lowQualScore : 55 1 1 111 111 2 1111 1 2 1111111 111 222 44444444444444444 555555555555555 22222 1111 222 555555 11 11 11 22 2 1 11111 1 22222 2222222222 11 111111 1111 1 11 11 11 22222222 111 1 111111 111111 11111 1 11 1 22 2222222 33333333333333333333333333 33333 22222222222222222 2222222222 55555555555555555555555555555555555555555555
lowQualScore : 6 55 5 2 7 6 8 111 6 6 111 5 6 4444 4 6 1 8 0 8888888 66 0 000 444 0 44444444444444444 77 3 5 5 999999999999999 77 88888 0 2222 111 777 5 99 555555 66 0 0 66 11 11 77 1 0 6 3 99 6 6 7 66666 6 3 6 1 88888 0 6666666666 8 99 99 11 5 1 3 444444 3 5 1111 0 11 11 5 5 0 88 2 44444444 1 77 333 5 1 666 111111 888 888888 22222 66 1 5 5 4 77 77 6 0 11 0 4 8 4 11 33 4 4444444 4 77777777777777777777777777 5 66 5 888 5 22222 4 44444444444444444 5 77 5 8888888888 5 5 77777777777777777777777777777777777777777777 5 5
lowQualScore : . .. . . . . . ... . . ... . . .... . . . . . ....... .. . ... ... . ................. .. . . . ............... .. ..... . .... ... ... . .. ...... .. . . .. .. .. .. . . . . .. . . . ..... . . . . ..... . .......... . .. .. .. . . . ...... . . .... . .. .. . . . .. . ........ . .. ... . . ... ...... ... ...... ..... .. . . . . .. .. . . .. . . . . .. .. . ....... . .......................... . .. . ... . ..... . ................. . .. . .......... . . ............................................ . .
lowQualScore : 0 00 0 5 3 0 0 777 7 7 777 6 7 2222 0 0 4 6 4 6666666 99 4 777 333 7 77777777777777777 44 0 0 7 333333333333333 99 11111 1 1111 666 666 7 22 000000 22 8 6 00 00 00 00 0 0 7 5 22 7 7 5 77777 7 2 7 2 33333 8 6666666666 0 22 22 00 7 7 6 444444 2 0 9999 2 66 99 0 0 1 55 9 99999999 8 99 999 0 4 666 555555 888 555555 55555 99 6 7 3 3 99 99 3 4 44 0 4 9 4 88 88 4 2222222 4 66666666666666666666666666 0 99 0 888 0 00000 9 00000000000000000 7 99 7 3333333333 7 7 44444444444444444444444444444444444444444444 7 7
consensus : AAAAGGCCTACGGACNAGGCGTAAGCTA-AGT---CGGGC-GT-AAAAACAGGA---CTAAATCGTAAAATCG----GACTAAGNTGCGTTTCACAAAACAGACTACA-TTTGCACCCGACTA-------AATCTATGGCTTAAA-NTTAGGCCCTGCTCATGACTA-GGCGTA----ACTCNTAGTCTGTAAA-CAACTAAAAG-ANTANTGGCGACGATGTTGCTT--AT--AT-AGCATA----TCTAATTATG-CTTATCGGTAACT-AT--TCCTCGTTTTACACGTA-AC-TGTATATTTTGAAATATAAANGTGT--AATTTCTATGAGAATGGG--AAAAAA-TAGCTAACTCGTTTAAAA-GATGTA--TGCAAAT-CATTCCGG-----GCGTCTTT-TTG-CAGCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTA-NT-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG--AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTA-----GCT---AATCATG----AAATA-----AA--ATACAATGTAT-GTANAAATG--C--ATGGTCCTGAAAATAC-AT-TACAGTT-T-C-TT--AAAAAATC-T---G---TTTTAAC-GTTAAGTCTA--CATTATTNAATTGTAAAA-TT-TGTAA--ATAATGACT-GAATCA---A-ATGAT---GCCCCCACT-CCCCA---CCC-CC-AAAAATCC-ATA--TCAGAA-ATAT--------A-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
Reference ( gi|2 ) : AAGAGG--TACGGACCAGGCGTA-GCTA-AGT---CGGGC-GT-AAAAACAGGA---CTAAGTCA-AAAATCG----GACTAAGATGCGTTTCACAAAGCAGACTACA-TT-GCACCCGACTA-------AATTTATGGCTTAAA-TTTAGG-C-TGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTGAA-CAGTTATCCG-GTTATTGGCGATGATGTTGCTT--AT--A--AGCATA----TCTAATTATG-ATTATCGGTAACT-AT--TCCTCGTTTTACACGTATACATGTATATTTTGAAATATAAAAATGT--AATTTCTATGAGAATGGG--AAAAA--TAGCTAACTCGTT-AAAA-GATGTA--TGCTAAT-CATCCCGG-----GCGTCTTT-TTG-CATCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTA-GT-ATGCTTCATTTACAGGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATATACAATAAATTTT--AT-CAAA-CATACCGTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG--AACCCTTTTTTT-AATGTCAAAATCGATTGAATTGTTTTAAAAGTTGCTA-----ACT---AATCAGG----AAATA-----AA--ATAAAATGTAT-GTAGAACTG--C--ATGGCCCTGAAAATAC-AT-TACAGTT-T-C-TT-AAAAAAATC-T---G---TTTTAAC-GTTAAGTCT---CATTATTGAATTGT-AA--TT-TGTAA--ATAATGACT-GAATCA---A-ATGAT---G-CCCCACT-CCCCA---CCC-CC-AAAAATTC-ATA--TCAGAA-ATAT--------A-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
gi|9 : AAAAGGCCTACG-ACCAGTCGTAAGCTA-AGT---CGGGC-GT-AAAAACAGGA---CT
gi|1 : ggctttgtaggctgaaccgtaagctccaggggcccgtttcacaGACGAGGCG-A-G--A-AGTAGTCGGGTTGTTAAAAACAGGAGGACTA-GTCATGAAATCG----GACTAAGATGCGTTTCACGAAACAGACTACA-TTTGCACCAAACTA-------AATC-ATGACTTAAA-ATTAGC-C-TGC------CTA-G----------CTCGCAGT-TGTAAAATAGTTATAAGTATTAT-GGCGATGATGTTACTTTTAT--A--AGCCTA----TCTAATTAT----------------AC--TCCTCGTTTTACACGC-----TGTAG---TTGAAATATACAAGTGT--AATTTCTATGACAATGGG--AAAAAAATAACAAACTCTTA-AAAA-GATGTA--TGCAAATTCATTCCGG-----GCGTCTTT-CTG-CG-CTTGTACATGCATGTGTATCCCCTGCTCCT---CT-T--TTTTTTCAGTAGACCAAGTA-TT-ATGTTCCATTAACAGAT-AACTCTGAG-AAAATAAATAATTGGA------TATCT-GTCCT-AAT----AATAAACAATATTTTTTT-ATTCAAA-T-TACACT-CCAAACATAC--------TAGTTAGCCATAAGTATATTCCCGGGAAACA---TTTTT-AATGTCAAAATCTATTGAATTGTTTTTAAAATTGCTA-----GCT---AATCGTG----AA-TA-----AA--ATACAATGTATTGTACAACTG--C--ATTGTCGTGAAA-TACTATGTACAGTT-TTC-TT-AAAAA--TC-T---------TCCACAGCTA--------CATTATTTTATTGTCAA--TT-----A--ATA-TGACT-GAATCA---G-ATGAT---GCCCCCACCACCCCT---TCC-CC---AAATCC-ATA--TAAAAA-ATAT--------T-TA-ATTCCTA-TC-AATA-T----AAACTTTT--------TTTT----T-------TAAAATTG-TG-CTTAAAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatatatctaattatgcttatcggtaacta
gi|3 : ttcacaaaaaggcctatAGGCGTAAGCTA-AGT---CGGGC-TT-AAAATCAGGA---CTAAGTCATAAAATCG----GACTAAGATGCGTTTCACAAAACAGACTACA-TTTGCACCCGACTA-------AATCTATGTCTTAAA-GTTAGG-CCTGCTCATGACTA-GGCGT-------------------AA-CA-------------TTGGCGATGATGTTGCTT--AT--ATAAGCATAATTATGTAATTATG-CTTATCGACAACT-AT--TCCTCGTTTTACACGTATA--------TTTTGAAATATAAATAAGT--AATTTCTATGAGAATGGG--AAAAAA-TAGCTAACTCGTTTAAAA-GATGTA--TGCAAAT-CATTCCGG-----GCATACTT-TTG-CAGCTTTTATATGT------ACCCCCA---CCCACTCT-TCTTTTT--CAGTAGACTAAGTA-TT-ATGTTTCATTTACAAGATAACTTTGAGTTAAAGAGATAATTAGA------TATCTTGTCGT-AATT---GATAAACATTAAGTTTT--AT-CTAA-CATACAGAGTCATATACACAGTA----TAGTTAACCATAAGTATATCCCCGG--GAACTTTTCTTT-TATGTCAAAATCGATTGAATTGTTTTAAAAGTTGCTA-----GCT---AATCATG----GGATT-----AA--ATACAATGTAT-ATAGAAATG--C--ATGGCCCTGAACATAC-AT-TACAGTT-T-C-TT--AAAAAATC-T---G---TTTTAAT-GTTAA-TCTG--CATTA-TGTATTGTAAA--TT-TGTAA--ATAATGACT-GAGTCA---A-ATGAT---GCCCCCACT-CCCCA---CCC-CCTAAAAATTC-ATA--TCAGAA-ATAT--------A-TA-ATTCCTA-TC-AATA-TAAAAAAAT------------TTTT----------------AATC-TG-CATAAAGTgaaaatcattgcatgaattaataaaataaggccacatcg
gi|12 : ttcacaaaaaggtA-GCTT-AGT---CGGGC-GC-AAAAACAGGA---CTAAATCG-TAAATTGGTTCGGCTAAGTTGCGTTTCATAAAACAGACTACATTT-GCACCCCACTA-------AA-TGATGGCTTAAA-CTTAGGCC-TGCTCATGATTA-GGTGTA----AGTTAAAGTCTGTAAA-CAACTG--------AAGGGTGACGATGTTG-TT--A---A--AGCATA----TCTAATT
gi|11 : tttcacaagcggtgtacgaagtaA-ACTATAAC---CAGGC-GT-AAA--CAGGA---CTACATCGTAAAATGA----GACGAAGTTGCGTTTCATAAAACAA--TACA-TTTACAACCGACTATGACTTTAATCTATAGCT--------AGG-CCTGCTCATGATTACAGTATATTTGAGTCTTCGTCTGTAAC-CAACTAAACG-AATAATGGC---AACGTTTCTT--ATAAA--AGCATG----TCTAATTTTGCATTTTCCTAAACTCAT--TCt
gi|13 : tttcacaaaaag---CGGGC-GT-TAAAATAGGA---CTGAATCATAAGGTCG----AACTAAGTTGCGTTTTGTAAAACAGACCACAATT-GCACCCGACTA-------AATACATGGCTTCAA-TGTAGGCC-TGCTCATG-----------------TCTCAGTCTGTAAA-TAACTAAAAG-AATAATGGCGAC-ATGTTGCTT--ATGGA--AGCAt
gi|7 : tttcacaagaggcaaacaatcagcttaaatatatc-AAAATCG----GACTAAGATGCGTTTCACTAAACAGACTACA-TTTGCTCCCAACTT-------AATTCATGACTTAAAATTTAGG-CCTGCT-------------TA----ACTCGTAGTTTGTAAA-CAATTAAAAG-GTTTATGGCGATGATGTTGCTT--AT--ATAAGC--------CTAATAAT-----ATC--TAATT-ATACTCCTCGTTTTGCACGT------GTATATTT-GAAATATACAAGTGT--AATTTCTATGAGAATGGGGAAAAAA--TAGCTAACTCTTT-AAAA-GATGTA--TGCAAAT-TATTCCGG-----GCGTCTTT-TGGATATCTTGGATATCT-----T
gi|23 : TTTCACAAAACGGACTACA-TTTGCACCCAATGA-------AATTTAGGACTTAAA-TGTAGGCC-TGCTCg
gi|4 : TA-GGCGTA----ACTCTTAGTCTGTGAA-CAGCTAAATG-GCTATTGGCGATGATGTTGCTT--AT--AT-AGCATA----TCTAATTATG-CTTATTGGTAACT-AT--TCCTCGTTTTACACGTACAC--GTATATTTTGAAATATAAA--TGT--AATTTCTATGAGAATGGG--AAAAAA-TAGCTAACTCGTTTAAAG-GATG-A--T----AT-CATACCGACTTAAGCGTCTTT-T-G-CATCTTGTATATGT-----TACCCCCC---CCC---CTCT--TTTT--CAATAGACTGAGTATAC-ATGCTTCATTTACAGGTAAACTTTGAGTAAACGAAATAATTGGA------TATCTTGTCCT-AATT---GATATACAATAAGTTTT--AT-CAAACCATACCTTGTCAAATATACAAC-----TAG-TAGCCA-AAATATATCCCGGG--AACCCTTTTTTTAAATGTCAAAATCGATTGAATTGTTTTAAAAGTTACTA-----ACT---AATCAGG----AAATA-----AA--AT-AAATGTAT-GTAGAACTGATCGAATGGCCCTGAAAATAC-AT-TACAGTT-T-C-TTAAAAAAAATC-T---G---TTTTAAC-GTGAAGTCTATACATTATGTAATTGTAAA--TT-TGTAA--ATAATGACT-GAATCA---A-ATGAT---GCCCCCACT---CTA----CC-CG-AAAAATTC-ATA--TCAG-A-ATAT--------A-TA-ATTCCTA-TCAAATA-T-----AAC------------TTTTTTTAA-------AAAAAATC-TG-CTTAAAGT
gi|9 : ATA----TCTAATTATG-CTTATCGGTAACT-A
gi|22 : ggctttgtaggctgaaccgtaagctccaggggcccgtttcacaaaaaggcctacgaccagtcgtaagctaagtcgggcgtaaaaacaggactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatTAATTGTG-CTTATCGGTGAGT-AT--TCTTC-TTTTG-------ACATGTATATTTTGAAATATAAATGTGCGAAAAATCTATGACAACGAA--AAAAA--
gi|8 : AACTAAATCGTT-AACACAATAAA--TGCAAAT-CATTCCAG-----GACTCTTTTTTG-CTGCTCACACCTGT-----T--TTTCT---GTC---CT-T--TTTT--CAATCGGTTAAA-A-GT-GAGC------TATAAGTTAATTGTGA--AAAAGTTATATTTGGATACATGTATCTTGTCCTAAATTTAGAATAAACAAT--ATTTT--TT-------------TATCAAATATACA--C----TAGGTAGCCATACTTGTACTTGCGG--AAACTTTTCTTT-
