lowQualScore : 11 1111111111 111111 111111111
lowQualScore : 44 88888 3 3 3 44 3 44 44 2 2 3 3 77 666 33 4444444444 3 44 3 44 222222 2 0 555 3 777777777 555 3 3 4 4 6
lowQualScore : .. ..... . . . .. . .. .. . . . . .. ... .. .......... . .. . .. ...... . . ... . ......... ... . . . . .
lowQualScore : 66 33333 3 3 3 88 3 55 66 9 4 1 1 33 666 66 6666666666 3 66 1 22 222222 9 4 444 1 777777777 444 1 1 0 4 0
consensus : NTTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCT--GAA-AAATAGAC----------GGCC-A--ATT-CAA--AG-----ATTCATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AANAAGGAGAATGACAGTACA-GTTGAGAAGAAAGA
Reference ( gi|1 ) : ATTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCC--GAA-TAATAGAC----------GGTC-A--ATT-CAA--AA-----ATTCATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AATAAGGAGAATGACAGTACA-GTTGAGAAGAAAAAGGAAAAA
gi|9 : TTATATT--CTTTA-----T-TG-CAGA-AGACATACA-T-------ACA-----AACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCT--GAA-AAAAAGAC----------GACC-A--ATT-CAA--AAG----ATTCATTC-ATCAATCAGAAATAA---ATATGG---------GTAG---ATAA-AAAAAAGAGAATGACAGTACA-GTTGAGA
gi|2 : TTATATT--CTTTA-----TATGGCAGACAGACATACAGTCTTTATAGCATTGTAAACAAATATGTACATCGTA-TTAGTATAATTACATCAGTGCTTAGAACTAACAGAC----------GGTCAA--ATTACAA--AG-----ATTCATTCAATTAAT-AGAAAT-----ATAT-G---------GTAG---AT---AATAAG--GAATGACAGTACATGTTGAGA
gi|4 : TATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACAAAAGTGCT--GAA-TAACAGAC----------GGTC-A--ATT-CAA--AG-----ATTCATTC-ATTAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AATAAGGAGAATGATAGTACA-GTTGAGAAGAAAG
gi|6 : ttaTATATT--CTTTA-----T-TG-CAGA-AGACA---A-TCTT-ATAGCATT--AAACAAAT-TG-ACA--GTA-TAGG-ATAATTACATCAGTGCT--GAA-TAATAGAC----------GGTC-A--AT--CAA--AG-----ATTCATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-ATAATAAGGAGAATGACAGTACA-GTTGAGAAGAAA
gi|7 : atagTATATT--CTTTA-----T-TG-CAGA-AGACA--CA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGTT--GAA-AAATAGAC----------GGCC-A--GTT-CAA--AG-----ATTCATTC-ATCAATGAAACATAA---ATAT-G---------GTAG---AT-A-AAATAGGAGAATGACAGTACA-GTTGAGAGGAA
gi|10 : taTATATT--CTTTA-----T-TG-CAGG-AGACAT-CA-TTT-----GCATT--AAACAAAT-TGTACAC-GTA-TAA--ATAATTACATCAGTGCC--GAA-AATTAGAC----------GGCC-A--GTT-CAA--AG-----ATTCATTC-ATCAATCAAAAATAA---ATAT-G---------GTAG---AT-A-AAAAAGGAG
gi|16 : aTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-
gi|3 : ATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AA-CAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCT--GAA-TAACAGAC----------GGTC-A--ATT-CAA--AG-----ATTCATTC-ATTAATAAGAAATAA---GTAT-GGTACATTTTGTAG---AT-A-AAT-AGGAGAATGAC-GTACA-GTTGAAAAAAA
