lowQualScore : 1111111111111111111111111111111111111111111 1111111111111111111111111111111111111
lowQualScore : 11 11 22222222 2222 111 33 11111 11 11 11 11 3 2222 2 333333 111 9999999999999999999999 22222 111 11 99999 1 11 111 1 2 1 222222 6666666666666666666666666666666666666666666 22222222 111 11 11 222222 11111 22222 1 0000000000000000000000000000000000000 1 222 11 2 1 1 11 22 888888888888888888 2222 1 1 1 8888888 11 1 222222 1
lowQualScore : 0 11 8 11 44444444 8 2222 6 6 111 2 99 99 88888 55 11 99 8 11 0 8 0 6 6 99 9999 99 3 000000 444 0 8888888888888888888888 3 00000 555 44 88 11111 6 8 3 2 33 777 0 0 88 2 8 4 2 7 8 8 0 333333 6 6 3333333333333333333333333333333333333333333 99 8 55555555 444 1 8 8 11 33 111111 6 3 11111 6 77777 8 3 6666666666666666666666666666666666666 3 000 88 0 5 8 3 6 88 55 2 444444444444444444 8888 5 6 5 6 6 5 4 4 9999999 6 88 6 3 6 0 0 6 99 333333 0
lowQualScore : . .. . .. ........ . .... . . ... . .. .. ..... .. .. .. . .. . . . . . .. .... .. . ...... ... . ...................... . ..... ... .. .. ..... . . . . .. ... . . .. . . . . . . . . ...... . . ........................................... .. . ........ ... . . . .. .. ...... . . ..... . ..... . . ..................................... . ... .. . . . . . .. .. . .................. .... . . . . . . . . ....... . .. . . . . . . .. ...... .
lowQualScore : 8 00 0 00 00000000 0 4444 0 7 777 5 22 00 00000 88 22 00 0 00 6 0 0 7 7 22 0000 22 7 555555 000 8 2222222222222222222222 0 00000 222 66 00 00000 0 3 3 2 88 555 0 0 00 5 8 0 5 0 0 0 8 000000 7 7 8888888888888888888888888888888888888888888 22 0 44444444 444 0 0 0 00 88 000000 0 2 00000 0 22222 2 3 3333333333333333333333333333333333333 3 777 33 0 0 3 3 0 33 33 5 555555555555555555 3333 0 0 0 0 0 0 0 0 5555555 0 33 0 2 0 6 8 7 22 000000 0
consensus : GTCCCATTGTATC--GTGC-TATT--TTTT-A-T-TTCCGT-CGTT--TTACGCACGTGCAACGCTTCCTTTGC-GGCAGGTTAT---TTTTNG--AATTAAAACA--GAAATCATGTTGTTGGG-TCAGA-CAAT--ATAATTT-GAATTAAA-GTTTATGCTAT-T-GGTAA-GTTT-CTG--CAAAAN---AACTTCGAA--TAATGCAGAA-TTTGAAT----NTTTCTAAAA---ATACACCAACCAAGAATTTA--GAATAATAT--AC----A--TTATTTGGCT-----AATTTCAATTCCAATCTAAAATGTCGACAGATACGGAGAAAAATATGGAA-CGCCAGAA--TG---GTAAAA-CATGANNAAATATTTTCATGAAAACTTTNATTTGATTTGGTTTTATTTCGATTTC-AAAGT-CATATA------TAATAAA-CAAT-GAACGTAAATTTAG-------------ATTTTTT-AA-------AATC---------GTCATT--CTTTT-A------TTAAAGATAAGAATTTTCG-GTGT-CTGAA--TGTGAAAA--AA-TG---TAGGAAAACAATATTTTTGGT-ATT-AAAAATCATT----CATTTACTATT-CTTATTCACAGCGTAAA------------AATCGAGCA----------A-----CGCGT-AA-TTTTACATA--AAATTATACTATTTGTATTTAAAGCAGGTCAAAGGTGAAAAGGAAGGCAAGCGTCTAGTTAGATTTA-AAGAA--AATATCGAATTACG-TCGCTGTTTGCGNTCTGTAGATTGATTTGATGACG----TA--ACG-TAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCAAAGCAAACGGAGTTGCAGACCATGATTTTCACGAACTTAANGNGAAAAATTTNGGCCTAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGNTGTAGTGTATTAGAATGTTTTTATCGAAAGCA-TT--TAAC------TAGCACGATACAGTGAGA
Reference ( gi|2 ) : GTCCCATTGTATC--GTGC-TATT--TTT--A-T-T-CCGT-CGTT--TTACGCATGTGCAACGCCTCCTTTGC-GGCAGGTTAT---TTTTGG--AATTAAAACATTGAAATCATATTGTTGGG-CCAGA-CAAT--ATAATTT-GAATTAAA-ATTTATGCTAT-TGGGTAA-GTTT-CTG--CAAAAA---AACTTCAAA--TAATGCAGAATTTTGAAA----TTTTCTAAAA---ATACACCAACCAAGAATTTATTGA--AATATG-ACA---A--TTATTTGGTT-----AAATCCAATTCCAATCTAAAA----AACAGATACAGAGAAATATATGGAA-CGCTAGAA--TG---GTAAAA-C-TGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTAATTCGATTTC-AAAGT-CATATA------TGATAAA-CAAT-GAACATAAATTTAG-------------ATT--------------AATC---------GTCATT--CTTTT-A------TAAAAGATAAGAATTTTCG-GTGT-CTGAA--TGTGAAAA--AA-TG---TAAGAAAACAATATTTTTGGT-ATT-AAAAATTATT----TATCTACTATT-CTTATTCACAGCGTAAA------------CATTGAGCA----------A-----CGTGT-AA-TATTACATA--AAATTAT-CTATTTGTATTTAAAGCAGGTCAAAGGTAAAAAGAAAGGCAAGCGTCTAGTAAGATTTA-AAGGA--AATATCGAATTATC-TCGCTGTTTGCGCTCTGTAGATTGATTTGATGACG----TACAATG-TAGCACGATACAATGGAACTCTT----CAGTTTCATCAAACGCGAAGCAAACTAAATTGCAAACCATGCTTTTCACGAATTTAAAGAGAAAAA---AA--TTAATTGTTTTTATTGAATCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAGGGT-TAGTGTATTAGAATGTTTTTATTGAAAGCA-TT--TAAC------TAGCACGATACAATGAGA
gi|3 : GTTCCATTGTATC--GTGC-TATT--TTT--ATT-T-CCGT-C-CT--TTACGCACGTGCAACGCTTCCTTTGC-GGTAGTTTAT---CTTTTA--AATTAAAAGA-GGAAATCATGTTGTTGGG-TCAGA-CAAT--ATAATTT-GAATTAAA-ATGTATGCAAT-T-GGTAA-GTTT-CTG--CAAAAT---AACTTCGGA--TAATGCAGAA-TTTGAAT----ATTTCTAAAA---ATTCGCCAACCAAGAATTTA--GAATAATAT--AC----A--TTATTTGGCT-----AATTTCAATTCAAAT
gi|7 : cttctcactgtatcgtgcGTCCCATTGTATC--GTGCCTATT--TTTTTA-T-TTCCGTTCGTT--T-ACGCACGTGCAACGCTTCCTTTGCGGGCAGGTTATCTCTTTTTA--AATTAAAAGA-GGAAATCATGT--TTGGG-TCAGACCAAT--ATTAATT-GAATTAAAGGTGTATGCTAT-TTGGTAAGGTTT-CTG--CAAAAAT--AACTTCGAAATTAAT-CAGAATTTTGAAATATTTTTTCTAAAA---A-ACACCAACCAAGAATTTA--GAATAATAT--AC----A--TTATTTGGCT-----AATTTCAATT-CAATgttttggaatcgtttacaaaatttcctcaagtcattttcaccgttaaaaatcttaataaaatgtcgacagatacggagaaaaacatggaacgccagaatggtaaaacatgataaaatattttcatgaaaaattttatttgatttggttttatttcgatttcaaagtcatgtatgataaacattgaacataaaatcagattcttaaagcatattaatggccattctttttattaaagatgaattcttggtgtctgaatgtgaacaaatgtaggaaaacaataaaatcattcatttactatacttattcacagcgtaaaaattgagcaacgcatcaatcatgcatgccaaatt
gi|6 : cacagctagtatcgtgcGTCCCAT-GTATC--GTGC-AATT--TTTT-A-T-T-T--T-CGTTGATTACGCATGTGCAACGCTTCCTTTGC-GGCAGGTTAT---TTTTTGCAAATTAAAACG-TGAAATCACGTTCTTGGGTTCAGA-TAATG-ATAATTTAAAATTAAA-GTTCATGTTATATCGGTAA-GTTT-CTGCCCAAAAAATTAATTTCAAA--TAATGCAGAATTT---GC----TTTTTTAAgtttggaatcgtttccaaaatttcctcagtcatt
gi|5 : tattcgctttctcactgtatcgttgcGCCCCATTGTATCATGTGC-TATT--TTT--A-TGT-CCGT-CGAT--T--------------GCTTCCTTCGA-GGCAGGCTAT---TTCTGG--AATTAGAACAT-GAAGTCA-------------AGA--AATCAATAATTT-GAATTAAA-GTTCATGCTAT-T-GGTAA-AATT-CTG--CAAAAAT--AACTTCAAA--TAATGCATAA-TTTGAAT----TTTTTTAAAAAACATACACCAACCAAGAATTCA--GA--ATAATGTACATTTATTTTATTTGGCTAATGGAAATTCGTTTCCAAtgtttttatgagagcattttaacaagcacgatacagtgagaaccgggcttatatatacactttttctaaaatttcaaaaaatcttgaaataatattataaa
gi|14 : actgtatcgtgcGTCCCATTGTATC--GTGC-TATTATTTT--A-T-TTCCGT-CGTT--T-ACGCGTGTGCAACGCTTCCTTTGC-AGCAGATTAC---TTTTGG--AATTAAAACA-TGAAATaatcctccagtcagaatctgatttagtgccgacagctatacatgtagaaaaaaattcacataacaaatataacacaaaagctgcagtagattagaatgtttttatcgaaagcattt
gi|1 : tatcgtgcCATGTGCAACGCTTCCTTTGC-GGCAGGCTAG---TTTTGG--AATTAAAACAT-GAAATCTTGTTGTTGGG-TCAGA-CAAT--ATAATTT-GAATTAAA-GTTTATGCTAT-T-GGTAA-GTTT-CTG--CAAAAT---AACTTCAAA--TAATGCAGAA-TTTGAAT----ATTTCTAAAA---ATACACCAACTAAGAATTTAGAAA--AATAT--AC----A--TTATTTGGCT-----AATTTCAATTCTAATCT
gi|15 : AA-GTTTACTG--CAAAAT---AACTTCAAA--TACTGCAGAA-TTTGAAT----ATTTCTAAAA---ATACtttggaatagtttccaaaatttcctccagccatttccgccgttacaaatcttattaaattgtcgacagacacggaaaaatataaggaaacacccgtatggtaaaacttaataaatattttcatgaaaactttaatttgatttggatttatttcgatttcaaagtcatatataataaacaatgaacgtaaatttagattttttaagcatgtaaatcgtaattcgtgtgtgtgaatgtgaaaaaaatgtaggaaaacaatatttttggtattaaaaatcattcatttactattcttattcacagcgtaaaaaagcagcaacgcatcaaacatacataccgaatttcccgtgcaattttacataaaatcatctatttgtatttaaaacaggtcaaaggtgaaaagaaaggcaagcgtctagtaaggtttaaagaaaatatcgaattatgtcgctgtttgcgctctgtagattgatttgatacaatgcaactcttcagtttcagcaaacgcaaaacaaacggagttgcagaccatgattttcacgaacttaatgtgaaaaatttaattgtttttattgagtccgttgaaaaaattgtgtagttttttttaacataacaaatataacacaaaaggttagtgtattagaatgtttttattgaaattatttaactagcacgatatactgagacaccg