gi|17 : aaaaaacaacaacaacaaAACTCATTTAAAA-GATGTACATGCAAAT-CATTCTGG-----GCGTCTTT-TTG-CAGCTTGTATATGTATG--TACCCCC-----CT---CT-T--TTTT--CAGTCGACTAAGTA-TT-ATGTTTCATTTACAAGTcacaatatatacatgtatgactcgtgtttcacttaaaacagcta
gi|26 : --TTTT--CAGTAGACTAAGTA-GT-ATGCTTCATTTACAG
gi|5 : AGACTAAGTA-ATCATGTTTCATTTACAAGTTAGCTTTGAGTAAAAGAAATAATTGGA------TATCT-------AA----------ACAATGAGTTTG--AT-CAAA-CATGCATTTTCAAAAATGCAGTAGGCCTAGTTAGCCATCAGTATATTCCCGG--GAACCTTTTTTT-TTTTTCATAATC---TACATTTCATTAAAAACAGCTA-----
gi|16 : CAGTCACAAGTTAACTTTTAGCAAAAGAAATAATAGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATAC--------ATATACA-TA----TA---AG-TATAAGTATATCttttgctgtagttttaatgtcaaaatctattgaattcttgagctgttagcttattataaaatgaatacaatgtatgtaaaaatgcatggtcctgaaaaactctagtttctttgaaaatctcagattttaacattaagtcgtaaagttgtaaatagtgactgaatcaaatgattacaccccctccttaattcctactaaaaatccatatcagaaatatctacatatataattcctatcaatataaactttaaaaaaatcattaaaagtggaaatcattgcatgaatttattgtaaacataatataaggtcacacggggcct
gi|20 : tctggcTAACTTTGAGTAAAAGAAATAATTGGA------TATGTTGTCCT-AATT---GATATACAATAA--TTT--AT-CAAA-CATACCGTGTGAAATATACAG------TAGTTAGCCATAAATATATCg
gi|6 : TGGA------TATCTTGTCCT-AATG---AATAAACAATATTTTTTTTAT-CAAA-CATACACTGTCAAATATACAGTA------GTTAGCCATAAGTATATCCCGGG--AAACATTTTA---AATGTCAAAATCTATTGAATTGTTTTAAAATTTGCTA-----GCT---AATCGTG----AAATA-----AA--ATACAATGTAT-GTACAACTG--C--ATGGTCCTG-AAATACTATGTACAGTT-T-C-TT--TAAAAATC-TCACA---TTTTAGC-GTTAAGTCTA--CATTATT------T-A----T-TGTAA--ATTATGACT-GAATTATCTATATG-T---G-CCCCCCC-CCCCA---TTT-CC-TACAAACC-ATAAGTAAGAAGATAT--------T-TATAGTCCTATTCAGATATT----AAACTATAATTTCTTTTTTT----A-------GATAAATTGTGACTTAAAG
gi|18 : GTGTCAAATATACAGTA------ATTAGTCATAGGTATATCCCCGG--AA-ACTTTATTA-AATGTCAAAATATATTAAATTGTTTT--GAGTTACTA-----GCT---AATCATG----AAATA-----AA--ATA
gi|5 : aTTTT-AATGTCAAAATCTATTGAATTCTT----GAGCTGTTA-----GCT---TATTATA----AAATG-----AA---TACAATGTAT-GTAAAAATG--C--ATGGTCCTGAAAA----AC-TCTAGTT-T-C-TT-TGAAAA-TC-TCAGA---TTTTAAC-ATTAAGTC----------------GT-AAA-GT-TGTAA--ATAGTGACT-GAATCA---A-ATGATTACA-CCCC-CT-CCTTAATTCCTACT-AAAAATCC-ATA--TCAGAA-ATATCTACATATA-TA-ATTCCTA-TCAA-TA-T----AAAC-------------TTT----A-------AAAAAATC--A-TTAAAAGTca
gi|10 : agactaagtaatcatgtttcatttacaagttagctttgagtaaaagaaataattggatatctaaacaatgagtttgatcaaacatgcattttcaaaaatgcagtaggcctagttagccatcagtatattcccgggaaccttttttttttttcataatctacatttcattaaaaacagctattttgctgtagTTGAACTCTT----AAGCTACTAGATACACTTGTAATCATA----AAATA-----CATTGTACAATGTTT-GTAAAAATG--C--TTGATCCT-AAAATA--AT--ATAGTT-T-CCTT-GAAAATCTCAT---A---TTTT----GTTTA----------TATTGAAACGT-AAA-CT-TATCA--ATAATGACT-GAATCA---A-TTAAT-----------------------------AATATTA-ATA--TCAGAA-ATAT--------C-TA-ATTTATA-TC------------AAC------------TTCC----A-------AAAAATTC-TG-CTTAAAGTggaaatcattgcatgaatttattgtaaacataatataaggtcacacggggcct
gi|21 : acggaccccgggacacaccagaggtgTGCTA-----ACT---AATCATACCATAAATACCAAGAA--ATACAGTGTAT-GTATAAATG--C--ATGG---TTAAGAAAT-AA-CACAATTAC-C-TT---GAAAATC-A---GAGATTTTAAC-ggaattcattgcatatatctaaatataagtctacct
gi|19 : CCTGAAAATAC-AT-TACAGTT-T-C-TT--AAGAAATC-T---G---TTTTAAC-GTTAAGCCTA--CATGA-TGAATTGT-AAATTT-TATAAATATAATGACT-GAATCA---A-ATGAT---G-CCCC
gi|14 : AGTT-TGC-TT-AAAA--ATC-T---G---TTTTAAC-G-TAAGTCTA--CATTATGTAATTGTAAA--TTGTGTAA--ATAATGACTGGAATCA---A-ATGATC--GCCCCCACT--CCCA---CCT-CC-AAAAATTCAATA--TCAGAA-ATAT--------ATTA-ATTCCTA-TC-AATA-T------AC------------TTTA----AAAAAAATAAAAAATC-TG-CTTAAAGTcac
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): CTGAAATTACACATTCTTAGTACAAGGCGAGTTTATGTCATGTTTTTGTTATGTTTGAAAAGCTGCAAAAATGACTGAAACATAAACAATGGATGTCCCTACCCCGCACCCCCCA
Unaligned ( gi|24 ): TGAAAATCATATGCACAATTGAATTAATTAAATTAGGTCACACAGGTCC
Unaligned ( gi|25 ): ACGGACCCCTGGACACACCAGAGGTGATGCATAGAACTCTTA
Alignments
lowQualScore : 2 111 1111 1111111 222 22222222222222222 11111111 1 1111 5555555 11111 22222 1111 111 111111 11 11111111 11111 11111 11 11111 22222222222 1111 1 11111 22222222 2 11111 4444444444444444444444444444
lowQualScore : 6 3 1 8 6 5 5 000 4 0 2222 1 6666666 99 2 5 000 44444444444444444 33 1 5 0 88888888 2 4 6 5 3 0000 1 0 99 1111111 7 99 6 8 6 1 77 5 44444 55 5 22 44444 3333 111 6 77 77 66 5 0 2 222222 1 4 9999 77 00 4 4 99 1 88888888 0 5 6 4 1 0 11111 777 9999 11111 66 5 1 3 66 66 0 0 8 22 3 66666 55555555555 4 55 2 1111 7 22 55 4 77777 4 4 4 4 0 88 999 66 77 5 66 33333333 55 5 5 1 5 66666 0000000000000000000000000000 5 5
lowQualScore : . . . . . . . ... . . .... . ....... .. . . ... ................. .. . . . ........ . . . . . .... . . .. ....... . .. . . . . .. . ..... .. . .. ..... .... ... . .. .. .. . . . ...... . . .... .. .. . . .. . ........ . . . . . . ..... ... .... ..... .. . . . .. .. . . . .. . ..... ........... . .. . .... . .. .. . ..... . . . . . .. ... .. .. . .. ........ .. . . . . ..... ............................ . .
lowQualScore : 7 3 0 0 7 7 7 000 2 7 1111 0 2222222 22 8 0 000 33333333333333333 88 4 0 5 55555555 5 4 5 0 1 6666 4 7 22 2222222 5 22 7 0 6 7 99 7 33333 99 7 44 33333 5555 777 7 99 99 00 0 9 0 888888 9 4 6666 99 66 4 4 33 6 77777777 7 0 5 4 9 9 11111 888 4444 11111 11 0 0 0 99 99 8 8 0 99 6 55555 77777777777 6 55 4 9999 9 33 55 0 00000 0 0 0 0 7 33 888 11 88 0 99 11111111 55 0 0 6 0 99999 6666666666666666666666666666 0 0
consensus : AAAAGGCCTACG-ACCAGGCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAATCGTAAAAT----CGGACTAAGNTGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGGCTTAAANTT-AGGCCCTGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTAAA-CAACTAAANG-GNTANTGGCGACGATGTTGCTTAT-ATAAGCATA----TCTAATTATGCTTATCGGTAACTAT--TCCTCGTTTTACACGTA--C-TGTATATTTTGAAATATAAAAGTGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCG-----GGCGTC-TTTTTG-CAGCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTA-NT-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----AAATA-----AA--ATACAATGTA-TGTANAANTG--C--ATGGTCCTGAAAATAC-AT-TACAGTTT-CTT--N--AAAAATC---T---G---TTTTAACGTTAAGTC--TACATTATTTAATTGTAAAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
Reference ( family-1542 ) : AAAAGGCCTACGGACNAGGCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAATCGTAAAAT----CGGACTAAGNTGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGGCTTAAANTT-AGGCCCTGCTCATGACTA-GGCGTA----ACTCNTAGTCTGTAAA-CAACTAAAAG-ANTANTGGCGACGATGTTGCTTAT-ATA-GCATA----TCTAATTATGCTTATCGGTAACTAT--TCCTCGTTTTACACGTA-AC-TGTATATTTTGAAATATAAANGTGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCG-----GGCGTC-TTTTTG-CAGCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTA-NT-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----AAATA-----AA--ATACAATGTA-TGTANAAATG--C--ATGGTCCTGAAAATAC-AT-TACAGTTT-CTT--A--AAAAATC---T---G---TTTTAACGTTAAGTC--TACATTATTNAATTGTAAAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CC-AAAAATCC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
gi|1 : AAAAGGCCTATG-ACGAGGCGAGAAGT---AGTCGGGTTGTTAAAAACAGGAGGACTAG-TCATGAAAT----CGGACTAAGATGCGTTTCACGAAACAGACTACATTTGCACCAAACTA-------AATC-ATGACTTAAAATT-AG--CCTGC------CTA-G----------CTCGCAGT-TGTAAAATAGTTATAAGTATTA-TGGCGATGATGTTACTTTT-ATAAGCCTA----TCTAATTATACT----------------CCTCGTTTTACACG----C-TGTAG---TTGAAATATACAAGTGT--AATTTCTATGACAAT-GGGAAAAAAATAACAAACTC-TTAAAAAGATGTA--TGCAAATTCATTCCG-----GGCGTC-TTTCTG-C-GCTTGTACATGCATGTGTATCCCCTGCTCCT---CT-T--TTTTTTCAGTAGACCAAGTA-TT-ATGTTCCATTAACA-GATAACTCTGAG-AAAATAAATAATTGGA------TATCT-GTCCT-AAT----AATAAACAATATTTTTTT-ATTCAAA-T-TACACT-CCAAACATAC--------TAGTTAGCCATAAGTATATTCCCGGGAAACATTTT--T-AATGTCAAAATCTATTGAATTGTTTTTAAAATTGCTAG-----CT---AATCGTG-----AATA-----AA--ATACAATGTATTGTACAACTG--C--ATTGTCGTG-AAATACTATGTACAGTTT-TCT--T--AAAAATC------------TTCCAC----AG-C--TACATTATTTTATTGT-CAATT----A--AT-ATGACT-GAATCA-----G-ATG-A-T-GCCCCCACCACCCCT--TCC--CC---AAATCC-ATA--TAAAAA--------ATATT-TA-ATTCCTA-TC-AATA-T----AAACTTTT--------TTTT----T-------TAAAATTG-TG-CTTAAAGT
gi|10 : ttcacaTGTTGAACTCTT----AAGCTACTAGATACACTTGTAATCATA----AAATA-----CATTGTACAATGTT-TGTAAAAATG--C--TTGATCCT-AAAATA--A--TATAGTTT-CCT--T--GAAAATCTCAT---A---TTTT--------GTT--TA---TATTGAAACGT-AAACTTATCA--ATAATGACT-GAATCA-----A-TTA-A-T---------------------------AATATTA-ATA--TCAGAA--------ATATC-TA-ATTTATA-TC------------AAC------------TTCC----A-------AAAAATTC-TG-CTTAAAGTgaaaatcattgcatgaattaataaaataaggccacatcg
gi|11 : acggaccccgggacacaccagaggAACTATAACCAGGC-GT-AAA--CAGGA---CTACATCGTAAAAT----GAGACGAAGTTGCGTTTCATAAAACAA--TACATTTACAACCGACTATGACTTTAATCTATAGC-------T-AGG-CCTGCTCATGATTACAGTATATTTGAGTCTTCGTCTGTAAC-CAACTAAACG-AATAATGGCAAC---GTTTCTTATAAAA-GCATG----TCTAATTTTGCggaattcattgcatatatctaaatataagtctacct
gi|12 : tttcacaaaaagG-TAAGCTT-AGTCGGGC-GC-AAAAACAGGA---CTAAATCGTAAATTGGTTCGG-CTAAGTTGCGTTTCATAAAACAGACTACATTTGCACCCCACTA-------AAT-GATGGCTTAAACTT-AGG-CCTGCTCATGATTA-GGTGTA----AGTTAAAGTCTGTAAA-CAACTGAAG--------GGTGACGATGTTG-TTA--A-A-GCATA----TCTAATTattttcctaaactcattct
