgtatttcaggaggatacatttagtagttactgtaccttctctggtcaaaaaaagatctctgcaataaaactgtgtatcgctcgccagctctattaatttacatcgactttgtaacttttcattatctgaactttttttaattttaaatttcatcacgctcgcccgcaccacctttttccttctaaaatccagaggaccaagaaatttaaatggtgtgtg
gi|10 : aggccacgaccaaattaaaccaaaacattggtgcgcacggcccagcgctcacttgtttatactgctttttcaaaataataacatattttaaaaaaaaaatccacggcatcctgcaacaaatctgcccgtttttcgcacatttcgaccttatttttttcttaatttttttttttggtgctgtgttgtcctacgtcctctactctacttaaccggaggggggagggtgggggacgggaggggggggggCC-TTCA-----------ACTTTGGGCGCAAAAA--TG-------A-CTTTTT-G-CAAAT-AAAA-TGT-TCTTTATCGCTC-GCC---TCTATT-----TTAC-ATTGACT--GT-A-CTTTTCA-T-ATTC---T--C-AACT----------------AAGCTATGA-ATCGCTCGC-CTGCCCTAA-TTTT-TTCCTTCT-A--AAAT-CC-CAAG--AT-------C--AAGAAAATTAAATTGGTGTGGCtg
gi|11 : atatagcagctgttttcaggaggatAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTGT-ATCGACT--GT-AACTTTTCA-T-ATT----T--A-AACTTTTT--AATTTT---AAAATTGTCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CT-GAAG--AC-------C--AAGAAA-TTAAATTGGTTTGGCc
gi|12 : T-AT--C-C-CG-CATTC-TGAAAC-AAAT-T-GCC-CATTTCC--CGCAC---A--TTTT-TTA--CTCT--------------TAT-T-T--------------TTG----G-G-T--TGTTTTTTTGGGGGGTG--C-GTA---T-AT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACAC-TTAC-AGAACCT--------GGGGGGGGGAGG-GGGTA----T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACAc
gi|13 : T------------------GTA--TA-----TGT-ACC-TTAA-----------ACTCTTTG-GT-AAAAA-TG-------ACCCTTTT-G-CAA-T-AAAA-TGT-A----ATCGCTC-ATC---TCTATTTATATTTAC-ATTG-CTG-GT-TACTTTTC
gi|14 : ttctatacatgtagcgcttgtatttcaggaggatgcattttAA----AA-C-TT-G-GT-C-GC-CGGA-CCCGC-G-CGCACGTAC-TTAA--CAG-TTTTCC--A-T-AAT-AATA-T----TAAAACAAATTAT--C-C-AC-CATAT-GGAAAT-AAAA-T-GTC-CGTTTTC--CGCAC---A--TTTT-TGG---TTT--------------TAC-T-T--------------
gi|15 : -CG-CATCC-TGAAAC-AAAT-T-GTC-CGTTTTC--CACAC---A--TTTT-CGA--CT-T--------------TAT-T-T--------------AT-----T-T-T--TTAAATTTT-----TGG--T-GTG---T-GT-G-TGTGTTG-TC---CTT--GCGTC--CT--ACTC-TTAC-AGAACC---------TGGGGGGGcca
gi|17 : T--C-C-CG-CATCC-TGCAAC-AAAT-T-GCC-CGTTTCC--CGCAC---A--TTTT-CTA--CTCT--------------TAT-T-T--------------TT-----
gi|18 : AAAAAA-TG-------A-CTCTTT-G-CAA-T-AAAA-TGT-T----GTCGCTC-G-----TCCGTTTAT-TTTAC-ATCGACggtg
gi|19 : ---------------------A--------------------T---AC------ATTTTA----------------GTA--TA-----TGT-ATC-TTCA-----------ATTTT-GG-AC-AAAAA-TG-------A-CTTT
gi|2 : aggGCCAC-A--CCAA--ATTAAA----AA-A-CT-G-GTTC-GC-CAGA-TCCGCAGGCGC-CTTAG-T--A--CTGCTTT---GAA-T-AATTAATA-T------AAAAAAAT--T--A-C-CG-CATCC-TGAAAC-AAAT-T-GCCGCTTTGTC--CGCACTAAA--TTTT-GAG--CTCT--------------TTA-T-T--------------TT-----G-G-T--TGTTTTTTT-----TTT--T-GGG---TGGT-G-TGTGTTG-TT---CTTAAACGTC--TA--ACTC-TTACAAGAACT---------GGAGGGGGTAGG-G--------att
