lowQualScore : 111111111111111111111
lowQualScore : 444444444444444444444 1 5555 99999999999999999999999999999999999 222222 222 1 44444 111 444 1 2 11 111 33333333 8888888888888888888888 111111 111 666666666 111 11 1111 222 4444444 555555555555555555555555 222222 22222 22 111111 111111 555555555555555 333333 222222222222222 55555555555555555555 1 111111111 111 1111 44444444444444444444 11 333333 11111 1111 1111 44444444444444444444444 11111 55555 2 1 111111 4444444444444 1 1 2222 1 222 555555555
lowQualScore : 6 000000000000000000000 5 4444 6 7 22222222222222222222222222222222222 999999 2 6 333 6 6 6 6 7 6 33333 6 222 555 3 0 33 2 555 2 22222222 2 6666666666666666666666 999999 111 333333333 999 2 6 6 6 2 6 6 66 11 8 7777 555 0000000 77 77 999999999999999999999999 0 66 5 4 888888 66 555 66 5 22222 77 3 77 3 3 88 888888 3 3 444444 3 3 9999999999 3 3 3 666 55 7777 0 3 222222222222222 777 4 4 222222 4 66 444444444444444 00000000000000000000 7 555555555 000 99 4444 88888888888888888888 1 22 77 111111 4 6 55 1 7 55 5 22222 11 888 4 3333 5 2222 0 5 77777777777777777777777 5 33333 1 6 44444 5 2 77 5 999999 4444444444444 5 5 5 4 2 5 2 6 8 9 44 6 5555 6 0 000 111111111
lowQualScore : . ..................... . .... . . ................................... ...... . . ... . . . . . . ..... . ... ... . . .. . ... . ........ . ...................... ...... ... ......... ... . . . . . . . .. .. . .... ... ....... .. .. ........................ . .. . . ...... .. ... .. . ..... .. . .. . . .. ...... . . ...... . . .......... . . . ... .. .... . . ............... ... . . ...... . .. ............... .................... . ......... ... .. .... .................... . .. .. ...... . . .. . . .. . ..... .. ... . .... . .... . . ....................... . ..... . . ..... . . .. . ...... ............. . . . . . . . . . . .. . .... . . ... .........
lowQualScore : 0 000000000000000000000 0 0000 7 3 55555555555555555555555555555555555 555555 0 7 000 0 0 0 0 0 0 00000 0 777 777 3 0 88 5 000 2 22222222 2 5555555555555555555555 222222 777 222222222 777 5 7 7 7 8 7 7 88 00 0 0000 888 0000000 00 99 222222222222222222222222 2 99 0 4 000000 99 999 99 0 66666 99 3 33 3 3 55 555555 1 1 666666 6 6 1111111111 6 6 6 444 99 7777 2 6 888888888888888 888 4 4 222222 4 99 555555555555555 44444444444444444444 1 444444444 222 22 2222 88888888888888888888 0 33 77 777777 3 7 00 0 5 11 0 55555 55 888 4 9999 7 1111 4 7 44444444444444444444444 7 77777 7 7 77777 7 9 99 0 222222 9999999999999 0 0 0 4 0 0 0 7 0 6 00 0 0000 5 0 000 888888888
consensus : ATCTTGGCTCGTATAATAAATATATGAATGAAAAGATATTGATTATTTATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTG------------TAAAAT--TTCAGGTAGAATA-TTGTACATGTN----ATGTGTAAAAGTTTAGTACAAAAAGAAAACCTATTACCATTCAGTGCTAGTTTATCTTTTTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACATACT-GGTGTCCCAGAGAAA-AGGGGA-TCCAA--CCCCTGGAACACCCCCC-----CN-CCCTTTTTTTTTNTCTC----TC---A-------TCGCCAA------TG---CATAT--CGTA-TGTACATGTNCATGCATGT-CGA-ATA-CACTC-T-AATTAAAA--TTCA-TGA----CGGTGAGGT--CGTGTTT-------AT-TTCCT--AAA-------------GCA--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-T-AG--AG-CAAGCTATTTTCA--GGTA-GGTCATTGG-AGTTCAAA-CAGG-TTT-C----A-TAATG-GAGA--G-T-TC-TA-GTGAA-A----T-TCTT-GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG--ATGT---TA---A-CG-TAC--GG--CTATCGCTG-T--A-----------C---GAAATTT----AA------N-G----TTTTTGATAATATAC-AAACA---CAGCCTGAATTA--TT----TAACCG---TAC-----G-TCCT-T-CGAATAT-AT-GTTTCTAG--C-TCCGTGAAAGTGT-GGGCGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCC-CAAGCTTAAA---CTCAGA-CT----TATATATCG-TTTGTA--------------------G-TG--A--ATGTATG-CGCCATG-G-TAACA-TTGAAAT--CATGAAAGTA------CAAATGTTAAT----G-A--CN--GA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-AATTTATTTTT-ATGA-ATATACTGGG----GNCCG-CAGCGCATAGC-CAT-TTCTCTTCATC
Reference ( gi|1 ) : ATCTTGGCTCATATAG--AATA-----ATGAAA---TATTGATTATTGATTTTTATTTTTGAAATA-TATATGTACTCGTAAGTCTTG------------TAAAATAGTTCAGGTA-AATC-CTGTACATGCA----ATGCGTAAAAGTTTATTTCAGAAAGAAAATCCATCACCATTCAGTGCTAGTTAATTTTGCTA-AGCAAAGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAAGATGGGA-TC-AA--CCCCTGGAACACCTCCC-----CA-CTTTTTTTTTTTAT-TC----T------------TCGCCAA------TG---CATAT--CATA-TATACATTTCCATGCATAT-CGA-ATA-CATTC-T-AATTAAAG--TCCA-TGA----CGGTGAGGA--CGTGTTT-------AT-TTCCT--AAA-------------GCA--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-T-AG--AG-CAAGCTGTTTTCA--GGTA-GGTCATTGG-AGTTCAAA-CAGG-TTT-C----A-TAATG-GAGA--G-T-TC-TA-GTGGA-A----T-TCTT-GC-TG-AT---TTA-TTTTT----TAAAAT-ATCA---CGC-ATGT---TA---A-CA-TAC--G---CTATCGCTG-T--A-----------C---GAAATTT----AA------T-T----TTTTTGATA-TATAC-AAACA---CAGCCTGAATTA--TT----TAACCG---GAC-----G-TCAT-T-CGAATAT-AT-GTTTCTA---C-TCTGTAAAAGTGT-GGACGGGGTCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCC-CAAGCTTAAA---TTCAGA-CT----TATATATCG-TTTATA--------------------G-TG--A--ATGTATG-CGCCATATGTTAACA-TT-AAAT--CATGCAAGTA------CAAATGTTAAT----G-A--CA--GA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATGTTT-ATAA-ATTTACT-GG----GCCCG-CATTGCATAG--CA--TTATCTTCATC
gi|2 : ATCTTGGCTCGTATAATAAATATATGAATGAAAAGATATTGATTATTTATTTTTATTTTTGAAAAAGCGTGTGCAAT-GCAGG----G-------------AAAATG---CATGTA----C-ATGTACATGTATACTATATGTAAAA
gi|2 : ttATATGTACTCGTAAGTCTTG--------------AAAT----CAAGTA-AATAATTGTACATGTT----ATGTGTAAAA-CTTAGTACAAAAAGAAAACCTATTACCATTCAGTGCTAGTTTATCTTTTTATAGCAAAGACCTtatgtactcgtaagtcttgaaatcaagtaaataattgtacatgttatgtgtaaaacttagtacaaaaagaaaacctattaccattcagtgctagtttatctttttatagcaaagaccttttgaaaatgttgttaaaaactacatagatgacccagggaaaaggggatccaaccccaggacacccccctttctctctctctctctctctctcggaattcgccaatgcatatatactgtacatgtgcatgcatgtcgaatagactcttaattaaaattcatgatggtgaagtcgtgtttatgtaccaaaaacagcggacaatgcattaggatcacgtgatttaaccttttgtgtagagtaagctatttcaggtaggtcatggagttcaataatctagtgaaatctttccgatctattatttaaaatatcagcgatgtaacgtacgggcttatcgctgtgcgaaatttaaaagttttcaataaatattaccacaca
gi|20 : ttatcttggctcgtataataaatatatgaatgaaaagatattgattatttatttttatttttgaaaaagcgtgtgcaatgcagggaaaatgcatgtacatgtacatgtatactatatgtaaaATATGTACTCGTAAGTCTTGAAATCAGGTCTATAAAAT--TTCAGGTAGAATA-TTGTACATGCA----ATGTGTAAAAGTTTAtttgaaaatgttgttaaaaactacatagatgacccagggaaaaggggatccaaccccaggacacccccctttctctctctctctctctctctcggaattcgccaatgcatatatactgtacatgtgcatgcatgtcgaatagactcttaattaaaattcatgatggtgaagtcgtgtttatgtaccaaaaacagcggacaatgcattaggatcacgtgatttaaccttttgtgtagagtaagctatttcaggtaggtcatggagttcaataatctagtgaaatctttccgatctattatttaaaatatcagcgatgtaacgtacgggcttatcgctgtgcgaaatttaaaagttttcaataaatattaccacaca
gi|26 : tatatgtacaatggtacaTTA------------TAAAAT--TTCAGGTAGAAT---TGTACGTGGT----ATGCGTAAAAGTTTAgtac
gi|2 : AAACTACATA---GATGACCCAGGGAAA-AGGGGA-TCCAA--CCCCAGGA-CACCCCCCTTTCTCT-CTCTCTCTCTCTCTCTCGGAAT------------TCGCCAA------TG---CATAT---ATACTGTACATGTGCATGCATGT-CGA-ATA-GACTCTT-AATTAAAA--TTCA-TGA----TGGTGAAGT--CGTGTTT-------AT-GTACC--AAAAACAGCGGACAATGCA--------TTAGGATCA--CGTG-A-TTTAA-CCTTT-TG--TG-T-AG--AG-TAAGCTA-TTTCA--GGTA-GGTCA-TGG-AGTTCA-----------------A-TAA-------------TC-TA-GTGAA-A------TCTT-TC-CG-AT---CTA-TTATT----TAAAAT-ATCAG--CG--ATG----TA---A-CG-TAC--GGGCTTATCGCTG-T--G-----------C---GAAATTTA---AA------A-G----TTTTCAATA-AATAT-TACCA---CAgtacng
gi|9 : ttatcttggctcgtataataaatatatgaatgaaaagatattgattatttatttttatttttgaaaaagcgtgtgcaatgcagggaaaatgcatgtacatgtacatgtatactatatgtaaaatatgtactcgtaagtcttgaaatcaagtaaataattgtacatgttatgtgtaaaacttagtacaaaaagaaaacctattaccattcagtgctagtttatctttttatagcaaagaccttttgaaaatgttgttaaTACATGCTAGGTGTCCCAGAGAAA-AGGGGATTC-AA--CGCCTGG-ACCCCCCCC-----CC-CCTTTATCTCTCGG-AA----T------------TCGCCAA------TG---TATATACTGTA-CGTACATGTTCATGCATAT-CGA-ATA-TATTC-T-AA-TAAAG--TCCA-TGA----CGGTAAGGT--CATGTTT-------ATGTTCCT--AAA-------------GCA--------TTGGAATCA--TGTG-A-TACAATC-TTA-TG--TG-T-AG--AG-CAAGCTA-TCTCG--GGTT-GGTCA-TGG-AGTTCAAA-CAGG-TTT-ca
gi|3 : aactaTACTCGGTGTCCCAGAGAAAG---GGA-TCCAATCCCCCTG--ACACCCCTC-----CGTCTCCTTTTTTTTCTCTC----TCGGAA-------TCGCCAA------TG---CATAT---GTACTGTACATATCCATTCATAC-CGA-ATA-CATTC-T-A-TTAAAAACTCCA-TGA----CGGTGAGGGTCCGTGTTTTAT----GT-TTCCT--AAA-------------GCAA-------TTGGAATCAACTGTG-A-GATAATCT-----G--TG-TTAGTGAG-CAAGCT-TATCCAAAGGTAAGGTCA--GG-A-TTCAAA-CAGT-TCT-C----AATAATG-GAGAAGG-T-TCCTA-GTG-A-A----T-TCTT-G--TG-AT---T-A-TTTTT----TAAAAT-A-CA---CG--ATGT----A---A-CA-TACT-G---CTATGCCTG-T--A-----------C----AAATTA----AA------A-G----TTTTTGATA-TATAC-AAACA---CAGCCT--ATTA--TT----TAACCG---TAC-----GGTCAT---CGAATG--AT--TTTCTG---C-TCTGTGAAAGTGT-GGCATGGGCCAAATACGTATAGA-----GAATTTCAGT---TAATGAG-AAACCC-CAAGCT--AA---CTCAGAACT----TGTATATTGGTTTGTA--------------------G-TGCCA--ATGTA-G-TGC-ACATG-----A-TT-AAA----------ATA------CAAATGTTAAT----GAA--CT--G--GT-CAT-GTAAATTCT-AGCATGAAACt
gi|8 : cC-AA--CCT-TGGAAAACCTCCT-----CA-CCCTTTTTTTTTAT-TC----TCTCTACGGAATTTCGCCAAAAATGTTG---C-TAC--C----TGTACATGTACATGCATGTGCGAGAGAGCGACC-T-AAATAAAG--TTCAATGAATCACGGTGAGGT--CGT--TTGGAATGAAT-GTTATGAAAA-------------GGAG-------TTGAAATCA--GGTGCACTATAATATTTAATGAATGCT-AG--AAACAA--CGTT---------A----CATTGGGAGTTCAAA-CAG---TT-A----A-GAACGCGAGA--G-G-TT-T--GTGAA-AAAAAT-TCTT-GC-TG-AT---TTA-TTTTTTTTGTTAAATAATCAGT-CTG-ATGCACATA---A-TG-TATCGG---CTATCGCTG-TAAA-----------CGGAGAGATTTAGAAAA------T-T----TTTatggccatttctcttca
gi|15 : ----T------------TAGCCAA------TG---CATAT------------A---CTATGCATGC-CGA-ATA-CACTC-TTAATTGAAA--TTCA-TGA----CAGTGAAGT--CGTGTTT-------AT-GTTCC--AAATGCAGCGGACAATGCA--------TTAGGATCA--CGTG-A-Taataataatactataaca
gi|4 : ggaaCAA------TGGAACATATACTGTA-TATACATT--CAT--AAAT-CAA-ATA-CACTC-T-
gi|5 : -TTCCT--AAA-------------GCA--------TTGGAATCA--CGTG-A-TTTAATC-------------------G-CAAGCTATCT-CA--GGTA-GGTCAT-GG-GGTTCATA-CAGG-TTTTC----A-TAATG-GAGA--G-T-TC-T------------------T-GC-TG-AT---TTA-TTTTT----TAAAAC-ATCAGCGCGC-ATGG---TA---ATCA-TAC--GGC-CTATCGCTGGT--AATCATGGAGATC---GAAATAT----GACAGGTGT-A----TTTTTGATA-TATACCAAACATCACAGCCTGAATTATTTT----TAACCGTATGAT-----C-TC-T-T-CGAATATGATGGTTTCTAGCTC-TCCTTAAAAGTGTGGGACGAGGCCAAA-------------------TTCAGTATCTAATGAGGAAACCT-CAAGCTTAAGAGCTACAGA-CT----TATATATTG-TTTTTA--------------------G-TG-----ATGTATGCCGCCATG---TAACT-TTGAAATACCATGAAAGTA------CAATTGTTAATCCGCA-A--CA--GA-ATACATCGT-AATTCT-AGTACGAAACGAGAA-AATTTATTTTT-ATgtttttgaggcagtgcatctgaatcatgtgatataatctcttgtatagagcgagctattccaggtaggtcatggagttcaaacaggtttccattgtagagaggctctagtaacatttttgctaatcgtttttttttttaagtatcagtgatataaggtacagtacagtcatcaccatacgaaattaaaaagtttttgataatatacaaacacaacctgattgatttaactatacctacttgcaggcacatatttccagatctgttaaagtatgaacagggctaaatgcctacgagaacatcagttaatgaggaaacttcaagcttaaacttggagttatatactgtttgttgtgaatgtatgcgccaagtaacatttaaatcataaaagtacaaatgctattgaattgaatcatgtaaattttaacatgaaacaagaaaatttatatttatgaatatattgggggctgtcagcatgcatccattta
gi|17 : -TTCCT--AAA-------------ACAGCGGACGATTCGAATCA--CGTG-G-TATAATC-TTT-TG--TG-T-AG--AG-CAAGCTA--TTGA--GGTA-GGCCA-CGG-AGTTCAAA-CAGGATTT-C----A-TAATG-GAAA--G-
gi|4 : gtg-------------GCA--------TCTGAATCA--TGTG-A-TATAATCTCTT--G--TA-T-AG--AG-CGAGCTATTC-CA--GGTA-GGTCAT-GG-AGTTCAAA-CAGG-TTT-CC---A-TTGTA-GAGA--GGC-TC-TA-GTAAC-A----T-TTTT-GC-TA-ATCGTTTT-TTTTT----TTAAGT-ATCA---GTG-ATAT---AAGGTA-CAGTACA-G---TCATCACCA-T--A-----------C---GAAATTA----AA------AAG----TTTTTGATAATATAC-AAACA---CAACCTGATTGA--TT----TAACTA---TAC-----C-TACT-TGCAGGCAC-AT-ATTTCCA---GATCTGTTAAAGTAT-GAACAGGGCTAAATGCCTAC-GA-----GAACATCAGT---TAATGAGGAAACTT-CAAGCTTAAA---CTTGGA-GT----TATATACTG-TTTGTT--------------------G-TG--A--ATGTATG-CGCCA---AGTAACATTT-AAAT--CATAAAAGTA------CAAATGCTATT----G-A---ATTGA-AT-CAT-GTAAATTTT-AACATGAAACAAGAA-AATTTATATTT-ATGA-ATATATT-GG----G
gi|13 : caatggaacatatactgtatatacattcataaatcaaatacactctgtttttgaggcagt-TATAATCTTTT--G--TT-C-AT--AG-CA-GATATTC-CG--GGTA-TATTACTA----TTCAAA-CAGATTTT-C----A-T-ATG-GGGG--G-C-TC-TA-GAAAATA----T-TTTT-GC-TATAT---TT--TTTTT----T-AATT-ATCA---Cggctgtcagcatgcatccattta