gi|13 : tttcacaagcggtgtacgaaCGGGC-GT-TAAAATAGGA---CTGAATCATAAGGT----CGAACTAAGTTGCGTTTTGTAAAACAGACCACAATTGCACCCGACTA-------AATACATGGCTTCAATGT-AGG-CCTGCTCATG-----------------TCTCAGTCTGTAAA-TAACTAAAAG-AATAATGGCGAC-ATGTTGCTTAT-t
gi|14 : tttcacaagaggcaaacaatcagcttaaatatatcAGTTTGCTT--A--AAAA-TC---T---G---TTTTAACGT-AAGTC--TACATTATGTAATTGTAAATTGTGTAA--ATAATGACTGGAATCA-----A-ATG-A-TCGCCCCCACT--CCCA--CCT--CC-AAAAATTCAATA--TCAGAA--------ATATATTA-ATTCCTA-TC-AATA-T------AC------------TTTA----AAAAAAATAAAAAATC-TG-CTTAAAGTggaagca
gi|15 : CTGAAATTAC-A----CA--TT-CTT--AGTACAAGGC---GA--G---TTT--ATGTCATGTT--TTTGTTATGT--TTG-AAAAGCTGCAA--A-AATGACT-GAAACATAAACA-ATGGA-T-GTCCCTACC-CCGCA--CCC--CC-
gi|16 : CAGTCACAAGTTAACTTTTAGCAAAAGAAATAATAGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATAC--------ATATACA-TA----TA---AG-TATAAGTATATCca
gi|17 : tctggcAACTCATTTAAAAGATGTACATGCAAAT-CATTCTG-----GGCGTC-TTTTTG-CAGCTTGTATATGTATG--TACCCC-----CCT---CT-T--TTTT--CAGTCGACTAAGTA-TT-ATGTTTCATTTACAAGTg
gi|18 : AGTGTCAAATATACAGTA------ATTAGTCATAGGTATATCCCCGG-AAAC-TTTATTA-AATGTCAAAATATATTAAATTGTTTTGA--GTTACTAG-----CT---AATCATG----AAATA-----AA--ATACA
gi|19 : CCTGAAAATAC-AT-TACAGTTT-CTT--A--AGAAATC---T---G---TTTTAACGTTAAGCC--TACATGA-TGAATTGTAAATTTTATAAATATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCAC
gi|2 : AAGAGG--TACGGACCAGGCG-TA-GCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAGTCA-AAAAT----CGGACTAAGATGCGTTTCACAAAGCAGACTACATT-GCACCCGACTA-------AATTTATGGCTTAAATTT-AGGC--TGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTGAA-CAGTTATCCG-GTTATTGGCGATGATGTTGCTTAT-A-A-GCATA----TCTAATTATGATTATCGGTAACTAT--TCCTCGTTTTACACGTATACATGTATATTTTGAAATATAAAAATGT--AATTTCTATGAGAAT-GGG-AAAAA-TAGCTAACTCG-TTAAAAGATGTA--TGCTAAT-CATCCCG-----GGCGTC-TTTTTG-CATCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTA-GT-ATGCTTCATTTACAGGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATATACAATAAATTTT--AT-CAAA-CATACCGTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AACCCTTTTTTT-AATGTCAAAATCGATTGAATTGTTTTAAAAGTTGCTAA-----CT---AATCAGG----AAATA-----AA--ATAAAATGTA-TGTAGAACTG--C--ATGGCCCTGAAAATAC-AT-TACAGTTT-CTTA-A--AAAAATC---T---G---TTTTAACGTTAAGTC--T-CATTATTGAATTGT--AATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-G-CCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
gi|20 : TAACTTTGAGTAAAAGAAATAATTGGA------TATGTTGTCCT-AATT---GATATACAATAA--TTT--AT-CAAA-CATACCGTGTGAAATATACAG------TAGTTAGCCATAAATATATC
gi|21 : TGCTAA-----CT---AATCATACCATAAATACCAAGAA--ATACAGTGTA-TGTATAAATG--C--ATGGT--TAAGAA-AT-AA-CACAATTA-CCT--T--GAAAATC---A---GAGATTTTAAC
gi|22 : TAATTGTGCTTATCGGTGAGTAT--TCTTCTTTTGACA--------TGTATATTTTGAAATATAAATGTGCGAAAAATCTATGACAAC-GAAAAAAA
gi|23 : TTTCACAAAACGGACTACATTTGCACCCAATGA-------AATTTAGGACTTAAATGT-AGG-CCTGCTC
gi|26 : --TTTT--CAGTAGACTAAGTA-GT-ATGCTTCATTTACA
gi|3 : AGGCG-TAAGCTA-AGTCGGGC-TT-AAAATCAGGA---CTAAGTCATAAAAT----CGGACTAAGATGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGTCTTAAAGTT-AGGCC-TGCTCATGACTA-GGCGT-----------------------AAC----------ATTGGCGATGATGTTGCTTAT-ATAAGCATAATTATGTAATTATGCTTATCGACAACTAT--TCCTCGTTTTACACGTA--------TATTTTGAAATATAAATAAGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCG-----GGCATA-CTTTTG-CAGCTTTTATATGT------ACCCCCA---CCCACTCT-TCTTTTT--CAGTAGACTAAGTA-TT-ATGTTTCATTTACAAGATAACTTTGAGTTAAAGAGATAATTAGA------TATCTTGTCGT-AATT---GATAAACATTAAGTTTT--AT-CTAA-CATACAGAGTCATATACACAGTA----TAGTTAACCATAAGTATATCCCCGG-GAACTTTTCTTT-TATGTCAAAATCGATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----GGATT-----AA--ATACAATGTA-TATAGAAATG--C--ATGGCCCTGAACATAC-AT-TACAGTTT-CTT--A--AAAAATC---T---G---TTTTAATGTTAA-TC--TGCATTATGT-ATTGT-AAATTTGTAA--ATAATGACT-GAGTCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CCTAAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TC-AATA-TAAAAAAAT------------TTTT----------------AATC-TG-CATAAAGTg
gi|4 : ttcacaaaaaggtTA-GGCGTA----ACTCTTAGTCTGTGAA-CAGCTAAATG-GCTATTGGCGATGATGTTGCTTAT-ATA-GCATA----TCTAATTATGCTTATTGGTAACTAT--TCCTCGTTTTACACGTACAC--GTATATTTTGAAATATAAA--TGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAGGATG-A--T----AT-CATACCGACTTAAGCGTC--TTTTG-CATCTTGTATATGT-----TACCCCCC---CCC---CTCT--TTTT--CAATAGACTGAGTATAC-ATGCTTCATTTACAGGTAAACTTTGAGTAAACGAAATAATTGGA------TATCTTGTCCT-AATT---GATATACAATAAGTTTT--AT-CAAACCATACCTTGTCAAATATACAAC-----TAG-TAGCCA-AAATATATCCCGGG-AACCCTTTTTTTAAATGTCAAAATCGATTGAATTGTTTTAAAAGTTACTAA-----CT---AATCAGG----AAATA-----AA--ATA-AATGTA-TGTAGAACTGATCGAATGGCCCTGAAAATAC-AT-TACAGTTT-CTTAAA--AAAAATC---T---G---TTTTAACGTGAAGTCTATACATTATGTAATTGT-AAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT---CTA---CC--CG-AAAAATTC-ATA--TCAG-A--------ATATA-TA-ATTCCTA-TCAAATA-T-----AAC------------TTTTTTTAA-------AAAAAATC-TG-CTTAAAGT
gi|5 : AGACTAAGTA-ATCATGTTTCATTTACAAGTTAGCTTTGAGTAAAAGAAATAATTGGA------TATCT-----------------AAACAATGAGTTTG--AT-CAAA-CATGCATTTTCAAAAATGCAGTAGGCCTAGTTAGCCATCAGTATATTCCCGG-GAACCTTTTTTT-TTTTTCATAATCTAC---ATTTCATTAAAAACAGCTA
gi|5 : TTTT-AATGTCAAAATCTATTGAATTCTT----GAGCTGTTAG-----CT---TATTATA----AAATG-----AA---TACAATGTA-TGTAAAAATG--C--ATGGTCCTGAAAA----AC-TCTAGTTT-CTT--T--GAAAATC---TCAGA---TTTTAACATTAAGTC----------------GTAAAG-TTGTAA--ATAGTGACT-GAATCA-----A-ATG-ATT-ACACCCCCT-CCTTAATTCCTACT-AAAAATCC-ATA--TCAGAAATATCTACATATA-TA-ATTCCTA-TC-AATA-T----AAAC-------------TTT----A-------AAAAAATC--A-TTAAAAGTttttgctgtagttttaatgtcaaaatctattgaattcttgagctgttagcttattataaaatgaatacaatgtatgtaaaaatgcatggtcctgaaaaactctagtttctttgaaaatctcagattttaacattaagtcgtaaagttgtaaatagtgactgaatcaaatgattacaccccctccttaattcctactaaaaatccatatcagaaatatctacatatataattcctatcaatataaactttaaaaaaatcattaaaagtggaaatcattgcatgaatttattgtaaacataatataaggtcacacggggcct
gi|6 : agactaagtaatcatgtttcatttacaagttagctttgagtaaaagaaataattggatatctaaacaatgagtttgatcaaacatgcattttcaaaaatgcagtaggcctagttagccatcagtatattcccgggaaccttttttttttttcataatctacatttcattaaaaacagctattttgctgtagTGGA------TATCTTGTCCT-AATG---AATAAACAATATTTTTTTTAT-CAAA-CATACACTGTCAAATATACAGTA------GTTAGCCATAAGTATATCCCGGG-AAACATTTTA---AATGTCAAAATCTATTGAATTGTTTTAAAATTTGCTAG-----CT---AATCGTG----AAATA-----AA--ATACAATGTA-TGTACAACTG--C--ATGGTCCTG-AAATACTATGTACAGTTT-CTT--T--AAAAATC---TCACA---TTTTAGCGTTAAGTC--TACATTATTTA----------TTGTAA--ATTATGACT-GAATTATCT--ATATG---T-GCCCCC-CC-CCCCA--TTT--CC-TACAAACC-ATAAGTAAGAAG-------ATATT-TATAGTCCTATTCAGATATT----AAACTATAATTTCTTTTTTT----A-------GATAAATTGTGACTTAAAGggaaatcattgcatgaatttattgtaaacataatataaggtcacacggggcct
gi|7 : AAAAT----CGGACTAAGATGCGTTTCACTAAACAGACTACATTTGCTCCCAACTT-------AATTCATGACTTAAAATTTAGGCC-TGCT-------------TA----ACTCGTAGTTTGTAAA-CAATTAAAAG-GTTTATGGCGATGATGTTGCTTAT-ATAAGC--------CTAATAAT----ATC--TAATTATACTCCTCGTTTTGCACGT------GTATATTT-GAAATATACAAGTGT--AATTTCTATGAGAATGGGGAAAAAA-TAGCTAACTC-TTTAAAAGATGTA--TGCAAAT-TATTCCG-----GGCGTC-TTTTGGATATCTTGGATATCT-----T
gi|8 : AACTAAATCGTTAACACAATAAA--TGCAAAT-CATTCCA-----GGACTCTTTTTTG-CTGCTCACACCTGT-----T--TTTCT---GTC---CT-T--TTTT--CAATCGGTTAAA-A-GT-GAGC------TATAAGTTAATTGTGA--AAAAGTTATATTTGGATACATGTATCTTGTCCTAAATTTAGAATAAACAATA--TTTT--TT-------------TATCAAATATACA--C----TAGGTAGCCATACTTGTACTTGCGG-AAACTTTTCTTT-g
gi|9 : aaaaaacaacaacaacaaAAAAGGCCTACG-ACCAGTCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTcacaatatatacatgtatgactcgtgtttcacttaaaacagcta
gi|9 : ggctttgtaggctgaaccgtaagctccaggggcccgtttcacaAT-ATA----TA----TCTAATTATGCTTATCGGTAACTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatatatctaattatgcttatcggtaacta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TGAAAATCATATGCACAATTGAATTAATTAAATTAGGTCACACAGGTCC
Unaligned ( gi|25 ): ACGGACCCCTGGACACACCAGAGGTGATGCATAGAACTCTTA
Alignments
lowQualScore : 1 1 111 1111 1111111 222 22222222222222222 1111 3333333 11111 22222 1111 111 111111 11 11111111 11111 11111 11 11111 22222222222 1111 1 11111 22222222 2 11111 4444444444444444444444444444
lowQualScore : 55 0 5 6 1 5 5 000 4 0 2222 1 6666666 99 2 5 000 44444444444444444 44 1 5 0 2 66666 2 6 0000 1 0 99 9999999 7 99 6 88 6 5 1 77 5 44444 5 1 5 22 44444 3333 111 6 77 77 66 5 0 2 222222 1 4 9999 77 00 4 4 99 1 88888888 0 5 6 4 1 0 11111 777 9999 11111 66 5 1 1 66 66 0 0 8 22 44444 55555555555 4 55 2 0000 7 22 55 4 77777 4 4 4 4 0 88 999 66 77 5 66 33333333 55 5 5 1 5 66666 0000000000000000000000000000 5 5
lowQualScore : .. . . . . . . ... . . .... . ....... .. . . ... ................. .. . . . . ..... . . .... . . .. ....... . .. . .. . . . .. . ..... . . . .. ..... .... ... . .. .. .. . . . ...... . . .... .. .. . . .. . ........ . . . . . . ..... ... .... ..... .. . . . .. .. . . . .. ..... ........... . .. . .... . .. .. . ..... . . . . . .. ... .. .. . .. ........ .. . . . . ..... ............................ . .