gi|3 : GTT-----AAA---AATCTTAAT--AAAATGTCGACAGATACGGAGAAAAACATGGAA-CGCCAGAA--TG---GTAAAA-CATGATAAAATATTTTCATGAAAAATTTTATTTGATTTGGTTTTATTTCGATTTC-AAAGT-CATGTA------TGATAAA-CATT-GAACATAAAATCAG-------------ATTCTTAAAGCATATT-AATG---------GCCATT--CTTTTTA------TTAAAGAT--GAATTCTTG-GTGT-CTGAA--TGTGAACA--AA-TG---TAGGAAAACAAT---------------AAAATCATT----CATTTACTATA-CTTATTCACAGCGTAAA------------AATTGAGCA----------A-----CGCATCAA-TCATGCATGCCAAATT
gi|1 : cttctcactgtatcgtgcgttccattgtatcgtgctatttttatttccgtcctttacgcacgtgcaacgcttcctttgcggtagtttatcttttaaattaaaagaggaaatcatgttgttgggtcagacaatataatttgaattaaaatgtatgcaattggtaagtttctgcaaaataacttcggataatgcagaatttgaatatttctaaaaattcgccaaccaagaatttagaataatatacattatttggctaatttcaattcaaatgttttggaatcgtttacaaaatttcctcaagtcattttcaccACAGACACGGAAAAATATAAGGAAACACCCGTA--TG---GTAAAA-C-TTAATAAATATTTTCATGAAAACTTTAATTTGATTTGGATTTATTTCGATTTC-AAAGT-CATATA------TAATAAA-CAAT-GAACGTAAATTTAG-------------ATT------------------------------------TTTT-AAGCATGTAAATCGTAA-----TTCGTGTGT-GTGAA--TGTGAAAA--AAATG---TAGGAAAACAATATTTTTGGT-ATT-AAAAATCATT----CATTTACTATT-CTTATTCACAGCGTAAAAAAGCAGCAACGCATCAAACATACATACCGAATTTCCCGTGC-AA-TTTTACATA--AAATCAT-CTATTTGTATTTAAAACAGGTCAAAGGTGAAAAGAAAGGCAAGCGTCTAGTAAGGTTTA-AAGAA--AATATCGAATTATG-TCGCTGTTTGCGCTCTGTAGATTGATTTGAT-------------------------ACAATGCAACTCTT----CAGTTTCAGCAAACGCAAAACAAACGGAGTTGCAGACCATGATTTTCACGAACTTAATGTGAAAAA---T---TTAATTGTTTTTATTGAGTCCGTTGAAAAAATTGTGTAGTTTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATTGAAATTA-TT--TAAC------TAGCACGATATACTGAGA
gi|4 : catgtgcaacgcttcctttgcggcaggctagttttggaattaaaacatgaaatcttgttgttgggtcagacaatataatttgaattaaagtttatgctattggtaagtttctgcaaaataacttcaaataatgcagaatttgaatatttctaaaaatacaccaactaagaatttagaaaaatatacattatttggctaatttcaattctaatcttttggaatagtttccaaaatttcctccagccatttccgccgttacaaatcttattaaattgtcgAAATACGGAGAAAAATATGAAA-CGCCAGAA--TG---GTAAAAACATGGTAAAATATTTT-ATGAAAA----AACTT-------TTCTATTTCGATTTCCAAAGTTCATGTA------TAATAAAACATTTGAACATAAATTCAG-------------ATTTCTT----------AAGCATATTAAAGGTCAATACTTTTT-A------TTAAAGAT--GAATTCTCG-GTGTTCTGGAGATGTGAAAACAAA-T----TAGGAAAACAATATTTTTGGTTATTTAAAAATCATTAATTCATTTACTATTTCTTATTCACAGCGTAAA------------AA-TGAGCA----------A-----CGcaccg
gi|9 : aaGTTAGAAATTGATTGTAATA-C-TGAATAAATATTTTCATCAACACTTTTATTTGATTTGGTATTATTTCGATTTA-AAAGT-C--ATA------TGATAAA-CAAT-GAACAAAAATTGAGATATTTTAAGCATATT--------------AATC---------TTCATT--Ccatcatcatgcatttgccgaattcgttccgtgtaaattttacataaaaatatattatttgtatttaaagcaggtcaaagtaaaaaagaaggcaagtgtctagttagatttataagaaagaatatcgaattattgtcgctgtttttttggcccccggggccgccccccttctgttttaaaggaaatttttttggaatttttttggaatgacgtagcacgatacaatggaactctttgaacagttt
gi|11 : atttagaGGTTTTATTTCGATTTC-AAAGT-CATATACTCGTATAATAAA-TAAT-GAACATAAATTTAG-------------ATTTTTTAAAGCATAGCAATG---------GTCATT--CTTTT-A------TCAAAGATAAGAATTTTTG-GTGT-CTGAA--TGTGAA
gi|10 : -CAAT-GAACGTAAATTTAG-------------ATTTTTTTAACCATGCAAATT---------GTAATT--CTTTT-A------TTAGAGATAAAAAATTTTG-CTGT-CTGAA--TGTGAAAA--AG-TGTACTAGGAAAACTATATTTTTGGT-ATT-AAAAATCATT----CATGTA
gi|4 : -----CGTGT-AAATTTTACATA--AAAATATATTATTTGTATTTAAAGCAGGTCAAA-GTAAAAAAGAAGGCAAGTGTCTAGTTAGATTTATAAGAAAGAATATCGAATTATTGTCGCTGTTT
gi|8 : aaaaatacggagaaaaatatgaaacgccagaatggtaaaaacatggtaaaatattttatgaaaaaacttttctatttcgatttccaaagttcatgtataataaaacatttgaacataaattcagatttcttaagcatattaaaggtcaatactttttattaaagatgaattctcggtgttctggagatgtgaaaacaaattaggaaaacaatatttttggttatttaaaaatcattaattcatttactatttcttattcacagcgtaaaaatgagcaacgcatcatcatgcatttgccgaattcgttcTCTAGTTAAATGTA-AAGAA--AATATCAAATTACG-TCGCTGTTTGCGGTCTGTAGATTGATTTGATGACG----TA--------GCAGGATACAATGGAACTCTT----CAGTTTCAGCAAACGCAAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTTAGGCCTAATTGTTTTTATTGAGTCCTTTGAGAAAATTGTGTA--CTTTTTTAACATAATAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTCATTGAAAGCA-TT--TAAG------TAGCACAATACATTGAGAttttggcccccggggccgccccccttctgttttaaaggaaatttttttggaatttttttggaatgacgtagcacgatacaatggaactctttgaacagttt
gi|14 : ACGACGGAAATAAAATAATAGCACGATACAATGGGACcaccgggctatacaatttattttgta
gi|4 : tatcgtgcACG-TAGCACGATACAATGGAACTCTTTGAACAGTTTttacgcgtgtgcaacgcttcctttgcagcagattacttttggaattaaaacatgaaat
gi|3 : aaaaatacggagaaaaatatgaaacgccagaatggtaaaaacatggtaaaatattttatgaaaaaacttttctatttcgatttccaaagttcatgtataataaaacatttgaacataaattcagatttcttaagcatattaaaggtcaatactttttattaaagatgaattctcggtgttctggagatgtgaaaacaaattaggaaaacaatatttttggttatttaaaaatcattaattcatttactatttcttattcacagcgtaaaaatgagcaacgcatcatcatgcatttgccgaattcgttccgtgtaaattttacataaaaatatattatttgtatttaaagcaggtcaaagtaaaaaagaaggcaagtgtctagttagatttataagaaagaatatcgaattattgtcgctgtttttttggcccccggggccgccccccttctgttttaaaggaaatttttttggaatttttttggaatg-TAGCACGATACAATGGAAC
gi|13 : cttctcactgtatcgtgcTGTTTTTATTGAGTCCGTTAAGAAAATGGTGTA--CTTTTTGAACATAACAAATATAACACAAAATAT-TGGTGTA-----------TTATTGAAAGCA-TT--TAAC------TAGCACGATATGGTGAGtttttatttccgtcctttacgcacgtgcaacgcttcctttgcggtagtttatcttttaaattaaaagaggaaatcatgttgttgggtcagacaatataatttgaattaaaatgtatgcaattggtaagtttctgcaaaataacttcggataatgcagaatttgaatatttctaaaaattcgccaaccaagaatttagaataatatacattatttggctaatttcaattcaaatgttttggaatcgtttacaaaatttcctcaagtcattttcaccgttaaaaatcttaataaaatgtcgacagatacggagaaaaacatggaacgccagaatggtaaaacatgataaaatattttcatgaaaaattttatttgatttggttttatttcgatttcaaagtcatgtatgataaacattgaacataaaatcagattcttaaagcatattaatggccattctttttattaaagatgaattcttggtgtctgaatgtgaacaaatgtaggaaaacaataaaatcattcatttactatacttattcacagcgtaaaaattgagcaacgcatcaatcatgcatgccaaatt
gi|5 : TTCACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCA-TT--Tcca
gi|12 : actgtatcgtgcgccccattgtatcatgtgctatttttatgtccgtcgattgcttccttcgaggcaggctatttctggaattagaacatgaagtcaagaaatcaataatttgaattaaagttcatgctattggtaaaattctgcaaaaataacttcaaataatgcataatttgaatttttttaaaaaacatacaccaaccaagaattcagaataatgtacatttattttatttggctaatggaaattcgtttccaaaatcctccagtcagaatctgatttagtgccgacagctatacatgtagaaaaaaaACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCA-TTTATAACTACATGTAACACGATGCAGTGAAA
gi|6 : AATGTTTTTA-TGAGAGCATTT--TAAC------AAGCACGATACAGTGAGAcaccgggctatgtaccatatatatcctaca
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GGCTACATTTTGTTGTTTTTGCACCAAAAGAAAAAAAAATCAAATTCTGCGAGAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 1 1 111 3333 22 11111 1 1111111 1111111 111 2222222222 222222 11111 111111 11111111 222222 1111 111 11 11 1 2 111111 88888888888888888888888888888 1111 11 111 1111 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 11 11 33333333 2222 555555 11 2 222222
lowQualScore : 99 6 6 22 6 0 5 2 5 000 1 77 2222 1 6 5 77 11 5 5 77 5 5 5 5 66 5 66 44444 66 66 0 6666666 0000000 66 888 888 0 000 77 3333333333 5 222222 44444 222222 88888888 66 888888 2 4444 444 0 11 11 1 0 8 0 22 5 1 6 6 999999 6 5 1 0 55555555555555555555555555555 3333 99 7 1 6 6 99 11 8 444 0 8 8 7777 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 0 0 4 0 33 22 1 6 88888888 2 1111 0 0 1 1 222222 33 1 3 0 99 333333 3
lowQualScore : .. . . .. . . . . . ... . .. .... . . . .. .. . . .. . . . . .. . .. ..... .. .. . ....... ....... .. ... ... . ... .. .......... . ...... ..... ...... ........ .. ...... . .... ... . .. .. . . . . .. . . . . ...... . . . . ............................. .... .. . . . . .. .. . ... . . . .... . ............................................................................................. . . . . . .. .. . . ........ . .... . . . . ...... .. . . . .. ...... .