gi|19 : TTTCA--GGTA-GGTCAT-GG-AGTTCAAA-CATA-TTTTC----A-TAATG-GAGA--G-GGTC-TA-GCGAA-A----T-TCTT-GC-TG-AT---TTATTTTTT----TAAAAT-AGCAG--CG--ATG----TA---A-CA-TAC--G---cgattccgatgtacaggttatccgccaaattaaa
gi|18 : gTTTCA--GGTA-GGTCA-TGA-AGACTAAA-CAGG-TTTCC----A-TAAGG-GAGA--G-
gi|10 : gttaTTCAA-GGTA-GGTTGT-GG-AGTTCTTATCAGG-TTT-TCAGAA-AAATG-GAGAT-G-T-AT-TA-GTTAA-A----TATTTTAGCGTA-AT---TT---TTGT----TAAAAT-ATCA---gtttttttttggggggggggggatttgtaaagtatctgcgatgtaatgtacggttat
gi|25 : tccgataatatgatcgaatacattgttttgaaagaA--GGTA-GATCAT-AG-AGTTCAAA-CAGA-TTG-CT---T-TAATG-GAGAG-G-T-TC-CA-TTAAG-A----T-TTTtcgaaacgacttgcacctttgtcaaagaaaattaaaaatggcctttaatgatatacaaacataatg
gi|6 : -TTT-C----A-TAATG-GAGA--GGT-TC-TA-GTGAA-A----T-TCTT-GC-TG-AT---TTA-TTTTT----TAAAAT-ATCA----GCGACGTAA-TA---A-CG-TAC--GG--CTATCACTG-C--A-----------C---GGAATTT----AA------AAG----TTTTTGATAATATAC-AAACA---CAGCCTGAATTA--TG----CAACCG---TAC-----G-TTCTCT-CGAATAT-AT-GTTTCTAG--C-TCTGTAAAAGTGT-GGGCGGGGCCAAATACCTAT-GA-----GAATGTCAGT---TAATGAGGAAACCC-CAAGCTTAAA---CGCAGA-CT----TATATATCG-TTT-TA--------------------G-TG--A--ATGTATG-CGCCATG---TAACA-TTGAAAT--CATGAAAGTACAATTGCAAATGTTAATA---A-A--CT--GA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-AATTTGTTTTT-ATAA-ATCTACTGGG----GGCCG-CGGCGCATAAC-CAT-TTCTCTTCA
gi|7 : ggt-TAATT-GAGA--G-G-TC-CAAGTGCA-A----T-TATT-GC-TA-AT---TTA-GTTTT----AAACAT-ATCA----GCGATGT----A---A-CG-TAC--GA--CTATCGGTG-T--A-----------T---GGAATTT----AA------C-G----TTTTTGATAATATAC-A-----------CT--------TT----TAACCA---TGT-----G-TTCTCT-CGAATAT-AC-GTTTCTAG--C-TCCATGAAAGTGG-GGGCGGGGCCAAATACCTAT-GATATGAGAACTTCAGC---TAACGAGGAAACCC-CAAGCTTAAG---CTCAGA-CT----TATTTATCG-TTTCTT--------------------GTTA--A--ATTT-CG-TGCCATGTG---ACA-TTGAAAT--CATAAAATTA------CAAATGTTAAT----GAA--CT--GA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-CATTTGTTTTTGATAA-ATATAAT-GGGGGCGCCTG-CA---CATAGC-CA--TT-TCT
gi|24 : GA-A----T-TCTT-GC-TG-AT---TTA-TTTTT----TAAAAT-ACCAG--CG--ATG----TA---A-CG-TACG-G---CTATCACTG-ctaca
gi|11 : tTATCGCCA-T--A-----------C---AAAATTA----AA------T-TCCTCTTTTTAA-A-TATAC-T---------GTCCAAGTTA--TTCAATTAACTG---TACCTACTG-TCAG-T-C-------AT-GTTTCT--------TG---ATTTGT-G--------------CCTAG-GG-----AAATATTAGC---TAATGATGAAACCCTCAAG
gi|23 : tattatcgatataaggtagttataATTCCTAT-GA-----GAATTTCAGT---TAATGAGGAATCCC-AAAGCTTAAA---CTCAGA-CT----TGTATAGCG-TTTGTA--------------------A-TG--A--
gi|12 : TAT-GA-----GAAATTCAGC---TAAGGAGGAAACCC-CA
gi|16 : tattcctaaataccatcgatatggggtacaattatcatcaagcgtaattaaaaagtttttatggtacacagatgcgactgtacatacttgcgcccttctatttccagatctgtaaaaaAATAAGGAAACCT-CAAGCTTAAA---CTGAG--TTATAATATATATAG-TGTATACTGTACTCTTTGTATTATTTG-TA--ATGATGCATG-CGCCATG---TAACA-TT-CATT--CAT
gi|14 : TAACA-TTGAAAT--CATGAAAGTA------CAAATGTTAAT----G-AAACA--GA-AT-CAT-GTAAATTCTTAGCACGAAGCGAGAA-AATTTATTTTT-ATGA-ATATACTGGG----GGCCA-CATTGCATAAGCCAT-TTCTCTTCAcaca
gi|27 : TGTTAAT----G-A---ATTGATCT-CAT-GTAAATTCT-AGCATTAACTAAGAACAATT
gi|28 : -AT-CAT-GTAAATTCA-AGCACAAAACAAGAA-A
gi|22 : T-AACATGAAACAAGAA-AATTTATATTT-ATGATATTT--T-GGA---GTCCGTCAGCACATTG--CAATTTCACTTCATCtatactgggggccgcgg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): ATCTGATTATTCGTTTTTATTTTTGGAAAAGCACTTGCGATGCAGTGAAAATACATGTACCTGTATACTATGCATACTAAACATGTTTTCATAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 22222 222 111 5555555555555 11111 2222222 111111 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 111 11 11 111 77777777777777 111 444444444 1111 2222222 555555555555555555555555 111111 1111 22 111111 111111 11111111 22222 222222222222222222 222222222222 111 1 11111 11111 3333333333333333 11111 111 22 111111 222222222 1 11
lowQualScore : 88 77777 111 4 1 888 2 3 1111111111111 33333 4444444 999999 2 4 3 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 0 555 11 11 444 1 8 3 1 8 44444444444444 000 666666666 777 888 5 5 0 5 5 66 0 888 5 2222 77 1 8888888 66 66 222222222222222222222222 66 4 4 999999 66 4 4 66 4 4 5555 77 3 33 3 3 77 666666 2 2 333333 3 55 666666 2 44444444 3 3 555 33 6666 2 666 777 33333 555 2 2 2 555 44 3 0 3 555555555555555555 99 888888888888 2 4 4 777 000 77 8888 1 5 99 77 77 1 2 77 22 5 22222 1 888 66 5 22222 5 3333333333333333 5 22222 4 5 000 0 5 5 77 11 3 77 666666 777777777 1 4 4 4 4 4 3 4 0 1 1 99 00
lowQualScore : .. ..... ... . . ... . . ............. ..... ....... ...... . . . . ...................................................................................................... . . ... .. .. ... . . . . . .............. ... ......... ... ... . . . . . .. . ... . .... .. . ....... .. .. ........................ .. . . ...... .. . . .. . . .... .. . .. . . .. ...... . . ...... . .. ...... . ........ . . ... .. .... . ... ... ..... ... . . . ... .. . . . .................. .. ............ . . . ... ... .. .... . . .. .. .. . . .. .. . ..... . ... .. . ..... . ................ . ..... . . ... . . . .. .. . .. ...... ......... . . . . . . . . . . . .. ..
lowQualScore : 55 00000 000 0 2 999 5 2 6666666666666 22222 6666666 888888 5 0 0 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 888 00 22 000 0 0 8 0 0 88888888888888 000 000000000 444 444 7 7 4 7 7 77 1 777 7 1111 99 4 6666666 11 11 222222222222222222222222 11 4 0 999999 11 4 4 11 4 4 1111 33 1 88 1 1 11 333333 9 9 888888 1 44 999999 9 22222222 1 1 444 88 1111 9 444 999 99999 000 9 9 9 111 22 1 4 6 111111111111111111 55 777777777777 3 0 0 888 777 99 4444 4 7 33 44 99 4 7 44 22 0 55555 0 888 99 0 55555 0 1111111111111111 0 55555 5 0 111 1 7 7 99 66 0 99 444444 555555555 0 4 4 4 0 0 8 4 4 0 4 22 22
consensus : ATCTTGGCTCGTATAGTAAATATATGAATGAAAAGATATTGATTATTNATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTG------------TAAAAT--TTCAGGTAGAATA-TTGTACATGC----TATGCGTAAAAGTTTAGTACAGAAAGAAAACCCATCACCATTCAGTGCTAGTTNATCTTNCTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAA-AGGGGATCCAA--CCCCTGGAACACCCCCC---CNCC-CTTTTTTTTTAT-CTCTC------GGAATT--CGCCAATG---CATAT--CG-TAC-TGTACATGTNCATGCATGT-CGA-ATA-CACTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--TCGTGTTT-------AT-TTCCT--AAA-------------GCA--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-T-AG--AG-CAA-GCTATTTTCA--GGTA-GGTCATTGG-AGTTCAAA-CAGG-TTT-C----A-TAATG-GAGA--G-T-TC-TA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ATGT---TA---A-C-GTA-C-G-G--C-TATCGCTG-T--A-----------C---GAAATTT--AAAA---G------TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGTACG-TC-CT-T-CGAATAT-AT-GTTTCTAG--CTCCGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AACT-CAG-----A-CTTATATA----------------TCG-T-----TTGTAG-TG--AATGTATG-CGC-C--AT-GTAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT----GAA--CTGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATNTTT-ATGAATATACTGGGGGCCG-CGGC--GCAT-AGCCATTTCTCTTCATC
Reference ( family-1506 ) : ATCTTGGCTCGTATAATAAATATATGAATGAAAAGATATTGATTATTTATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTG------------TAAAAT--TTCAGGTAGAATA-TTGTACATGT----NATGTGTAAAAGTTTAGTACAAAAAGAAAACCTATTACCATTCAGTGCTAGTTTATCTTTTTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACATACT-GGTGTCCCAGAGAAA-AGGGGATCCAA--CCCCTGGAACACCCCCC---CNCC-CTTTTTTTTTNT-CTCTC------A----T--CGCCAATG---CATAT--CG-TA--TGTACATGTNCATGCATGT-CGA-ATA-CACTC-T-AATTAAAA--TTCA-TGA----CGGTGAGG--TCGTGTTT-------AT-TTCCT--AAA-------------GCA--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-T-AG--AG-CAA-GCTATTTTCA--GGTA-GGTCATTGG-AGTTCAAA-CAGG-TTT-C----A-TAATG-GAGA--G-T-TC-TA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ATGT---TA---A-C-GTA-C-G-G--C-TATCGCTG-T--A-----------C---GAAATTT--AAN----G------TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGTACG-TC-CT-T-CGAATAT-AT-GTTTCTAG--CTCCGTGAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AACT-CAG-----A-CTTATATA----------------TCG-T-----TTGTAG-TG--AATGTATG-CGC-C--ATGGTAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT----G-A--CNGA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-AATTTATTTTT-ATGAATATACTGGGGNCCG-CAGC--GCAT-AGCCATTTCTCTTCATC
gi|1 : ATCTTGGCTCATATAG--AATA-----ATGAAA---TATTGATTATTGATTTTTATTTTTGAAATA-TATATGTACTCGTAAGTCTTG------------TAAAATAGTTCAGGTA-AATC-CTGTACATGC----AATGCGTAAAAGTTTATTTCAGAAAGAAAATCCATCACCATTCAGTGCTAGTTAATTTTGCTA-AGCAAAGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAAGATGGGATC-AA--CCCCTGGAACACCTCCC---CACT-TTTTTTTTTTAT--TCT------------T--CGCCAATG---CATAT--CA-TA--TATACATTTCCATGCATAT-CGA-ATA-CATTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--ACGTGTTT-------AT-TTCCT--AAA-------------GCA--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-T-AG--AG-CAA-GCTGTTTTCA--GGTA-GGTCATTGG-AGTTCAAA-CAGG-TTT-C----A-TAATG-GAGA--G-T-TC-TA-GTGGA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCA---CGC--ATGT---TA---A-C-ATA-C---G--C-TATCGCTG-T--A-----------C---GAAATTT--AAT----T------TTTTTGAT-AT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGGACG-TC-AT-T-CGAATAT-AT-GTTTCTA---CTCTGTAAAAGTGTGGA-CGGGGTCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AATT-CAG-----A-CTTATATA----------------TCG-T-----TTATAG-TG--AATGTATG-CGC-CATATGTTAACATT-AAAT--CATGCAAGTA------CAAATGTTAAT----G-A--CAGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATGTTT-ATAAATTTACT-GGGCCCG-CATT--GCAT-AG-CA-TTATCTTCATC
gi|10 : TTCAA-GGTA-GGTTGT-GG-AGTTCTTATCAGG-TTT-TCAGAA-AAATG-GAGAT-G-T-AT-TA-GTTAA-A----TATTTTA-------GCGTA-AT---TT---TTGT----TAAAAT-ATCAT--CG---A-------A---A-C-G-A-C-TTG--C--ACCTTTG-TCAA-----------A---GAAAATT--AAAAATGG------CCTTTAATGAT-ATAC-AAACA---TA
gi|12 : tccgataatatgatcgaatacattgttttgaaagaTA-TTCCT------AAAT-ACCAT--CG---ATAT---GG---G---GTA-C-A-A--T-TATCATCA-A--G-----------C---GTAATTA--AAAA---G------TTTTT-ATGGT-ACAC-AGATG---C-GACTG---TA--CATA--CTTGCG-CC-CT-T-C--------T-ATTTCCAG--ATCTGTAAAAAT---------------------AT-GA-----GAAATTCAGC---TAAGGAGGAAACCCCAatg
gi|13 : -TATAATCTTTT--G--TT-C-AT--AG-CA--GATATTC-CG--GGTA-TATTACTA----TTCAAA-CAGATTTT-C----A-T-ATG-GGGG--G-C-TC-TA-GAAAATA----T-TTTT--------GC-TATAT---TT--TTTTT----T-AATT-ATCAC--CG---ATTC---CG---A-T-GTA-CAG-G--T-TATC
gi|14 : TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT----G-AAACAGA-AT-CAT-GTAAATTCTTAGCACGAAGCGAGAA-AATTTATTTTT-ATGAATATACTGGGGGCCA-CATT--GCATAAGCCATTTCTCTTCAcgccaaattaaa
gi|15 : GCCAATG---CATAT------------AC-----TATGCATGC-CGA-ATA-CACTC-TTAATTGAAA--TTCA-TGA----CAGTGAAG--TCGTGTTT-------AT-GTTCC--AAATGCAGCGGACAATGCA--------TTAGGATCA--CGTG-A-T
gi|16 : ggaattaAATAAGGAAACCTCAAGCTTA--AACT-GAGTTATAA-TATATATAGTGTATACTGTACTCTTTG-TATTATTTGTAA-TG---ATGCATG-CGC-C--AT-GTAACATT
gi|17 : -TTCCT--AAA-------------ACAGCGGACGATTCGAATCA--CGTG-G-TATAATC-TTT-TG--TG-T-AG--AG-CAA-GCTA--TTGA--GGTA-GGCCA-CGG-AGTTCAAA-CAGGATTT-C----A-TAATG-GAAA--G-cattcatcaca
gi|18 : gtgTTTCA--GGTA-GGTCA-TGA-AGACTAAA-CAGG-TTTCC----A-TAAGG-GAGAG-G-T-TT-T-------------T-TTTTGGGGGGGGGG-GG-AT---TTG----------TAAAGT-ATCTG--CG---ATG----TA---A-T-GTA-C-G-G--T-TAT
gi|19 : gttaTTTCA--GGTA-GGTCAT-GG-AGTTCAAA-CATA-TTTTC----A-TAATG-GAGA--G-GGTC-TA-GCGAA-A----T-TCTT--------GC-TG-AT---TTATTTTTT----TAAAAT-AGCAG--CG---ATG----TA---A-C-ATA-C-G-
gi|2 : gATCTTGGCTCGTATAATAAATATATGAATGAAAAGATATTGATTATTTATTTTTATTTTTGAAAAAGCGTGTGCAAT-GCAGG----G-------------AAAA---TGCATGTACA-----TGTACATGTATACTATATGTAAAA
gi|2 : ttTGTAAAA---TATGTACTCGTAAGTCTTG--------------AAAT----CAAGTA-AATAATTGTACATGT----TATGTGTAAAA-CTTAGTACAAAAAGAAAACCTATTACCATTCAGTGCTAGTTTATCTTTTTATAGCAAAGACCTtatgtactcgtaagtcttgaaatcaagtaaataattgtacatgttatgtgtaaaacttagtacaaaaagaaaacctattaccattcagtgctagtttatctttttatagcaaagaccttttgaaaatgttgttaaaaactacatagatgacccagggaaaaggggatccaaccccaggacacccccctttctctctctctctctctctctcggaattcgccaatgcatatatactgtacatgtgcatgcatgtcgaatagactcttaattaaaattcatgatggtgaagtcgtgtttatgtaccaaaaacagcggacaatgcattaggatcacgtgatttaaccttttgtgtagagtaagctatttcaggtaggtcatggagttcaataatctagtgaaatctttccgatctattatttaaaatatcagcgatgtaacgtacgggcttatcgctgtgcgaaatttaaaagttttcaataaatattaccacaca