lowQualScore : 00 0 0 7 4 7 7 000 2 7 1111 0 2222222 22 8 0 000 33333333333333333 22 4 0 5 8 44444 5 4 6666 4 7 22 5555555 8 22 7 88 6 4 7 99 7 33333 7 4 7 44 33333 5555 777 7 99 99 00 0 9 0 888888 9 4 6666 99 66 4 4 33 6 77777777 7 0 5 4 9 9 11111 888 4444 11111 11 0 0 0 99 99 8 8 0 99 66666 77777777777 6 55 4 1111 9 33 55 0 00000 0 0 0 0 7 33 888 11 88 0 99 11111111 55 0 0 6 0 99999 6666666666666666666666666666 0 0
consensus : AAGAGGCCTACG-ACCAGGCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAATCGTAAAAT----CGGACTAAGNTGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGGCTTAAANTT-AGGCCCTGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTAAA-CAACTAAANGGNTANTGGCGACGATGTTGCTTATATAAGCATA----TCTAATTATGCTTATCGGTAACTAT--TCCTCGTTTTACACGTAC---TGTATATTTTGAAATATAAAAGTGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCGTC-TTTTTG-CAGCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAN-T-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----AAATA-----AA--ATACAATGTA-TGTANAANTG--C--ATGGTCCTGAAAATAC-AT-TACAGTTTCTT--N--AAAAATC---T---G---TTTTAACGTTAAGTC--TACATTATTTAATTGTAAAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
Reference ( family-1542 ) : AAAAGGCCTACG-ACCAGGCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAATCGTAAAAT----CGGACTAAGNTGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGGCTTAAANTT-AGGCCCTGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTAAA-CAACTAAANGGNTANTGGCGACGATGTTGCTTATATAAGCATA----TCTAATTATGCTTATCGGTAACTAT--TCCTCGTTTTACACGTAC---TGTATATTTTGAAATATAAAAGTGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCGTC-TTTTTG-CAGCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAN-T-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----AAATA-----AA--ATACAATGTA-TGTANAANTG--C--ATGGTCCTGAAAATAC-AT-TACAGTTTCTT--N--AAAAATC---T---G---TTTTAACGTTAAGTC--TACATTATTTAATTGTAAAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
gi|1 : AAAAGGCCTATG-ACGAGGCGAGAAGT---AGTCGGGTTGTTAAAAACAGGAGGACTAG-TCATGAAAT----CGGACTAAGATGCGTTTCACGAAACAGACTACATTTGCACCAAACTA-------AATC-ATGACTTAAAATT-AG--CCTGC------CTA-G----------CTCGCAGT-TGTAAAATAGTTATAAGTATTATGGCGATGATGTTACTTTTATAAGCCTA----TCTAATTATACT----------------CCTCGTTTTACACG--C---TGTAG---TTGAAATATACAAGTGT--AATTTCTATGACAAT-GGGAAAAAAATAACAAACTC-TTAAAAAGATGTA--TGCAAATTCATTCCGG-----GCGTC-TTTCTG-C-GCTTGTACATGCATGTGTATCCCCTGCTCCT---CT-T--TTTTTTCAGTAGACCAAGTAT-T-ATGTTCCATTAACA-GATAACTCTGAG-AAAATAAATAATTGGA------TATCT-GTCCT-AAT----AATAAACAATATTTTTTT-ATTCAAA-T-TACACT-CCAAACATAC--------TAGTTAGCCATAAGTATATTCCCGGGAAACATTTT--T-AATGTCAAAATCTATTGAATTGTTTTTAAAATTGCTAG-----CT---AATCGTG-----AATA-----AA--ATACAATGTATTGTACAACTG--C--ATTGTCGTG-AAATACTATGTACAGTTTTCT--T--AAAAATC------------TTCCAC----AG-C--TACATTATTTTATTGT-CAATT----A--AT-ATGACT-GAATCA-----G-ATG-A-T-GCCCCCACCACCCCT--TCC--CC---AAATCC-ATA--TAAAAA--------ATATT-TA-ATTCCTA-TC-AATA-T----AAACTTTT--------TTTT----T-------TAAAATTG-TG-CTTAAAGT
gi|10 : ttcacaTGTTGAACTCTT----AAGCTACTAGATACACTTGTAATCATA----AAATA-----CATTGTACAATGTT-TGTAAAAATG--C--TTGATCCT-AAAATA--A--TATAGTTTCCT--T--GAAAATCTCAT---A---TTTT--------GTT--TA---TATTGAAACGT-AAACTTATCA--ATAATGACT-GAATCA-----A-TTA-A-T---------------------------AATATTA-ATA--TCAGAA--------ATATC-TA-ATTTATA-TC------------AAC------------TTCC----A-------AAAAATTC-TG-CTTAAAGTgaaaatcattgcatgaattaataaaataaggccacatcg
gi|11 : acggaccccgggacacaccagaggAACTATAACCAGGC-GT-AAA--CAGGA---CTACATCGTAAAAT----GAGACGAAGTTGCGTTTCATAAAACAA--TACATTTACAACCGACTATGACTTTAATCTATAGC-------T-AGG-CCTGCTCATGATTACAGTATATTTGAGTCTTCGTCTGTAAC-CAACTAAACGAATAATGGCAAC---GTTTCTTATAAAAGCATG----TCTAATTTTGCggaattcattgcatatatctaaatataagtctacct
gi|12 : tttcacaaaaagG-TAAGCTT-AGTCGGGC-GC-AAAAACAGGA---CTAAATCGTAAATTGGTTCGG-CTAAGTTGCGTTTCATAAAACAGACTACATTTGCACCCCACTA-------AAT-GATGGCTTAAACTT-AGG-CCTGCTCATGATTA-GGTGTA----AGTTAAAGTCTGTAAA-CAACTGAAGGGT-------GACGATGTTG-TTA---AAGCATA----TCTAATTattttcctaaactcattct
gi|13 : tttcacaagcggtgtacgaaAAGAGGCAAACA-ATCAG-CT-TAAA-TATATCCGGGC-GT-TAAAATAGGA---CTGAATCATAAGGT----CGAACTAAGTTGCGTTTTGTAAAACAGACCACAATTGCACCCGACTA-------AATACATGGCTTCAATGT-AGG-CCTGCTCATG-----------------TCTCAGTCTGTAAA-TAACTAAAAGAATAATGGCGAC-ATGTTGCTTATGGAAGCAt
gi|14 : tttcacAGTTTGCT--T--AAAAATC---T---G---TTTTAACGT-AAGTC--TACATTATGTAATTGTAAATTGTGTAA--ATAATGACTGGAATCA-----A-ATG-A-TCGCCCCCACT--CCCA--CCT--CC-AAAAATTCAATA--TCAGAA--------ATATATTA-ATTCCTA-TC-AATA-T------AC------------TTTA----AAAAAAATAAAAAATC-TG-CTTAAAGT
gi|15 : CTGAAATTAC-A----CA--TTCTT--AGTACAAGGC---GA--G---TTT--ATGTCATGTT--TTTGTTATGT--TTG-AAAAGCTGCAA--A-AATGACT-GAAACATAAACA-ATGGA-T-GTCCCTACC-CCGCA--CCC--CC-
gi|16 : CAGTCACAAGTTAACTTTTAGCAAAAGAAATAATAGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATAC--------ATATACA-TA----TA---AG-TATAAGTATATCca
gi|17 : tctggcAACTCATTTAAAAGATGTACATGCAAAT-CATTCTGG-----GCGTC-TTTTTG-CAGCTTGTATATGTATG--TACCCC-----CCT---CT-T--TTTT--CAGTCGACTAAGTAT-T-ATGTTTCATTTACAAGTg
gi|18 : AGTGTCAAATATACAGTA------ATTAGTCATAGGTATATCCCCGG-AAAC-TTTATTA-AATGTCAAAATATATTAAATTGTTTTGA--GTTACTAG-----CT---AATCATG----AAATA-----AA--ATACA
gi|19 : CCTGAAAATAC-AT-TACAGTTTCTT--A--AGAAATC---T---G---TTTTAACGTTAAGCC--TACATGA-TGAATTGTAAATTTTATAAATATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCAC
gi|2 : AAGAGG--TACGGACCAGGCG-TA-GCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAGTCA-AAAAT----CGGACTAAGATGCGTTTCACAAAGCAGACTACATT-GCACCCGACTA-------AATTTATGGCTTAAATTT-AGGC--TGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTGAA-CAGTTATCCGGTTATTGGCGATGATGTTGCTTATA--AGCATA----TCTAATTATGATTATCGGTAACTAT--TCCTCGTTTTACACGTATACATGTATATTTTGAAATATAAAAATGT--AATTTCTATGAGAAT-GGGAAAAA--TAGCTAACTCGTT-AAAAGATGTA--TGCTAAT-CATCCCGG-----GCGTC-TTTTTG-CATCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAG-T-ATGCTTCATTTACAGGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATATACAATAAATTTT--AT-CAAA-CATACCGTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AACCCTTTTTTT-AATGTCAAAATCGATTGAATTGTTTTAAAAGTTGCTAA-----CT---AATCAGG----AAATA-----AA--ATAAAATGTA-TGTAGAACTG--C--ATGGCCCTGAAAATAC-AT-TACAGTTTCTTA-A--AAAAATC---T---G---TTTTAACGTTAAGTC--T-CATTATTGAATTGT--AATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-G-CCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
gi|20 : TAACTTTGAGTAAAAGAAATAATTGGA------TATGTTGTCCT-AATT---GATATACAATAA--TTT--AT-CAAA-CATACCGTGTGAAATATACAG------TAGTTAGCCATAAATATATC
gi|21 : TGCTAA-----CT---AATCATACCATAAATACCAAGAA--ATACAGTGTA-TGTATAAATG--C--ATGGT--TAAGAA-AT-AA-CACAATTACCT--T--GAAAATC---A---GAGATTTTAAC
gi|22 : TAATTGTGCTTATCGGTGAGTAT--TCTTCTTTTGACA--------TGTATATTTTGAAATATAAATGTGCGAAAAATCTATGACAAC-GAAAAAAA
gi|23 : TTTCACAAAACGGACTACATTTGCACCCAATGA-------AATTTAGGACTTAAATGT-AGG-CCTGCTC
gi|26 : --TTTT--CAGTAGACTAAGTAG-T-ATGCTTCATTTACA
gi|3 : AGGCG-TAAGCTA-AGTCGGGC-TT-AAAATCAGGA---CTAAGTCATAAAAT----CGGACTAAGATGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGTCTTAAAGTT-AGGCC-TGCTCATGACTA-GGCGT-----------------------AAC---------ATTGGCGATGATGTTGCTTATATAAGCATAATTATGTAATTATGCTTATCGACAACTAT--TCCTCGTTTTACACGTA--------TATTTTGAAATATAAATAAGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCATA-CTTTTG-CAGCTTTTATATGT------ACCCCCA---CCCACTCT-TCTTTTT--CAGTAGACTAAGTAT-T-ATGTTTCATTTACAAGATAACTTTGAGTTAAAGAGATAATTAGA------TATCTTGTCGT-AATT---GATAAACATTAAGTTTT--AT-CTAA-CATACAGAGTCATATACACAGTA----TAGTTAACCATAAGTATATCCCCGG-GAACTTTTCTTT-TATGTCAAAATCGATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----GGATT-----AA--ATACAATGTA-TATAGAAATG--C--ATGGCCCTGAACATAC-AT-TACAGTTTCTT--A--AAAAATC---T---G---TTTTAATGTTAA-TC--TGCATTATGT-ATTGT-AAATTTGTAA--ATAATGACT-GAGTCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CCTAAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TC-AATA-TAAAAAAAT------------TTTT----------------AATC-TG-CATAAAGTg
gi|4 : ttcacaaaaaggtTA-GGCGTA----ACTCTTAGTCTGTGAA-CAGCTAAATGGCTATTGGCGATGATGTTGCTTATATA-GCATA----TCTAATTATGCTTATTGGTAACTAT--TCCTCGTTTTACACGTACA--CGTATATTTTGAAATATAAA--TGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAGGATG-A--T----AT-CATACCGACTTAAGCGTC-TTTT-G-CATCTTGTATATGT-----TACCCCCC---CCC---CTCT--TTTT--CAATAGACTGAGTATAC-ATGCTTCATTTACAGGTAAACTTTGAGTAAACGAAATAATTGGA------TATCTTGTCCT-AATT---GATATACAATAAGTTTT--AT-CAAACCATACCTTGTCAAATATACAAC-----TAG-TAGCCA-AAATATATCCCGGG-AACCCTTTTTTTAAATGTCAAAATCGATTGAATTGTTTTAAAAGTTACTAA-----CT---AATCAGG----AAATA-----AA--ATA-AATGTA-TGTAGAACTGATCGAATGGCCCTGAAAATAC-AT-TACAGTTTCTTAAA--AAAAATC---T---G---TTTTAACGTGAAGTCTATACATTATGTAATTGT-AAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT---CTA---CC--CG-AAAAATTC-ATA--TCAG-A--------ATATA-TA-ATTCCTA-TCAAATA-T-----AAC------------TTTTTTTAA-------AAAAAATC-TG-CTTAAAGT
gi|5 : AGACTAAGTAA-TCATGTTTCATTTACAAGTTAGCTTTGAGTAAAAGAAATAATTGGA------TATCT-----------------AAACAATGAGTTTG--AT-CAAA-CATGCATTTTCAAAAATGCAGTAGGCCTAGTTAGCCATCAGTATATTCCCGG-GAACCTTTTTTT-TTTTTCATAATCTAC---ATTTCATTAAAAACAGCTA
gi|5 : TTTT-AATGTCAAAATCTATTGAATTCTT----GAGCTGTTAG-----CT---TATTATA----AAATG-----AA---TACAATGTA-TGTAAAAATG--C--ATGGTCCTGAAAA----AC-TCTAGTTTCTT--T--GAAAATC---TCAGA---TTTTAACATTAAGTC----------------GTAAAG-TTGTAA--ATAGTGACT-GAATCA-----A-ATG-ATT-ACACCCCCT-CCTTAATTCCTACT-AAAAATCC-ATA--TCAGAAATATCTACATATA-TA-ATTCCTA-TC-AATA-T----AAAC-------------TTT----A-------AAAAAATC--A-TTAAAAGTttttgctgtagttttaatgtcaaaatctattgaattcttgagctgttagcttattataaaatgaatacaatgtatgtaaaaatgcatggtcctgaaaaactctagtttctttgaaaatctcagattttaacattaagtcgtaaagttgtaaatagtgactgaatcaaatgattacaccccctccttaattcctactaaaaatccatatcagaaatatctacatatataattcctatcaatataaactttaaaaaaatcattaaaagtggaaatcattgcatgaatttattgtaaacataatataaggtcacacggggcct
gi|6 : agactaagtaatcatgtttcatttacaagttagctttgagtaaaagaaataattggatatctaaacaatgagtttgatcaaacatgcattttcaaaaatgcagtaggcctagttagccatcagtatattcccgggaaccttttttttttttcataatctacatttcattaaaaacagctattttgctgtagTGGA------TATCTTGTCCT-AATG---AATAAACAATATTTTTTTTAT-CAAA-CATACACTGTCAAATATACAGTA------GTTAGCCATAAGTATATCCCGGG-AAACATTTTA---AATGTCAAAATCTATTGAATTGTTTTAAAATTTGCTAG-----CT---AATCGTG----AAATA-----AA--ATACAATGTA-TGTACAACTG--C--ATGGTCCTG-AAATACTATGTACAGTTTCTT--T--AAAAATC---TCACA---TTTTAGCGTTAAGTC--TACATTATTTA----------TTGTAA--ATTATGACT-GAATTATCT--ATATG---T-GCCCCC-CC-CCCCA--TTT--CC-TACAAACC-ATAAGTAAGAAG-------ATATT-TATAGTCCTATTCAGATATT----AAACTATAATTTCTTTTTTT----A-------GATAAATTGTGACTTAAAGggaaatcattgcatgaatttattgtaaacataatataaggtcacacggggcct
gi|7 : AAAAT----CGGACTAAGATGCGTTTCACTAAACAGACTACATTTGCTCCCAACTT-------AATTCATGACTTAAAATTTAGGCC-TGCT-------------TA----ACTCGTAGTTTGTAAA-CAATTAAAAGGTTTATGGCGATGATGTTGCTTATATAAGC--------CTAATAAT----ATC--TAATTATACTCCTCGTTTTGCACGT------GTATATTT-GAAATATACAAGTGT--AATTTCTATGAGAATGGGGAAAAAA-TAGCTAACTC-TTTAAAAGATGTA--TGCAAAT-TATTCCGG-----GCGTC-TTTTGGATATCTTGGATATCT-----T
gi|8 : AACTAAATCGTTAACACAATAAA--TGCAAAT-CATTCCAG-----GACTCTTTTTTG-CTGCTCACACCTGT-----T--TTTCT---GTC---CT-T--TTTT--CAATCGGTTAAA-AG-T-GAGC------TATAAGTTAATTGTGA--AAAAGTTATATTTGGATACATGTATCTTGTCCTAAATTTAGAATAAACAATA--TTTT--TT-------------TATCAAATATACA--C----TAGGTAGCCATACTTGTACTTGCGG-AAACTTTTCTTT-g
gi|9 : aaaaaacaacaacaacaaAAAAGGCCTACG-ACCAGTCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTcacaatatatacatgtatgactcgtgtttcacttaaaacagcta
gi|9 : ggctttgtaggctgaaccgtaagctccaggggcccgtttcacaATA----TCTAATTATGCTTATCGGTAACTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatatatctaattatgcttatcggtaacta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TGAAAATCATATGCACAATTGAATTAATTAAATTAGGTCACACAGGTCC
Unaligned ( gi|25 ): ACGGACCCCTGGACACACCAGAGGTGATGCATAGAACTCTTA
Alignments
lowQualScore : 1 1 111 1111 1111111 222 22222222222222222 1111 3333333 11111 22222 1111 111 111111 11 11111111 11111 11111 11 11111 22222222222 1111 1 11111 22222222 2 11111 4444444444444444444444444444
lowQualScore : 88 8 3 0 6 1 5 5 000 4 0 2222 1 6666666 99 2 5 000 44444444444444444 44 1 5 0 2 66666 2 6 0000 1 0 99 9999999 7 99 6 88 6 5 1 77 5 44444 5 1 5 22 44444 3333 111 6 77 77 66 5 0 2 222222 1 4 9999 77 00 4 4 99 1 88888888 0 5 6 4 1 0 11111 777 9999 11111 66 5 1 1 66 66 0 0 8 22 44444 55555555555 4 55 2 0000 7 22 55 4 77777 4 4 4 4 0 88 999 66 77 5 66 33333333 55 5 5 1 5 66666 0000000000000000000000000000 5 5
lowQualScore : .. . . . . . . . ... . . .... . ....... .. . . ... ................. .. . . . . ..... . . .... . . .. ....... . .. . .. . . . .. . ..... . . . .. ..... .... ... . .. .. .. . . . ...... . . .... .. .. . . .. . ........ . . . . . . ..... ... .... ..... .. . . . .. .. . . . .. ..... ........... . .. . .... . .. .. . ..... . . . . . .. ... .. .. . .. ........ .. . . . . ..... ............................ . .