lowQualScore : 22 7 7 22 7 3 5 7 7 000 0 99 1111 7 7 7 44 44 7 7 99 7 7 0 0 99 0 99 88888 99 99 0 2222222 9999999 99 888 888 7 000 99 9999999999 7 111111 33333 999999 11111111 99 888888 5 2222 000 8 00 00 4 0 0 4 00 0 0 7 7 222222 7 7 4 1 44444444444444444444444444444 0000 22 3 0 7 7 22 00 0 000 8 0 0 0000 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 7 7 0 0 88 00 0 7 88888888 5 2222 7 7 0 0 777777 88 0 3 7 22 000000 2
consensus : GTCCCATTGTATC--GTGC-TATT-TTTT-ATTTCCGT-CGNTTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-G-AAATCATGTTGTTGGG-TCAGAC-AAT--ATAATTT-GAATTAAAGTT-TATGC--TATT-GG-TAAG-TTT-CTG--C-AA--AA---T-AACTTCGAA--TAATGCAGA--ATTT-G-------AA----TN-TTTCTA--AAA---ATA---CACCAACCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCTAAT-----TTC--------AAT--TCC------AATCT----AA---AATGTCGACAG--ATAC--GGAGAAAAATATGGAA-CGCCAGAATGGT-AAAACATGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-----A---AGCATATTA--------ATNGTCATT--C-TTTTATTAAA--GATAAGAATTTTCG-GTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAA------------ATCGAGCA----------A-----CGCGTC---------------AATT--TTACATGC-AAATTAT-C------------TATTTGTATTTAAAGCAGGTCAAAGGTAAAAAGAAAGGCAAGCGTCTAGTNAGATTTA-AAGAA--AATATCGAATTA-TGTCGCTGTTTGCGCTCTGTAGATTGATTTGATGACGT--AACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
Reference ( family-1503 ) : GTCCCATTGTATC--GTGC-TATT-TTTT-ATTTCCGT-CGTTTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTNG--AATTAAAACA--G-AAATCATGTTGTTGGG-TCAGAC-AAT--ATAATTT-GAATTAAAGTT-TATGC--TATT-GG-TAAG-TTT-CTG--C-AA--AA---N-AACTTCGAA--TAATGCAGA--ATTT-G-------AA----TN-TTTCTA--AAA---ATA---CACCAACCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCTAAT-----TTC--------AAT--TCC------AATCT----AA---AATGTCGACAG--ATAC--GGAGAAAAATATGGAA-CGCCAGAATGGT-AAAACATGANNAAATATTTTCATGAAAACTTTNATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TAAT-AAACA-ATGAACGTAAATTTAGATTTTTT-----A---A-------A--------ATCGTCATT--C-TTTTATTAAA--GATAAGAATTTTCG-GTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAA------------ATCGAGCA----------A-----CGCGT----------------AATT--TTACATA--AAATTATAC------------TATTTGTATTTAAAGCAGGTCAAAGGTGAAAAGGAAGGCAAGCGTCTAGTTAGATTTA-AAGAA--AATATCGAATTA-CGTCGCTGTTTGCGNTCTGTAGATTGATTTGATGACGT--AACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCAAAGCAAACGGAGTTGCAGACCATGATTTTCACGAACTTAANGNGAAAAATTTNGGCCTAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGNTGTAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACAGTGAGA
gi|1 : CATGTGCAACGCTTCCTTTGCGG-CAGGCTAG---TTTTGG--AATTAAAACAT-G-AAATCTTGTTGTTGGG-TCAGAC-AAT--ATAATTT-GAATTAAAGTT-TATGC--TATT-GG-TAAG-TTT-CTG--C-AA--AA---T-AACTTCAAA--TAATGCAGA--ATTT-G-------AA----TA-TTTCTA--AAA---ATA---CACCAACTAAGA---ATTTA--GAA-------AA-ATAT-ACA------TTATTT-----GGCTAAT-----TTC--------AAT--TCT------AATCT----
gi|1 : T-----TAC--------AAA--TCT------TAT-T----AA---ATTGTCGACAG--ACAC--GGAAAAATATAAGGAAACACCCGTATGGT-AAAAC-TTAATAAATATTTTCATGAAAACTTTAATTTGATTTGGATTTATTTCGATTT-CAAAG-TCATATA------TAAT-AAACA-ATGAACGTAAATTTAGATTTTTT-----A---A-------G-------------CATG----------TAAATCG-TAA-----TTCGTGTG-TGTG--AATGTGAAA--AAAATG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAAAGCAGCAACGCATCAAACATACATACCGAATTTCCCGTGC----------------AATT--TTACATA--AAATCAT-C------------TATTTGTATTTAAAACAGGTCAAAGGTGAAAAGAAAGGCAAGCGTCTAGTAAGGTTTA-AAGAA--AATATCGAATTA-TGTCGCTGTTTGCGCTCTGTAGATTGATTTGAT--------------------ACAATGCAACTCTT----CAGTTTCAGCAAACGCAAAACAAACGGAGTTGCAGACCATGATTTTCACGAACTTAATGTGAAAAATT------TAATTGTTTTTATTGAGTCCGTTGAAAAAATTGTGTAGTTTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATTGAAATTATT--TAAC------TAGCACGATATACTGAGAtttggaatagtttccaaaatttcctccagccatttccgccgttacaaatcttattaaattgtcgacagacacggaaaaatataaggaaacacccgtatggtaaaacttaataaatattttcatgaaaactttaatttgatttggatttatttcgatttcaaagtcatatataataaacaatgaacgtaaatttagattttttaagcatgtaaatcgtaattcgtgtgtgtgaatgtgaaaaaaatgtaggaaaacaatatttttggtattaaaaatcattcatttactattcttattcacagcgtaaaaaagcagcaacgcatcaaacatacataccgaatttcccgtgcaattttacataaaatcatctatttgtatttaaaacaggtcaaaggtgaaaagaaaggcaagcgtctagtaaggtttaaagaaaatatcgaattatgtcgctgtttgcgctctgtagattgatttgatacaatgcaactcttcagtttcagcaaacgcaaaacaaacggagttgcagaccatgattttcacgaacttaatgtgaaaaatttaattgtttttattgagtccgttgaaaaaattgtgtagttttttttaacataacaaatataacacaaaaggttagtgtattagaatgtttttattgaaattatttaactagcacgatatactgagacaccg
gi|10 : catgtgcaacgcttcctttgcggcaggctagttttggaattaaaacatgaaatcttgttgttgggtcagacaatataatttgaattaaagtttatgctattggtaagtttctgcaaaataacttcaaataatgcagaatttgaatatttctaaaaatacaccaactaagaatttagaaaaatatacattatttggctaatttcaattctaatcttttggaatagtttccaaaatttcctccagccatttccgccgCA-ATGAACGTAAATTTAGATTTTTTTAACCATGCA-------A--------ATTGTAATT--C-TTTTATTAGA--GATAAAAAATTTTG-CTG-TCTG--AATGTGAAA--AAG-TGTACTAGGAAAACTATATTTTTGG-TA-TTAAAAATC----ATTCATGTAcaccg
gi|11 : GGTTTTATTTCGATTT-CAAAG-TCATATACTCGTATAAT-AAATA-ATGAACATAAATTTAGATTTTTT-----A---A-------AGCATAGCAATGGTCATT--C-TTTTATCAAA--GATAAGAATTTTTG-GTG-TCTG--AATGTGAA
gi|12 : ACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCATTTATAACTACATGTAACACGATGCAGTGAAA
gi|13 : TGTTTTTATTGAGTCCGTTAAGAAAATGGTGTA--CTTTTTGAACATAACAAATATAACACAAAATAT-TGGTGTATTA-----------TTGAAAGCATT--TAAC------TAGCACGATATGGTGAGcaccgggctatgtaccatatatatcctaca
gi|14 : GTCCCATTGTATC--GTGC-TATTATTTT-ATTTCCGT-CG-TTTACGCGTGTGCAACGCTTCCTTTGCAG-CAGATTAC---TTTTGG--AATTAAAACAT-G-AAATcca
gi|15 : tatcgtgcAAG-TTTACTG--C-AA--AA---T-AACTTCAAA--TACTGCAGA--ATTT-G-------AA----TA-TTTCTA--AAA---ATA---C
gi|2 : GTCCCATTGTATC--GTGC-TATT-TTT--ATT-CCGT-CGTTTTACGCATGTGCAACGCCTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACATTG-AAATCATATTGTTGGG-CCAGAC-AAT--ATAATTT-GAATTAAAATT-TATGC--TATT-GGGTAAG-TTT-CTG--C-AA--AA---A-AACTTCAAA--TAATGCAGA--ATTTTG-------AA----AT-TTTCTA--AAA---ATA---CACCAACCAAGA---ATTTATTGAA----------ATATGACAA-----TTATTT-----GGTTAAA-----TCC--------AAT--TCC------AATCT----AA---AA----AACAG--ATAC--AGAGAAATATATGGAA-CGCTAGAATGGT-AAAAC-TGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTAATTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACATAAATTTAGATT---------------------A--------ATCGTCATT--C-TTTTATAAAA--GATAAGAATTTTCG-GTG-TCTG--AATGTGAAA--AAA-TG---TAAGAAAACAATATTTTTGG-TA-TTAAAAATT----ATTTATCTACTA-TTCTTATTCACAGCGTAAAC------------ATTGAGCA----------A-----CGTGT----------------AATA--TTACATA--AAATTAT-C------------TATTTGTATTTAAAGCAGGTCAAAGGTAAAAAGAAAGGCAAGCGTCTAGTAAGATTTA-AAGGA--AATATCGAATTA-TCTCGCTGTTTGCGCTCTGTAGATTGATTTGATGACGTACAATGTAGCACGATACAATGGAACTCTT----CAGTTTCATCAAACGCGAAGCAAACTAAATTGCAAACCATGCTTTTCACGAATTTAAAGAGAAAAAAAT-----TAATTGTTTTTATTGAATCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAGGGT-TAGTGTATTAGAATGTTTTTATTGAAAGCATT--TAAC------TAGCACGATACAATGAGA