gi|2 : ttatcttggctcgtataataaatatatgaatgaaaagatattgattatttatttttatttttgaaaaagcgtgtgcaatgcagggaaaatgcatgtacatgtacatgtatactataAAACTACATA---GATGACCCAGGGAAA-AGGGGATCCAA--CCCCAGGA-CACCCCCCTTTCTCT-CTCTCTCTCTCT-CTCTC------GGAATT--CGCCAATG---CATAT---A-TAC-TGTACATGTGCATGCATGT-CGA-ATA-GACTCTT-AATTAAAA--TTCA-TGA----TGGTGAAG--TCGTGTTT-------AT-GTACC--AAAAACAGCGGACAATGCA--------TTAGGATCA--CGTG-A-TTTAA-CCTTT-TG--TG-T-AG--AG-TAA-GCTA-TTTCA--GGTA-GGTCA-TGG-AGTTCA-----------------A-TAA-------------TC-TA-GTGAA-A------TCTT--------TC-CG-AT---CTA-TTATT----TAAAAT-ATCAG--CG---ATG----TA---A-C-GTA-C-G-GGCT-TATCGCTG-T--G-----------C---GAAATTTA-AAA----G------TTTTCAATAA--ATAT-TACCA---CAtttgaaaatgttgttaaaaactacatagatgacccagggaaaaggggatccaaccccaggacacccccctttctctctctctctctctctctcggaattcgccaatgcatatatactgtacatgtgcatgcatgtcgaatagactcttaattaaaattcatgatggtgaagtcgtgtttatgtaccaaaaacagcggacaatgcattaggatcacgtgatttaaccttttgtgtagagtaagctatttcaggtaggtcatggagttcaataatctagtgaaatctttccgatctattatttaaaatatcagcgatgtaacgtacgggcttatcgctgtgcgaaatttaaaagttttcaataaatattaccacaca
gi|20 : ttatcttggctcgtataataaatatatgaatgaaaagatattgattatttatttttatttttgaaaaagcgtgtgcaatgcagggaaaatgcatgtacatgtacatgtatactatatgtaaaatatgtactcgtaagtcttgaaatcaagtaaataattgtacatgttatgtgtaaaacttagtacaaaaagaaaacctattaccattcagtgctagtttatctttttatagcaaagaccttttgaaaatgttgttaaTATGTACTCGTAAGTCTTGAAATCAGGTCTATAAAAT--TTCAGGTAGAATA-TTGTACATGC----AATGTGTAAAAGTTTAGTACca
gi|21 : tatatgtacaatggtacaaTGATTATTCGTTTTTATTTTTGGAAAAGC
gi|22 : atcT-AACATGAAACAAGAA-AATTTATATTT-ATG-ATATTTTGGAGTCCGTCAGC--ACAT-TGCAATTTCACTTCATCacttgcgatgcagtgaaaatacatgtacctgtatactatgcatactaaacatgttttcataa
gi|23 : tgATTCCTAT-GA-----GAATTTCAGT---TAATGAGGAATCCCAAAGCTTA--AACT-CAG-----A-CTTGTATA----------------GCG-T-----TTGTAA-TG--A
gi|24 : A-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ACCAG--CG---ATG----TA---A-C-GTA-C-G-G--C-TATCACTG-
gi|25 : tgA--GGTA-GATCAT-AG-AGTTCAAA-CAGA-TTG-CT---T-TAATG-GAGAG-G-T-TC-CA-TTAAG-A----T-TTT
gi|26 : TTA------------TAAAAT--TTCAGGTAGAAT---TGTACGTGG----TATGCGTAAAAGTTTAGTAC
gi|27 : TGTTAAT----G-AA-TTGATCT-CAT-GTAAATTCT-AGCATTAACTAAGAACAATTng
gi|28 : -AT-CAT-GTAAATTCA-AGCACAAAACAAGA-----------------AATATACTGGGGGCCG-CGG
gi|3 : TACTCGGTGTCCCAGAGAAA---GGGATCCAATCCCCCTG--ACACCCCTC---CGTCTCCTTTTTTTTCT-CTCTCGGA---A----T--CGCCAATG---CATAT---G-TAC-TGTACATATCCATTCATAC-CGA-ATA-CATTC-T-A-TTAAAAACTCCA-TGA----CGGTGAGGGTCCGTGTTTTAT----GT-TTCCT--AAA-------------GCAA-------TTGGAATCAACTGTG-A-GATAATCT-----G--TG-TTAGTGAG-CAA-GCT-TATCCAAAGGTAAGGTCA--GG-A-TTCAAA-CAGT-TCT-C----AATAATG-GAGAAGG-T-TCCTA-GTGAA------T-TCTT--------G--TG-AT---T-A-TTTTT----TAAAAT-A-CA---CG---ATGT----A---A-C-ATA-C-T-G--C-TATGCCTG-T--A-----------C----AAATTA--AAA----G------TTTTTGATA-T-ATAC-AAACA---CAGCCT--ATTA--TTTAACCGTACG-GT-CA-T-CGAATG--AT--TTTCT-G--CTCTGTGAAAGTGTGGC-ATGGGCCAAATACGTATAGA-----GAATTTCAGT---TAATGAG-AAACCCCAAGCT----AACT-CAG-----AACTTGTATA----------------TTGGT-----TTGTAG-TGCCAATGTA-G-TGCAC--ATG-----ATTAAAAT-----------A------CAAATGTTAAT----GAA--CTG--GT-CAT-GTAAATTCT-AGCATGAAACATGGC-CATTTCTCTTC-A
gi|4 : cCAATGGAACATATACTG-TA--TATACAT--TCATAAAT---CAA-ATA-CACTC-T-G-TT------TT-------------TGAGG--CAGTG-------------------------------------CA--------TCTGAATCA--TGTG-A-TATAATCTCTT--G--TA-T-AG--AG-CGA-GCTATTC-CA--GGTA-GGTCAT-GG-AGTTCAAA-CAGG-TTT-CC---A-TTGTA-GAGA--GGC-TC-TA-GTAAC-A----T-TTTT--------GC-TA-ATCGTTTT-TTTTT----TTAAGT-ATCAG--TG---ATAT---AAGGTA-CAGTA-C-A-G--T-CATCACCA-T--A-----------C---GAAATTA--AAAA---G------TTTTTGATAAT-ATAC-AAACA---CAACCTGATTGA--TTTAACTATACC-TA-CT-TGCAGGCAC-AT-ATTTCCAG--ATCTGTTAAAGTATGAA-CAGGGCTAAATGCCTAC-GA-----GAACATCAGT---TAATGAGGAAACTTCAAGCTTA--AACT-TGG-----A-GTTATATA----------------CTG-T-----TTGTTG-TG--AATGTATG-CGC-C--A-AGTAACATTTAAAT--CATAAAAGTA------CAAATGCTATT----GAA--TTGA-AT-CAT-GTAAATTTT-AACATGAAACAAGAA-AATTTATATTT-ATGAATATATTGGGGGCTGTCAGCATGCAT---CCATTT
gi|5 : -TTCCT--AAA-------------GCA--------TTGGAATCA--CGTG-A-TTTAATC-------------------G-CAA-GCTATCT-CA--GGTA-GGTCAT-GG-GGTTCATA-CAGG-TTTTC----A-TAATG-GAGA--G-T-TC-T------------------T--------GC-TG-AT---TTA-TTTTT----TAAAAC-ATCAG--CGCGCATGG---TA---ATC-ATA-C-G-G--CCTATCGCTGGT--AATCATGGAGATC---GAAATAT--GAC----AGGTGTATTTTTGATA-T-ATACCAAACATCACAGCCTGAATTATTTTTAACCGTATGATCTCT-T-CGAATATGATGGTTTCTAGCTCTCCTTAAAAGTGTGGGACGAGGCCAAA-------------------TTCAGTATCTAATGAGGAAACCTCAAGCTTAAGAGCTACAG-----A-CTTATATA----------------TTG-T-----TTTTAG-TG---ATGTATGCCGC-C--AT-GTAACTTTGAAATACCATGAAAGTA------CAATTGTTAATCCGCA-A--CAGA-ATACATCGT-AATTCT-AGTACGAAACGAGAA-AATTTATTTTT-ATa
gi|6 : -TTT-C----A-TAATG-GAGA--GGT-TC-TA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ACGTAA-TA---A-C-GTA-C-G-G--C-TATCACTG-C--A-----------C---GGAATTT--AAAA---G------TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TGCAACCGTACG-TT-CTCT-CGAATAT-AT-GTTTCTAG--CTCTGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATGTCAGT---TAATGAGGAAACCCCAAGCTTA--AACG-CAG-----A-CTTATATA----------------TCG-T-----TT-TAG-TG--AATGTATG-CGC-C--AT-GTAACATTGAAAT--CATGAAAGTACAATTGCAAATGTTAATA---A-A--CTGA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-AATTTGTTTTT-ATAAATCTACTGGGGGCCG-CGGC--GCAT-AACCATTTCTCTTCA
gi|7 : ggt-TAATT-GAGA--G-G-TC-CAAGTGCA-A----T-TATT--------GC-TA-AT---TTA-GTTTT----AAACAT-ATCAG--CG---ATGT----A---A-C-GTA-C-G-A--C-TATCGGTG-T--A-----------T---GGAATTT--AAC----G------TTTTTGATAAT-ATAC-A-----------CT--------TTTAACCATGTG-TT-CTCT-CGAATAT-AC-GTTTCTAG--CTCCATGAAAGTGGGGG-CGGGGCCAAATACCTAT-GATATGAGAACTTCAGC---TAACGAGGAAACCCCAAGCTTA--AGCT-CAG-----A-CTTATTTA----------------TCG-T-----TTCTTGTTA--AATTT-CG-TGC-C--AT-GTGACATTGAAAT--CATAAAATTA------CAAATGTTAAT----GAA--CTGA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-CATTTGTTTTTGATAAATATAATGGGGGCGC-CTGC--ACAT-AGCCATTTCTCTACA
gi|8 : CAA--CCT-TGGAAAACCTCCT---CACC-CTTTTTTTTTATTCTCTCTACGGAA----TTTCGCCAA-A---AATGT--TGCTACCTGTACATGTACATGCATGTGCGAGAGAGCGACC-T-AAATAAAG--TTCAATGAATCACGGTGAGG--TCGT--TTGGAATGAAT-GTTATGAAAA-------------GGAG-------TTGAAATCA--GGTGCACTATAATATTTAATGAATGCT-AG--AAACAACGTTA----------------CATTGGGAGTTCAAA-CAG---TT-A----A-GAACGCGAGA--G-G-TT-T--GTGAA-AAAAAT-TCTT--------GC-TG-AT---TTA-TTTTTTTTGTTAAATAATCAGTCTG---ATGCACATA---A-T-GTATC-G-G--C-TATCGCTG-TAAA-----------CGGAGAGATTTAGAAA----A------TTTTTAATAATAATAC-
gi|9 : TACATGCTAGGTGTCCCAGAGAAA-AGGGGATTCAA--CGCCTGG---ACCCCCC---CCCC-C-----CTTTAT-CTCTC------GGAATT--CGCCAATG---TATATACTG-TA--CGTACATGTTCATGCATAT-CGA-ATA-TATTC-T-AA-TAAAG--TCCA-TGA----CGGTAAGG--TCATGTTT-------ATGTTCCT--AAA-------------GCA--------TTGGAATCA--TGTG-A-TACAATC-TTA-TG--TG-T-AG--AG-CAA-GCTA-TCTCG--GGTT-GGTCA-TGG-AGTTCAAA-CAGG-TTT-tataaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATTATCGATATAAGGTAGTTATATATCGCCATACAAAATTAAATTCCTCTTTTTAAATATACTGTCCAAGTTATTCAATTAACTGTACCTACTGTCAGTCATGTTTCTTGATTTGTGCCTAGGGAAATATTAGCTAATGATGAAACCCTCAAG
Alignments
lowQualScore : 11 22222 222 222 4444444444444 11111 2222222222 1111 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 11 1 111 111 111 33333 1111 22222222222 5555555555555555555555555 111111 1111 22 111111 111111 11111111 22222 222222222222222222 111111111 111 1 11111 44444444444444444444 11111 111111 1 11
lowQualScore : 88 77777 111 1 1 888 3 0 1111111111111 55555 1 9999999999 4444 2 1 1 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 3 555 11 5 444 1 8 3 0 444 8 6 000 88888 5 777 8888 5 5 0 5 5 33 0 888 0 5 2222 77 1 33333333333 66 66 2222222222222222222222222 66 4 4 999999 66 8 66 4 4 5555 44 3 3 33 3 3 77 999999 2 333333 3 55 1 2 6666 2 44444444 3 3 555 33 6666 2 666 777 33333 555 2 2 2 555 44 3 0 3 555555555555555555 4 111111111 3 4 4 777 000 77 8888 1 5 99 77 77 1 77 22 5 22222 1 888 66 5 55555555555555555555 5 22222 5 4 5 66 0 5 5 888 7 77 666666 66 5 5 0 4 4 4 4 1 4 2 4 0 1 2 99 00
lowQualScore : .. ..... ... . . ... . . ............. ..... . .......... .... . . . . .................................................................................... . . ... .. . ... . . . . ... . . ... ..... . ... .... . . . . . .. . ... . . .... .. . ........... .. .. ......................... .. . . ...... .. . .. . . .... .. . . .. . . .. ...... . ...... . .. . . .... . ........ . . ... .. .... . ... ... ..... ... . . . ... .. . . . .................. . ......... . . . ... ... .. .... . . .. .. .. . .. .. . ..... . ... .. . .................... . ..... . . . .. . . . ... . .. ...... .. . . . . . . . . . . . . . . .. ..
lowQualScore : 55 00000 000 0 2 000 2 8 5555555555555 22222 0 8888888888 2222 5 0 0 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 888 00 4 000 0 0 8 6 000 0 7 000 44444 7 444 9999 7 7 4 7 7 44 1 333 4 7 1111 99 4 00000000000 11 11 2222222222222222222222222 11 4 0 999999 11 9 11 4 4 1111 22 1 1 88 1 1 11 444444 9 888888 1 44 5 9 1111 9 22222222 1 1 444 88 1111 9 444 999 99999 000 9 9 9 111 22 1 4 6 111111111111111111 0 111111111 8 0 0 888 777 99 4444 4 7 33 44 99 4 44 22 0 55555 0 888 99 0 66666666666666666666 0 55555 0 5 0 99 1 7 7 888 9 99 444444 99 0 0 8 4 4 4 0 2 0 6 4 4 4 7 22 22
consensus : ATCTTGGCTCGTATAGTAAATATATGAATGAAAAGATATTGATTATTNATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTG------------TAAAAT--TTCAGGTA---GAATA-CTGTACATG----CTATGCGTAAAAGTTTAGTACAGAAAGAAAACCCATCACCATTCAGTGCTAGTTNATCTTNCTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAA-AGGGGATCCAA--CCCCTGGAACACCCCCC---CNCC-CTTTTTTTTTAT---CTCT-CGGAATT-CGCCAATG---CATAT---G-TAC-TGTACATGTNCATGCATG--T-CGA-ATA-CACTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--TCGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-TA--GAG-CAA-GCTATTTTC--A-GGT-AGGTCATTGG-AGTTCAAA-CAGG-TTT-C----ATAATG-GAGA--G-T-T-CTA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ATGT---TA---A-C-GTA-C-G-G--C-TATCGCTG-T--A-----------C---GAAATTTA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGTACG-TC-CT-T-CGAATAT-AT-GTTTCTAG--CTCCGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AACT-CAG--------------------ACT-TA-----TATATC-GTTTGTAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATNTTT-ATGAATATACTGGGGGCCG-CGGC--GCAT-AGCCATTTCTCTTCATC
Reference ( family-1506 ) : ATCTTGGCTCGTATAGTAAATATATGAATGAAAAGATATTGATTATTNATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTG------------TAAAAT--TTCAGGTA---GAATA-TTGTACATG----CTATGCGTAAAAGTTTAGTACAGAAAGAAAACCCATCACCATTCAGTGCTAGTTNATCTTNCTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAA-AGGGGATCCAA--CCCCTGGAACACCCCCC---CNCC-CTTTTTTTTTAT---CTCT-CGGAATT-CGCCAATG---CATAT--CG-TAC-TGTACATGTNCATGCATG--T-CGA-ATA-CACTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--TCGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-TA--GAG-CAA-GCTATTTTC--A-GGT-AGGTCATTGG-AGTTCAAA-CAGG-TTT-C----ATAATG-GAGA--G-T-T-CTA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ATGT---TA---A-C-GTA-C-G-G--C-TATCGCTG-T--A-----------C---GAAATTTA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGTACG-TC-CT-T-CGAATAT-AT-GTTTCTAG--CTCCGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AACT-CAG--------------------ACT-TA-----TATATC-GTTTGTAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATNTTT-ATGAATATACTGGGGGCCG-CGGC--GCAT-AGCCATTTCTCTTCATC