lowQualScore : 22 0 2 8 7 4 7 7 000 2 7 1111 0 2222222 22 8 0 000 33333333333333333 22 4 0 5 8 44444 5 4 6666 4 7 22 5555555 8 22 7 88 6 4 7 99 7 33333 7 4 7 44 33333 5555 777 7 99 99 00 0 9 0 888888 9 4 6666 99 66 4 4 33 6 77777777 7 0 5 4 9 9 11111 888 4444 11111 11 0 0 0 99 99 8 8 0 99 66666 77777777777 6 55 4 1111 9 33 55 0 00000 0 0 0 0 7 33 888 11 88 0 99 11111111 55 0 0 6 0 99999 6666666666666666666666666666 0 0
consensus : AAGAGGCNTACG-ACCAGGCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAATCGTAAAAT----CGGACTAAGNTGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGGCTTAAANTT-AGGCCCTGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTAAA-CAACTAAANGGNTANTGGCGACGATGTTGCTTATATAAGCATA----TCTAATTATGCTTATCGGTAACTAT--TCCTCGTTTTACACGTAC---TGTATATTTTGAAATATAAAAGTGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCGTC-TTTTTG-CAGCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAN-T-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----AAATA-----AA--ATACAATGTA-TGTANAANTG--C--ATGGTCCTGAAAATAC-AT-TACAGTTTCTT--N--AAAAATC---T---G---TTTTAACGTTAAGTC--TACATTATTTAATTGTAAAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
Reference ( family-1542 ) : AAGAGGCCTACG-ACCAGGCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAATCGTAAAAT----CGGACTAAGNTGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGGCTTAAANTT-AGGCCCTGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTAAA-CAACTAAANGGNTANTGGCGACGATGTTGCTTATATAAGCATA----TCTAATTATGCTTATCGGTAACTAT--TCCTCGTTTTACACGTAC---TGTATATTTTGAAATATAAAAGTGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCGTC-TTTTTG-CAGCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAN-T-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----AAATA-----AA--ATACAATGTA-TGTANAANTG--C--ATGGTCCTGAAAATAC-AT-TACAGTTTCTT--N--AAAAATC---T---G---TTTTAACGTTAAGTC--TACATTATTTAATTGTAAAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
gi|1 : AAAAGGCCTATG-ACGAGGCGAGAAGT---AGTCGGGTTGTTAAAAACAGGAGGACTAG-TCATGAAAT----CGGACTAAGATGCGTTTCACGAAACAGACTACATTTGCACCAAACTA-------AATC-ATGACTTAAAATT-AG--CCTGC------CTA-G----------CTCGCAGT-TGTAAAATAGTTATAAGTATTATGGCGATGATGTTACTTTTATAAGCCTA----TCTAATTATACT----------------CCTCGTTTTACACG--C---TGTAG---TTGAAATATACAAGTGT--AATTTCTATGACAAT-GGGAAAAAAATAACAAACTC-TTAAAAAGATGTA--TGCAAATTCATTCCGG-----GCGTC-TTTCTG-C-GCTTGTACATGCATGTGTATCCCCTGCTCCT---CT-T--TTTTTTCAGTAGACCAAGTAT-T-ATGTTCCATTAACA-GATAACTCTGAG-AAAATAAATAATTGGA------TATCT-GTCCT-AAT----AATAAACAATATTTTTTT-ATTCAAA-T-TACACT-CCAAACATAC--------TAGTTAGCCATAAGTATATTCCCGGGAAACATTTT--T-AATGTCAAAATCTATTGAATTGTTTTTAAAATTGCTAG-----CT---AATCGTG-----AATA-----AA--ATACAATGTATTGTACAACTG--C--ATTGTCGTG-AAATACTATGTACAGTTTTCT--T--AAAAATC------------TTCCAC----AG-C--TACATTATTTTATTGT-CAATT----A--AT-ATGACT-GAATCA-----G-ATG-A-T-GCCCCCACCACCCCT--TCC--CC---AAATCC-ATA--TAAAAA--------ATATT-TA-ATTCCTA-TC-AATA-T----AAACTTTT--------TTTT----T-------TAAAATTG-TG-CTTAAAGT
gi|10 : ttcacaTGTTGAACTCTT----AAGCTACTAGATACACTTGTAATCATA----AAATA-----CATTGTACAATGTT-TGTAAAAATG--C--TTGATCCT-AAAATA--A--TATAGTTTCCT--T--GAAAATCTCAT---A---TTTT--------GTT--TA---TATTGAAACGT-AAACTTATCA--ATAATGACT-GAATCA-----A-TTA-A-T---------------------------AATATTA-ATA--TCAGAA--------ATATC-TA-ATTTATA-TC------------AAC------------TTCC----A-------AAAAATTC-TG-CTTAAAGTgaaaatcattgcatgaattaataaaataaggccacatcg
gi|11 : acggaccccgggacacaccagaggAACTATAACCAGGC-GT-AAA--CAGGA---CTACATCGTAAAAT----GAGACGAAGTTGCGTTTCATAAAACAA--TACATTTACAACCGACTATGACTTTAATCTATAGC-------T-AGG-CCTGCTCATGATTACAGTATATTTGAGTCTTCGTCTGTAAC-CAACTAAACGAATAATGGCAAC---GTTTCTTATAAAAGCATG----TCTAATTTTGCggaattcattgcatatatctaaatataagtctacct
gi|12 : tttcacaaaaagAAGCGGTGTACG-A--AG----TAAGCTT-AGTCGGGC-GC-AAAAACAGGA---CTAAATCGTAAATTGGTTCGG-CTAAGTTGCGTTTCATAAAACAGACTACATTTGCACCCCACTA-------AAT-GATGGCTTAAACTT-AGG-CCTGCTCATGATTA-GGTGTA----AGTTAAAGTCTGTAAA-CAACTGAAGGGT-------GACGATGTTG-TTA---AAGCATA----TCTAATTattttcctaaactcattct
gi|13 : tttcacAAGAGGCAAACA-ATCAG-CT-TAAA-TATATCCGGGC-GT-TAAAATAGGA---CTGAATCATAAGGT----CGAACTAAGTTGCGTTTTGTAAAACAGACCACAATTGCACCCGACTA-------AATACATGGCTTCAATGT-AGG-CCTGCTCATG-----------------TCTCAGTCTGTAAA-TAACTAAAAGAATAATGGCGAC-ATGTTGCTTATGGAAGCAt
gi|14 : tttcacAGTTTGCT--T--AAAAATC---T---G---TTTTAACGT-AAGTC--TACATTATGTAATTGTAAATTGTGTAA--ATAATGACTGGAATCA-----A-ATG-A-TCGCCCCCACT--CCCA--CCT--CC-AAAAATTCAATA--TCAGAA--------ATATATTA-ATTCCTA-TC-AATA-T------AC------------TTTA----AAAAAAATAAAAAATC-TG-CTTAAAGT
gi|15 : CTGAAATTAC-A----CA--TTCTT--AGTACAAGGC---GA--G---TTT--ATGTCATGTT--TTTGTTATGT--TTG-AAAAGCTGCAA--A-AATGACT-GAAACATAAACA-ATGGA-T-GTCCCTACC-CCGCA--CCC--CC-
gi|16 : CAGTCACAAGTTAACTTTTAGCAAAAGAAATAATAGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATAC--------ATATACA-TA----TA---AG-TATAAGTATATCca
gi|17 : tctggcAACTCATTTAAAAGATGTACATGCAAAT-CATTCTGG-----GCGTC-TTTTTG-CAGCTTGTATATGTATG--TACCCC-----CCT---CT-T--TTTT--CAGTCGACTAAGTAT-T-ATGTTTCATTTACAAGTg
gi|18 : AGTGTCAAATATACAGTA------ATTAGTCATAGGTATATCCCCGG-AAAC-TTTATTA-AATGTCAAAATATATTAAATTGTTTTGA--GTTACTAG-----CT---AATCATG----AAATA-----AA--ATACA
gi|19 : CCTGAAAATAC-AT-TACAGTTTCTT--A--AGAAATC---T---G---TTTTAACGTTAAGCC--TACATGA-TGAATTGTAAATTTTATAAATATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCAC
gi|2 : AAGAGG--TACGGACCAGGCG-TA-GCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAGTCA-AAAAT----CGGACTAAGATGCGTTTCACAAAGCAGACTACATT-GCACCCGACTA-------AATTTATGGCTTAAATTT-AGGC--TGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTGAA-CAGTTATCCGGTTATTGGCGATGATGTTGCTTATA--AGCATA----TCTAATTATGATTATCGGTAACTAT--TCCTCGTTTTACACGTATACATGTATATTTTGAAATATAAAAATGT--AATTTCTATGAGAAT-GGGAAAAA--TAGCTAACTCGTT-AAAAGATGTA--TGCTAAT-CATCCCGG-----GCGTC-TTTTTG-CATCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAG-T-ATGCTTCATTTACAGGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATATACAATAAATTTT--AT-CAAA-CATACCGTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AACCCTTTTTTT-AATGTCAAAATCGATTGAATTGTTTTAAAAGTTGCTAA-----CT---AATCAGG----AAATA-----AA--ATAAAATGTA-TGTAGAACTG--C--ATGGCCCTGAAAATAC-AT-TACAGTTTCTTA-A--AAAAATC---T---G---TTTTAACGTTAAGTC--T-CATTATTGAATTGT--AATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-G-CCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
gi|20 : TAACTTTGAGTAAAAGAAATAATTGGA------TATGTTGTCCT-AATT---GATATACAATAA--TTT--AT-CAAA-CATACCGTGTGAAATATACAG------TAGTTAGCCATAAATATATC
gi|21 : TGCTAA-----CT---AATCATACCATAAATACCAAGAA--ATACAGTGTA-TGTATAAATG--C--ATGGT--TAAGAA-AT-AA-CACAATTACCT--T--GAAAATC---A---GAGATTTTAAC
gi|22 : TAATTGTGCTTATCGGTGAGTAT--TCTTCTTTTGACA--------TGTATATTTTGAAATATAAATGTGCGAAAAATCTATGACAAC-GAAAAAAA
gi|23 : TTTCACAAAACGGACTACATTTGCACCCAATGA-------AATTTAGGACTTAAATGT-AGG-CCTGCTC
gi|26 : --TTTT--CAGTAGACTAAGTAG-T-ATGCTTCATTTACA
gi|3 : AGGCG-TAAGCTA-AGTCGGGC-TT-AAAATCAGGA---CTAAGTCATAAAAT----CGGACTAAGATGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGTCTTAAAGTT-AGGCC-TGCTCATGACTA-GGCGT-----------------------AAC---------ATTGGCGATGATGTTGCTTATATAAGCATAATTATGTAATTATGCTTATCGACAACTAT--TCCTCGTTTTACACGTA--------TATTTTGAAATATAAATAAGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCATA-CTTTTG-CAGCTTTTATATGT------ACCCCCA---CCCACTCT-TCTTTTT--CAGTAGACTAAGTAT-T-ATGTTTCATTTACAAGATAACTTTGAGTTAAAGAGATAATTAGA------TATCTTGTCGT-AATT---GATAAACATTAAGTTTT--AT-CTAA-CATACAGAGTCATATACACAGTA----TAGTTAACCATAAGTATATCCCCGG-GAACTTTTCTTT-TATGTCAAAATCGATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----GGATT-----AA--ATACAATGTA-TATAGAAATG--C--ATGGCCCTGAACATAC-AT-TACAGTTTCTT--A--AAAAATC---T---G---TTTTAATGTTAA-TC--TGCATTATGT-ATTGT-AAATTTGTAA--ATAATGACT-GAGTCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CCTAAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TC-AATA-TAAAAAAAT------------TTTT----------------AATC-TG-CATAAAGTg
gi|4 : ttcacaaaaaggtTA-GGCGTA----ACTCTTAGTCTGTGAA-CAGCTAAATGGCTATTGGCGATGATGTTGCTTATATA-GCATA----TCTAATTATGCTTATTGGTAACTAT--TCCTCGTTTTACACGTACA--CGTATATTTTGAAATATAAA--TGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAGGATG-A--T----AT-CATACCGACTTAAGCGTC-TTTT-G-CATCTTGTATATGT-----TACCCCCC---CCC---CTCT--TTTT--CAATAGACTGAGTATAC-ATGCTTCATTTACAGGTAAACTTTGAGTAAACGAAATAATTGGA------TATCTTGTCCT-AATT---GATATACAATAAGTTTT--AT-CAAACCATACCTTGTCAAATATACAAC-----TAG-TAGCCA-AAATATATCCCGGG-AACCCTTTTTTTAAATGTCAAAATCGATTGAATTGTTTTAAAAGTTACTAA-----CT---AATCAGG----AAATA-----AA--ATA-AATGTA-TGTAGAACTGATCGAATGGCCCTGAAAATAC-AT-TACAGTTTCTTAAA--AAAAATC---T---G---TTTTAACGTGAAGTCTATACATTATGTAATTGT-AAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT---CTA---CC--CG-AAAAATTC-ATA--TCAG-A--------ATATA-TA-ATTCCTA-TCAAATA-T-----AAC------------TTTTTTTAA-------AAAAAATC-TG-CTTAAAGT
gi|5 : AGACTAAGTAA-TCATGTTTCATTTACAAGTTAGCTTTGAGTAAAAGAAATAATTGGA------TATCT-----------------AAACAATGAGTTTG--AT-CAAA-CATGCATTTTCAAAAATGCAGTAGGCCTAGTTAGCCATCAGTATATTCCCGG-GAACCTTTTTTT-TTTTTCATAATCTAC---ATTTCATTAAAAACAGCTA
gi|5 : TTTT-AATGTCAAAATCTATTGAATTCTT----GAGCTGTTAG-----CT---TATTATA----AAATG-----AA---TACAATGTA-TGTAAAAATG--C--ATGGTCCTGAAAA----AC-TCTAGTTTCTT--T--GAAAATC---TCAGA---TTTTAACATTAAGTC----------------GTAAAG-TTGTAA--ATAGTGACT-GAATCA-----A-ATG-ATT-ACACCCCCT-CCTTAATTCCTACT-AAAAATCC-ATA--TCAGAAATATCTACATATA-TA-ATTCCTA-TC-AATA-T----AAAC-------------TTT----A-------AAAAAATC--A-TTAAAAGTttttgctgtagttttaatgtcaaaatctattgaattcttgagctgttagcttattataaaatgaatacaatgtatgtaaaaatgcatggtcctgaaaaactctagtttctttgaaaatctcagattttaacattaagtcgtaaagttgtaaatagtgactgaatcaaatgattacaccccctccttaattcctactaaaaatccatatcagaaatatctacatatataattcctatcaatataaactttaaaaaaatcattaaaagtggaaatcattgcatgaatttattgtaaacataatataaggtcacacggggcct
gi|6 : agactaagtaatcatgtttcatttacaagttagctttgagtaaaagaaataattggatatctaaacaatgagtttgatcaaacatgcattttcaaaaatgcagtaggcctagttagccatcagtatattcccgggaaccttttttttttttcataatctacatttcattaaaaacagctattttgctgtagTGGA------TATCTTGTCCT-AATG---AATAAACAATATTTTTTTTAT-CAAA-CATACACTGTCAAATATACAGTA------GTTAGCCATAAGTATATCCCGGG-AAACATTTTA---AATGTCAAAATCTATTGAATTGTTTTAAAATTTGCTAG-----CT---AATCGTG----AAATA-----AA--ATACAATGTA-TGTACAACTG--C--ATGGTCCTG-AAATACTATGTACAGTTTCTT--T--AAAAATC---TCACA---TTTTAGCGTTAAGTC--TACATTATTTA----------TTGTAA--ATTATGACT-GAATTATCT--ATATG---T-GCCCCC-CC-CCCCA--TTT--CC-TACAAACC-ATAAGTAAGAAG-------ATATT-TATAGTCCTATTCAGATATT----AAACTATAATTTCTTTTTTT----A-------GATAAATTGTGACTTAAAGggaaatcattgcatgaatttattgtaaacataatataaggtcacacggggcct
gi|7 : AAAAT----CGGACTAAGATGCGTTTCACTAAACAGACTACATTTGCTCCCAACTT-------AATTCATGACTTAAAATTTAGGCC-TGCT-------------TA----ACTCGTAGTTTGTAAA-CAATTAAAAGGTTTATGGCGATGATGTTGCTTATATAAGC--------CTAATAAT----ATC--TAATTATACTCCTCGTTTTGCACGT------GTATATTT-GAAATATACAAGTGT--AATTTCTATGAGAATGGGGAAAAAA-TAGCTAACTC-TTTAAAAGATGTA--TGCAAAT-TATTCCGG-----GCGTC-TTTTGGATATCTTGGATATCT-----T
gi|8 : AACTAAATCGTTAACACAATAAA--TGCAAAT-CATTCCAG-----GACTCTTTTTTG-CTGCTCACACCTGT-----T--TTTCT---GTC---CT-T--TTTT--CAATCGGTTAAA-AG-T-GAGC------TATAAGTTAATTGTGA--AAAAGTTATATTTGGATACATGTATCTTGTCCTAAATTTAGAATAAACAATA--TTTT--TT-------------TATCAAATATACA--C----TAGGTAGCCATACTTGTACTTGCGG-AAACTTTTCTTT-g
gi|9 : aaaaaacaacaacaacaaAAAAGGCCTACG-ACCAGTCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTcacaatatatacatgtatgactcgtgtttcacttaaaacagcta
gi|9 : ggctttgtaggctgaaccgtaagctccaggggcccgtttcacaATA----TCTAATTATGCTTATCGGTAACTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatatatctaattatgcttatcggtaacta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TGAAAATCATATGCACAATTGAATTAATTAAATTAGGTCACACAGGTCC
Unaligned ( gi|25 ): ACGGACCCCTGGACACACCAGAGGTGATGCATAGAACTCTTA
Alignments
lowQualScore : 1 1 111 1111 1111111 222 22222222222222222 1111 3333333 11111 22222 1111 111 111111 11 11111111 11111 11111 11 11111 22222222222 1111 1 11111 22222222 2 11111 4444444444444444444444444444
lowQualScore : 77 8 3 0 6 1 5 5 000 4 0 2222 1 6666666 99 2 5 000 44444444444444444 44 1 5 0 2 66666 2 6 0000 1 0 99 9999999 7 99 6 88 6 5 1 77 5 44444 5 1 5 22 44444 3333 111 6 77 77 66 5 0 2 222222 1 4 9999 77 00 4 4 99 1 88888888 0 5 6 4 1 0 11111 777 9999 11111 66 5 1 1 66 66 0 0 8 22 44444 55555555555 4 55 2 0000 7 22 55 4 77777 4 4 4 4 0 88 999 66 77 5 66 33333333 55 5 5 1 5 66666 0000000000000000000000000000 5 5
lowQualScore : .. . . . . . . . ... . . .... . ....... .. . . ... ................. .. . . . . ..... . . .... . . .. ....... . .. . .. . . . .. . ..... . . . .. ..... .... ... . .. .. .. . . . ...... . . .... .. .. . . .. . ........ . . . . . . ..... ... .... ..... .. . . . .. .. . . . .. ..... ........... . .. . .... . .. .. . ..... . . . . . .. ... .. .. . .. ........ .. . . . . ..... ............................ . .