gi|3 : GTTCCATTGTATC--GTGC-TATT-TTT--ATTTCCGT-C-CTTTACGCACGTGCAACGCTTCCTTTGCGG-TAGTTTAT---CTTTTA--AATTAAAAGA--GGAAATCATGTTGTTGGG-TCAGAC-AAT--ATAATTT-GAATTAAAATG-TATGC--AATT-GG-TAAG-TTT-CTG--C-AA--AA---T-AACTTCGGA--TAATGCAGA--ATTT-G-------AA----TA-TTTCTA--AAA---ATT---CGCCAACCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCTAAT-----TTC--------AAT--TCA------AAT
gi|3 : cttctcactgtatcgtgc-TCGGAT-AATGCAGAATTT-GAAT----ATT-T---C--TA-------AAA-ATT-CGC--C-AACCAA---G-AATTTAGAA--TAATATACATTATTT-G-------GC----TAATTTC------A---ATT---CA------AATG---TTTTG--GAA-------TC-GTTT-ACA------AAATTTCCTCAAGTCATT-----TTC--------A-----CCGTTAAAAATCTTAATAA---AATGTCGACAG--ATAC--GGAGAAAAACATGGAA-CGCCAGAATGGT-AAAACATGATAAAATATTTTCATGAAAAATTTTATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATGTA------TGAT-AAACA-TTGAACATAAAATCAGATTCTTA-----A---AGCATATTA--------ATGGCCATT--CTTTTTATTAAA--GAT--GAATTCTTG-GTG-TCTG--AATGTGAAC--AAA-TG---TAGGAAAACAAT---------------AAAATC----ATTCATTTACTA-TACTTATTCACAGCGTAAAA------------ATTGAGCA----------A-----CGCATC---------------AATC--ATGCATGCCAAATTgttttggaatcgtttacaaaatttcctcaagtcattttcaccgttaaaaatcttaataaaatgtcgacagatacggagaaaaacatggaacgccagaatggtaaaacatgataaaatattttcatgaaaaattttatttgatttggttttatttcgatttcaaagtcatgtatgataaacattgaacataaaatcagattcttaaagcatattaatggccattctttttattaaagatgaattcttggtgtctgaatgtgaacaaatgtaggaaaacaataaaatcattcatttactatacttattcacagcgtaaaaattgagcaacgcatcaatcatgcatgccaaatt
gi|4 : cttctcactgtatcgtgcgttccattgtatcgtgctatttttatttccgtcctttacgcacgtgcaacgcttcctttgcggtagtttatcttttaaattaaaagaggaaatcatgttgttgggtcagacaatataatttgaattaaaatgtatgcaattggtaagtttctgcaaaataactAA--ATAC--GGAGAAAAATATGAAA-CGCCAGAATGGTAAAAACATGGTAAAATATTTT-ATGAAAA----AACTT-------TTCTATTTCGATTTCCAAAGTTCATGTA------TAATAAAACATTTGAACATAAATTCAGATTTCTT-----A---AGCATATTA--------AAGGTCAATACT-TTTTATTAAA--GAT--GAATTCTCG-GTGTTCTGGAGATGTGAAAACAAA-T----TAGGAAAACAATATTTTTGGTTATTTAAAAATCATTAATTCATTTACTATTTCTTATTCACAGCGTAAAA------------AT-GAGCA----------A-----CGCATCATCATGCATTTGCCGAATTCGTTCCGTGT-AAATTTTACATAAAAATATATTATTTGTATTTAAAGCAGGTCAAA-GTAAAAAAGAAGGCAAGTGTCTAGTTAGATTTATAAGAAAGAATATCGAATTATTGTCGCTGTTT
gi|4 : aaT--GACGTAGCACGATACAATGGAACTCTTTGAACAGTTTttttggcccccggggccgccccccttctgttttaaaggaaatttttttggaatttttttggaatgacgtagcacgatacaatggaactctttgaacagttt
gi|5 : aaaaatacggagaaaaatatgaaacgccagaatggtaaaaacatggtaaaatattttatgaaaaaacttttctatttcgatttccaaagttcatgtataataaaacatttgaacataaattcagatttcttaagcatattaaaggtcaatactttttattaaagatgaattctcggtgttctggagatgtgaaaacaaattaggaaaacaatatttttggttatttaaaaatcattaattcatttactatttcttattcacagcgtaaaaatgagcaacgcatcatcatgcatttgccgaattcgttccgtgtaaattttacataaaaatatattatttgtatttaaagcaggtcaaagtaaaaaagaaggcaagtgtctagttagatttataagaaagaatatcgaattattgtcgctgtttttttggcccccggggccgccccccttctgttttaaaggaaatttttttggaatttttttggaaGCCCCATTGTATCATGTGC-TATT-TTT--ATGTCCGT-CGATT--------------GCTTCCTTCGAGG-CAGGCTAT---TTCTGG--AATTAGAACAT-G-AAGTCA-------------AGA--AATCAATAATTT-GAATTAAAGTT-CATGC--TATT-GG-TAAA-ATT-CTG--CAAA--AA---T-AACTTCAAA--TAATGCATA--ATTT-G-------AA----TT-TTTTTA--AAAAACATA---CACCAACCAAGA---ATTCA--GAA-------TA-ATGT-ACATTTATTTTATTT-----GGCTAATGGAAATTCGTTTCCAAAATCCTCCAGTCAGAATCT----GATTTAGTGCCGACAGCTATACATGTAGAAAAAAAT
gi|5 : actgtatcgtgcTTCACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCATT--Ttcacataacaaatataacacaaaagctgcagtagattagaatgtttttatcgaaagcattt
gi|6 : actgtatcgtgcgccccattgtatcatgtgctatttttatgtccgtcgattgcttccttcgaggcaggctatttctggaattagaacatgaagtcaagaaatcaataatttgaattaaagttcatgctattggtaaaattctgcaaaaataacttcaaataatgcataatttgaatttttttaaaaaacatacaccaaccaagaattcagaataatgtacatttattttatttggctaatggaaattcgtttccaaaatcctccagtcagaatctgatttagtgccgacagctatacatgtagaaaaaaaGTCCCAT-GTATC--GTGC-AATT-TTTT-ATTTTCGT-TGATT-ACGCATGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTTGCAAATTAAAACGT-G-AAATCACGTTCTTGGGTTCAGAT-AATG-ATAATTTAAAATTAAAGTT-CATGTTATATC-GG-TAAG-TTT-CTGCCC-AA--AAAATT-AATTTCAAA--TAATGCAGA--ATTT-GCTTTTTTAA----TG-TTTTTATGAGA---GCATTTTAACAAGCACGATACAGTGA--GAACCGGGCTTATATAT-ACA------CTTTTT-------CTAA-----------------AAT--TTC------AA-------AA---AATCTTGA
gi|7 : tattcgctttctcactgtatcgttgcGTCCCATTGTATC--GTGCCTATT-TTTTTATTTCCGTTCGTTT-ACGCACGTGCAACGCTTCCTTTGCGGGCAGGTTATCTCTTTTTA--AATTAAAAGA--GGAAATCATGTT--TGGG-TCAGACCAAT--ATTAATT-GAATTAAAGGTGTATGC--TATTTGG-TAAGGTTT-CTG--C-AA--AA---ATAACTTCGAAATTAAT-CAGA--ATTTTG-------AAATATTT-TTTCTA--AAA---A-A---CACCAACCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCTAAT-----TTC--------AAT--T-C------AATaataatattataaa
gi|8 : cacagctagtatcgtgcTCTAGTTAAATGTA-AAGAA--AATATCAAATTA-CGTCGCTGTTTGCGGTCTGTAGATTGATTTGATGACGT--A-----GCAGGATACAATGGAACTCTT----CAGTTTCAGCAAACGCAAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTTAGGCCTAATTGTTTTTATTGAGTCCTTTGAGAAAATTGTGTA--CTTTTTTAACATAATAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTCATTGAAAGCATT--TAAG------TAGCACAATACATTGAGAgtttggaatcgtttccaaaatttcctcagtcatt
gi|9 : ATTGT-AATAC-TGAATAAATATTTTCATCAACACTTTTATTTGATTTGGTATTATTTCGATTT-AAAAG-TC--ATA------TGAT-AAACA-ATGAACAAAAATTGAGATATTTT-----A---AGCATATTA--------ATCTTCATT--C-caccgggctatacaatttattttgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GGCTACATTTTGTTGTTTTTGCACCAAAAGAAAAAAAAATCAAATTCTGCGAGAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 111 11111111 22 2222222222 111 111111 22222222 222222222222222222 33333333333333333 111 2222222222 2222222 666666666666666666666666666666666666666666666666666666 111 11 11 1 2 111111 11 11 111 1111 1 1 111111111111111111111111111111111111111111111111111 22 444444444444444444 1 11111 111 1111 55555555555555555555 33333333 6666666666666666666666 2222 444444 11 1 222222
lowQualScore : 99 6 6 22 00 7 2 5 000 0 77 5 1 6 5 55555555 11 5 77 5555555555 5 1 77 000 5 55 5 444444 66 5 66 11111111 5 1 66 0 66 111111111111111111 0 66 888 888 88888888888888888 77 000 77 0000000000 0 5 2222222 444444444444444444444444444444444444444444444444444444 444 0 11 11 1 0 8 0 22 5 1 6 6 999999 6 5 1 0 5 5 4 1 77 5 1 44 2 6 99 11 8 444 0 8 8 7777 0 6 000000000000000000000000000000000000000000000000000 66 777777777777777777 55 1 6 33333 000 7777 22222222222222222222 66666666 9999999999999999999999 2 1111 0 000000 33 1 3 0 99 333333 1
lowQualScore : .. . . .. .. . . . ... . .. . . . . ........ .. . .. .......... . . .. ... . .. . ...... .. . .. ........ . . .. . .. .................. . .. ... ... ................. .. ... .. .......... . . ....... ...................................................... ... . .. .. . . . . .. . . . . ...... . . . . . . . . .. . . .. . . .. .. . ... . . . .... . . ................................................... .. .................. .. . . ..... ... .... .................... ........ ...................... . .... . ...... .. . . . .. ...... .