gi|1 : ATCTTGGCTCATATAG--AATA-----ATGAAA---TATTGATTATTGATTTTTATTTTTGAAATA-TATATGTACTCGTAAGTCTTG------------TAAAATAGTTCAGGTA----AATC-CTGTACATG----CAATGCGTAAAAGTTTATTTCAGAAAGAAAATCCATCACCATTCAGTGCTAGTTAATTTTGCTA-AGCAAAGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAAGATGGGATC-AA--CCCCTGGAACACCTCCC---CACT-TTTTTTTTTTAT------T-C----TT-CGCCAATG---CATAT--CA-TA--TATACATTTCCATGCATA--T-CGA-ATA-CATTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--ACGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-TA--GAG-CAA-GCTGTTTTC--A-GGT-AGGTCATTGG-AGTTCAAA-CAGG-TTT-C----ATAATG-GAGA--G-T-T-CTA-GTGGA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCA---CGC--ATGT---TA---A-C-ATA-C---G--C-TATCGCTG-T--A-----------C---GAAATTT--AAT---T-----TTTTTGAT-AT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGGACG-TC-AT-T-CGAATAT-AT-GTTTCTA---CTCTGTAAAAGTGTGGA-CGGGGTCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AATT-CAG--------------------ACT-TA-----TATATC-GTTTATAG-TG--AATGTATG-CGC-CATATGTTAACATT-AAAT--CATGCAAGTA------CAAATGTTAAT--G--A-CAGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATGTTT-ATAAATTTACT-GGGCCCG-CATT--GCAT-AG-CA-TTATCTTCATC
gi|10 : TTC--AAGGT-AGGTTGT-GG-AGTTCTTATCAGG-TTT-TCAGAAAAATG-GAGAT-G-T-A-TTA-GTTAA-A----TATTTTA-------GCGTA-AT---TT---TTGT----TAAAAT-ATCAT--CG---A-------A---A-C-G-A-C-TTG--C--ACCTTTG-TCAA-----------A---GAAAATTA-AAAATGG-----CCTTTAATGAT-ATAC-AAACA---TA
gi|12 : tccgataatatgatcgaatacattgttttgaaagaTA-TTCCT------AAAT-ACCAT--CG---ATAT---GG---G---GTA-C-A-A--T-TATCATCA-A--G-----------C---GTAATTAA-AAA---G-----TTTTT-ATGGT-ACAC-AGATG---C-GACTG---TA--CATA--CTTGCG-CC-CT-T-C--------T-ATTTCCAG--ATCTGTAAAAA---------------------TAT-GA-----GAAATTCAGC---TAAGGAGGAAACCCCAatg
gi|13 : -TATAATCTTTT--G--TT-CA--TAG-CA--GATATTC-C--G-GGT-ATATTACTA----TTCAAA-CAGATTTT-C----AT-ATG-GGGG--G-C-T-CTA-GAAAATA----T-TTTT--------GC-TATAT---TT--TTTTT----T-AATT-ATCAC--CG---ATTC---CG---A-T-GTA-CAG-G--T-TATC
gi|14 : ---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AAACAGA-AT-CAT-GTAAATTCTTAGCACGAAGCGAGAA-AATTTATTTTT-ATGAATATACTGGGGGCCA-CATT--GCATAAGCCATTTCTCTTCAcgccaaattaaa
gi|15 : GGAATT-AGCCAATG---CATAT------AC-T----------ATGCATG--C-CGA-ATA-CACTC-TTAATTGAAA--TTCA-TGA----CAGTGAAG--TCGTGTT---T-------AT-GTTCC--AAATGCAGCGGACAATGC-A--------TTAGGATCA--CGTG-A-T
gi|16 : AATAAGGAAACCTCAAGCTTA--AACT-GAGTTATAATATATATAGTGTATACTGTACTCTTTGTATT-ATTTGTAA-TG--A-TGCATG-CGC-CATG---TAACATT
gi|17 : -TTCCT--AAA-------------AC-AGCGGACGATTCGAATCA--CGTG-G-TATAATC-TTT-TG--TG-TA--GAG-CAA-GCTA--TTG--A-GGT-AGGCCA-CGG-AGTTCAAA-CAGGATTT-C----ATAATG-GAAA--G-cattcatcaca
gi|18 : gtgTTTC--A-GGT-AGGTCA-TGA-AGACTAAA-CAGG-TTTCC----ATAAGG-GAGAG-G-T-T-TT-------------T-TTTTGGGGGGGGGG-GG-AT---TTG----------TAAAGT-ATCTG--CG---ATG----TA---A-T-GTA-C-G-G--T-TAT
gi|19 : gttaTTTC--A-GGT-AGGTCAT-GG-AGTTCAAA-CATA-TTTTC----ATAATG-GAGA--G-GGT-CTA-GCGAA-A----T-TCTT--------GC-TG-AT---TTATTTTTT----TAAAAT-AGCAG--CG---ATG----TA---A-C-ATA-C-G-
gi|2 : gATCTTGGCTCGTATAATAAATATATGAATGAAAAGATATTGATTATTTATTTTTATTTTTGAAAAAGCGTGTGCAAT-GCAGG----G-------------AAAA---TGCATGTA---CA-----TGTACATGTATACTATATGTAAAA
gi|2 : ttTGTAAAA---TATGTACTCGTAAGTCTTG--------------AAAT----CAAGTA----AATAATTGTACATG----TTATGTGTAAAA-CTTAGTACAAAAAGAAAACCTATTACCATTCAGTGCTAGTTTATCTTTTTATAGCAAAGACCTtatgtactcgtaagtcttgaaatcaagtaaataattgtacatgttatgtgtaaaacttagtacaaaaagaaaacctattaccattcagtgctagtttatctttttatagcaaagaccttttgaaaatgttgttaaaaactacatagatgacccagggaaaaggggatccaaccccaggacacccccctttctctctctctctctctctctcggaattcgccaatgcatatatactgtacatgtgcatgcatgtcgaatagactcttaattaaaattcatgatggtgaagtcgtgtttatgtaccaaaaacagcggacaatgcattaggatcacgtgatttaaccttttgtgtagagtaagctatttcaggtaggtcatggagttcaataatctagtgaaatctttccgatctattatttaaaatatcagcgatgtaacgtacgggcttatcgctgtgcgaaatttaaaagttttcaataaatattaccacaca
gi|2 : ttatcttggctcgtataataaatatatgaatgaaaagatattgattatttatttttatttttgaaaaagcgtgtgcaatgcagggaaaatgcatgtacatgtacatgtatactataAAACTACATA---GATGACCCAGGGAAA-AGGGGATCCAA--CCCCAGG-ACACCCCCCTTTCTCT-CTCTCTCTCTCT---CTCT-CGGAATT-CGCCAATG---CATAT---A-TAC-TGTACATGTGCATGCATG--T-CGA-ATA-GACTCTT-AATTAAAA--TTCA-TGA----TGGTGAAG--TCGTGTT---T-------AT-GTACC--AAAAACAGCGGACAATGC-A--------TTAGGATCA--CGTG-A-TTTAA-CCTTT-TG--TG-TA--GAG-TAA-GCTA-TTTC--A-GGT-AGGTCA-TGG-AGTTCA-----------------ATAA-------------T-CTA-GTGAA-A------TCTT--------TC-CG-AT---CTA-TTATT----TAAAAT-ATCAG--CG---ATG----TA---A-C-GTA-C-G-GGCT-TATCGCTG-T--G-----------C---GAAATTTA-AAA---G-----TTTTCAATAA--ATAT-TACCA---CAtttgaaaatgttgttaaaaactacatagatgacccagggaaaaggggatccaaccccaggacacccccctttctctctctctctctctctctcggaattcgccaatgcatatatactgtacatgtgcatgcatgtcgaatagactcttaattaaaattcatgatggtgaagtcgtgtttatgtaccaaaaacagcggacaatgcattaggatcacgtgatttaaccttttgtgtagagtaagctatttcaggtaggtcatggagttcaataatctagtgaaatctttccgatctattatttaaaatatcagcgatgtaacgtacgggcttatcgctgtgcgaaatttaaaagttttcaataaatattaccacaca
gi|20 : ttatcttggctcgtataataaatatatgaatgaaaagatattgattatttatttttatttttgaaaaagcgtgtgcaatgcagggaaaatgcatgtacatgtacatgtatactatatgtaaaatatgtactcgtaagtcttgaaatcaagtaaataattgtacatgttatgtgtaaaacttagtacaaaaagaaaacctattaccattcagtgctagtttatctttttatagcaaagaccttttgaaaatgttgttaaTATGTACTCGTAAGTCTTGAAATCAGGTCTATAAAAT--TTCAGGTA---GAATA-TTGTACATG----CAATGTGTAAAAGTTTAGTACca
gi|21 : tatatgtacaatggtacaaTGATTATTCGTTTTTATTTTTGGAAAAGC------ACTTGCGA-TGCAG------------TGAAAA--TACATGTACCTGTATA-CTATGCATA----CTA
gi|22 : atcT-AACATGAAACAAGAA-AATTTATATTT-ATG-ATATTTTGGAGTCCGTCAGC--ACAT-TGCAATTTCACTTCATCaacatgttttcataa
gi|23 : tgATTCCTAT-GA-----GAATTTCAGT---TAATGAGGAATCCCAAAGCTTA--AACT-CAG--------------------ACT-TG-----TATAGC-GTTTGTAA-TG--A
gi|24 : A-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ACCAG--CG---ATG----TA---A-C-GTA-C-G-G--C-TATCACTG-
gi|25 : tg--A-GGT-AGATCAT-AG-AGTTCAAA-CAGA-TTG-CT---TTAATG-GAGAG-G-T-T-CCA-TTAAG-A----T-TTT
gi|26 : TTA------------TAAAAT--TTCAGGTA---GAAT---TGTACGTG----GTATGCGTAAAAGTTTAGTACNG
gi|27 : TGTTAAT--G-AA-TTGATCT-CAT-GTAAATTCT-AGCATTAACTAAGAACAATT
gi|28 : -AT-CAT-GTAAATTCA-AGCACAAAACAAGA-----------------AATATACTGGGGGCCG-CGG
gi|3 : TACTCGGTGTCCCAGAGAAA---GGGATCCAATCCCCCTG--ACACCCCTC---CGTCTCCTTTTTTTTCT---CTCT-CGGAAT--CGCCAATG---CATAT---G-TAC-TGTACATATCCATTCATA--C-CGA-ATA-CATTC-T-A-TTAAAAACTCCA-TGA----CGGTGAGGGTCCGTGTTTTAT-------GT-TTCCT--AAA-------------GCAA--------TTGGAATCAACTGTG-A-GATAATC-----TG--TGTTAGTGAG-CAA-GCT-TATCCAAA-GGTAAGGTCA--GG-A-TTCAAA-CAGT-TCT-CA---ATAATG-GAGAAGG-T-TCCTA-GTG-A-A----T-TCTT--------G--TG-A----TTA-TTTTT----TAAAAT-A-CA---CG---ATG----TA---A-C-ATA-C-T-G--C-TATGCCTG-T--A-----------C---AAA--TTA-AAA---G-----TTTTTGAT-AT-ATAC-AAACA---CAGCCT--ATTA--TTTAACCGTACG-GT-CA-T-CGAATG--AT--TTTCT-G--CTCTGTGAAAGTGTGGC-ATGGGCCAAATACGTATAGA-----GAATTTCAGT---TAATGA-GAAACCCCAAGCT----AACT-CAGA-------------------ACT-TG-----TATATTGGTTTGTAG-TGCCAATGTA-G-TGCACATG-------ATT-----------AAAATA------CAAATGTTAAT--G-AA-CTG--GT-CAT-GTAAATTCT-AGCATGAAACATGGC-CATTTCTCTTC-A
gi|4 : cCAATGGAACATAT------AC-TGTATAT--ACATTCATAAAT-CAA-ATA-CACTC-T-GTTT-----------T---------TGAGG--CAGTG----------------------------------------C-A--------TCTGAATCA--TGTG-A-TATAATCTCTT--G--TA-TA--GAG-CGA-GCTATTC-C--A-GGT-AGGTCAT-GG-AGTTCAAA-CAGG-TTT-CC---ATTGTA-GAGA--GGC-T-CTA-GTAAC-A----T-TTTT--------GC-TA-ATCGTTTT-TTTTT----TTAAGT-ATCAG--TG---ATAT---AAGGTA-CAGTA-C-A-G--T-CATCACCA-T--A-----------C---GAAATTAA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAACCTGATTGA--TTTAACTATACC-TA-CT-TGCAGGCAC-AT-ATTTCCAG--ATCTGTTAAAGTATGAA-CAGGGCTAAATGCCTAC-GA-----GAACATCAGT---TAATGAGGAAACTTCAAGCTTA--AACT-TGG--------------------AGT-TA-----TATACT-GTTTGTTG-TG--AATGTATG-CGC-CAAG---TAACATTTAAAT--CATAAAAGTA------CAAATGCTATT--G-AA-TTGA-AT-CAT-GTAAATTTT-AACATGAAACAAGAA-AATTTATATTT-ATGAATATATTGGGGGCTGTCAGCATGCAT---CCATTT
gi|5 : -TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TTTAATC------------------G-CAA-GCTATCT-C--A-GGT-AGGTCAT-GG-GGTTCATA-CAGG-TTTTC----ATAATG-GAGA--G-T-T-CT------------------T--------GC-TG-AT---TTA-TTTTT----TAAAAC-ATCAG--CGCGCATGG---TA---ATC-ATA-C-G-G--CCTATCGCTGGT--AATCATGGAGATC---GAAATATG-ACA---GGTGTATTTTTGATA-T-ATACCAAACATCACAGCCTGAATTATTTTTAACCGTATGATCTCT-T-CGAATATGATGGTTTCTAGCTCTCCTTAAAAGTGTGGGACGAGGCCAAA-------------------TTCAGTATCTAATGAGGAAACCTCAAGCTTAAGAGCTACAG--------------------ACT-TA-----TATATT-GTTTTTAG-TG---ATGTATGCCGC-CATG---TAACTTTGAAATACCATGAAAGTA------CAATTGTTAATCCGCAA-CAGA-ATACATCGT-AATTCT-AGTACGAAACGAGAA-AATTTATTTTT-ATa
gi|6 : -TTT-C----ATAATG-GAGA--GGT-T-CTA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ACGTAA-TA---A-C-GTA-C-G-G--C-TATCACTG-C--A-----------C---GGAATTTA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TGCAACCGTACG-TT-CTCT-CGAATAT-AT-GTTTCTAG--CTCTGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATGTCAGT---TAATGAGGAAACCCCAAGCTTA--AACG-CAG--------------------ACT-TA-----TATATC-GTTT-TAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTACAATTGCAAATGTTAAT--A-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-AATTTGTTTTT-ATAAATCTACTGGGGGCCG-CGGC--GCAT-AACCATTTCTCTTCA
gi|7 : ggtTAATT-GAGA--G-G-T-CCAAGTGCA-A----T-TATT--------GC-TA-AT---TTA-GTTTT----AAACAT-ATCAG--CG---ATGT----A---A-C-GTA-C-G-A--C-TATCGGTG-T--A-----------T---GGAATTTA-AC----G-----TTTTTGATAAT-ATAC-A-----------CT--------TTTAACCATGTG-TT-CTCT-CGAATAT-AC-GTTTCTAG--CTCCATGAAAGTGGGGG-CGGGGCCAAATACCTAT-GATATGAGAACTTCAGC---TAACGAGGAAACCCCAAGCTTA--AGCT-CAG--------------------ACT-TA-----TTTATC-GTTTCTTGTTA--AATTT-CG-TGC-CATG---TGACATTGAAAT--CATAAAATTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-CATTTGTTTTTGATAAATATAATGGGGGCGC-CTGC--ACAT-AGCCATTTCTCTACA
gi|8 : CAA--CCT-TGGAAAACCTCCT---CACC-CTTTTTTTTTATTCTCTCTACGGAATTTCGCCAA-A---AATGT--TGCTACCTGTACATGTACATGCATG--TGCGAGAGAGCGACC-T-AAATAAAG--TTCAATGAATCACGGTGAGG--TCGT--T---TGGAATGAAT-GTTATGAAAA-------------GG-AG-------TTGAAATCA--GGTGCACTATAATATTTAATGAATGCTA--GAAACAACGTTA-----------------CATTGGGAGTTCAAA-CAG---TT-A----AGAACGCGAGA--G-G-T-TT--GTGAA-AAAAAT-TCTT--------GC-TG-AT---TTA-TTTTTTTTGTTAAATAATCAGTCTG---ATGCACATA---A-T-GTATC-G-G--C-TATCGCTG-TAAA-----------CGGAGAGATTTAGAAA---A-----TTTTTAATAATAATAC-
gi|9 : TACATGCTAGGTGTCCCAGAGAAA-AGGGGATTCAA--CGCCTGG---ACCCCCC---CCCC-C-----CTTTAT---CTCT-CGGAATT-CGCCAATG---TATATACTG-TAC--GTACATGTTCATGCATA--T-CGA-ATA-TATTC-T-AA-TAAAG--TCCA-TGA----CGGTAAGG--TCATGTT---T-------ATGTTCCT--AAA-------------GC-A--------TTGGAATCA--TGTG-A-TACAATC-TTA-TG--TG-TA--GAG-CAA-GCTA-TCTC--G-GGT-TGGTCA-TGG-AGTTCAAA-CAGG-TTT-tataaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATTATCGATATAAGGTAGTTATATATCGCCATACAAAATTAAATTCCTCTTTTTAAATATACTGTCCAAGTTATTCAATTAACTGTACCTACTGTCAGTCATGTTTCTTGATTTGTGCCTAGGGAAATATTAGCTAATGATGAAACCCTCAAG
Alignments
lowQualScore : 11 22222 222 222 4444444444444 11111 2222222222 1111 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 11 11 111 111 11111111111 1111 22222222222 5555555555555555555555555 111111 1111 22 111111 111111 11111111 22222 222222222222222222 111111111 111 1 11111 44444444444444444444 11111 111111 1 11
lowQualScore : 88 77777 111 1 1 888 3 0 1111111111111 55555 1 9999999999 4444 2 1 1 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 3 555 11 11 444 1 8 3 0 444 8 6 5 77777777777 5 777 8888 5 5 0 5 55 1 0 888 0 5 2222 77 1 33333333333 66 66 2222222222222222222222222 66 4 4 999999 66 8 66 4 4 5555 44 3 3 33 3 3 77 999999 2 333333 3 55 1 2 6666 2 44444444 3 3 555 33 6666 2 666 777 33333 555 2 2 2 555 44 3 0 3 555555555555555555 4 111111111 3 4 4 777 000 77 8888 1 5 99 77 77 1 77 22 5 22222 1 888 66 5 55555555555555555555 5 22222 5 4 5 66 0 5 5 888 7 77 666666 66 5 5 0 4 4 4 4 1 4 2 4 0 1 2 99 00
lowQualScore : .. ..... ... . . ... . . ............. ..... . .......... .... . . . . .................................................................................... . . ... .. .. ... . . . . ... . . . ........... . ... .... . . . . .. . . ... . . .... .. . ........... .. .. ......................... .. . . ...... .. . .. . . .... .. . . .. . . .. ...... . ...... . .. . . .... . ........ . . ... .. .... . ... ... ..... ... . . . ... .. . . . .................. . ......... . . . ... ... .. .... . . .. .. .. . .. .. . ..... . ... .. . .................... . ..... . . . .. . . . ... . .. ...... .. . . . . . . . . . . . . . . .. ..