gi|8 : ATATT--CTTTA-----T-TG-GGGA-AGACATACA-TCTT-ACAGCATT--AAACAAAT-TGTTCAT-GTG-TAA--ATAATGACATCAATGCC--GAC-AAATAAAC----------GGCC-A--ATT-CAA--AG-----CTACATTC-ACCAAGCAG---------ATAT-G---------GTAG---AT-A-AAAATGGAGAATGACAGTACA-ATTGAGAca
gi|15 : ATATTGCTTTTG-----T-TG-CGGA--GACACG-A-TCTT-ACATCATT--AAACAGAT-TG-ACAT-GTATTAA--ATGA-TACATCtaa
gi|5 : tatcaaTATT--CTTTAGTTTAT-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCT--GAA-AAAT--AC----------GGTC-A----T-CAA--AG-----ATTCTTTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AATAAGAAGAATGACAGTACA-GTTGAGAAAAAA
gi|11 : TATT--CTTTA-----T--G-CAGG-AGACAT-CA-TTT-----GCATT--AAACAAAT-TGTACAC-GTA-TAA--ATATTTACATCAGTGCC--GAA--ATTAGAC----------GGCC-A--GTT-CAA--AA-----TATCATTC-ATCAATCAAAAAT-A---ATA--G---------GTAG---AT-A-AAcc
gi|13 : tatAATT-TGAACAT-GTA-AGA--ATAATTACATCAATGCT--GAA-AAATAAAC----------GGTC-A--ATT-CAACGAA-----A--CATTC-ATCAAa
gi|12 : aacatgt-TGGACAT-GTA-TAA--ATAATTACATCAGATCT--AAA-AAAAAAACCAAAAAAACAGACC-ACCATT-CAA--GATACCGGTATATTC-ATTAAGCAGATATAA---ATAT-G---------GCAG---AT-T-AAAAAGAGGAAgc
gi|14 : TT-CAA--AG-----ATACATTC-ATCAAGCAGATATAATATACAT-GTAT------GTAGCTGAT-A-AAAAGGGAGAATGACAGTACA-Ggat
gi|17 : TTCATTC-ATTAATCAGAAATAA---ATAT-G---------GTAA---AT-A-AATAAcaga
Alignments
lowQualScore : 1111111111 111111111
lowQualScore : 44 77777 3 3 3 3 3 33 44 2 1 2 2 66 555 3333333333 3 44 2 2 2 777777 2 555 2 666666666 555 2 2 1 4
lowQualScore : .. ..... . . . . . .. .. . . . . .. ... .......... . .. . . . ...... . ... . ......... ... . . . .
lowQualScore : 22 77777 1 1 1 4 1 55 22 7 6 9 9 88 444 5555555555 1 22 9 9 7 777777 7 000 9 444444444 000 9 9 0 0
consensus : NTTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCCGAAA---AATAGAC----------GGCC-A--ATT-C-AAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AANAAGGAGAATGACAGTACA-GTTGAGAAGAAAGA
Reference ( family-1511 ) : NTTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCTGAAA---AATAGAC----------GGCC-A--ATT-C-AAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AANAAGGAGAATGACAGTACA-GTTGAGAAGAAAGA
gi|1 : TTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCCGAAT---AATAGAC----------GGTC-A--ATT-C-AAAAAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AATAAGGAGAATGACAGTACA-GTTGAGAAGAAAAA
gi|10 : aTATATT--CTTTA-----T-TG-CAGG-AGACAT-CA-TTT-----GCATT--AAACAAAT-TGTACAC-GTA-TAA--ATAATTACATCAGTGCCGAAA---ATTAGAC----------GGCC-A--GTT-C-AAAGAT-TC------ATTC-ATCAATCAAAAATAA---ATAT-G---------GTAG---AT-A-AAAAAGGAGggaaaaa
gi|11 : aTATT--CTTTA-----T--G-CAGG-AGACAT-CA-TTT-----GCATT--AAACAAAT-TGTACAC-GTA-TAA--ATATTTACATCAGTGCCG-AA---ATTAGAC----------GGCC-A--GTT-C-AAA-ATATC------ATTC-ATCAATCAAAAAT-A---ATA--G---------GTAG---AT-A-AA
gi|12 : tat-TGGACAT-GTA-TAA--ATAATTACATCAGATCTAAAA---AAAAAACCAAAAAAACAGACC-ACCATT-C--AAGAT-ACCGGTATATTC-ATTAAGCAGATATAA---ATAT-G---------GCAG---AT-T-AAAAAGAGGAAa