lowQualScore : 22 7 7 22 00 3 7 7 000 7 99 7 7 7 7 00000000 44 7 99 0000000000 7 4 99 777 7 22 0 444444 99 0 99 66666666 0 1 99 2 99 111111111111111111 1 99 888 888 66666666666666666 99 000 99 1111111111 6 7 7777777 444444444444444444444444444444444444444444444444444444 000 8 00 00 4 0 0 4 88 0 4 7 7 222222 7 7 4 1 7 7 0 0 99 7 8 33 2 7 22 00 0 000 8 0 0 0000 0 8 000000000000000000000000000000000000000000000000000 22 555555555555555555 00 0 0 00000 000 0000 55555555555555555555 22222222 0000000000000000000000 5 2222 7 777777 88 0 3 7 22 000000 0
consensus : GTCCCATTGTATC--GTGC-TATT-TTTT-ATTTCCGTCGNTTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-GAAATCATGTTGTTGGG-TCAG-----AC-AAT--ATAATTT-GAA--TTA----------AAGTT-TATGC--TATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGAA--TAATGCAGA--ATTT-G-------AA----TN-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCTAAT-----TTC--------A--AT--TCC------AA-TCTTA-TAA---AATGTCGACAG--ATAC--GGAGAAAAATATGGAA-CGCCAGAATGGT-AAAACATGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATATNAATCGTCATT--C-TTTTATTAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CGT-CA------ATT-----------TTACATA--AAAT-T----AT---------CTATTTGTATTTAAAGCAGGTCAAAGGTAAAAAGGAAGGCAAGCGTCTAGTTAGATTTATAAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTA--ACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
Reference ( family-1503 ) : GTCCCATTGTATC--GTGC-TATT-TTTT-ATTTCCGTCGNTTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-GAAATCATGTTGTTGGG-TCAG-----AC-AAT--ATAATTT-GAA--TTA----------AAGTT-TATGC--TATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGAA--TAATGCAGA--ATTT-G-------AA----TN-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCTAAT-----TTC--------A--AT--TCC------AA-TCT----AA---AATGTCGACAG--ATAC--GGAGAAAAATATGGAA-CGCCAGAATGGT-AAAACATGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATATTAATNGTCATT--C-TTTTATTAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAATCGAGCAACG-------------------------CGT-CA------ATT-----------TTACATG-CAAAT-T----AT---------CTATTTGTATTTAAAGCAGGTCAAAGGTAAAAAGAAAGGCAAGCGTCTAGTNAGATTTA-AAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTA--ACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
gi|1 : CATGTGCAACGCTTCCTTTGCGG-CAGGCTAG---TTTTGG--AATTAAAACAT-GAAATCTTGTTGTTGGG-TCAGACAATAT-AAT--TTGAATT-AAAGTTTATGCTATTGGTAAGTT-TCTGC--AA---AA-TAA--CTT-CAAATAATG--C-AG--AA---TTTGAATATTTCTAA--AAATACACC--AACT-A-------AG----AA-TTTAGA--AAA---ATA---TACATTATTTGGCTAATTTCAATTCTAATC---TTTTG--GAA-------TA-GTTT-CCA------AAATTTCCTCCAGCCATT-----TCC--------GCCGT--TAC------AAATCTTATTAA---ATTGTCGACAG--ACAC--GGAAAAATATAAGGAAACACCCGTATGGT-AAAAC-TTAATAAATATTTTCATGAAAACTTTAATTTGATTTGGATTTATTTCGATTT-CAAAG-TCATATA------TAAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATGTAAATCGTAATT--C-GT----------------------GTG-TGTG--AATGTGAAA--AAAATG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAAAGCAGCAACGCATCAAACATACATACCGAATTTCCCGTGCA------ATT-----------TTACATA--AAAT-C----AT---------CTATTTGTATTTAAAACAGGTCAAAGGTGAAAAGAAAGGCAAGCGTCTAGTAAGGTTTA-AAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------T--------------------ACAATGCAACTCTT----CAGTTTCAGCAAACGCAAAACAAACGGAGTTGCAGACCATGATTTTCACGAACTTAATGTGAAAAATTT------AATTGTTTTTATTGAGTCCGTTGAAAAAATTGTGTAGTTTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATTGAAATTATT--TAAC------TAGCACGATATACTGAGA
gi|10 : CA-ATGAACGTAAATTTAGATTTTTTTAA-CCATGCAAATTGTAATT--C-TTTTATTAGAGATAAAAAATTTTGCTG-TCTG--AATGTGAAA--AAG-TGTACTAGGAAAACTATATTTTTGG-TA-TTAAAAATC----ATTCATGTAcaccg
gi|11 : GGTTTTATTTCGATTT-CAAAG-TCATATACTCGTATAAT-AAATA-ATGAACATAAATTTAGATTTTTT-AAAGCATAGCAATGGTCATT--C-TTTTATCAAAGATAAGAATTTTTGGTG-TCTG--AATGTGAA
gi|12 : ACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCATTTATAACTACATGTAACACGATGCAGTGAAA
gi|13 : TGTTTTTATTGAGTCCGTTAAGAAAATGGTGTA--CTTTTTGAACATAACAAATATAACACAAAATAT-TGGTGTATTA-----------TTGAAAGCATT--TAAC------TAGCACGATATGGTGAGcaccgggctatgtaccatatatatcctaca
gi|14 : GTCCCATTGTATC--GTGC-TATTATTTT-ATTTCCGTCG-TTTACGCGTGTGCAACGCTTCCTTTGCAG-CAGATTAC---TTTTGG--AATTAAAACAT-GAAATcca
gi|15 : tatcgtgcAAG-TTTAC------TG--C-AA--AA---T----A-ACTTCAAA--TACTGCAGA--ATTT-G-------AA----TA-TTTCTA--AAA---ATA---C
gi|2 : GTCCCATTGTATC--GTGC-TATT-TTT--ATT-CCGTCGTTTTACGCATGTGCAACGCCTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACATTGAAATCATATTGTTGGG-CCAG-----AC-AAT--ATAATTT-GAA--TTA----------AAATT-TATGC--TATT-GGGTAAG-TTT-C------TG--C-AA--AA---A----A-ACTTCAAA--TAATGCAGA--ATTTTG-------AA----AT-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTATTGAA----------ATATGACAA-----TTATTT-----GGTTAAA-----TCC--------A--AT--TCC------AA-TCT----AA---AA----AACAG--ATAC--AGAGAAATATATGGAA-CGCTAGAATGGT-AAAAC-TGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTAATTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACATAAATTTAGATT---------------AATCGTCATT--C-TTTTATAAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAAGAAAACAATATTTTTGG-TA-TTAAAAATT----ATTTATCTACTA-TTCTTATTCACAGCGTAAACATTGAGCAACG-------------------------TGT--A------ATA-----------TTACATA--AAAT-T----AT---------CTATTTGTATTTAAAGCAGGTCAAAGGTAAAAAGAAAGGCAAGCGTCTAGTAAGATTTA-AAGGA--A--ATATCGAATTA-T-CTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTACAATGTAGCACGATACAATGGAACTCTT----CAGTTTCATCAAACGCGAAGCAAACTAAATTGCAAACCATGCTTTTCACGAATTTAAAGAGAAAAAAAT-----TAATTGTTTTTATTGAATCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAGGGT-TAGTGTATTAGAATGTTTTTATTGAAAGCATT--TAAC------TAGCACGATACAATGAGA
gi|3 : GTTCCATTGTATC--GTGC-TATT-TTT--ATTTCCGTC-CTTTACGCACGTGCAACGCTTCCTTTGCGG-TAGTTTAT---CTTTTA--AATTAAAAGAG-GAAATCATGTTGTTGGG-TCAG-----AC-AAT--ATAATTT-GAA--TTA----------AAATG-TATGC--AATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGGA--TAATGCAGA--ATTT-G-------AA----TA-TTTCTA--AAA---ATT---CGC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCTAAT-----TTC--------A--AT--TCA------AA-T
gi|3 : cttctcactgtatcgtgc-TCGG-----AT-AATGCAGAATTT-GAA--T--------------ATT-T---C--TA-------AAA-ATT-C------GC--C-AACCAA---G----A-ATTTAGAA--TAATATACATTATTT-G-------GC----TAATTTC------A---ATT---CA------------------------AATG---TTTTG--GAA-------TC-GTTT-ACA------AAATTTCCTCAAGTCATT-----TTC--------A-------CCGTTAAAAA-TCTTAATAA---AATGTCGACAG--ATAC--GGAGAAAAACATGGAA-CGCCAGAATGGT-AAAACATGATAAAATATTTTCATGAAAAATTTTATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATGTA------TGAT-AAACA-TTGAACATAAAATCAGATTCTTA-AA-GCATATTAATGGCCATT--CTTTTTATTAAAGAT--GAATTCTTGGTG-TCTG--AATGTGAAC--AAA-TG---TAGGAAAACAAT---------------AAAATC----ATTCATTTACTA-TACTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CAT-CA------ATC-----------ATGCATGCCAAAT-T----gttttggaatcgtttacaaaatttcctcaagtcattttcaccgttaaaaatcttaataaaatgtcgacagatacggagaaaaacatggaacgccagaatggtaaaacatgataaaatattttcatgaaaaattttatttgatttggttttatttcgatttcaaagtcatgtatgataaacattgaacataaaatcagattcttaaagcatattaatggccattctttttattaaagatgaattcttggtgtctgaatgtgaacaaatgtaggaaaacaataaaatcattcatttactatacttattcacagcgtaaaaattgagcaacgcatcaatcatgcatgccaaatt
gi|4 : cttctcactgtatcgtgcgttccattgtatcgtgctatttttatttccgtcctttacgcacgtgcaacgcttcctttgcggtagtttatcttttaaattaaaagaggaaatcatgttgttgggtcagacaatataatttgaattaaaatgtatgcaattggtaagtttctgcaaaataactAA--ATAC--GGAGAAAAATATGAAA-CGCCAGAATGGTAAAAACATGGTAAAATATTTT-ATGAAAA----AACTT-------TTCTATTTCGATTTCCAAAGTTCATGTA------TAATAAAACATTTGAACATAAATTCAGATTTCTT-AA-GCATATTAAAGGTCAATACT-TTTTATTAAAGAT--GAATTCTCGGTGTTCTGGAGATGTGAAAACAAA-T----TAGGAAAACAATATTTTTGGTTATTTAAAAATCATTAATTCATTTACTATTTCTTATTCACAGCGTAAAAAT-GAGCAACG-------------------------CAT-CATCATGCATTTGCCGAATTCGTTCCGTG-TAAAT-TTTACATAAAAATATATTATTTGTATTTAAAGCAGGTCAAA-GTAAAAAAGAAGGCAAGTGTCTAGTTAGATTTATAAGAAAGA--ATATCGAATTATT-GTCGCTG----TTT
gi|4 : aaCG-------------------------TGT-AA------ATT-----------TTACATA-AAAATAT----AT----------TATTTGTATTTAAAGCAGGTCAAAG-TAAAAAAGAAGGCAAGTGTCTAGTTAGATTTATAAGAA--AGAATATCGAATTA-TTGTCGCTGTTTTTTTGGCCCCCGGGGCCGCCCCCCTTCTGTTTTAAAGGAAATTTTTTTGGAATTTTTTTGGAATG--ACGTAGCACGATACAATGGAACTCTTTGAACAGTTTttttggcccccggggccgccccccttctgttttaaaggaaatttttttggaatttttttggaatgacgtagcacgatacaatggaactctttgaacagttt