lowQualScore : 55 00000 000 0 2 000 2 8 5555555555555 22222 0 5555555555 2222 5 0 0 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 888 00 22 000 0 0 8 6 000 0 7 7 33333333333 7 444 9999 7 7 4 7 99 7 1 333 4 7 1111 99 4 00000000000 11 11 2222222222222222222222222 11 4 0 999999 11 9 11 4 4 1111 22 1 1 88 1 1 11 444444 9 888888 1 44 5 9 1111 9 22222222 1 1 444 88 1111 9 444 999 99999 000 9 9 9 111 22 1 4 6 111111111111111111 0 111111111 8 0 0 888 777 99 4444 4 7 33 44 99 4 44 22 0 55555 0 888 99 0 66666666666666666666 0 55555 0 5 0 99 1 7 7 888 9 99 444444 99 0 0 8 4 4 4 0 2 0 6 4 4 4 7 22 22
consensus : ATCTTGGCTCGTATAGTAAATATATGAATGAAAAGATATTGATTATTNATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTG------------TAAAAT--TTCAGGTA---GAATA-CTGTACATG----CTATGCGTAAAAGTTTAGTACAGAAAGAAAACCCATCACCATTCAGTGCTAGTTNATCTTNCTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAA-AGGGGATCCAA--CCCCTGGAACACCCCCC---CNCC-CTTTTTTTTTAT---CTCT-CGGAATT-CGCCAATGCA-TA---T-GT----AC-TGTACATGTNCATGCATG--T-CGA-ATA-CACTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--TCGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-TA--GAG-CAA-GCTATTTTC--A-GGT-AGGTCATTGG-AGTTCAAA-CAGG-TTT-C----ATAATG-GAGA--G-T-T-CTA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ATGT---TA---A-C-GTA-C-G-G--C-TATCGCTG-T--A-----------C---GAAATTTA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGTACG-TC-CT-T-CGAATAT-AT-GTTTCTAG--CTCCGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AACT-CAG--------------------ACT-TA-----TATATC-GTTTGTAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATNTTT-ATGAATATACTGGGGGCCG-CGGC--GCAT-AGCCATTTCTCTTCATC
Reference ( family-1506 ) : ATCTTGGCTCGTATAGTAAATATATGAATGAAAAGATATTGATTATTNATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTG------------TAAAAT--TTCAGGTA---GAATA-CTGTACATG----CTATGCGTAAAAGTTTAGTACAGAAAGAAAACCCATCACCATTCAGTGCTAGTTNATCTTNCTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAA-AGGGGATCCAA--CCCCTGGAACACCCCCC---CNCC-CTTTTTTTTTAT---CTCT-CGGAATT-CGCCAATGCA-TA---T-GT----AC-TGTACATGTNCATGCATG--T-CGA-ATA-CACTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--TCGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-TA--GAG-CAA-GCTATTTTC--A-GGT-AGGTCATTGG-AGTTCAAA-CAGG-TTT-C----ATAATG-GAGA--G-T-T-CTA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ATGT---TA---A-C-GTA-C-G-G--C-TATCGCTG-T--A-----------C---GAAATTTA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGTACG-TC-CT-T-CGAATAT-AT-GTTTCTAG--CTCCGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AACT-CAG--------------------ACT-TA-----TATATC-GTTTGTAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATNTTT-ATGAATATACTGGGGGCCG-CGGC--GCAT-AGCCATTTCTCTTCATC
gi|1 : ATCTTGGCTCATATAG--AATA-----ATGAAA---TATTGATTATTGATTTTTATTTTTGAAATA-TATATGTACTCGTAAGTCTTG------------TAAAATAGTTCAGGTA----AATC-CTGTACATG----CAATGCGTAAAAGTTTATTTCAGAAAGAAAATCCATCACCATTCAGTGCTAGTTAATTTTGCTA-AGCAAAGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAAGATGGGATC-AA--CCCCTGGAACACCTCCC---CACT-TTTTTTTTTTAT------T-C----TT-CGCCAATGCA-TA---TCAT----A--TATACATTTCCATGCATA--T-CGA-ATA-CATTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--ACGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-TA--GAG-CAA-GCTGTTTTC--A-GGT-AGGTCATTGG-AGTTCAAA-CAGG-TTT-C----ATAATG-GAGA--G-T-T-CTA-GTGGA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCA---CGC--ATGT---TA---A-C-ATA-C---G--C-TATCGCTG-T--A-----------C---GAAATTT--AAT---T-----TTTTTGAT-AT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGGACG-TC-AT-T-CGAATAT-AT-GTTTCTA---CTCTGTAAAAGTGTGGA-CGGGGTCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AATT-CAG--------------------ACT-TA-----TATATC-GTTTATAG-TG--AATGTATG-CGC-CATATGTTAACATT-AAAT--CATGCAAGTA------CAAATGTTAAT--G--A-CAGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATGTTT-ATAAATTTACT-GGGCCCG-CATT--GCAT-AG-CA-TTATCTTCATC
gi|10 : TTC--AAGGT-AGGTTGT-GG-AGTTCTTATCAGG-TTT-TCAGAAAAATG-GAGAT-G-T-A-TTA-GTTAA-A----TATTTTA-------GCGTA-AT---TT---TTGT----TAAAAT-ATCAT--CG---A-------A---A-C-G-A-C-TTG--C--ACCTTTG-TCAA-----------A---GAAAATTA-AAAATGG-----CCTTTAATGAT-ATAC-AAACA---TA
gi|12 : tccgataatatgatcgaatacattgttttgaaagaTA-TTCCT------AAAT-ACCAT--CG---ATAT---GG---G---GTA-C-A-A--T-TATCATCA-A--G-----------C---GTAATTAA-AAA---G-----TTTTT-ATGGT-ACAC-AGATG---C-GACTG---TA--CATA--CTTGCG-CC-CT-T-C--------T-ATTTCCAG--ATCTGTAAAAA---------------------TAT-GA-----GAAATTCAGC---TAAGGAGGAAACCCCAatg
gi|13 : -TATAATCTTTT--G--TT-CA--TAG-CA--GATATTC-C--G-GGT-ATATTACTA----TTCAAA-CAGATTTT-C----AT-ATG-GGGG--G-C-T-CTA-GAAAATA----T-TTTT--------GC-TATAT---TT--TTTTT----T-AATT-ATCAC--CG---ATTC---CG---A-T-GTA-CAG-G--T-TATC
gi|14 : ---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AAACAGA-AT-CAT-GTAAATTCTTAGCACGAAGCGAGAA-AATTTATTTTT-ATGAATATACTGGGGGCCA-CATT--GCATAAGCCATTTCTCTTCAcgccaaattaaa
gi|15 : GGAATT-AGCCAATGCA-TA---T-------AC-T----------ATGCATG--C-CGA-ATA-CACTC-TTAATTGAAA--TTCA-TGA----CAGTGAAG--TCGTGTT---T-------AT-GTTCC--AAATGCAGCGGACAATGC-A--------TTAGGATCA--CGTG-A-T
gi|16 : AATAAGGAAACCTCAAGCTTA--AACT-GAGTTATAATATATATAGTGTATACTGTACTCTTTGTATT-ATTTGTAA-TG--A-TGCATG-CGC-CATG---TAACATT
gi|17 : -TTCCT--AAA-------------AC-AGCGGACGATTCGAATCA--CGTG-G-TATAATC-TTT-TG--TG-TA--GAG-CAA-GCTA--TTG--A-GGT-AGGCCA-CGG-AGTTCAAA-CAGGATTT-C----ATAATG-GAAA--G-cattcatcaca
gi|18 : gtgTTTC--A-GGT-AGGTCA-TGA-AGACTAAA-CAGG-TTTCC----ATAAGG-GAGAG-G-T-T-TT-------------T-TTTTGGGGGGGGGG-GG-AT---TTG----------TAAAGT-ATCTG--CG---ATG----TA---A-T-GTA-C-G-G--T-TAT
gi|19 : gttaTTTC--A-GGT-AGGTCAT-GG-AGTTCAAA-CATA-TTTTC----ATAATG-GAGA--G-GGT-CTA-GCGAA-A----T-TCTT--------GC-TG-AT---TTATTTTTT----TAAAAT-AGCAG--CG---ATG----TA---A-C-ATA-C-G-
gi|2 : gATCTTGGCTCGTATAATAAATATATGAATGAAAAGATATTGATTATTTATTTTTATTTTTGAAAAAGCGTGTGCAAT-GCAGG----G-------------AAAA---TGCATGTA---CA-----TGTACATGTATACTATATGTAAAA
gi|2 : ttTGTAAAA---TATGTACTCGTAAGTCTTG--------------AAAT----CAAGTA----AATAATTGTACATG----TTATGTGTAAAA-CTTAGTACAAAAAGAAAACCTATTACCATTCAGTGCTAGTTTATCTTTTTATAGCAAAGACCTtatgtactcgtaagtcttgaaatcaagtaaataattgtacatgttatgtgtaaaacttagtacaaaaagaaaacctattaccattcagtgctagtttatctttttatagcaaagaccttttgaaaatgttgttaaaaactacatagatgacccagggaaaaggggatccaaccccaggacacccccctttctctctctctctctctctctcggaattcgccaatgcatatatactgtacatgtgcatgcatgtcgaatagactcttaattaaaattcatgatggtgaagtcgtgtttatgtaccaaaaacagcggacaatgcattaggatcacgtgatttaaccttttgtgtagagtaagctatttcaggtaggtcatggagttcaataatctagtgaaatctttccgatctattatttaaaatatcagcgatgtaacgtacgggcttatcgctgtgcgaaatttaaaagttttcaataaatattaccacaca
gi|2 : ttatcttggctcgtataataaatatatgaatgaaaagatattgattatttatttttatttttgaaaaagcgtgtgcaatgcagggaaaatgcatgtacatgtacatgtatactataAAACTACATA---GATGACCCAGGGAAA-AGGGGATCCAA--CCCCAGGA-CACCCCCCTTTCTCT-CTCTCTCTCTCT---CTCT-CGGAATT-CGCCAATGCA-TA---T-AT----AC-TGTACATGTGCATGCATG--T-CGA-ATA-GACTCTT-AATTAAAA--TTCA-TGA----TGGTGAAG--TCGTGTT---T-------AT-GTACC--AAAAACAGCGGACAATGC-A--------TTAGGATCA--CGTG-A-TTTAA-CCTTT-TG--TG-TA--GAG-TAA-GCTA-TTTC--A-GGT-AGGTCA-TGG-AGTTCA-----------------ATAA-------------T-CTA-GTGAA-A------TCTT--------TC-CG-AT---CTA-TTATT----TAAAAT-ATCAG--CG---ATG----TA---A-C-GTA-C-G-GGCT-TATCGCTG-T--G-----------C---GAAATTTA-AAA---G-----TTTTCAATAA--ATAT-TACCA---CAtttgaaaatgttgttaaaaactacatagatgacccagggaaaaggggatccaaccccaggacacccccctttctctctctctctctctctctcggaattcgccaatgcatatatactgtacatgtgcatgcatgtcgaatagactcttaattaaaattcatgatggtgaagtcgtgtttatgtaccaaaaacagcggacaatgcattaggatcacgtgatttaaccttttgtgtagagtaagctatttcaggtaggtcatggagttcaataatctagtgaaatctttccgatctattatttaaaatatcagcgatgtaacgtacgggcttatcgctgtgcgaaatttaaaagttttcaataaatattaccacaca
gi|20 : ttatcttggctcgtataataaatatatgaatgaaaagatattgattatttatttttatttttgaaaaagcgtgtgcaatgcagggaaaatgcatgtacatgtacatgtatactatatgtaaaatatgtactcgtaagtcttgaaatcaagtaaataattgtacatgttatgtgtaaaacttagtacaaaaagaaaacctattaccattcagtgctagtttatctttttatagcaaagaccttttgaaaatgttgttaaTATGTACTCGTAAGTCTTGAAATCAGGTCTATAAAAT--TTCAGGTA---GAATA-TTGTACATG----CAATGTGTAAAAGTTTAGTACca
gi|21 : tatatgtacaatggtacaaTGATTATTCGTTTTTATTTTTGGAAAAGC------ACTTGCGA-TGCAG------------TGAAAA--TACATGTACCTGTATA-CTATGCATA----CTA
gi|22 : atcT-AACATGAAACAAGAA-AATTTATATTT-ATG-ATATTTTGGAGTCCGTCAGC--ACAT-TGCAATTTCACTTCATCaacatgttttcataa
gi|23 : tgATTCCTAT-GA-----GAATTTCAGT---TAATGAGGAATCCCAAAGCTTA--AACT-CAG--------------------ACT-TG-----TATAGC-GTTTGTAA-TG--A
gi|24 : A-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ACCAG--CG---ATG----TA---A-C-GTA-C-G-G--C-TATCACTG-
gi|25 : tg--A-GGT-AGATCAT-AG-AGTTCAAA-CAGA-TTG-CT---TTAATG-GAGAG-G-T-T-CCA-TTAAG-A----T-TTT
gi|26 : TTA------------TAAAAT--TTCAGGTA---GAAT---TGTACGTG----GTATGCGTAAAAGTTTAGTACNG
gi|27 : TGTTAAT--G-AA-TTGATCT-CAT-GTAAATTCT-AGCATTAACTAAGAACAATT
gi|28 : -AT-CAT-GTAAATTCA-AGCACAAAACAAGA-----------------AATATACTGGGGGCCG-CGG
gi|3 : TACTCGGTGTCCCAGAGAAA---GGGATCCAATCCCCCTG--ACACCCCTC---CGTCTCCTTTTTTTTCT---CTCT-CGGAAT--CGCCAATGCA-TA---T-GT----AC-TGTACATATCCATTCATA--C-CGA-ATA-CATTC-T--ATTAAAAACTCCA-TGA----CGGTGAGGGTCCGTGTTTTAT-------GT-TTCCT--AAA-------------GCAA--------TTGGAATCAACTGTG-A-GATAATC-----TG--TGTTAGTGAG-CAA-GCT-TATCCAAA-GGTAAGGTCA--GG-A-TTCAAA-CAGT-TCT-CA---ATAATG-GAGAAGG-T-TCCTA-GTG-A-A----T-TCTT--------G--TG-A----TTA-TTTTT----TAAAAT-A-CA---CG---ATG----TA---A-C-ATA-C-T-G--C-TATGCCTG-T--A-----------C---AAA--TTA-AAA---G-----TTTTTGAT-AT-ATAC-AAACA---CAGCCT--ATTA--TTTAACCGTACG-GT-CA-T-CGAATG--AT--TTTCT-G--CTCTGTGAAAGTGTGGC-ATGGGCCAAATACGTATAGA-----GAATTTCAGT---TAATGA-GAAACCCCAAGCT----AACT-CAGA-------------------ACT-TG-----TATATTGGTTTGTAG-TGCCAATGTA-G-TGCACATG-------ATT-----------AAAATA------CAAATGTTAAT--G-AA-CTG--GT-CAT-GTAAATTCT-AGCATGAAACATGGC-CATTTCTCTTC-A
gi|4 : cCAATGGAACA---T-AT----AC-TGTATAT--ACATTCATAAAT-CAA-ATA-CACTC-T-GTTT-----------T---------TGAGG--CAGTG----------------------------------------C-A--------TCTGAATCA--TGTG-A-TATAATCTCTT--G--TA-TA--GAG-CGA-GCTATTC-C--A-GGT-AGGTCAT-GG-AGTTCAAA-CAGG-TTT-CC---ATTGTA-GAGA--GGC-T-CTA-GTAAC-A----T-TTTT--------GC-TA-ATCGTTTT-TTTTT----TTAAGT-ATCAG--TG---ATAT---AAGGTA-CAGTA-C-A-G--T-CATCACCA-T--A-----------C---GAAATTAA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAACCTGATTGA--TTTAACTATACC-TA-CT-TGCAGGCAC-AT-ATTTCCAG--ATCTGTTAAAGTATGAA-CAGGGCTAAATGCCTAC-GA-----GAACATCAGT---TAATGAGGAAACTTCAAGCTTA--AACT-TGG--------------------AGT-TA-----TATACT-GTTTGTTG-TG--AATGTATG-CGC-CAAG---TAACATTTAAAT--CATAAAAGTA------CAAATGCTATT--G-AA-TTGA-AT-CAT-GTAAATTTT-AACATGAAACAAGAA-AATTTATATTT-ATGAATATATTGGGGGCTGTCAGCATGCAT---CCATTT
gi|5 : -TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TTTAATC------------------G-CAA-GCTATCT-C--A-GGT-AGGTCAT-GG-GGTTCATA-CAGG-TTTTC----ATAATG-GAGA--G-T-T-CT------------------T--------GC-TG-AT---TTA-TTTTT----TAAAAC-ATCAG--CGCGCATGG---TA---ATC-ATA-C-G-G--CCTATCGCTGGT--AATCATGGAGATC---GAAATATG-ACA---GGTGTATTTTTGATA-T-ATACCAAACATCACAGCCTGAATTATTTTTAACCGTATGATCTCT-T-CGAATATGATGGTTTCTAGCTCTCCTTAAAAGTGTGGGACGAGGCCAAA-------------------TTCAGTATCTAATGAGGAAACCTCAAGCTTAAGAGCTACAG--------------------ACT-TA-----TATATT-GTTTTTAG-TG---ATGTATGCCGC-CATG---TAACTTTGAAATACCATGAAAGTA------CAATTGTTAATCCGCAA-CAGA-ATACATCGT-AATTCT-AGTACGAAACGAGAA-AATTTATTTTT-ATa
gi|6 : -TTT-C----ATAATG-GAGA--GGT-T-CTA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ACGTAA-TA---A-C-GTA-C-G-G--C-TATCACTG-C--A-----------C---GGAATTTA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TGCAACCGTACG-TT-CTCT-CGAATAT-AT-GTTTCTAG--CTCTGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATGTCAGT---TAATGAGGAAACCCCAAGCTTA--AACG-CAG--------------------ACT-TA-----TATATC-GTTT-TAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTACAATTGCAAATGTTAAT--A-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-AATTTGTTTTT-ATAAATCTACTGGGGGCCG-CGGC--GCAT-AACCATTTCTCTTCA
gi|7 : ggtTAATT-GAGA--G-G-T-CCAAGTGCA-A----T-TATT--------GC-TA-AT---TTA-GTTTT----AAACAT-ATCAG--CG---ATGT----A---A-C-GTA-C-G-A--C-TATCGGTG-T--A-----------T---GGAATTTA-AC----G-----TTTTTGATAAT-ATAC-A-----------CT--------TTTAACCATGTG-TT-CTCT-CGAATAT-AC-GTTTCTAG--CTCCATGAAAGTGGGGG-CGGGGCCAAATACCTAT-GATATGAGAACTTCAGC---TAACGAGGAAACCCCAAGCTTA--AGCT-CAG--------------------ACT-TA-----TTTATC-GTTTCTTGTTA--AATTT-CG-TGC-CATG---TGACATTGAAAT--CATAAAATTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-CATTTGTTTTTGATAAATATAATGGGGGCGC-CTGC--ACAT-AGCCATTTCTCTACA
gi|8 : CAA--CCT-TGGAAAACCTCCT---CACC-CTTTTTTTTTATTCTCTCTACGGAATTTCGCCAA---A-AA---T-GTTGCTACCTGTACATGTACATGCATG--TGCGAGAGAGCGACC-T-AAATAAAG--TTCAATGAATCACGGTGAGG--TCGT--T---TGGAATGAAT-GTTATGAAAA-------------GG-AG-------TTGAAATCA--GGTGCACTATAATATTTAATGAATGCTA--GAAACAACGTTA-----------------CATTGGGAGTTCAAA-CAG---TT-A----AGAACGCGAGA--G-G-T-TT--GTGAA-AAAAAT-TCTT--------GC-TG-AT---TTA-TTTTTTTTGTTAAATAATCAGTCTG---ATGCACATA---A-T-GTATC-G-G--C-TATCGCTG-TAAA-----------CGGAGAGATTTAGAAA---A-----TTTTTAATAATAATAC-
gi|9 : TACATGCTAGGTGTCCCAGAGAAA-AGGGGATTCAA--CGCCTGG---ACCCCCC---CCCC-C-----CTTTAT---CTCT-CGGAATT-CGCCAATGTA-TATACT-GT----AC--GTACATGTTCATGCATA--T-CGA-ATA-TATTC-T-AA-TAAAG--TCCA-TGA----CGGTAAGG--TCATGTT---T-------ATGTTCCT--AAA-------------GC-A--------TTGGAATCA--TGTG-A-TACAATC-TTA-TG--TG-TA--GAG-CAA-GCTA-TCTC--G-GGT-TGGTCA-TGG-AGTTCAAA-CAGG-TTT-tataaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATTATCGATATAAGGTAGTTATATATCGCCATACAAAATTAAATTCCTCTTTTTAAATATACTGTCCAAGTTATTCAATTAACTGTACCTACTGTCAGTCATGTTTCTTGATTTGTGCCTAGGGAAATATTAGCTAATGATGAAACCCTCAAG
Alignments
lowQualScore : 11 22222 222 222 4444444444444 11111 2222222222 1111 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 11 11 111 111 11111111111 1111 22222222222 5555555555555555555555555 111111 1111 22 111111 111111 11111111 22222 222222222222222222 111111111 111 1 11111 44444444444444444444 11111 111111 1 11
lowQualScore : 88 77777 111 1 1 888 3 0 1111111111111 55555 1 9999999999 4444 2 1 1 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 3 555 11 11 444 1 8 3 0 444 8 6 5 77777777777 5 777 8888 5 5 0 5 55 1 0 888 0 5 2222 77 1 33333333333 66 66 2222222222222222222222222 66 4 4 999999 66 8 66 4 4 5555 44 3 3 33 3 3 77 999999 2 333333 3 55 1 2 6666 2 44444444 3 3 555 33 6666 2 666 777 33333 555 2 2 2 555 44 3 0 3 555555555555555555 4 111111111 3 4 4 777 000 77 8888 1 5 99 77 77 1 77 22 5 22222 1 888 66 5 55555555555555555555 5 22222 5 4 5 66 0 5 5 888 7 77 666666 66 5 5 0 4 4 4 4 1 4 2 4 0 1 2 99 00
lowQualScore : .. ..... ... . . ... . . ............. ..... . .......... .... . . . . .................................................................................... . . ... .. .. ... . . . . ... . . . ........... . ... .... . . . . .. . . ... . . .... .. . ........... .. .. ......................... .. . . ...... .. . .. . . .... .. . . .. . . .. ...... . ...... . .. . . .... . ........ . . ... .. .... . ... ... ..... ... . . . ... .. . . . .................. . ......... . . . ... ... .. .... . . .. .. .. . .. .. . ..... . ... .. . .................... . ..... . . . .. . . . ... . .. ...... .. . . . . . . . . . . . . . . .. ..