lowQualScore : 00 0 2 8 7 4 7 7 000 2 7 1111 0 2222222 22 8 0 000 33333333333333333 22 4 0 5 8 44444 5 4 6666 4 7 22 5555555 8 22 7 88 6 4 7 99 7 33333 7 4 7 44 33333 5555 777 7 99 99 00 0 9 0 888888 9 4 6666 99 66 4 4 33 6 77777777 7 0 5 4 9 9 11111 888 4444 11111 11 0 0 0 99 99 8 8 0 99 66666 77777777777 6 55 4 1111 9 33 55 0 00000 0 0 0 0 7 33 888 11 88 0 99 11111111 55 0 0 6 0 99999 6666666666666666666666666666 0 0
consensus : AAGAGGCNTACG-ACCAGGCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAATCGTAAAAT----CGGACTAAGNTGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGGCTTAAANTT-AGGCCCTGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTAAA-CAACTAAANGGNTANTGGCGACGATGTTGCTTATATAAGCATA----TCTAATTATGCTTATCGGTAACTAT--TCCTCGTTTTACACGTAC---TGTATATTTTGAAATATAAAAGTGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCGTC-TTTTTG-CAGCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAN-T-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----AAATA-----AA--ATACAATGTA-TGTANAANTG--C--ATGGTCCTGAAAATAC-AT-TACAGTTTCTT--N--AAAAATC---T---G---TTTTAACGTTAAGTC--TACATTATTTAATTGTAAAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
Reference ( family-1542 ) : AAGAGGCNTACG-ACCAGGCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAATCGTAAAAT----CGGACTAAGNTGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGGCTTAAANTT-AGGCCCTGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTAAA-CAACTAAANGGNTANTGGCGACGATGTTGCTTATATAAGCATA----TCTAATTATGCTTATCGGTAACTAT--TCCTCGTTTTACACGTAC---TGTATATTTTGAAATATAAAAGTGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCGTC-TTTTTG-CAGCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAN-T-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----AAATA-----AA--ATACAATGTA-TGTANAANTG--C--ATGGTCCTGAAAATAC-AT-TACAGTTTCTT--N--AAAAATC---T---G---TTTTAACGTTAAGTC--TACATTATTTAATTGTAAAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
gi|1 : AAAAGGCCTATG-ACGAGGCGAGAAGT---AGTCGGGTTGTTAAAAACAGGAGGACTAG-TCATGAAAT----CGGACTAAGATGCGTTTCACGAAACAGACTACATTTGCACCAAACTA-------AATC-ATGACTTAAAATT-AG--CCTGC------CTA-G----------CTCGCAGT-TGTAAAATAGTTATAAGTATTATGGCGATGATGTTACTTTTATAAGCCTA----TCTAATTATACT----------------CCTCGTTTTACACG--C---TGTAG---TTGAAATATACAAGTGT--AATTTCTATGACAAT-GGGAAAAAAATAACAAACTC-TTAAAAAGATGTA--TGCAAATTCATTCCGG-----GCGTC-TTTCTG-C-GCTTGTACATGCATGTGTATCCCCTGCTCCT---CT-T--TTTTTTCAGTAGACCAAGTAT-T-ATGTTCCATTAACA-GATAACTCTGAG-AAAATAAATAATTGGA------TATCT-GTCCT-AAT----AATAAACAATATTTTTTT-ATTCAAA-T-TACACT-CCAAACATAC--------TAGTTAGCCATAAGTATATTCCCGGGAAACATTTT--T-AATGTCAAAATCTATTGAATTGTTTTTAAAATTGCTAG-----CT---AATCGTG-----AATA-----AA--ATACAATGTATTGTACAACTG--C--ATTGTCGTG-AAATACTATGTACAGTTTTCT--T--AAAAATC------------TTCCAC----AG-C--TACATTATTTTATTGT-CAATT----A--AT-ATGACT-GAATCA-----G-ATG-A-T-GCCCCCACCACCCCT--TCC--CC---AAATCC-ATA--TAAAAA--------ATATT-TA-ATTCCTA-TC-AATA-T----AAACTTTT--------TTTT----T-------TAAAATTG-TG-CTTAAAGT
gi|10 : ttcacaTGTTGAACTCTT----AAGCTACTAGATACACTTGTAATCATA----AAATA-----CATTGTACAATGTT-TGTAAAAATG--C--TTGATCCT-AAAATA--A--TATAGTTTCCT--T--GAAAATCTCAT---A---TTTT--------GTT--TA---TATTGAAACGT-AAACTTATCA--ATAATGACT-GAATCA-----A-TTA-A-T---------------------------AATATTA-ATA--TCAGAA--------ATATC-TA-ATTTATA-TC------------AAC------------TTCC----A-------AAAAATTC-TG-CTTAAAGTgaaaatcattgcatgaattaataaaataaggccacatcg
gi|11 : acggaccccgggacacaccagaggAACTATAACCAGGC-GT-AAA--CAGGA---CTACATCGTAAAAT----GAGACGAAGTTGCGTTTCATAAAACAA--TACATTTACAACCGACTATGACTTTAATCTATAGC-------T-AGG-CCTGCTCATGATTACAGTATATTTGAGTCTTCGTCTGTAAC-CAACTAAACGAATAATGGCAAC---GTTTCTTATAAAAGCATG----TCTAATTTTGCggaattcattgcatatatctaaatataagtctacct
gi|12 : tttcacaaaaagAAGCGGTGTACG-A--AG----TAAGCTT-AGTCGGGC-GC-AAAAACAGGA---CTAAATCGTAAATTGGTTCGG-CTAAGTTGCGTTTCATAAAACAGACTACATTTGCACCCCACTA-------AAT-GATGGCTTAAACTT-AGG-CCTGCTCATGATTA-GGTGTA----AGTTAAAGTCTGTAAA-CAACTGAAGGGT-------GACGATGTTG-TTA---AAGCATA----TCTAATTattttcctaaactcattct
gi|13 : tttcacAAGAGGCAAACA-ATCAG-CT-TAAA-TATATCCGGGC-GT-TAAAATAGGA---CTGAATCATAAGGT----CGAACTAAGTTGCGTTTTGTAAAACAGACCACAATTGCACCCGACTA-------AATACATGGCTTCAATGT-AGG-CCTGCTCATG-----------------TCTCAGTCTGTAAA-TAACTAAAAGAATAATGGCGAC-ATGTTGCTTATGGAAGCAt
gi|14 : tttcacAGTTTGCT--T--AAAAATC---T---G---TTTTAACGT-AAGTC--TACATTATGTAATTGTAAATTGTGTAA--ATAATGACTGGAATCA-----A-ATG-A-TCGCCCCCACT--CCCA--CCT--CC-AAAAATTCAATA--TCAGAA--------ATATATTA-ATTCCTA-TC-AATA-T------AC------------TTTA----AAAAAAATAAAAAATC-TG-CTTAAAGT
gi|15 : CTGAAATTAC-A----CA--TTCTT--AGTACAAGGC---GA--G---TTT--ATGTCATGTT--TTTGTTATGT--TTG-AAAAGCTGCAA--A-AATGACT-GAAACATAAACA-ATGGA-T-GTCCCTACC-CCGCA--CCC--CC-
gi|16 : CAGTCACAAGTTAACTTTTAGCAAAAGAAATAATAGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATAC--------ATATACA-TA----TA---AG-TATAAGTATATCca
gi|17 : tctggcAACTCATTTAAAAGATGTACATGCAAAT-CATTCTGG-----GCGTC-TTTTTG-CAGCTTGTATATGTATG--TACCCC-----CCT---CT-T--TTTT--CAGTCGACTAAGTAT-T-ATGTTTCATTTACAAGTg
gi|18 : AGTGTCAAATATACAGTA------ATTAGTCATAGGTATATCCCCGG-AAAC-TTTATTA-AATGTCAAAATATATTAAATTGTTTTGA--GTTACTAG-----CT---AATCATG----AAATA-----AA--ATACA
gi|19 : CCTGAAAATAC-AT-TACAGTTTCTT--A--AGAAATC---T---G---TTTTAACGTTAAGCC--TACATGA-TGAATTGTAAATTTTATAAATATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCAC
gi|2 : AAGAGG--TACGGACCAGGCG-TA-GCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAGTCA-AAAAT----CGGACTAAGATGCGTTTCACAAAGCAGACTACATT-GCACCCGACTA-------AATTTATGGCTTAAATTT-AGGC--TGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTGAA-CAGTTATCCGGTTATTGGCGATGATGTTGCTTATA--AGCATA----TCTAATTATGATTATCGGTAACTAT--TCCTCGTTTTACACGTATACATGTATATTTTGAAATATAAAAATGT--AATTTCTATGAGAAT-GGGAAAAA--TAGCTAACTCGTT-AAAAGATGTA--TGCTAAT-CATCCCGG-----GCGTC-TTTTTG-CATCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAG-T-ATGCTTCATTTACAGGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATATACAATAAATTTT--AT-CAAA-CATACCGTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AACCCTTTTTTT-AATGTCAAAATCGATTGAATTGTTTTAAAAGTTGCTAA-----CT---AATCAGG----AAATA-----AA--ATAAAATGTA-TGTAGAACTG--C--ATGGCCCTGAAAATAC-AT-TACAGTTTCTTA-A--AAAAATC---T---G---TTTTAACGTTAAGTC--T-CATTATTGAATTGT--AATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-G-CCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
gi|20 : TAACTTTGAGTAAAAGAAATAATTGGA------TATGTTGTCCT-AATT---GATATACAATAA--TTT--AT-CAAA-CATACCGTGTGAAATATACAG------TAGTTAGCCATAAATATATC
gi|21 : TGCTAA-----CT---AATCATACCATAAATACCAAGAA--ATACAGTGTA-TGTATAAATG--C--ATGGT--TAAGAA-AT-AA-CACAATTACCT--T--GAAAATC---A---GAGATTTTAAC
gi|22 : TAATTGTGCTTATCGGTGAGTAT--TCTTCTTTTGACA--------TGTATATTTTGAAATATAAATGTGCGAAAAATCTATGACAAC-GAAAAAAA
gi|23 : TTTCACAAAACGGACTACATTTGCACCCAATGA-------AATTTAGGACTTAAATGT-AGG-CCTGCTC
gi|26 : --TTTT--CAGTAGACTAAGTAG-T-ATGCTTCATTTACA
gi|3 : AGGCG-TAAGCTA-AGTCGGGC-TT-AAAATCAGGA---CTAAGTCATAAAAT----CGGACTAAGATGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGTCTTAAAGTT-AGGCC-TGCTCATGACTA-GGCGT-----------------------AAC---------ATTGGCGATGATGTTGCTTATATAAGCATAATTATGTAATTATGCTTATCGACAACTAT--TCCTCGTTTTACACGTA--------TATTTTGAAATATAAATAAGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCATA-CTTTTG-CAGCTTTTATATGT------ACCCCCA---CCCACTCT-TCTTTTT--CAGTAGACTAAGTAT-T-ATGTTTCATTTACAAGATAACTTTGAGTTAAAGAGATAATTAGA------TATCTTGTCGT-AATT---GATAAACATTAAGTTTT--AT-CTAA-CATACAGAGTCATATACACAGTA----TAGTTAACCATAAGTATATCCCCGG-GAACTTTTCTTT-TATGTCAAAATCGATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----GGATT-----AA--ATACAATGTA-TATAGAAATG--C--ATGGCCCTGAACATAC-AT-TACAGTTTCTT--A--AAAAATC---T---G---TTTTAATGTTAA-TC--TGCATTATGT-ATTGT-AAATTTGTAA--ATAATGACT-GAGTCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CCTAAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TC-AATA-TAAAAAAAT------------TTTT----------------AATC-TG-CATAAAGTg