gi|5 : aaaaatacggagaaaaatatgaaacgccagaatggtaaaaacatggtaaaatattttatgaaaaaacttttctatttcgatttccaaagttcatgtataataaaacatttgaacataaattcagatttcttaagcatattaaaggtcaatactttttattaaagatgaattctcggtgttctggagatgtgaaaacaaattaggaaaacaatatttttggttatttaaaaatcattaattcatttactatttcttattcacagcgtaaaaatgagcaacgcatcatcatgcatttgccgaattcgttcGCCCCATTGTATCATGTGC-TATT-TTT--ATGTCCGTCGATT--------------GCTTCCTTCGAGG-CAGGCTAT---TTCTGG--AATTAGAACAT-GAAGTCA-------------AG-----A--AATCAATAATTT-GAA--TTA----------AAGTT-CATGC--TATT-GG-TAAA-ATT-C------TG--CAAA--AA---T----A-ACTTCAAA--TAATGCATA--ATTT-G-------AA----TT-TTTTTA--AAAAACATA---CAC----------------CAA--CCAAGA---ATTCA--GAA-------TA-ATGT-ACATTTATTTTATTT-----GGCTAATGGAAATTCGTTTCCAAA--ATCCTCCAGTCAGAA-TCT----GATTTAGTGCCGACAGCTATACATGTAGAAAAAAAT
gi|5 : actgtatcgtgcTTCACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCATT--Ttcacataacaaatataacacaaaagctgcagtagattagaatgtttttatcgaaagcattt
gi|6 : actgtatcgtgcgccccattgtatcatgtgctatttttatgtccgtcgattgcttccttcgaggcaggctatttctggaattagaacatgaagtcaagaaatcaataatttgaattaaagttcatgctattggtaaaattctgcaaaaataacttcaaataatgcataatttgaatttttttaaaaaacatacaccaaccaagaattcagaataatgtacatttattttatttggctaatggaaattcgtttccaaaatcctccagtcagaatctgatttagtgccgacagctatacatgtagaaaaaaaGTCCCAT-GTATC--GTGC-AATT-TTTT-ATTTTCGTTGATT-ACGCATGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTTGCAAATTAAAACGT-GAAATCACGTTCTTGGGTTCAG-----AT-AATG-ATAATTTAAAA--TTA----------AAGTT-CATGTTATATC-GG-TAAG-TTT-C------TGCCC-AA--AAAATT----A-ATTTCAAA--TAATGCAGA--ATTT-GCTTTTTTAA----TG-TTTTTATGAGA---GCATTTTAA----------------CAA--GCACGATACAGTGA--GAACCGGGCTTATATAT-ACA------CTTTTT-------CTAA-----------------A--AT--TTC------AA--------AA---AATCTTGA
gi|7 : tattcgctttctcactgtatcgttgcGTCCCATTGTATC--GTGCCTATT-TTTTTATTTCCGTTCGTTTACGCACGTGCAACGCTTCCTTTGCGGGCAGGTTATCTCTTTTTA--AATTAAAAGAG-GAAATCATGTT--TGGG-TCAG-----ACCAAT--ATTAATT-GAA--TTA----------AAGGTGTATGC--TATTTGG-TAAGGTTT-C------TG--C-AA--AAA--T----A-ACTTCGAAATTAAT-CAGA--ATTTTG-------AAATATTT-TTTCTA--AAA---A-A---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCTAAT-----TTC--------A--AT--T-C------AA-Taataatattataaa
gi|8 : cacagctagtatcgtgcTCTAGTTAAATGTA-AAGAA--A--ATATCAAATTA-C-GTCGCTG----TTTG-----------CGG------TCTGT--------AGATTGATTTGA--------TGACGTA-------GCAGGATACAATGGAACTCTT----CAGTTTCAGCAAACGCAAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTTAGGCCTAATTGTTTTTATTGAGTCCTTTGAGAAAATTGTGTA--CTTTTTTAACATAATAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTCATTGAAAGCATT--TAAG------TAGCACAATACATTGAGAgtttggaatcgtttccaaaatttcctcagtcatt
gi|9 : ATTGT-AATAC-TGAATAAATATTTTCATCAACACTTTTATTTGATTTGGTATTATTTCGATTT-AAAAG-TC--ATA------TGAT-AAACA-ATGAACAAAAATTGAGATATTTT-AA-GCATATTAATCTTCATT--C-caccgggctatacaatttattttgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GGCTACATTTTGTTGTTTTTGCACCAAAAGAAAAAAAAATCAAATTCTGCGAGAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 111 222222 11 2222222222 111111 22222222 222222222 1111 111 111 4444444444444444 111 2222222222 222222 111111 11111 5555555555555555555555555555555555555555 1111 11 2222222 11 1111 222 11 44444444444 1111 2222222 22222 111111 11 11 111 1111 1 111111111111111111111111111111111111111111111111111 11 3333333333 11 111 2 11111 111 1111 55555555555555555555 33333333 6666666666666666666666 2222 444444 11 1 222222
lowQualScore : 99 6 6 22 00 7 2 5 000 0 77 5 1 6 6 444444 55 6 99 9999999999 6 99 6 6 5 5 666666 77 5 22222222 5 2 77 222222222 2222 1 77 000 0 000 4444444444444444 99 111 99 2222222222 6 555555 777777 99 66666 8888888888888888888888888888888888888888 7777 6666 0 11 6666666 11 1 7777 777 8 11 8 33333333333 7777 0 5 8 3 6666666 00000 6 6 999999 6 5 1 0 5 5 3 3 77 5 1 44 2 6 99 11 8 444 0 8 8 7777 0 9 000000000000000000000000000000000000000000000000000 99 5555555555 00 777 55 1 0 33333 000 7777 22222222222222222222 66666666 9999999999999999999999 2 1111 0 000000 33 1 3 0 99 333333 1
lowQualScore : .. . . .. .. . . . ... . .. . . . . ...... .. . .. .......... . .. . . . . ...... .. . ........ . . .. ......... .... . .. ... . ... ................ .. ... .. .......... . ...... ...... .. ..... ........................................ .... .... . .. ....... .. . .... ... . .. . ........... .... . . . . ....... ..... . . ...... . . . . . . . . .. . . .. . . .. .. . ... . . . .... . . ................................................... .. .......... .. ... .. . . ..... ... .... .................... ........ ...................... . .... . ...... .. . . . .. ...... .
lowQualScore : 22 7 7 22 00 3 7 7 000 7 99 7 7 7 7 333333 88 7 22 2222222222 7 22 7 7 7 7 444444 99 7 66666666 7 7 99 333333333 1111 0 99 000 1 000 2222222222222222 22 777 22 5555555555 7 888888 777777 22 77777 3333333333333333333333333333333333333333 3333 5555 2 00 0000000 00 4 0000 555 0 00 0 44444444444 0000 8 0 0 2 0000000 00000 7 7 222222 7 7 4 1 7 7 0 0 99 7 8 33 2 7 22 00 0 000 8 0 0 0000 0 8 000000000000000000000000000000000000000000000000000 00 0000000000 22 555 00 4 4 00000 000 0000 55555555555555555555 22222222 0000000000000000000000 5 2222 7 777777 88 0 3 7 22 000000 0
consensus : GTCCCATTGTATC--GTGC-TATT-TTTT-ATTTCCGTCGNTTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-GAAATCATGTTGTTGGG-TCAGAC-----AAT--ATAATTT-GAA--TTA----------AAGTT-TATGC--TATT-GG-TAAG-TTT-C------TG--C-AAAA---T----A-ACTTCGAA--TAATGCAGAATTT-G-------AA----TNTTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--TCC------AA-T------------CTTATNAAAT-GTCGACAG--AT-------AC--GGAGAAAAAT----ATGGAA---CGCCAGA-ATG--GT-AAAACAT---------GAAT----AAATATTTTCATGAAA-ACTTT-------AATTT-----GATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATATNAATCGTCATT--C-TTTTATTAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CGT-CA------ATT-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGGAAGGCAAGCGTCTAGTTAGATTTATAAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTA--ACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
Reference ( family-1503 ) : GTCCCATTGTATC--GTGC-TATT-TTTT-ATTTCCGTCGNTTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-GAAATCATGTTGTTGGG-TCAGAC-----AAT--ATAATTT-GAA--TTA----------AAGTT-TATGC--TATT-GG-TAAG-TTT-C------TG--C-AAAA---T----A-ACTTCGAA--TAATGCAGAATTT-G-------AA----TNTTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--TCC------AA-T------------CTTATAAAAT-GTCGACAG--AT-------AC--GGAGAAAAAT----ATGGAA---CGCCAGA-ATG--GT-AAAACAT---------GAAT----AAATATTTTCATGAAA-ACTTT-------AATTT-----GATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATATNAATCGTCATT--C-TTTTATTAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CGT-CA------ATT-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGGAAGGCAAGCGTCTAGTTAGATTTATAAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTA--ACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
gi|1 : CATGTGCAACGCTTCCTTTGCGG-CAGGCTAG---TTTTGG--AATTAAAACAT-GAAATCTTGTTGTTGGG-TCAGACAATATAAT--TTGAATT-AAAGTTTATGCTATTGGTAAGTT-TCTGC--AA---AA-TAA--CTT-CAAATAATG--C-AGAA---TTTGAATATTTCTAA--AAATACACCAACT-A-------AG----AATTTAGA--AAA---ATA---TACATTATTTGGCTAATTTCAATTCTAATC---TTTTG--GAA-------TA-GTTT-CCA------AAATTTCCTCCAGCC--ATT-----TCC--------GCCGT--TAC------AAAT------------CTTATTAAATTGTCGACAG--AC-------AC--GGAAAAATAT----AAGGAAA--CACCCGT-ATG--GT-AAAAC-T---------TAAT----AAATATTTTCATGAAA-ACTTT-------AATTT-----GATTTGGATTTATTTCGATTT-CAAAG-TCATATA------TAAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATGTAAATCGTAATT--C-GT----------------------GTG-TGTG--AATGTGAAA--AAAATG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAAAGCAGCAACGCATCAAACATACATACCGAATTTCCCGTGCA------ATT-----------TTACATA--AAATC----------AT-CTAT---TTGTATTTAAAACAGGTCAAAGGTGAAAAGAAAGGCAAGCGTCTAGTAAGGTTTA-AAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------T--------------------ACAATGCAACTCTT----CAGTTTCAGCAAACGCAAAACAAACGGAGTTGCAGACCATGATTTTCACGAACTTAATGTGAAAAATTT------AATTGTTTTTATTGAGTCCGTTGAAAAAATTGTGTAGTTTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATTGAAATTATT--TAAC------TAGCACGATATACTGAGA
gi|10 : CA-ATGAACGTAAATTTAGATTTTTTTAA-CCATGCAAATTGTAATT--C-TTTTATTAGAGATAAAAAATTTTGCTG-TCTG--AATGTGAAA--AAG-TGTACTAGGAAAACTATATTTTTGG-TA-TTAAAAATC----ATTCATGTAcaccg