lowQualScore : 55 00000 000 0 2 000 2 8 5555555555555 22222 0 5555555555 2222 5 0 0 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 888 00 22 000 0 0 8 6 000 0 7 7 33333333333 7 444 9999 7 7 4 7 99 7 1 333 4 7 1111 99 4 00000000000 11 11 2222222222222222222222222 11 4 0 999999 11 9 11 4 4 1111 22 1 1 88 1 1 11 444444 9 888888 1 44 5 9 1111 9 22222222 1 1 444 88 1111 9 444 999 99999 000 9 9 9 111 22 1 4 6 111111111111111111 0 111111111 8 0 0 888 777 99 4444 4 7 33 44 99 4 44 22 0 55555 0 888 99 0 66666666666666666666 0 55555 0 5 0 99 1 7 7 888 9 99 444444 99 0 0 8 4 4 4 0 2 0 6 4 4 4 7 22 22
consensus : ATCTTGGCTCGTATAGTAAATATATGAATGAAAAGATATTGATTATTNATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTG------------TAAAAT--TTCAGGTA---GAATA-CTGTACATG----CTATGCGTAAAAGTTTAGTACAGAAAGAAAACCCATCACCATTCAGTGCTAGTTNATCTTNCTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAA-AGGGGATCCAA--CCCCTGGAACACCCCCC---CNCC-CTTTTTTTTTAT---CTCT-CGGAATT-CGCCAATGCA-TA---T-GT----AC-TGTACATGTNCATGCATG--T-CGA-ATA-CACTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--TCGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-TA--GAG-CAA-GCTATTTTC--A-GGT-AGGTCATTGG-AGTTCAAA-CAGG-TTT-C----ATAATG-GAGA--G-T-T-CTA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ATGT---TA---A-C-GTA-C-G-G--C-TATCGCTG-T--A-----------C---GAAATTTA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGTACG-TC-CT-T-CGAATAT-AT-GTTTCTAG--CTCCGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AACT-CAG--------------------ACT-TA-----TATATC-GTTTGTAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATNTTT-ATGAATATACTGGGGGCCG-CGGC--GCAT-AGCCATTTCTCTTCATC
Reference ( family-1506 ) : ATCTTGGCTCGTATAGTAAATATATGAATGAAAAGATATTGATTATTNATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTG------------TAAAAT--TTCAGGTA---GAATA-CTGTACATG----CTATGCGTAAAAGTTTAGTACAGAAAGAAAACCCATCACCATTCAGTGCTAGTTNATCTTNCTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAA-AGGGGATCCAA--CCCCTGGAACACCCCCC---CNCC-CTTTTTTTTTAT---CTCT-CGGAATT-CGCCAATGCA-TA---T-GT----AC-TGTACATGTNCATGCATG--T-CGA-ATA-CACTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--TCGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-TA--GAG-CAA-GCTATTTTC--A-GGT-AGGTCATTGG-AGTTCAAA-CAGG-TTT-C----ATAATG-GAGA--G-T-T-CTA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ATGT---TA---A-C-GTA-C-G-G--C-TATCGCTG-T--A-----------C---GAAATTTA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGTACG-TC-CT-T-CGAATAT-AT-GTTTCTAG--CTCCGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AACT-CAG--------------------ACT-TA-----TATATC-GTTTGTAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATNTTT-ATGAATATACTGGGGGCCG-CGGC--GCAT-AGCCATTTCTCTTCATC
gi|1 : ATCTTGGCTCATATAG--AATA-----ATGAAA---TATTGATTATTGATTTTTATTTTTGAAATA-TATATGTACTCGTAAGTCTTG------------TAAAATAGTTCAGGTA----AATC-CTGTACATG----CAATGCGTAAAAGTTTATTTCAGAAAGAAAATCCATCACCATTCAGTGCTAGTTAATTTTGCTA-AGCAAAGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAAGATGGGATC-AA--CCCCTGGAACACCTCCC---CACT-TTTTTTTTTTAT------T-C----TT-CGCCAATGCA-TA---TCAT----A--TATACATTTCCATGCATA--T-CGA-ATA-CATTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--ACGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-TA--GAG-CAA-GCTGTTTTC--A-GGT-AGGTCATTGG-AGTTCAAA-CAGG-TTT-C----ATAATG-GAGA--G-T-T-CTA-GTGGA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCA---CGC--ATGT---TA---A-C-ATA-C---G--C-TATCGCTG-T--A-----------C---GAAATTT--AAT---T-----TTTTTGAT-AT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGGACG-TC-AT-T-CGAATAT-AT-GTTTCTA---CTCTGTAAAAGTGTGGA-CGGGGTCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AATT-CAG--------------------ACT-TA-----TATATC-GTTTATAG-TG--AATGTATG-CGC-CATATGTTAACATT-AAAT--CATGCAAGTA------CAAATGTTAAT--G--A-CAGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATGTTT-ATAAATTTACT-GGGCCCG-CATT--GCAT-AG-CA-TTATCTTCATC
gi|10 : TTC--AAGGT-AGGTTGT-GG-AGTTCTTATCAGG-TTT-TCAGAAAAATG-GAGAT-G-T-A-TTA-GTTAA-A----TATTTTA-------GCGTA-AT---TT---TTGT----TAAAAT-ATCAT--CG---A-------A---A-C-G-A-C-TTG--C--ACCTTTG-TCAA-----------A---GAAAATTA-AAAATGG-----CCTTTAATGAT-ATAC-AAACA---TA
gi|12 : tccgataatatgatcgaatacattgttttgaaagaTA-TTCCT------AAAT-ACCAT--CG---ATAT---GG---G---GTA-C-A-A--T-TATCATCA-A--G-----------C---GTAATTAA-AAA---G-----TTTTT-ATGGT-ACAC-AGATG---C-GACTG---TA--CATA--CTTGCG-CC-CT-T-C--------T-ATTTCCAG--ATCTGTAAAAA---------------------TAT-GA-----GAAATTCAGC---TAAGGAGGAAACCCCAatg
gi|13 : -TATAATCTTTT--G--TT-CA--TAG-CA--GATATTC-C--G-GGT-ATATTACTA----TTCAAA-CAGATTTT-C----AT-ATG-GGGG--G-C-T-CTA-GAAAATA----T-TTTT--------GC-TATAT---TT--TTTTT----T-AATT-ATCAC--CG---ATTC---CG---A-T-GTA-CAG-G--T-TATC
gi|14 : ---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AAACAGA-AT-CAT-GTAAATTCTTAGCACGAAGCGAGAA-AATTTATTTTT-ATGAATATACTGGGGGCCA-CATT--GCATAAGCCATTTCTCTTCAcgccaaattaaa
gi|15 : GGAATT-AGCCAATGCA-TA---T-------AC-T----------ATGCATG--C-CGA-ATA-CACTC-TTAATTGAAA--TTCA-TGA----CAGTGAAG--TCGTGTT---T-------AT-GTTCC--AAATGCAGCGGACAATGC-A--------TTAGGATCA--CGTG-A-T
gi|16 : AATAAGGAAACCTCAAGCTTA--AACT-GAGTTATAATATATATAGTGTATACTGTACTCTTTGTATT-ATTTGTAA-TG--A-TGCATG-CGC-CATG---TAACATT
gi|17 : -TTCCT--AAA-------------AC-AGCGGACGATTCGAATCA--CGTG-G-TATAATC-TTT-TG--TG-TA--GAG-CAA-GCTA--TTG--A-GGT-AGGCCA-CGG-AGTTCAAA-CAGGATTT-C----ATAATG-GAAA--G-cattcatcaca
gi|18 : gtgTTTC--A-GGT-AGGTCA-TGA-AGACTAAA-CAGG-TTTCC----ATAAGG-GAGAG-G-T-T-TT-------------T-TTTTGGGGGGGGGG-GG-AT---TTG----------TAAAGT-ATCTG--CG---ATG----TA---A-T-GTA-C-G-G--T-TAT
gi|19 : gttaTTTC--A-GGT-AGGTCAT-GG-AGTTCAAA-CATA-TTTTC----ATAATG-GAGA--G-GGT-CTA-GCGAA-A----T-TCTT--------GC-TG-AT---TTATTTTTT----TAAAAT-AGCAG--CG---ATG----TA---A-C-ATA-C-G-
gi|2 : gATCTTGGCTCGTATAATAAATATATGAATGAAAAGATATTGATTATTTATTTTTATTTTTGAAAAAGCGTGTGCAAT-GCAGG----G-------------AAAA---TGCATGTA---CA-----TGTACATGTATACTATATGTAAAA
gi|2 : ttTGTAAAA---TATGTACTCGTAAGTCTTG--------------AAAT----CAAGTA----AATAATTGTACATG----TTATGTGTAAAA-CTTAGTACAAAAAGAAAACCTATTACCATTCAGTGCTAGTTTATCTTTTTATAGCAAAGACCTtatgtactcgtaagtcttgaaatcaagtaaataattgtacatgttatgtgtaaaacttagtacaaaaagaaaacctattaccattcagtgctagtttatctttttatagcaaagaccttttgaaaatgttgttaaaaactacatagatgacccagggaaaaggggatccaaccccaggacacccccctttctctctctctctctctctctcggaattcgccaatgcatatatactgtacatgtgcatgcatgtcgaatagactcttaattaaaattcatgatggtgaagtcgtgtttatgtaccaaaaacagcggacaatgcattaggatcacgtgatttaaccttttgtgtagagtaagctatttcaggtaggtcatggagttcaataatctagtgaaatctttccgatctattatttaaaatatcagcgatgtaacgtacgggcttatcgctgtgcgaaatttaaaagttttcaataaatattaccacaca
gi|2 : ttatcttggctcgtataataaatatatgaatgaaaagatattgattatttatttttatttttgaaaaagcgtgtgcaatgcagggaaaatgcatgtacatgtacatgtatactataAAACTACATA---GATGACCCAGGGAAA-AGGGGATCCAA--CCCCAGGA-CACCCCCCTTTCTCT-CTCTCTCTCTCT---CTCT-CGGAATT-CGCCAATGCA-TA---T-AT----AC-TGTACATGTGCATGCATG--T-CGA-ATA-GACTCTT-AATTAAAA--TTCA-TGA----TGGTGAAG--TCGTGTT---T-------AT-GTACC--AAAAACAGCGGACAATGC-A--------TTAGGATCA--CGTG-A-TTTAA-CCTTT-TG--TG-TA--GAG-TAA-GCTA-TTTC--A-GGT-AGGTCA-TGG-AGTTCA-----------------ATAA-------------T-CTA-GTGAA-A------TCTT--------TC-CG-AT---CTA-TTATT----TAAAAT-ATCAG--CG---ATG----TA---A-C-GTA-C-G-GGCT-TATCGCTG-T--G-----------C---GAAATTTA-AAA---G-----TTTTCAATAA--ATAT-TACCA---CAtttgaaaatgttgttaaaaactacatagatgacccagggaaaaggggatccaaccccaggacacccccctttctctctctctctctctctctcggaattcgccaatgcatatatactgtacatgtgcatgcatgtcgaatagactcttaattaaaattcatgatggtgaagtcgtgtttatgtaccaaaaacagcggacaatgcattaggatcacgtgatttaaccttttgtgtagagtaagctatttcaggtaggtcatggagttcaataatctagtgaaatctttccgatctattatttaaaatatcagcgatgtaacgtacgggcttatcgctgtgcgaaatttaaaagttttcaataaatattaccacaca
gi|20 : ttatcttggctcgtataataaatatatgaatgaaaagatattgattatttatttttatttttgaaaaagcgtgtgcaatgcagggaaaatgcatgtacatgtacatgtatactatatgtaaaatatgtactcgtaagtcttgaaatcaagtaaataattgtacatgttatgtgtaaaacttagtacaaaaagaaaacctattaccattcagtgctagtttatctttttatagcaaagaccttttgaaaatgttgttaaTATGTACTCGTAAGTCTTGAAATCAGGTCTATAAAAT--TTCAGGTA---GAATA-TTGTACATG----CAATGTGTAAAAGTTTAGTACca
gi|21 : tatatgtacaatggtacaaTGATTATTCGTTTTTATTTTTGGAAAAGC------ACTTGCGA-TGCAG------------TGAAAA--TACATGTACCTGTATA-CTATGCATA----CTA
gi|22 : atcT-AACATGAAACAAGAA-AATTTATATTT-ATG-ATATTTTGGAGTCCGTCAGC--ACAT-TGCAATTTCACTTCATCaacatgttttcataa
gi|23 : tgATTCCTAT-GA-----GAATTTCAGT---TAATGAGGAATCCCAAAGCTTA--AACT-CAG--------------------ACT-TG-----TATAGC-GTTTGTAA-TG--A
gi|24 : A-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ACCAG--CG---ATG----TA---A-C-GTA-C-G-G--C-TATCACTG-
gi|25 : tg--A-GGT-AGATCAT-AG-AGTTCAAA-CAGA-TTG-CT---TTAATG-GAGAG-G-T-T-CCA-TTAAG-A----T-TTT
gi|26 : TTA------------TAAAAT--TTCAGGTA---GAAT---TGTACGTG----GTATGCGTAAAAGTTTAGTACNG
gi|27 : TGTTAAT--G-AA-TTGATCT-CAT-GTAAATTCT-AGCATTAACTAAGAACAATT
gi|28 : -AT-CAT-GTAAATTCA-AGCACAAAACAAGA-----------------AATATACTGGGGGCCG-CGG
gi|3 : TACTCGGTGTCCCAGAGAAA---GGGATCCAATCCCCCTG--ACACCCCTC---CGTCTCCTTTTTTTTCT---CTCT-CGGAAT--CGCCAATGCA-TA---T-GT----AC-TGTACATATCCATTCATA--C-CGA-ATA-CATTC-T--ATTAAAAACTCCA-TGA----CGGTGAGGGTCCGTGTTTTAT-------GT-TTCCT--AAA-------------GCAA--------TTGGAATCAACTGTG-A-GATAATC-----TG--TGTTAGTGAG-CAA-GCT-TATCCAAA-GGTAAGGTCA--GG-A-TTCAAA-CAGT-TCT-CA---ATAATG-GAGAAGG-T-TCCTA-GTG-A-A----T-TCTT--------G--TG-A----TTA-TTTTT----TAAAAT-A-CA---CG---ATG----TA---A-C-ATA-C-T-G--C-TATGCCTG-T--A-----------C---AAA--TTA-AAA---G-----TTTTTGAT-AT-ATAC-AAACA---CAGCCT--ATTA--TTTAACCGTACG-GT-CA-T-CGAATG--AT--TTTCT-G--CTCTGTGAAAGTGTGGC-ATGGGCCAAATACGTATAGA-----GAATTTCAGT---TAATGA-GAAACCCCAAGCT----AACT-CAGA-------------------ACT-TG-----TATATTGGTTTGTAG-TGCCAATGTA-G-TGCACATG-------ATT-----------AAAATA------CAAATGTTAAT--G-AA-CTG--GT-CAT-GTAAATTCT-AGCATGAAACATGGC-CATTTCTCTTC-A