gi|13 : AATT-TGAACAT-GTA-AGA--ATAATTACATCAATGCTGAAA---AATAAAC----------GGTC-A--ATT-C-AACGAA-AC------ATTC-ATCAAgat
gi|14 : aacatgtTT-C-AAAGAT-AC------ATTC-ATCAAGCAGATATAATATACAT-GTAT------GTAGCTGAT-A-AAAAGGGAGAATGACAGTACA-gc
gi|15 : ATATTGCTTTTG-----T-TG-CGGA--GACACG-A-TCTT-ACATCATT--AAACAGAT-TG-ACAT-GTATTAA--ATGA-TACATCcaga
gi|16 : tatcaaTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-
gi|17 : T-TC------ATTC-ATTAATCAGAAATAA---ATAT-G---------GTAA---AT-A-AATAA
gi|2 : TTATATT--CTTTA-----TATGGCAGACAGACATACAGTCTTTATAGCATTGTAAACAAATATGTACATCGTA-TTAGTATAATTACATCAGTGCTTAGAACTAACAGAC----------GGTCAA--ATTAC-AAAGAT-TC------ATTCAATTAAT-AGAAAT-----ATAT-G---------GTAG---AT---AATAAG--GAATGACAGTACATGTTGAGAt
gi|3 : ATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AA-CAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCTGAAT---AACAGAC----------GGTC-A--ATT-C-AAAGAT-TC------ATTC-ATTAATAAGAAATAA---GTAT-GGTACATTTTGTAG---AT-A-AAT-AGGAGAATGAC-GTACA-GTTGAAAAAAA
gi|4 : TATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACAAAAGTGCTGAAT---AACAGAC----------GGTC-A--ATT-C-AAAGAT-TC------ATTC-ATTAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AATAAGGAGAATGATAGTACA-GTTGAGAAGAAAGAca
gi|5 : ttaTATT--CTTTAGTTTAT-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCTGAAA---AAT--AC----------GGTC-A----T-C-AAAGAT-TC------TTTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AATAAGAAGAATGACAGTACA-GTTGAGAAAAAA
gi|6 : TATATT--CTTTA-----T-TG-CAGA-AGACA---A-TCTT-ATAGCATT--AAACAAAT-TG-ACA--GTA-TAGG-ATAATTACATCAGTGCTGAAT---AATAGAC----------GGTC-A--AT--C-AAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-ATAATAAGGAGAATGACAGTACA-GTTGAGAAGAAAcc
gi|7 : atagTATATT--CTTTA-----T-TG-CAGA-AGACA--CA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGTTGAAA---AATAGAC----------GGCC-A--GTT-C-AAAGAT-TC------ATTC-ATCAATGAAACATAA---ATAT-G---------GTAG---AT-A-AAATAGGAGAATGACAGTACA-GTTGAGAGGAA
gi|8 : taATATT--CTTTA-----T-TG-GGGA-AGACATACA-TCTT-ACAGCATT--AAACAAAT-TGTTCAT-GTG-TAA--ATAATGACATCAATGCCGACA---AATAAAC----------GGCC-A--ATT-C-AAAGCT-AC------ATTC-ACCAAGCAG---------ATAT-G---------GTAG---AT-A-AAAATGGAGAATGACAGTACA-ATTGAGA
gi|9 : TTATATT--CTTTA-----T-TG-CAGA-AGACATACA-T-------ACA-----AACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCTGAAA---AAAAGAC----------GACC-A--ATT-CAAAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATATGG---------GTAG---ATAA-AAAAAAGAGAATGACAGTACA-GTTGAGAtaa
Alignments
lowQualScore : 1111111111 111111111
lowQualScore : 44 77777 3 3 3 3 3 33 44 2 1 2 2 66 1 555 3333333333 3 44 2 2 2 777777 2 555 2 666666666 555 2 2 1 4
lowQualScore : .. ..... . . . . . .. .. . . . . .. . ... .......... . .. . . . ...... . ... . ......... ... . . . .