gi|11 : GGTTTTATTTCGATTT-CAAAG-TCATATACTCGTATAAT-AAATA-ATGAACATAAATTTAGATTTTTT-AAAGCATAGCAATGGTCATT--C-TTTTATCAAAGATAAGAATTTTTGGTG-TCTG--AATGTGAA
gi|12 : ACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCATTTATAACTACATGTAACACGATGCAGTGAAA
gi|13 : TGTTTTTATTGAGTCCGTTAAGAAAATGGTGTA--CTTTTTGAACATAACAAATATAACACAAAATAT-TGGTGTATTA-----------TTGAAAGCATT--TAAC------TAGCACGATATGGTGAGcaccgggctatgtaccatatatatcctaca
gi|14 : GTCCCATTGTATC--GTGC-TATTATTTT-ATTTCCGTCG-TTTACGCGTGTGCAACGCTTCCTTTGCAG-CAGATTAC---TTTTGG--AATTAAAACAT-GAAATcca
gi|15 : tatcgtgcAAG-TTTAC------TG--C-AAAA---T----A-ACTTCAAA--TACTGCAGAATTT-G-------AA----TATTTCTA--AAA---ATA---C
gi|2 : GTCCCATTGTATC--GTGC-TATT-TTT--ATT-CCGTCGTTTTACGCATGTGCAACGCCTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACATTGAAATCATATTGTTGGG-CCAGAC-----AAT--ATAATTT-GAA--TTA----------AAATT-TATGC--TATT-GGGTAAG-TTT-C------TG--C-AAAA---A----A-ACTTCAAA--TAATGCAGAATTTTG-------AA----ATTTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTATTGAA----------ATATGACAA-----TTATTT-----GGTT--AAA-----TCC--------A--AT--TCC------AA-T------------CT---AAAA-----AACAG--AT-------AC--AGAGAAATAT----ATGGAA---CGCTAGA-ATG--GT-AAAAC-T---------GAAT----AAATATTTTCATGAAA-ACTTT-------AATTT-----GATTTGGTTTTAATTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACATAAATTTAGATT---------------AATCGTCATT--C-TTTTATAAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAAGAAAACAATATTTTTGG-TA-TTAAAAATT----ATTTATCTACTA-TTCTTATTCACAGCGTAAACATTGAGCAACG-------------------------TGT--A------ATA-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGAAAGGCAAGCGTCTAGTAAGATTTA-AAGGA--A--ATATCGAATTA-T-CTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTACAATGTAGCACGATACAATGGAACTCTT----CAGTTTCATCAAACGCGAAGCAAACTAAATTGCAAACCATGCTTTTCACGAATTTAAAGAGAAAAAAAT-----TAATTGTTTTTATTGAATCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAGGGT-TAGTGTATTAGAATGTTTTTATTGAAAGCATT--TAAC------TAGCACGATACAATGAGA
gi|3 : GTTCCATTGTATC--GTGC-TATT-TTT--ATTTCCGTC-CTTTACGCACGTGCAACGCTTCCTTTGCGG-TAGTTTAT---CTTTTA--AATTAAAAGAG-GAAATCATGTTGTTGGG-TCAGAC-----AAT--ATAATTT-GAA--TTA----------AAATG-TATGC--AATT-GG-TAAG-TTT-C------TG--C-AAAA---T----A-ACTTCGGA--TAATGCAGAATTT-G-------AA----TATTTCTA--AAA---ATT---CGC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--TCA------AA-TGTTTTGGAATCGTTTACAAAAT-TTCCTCAA--GTCATTTTCAC--CGTTAAAAATCTTAATAAAATGTCGACAGATACGGAGA-AAAACATGGAACGCCAGAATGGTAAAACA---TGATAAAATATTTTCATGAAAAATTTTATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATGTA------TGAT-AAACA-TTGAACATAAAATCAGATTCTTA-AA-GCATATTAATGGCCATT--CTTTTTATTAAAGAT--GAATTCTTGGTG-TCTG--AATGTGAAC--AAA-TG---TAGGAAAACAAT---------------AAAATC----ATTCATTTACTA-TACTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CAT-CA------ATC-----------ATGCATGCCAAATT----------
gi|4 : cttctcactgtatcgtgcAA--AT-------AC--GGAGAAAAAT----ATGAAA---CGCCAGA-ATG--GTAAAAACAT---------GGTA----AAATATTTT-ATGAAA-A-----------AACTT------------TTCTATTTCGATTTCCAAAGTTCATGTA------TAATAAAACATTTGAACATAAATTCAGATTTCTT-AA-GCATATTAAAGGTCAATACT-TTTTATTAAAGAT--GAATTCTCGGTGTTCTGGAGATGTGAAAACAAA-T----TAGGAAAACAATATTTTTGGTTATTTAAAAATCATTAATTCATTTACTATTTCTTATTCACAGCGTAAAAA-TGAGCAACG-------------------------CAT-CATCATGCATTTGCCGAATTCGTTCCGTGT-AAATTTTACATAAAAAT-ATATTATTTGTATTTAAAGCAGGTCAAA-GTAAAAAAGAAGGCAAGTGTCTAGTTAGATTTATAAGAAAGA--ATATCGAATTATT-GTCGCTG----TTT
gi|4 : aaCG-------------------------TGT-AA------ATT-----------TTACATA--AAAAT----------ATATTAT---TTGTATTTAAAGCAGGTCAAAG-TAAAAAAGAAGGCAAGTGTCTAGTTAGATTTATAAGAA--AGAATATCGAATTA-TTGTCGCTGTTTTTTTGGCCCCCGGGGCCGCCCCCCTTCTGTTTTAAAGGAAATTTTTTTGGAATTTTTTTGGAATG--ACGTAGCACGATACAATGGAACTCTTTGAACAGTTTttttggcccccggggccgccccccttctgttttaaaggaaatttttttggaatttttttggaatgacgtagcacgatacaatggaactctttgaacagttt
gi|5 : aaaaatacggagaaaaatatgaaacgccagaatggtaaaaacatggtaaaatattttatgaaaaaacttttctatttcgatttccaaagttcatgtataataaaacatttgaacataaattcagatttcttaagcatattaaaggtcaatactttttattaaagatgaattctcggtgttctggagatgtgaaaacaaattaggaaaacaatatttttggttatttaaaaatcattaattcatttactatttcttattcacagcgtaaaaatgagcaacgcatcatcatgcatttgccgaattcgttcGCCCCATTGTATCATGTGC-TATT-TTT--ATGTCCGTCGATT--------------GCTTCCTTCGAGG-CAGGCTAT---TTCTGG--AATTAGAACAT-GAAGTCA-------------AGA------AATCAATAATTT-GAA--TTA----------AAGTT-CATGC--TATT-GG-TAAA-ATT-C------TG--CAAAAA---T----A-ACTTCAAA--TAATGCATAATTT-G-------AA----TTTTTTTA--AAAAACATA---CAC----------------CAA--CCAAGA---ATTCA--GAA-------TA-ATGT-ACATTTATTTTATTT-----GGCT--AATGGAAATTCGTTTCCAAA--ATCCTCCAGTCAGAA-T------------CTGATTTAGT-GCCGACAGCTAT-------ACATGTAGAAAAAA----AT
gi|5 : actgtatcgtgcTTCACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCATT--Ttcacataacaaatataacacaaaagctgcagtagattagaatgtttttatcgaaagcattt
gi|6 : actgtatcgtgcgccccattgtatcatgtgctatttttatgtccgtcgattgcttccttcgaggcaggctatttctggaattagaacatgaagtcaagaaatcaataatttgaattaaagttcatgctattggtaaaattctgcaaaaataacttcaaataatgcataatttgaatttttttaaaaaacatacaccaaccaagaattcagaataatgtacatttattttatttggctaatggaaattcgtttccaaaatcctccagtcagaatctgatttagtgccgacagctatacatgtagaaaaaaaGTCCCAT-GTATC--GTGC-AATT-TTTT-ATTTTCGTTGATT-ACGCATGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTTGCAAATTAAAACGT-GAAATCACGTTCTTGGGTTCAGAT-----AATG-ATAATTTAAAA--TTA----------AAGTT-CATGTTATATC-GG-TAAG-TTT-C------TGCCC-AAAAAATT----A-ATTTCAAA--TAATGCAGAATTT-GCTTTTTTAA----TGTTTTTATGAGA---GCATTTTAA----------------CAA--GCACGATACAGTGA--GAACCGGGCTTATATAT-ACA------CTTTTT-------CTAAAAT-----TTC--------A--A
gi|7 : tattcgctttctcactgtatcgttgcGTCCCATTGTATC--GTGCCTATT-TTTTTATTTCCGTTCGTTTACGCACGTGCAACGCTTCCTTTGCGGGCAGGTTATCTCTTTTTA--AATTAAAAGAG-GAAATCATGTT--TGGG-TCAGACC----AAT--ATTAATT-GAA--TTA----------AAGGTGTATGC--TATTTGG-TAAGGTTT-C------TG--C-AAAAA--T----A-ACTTCGAAATTAAT-CAGAATTTTG-------AAATATTTTTTCTA--AAA---A-A---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--T-C------AA-T------------GTTaaaatcttgaaataatattataaa
gi|8 : cacagctagtatcgtgcTCTAGTTAAATGTA-AAGAA--A--ATATCAAATTA-C-GTCGCTG----TTTG-----------CGG------TCTGT--------AGATTGATTTGA--------TGACGTA-------GCAGGATACAATGGAACTCTT----CAGTTTCAGCAAACGCAAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTTAGGCCTAATTGTTTTTATTGAGTCCTTTGAGAAAATTGTGTA--CTTTTTTAACATAATAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTCATTGAAAGCATT--TAAG------TAGCACAATACATTGAGAtggaatcgtttccaaaatttcctcagtcatt
gi|9 : -ATT--GT-AATAC-T---------GAAT----AAATATTTTCATCAAC-ACTTT-------TATTT-----GATTTGGTATTATTTCGATTT-AAAAG-TC--ATA------TGAT-AAACA-ATGAACAAAAATTGAGATATTTT-AA-GCATATTAATCTTCATT--C-caccgggctatacaatttattttgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GGCTACATTTTGTTGTTTTTGCACCAAAAGAAAAAAAAATCAAATTCTGCGAGAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 111 222222 22 2222222222 111 111111 22222222 222222222222222222 33333333333333333 111 2222222222 2222222 333333 11111 555555555555555555555555 111 1 11 1 2 111111 11 11 111 1111 1 111111111111111111111111111111111111111111111111111 11 3333333333 11 111 2 11111 111 1111 55555555555555555555 33333333 6666666666666666666666 2222 444444 11 1 222222
lowQualScore : 99 6 6 22 00 7 2 5 000 0 77 5 1 6 5 111111 11 5 77 5555555555 5 1 77 000 5 55 5 444444 66 5 66 11111111 5 1 66 0 66 111111111111111111 0 66 888 888 88888888888888888 77 000 77 0000000000 0 5 2222222 000000 77 44444 666666666666666666666666 6 777 11 3 99 11 1 0 8 0 22 5 1 6 6 999999 6 5 1 0 5 5 3 3 77 5 1 44 2 6 99 11 8 444 0 8 8 7777 0 9 000000000000000000000000000000000000000000000000000 99 5555555555 00 777 55 1 0 33333 000 7777 22222222222222222222 66666666 9999999999999999999999 2 1111 0 000000 33 1 3 0 99 333333 1
lowQualScore : .. . . .. .. . . . ... . .. . . . . ...... .. . .. .......... . . .. ... . .. . ...... .. . .. ........ . . .. . .. .................. . .. ... ... ................. .. ... .. .......... . . ....... ...... .. ..... ........................ . ... .. . .. .. . . . . .. . . . . ...... . . . . . . . . .. . . .. . . .. .. . ... . . . .... . . ................................................... .. .......... .. ... .. . . ..... ... .... .................... ........ ...................... . .... . ...... .. . . . .. ...... .