gi|4 : cCAATGGAACA---T-AT----AC-TGTATAT--ACATTCATAAAT-CAA-ATA-CACTC-T-GTTT-----------T---------TGAGG--CAGTG----------------------------------------C-A--------TCTGAATCA--TGTG-A-TATAATCTCTT--G--TA-TA--GAG-CGA-GCTATTC-C--A-GGT-AGGTCAT-GG-AGTTCAAA-CAGG-TTT-CC---ATTGTA-GAGA--GGC-T-CTA-GTAAC-A----T-TTTT--------GC-TA-ATCGTTTT-TTTTT----TTAAGT-ATCAG--TG---ATAT---AAGGTA-CAGTA-C-A-G--T-CATCACCA-T--A-----------C---GAAATTAA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAACCTGATTGA--TTTAACTATACC-TA-CT-TGCAGGCAC-AT-ATTTCCAG--ATCTGTTAAAGTATGAA-CAGGGCTAAATGCCTAC-GA-----GAACATCAGT---TAATGAGGAAACTTCAAGCTTA--AACT-TGG--------------------AGT-TA-----TATACT-GTTTGTTG-TG--AATGTATG-CGC-CAAG---TAACATTTAAAT--CATAAAAGTA------CAAATGCTATT--G-AA-TTGA-AT-CAT-GTAAATTTT-AACATGAAACAAGAA-AATTTATATTT-ATGAATATATTGGGGGCTGTCAGCATGCAT---CCATTT
gi|5 : -TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TTTAATC------------------G-CAA-GCTATCT-C--A-GGT-AGGTCAT-GG-GGTTCATA-CAGG-TTTTC----ATAATG-GAGA--G-T-T-CT------------------T--------GC-TG-AT---TTA-TTTTT----TAAAAC-ATCAG--CGCGCATGG---TA---ATC-ATA-C-G-G--CCTATCGCTGGT--AATCATGGAGATC---GAAATATG-ACA---GGTGTATTTTTGATA-T-ATACCAAACATCACAGCCTGAATTATTTTTAACCGTATGATCTCT-T-CGAATATGATGGTTTCTAGCTCTCCTTAAAAGTGTGGGACGAGGCCAAA-------------------TTCAGTATCTAATGAGGAAACCTCAAGCTTAAGAGCTACAG--------------------ACT-TA-----TATATT-GTTTTTAG-TG---ATGTATGCCGC-CATG---TAACTTTGAAATACCATGAAAGTA------CAATTGTTAATCCGCAA-CAGA-ATACATCGT-AATTCT-AGTACGAAACGAGAA-AATTTATTTTT-ATa
gi|6 : -TTT-C----ATAATG-GAGA--GGT-T-CTA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ACGTAA-TA---A-C-GTA-C-G-G--C-TATCACTG-C--A-----------C---GGAATTTA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TGCAACCGTACG-TT-CTCT-CGAATAT-AT-GTTTCTAG--CTCTGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATGTCAGT---TAATGAGGAAACCCCAAGCTTA--AACG-CAG--------------------ACT-TA-----TATATC-GTTT-TAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTACAATTGCAAATGTTAAT--A-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-AATTTGTTTTT-ATAAATCTACTGGGGGCCG-CGGC--GCAT-AACCATTTCTCTTCA
gi|7 : ggtTAATT-GAGA--G-G-T-CCAAGTGCA-A----T-TATT--------GC-TA-AT---TTA-GTTTT----AAACAT-ATCAG--CG---ATGT----A---A-C-GTA-C-G-A--C-TATCGGTG-T--A-----------T---GGAATTTA-AC----G-----TTTTTGATAAT-ATAC-A-----------CT--------TTTAACCATGTG-TT-CTCT-CGAATAT-AC-GTTTCTAG--CTCCATGAAAGTGGGGG-CGGGGCCAAATACCTAT-GATATGAGAACTTCAGC---TAACGAGGAAACCCCAAGCTTA--AGCT-CAG--------------------ACT-TA-----TTTATC-GTTTCTTGTTA--AATTT-CG-TGC-CATG---TGACATTGAAAT--CATAAAATTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-CATTTGTTTTTGATAAATATAATGGGGGCGC-CTGC--ACAT-AGCCATTTCTCTACA
gi|8 : CAA--CCT-TGGAAAACCTCCT---CACC-CTTTTTTTTTATTCTCTCTACGGAATTTCGCCAA---A-AA---T-GTTGCTACCTGTACATGTACATGCATG--TGCGAGAGAGCGACC-T-AAATAAAG--TTCAATGAATCACGGTGAGG--TCGT--T---TGGAATGAAT-GTTATGAAAA-------------GG-AG-------TTGAAATCA--GGTGCACTATAATATTTAATGAATGCTA--GAAACAACGTTA-----------------CATTGGGAGTTCAAA-CAG---TT-A----AGAACGCGAGA--G-G-T-TT--GTGAA-AAAAAT-TCTT--------GC-TG-AT---TTA-TTTTTTTTGTTAAATAATCAGTCTG---ATGCACATA---A-T-GTATC-G-G--C-TATCGCTG-TAAA-----------CGGAGAGATTTAGAAA---A-----TTTTTAATAATAATAC-
gi|9 : TACATGCTAGGTGTCCCAGAGAAA-AGGGGATTCAA--CGCCTGG---ACCCCCC---CCCC-C-----CTTTAT---CTCT-CGGAATT-CGCCAATGTA-TATACT-GT----AC--GTACATGTTCATGCATA--T-CGA-ATA-TATTC-T-AA-TAAAG--TCCA-TGA----CGGTAAGG--TCATGTT---T-------ATGTTCCT--AAA-------------GC-A--------TTGGAATCA--TGTG-A-TACAATC-TTA-TG--TG-TA--GAG-CAA-GCTA-TCTC--G-GGT-TGGTCA-TGG-AGTTCAAA-CAGG-TTT-tataaca
blockSeqs : TA TATGA AGA T A GCG C AAATCAGGTCTAT TTT T CCTGTATAC TATA G T T T C C AG TC AA TTT T T T TCT A T A TGTTGCT C GTG AAT G G T TA T AAC A ATCA GT T TGGAATGA GT GA TGCAGCGGACAATGCA AC C C TTTAAT AA T GT A C TATC AA A A CT G T AT TCAGA C AGGT C AA A T AAAA A GGGGGGGG G T CGT AT TTTG A GTC CGC CACAT GGT T A T TT GC C G AATCATGGAGATC G GGTGTA G A C TCA GAT TT ATCT C G TG GG CT T GA TT A TATGA A ATC AG A TTATAATATATATAGTGTAT G CTCTT G G T CC C A . G AC CAATTG CC C A T A C T G C T G T A AT AA
blockSeqs : C T GC C T ATA A AATAAT . G C A AG . A . G . C . . . . TACTGT . ATC TG . . . A T A . . . T TTAT G . AACAGCGGACAATGCA . . . CTTTT . C . . . TTC . . . TT . . GA CC . TGT . A A . . . A . . . A . . T . TAAT . . . . AG . . . AAACGGA . ATGG G . . . GAA . CC C . C A . T C TA . . T . . . A . . . G . . . . . T . . . . . . . . . A . A . T A . T
blockSeqs : G . T T TTT G GAATAT . . . . . . A . A . T . . . . TAT . GTA C . . . G T A . . . T T T . ACAGCGGACGA . . . TTTT . . . . . TTT . . . T . . G TC . GGT . A A . . . . . . . G . . T . TG . . . . A . . . CAAA . G A . . . GAA . GT . . T A . T A TG . . T . . . . . . . G . . . . . G . . . . . . . . . A . C . . G . A
blockSeqs : . . TG T GAAT . . . . C . . . . . . TGT . GTT T . . . A T G . . . T T G . GCAA . . . TTTT . . . . . TTC . . . C . . G CT . GGG . A A . . . . . . . A . . C . CC . . . . G . . . GC . G A . . . G . TA . . T G . C G TA . . C . . . . . . . G . . . . . G . . . . . . . . . A . A . . A . A
blockSeqs : . T G CA . . . TAT . A C . . . A A G . . . . T T . GGAG . . . TCTT . . . . . TCT . . . T . . A CA . GGT . A A . . . . . . . A . . G . TA . . . . G . . . GC . G A . . . A . TT . . . G . T G TA . . T . . . . . . . T . . . . . G . . . . . . . . . A . T . . G . .
blockSeqs : . T . . T . . . . . . . . . . . T . GCA . . . TTAT . . . . . TCT . . . T . . A CC . GGC . A A . . . . . . . A . . G . GT . . . . G . . . AC . G A . . . . . TT . . . . . C . . . . C . . . . . . . C . . . . . . . . . . . . . . . A . T . . T
blockSeqs : G . GCA . . . T . . . . . TT . . . T . . T TC . GGT . A A . . . . . . . T . . G . T . . . . G . . . AC . G A . . . . . . . . . . . . . . . . . . . . . . . . . G . T .
blockSeqs : . . CA . . . . . . . . . . . . . T . . G C . GC . A C . . . . . . . A . . G . T . . . . T . . . AC . G A . . . . . . . A . . .
blockSeqs : . . . . T . . G C . GT . A A . . . . . . . A . . G . T . . . . A . . . AT . A . . . . A .
blockSeqs : . . . T . . G C . GG . . . . . . . . . . A . . G . T . . . . G . . .
blockSeqs : . . . T . . . A . GG . . . . . . . . . . A . . G . T . . . . G . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . G . T . . . . G . .
blockSeqs : . . . . . . . . . . . . . . G
blockSeqCons : T************ TTT** GAATAT**** A* TGTGT****** GCA********************** TTTT** TTT* T* CC**** GGT*** G** *** T**** G** ***
originalCons : ATCTTGGCTCGTATAGTAAATATATGAATGAAAAGATATTGATTATTNATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTG------------TAAAAT--TTCAGGTA---GAATA-CTGTACATG----CTATGCGTAAAAGTTTAGTACAGAAAGAAAACCCATCACCATTCAGTGCTAGTTNATCTTNCTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAA-AGGGGATCCAA--CCCCTGGAACACCCCCC---CNCC-CTTTTTTTTTAT---CTCT-CGGAATT-CGCCAATGCA-TA---T-GT----AC-TGTACATGTNCATGCATG--T-CGA-ATA-CACTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--TCGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTTT-TG--TG-TA--GAG-CAA-GCTATTTTC--A-GGT-AGGTCATTGG-AGTTCAAA-CAGG-TTT-C----ATAATG-GAGA--G-T-T-CTA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ATGT---TA---A-C-GTA-C-G-G--C-TATCGCTG-T--A-----------C---GAAATTTA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGTACG-TC-CT-T-CGAATAT-AT-GTTTCTAG--CTCCGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AACT-CAG--------------------ACT-TA-----TATATC-GTTTGTAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATNTTT-ATGAATATACTGGGGGCCG-CGGC--GCAT-AGCCATTTCTCTTCATC
finalCons : ATCTTGGCTCGTATAGTAAATATATGAATGAAAAGATATTGATTATTNATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTGT------------AAAATTT--CAGGTAGAATAT----TGTACATG----CTATGCGTAAAAGTTTAGTACAGAAAGAAAACCCATCACCATTCAGTGCTAGTTNATCTTNCTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAA-AGGGGATCCAA--CCCCTGGA-CACCCCCC---CNCC-CTTTTTTTTTAT---CTCT-CGGAATT-CGCCAATGCA-TATGTGT------AC-TGTACATGTNCATGCATG--T-CGA-ATA-CACTC-T-AATTAAAG--TCCA-TGA----CGGTGAGG--TCGTGTT---T-------AT-TTCCT--AAAGCA----------------------TTGGAATCA--CGTG-A-TATAATCTTTT--G--TG-TA--GAG-CAA-GCTATTT-C--A-GGT-AGGTCAT-GG-AGTTCAAA-CAGG-TTTCC----ATAATG-GAGAGGT---T-CTA-GTGAA-A----T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCAG--CG---ATGT----A---A-C-GTA-CG--G--C-TATCGCTG-T--A-----------C---GAAATTTA-AAA---G-----TTTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TTTAACCGTACG-TC-CT-T-CGAATAT-AT-GTTTCTAG--CTCCGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCCCAAGCTTA--AACT-CAG--------------------ACT-TA-----TATATC-GTTTGTAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATNTTT-ATGAATATACTGGGGGCCG-CGGC--GCAT-AGCCATTTCTCTTCATC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATTATCGATATAAGGTAGTTATATATCGCCATACAAAATTAAATTCCTCTTTTTAAATATACTGTCCAAGTTATTCAATTAACTGTACCTACTGTCAGTCATGTTTCTTGATTTGTGCCTAGGGAAATATTAGCTAATGATGAAACCCTCAAG
Alignments
lowQualScore : 11 22222 222 222 4444444444444 11111 2222222222 1111 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 111 111 333333 1111 22222222222 5555555555555555555555555 11111111 1111 222222222222222222 11111111111111 1111 1 111 11111 11111 44444444444444444444 11111 111111 1 11
lowQualScore : 88 77777 111 1 1 888 3 0 1111111111111 55555 1 9999999999 4444 2 1 1 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 3 555 8 4 8 0 444 99 3 88 444 6 1 777777 5 777 8888 5 5 0 5 55 1 0 888 0 5 2222 77 33333333333 66 66 2222222222222222222222222 66 4 4 1 55 4 55 8 55 4 3 3 555 3 77 3 0 11 555 2 2 3 8888888 2 44444444 3 3 555 2 6666 2 6666 444 2 8888 2 3333 2 2 5 33 2 6666 3 111111111111111111 0 3 11111111111111 1 1 3 3 2 777 0 999 66 0000 8888 5 5 4 000 55 0 66 6 1 00000 55 4 11111 777 4 66 5 55555555555555555555 5 22222 5 4 5 66 0 5 5 888 7 77 666666 66 5 5 0 4 4 4 4 1 4 2 4 0 1 2 99 00
lowQualScore : .. ..... ... . . ... . . ............. ..... . .......... .... . . . . .................................................................................... . . ... . . . . ... .. . .. ... . . ...... . ... .... . . . . .. . . ... . . .... .. ........... .. .. ......................... .. . . . .. . .. . .. . . . ... . .. . . .. ... . . . ....... . ........ . . ... . .... . .... ... . .... . .... . . . .. . .... . .................. . . .............. . . . . . ... . ... .. .... .... . . . ... .. . .. . . ..... .. . ..... ... . .. . .................... . ..... . . . .. . . . ... . .. ...... .. . . . . . . . . . . . . . . .. ..