gi|2 : C---------GGAGGGGGGGGG-A--------TCTTCTACCACCAAGAGTG--A-----------TT-A-TTACAGTACA-G----TGAAAAA---A-GTGCA-GAAG-ATAACTATTGGTAATATC-ATATATAGTCGAGATGTATTCAGGAGGATACATTTTAT---------------------T--------------------T---AA------TTAT------------------GTA--TA-----TGTGACCGTTCA-----------ACTT-GGG-GCAAAAAAATG-------A-CTTTTT-GCCAA-T--AAA-TGT-T----ATCTCGC-GGC---CCTATTTTA-TTCAC-ATCGA-T--CT-AACTTTCCACT-ATC----T--G-AACTATCT--AATTTTA--AAAATTATCATAGCGCTCGCTTCGCACCAACATTT-TT-CTTCTAA--AAAT-CC-GACG--AC-------C--ACGAAA-TTAAATTGCTGagggggggatacagaacctggaaggggggaggcggagggggggggatcttctaccaccaagagtgattattacagtacagtgaaaaaagtgcagaagataactattggtaatatcatatatagtcgagatgtattcaggaggatacattttatttaattatgtatatgtgaccgttcaacttggggcaaaaaaatgactttttgccaataaatgttatctcgcggccctattttattcacatcgatctaactttccactatctgaactatctaattttaaaaattatcatagcgctcgcttcgcaccaacatttttcttctaaaaatccgacgaccacgaaattaaattgctg
gi|20 : gccacaccaaattaaaaaactggttcgccagatccgcaggcgccttagtactgctttgaataattaatataaaaaaattaccgcatcctgaaacaaattgccgctttgtccgcactaaattttgagctctttattttggttgtttttttttttgggtggtgtgtgttgttcttaaacgtctaactcttacaagaactggagggggtagggagggggggatacagaacctggaaggggggagg-CAA-T-GAAA-TGT-T----ATCGCTC-GCC---CCTGTTTAT-TTTAC-ATCGACT--
gi|3 : AGGCCAC-A--CCAA--ATTAAA----AA-C-TC-G-GT-C-GC-CGAA-CCCG-CG-CGCACTTAGTTTTA--CTGCTTTT-CGAA-TGAAA-AATA-T----TAAAAAATAT-AT--C-T-CG-CATCC-TGAAAC-AAAT-T-GCC-CG-TTTC--CGCAC---A--TTTT-CGA--CTCTGTTTTTTGGTTTTACAT-TGT--------------TT-----T-T-TAATTTTTTTTT-----TTT--C-GTGTGTT-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTCTTTAC-AGAACCTTGGGGGGGGGGGGGGGGGGG-A--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGA---ATGTGCA-G-AC-ATAC--------ACTGTT-ATATA--------------------------ATTATAT---------------------A------------------------------------------------------GCA--AA-----TGT-AAT-TTCAGGGAAGGATACATTTTAGT------ATA-TGTACCTCAA-CTTTTT-G-CAA-TAAAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-AACGACT--GTAAACTTTTCA-T-ATT----TTGG-AACTTTTT--AATTTTA--AAAATTATCATAGCGCTCGCGCCGCACCAACTTTTATTCCTTCT-A--AAATACC-GAAGACAC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|4 : tAGGCCAC-AG-CCAA--ATTAAA----AAACATT-G-GT-C-AC-CGGAACCCGCGG-CGCACTTAG-TTTA--CTGCTTTTTCGAA-T-A-T-AATA-T----TAAAAAA--T-AT--CAC-CG-CATCCCTGAAAC-AAAT-TTGCA-CGTTTTC---GCAC---A--TTTTTCGAACCTCT--------------TAT-T-TGTGGA---------TTGG---T-T-T--TTTTTTTTT-----TTT--T-GAA---T-GT-G-TG-GTTGTTC---CTT--ACGTC--TA--ACTC-TTAC-AGAACCTGGG-----GGGGGGGGGGGG-G--------T--TCTGCT--CAAGATTG--A-----------TT-A-TACTA-TGCATG----TAAAAGA---A-GTGCA-TAA--ATAT--------ACTATT-ATATAT------------------------CATTATATAGCAGATGTATTTTCAGGAGGA--------------------T---AC------AT-T------------------TTA--TAATATATGT-A-C-TTCA-----------ACTTTGGG-GCAAAAAATTG-------A-CTTTTT-G---A-T---AA-TGT-T----ATCGCTCGGCC---TCTATT-AT-TTTACAATCGACT--GT-AAC-TTTCA-T-ATT----T--GAAACTTTTT--AATTTTAAAAAAATTATCATAGCGCTCG--CCGCACCAAACTTC-TTCCTTCT-A--AAAT-CC-GAAA--GC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|5 : tAGGCCAC-A--CCAT--ATTAAA----AA-C-TT-G-GT-T-GC-TGGA-CCCGC-G-CGCACTTAG-TTTA--CTGCTTTTC-GAA-T-AAT-AGTA-T----TAAAAAAAAT-AT-------------------------T-T-GCC-CGTTTTC--CGCAC---A--TTTT-CAA--CTCT--------------TAT-T-T--------------TTGGCTTTAT-T--TATTTATTT-----TTTGGT-GTA---T-GT-G-TGTGTTG-TC---CTT--ACGTC--CT--ACTC-TTAC-AGAACC---------AAGGGGGGGGGG-G--------T--TCTGCC--CAAGATTG--A-----------TT-A-TTATA-TACATG----TAAAAGATTTA-GTGCA-GAAG-ATAG--------ACAATT-ATATAT------------------------CATTATAT---------------------AGCAGATGTATTTCAGGAGGAT---ACATTTTAGTAT------------------ATG--CA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTTTG-CAA-T-AAAA-TGT-T----ATCGCTC-ACC---TCTATTCAT-TTTAC-ATCGACT--GA-AACTTTTCA-T-ATTAATTT--G-AACTTTTT--AACTTT---AAAATTATCATAGCGCTCGC-CCGCACCAACTTTT-TTCCTTCT-ATTTAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTTGTGTGGCc
gi|6 : tAGGCCAC-A--CCAA--ATTAAG----AA-C-TT-G-GT-C-GC-CGGA-CCCGCCG-C-CACTTAG-TTTA--CTGCTTTTT-GAA-T-AAT-AATA-T----TAAAAGAAAT-AT--C-C-CA-CATCC-TGAAAC-AAAT-T-GCC-C--TTTC--CGCAC---A--TTTT-CAA--CTCT--------------CAC-T-T--------------TT-----T-T-T--TCTTTCTTT-----TTT--T-GTG---T-GT-G-T-TGTTG-TC---CTT--ACGTC--CT--ATTC-TTAC-AGAACC---------GGGGGGGGGGGG-G--------T--TCTGAC--CAAGATTG--A-----------TT-ATTTATA-CACAT-----TAAAAGA---A-GTGCA-GAAG-ATAG--------ACTATT-ATATAT------------------------CATTTTAT---------------------A--------------------T---AT------ATAT------------------GTA--CA-----TGT-ACC-TTCA-----------ACTTTGGG-GCAAAAAA-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATCGCTC-GCC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTT---AAAATTATCATAGCGCTTGC-CCGCACCAACTTTT-TTCCTTCT-A--AAAT-CC-GAAG--AC-------C--AAGAAA-TTAAATTGGTGTGGC
gi|7 : GGCCA--A--CCAA--ATTAAA----A----TT-GAGT-CTGT-CGGA-CCA--CG-CGC-CGTAA-TTTA--CAGCTTTTCAGA--T-AA--ATTA-T----TACACAAATT-AT--C-C--G-CATCC-AGAAAC-AACT-T-GTC-CCTTTTC--CGCAC---A---TTT-CGA--CTCT--------------TAC-T-T--------------TTAG---T-T-T--TATTTCAAT-----TT--------------T-A-AGTGTTG-----------------------CTC-GAAC-AGAACC----------TGGGGAAAAAA-T--------T--TGTGCC--CAGAAGTGC-AGAAACAGCACCTTAA-TTATA-T------------AAG----A-GTGCAGGAAG-ATAT--------ACTATT-ATAAAT-------------------------ATTATA
gi|8 : GCCAC-AAACCAATAAT--AA----AA-C-TTAG-GT-C-GC-CG-A-CCCGCT----------------------TTTTCAAAA-T-AAT-AATACT----TAAAAGAAAT-ATATC-C-CG-CATCC-TGAAACAAAAT-T-GCCTCGTTTTTCACGCAC---ATCTTTC-CGA--CTTT--------------TATAT-TGGTTTAATTTATTATT-----T-T-T--TCTTTTTTC-----TTT--TGGTG---T-GTGG-TGTGTTG-TTTCACTT--ACGTC--CCTAACTC-TTAC-AGAACCCT-------GGGGGGGGGGGG-GGGGGGGAAT--CCTG-G--CAAGATTG--AT----------TT-A-TTA
gi|9 : aAT------------------------CATTATAT---------------------A--------------------GCAGAT------GTATTTTA--------------GTA--TA-----GGT-ACC-TTCA-----------ACTTTGGG-GCAAAA-A-TG-------A-CTTTTT-G-CAA-T-AAAA-TGT-T----ATTGCTC-GTC---TCTATTCAT-TTTAC-ATCGACT--GT-AACTTTTCA-T-ATT----T--G-AACTTTTT--AATTTC---AGAATTATCATAGCACTCGC-CCGCCCCAATTTTT-TTCCTTCT-A--AAAT-CC-GAAG--ACATTAATTCCGAAGAAA-TTAAATTGGTGTGGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACATCATATAACACTGATTCTACCCTGACATATATGATTGATAAATACTTTCATCAAAGAATTTA