gi|4 : ttcacaaaaaggtTA-GGCGTA----ACTCTTAGTCTGTGAA-CAGCTAAATGGCTATTGGCGATGATGTTGCTTATATA-GCATA----TCTAATTATGCTTATTGGTAACTAT--TCCTCGTTTTACACGTACA--CGTATATTTTGAAATATAAA--TGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAGGATG-A--T----AT-CATACCGACTTAAGCGTC-TTTT-G-CATCTTGTATATGT-----TACCCCCC---CCC---CTCT--TTTT--CAATAGACTGAGTATAC-ATGCTTCATTTACAGGTAAACTTTGAGTAAACGAAATAATTGGA------TATCTTGTCCT-AATT---GATATACAATAAGTTTT--AT-CAAACCATACCTTGTCAAATATACAAC-----TAG-TAGCCA-AAATATATCCCGGG-AACCCTTTTTTTAAATGTCAAAATCGATTGAATTGTTTTAAAAGTTACTAA-----CT---AATCAGG----AAATA-----AA--ATA-AATGTA-TGTAGAACTGATCGAATGGCCCTGAAAATAC-AT-TACAGTTTCTTAAA--AAAAATC---T---G---TTTTAACGTGAAGTCTATACATTATGTAATTGT-AAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT---CTA---CC--CG-AAAAATTC-ATA--TCAG-A--------ATATA-TA-ATTCCTA-TCAAATA-T-----AAC------------TTTTTTTAA-------AAAAAATC-TG-CTTAAAGT
gi|5 : AGACTAAGTAA-TCATGTTTCATTTACAAGTTAGCTTTGAGTAAAAGAAATAATTGGA------TATCT-----------------AAACAATGAGTTTG--AT-CAAA-CATGCATTTTCAAAAATGCAGTAGGCCTAGTTAGCCATCAGTATATTCCCGG-GAACCTTTTTTT-TTTTTCATAATCTAC---ATTTCATTAAAAACAGCTA
gi|5 : TTTT-AATGTCAAAATCTATTGAATTCTT----GAGCTGTTAG-----CT---TATTATA----AAATG-----AA---TACAATGTA-TGTAAAAATG--C--ATGGTCCTGAAAA----AC-TCTAGTTTCTT--T--GAAAATC---TCAGA---TTTTAACATTAAGTC----------------GTAAAG-TTGTAA--ATAGTGACT-GAATCA-----A-ATG-ATT-ACACCCCCT-CCTTAATTCCTACT-AAAAATCC-ATA--TCAGAAATATCTACATATA-TA-ATTCCTA-TC-AATA-T----AAAC-------------TTT----A-------AAAAAATC--A-TTAAAAGTttttgctgtagttttaatgtcaaaatctattgaattcttgagctgttagcttattataaaatgaatacaatgtatgtaaaaatgcatggtcctgaaaaactctagtttctttgaaaatctcagattttaacattaagtcgtaaagttgtaaatagtgactgaatcaaatgattacaccccctccttaattcctactaaaaatccatatcagaaatatctacatatataattcctatcaatataaactttaaaaaaatcattaaaagtggaaatcattgcatgaatttattgtaaacataatataaggtcacacggggcct
gi|6 : agactaagtaatcatgtttcatttacaagttagctttgagtaaaagaaataattggatatctaaacaatgagtttgatcaaacatgcattttcaaaaatgcagtaggcctagttagccatcagtatattcccgggaaccttttttttttttcataatctacatttcattaaaaacagctattttgctgtagTGGA------TATCTTGTCCT-AATG---AATAAACAATATTTTTTTTAT-CAAA-CATACACTGTCAAATATACAGTA------GTTAGCCATAAGTATATCCCGGG-AAACATTTTA---AATGTCAAAATCTATTGAATTGTTTTAAAATTTGCTAG-----CT---AATCGTG----AAATA-----AA--ATACAATGTA-TGTACAACTG--C--ATGGTCCTG-AAATACTATGTACAGTTTCTT--T--AAAAATC---TCACA---TTTTAGCGTTAAGTC--TACATTATTTA----------TTGTAA--ATTATGACT-GAATTATCT--ATATG---T-GCCCCC-CC-CCCCA--TTT--CC-TACAAACC-ATAAGTAAGAAG-------ATATT-TATAGTCCTATTCAGATATT----AAACTATAATTTCTTTTTTT----A-------GATAAATTGTGACTTAAAGggaaatcattgcatgaatttattgtaaacataatataaggtcacacggggcct
gi|7 : AAAAT----CGGACTAAGATGCGTTTCACTAAACAGACTACATTTGCTCCCAACTT-------AATTCATGACTTAAAATTTAGGCC-TGCT-------------TA----ACTCGTAGTTTGTAAA-CAATTAAAAGGTTTATGGCGATGATGTTGCTTATATAAGC--------CTAATAAT----ATC--TAATTATACTCCTCGTTTTGCACGT------GTATATTT-GAAATATACAAGTGT--AATTTCTATGAGAATGGGGAAAAAA-TAGCTAACTC-TTTAAAAGATGTA--TGCAAAT-TATTCCGG-----GCGTC-TTTTGGATATCTTGGATATCT-----T
gi|8 : AACTAAATCGTTAACACAATAAA--TGCAAAT-CATTCCAG-----GACTCTTTTTTG-CTGCTCACACCTGT-----T--TTTCT---GTC---CT-T--TTTT--CAATCGGTTAAA-AG-T-GAGC------TATAAGTTAATTGTGA--AAAAGTTATATTTGGATACATGTATCTTGTCCTAAATTTAGAATAAACAATA--TTTT--TT-------------TATCAAATATACA--C----TAGGTAGCCATACTTGTACTTGCGG-AAACTTTTCTTT-g
gi|9 : aaaaaacaacaacaacaaAAAAGGCCTACG-ACCAGTCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTcacaatatatacatgtatgactcgtgtttcacttaaaacagcta
gi|9 : ggctttgtaggctgaaccgtaagctccaggggcccgtttcacaATA----TCTAATTATGCTTATCGGTAACTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatatatctaattatgcttatcggtaacta
blockSeqs : TG G T G . T . . . A GGTT T TGACTTT CT C T CC ATTACAGTATATTTGAG TT C . C AATAA G A ATTA T AC TATACAT A GA G A A T T CA . CTTAA T T A AG ATG T ACT C CT . TA C C TACATG T A TTAG AG TT . C AG G GTAGGCCT . C A T ATACA TGT CCAT CCAAG TT . A A AT GA T TG AGT TCATA C TA A TGAA A AC AT G TAAAC T G T C C ATT TA TA A AG ATATCTAC AT T T A T AAAAA TATAATTTCTTTTTTTA G A
blockSeqs : CA . C G . T . . . A . T . AC T . CC ATTAGGTGTAAG AA C . G AATAA G G . T . TACAC T . . A G T T . . . . T . AT . A . . . . T . T . T . T AA . . . CG G GTAT . T . T . . . . . . G C . . . T AAA AGAGA T . A GTAA A TT . . TCT . . . . C C . A . . G C . . A . A TTTAAAAAAAAT . .
blockSeqs : CC . C T . . . . . A . T . TT T . CC ACTAGGCGTAAC TC C . A GTTAT G T . T . TA T . . A G T T . . . . T . AG . C . . . . G . T . T . T AG . . . CG G GTAT . C . T . . . . . . T A . . . T AA TCAGA T . T TGAA A AG . . . . . . . C C . A . . . A . . A . A TTTTTTTAA . .
blockSeqs : . . . . . . . . . G . A . TT T . CC ACTAGGCGT TT C . C GCTAT G T . T . T A . . . G T T . . . . G . AT . T . . . . G . T . T . T AG . . . AG G TAT . C . T . . . . . . G A . . . A T TCACA T . A TGAA A TT . . . . . . . C C . A . . . A . . . . A TTCCA . .
blockSeqs : . . . . . . G . A . CT G . CC TAAC TT C . T GTTTA G T . T . T . . . G A A . . . . T . AT . . . . . . T . T . T . T AG . . . CT G GTA . A . T . . . . . . G C . . . T T GAG G . G GTAA . AT . . . . . . . C C . A . . . A . . . . . TTTTA . .
blockSeqs : . . . . . A . TC A . CC . GT T . A GT . . . . . . . . . . . . . TG . . . A . T . T . T TT . . . AT T ACT . T . T . . . . . . A A . . . T A TG T . A GTA . AT . . . . . . . . T . T . . . A . . . . . TTTT . .
blockSeqs : . G . . C . . . . AT . . . G . . . T . G A . . . AC G GTA . . . . . . . . . . C C . . . C T TG T . A TTA . AT . . . . . . . . . . . . . . T . . . . . TTTA . .
blockSeqs : . . . . . . . . . A GT . . . . . . . . . A TG . . . GT . G . . . . . . . . . .
blockSeqs : . . CT . . T TG . . . . . . . . . . . . .
blockSeqs : T TG
blockSeqCons : *** TT ACTAGGCGTAAC***** TACAC** A* AN ***** T*** ** T*** ** GTAT**** T* TG********* C* A* TTTTA***********************
originalCons : AAGAGGCNTACG-ACCAGGCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAATCGTAAAAT----CGGACTAAGNTGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATCTATGGCTTAAANTT-AGGCCCTGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTAAA-CAACTAAANGGNTANTGGCGACGATGTTGCTTATATAAGCATA----TCTAATTATGCTTATCGGTAACTAT--TCCTCGTTTTACACGTAC---TGTATATTTTGAAATATAAAAGTGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCGTC-TTTTTG-CAGCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAN-T-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----AAATA-----AA--ATACAATGTA-TGTANAANTG--C--ATGGTCCTGAAAATAC-AT-TACAGTTTCTT--N--AAAAATC---T---G---TTTTAACGTTAAGTC--TACATTATTTAATTGTAAAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
finalCons : AAGAGGCNTACG-ACCAGGCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAATCGTAAAAT----CGGACTAAGNTGCGTTTCACAAAACAGACTACATTTGCACCCGACTA-------AATTTATGGCTTAAANTT-AGGCCCTGCTCATGACTAGGCGTAAC-----TCTTAGTCTGTAAA-CAACTAAANGGNTANTGGCGACGATGTTGCTTATATAAGCATA----TCTAATTATGCTTATCGGTAACTAT--TCCTCGTTTTACACGTACAC--GTATATTTTGAAATATAAAAGTGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCGTC-TTTTTG-CANCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAN-T-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTAT----AGTTAGCCATAAGTATATCCCCGG-AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----AAATA-----AA--ATACAATGTA-TGTANAANTG--C--ATGGTCCTGAAAATAC-AT-TACAGTTTCTT--N--AAAAATCTG---------TTTTAACGTTAAGTC--TACATTATTTAATTGTAAAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACTC-CCCA--CCC--CCA-AAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAACTTTTA-----------------------AAAAAATC-TG-CTTAAAGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TGAAAATCATATGCACAATTGAATTAATTAAATTAGGTCACACAGGTCC
Unaligned ( gi|25 ): ACGGACCCCTGGACACACCAGAGGTGATGCATAGAACTCTTA
Alignments
lowQualScore : 1 1 111 1111 222 22222222222222222 1111 3333333 11111 22222 1111 111 111111 11 11111111 11111 11111 11111 2222222 1111 1 11111 22222222 2 11111 4444444444444444444444444444
lowQualScore : 77 8 3 0 6 1 5 5 000 4 0 2222 1 66 3 0 1 1 5 000 44444444444444444 44 1 5 0 2 66666 2 6 0000 1 0 99 0000000 7 99 6 8 6 1 77 5 44444 5 1 5 22 44444 3333 111 6 77 77 66 5 0 2 222222 1 4 9999 77 00 4 4 99 1 88888888 0 5 6 4 1 0 11111 777 9999 11111 66 5 1 1 66 66 0 0 8 8 44444 5555555 4 55 2 0000 3 77 55 4 77777 4 4 4 4 0 88 999 66 77 5 66 33333333 55 5 5 1 5 66666 0000000000000000000000000000 5 5
lowQualScore : .. . . . . . . . ... . . .... . .. . . . . . ... ................. .. . . . . ..... . . .... . . .. ....... . .. . . . . .. . ..... . . . .. ..... .... ... . .. .. .. . . . ...... . . .... .. .. . . .. . ........ . . . . . . ..... ... .... ..... .. . . . .. .. . . . . ..... ....... . .. . .... . .. .. . ..... . . . . . .. ... .. .. . .. ........ .. . . . . ..... ............................ . .