lowQualScore : 55 00000 000 0 2 000 2 8 5555555555555 22222 0 8888888888 2222 5 0 0 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 888 0 0 0 8 000 00 8 66 000 7 7 333333 7 444 9999 7 7 4 7 99 7 1 333 4 7 1111 99 00000000000 11 11 2222222222222222222222222 11 4 0 9 55 0 55 0 55 0 6 3 444 1 33 1 6 44 000 9 9 1 1111111 9 22222222 1 1 444 9 1111 7 3333 777 7 3333 7 0000 7 7 3 99 9 1111 3 111111111111111111 2 6 55555555555555 2 3 6 6 3 000 7 888 99 6666 1111 0 0 5 999 22 4 99 2 0 55555 33 4 11111 888 0 99 0 66666666666666666666 0 55555 0 5 0 99 1 7 7 888 9 99 444444 99 0 0 8 4 4 4 0 2 0 6 4 4 4 7 22 22
consensus : ATCTTGGCTCGTATAGTAAATATATGAATGAAAAGATATTGATTATTNATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTG------------TAAAAT--TTCAGGTA---GAATA-CTGTACATG----CTATGCGTAAAAGTTTAGTACAGAAAGAAAACCCATCACCATTCAGTGCTAGTTNATCTTNCTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAA-AGGGGATCCAA-CCCCNGGA-CACCCCCC---C-NCTCTTTTTTTTTA-TCTCT---CGGAA-TTCGCCAATGCATAT--TG-TA-CTGTACATGTNCATGCATG--T-CGA-ATA-CACTC-T-AATTAAAG--TCC-ATG----ACGGTGAGG--TCGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTT--T-G--TG-TA--G-AGCAA-GCTATTT-C---AGGT-AGGTCAT--GGAGTTC-AAACAGGTTTTCAT---AATG-GAG-AGGTT-CTAGTG----AA-AT-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCA-G--CG---A-TG----T-AA----C-GTA-C-GG--C-TAT----CGCCG-T--A-----------C---GAAATTTA-AAA---G-----T----TTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TT----TAACCGTACG-TC-CT-T-CGAATAT-AT-GTTTCTAG--CTCCGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCC-CAAGCTTA--AACT-CAG--------------------ACT-TA-----TATATC-GTTTGTAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATNTTT-ATGAATATACTGGGGGCCG-CGGC--GCAT-AGCCATTTCTCTTCATC
Reference ( family-1506 ) : ATCTTGGCTCGTATAGTAAATATATGAATGAAAAGATATTGATTATTNATTTTTATTTTTGAAAAAGCGTATGTACTCGTAAGTCTTG------------TAAAAT--TTCAGGTA---GAATA-TTGTACATG----CTATGCGTAAAAGTTTAGTACAGAAAGAAAACCCATCACCATTCAGTGCTAGTTNATCTTNCTATAGCAAAGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAA-AGGGGATCCAA-CCCCTGGA-CACCCCCC---C-NCCCTTTTTTTTTA-TCTCT---CGGAA-TTCGCCAATGCATATG-TG-TA-CTGTACATGTNCATGCATG--T-CGA-ATA-CACTC-T-AATTAAAG--TCC-ATG----ACGGTGAGG--TCGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTT--T-G--TG-TA--G-AGCAA-GCTATTT-C---AGGT-AGGTCAT--GGAGTTC-AAACAGGTTTCCAT---AATG-GAG-AGGTT-CTAGTG----AA-AT-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCA-G--CG---A-TG----T-AA----C-GTA-C-GG--C-TAT----CGCTG-T--A-----------C---GAAATTTA-AAA---G-----T----TTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TT----TAACCGTACG-TC-CT-T-CGAATAT-AT-GTTTCTAG--CTCCGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCC-CAAGCTTA--AACT-CAG--------------------ACT-TA-----TATATC-GTTTGTAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATNTTT-ATGAATATACTGGGGGCCG-CGGC--GCAT-AGCCATTTCTCTTCATC
gi|1 : ATCTTGGCTCATATAG--AATA-----ATGAAA---TATTGATTATTGATTTTTATTTTTGAAATA-TATATGTACTCGTAAGTCTTG------------TAAAATAGTTCAGGTA----AATC-CTGTACATG----CAATGCGTAAAAGTTTATTTCAGAAAGAAAATCCATCACCATTCAGTGCTAGTTAATTTTGCTA-AGCAAAGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTTAAAAAAAAACAAACTACATACTAGGTGTCCCAGAGAAAGATGGGATC-AA-CCCCTGGAACACCTCCC---C-ACTTTTTTTTTTTA-T---T---C-----TTCGCCAATGCATAT--CA-TA--TATACATTTCCATGCATA--T-CGA-ATA-CATTC-T-AATTAAAG--TCC-ATG----ACGGTGAGG--ACGTGTT---T-------AT-TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TATAATCTTT--TTG--TG-TA--G-AGCAA-GCTGTTTTC---AGGT-AGGTCATT-GGAGTTC-AAACAGGTTTC-AT---AATG-GAG-AG-TT-CTAGTG----GA-AT-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCACG--C----A-TG----TTAA----C-ATA-C-G---C-TAT----CGCTG-T--A-----------C---GAAATTTA-AT----T-----T----TTTTGATA-T-ATAC-AAACA---CAGCCTGAATTA--TT----TAACCGGACG-TC-AT-T-CGAATAT-AT-GTTTCTA---CTCTGTAAAAGTGTGGA-CGGGGTCAAATACCTAT-GA-----GAATTTCAGT---TAATGAGGAAACCC-CAAGCTTA--AATT-CAG--------------------ACT-TA-----TATATC-GTTTATAG-TG--AATGTATG-CGC-CATATGTTAACATT-AAAT--CATGCAAGTA------CAAATGTTAAT--G--A-CAGA-AT-CAT-GTAAATTCT-AGCACGAAACGAGAA-AATTTATGTTT-ATAAATTTACT-GGGCCCG-CATT--GCAT-AG-CA-TTATCTTCATC
gi|10 : T--T-G--TT-TT--G-A--AA-G--ATTC-A---AGGT-AGGTTGT--GGAGTTCTTATCAGGTTTTCAGAAAAATG-GAG-ATGTA-TTAGTT----AA-ATATTTTA-------GCGTA-AT---T---TTTGT----TAAAAT-ATCA-T--CG---A---------AA----C-G-A-CTTG--C--AC----CTTTG-TCAA-----------A---GAAAATTA-AAAATGG-----C----CTTTAATGAT-ATAC-AAACA---TA
gi|11 : tccgataatatgatcgaatacaT-ATTA-T--CG---A-TA----T-AA----G-GTA----G--T-TATATATCGCCA-T--A-----------C---AAAATT---AAA---T-----TCCTCTTTTTA-AAT-ATAC-T---------GTCCAAGTTA--TTCAATTAACTGTACC-TA-CTGT-C-AGT-C-AT-GTTTCTTG--ATT--------TGTG---------------CCTAG-GG-----AAATATTAGC---TAATGATGAAACCCTCAAGatg
gi|12 : TA-TTCCT------AAAT-ACCA-T--CG---A-TA----T-GG----G-GTA-C-AA--T-TAT----CATCA-A--G-----------C---GTAATTAA-AAA---G-----T----TTTT-ATGGT-ACAC-AGATG---C-GACTG---TA--CA----TA--CTTGCG-CC-CT-T-C--------T-ATTTCCAG--ATCTGTAAAAA---------------------TAT-GA-----GAAATTCAGC---TAAGGAGGAAACCC-CA
gi|13 : -TATAATCTTT--T-G--TT-CA--T-AGCA--GATATTC-C---GGGT-ATATTAC--TA--TTC-AAACAGATTTTCAT----ATG-G-G-GGGCT-CTAGAA----AATAT-TTTT--------GC-TATAT---TT--TTTTT----T-AATT-ATCA-C--CG---ATTC----C-GA----T-GTA-CAGG--T-TAT----C
gi|14 : ---TAACATTGAAAT--CATGAAAGTA------CAAATGTTAAT--G-AAACAGA-AT-CAT-GTAAATTCTTAGCACGAAGCGAGAA-AATTTATTTTT-ATGAATATACTGGGGGCCA-CATT--GCATAAGCCATTTCTCTTCAcgccaaattaaa
gi|15 : GGAA-TTAGCCAATGCATAT------A-CT----------ATGCATG--C-CGA-ATA-CACTC-TTAATTGAAA--TTC-ATG----ACAGTGAAG--TCGTGTT---T-------AT-GTTCC--AAATGCAGCGGACAATGC-A--------TTAGGATCA--CGTG-A-T
gi|16 : AATAAGGAAACCT-CAAGCTTA--AACT-GAGTTATAATATATATAGTGTATACTGTACTCTTTGTATT-ATTTGTAA-TG--A-TGCATG-CGC-CATG---TAACATT
gi|17 : -TTCCT--AAA-------------AC-AGCGGACGATTCGAATCA--CGTG-G-TATAATCTTT--T-G--TG-TA--G-AGCAA-GCTA-TT-G---AGGT-AGGCCAC--GGAGTTC-AAACAGGATTTCAT---AATG-GAA-AGcattcatcaca
gi|18 : gtg-GTTATTT-C---AGGT-AGGTCAT--GAAGACT-AAACAGGTTTCCAT---AAGG-GAG-AGGTT-TT------------T-TTTTGGGGGGGGGG-GG-AT---TTG----------TAAAGT-ATCT-G--CG---A-TG----T-AA----T-GTA-C-GG--T-TAT----
gi|19 : TTT-C---AGGT-AGGTCAT--GGAGTTC-AAACATATTTTCAT---AATG-GAG-AGGGT-CTAGCG----AA-AT-TCTT--------GC-TG-AT---TTATTTTTT----TAAAAT-AGCA-G--CG---A-TG----T-AA----C-ATA-C-G
gi|2 : gATCTTGGCTCGTATAATAAATATATGAATGAAAAGATATTGATTATTTATTTTTATTTTTGAAAAAGCGTGTGCAAT-GCAGG----G-------------AAAA---TGCATGTA---CA-----TGTACATGTATACTATATGTAAAA
gi|2 : ttTGTAAAA---TATGTACTCGTAAGTCTTG--------------AAAT----CAAGTA----AATAATTGTACATG----TTATGTGTAAAA-CTTAGTACAAAAAGAAAACCTATTACCATTCAGTGCTAGTTTATCTTTTTATAGCAAAGACCTtatgtactcgtaagtcttgaaatcaagtaaataattgtacatgttatgtgtaaaacttagtacaaaaagaaaacctattaccattcagtgctagtttatctttttatagcaaagaccttttgaaaatgttgttaaaaactacatagatgacccagggaaaaggggatccaaccccaggacacccccctttctctctctctctctctctctcggaattcgccaatgcatatatactgtacatgtgcatgcatgtcgaatagactcttaattaaaattcatgatggtgaagtcgtgtttatgtaccaaaaacagcggacaatgcattaggatcacgtgatttaaccttttgtgtagagtaagctatttcaggtaggtcatggagttcaataatctagtgaaatctttccgatctattatttaaaatatcagcgatgtaacgtacgggcttatcgctgtgcgaaatttaaaagttttcaataaatattaccacaca
gi|2 : ttatcttggctcgtataataaatatatgaatgaaaagatattgattatttatttttatttttgaaaaagcgtgtgcaatgcagggaaaatgcatgtacatgtacatgtatactataAAACTACATA---GATGACCCAGGGAAA-AGGGGATCCAA-CCCCAGGA-CACCCCCCTTTC-TCTCTCTCTCTCTC-TCTCT---CGGAA-TTCGCCAATGCATA---TA-TA-CTGTACATGTGCATGCATG--T-CGA-ATA-GACTCTT-AATTAAAA--TTC-ATG----ATGGTGAAG--TCGTGTT---T-------AT-GTACC--AAAAACAGCGGACAATGC-A--------TTAGGATCA--CGTG-A-TTTAACCTTT--T-G--TG-TA--G-AGTAA-GCTATTT-C---AGGT-AGGTCAT--GGAGTTC-A-----------AT---AA-----------T-CTAGTG----AA-A--TCTT--------TC-CG-AT---CTA-TTATT----TAAAAT-ATCA-G--CG---A-TG----T-AA----C-GTA-C-GGGCT-TAT----CGCTG-T--G-----------C---GAAATTTA-AAA---G-----T----TTTCAATAA--ATAT-TACCA---CAtttgaaaatgttgttaaaaactacatagatgacccagggaaaaggggatccaaccccaggacacccccctttctctctctctctctctctctcggaattcgccaatgcatatatactgtacatgtgcatgcatgtcgaatagactcttaattaaaattcatgatggtgaagtcgtgtttatgtaccaaaaacagcggacaatgcattaggatcacgtgatttaaccttttgtgtagagtaagctatttcaggtaggtcatggagttcaataatctagtgaaatctttccgatctattatttaaaatatcagcgatgtaacgtacgggcttatcgctgtgcgaaatttaaaagttttcaataaatattaccacaca
gi|20 : ttatcttggctcgtataataaatatatgaatgaaaagatattgattatttatttttatttttgaaaaagcgtgtgcaatgcagggaaaatgcatgtacatgtacatgtatactatatgtaaaatatgtactcgtaagtcttgaaatcaagtaaataattgtacatgttatgtgtaaaacttagtacaaaaagaaaacctattaccattcagtgctagtttatctttttatagcaaagaccttttgaaaatgttgttaaTATGTACTCGTAAGTCTTGAAATCAGGTCTATAAAAT--TTCAGGTA---GAATA-TTGTACATG----CAATGTGTAAAAGTTTAGTACca
gi|21 : tatatgtacaatggtacaaTGATTATTCGTTTTTATTTTTGGAAAAGC------ACTTGCGA-TGCAG------------TGAAAA--TACATGTACCTGTATA-CTATGCATA----CTA
gi|22 : atcT-AACATGAAACAAGAA-AATTTATATTT-ATG-ATATTTTGGAGTCCGTCAGC--ACAT-TGCAATTTCACTTCATCaacatgttttcataa
gi|23 : tgATTCCTAT-GA-----GAATTTCAGT---TAATGAGGAATCCC-AAAGCTTA--AACT-CAG--------------------ACT-TG-----TATAGC-GTTTGTAA-TG--A
gi|24 : A-AT-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ACCA-G--CG---A-TG----T-AA----C-GTA-C-GG--C-TAT----CACTG-
gi|25 : tg---AGGT-AGATCAT--AGAGTTC-AAACAGATTGCTTT---AATG-GAG-AGGTT-CCATTA----AG-AT-TTT
gi|26 : TTA------------TAAAAT--TTCAGGTA---GAAT---TGTACGTG----GTATGCGTAAAAGTTTAGTACNG
gi|27 : TGTTAAT--G-AA-TTGATCT-CAT-GTAAATTCT-AGCATTAACTAAGAACAATT
gi|28 : -AT-CAT-GTAAATTCA-AGCACAAAACAAGA-----------------AATATACTGGGGGCCG-CGG
gi|3 : TACTCGGTGTCCCAGAGAAA---GGGATCCAATCCCCCTGA-CACCCCTC---CGTCTCCTTTTTTTTC-TCTCT---CGGAA--TCGCCAATGCATA---TG-TA-CTGTACATATCCATTCATA--C-CGA-ATA-CATTC-T--ATTAAAAACTCC-ATG----ACGGTGAGGGTCCGTGTTTTAT-------GT-TTCCT--AAA-------------GCAA--------TTGGAATCAACTGTG-A-GATAATC-----T-G--TGTTAGTG-AGCAA-GCT-TAT-CCAAAGGTAAGGTCA---GGA-TTC-AAACAGTTCTCAAT---AATG-GAGAAGGTTCCTAGTG-----A-AT-TCTT--------G--TG-A----TTA-TTTTT----TAAAAT-A-CA----CG---A-TG----T-AA----C-ATA-C-TG--C-TAT----GCCTG-T--A-----------C---AAA--TTA-AAA---G-----T----TTTTGAT-AT-ATAC-AAACA---CAGCCT--ATTA--TT----TAACCGTACG-GT-CA-T-CGAATG--AT--TTTCT-G--CTCTGTGAAAGTGTGGC-ATGGGCCAAATACGTATAGA-----GAATTTCAGT---TAATGA-GAAACCC-CAAGCT----AACT-CAGA-------------------ACT-TG-----TATATTGGTTTGTAG-TGCCAATGTA-G-TGCACATG-------ATT-----------AAAATA------CAAATGTTAAT--G-AA-CTG--GT-CAT-GTAAATTCT-AGCATGAAACATGGC-CATTTCTCTTC-A
gi|4 : cCAATGGA-ACA-TA-TA-CTGTATAT--ACATTCATAAAT-CAA-ATA-CACTC-T-GTTT-----------T---------TGAGG--CAGTG----------------------------------------C-A--------TCTGAATCA--TGTG-A-TATAATCTCT--T-G--TA-TA--G-AGCGA-GCTATTC-C---AGGT-AGGTCAT--GGAGTTC-AAACAGGTTTCCAT---TGTA-GAG-AGGCT-CTAGTA----AC-AT-TTTT--------GC-TA-ATCGTTTT-TTTTT----TTAAGT-ATCA-G--TG---A-TA----T-AAGGTACAGTA-C-AG--T-CAT----CACCA-T--A-----------C---GAAATTAA-AAA---G-----T----TTTTGATAAT-ATAC-AAACA---CAACCTGATTGA--TT----TAACTATACC-TA-CT-TGCAGGCAC-AT-ATTTCCAG--ATCTGTTAAAGTATGAA-CAGGGCTAAATGCCTAC-GA-----GAACATCAGT---TAATGAGGAAACTT-CAAGCTTA--AACT-TGG--------------------AGT-TA-----TATACT-GTTTGTTG-TG--AATGTATG-CGC-CAAG---TAACATTTAAAT--CATAAAAGTA------CAAATGCTATT--G-AA-TTGA-AT-CAT-GTAAATTTT-AACATGAAACAAGAA-AATTTATATTT-ATGAATATATTGGGGGCTGTCAGCATGCAT---CCATTT
gi|5 : -TTCCT--AAA-------------GC-A--------TTGGAATCA--CGTG-A-TTTAATC--------------------GCAA-GCTATCT-C---AGGT-AGGTCAT--GGGGTTC-ATACAGGTTTTCAT---AATG-GAG-AG------------------T-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAC-ATCA-G--CGCGCA-TGG---T-AAT---C-ATA-C-GG--CCTAT----CGCTGGT--AATCATGGAGATC---GAAATATG-ACA---GGTGTAT----TTTTGATA-T-ATACCAAACATCACAGCCTGAATTATTTT----TAACCGTATGATCTCT-T-CGAATATGATGGTTTCTAGCTCTCCTTAAAAGTGTGGGACGAGGCCAAA-------------------TTCAGTATCTAATGAGGAAACCT-CAAGCTTAAGAGCTACAG--------------------ACT-TA-----TATATT-GTTTTTAG-TG---ATGTATGCCGC-CATG---TAACTTTGAAATACCATGAAAGTA------CAATTGTTAATCCGCAA-CAGA-ATACATCGT-AATTCT-AGTACGAAACGAGAA-AATTTATTTTT-ATa
gi|6 : GGTTTTCAT---AATG-GAG-AGGTT-CTAGTG----AA-AT-TCTT--------GC-TG-AT---TTA-TTTTT----TAAAAT-ATCA-G--CG---A-CG----T-AATAA-C-GTA-C-GG--C-TAT----CACTG-C--A-----------C---GGAATTTA-AAA---G-----T----TTTTGATAAT-ATAC-AAACA---CAGCCTGAATTA--TG----CAACCGTACG-TT-CTCT-CGAATAT-AT-GTTTCTAG--CTCTGTAAAAGTGTGGG-CGGGGCCAAATACCTAT-GA-----GAATGTCAGT---TAATGAGGAAACCC-CAAGCTTA--AACG-CAG--------------------ACT-TA-----TATATC-GTTT-TAG-TG--AATGTATG-CGC-CATG---TAACATTGAAAT--CATGAAAGTACAATTGCAAATGTTAAT--A-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-AATTTGTTTTT-ATAAATCTACTGGGGGCCG-CGGC--GCAT-AACCATTTCTCTTCA
gi|7 : T---AATT-GAG-AGGTC-CAAGTG----CA-AT-TATT--------GC-TA-AT---TTA-GTTTT----AAACAT-ATCA-G--CG---A-TG----T-AA----C-GTA-C-GA--C-TAT----CGGTG-T--A-----------T---GGAATTTA-AC----G-----T----TTTTGATAAT-ATAC-A-----------CT--------TT----TAACCATGTG-TT-CTCT-CGAATAT-AC-GTTTCTAG--CTCCATGAAAGTGGGGG-CGGGGCCAAATACCTAT-GATATGAGAACTTCAGC---TAACGAGGAAACCC-CAAGCTTA--AGCT-CAG--------------------ACT-TA-----TTTATC-GTTTCTTGTTA--AATTT-CG-TGC-CATG---TGACATTGAAAT--CATAAAATTA------CAAATGTTAAT--G-AA-CTGA-AT-CAT-GTAAATTCT-AGCACGAAACAAGAA-CATTTGTTTTTGATAAATATAATGGGGGCGC-CTGC--ACAT-AGCCATTTCTCTACA
gi|8 : CAA-CCTTGGAA-AACCTCCT---C-ACCCTTTTTTTTTATTCTCTCTACGGAATTTCGCCAA---AAATGTTGCTACCTGTACATGTACATGCATG--TGCGAGAGAGCGACC-T-AAATAAAG--TTCAATGAATCACGGTGAGG--TC--GTT---TGGAATGAAT-GTTATGAAAA-------------GG-AG-------TTGAAATCA--GGTGCACTATAATATTTAAT-GAATGCTA--GAAACAACGTTA-----------------CATTGGGAGTTC-AAACAG---TTAAG---AACGCGAG-AGGTT-T--GTGAAAAAA-AT-TCTT--------GC-TG-AT---TTA-TTTTTTTTGTTAAATAATCA-GTCTG---A-TGCACAT-AA----T-GTATC-GG--C-TAT----CGCTG-TAAA-----------CGGAGAGATTTAGAAA---A-----T----TTTTAATAATAATAC-
gi|9 : TACATGCTAGGTGTCCCAGAGAAA-AGGGGATTCAA-CGCCTGGA-C-CCCCCC---C-CCCCTTT------A-TCTCT---CGGAA-TTCGCCAATGTATATACTG-TA-C-GTACATGTTCATGCATA--T-CGA-ATA-TATTC-T-AA-TAAAG--TCC-ATG----ACGGTAAGG--TCATGTT---T-------ATGTTCCT--AAA-------------GC-A--------TTGGAATCA--TGTG-A-TACAATCTTA--T-G--TG-TA--G-AGCAA-GCTATCT-C---GGGT-TGGTCAT--GGAGTTC-AAACAGGTTTtataaca