lowQualScore : 22 77777 1 1 1 4 1 55 22 7 6 9 9 88 1 444 5555555555 1 22 9 9 7 777777 7 000 9 444444444 000 9 9 0 0
consensus : NTTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCCGAAA---AATAGAC----------GGCC-A--ATT-C-AAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AANAAGGAGAATGACAGTACA-GTTGAGAAGAAAGA
Reference ( family-1511 ) : NTTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCCGAAA---AATAGAC----------GGCC-A--ATT-C-AAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AANAAGGAGAATGACAGTACA-GTTGAGAAGAAAGA
gi|1 : TTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCCGAAT---AATAGAC----------GGTC-A--ATT-C-AAAAAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AATAAGGAGAATGACAGTACA-GTTGAGAAGAAAAA
gi|10 : aTATATT--CTTTA-----T-TG-CAGG-AGACAT-CA-TTT-----GCATT--AAACAAAT-TGTACAC-GTA-TAA--ATAATTACATCAGTGCCGAAA---ATTAGAC----------GGCC-A--GTT-C-AAAGAT-TC------ATTC-ATCAATCAAAAATAA---ATAT-G---------GTAG---AT-A-AAAAAGGAGggaaaaa
gi|11 : aTATT--CTTTA-----T--G-CAGG-AGACAT-CA-TTT-----GCATT--AAACAAAT-TGTACAC-GTA-TAA--ATATTTACATCAGTGCCG-AA---ATTAGAC----------GGCC-A--GTT-C-AAA-ATATC------ATTC-ATCAATCAAAAAT-A---ATA--G---------GTAG---AT-A-AA
gi|12 : tat-TGGACAT-GTA-TAA--ATAATTACATCAGATCTAAAA---AAAAAACCAAAAAAACAGACC-ACCATT-C--AAGAT-ACCGGTATATTC-ATTAAGCAGATATAA---ATAT-G---------GCAG---AT-T-AAAAAGAGGAAa
gi|13 : AATT-TGAACAT-GTA-AGA--ATAATTACATCAATGCTGAAA---AATAAAC----------GGTC-A--ATT-C-AACGAA-AC------ATTC-ATCAAgat
gi|14 : aacatgtTT-C-AAAGAT-AC------ATTC-ATCAAGCAGATATAATATACAT-GTAT------GTAGCTGAT-A-AAAAGGGAGAATGACAGTACA-gc
gi|15 : ATATTGCTTTTG-----T-TG-CGGA--GACACG-A-TCTT-ACATCATT--AAACAGAT-TG-ACAT-GTATTAA--ATGA-TACATCcaga
gi|16 : tatcaaTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-
gi|17 : T-TC------ATTC-ATTAATCAGAAATAA---ATAT-G---------GTAA---AT-A-AATAA
gi|2 : TTATATT--CTTTA-----TATGGCAGACAGACATACAGTCTTTATAGCATTGTAAACAAATATGTACATCGTA-TTAGTATAATTACATCAGTGCTTAGAACTAACAGAC----------GGTCAA--ATTAC-AAAGAT-TC------ATTCAATTAAT-AGAAAT-----ATAT-G---------GTAG---AT---AATAAG--GAATGACAGTACATGTTGAGAt
gi|3 : ATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AA-CAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCTGAAT---AACAGAC----------GGTC-A--ATT-C-AAAGAT-TC------ATTC-ATTAATAAGAAATAA---GTAT-GGTACATTTTGTAG---AT-A-AAT-AGGAGAATGAC-GTACA-GTTGAAAAAAA
gi|4 : TATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACAAAAGTGCTGAAT---AACAGAC----------GGTC-A--ATT-C-AAAGAT-TC------ATTC-ATTAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AATAAGGAGAATGATAGTACA-GTTGAGAAGAAAGAca
gi|5 : ttaTATT--CTTTAGTTTAT-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCTGAAA---AAT--AC----------GGTC-A----T-C-AAAGAT-TC------TTTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AATAAGAAGAATGACAGTACA-GTTGAGAAAAAA
gi|6 : TATATT--CTTTA-----T-TG-CAGA-AGACA---A-TCTT-ATAGCATT--AAACAAAT-TG-ACA--GTA-TAGG-ATAATTACATCAGTGCTGAAT---AATAGAC----------GGTC-A--AT--C-AAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-ATAATAAGGAGAATGACAGTACA-GTTGAGAAGAAAcc