lowQualScore : 00 0 2 8 7 4 7 7 000 2 7 1111 0 99 9 1 1 0 0 000 33333333333333333 22 4 0 5 8 44444 5 4 6666 4 7 22 0000000 8 22 7 0 6 7 99 7 33333 7 4 7 77 33333 5555 777 7 99 99 00 0 9 0 888888 9 4 6666 99 66 4 4 33 6 77777777 7 0 5 4 9 9 11111 888 4444 11111 11 0 0 0 99 99 8 8 0 0 66666 7777777 6 55 4 1111 0 22 55 0 00000 0 0 0 0 7 33 888 11 88 0 99 11111111 55 0 0 6 0 99999 6666666666666666666666666666 0 0
consensus : AAGAGGCNTACG-ACCAGGCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAATCGTAAAAT----CGGACTAAGNTGCGTTTCACAAAACAGACTACATTTGCACCCGACTA--AATTTATGGCTTAAANTT-AGGCCCTGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTAAA-CAACTAAANGGNTANTGGCGACGATGTTGCTTATATAAGCATA----TCTAATTATGCTTATCGGTAACTAT--TCCTCGTTTTACACG--TACATGTATATTTTGAAATATAAAAGTGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCGTC-TTTTTG-CAGCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAN-T-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----AAATA-----AA--ATACAATGTA-TGTANAANTG--C--ATGGTCCTGAAAATAC-AT-TACAGTTTCTT--N--AAAAATCT---G---TTTTAACGTTAAGTC--TACATTATTTAATTGTAAAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
Reference ( family-1542 ) : AAGAGGCNTACG-ACCAGGCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAATCGTAAAAT----CGGACTAAGNTGCGTTTCACAAAACAGACTACATTTGCACCCGACTA--AATTTATGGCTTAAANTT-AGGCCCTGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTAAA-CAACTAAANGGNTANTGGCGACGATGTTGCTTATATAAGCATA----TCTAATTATGCTTATCGGTAACTAT--TCCTCGTTTTACACG--TACACGTATATTTTGAAATATAAAAGTGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCGTC-TTTTTG-CANCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAN-T-ATGCTTCATTTACAAGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATACANTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AAACCTTTTTTT-AATGTCAAAATCTATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----AAATA-----AA--ATACAATGTA-TGTANAANTG--C--ATGGTCCTGAAAATAC-AT-TACAGTTTCTT--N--AAAAATCT---G---TTTTAACGTTAAGTC--TACATTATTTAATTGTAAAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
gi|1 : AAAAGGCCTATG-ACGAGGCGAGAAGT---AGTCGGGTTGTTAAAAACAGGAGGACTAG-TCATGAAAT----CGGACTAAGATGCGTTTCACGAAACAGACTACATTTGCACCAAACTA--AATC-ATGACTTAAAATT-AG--CCTGC------CTA-G----------CTCGCAGT-TGTAAAATAGTTATAAGTATTATGGCGATGATGTTACTTTTATAAGCCTA----TCTAATTATACT----------------CCTCGTTTTACACG--C---TGTAG---TTGAAATATACAAGTGT--AATTTCTATGACAAT-GGGAAAAAAATAACAAACTC-TTAAAAAGATGTA--TGCAAATTCATTCCGG-----GCGTC-TTTCTG-C-GCTTGTACATGCATGTGTATCCCCTGCTCCT---CT-T--TTTTTTCAGTAGACCAAGTAT-T-ATGTTCCATTAACA-GATAACTCTGAG-AAAATAAATAATTGGA------TATCT-GTCCT-AAT----AATAAACAATATTTTTTT-ATTCAAA-T-TACACT-CCAAACATAC--------TAGTTAGCCATAAGTATATTCCCGGGAAACATTTT--T-AATGTCAAAATCTATTGAATTGTTTTTAAAATTGCTAG-----CT---AATCGTG-----AATA-----AA--ATACAATGTATTGTACAACTG--C--ATTGTCGTG-AAATACTATGTACAGTTTTCT--T--AAAAATC---------TTCCAC----AG-C--TACATTATTTTATTGT-CAATT----A--AT-ATGACT-GAATCA-----G-ATG-A-T-GCCCCCACCACCCCT--TCC--CC---AAATCC-ATA--TAAAAA--------ATATT-TA-ATTCCTA-TC-AATA-T----AAACTTTT--------TTTT----T-------TAAAATTG-TG-CTTAAAGT
gi|10 : ttcacaTGTTGAACTCTT----AAGCTACTAGATACACTTGTAATCATA----AAATA-----CATTGTACAATGTT-TGTAAAAATG--C--TTGATCCT-AAAATA--AT--ATAGTTTCCT--T--GAAAATCTCATA---TTTT--------GTT--TA---TATTGAAACGTAAA-CTTATCA--ATAATGACT-GAATCA-----A-TTA-A-T---------------------------AATATTA-ATA--TCAGAA--------ATATC-TA-ATTTATA-TC------------AAC------------TTCC----A-------AAAAATTC-TG-CTTAAAGTgaaaatcattgcatgaattaataaaataaggccacatcg
gi|11 : acggaccccgggacacaccagaggAACTATAACCAGGC-GT-AAA--CAGGA---CTACATCGTAAAAT----GAGACGAAGTTGCGTTTCATAAAACAA--TACATTTACAACCGACTATGACTTTA--ATCTATAGCT-AGG-CCTGCTCATGATTACAGTATATTTGAGTCTTCGTCTGTAAC-CAACTAAACGAATAATGGCAAC---GTTTCTTATAAAAGCATG----TCTAATTTTGCggaattcattgcatatatctaaatataagtctacct
gi|12 : tttcacaaaaagAAGCGGTGTACG-A--AG----TAAGCTT-AGTCGGGC-GC-AAAAACAGGA---CTAAATCGTAAATTGGTTCGG-CTAAGTTGCGTTTCATAAAACAGACTACATTTGCACCCCACTA--AA-TGATGGCTTAAACTT-AGG-CCTGCTCATGATTA-GGTGTA----AGTTAAAGTCTGTAAA-CAACTGAAGGGT-------GACGATGTTG-TTA---AAGCATA----TCTAATTattttcctaaactcattct
gi|13 : tttcacAAGAGGCAAACA-ATCAG-CT-TAAA-TATATCCGGGC-GT-TAAAATAGGA---CTGAATCATAAGGT----CGAACTAAGTTGCGTTTTGTAAAACAGACCACAATTGCACCCGACTA--AATACATGGCTTCAATGT-AGG-CCTGCTCATG-----------------TCTCAGTCTGTAAA-TAACTAAAAGAATAATGGCGAC-ATGTTGCTTATGGAAGCAt
gi|14 : tttcacAGTTTGCT--T--AAAAATCT---G---TTTTAACGT-AAGTC--TACATTATGTAATTGTAAATTGTGTAA--ATAATGACTGGAATCA-----A-ATG-A-TCGCCCCCACT--CCCA--CCT--CC-AAAAATTCAATA--TCAGAA--------ATATATTA-ATTCCTA-TC-AATA-T------AC------------TTTA----AAAAAAATAAAAAATC-TG-CTTAAAGT
gi|15 : CTGAAATTAC-A----CA--TTCTT--AGTACAAGGCGA--G---TTT--ATGTCATGTT--TTTGTTATGT--TTG-AAAAGCTGCAA--A-AATGACT-GAAACATAAACA-ATGGA-T-GTCCCTACC-CCGCA--CCC--CC-
gi|16 : CAGTCACAAGTTAACTTTTAGCAAAAGAAATAATAGGA------TATCTTGTCCT-AATT---GATAAACAATAAGTTTT--AT-CAAA-CATAC--------ATATACA-TA----TA---AG-TATAAGTATATCca
gi|17 : tctggcAACTCATTTAAAAGATGTACATGCAAAT-CATTCTGG-----GCGTC-TTTTTG-CAGCTTGTATATGTATG--TACCCC-----CCT---CT-T--TTTT--CAGTCGACTAAGTAT-T-ATGTTTCATTTACAAGTg
gi|18 : AGTGTCAAATATACAGTA------ATTAGTCATAGGTATATCCCCGG-AAAC-TTTATTA-AATGTCAAAATATATTAAATTGTTTTGA--GTTACTAG-----CT---AATCATG----AAATA-----AA--ATACA
gi|19 : CCTGAAAATAC-AT-TACAGTTTCTT--A--AGAAATCT---G---TTTTAACGTTAAGCC--TACATGA-TGAATTGTAAATTTTATAAATATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCAC
gi|2 : AAGAGG--TACGGACCAGGCG-TA-GCTA-AGTCGGGC-GT-AAAAACAGGA---CTAAGTCA-AAAAT----CGGACTAAGATGCGTTTCACAAAGCAGACTACATT-GCACCCGACTA--AATTTATGGCTTAAATTT-AGGC--TGCTCATGACTA-GGCGTA----ACTCTTAGTCTGTGAA-CAGTTATCCGGTTATTGGCGATGATGTTGCTTATA--AGCATA----TCTAATTATGATTATCGGTAACTAT--TCCTCGTTTTACACGTATACATGTATATTTTGAAATATAAAAATGT--AATTTCTATGAGAAT-GGG-AAAAA-TAGCTAACTCG-TTAAAAGATGTA--TGCTAAT-CATCCCGG-----GCGTC-TTTTTG-CATCTTGTATATGT-----TACCCCCT---CCC---CT-T--TTTT--CAGTAGACTAAGTAG-T-ATGCTTCATTTACAGGTTAACTTTGAGTAAAAGAAATAATTGGA------TATCTTGTCCT-AATT---GATATACAATAAATTTT--AT-CAAA-CATACCGTGTCAAATATACAGTA----TAGTTAGCCATAAGTATATCCCCGG-AACCCTTTTTTT-AATGTCAAAATCGATTGAATTGTTTTAAAAGTTGCTAA-----CT---AATCAGG----AAATA-----AA--ATAAAATGTA-TGTAGAACTG--C--ATGGCCCTGAAAATAC-AT-TACAGTTTCTTA-A--AAAAATCT---G---TTTTAACGTTAAGTC--T-CATTATTGAATTGT--AATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-G-CCCCACT-CCCCA--CCC--CC-AAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TCAAATA-T----AAAC------------TTTT----A-------AAAAAATC-TG-CTTAAAGT
gi|20 : TAACTTTGAGTAAAAGAAATAATTGGA------TATGTTGTCCT-AATT---GATATACAATAA--TTT--AT-CAAA-CATACCGTGTGAAATATACAG------TAGTTAGCCATAAATATATC
gi|21 : TGCTAA-----CT---AATCATACCATAAATACCAAGAA--ATACAGTGTA-TGTATAAATG--C--ATGGT--TAAGAA-AT-AA-CACAATTACCT--T--GAAAATCA---GAGATTTTAAC
gi|22 : TAATTGTGCTTATCGGTGAGTAT--TCTTC-TTTTG-------ACATGTATATTTTGAAATATAAATGTGCGAAAAATCTATGACAAC-GAAAAAAA
gi|23 : TTTCACAAAACGGACTACATTTGCACCCAATGA--AATTTAGGACTTAAATGT-AGG-CCTGCTC
gi|26 : --TTTT--CAGTAGACTAAGTAG-T-ATGCTTCATTTACA
gi|3 : AGGCG-TAAGCTA-AGTCGGGC-TT-AAAATCAGGA---CTAAGTCATAAAAT----CGGACTAAGATGCGTTTCACAAAACAGACTACATTTGCACCCGACTA--AATCTATGTCTTAAAGTT-AGGCC-TGCTCATGACTA-GGCGT-----------------------AAC---------ATTGGCGATGATGTTGCTTATATAAGCATAATTATGTAATTATGCTTATCGACAACTAT--TCCTCGTTTTACACG--TA------TATTTTGAAATATAAATAAGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAAGATGTA--TGCAAAT-CATTCCGG-----GCATA-CTTTTG-CAGCTTTTATATGT------ACCCCCA---CCCACTCT-TCTTTTT--CAGTAGACTAAGTAT-T-ATGTTTCATTTACAAGATAACTTTGAGTTAAAGAGATAATTAGA------TATCTTGTCGT-AATT---GATAAACATTAAGTTTT--AT-CTAA-CATACAGAGTCATATACACAGTA----TAGTTAACCATAAGTATATCCCCGG-GAACTTTTCTTT-TATGTCAAAATCGATTGAATTGTTTTAAAAGTTGCTAG-----CT---AATCATG----GGATT-----AA--ATACAATGTA-TATAGAAATG--C--ATGGCCCTGAACATAC-AT-TACAGTTTCTT--A--AAAAATCT---G---TTTTAATGTTAA-TC--TGCATTATGT-ATTGT-AAATTTGTAA--ATAATGACT-GAGTCA-----A-ATG-A-T-GCCCCCACT-CCCCA--CCC--CCTAAAAATTC-ATA--TCAGAA--------ATATA-TA-ATTCCTA-TC-AATA-TAAAAAAAT------------TTTT----------------AATC-TG-CATAAAGTg
gi|4 : ttcacaaaaaggtTA-GGCGTA----ACTCTTAGTCTGTGAA-CAGCTAAATGGCTATTGGCGATGATGTTGCTTATATA-GCATA----TCTAATTATGCTTATTGGTAACTAT--TCCTCGTTTTACACG--TACACGTATATTTTGAAATATAAA--TGT--AATTTCTATGAGAAT-GGGAAAAAA-TAGCTAACTCGTTTAAAGGATG-A--T----AT-CATACCGACTTAAGCGTC-TTTT-G-CATCTTGTATATGT-----TACCCCCC---CCC---CTCT--TTTT--CAATAGACTGAGTATAC-ATGCTTCATTTACAGGTAAACTTTGAGTAAACGAAATAATTGGA------TATCTTGTCCT-AATT---GATATACAATAAGTTTT--AT-CAAACCATACCTTGTCAAATATACAAC-----TAG-TAGCCA-AAATATATCCCGGG-AACCCTTTTTTTAAATGTCAAAATCGATTGAATTGTTTTAAAAGTTACTAA-----CT---AATCAGG----AAATA-----AA--ATA-AATGTA-TGTAGAACTGATCGAATGGCCCTGAAAATAC-AT-TACAGTTTCTTAAA--AAAAATCT---G---TTTTAACGTGAAGTCTATACATTATGTAATTGT-AAATTTGTAA--ATAATGACT-GAATCA-----A-ATG-A-T-GCCCCCACT---CTA---CC--CG-AAAAATTC-ATA--TCAG-A--------ATATA-TA-ATTCCTA-TCAAATA-T-----AAC------------TTTTTTTAA-------AAAAAATC-TG-CTTAAAGT
gi|5 : AGACTAAGTAA-TCATGTTTCATTTACAAGTTAGCTTTGAGTAAAAGAAATAATTGGA------TATCT-----------------AAACAATGAGTTTG--AT-CAAA-CATGCATTTTCAAAAATGCAGTAGGCCTAGTTAGCCATCAGTATATTCCCGG-GAACCTTTTTTT-TTTTTCATAATCTAC---ATTTCATTAAAAACAGCTA
gi|5 : TTTT-AATGTCAAAATCTATTGAATTCTT----GAGCTGTTAG-----CT---TATTATA----AAATG-----AA---TACAATGTA-TGTAAAAATG--C--ATGGTCCTGAAAA----AC-TCTAGTTTCTT--T--GAAAATCTCAGA---TTTTAACATTAAGTC----------------GTAAAG-TTGTAA--ATAGTGACT-GAATCA-----A-ATG-ATT-ACACCCCCT-CCTTAATTCCTACT-AAAAATCC-ATA--TCAGAAATATCTACATATA-TA-ATTCCTA-TC-AATA-T----AAAC-------------TTT----A-------AAAAAATC--A-TTAAAAGTttttgctgtagttttaatgtcaaaatctattgaattcttgagctgttagcttattataaaatgaatacaatgtatgtaaaaatgcatggtcctgaaaaactctagtttctttgaaaatctcagattttaacattaagtcgtaaagttgtaaatagtgactgaatcaaatgattacaccccctccttaattcctactaaaaatccatatcagaaatatctacatatataattcctatcaatataaactttaaaaaaatcattaaaagtggaaatcattgcatgaatttattgtaaacataatataaggtcacacggggcct
gi|6 : agactaagtaatcatgtttcatttacaagttagctttgagtaaaagaaataattggatatctaaacaatgagtttgatcaaacatgcattttcaaaaatgcagtaggcctagttagccatcagtatattcccgggaaccttttttttttttcataatctacatttcattaaaaacagctattttgctgtagTGGA------TATCTTGTCCT-AATG---AATAAACAATATTTTTTTTAT-CAAA-CATACACTGTCAAATATACAGTA------GTTAGCCATAAGTATATCCCGGG-AAACATTTTA---AATGTCAAAATCTATTGAATTGTTTTAAAATTTGCTAG-----CT---AATCGTG----AAATA-----AA--ATACAATGTA-TGTACAACTG--C--ATGGTCCTG-AAATACTATGTACAGTTTCTT--T--AAAAATCTCACA---TTTTAGCGTTAAGTC--TACATTATTTA----------TTGTAA--ATTATGACT-GAATTATCT--ATATG---T-GCCCCC-CC-CCCCA--TTT--CC-TACAAACC-ATAAGTAAGAAG-------ATATT-TATAGTCCTATTCAGATATT----AAACTATAATTTCTTTTTTT----A-------GATAAATTGTGACTTAAAGggaaatcattgcatgaatttattgtaaacataatataaggtcacacggggcct
gi|7 : AAAAT----CGGACTAAGATGCGTTTCACTAAACAGACTACATTTGCTCCCAACTT--AATTCATGACTTAAAATTTAGGCC-TGCT-------------TA----ACTCGTAGTTTGTAAA-CAATTAAAAGGTTTATGGCGATGATGTTGCTTATATAAGC--------CTAATAAT----ATC--TAATTATACTCCTCGTTTTGCACG--T----GTATATTT-GAAATATACAAGTGT--AATTTCTATGAGAATGGGGAAAAAA-TAGCTAACTC-TTTAAAAGATGTA--TGCAAAT-TATTCCGG-----GCGTC-TTTTGGATATCTTGGATATCT-----T
gi|8 : AACTAAATCGTTAACACAATAAA--TGCAAAT-CATTCCAG-----GACTCTTTTTTG-CTGCTCACACCTGT-----T--TTTCT---GTC---CT-T--TTTT--CAATCGGTTAAA-AG-T-GAGC------TATAAGTTAATTGTGA--AAAAGTTATATTTGGATACATGTATCTTGTCCTAAATTTAGAATAAACAATA--TTTT--TT-------------TATCAAATATACA--C----TAGGTAGCCATACTTGTACTTGCGG-AAACTTTTCTTT-g
gi|9 : aaaaaacaacaacaacaaAAAAGGCCTACG-ACCAGTCG-TAAGCTA-AGTCGGGC-GT-AAAAACAGGA---CTcacaatatatacatgtatgactcgtgtttcacttaaaacagcta
gi|9 : ggctttgtaggctgaaccgtaagctccaggggcccgtttcacaATA----TCTAATTATGCTTATCGGTAACTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatatatctaattatgcttatcggtaacta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TGAAAATCATATGCACAATTGAATTAATTAAATTAGGTCACACAGGTCC
Unaligned ( gi|25 ): ACGGACCCCTGGACACACCAGAGGTGATGCATAGAACTCTTA