gi|7 : atagTATATT--CTTTA-----T-TG-CAGA-AGACA--CA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGTTGAAA---AATAGAC----------GGCC-A--GTT-C-AAAGAT-TC------ATTC-ATCAATGAAACATAA---ATAT-G---------GTAG---AT-A-AAATAGGAGAATGACAGTACA-GTTGAGAGGAA
gi|8 : taATATT--CTTTA-----T-TG-GGGA-AGACATACA-TCTT-ACAGCATT--AAACAAAT-TGTTCAT-GTG-TAA--ATAATGACATCAATGCCGACA---AATAAAC----------GGCC-A--ATT-C-AAAGCT-AC------ATTC-ACCAAGCAG---------ATAT-G---------GTAG---AT-A-AAAATGGAGAATGACAGTACA-ATTGAGA
gi|9 : TTATATT--CTTTA-----T-TG-CAGA-AGACATACA-T-------ACA-----AACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCTGAAA---AAAAGAC----------GACC-A--ATT-CAAAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATATGG---------GTAG---ATAA-AAAAAAGAGAATGACAGTACA-GTTGAGAtaa
blockSeqs : GC GTTTA A G C G G TT GT A T C T GT C ACT CAAAAAAACA A CC A A A CGGTAT A TAT G GTACATTTT CTG A T A T
blockSeqs : . . . . . A . T . . T . . G C . . . . . . . . . . . TAT . . . A .
blockSeqs : . . . . . A . T . . G . . . T . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . A . T . . A . . . T . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . A . T . . T . . . T . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . A . T . . T . . . T . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . A . T . . T . . . T . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . A . T . . T . . . T . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . T . . T . . . T . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . T . . . T . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . T . . . C . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : NTTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCCGAAA---AATAGAC----------GGCC-A--ATT-C-AAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AANAAGGAGAATGACAGTACA-GTTGAGAAGAAAGA
finalCons : NTTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCCGAAA---AATAGAC----------GGCC-A--ATT-C-AAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AANAAGGAGAATGACAGTACA-GTTGAGAAGAAAGA
Alignments
lowQualScore : 1111111111 111111111
lowQualScore : 44 77777 3 3 3 3 3 33 44 2 1 2 2 66 1 555 3333333333 3 44 2 2 2 777777 2 555 2 666666666 555 2 2 1 4
lowQualScore : .. ..... . . . . . .. .. . . . . .. . ... .......... . .. . . . ...... . ... . ......... ... . . . .
lowQualScore : 22 77777 1 1 1 4 1 55 22 7 6 9 9 88 1 444 5555555555 1 22 9 9 7 777777 7 000 9 444444444 000 9 9 0 0
consensus : NTTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCCGAAA---AATAGAC----------GGCC-A--ATT-C-AAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AANAAGGAGAATGACAGTACA-GTTGAGAAGAAAGA
Reference ( family-1511 ) : NTTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCCGAAA---AATAGAC----------GGCC-A--ATT-C-AAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AANAAGGAGAATGACAGTACA-GTTGAGAAGAAAGA
gi|1 : TTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCCGAAT---AATAGAC----------GGTC-A--ATT-C-AAAAAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AATAAGGAGAATGACAGTACA-GTTGAGAAGAAAAA
gi|10 : aTATATT--CTTTA-----T-TG-CAGG-AGACAT-CA-TTT-----GCATT--AAACAAAT-TGTACAC-GTA-TAA--ATAATTACATCAGTGCCGAAA---ATTAGAC----------GGCC-A--GTT-C-AAAGAT-TC------ATTC-ATCAATCAAAAATAA---ATAT-G---------GTAG---AT-A-AAAAAGGAGggaaaaa
gi|11 : aTATT--CTTTA-----T--G-CAGG-AGACAT-CA-TTT-----GCATT--AAACAAAT-TGTACAC-GTA-TAA--ATATTTACATCAGTGCCG-AA---ATTAGAC----------GGCC-A--GTT-C-AAA-ATATC------ATTC-ATCAATCAAAAAT-A---ATA--G---------GTAG---AT-A-AA
gi|12 : tat-TGGACAT-GTA-TAA--ATAATTACATCAGATCTAAAA---AAAAAACCAAAAAAACAGACC-ACCATT-C--AAGAT-ACCGGTATATTC-ATTAAGCAGATATAA---ATAT-G---------GCAG---AT-T-AAAAAGAGGAAa
gi|13 : AATT-TGAACAT-GTA-AGA--ATAATTACATCAATGCTGAAA---AATAAAC----------GGTC-A--ATT-C-AACGAA-AC------ATTC-ATCAAgat
gi|14 : aacatgtTT-C-AAAGAT-AC------ATTC-ATCAAGCAGATATAATATACAT-GTAT------GTAGCTGAT-A-AAAAGGGAGAATGACAGTACA-gc
gi|15 : ATATTGCTTTTG-----T-TG-CGGA--GACACG-A-TCTT-ACATCATT--AAACAGAT-TG-ACAT-GTATTAA--ATGA-TACATCcaga
gi|16 : tatcaaTATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-
gi|17 : T-TC------ATTC-ATTAATCAGAAATAA---ATAT-G---------GTAA---AT-A-AATAA
gi|2 : TTATATT--CTTTA-----TATGGCAGACAGACATACAGTCTTTATAGCATTGTAAACAAATATGTACATCGTA-TTAGTATAATTACATCAGTGCTTAGAACTAACAGAC----------GGTCAA--ATTAC-AAAGAT-TC------ATTCAATTAAT-AGAAAT-----ATAT-G---------GTAG---AT---AATAAG--GAATGACAGTACATGTTGAGAt
gi|3 : ATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AA-CAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCTGAAT---AACAGAC----------GGTC-A--ATT-C-AAAGAT-TC------ATTC-ATTAATAAGAAATAA---GTAT-GGTACATTTTGTAG---AT-A-AAT-AGGAGAATGAC-GTACA-GTTGAAAAAAA
gi|4 : TATATT--CTTTA-----T-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACAAAAGTGCTGAAT---AACAGAC----------GGTC-A--ATT-C-AAAGAT-TC------ATTC-ATTAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AATAAGGAGAATGATAGTACA-GTTGAGAAGAAAGAca
gi|5 : ttaTATT--CTTTAGTTTAT-TG-CAGA-AGACATACA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCTGAAA---AAT--AC----------GGTC-A----T-C-AAAGAT-TC------TTTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-A-AATAAGAAGAATGACAGTACA-GTTGAGAAAAAA
gi|6 : TATATT--CTTTA-----T-TG-CAGA-AGACA---A-TCTT-ATAGCATT--AAACAAAT-TG-ACA--GTA-TAGG-ATAATTACATCAGTGCTGAAT---AATAGAC----------GGTC-A--AT--C-AAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATAT-G---------GTAG---AT-ATAATAAGGAGAATGACAGTACA-GTTGAGAAGAAAcc
gi|7 : atagTATATT--CTTTA-----T-TG-CAGA-AGACA--CA-TCTT-ATAGCATT--AAACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGTTGAAA---AATAGAC----------GGCC-A--GTT-C-AAAGAT-TC------ATTC-ATCAATGAAACATAA---ATAT-G---------GTAG---AT-A-AAATAGGAGAATGACAGTACA-GTTGAGAGGAA
gi|8 : taATATT--CTTTA-----T-TG-GGGA-AGACATACA-TCTT-ACAGCATT--AAACAAAT-TGTTCAT-GTG-TAA--ATAATGACATCAATGCCGACA---AATAAAC----------GGCC-A--ATT-C-AAAGCT-AC------ATTC-ACCAAGCAG---------ATAT-G---------GTAG---AT-A-AAAATGGAGAATGACAGTACA-ATTGAGA
gi|9 : TTATATT--CTTTA-----T-TG-CAGA-AGACATACA-T-------ACA-----AACAAAT-TGTACAT-GTA-TAA--ATAATTACATCAGTGCTGAAA---AAAAGAC----------GACC-A--ATT-CAAAAGAT-TC------ATTC-ATCAATCAGAAATAA---ATATGG---------GTAG---ATAA-AAAAAAGAGAATGACAGTACA-GTTGAGAtaa