lowQualScore : 22 7 7 22 00 3 7 7 000 7 99 7 7 7 7 777777 44 7 99 0000000000 7 4 99 777 7 22 0 444444 99 0 99 66666666 0 1 99 2 99 111111111111111111 1 99 888 888 66666666666666666 99 000 99 1111111111 6 7 7777777 333333 99 33333 000000000000000000000000 7 333 33 3 22 00 4 0 0 4 88 0 4 7 7 222222 7 7 4 1 7 7 0 0 99 7 8 33 2 7 22 00 0 000 8 0 0 0000 0 8 000000000000000000000000000000000000000000000000000 00 0000000000 22 555 00 4 4 00000 000 0000 55555555555555555555 22222222 0000000000000000000000 5 2222 7 777777 88 0 3 7 22 000000 0
consensus : GTCCCATTGTATC--GTGC-TATT-TTTT-ATTTCCGTCGNTTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-GAAATCATGTTGTTGGG-TCAGAC-----AAT--ATAATTT-GAA--TTA----------AAGTT-TATGC--TATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGAA--TAATGCAGA--ATTT-G-------AA----TN-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--TCC------AA-TCTTA-TNAAAT-GTCGACAG--ATAC--GGAGAAAAATATGGAA-CGCCAGAATGGT-AAAACATGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATATNAATCGTCATT--C-TTTTATTAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CGT-CA------ATT-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGGAAGGCAAGCGTCTAGTTAGATTTATAAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTA--ACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
Reference ( family-1503 ) : GTCCCATTGTATC--GTGC-TATT-TTTT-ATTTCCGTCGNTTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-GAAATCATGTTGTTGGG-TCAGAC-----AAT--ATAATTT-GAA--TTA----------AAGTT-TATGC--TATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGAA--TAATGCAGA--ATTT-G-------AA----TN-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--TCC------AA-TCTTA-TNAAAT-GTCGACAG--ATAC--GGAGAAAAATATGGAA-CGCCAGAATGGT-AAAACATGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATATNAATCGTCATT--C-TTTTATTAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CGT-CA------ATT-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGGAAGGCAAGCGTCTAGTTAGATTTATAAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTA--ACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
gi|1 : CATGTGCAACGCTTCCTTTGCGG-CAGGCTAG---TTTTGG--AATTAAAACAT-GAAATCTTGTTGTTGGG-TCAGACAATATAAT--TTGAATT-AAAGTTTATGCTATTGGTAAGTT-TCTGC--AA---AA-TAA--CTT-CAAATAATG--C-AG--AA---TTTGAATATTTCTAA--AAATACACC--AACT-A-------AG----AA-TTTAGA--AAA---ATA---TACATTATTTGGCTAATTTCAATTCTAATC---TTTTG--GAA-------TA-GTTT-CCA------AAATTTCCTCCAGCC--ATT-----TCC--------GCCGT--TAC------AAATCTTA-TTAAATTGTCGACAG--ACAC--GGAAAAATATAAGGAAACACCCGTATGGT-AAAAC-TTAATAAATATTTTCATGAAAACTTTAATTTGATTTGGATTTATTTCGATTT-CAAAG-TCATATA------TAAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATGTAAATCGTAATT--C-GT----------------------GTG-TGTG--AATGTGAAA--AAAATG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAAAGCAGCAACGCATCAAACATACATACCGAATTTCCCGTGCA------ATT-----------TTACATA--AAATC----------AT-CTAT---TTGTATTTAAAACAGGTCAAAGGTGAAAAGAAAGGCAAGCGTCTAGTAAGGTTTA-AAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------T--------------------ACAATGCAACTCTT----CAGTTTCAGCAAACGCAAAACAAACGGAGTTGCAGACCATGATTTTCACGAACTTAATGTGAAAAATTT------AATTGTTTTTATTGAGTCCGTTGAAAAAATTGTGTAGTTTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATTGAAATTATT--TAAC------TAGCACGATATACTGAGA
gi|10 : CA-ATGAACGTAAATTTAGATTTTTTTAA-CCATGCAAATTGTAATT--C-TTTTATTAGAGATAAAAAATTTTGCTG-TCTG--AATGTGAAA--AAG-TGTACTAGGAAAACTATATTTTTGG-TA-TTAAAAATC----ATTCATGTAcaccg
gi|11 : GGTTTTATTTCGATTT-CAAAG-TCATATACTCGTATAAT-AAATA-ATGAACATAAATTTAGATTTTTT-AAAGCATAGCAATGGTCATT--C-TTTTATCAAAGATAAGAATTTTTGGTG-TCTG--AATGTGAA
gi|12 : ACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCATTTATAACTACATGTAACACGATGCAGTGAAA
gi|13 : TGTTTTTATTGAGTCCGTTAAGAAAATGGTGTA--CTTTTTGAACATAACAAATATAACACAAAATAT-TGGTGTATTA-----------TTGAAAGCATT--TAAC------TAGCACGATATGGTGAGcaccgggctatgtaccatatatatcctaca
gi|14 : GTCCCATTGTATC--GTGC-TATTATTTT-ATTTCCGTCG-TTTACGCGTGTGCAACGCTTCCTTTGCAG-CAGATTAC---TTTTGG--AATTAAAACAT-GAAATcca
gi|15 : tatcgtgcAAG-TTTAC------TG--C-AA--AA---T----A-ACTTCAAA--TACTGCAGA--ATTT-G-------AA----TA-TTTCTA--AAA---ATA---C
gi|2 : GTCCCATTGTATC--GTGC-TATT-TTT--ATT-CCGTCGTTTTACGCATGTGCAACGCCTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACATTGAAATCATATTGTTGGG-CCAGAC-----AAT--ATAATTT-GAA--TTA----------AAATT-TATGC--TATT-GGGTAAG-TTT-C------TG--C-AA--AA---A----A-ACTTCAAA--TAATGCAGA--ATTTTG-------AA----AT-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTATTGAA----------ATATGACAA-----TTATTT-----GGTT--AAA-----TCC--------A--AT--TCC------AA-TCT----AAAA-----AACAG--ATAC--AGAGAAATATATGGAA-CGCTAGAATGGT-AAAAC-TGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTAATTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACATAAATTTAGATT---------------AATCGTCATT--C-TTTTATAAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAAGAAAACAATATTTTTGG-TA-TTAAAAATT----ATTTATCTACTA-TTCTTATTCACAGCGTAAACATTGAGCAACG-------------------------TGT--A------ATA-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGAAAGGCAAGCGTCTAGTAAGATTTA-AAGGA--A--ATATCGAATTA-T-CTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTACAATGTAGCACGATACAATGGAACTCTT----CAGTTTCATCAAACGCGAAGCAAACTAAATTGCAAACCATGCTTTTCACGAATTTAAAGAGAAAAAAAT-----TAATTGTTTTTATTGAATCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAGGGT-TAGTGTATTAGAATGTTTTTATTGAAAGCATT--TAAC------TAGCACGATACAATGAGA
gi|3 : GTTCCATTGTATC--GTGC-TATT-TTT--ATTTCCGTC-CTTTACGCACGTGCAACGCTTCCTTTGCGG-TAGTTTAT---CTTTTA--AATTAAAAGAG-GAAATCATGTTGTTGGG-TCAGAC-----AAT--ATAATTT-GAA--TTA----------AAATG-TATGC--AATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGGA--TAATGCAGA--ATTT-G-------AA----TA-TTTCTA--AAA---ATT---CGC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--TCA------AA-TGTTT-TGGAATCGTTTACAA--A
gi|3 : cttctcactgtatcgtgc-TCGGAT-----AATGCAGAATTT-GAA--T--------------ATT-T---C--TA-------AAA-ATT-C------GC--C-AACCAA---G----A-ATTTAGAA--TAATATACATTATTT-G-------GC----TAATTTC------A---ATT---CA------------------------AATG---TTTTG--GAA-------TC-GTTT-ACA------AAATTTCCTCAAGTC--ATT-----TTC--------A-------CCGTTAAAAA-TCTTAATAAAAT-GTCGACAG--ATAC--GGAGAAAAACATGGAA-CGCCAGAATGGT-AAAACATGATAAAATATTTTCATGAAAAATTTTATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATGTA------TGAT-AAACA-TTGAACATAAAATCAGATTCTTA-AA-GCATATTAATGGCCATT--CTTTTTATTAAAGAT--GAATTCTTGGTG-TCTG--AATGTGAAC--AAA-TG---TAGGAAAACAAT---------------AAAATC----ATTCATTTACTA-TACTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CAT-CA------ATC-----------ATGCATGCCAAATT----------atttcctcaagtcattttcaccgttaaaaatcttaataaaatgtcgacagatacggagaaaaacatggaacgccagaatggtaaaacatgataaaatattttcatgaaaaattttatttgatttggttttatttcgatttcaaagtcatgtatgataaacattgaacataaaatcagattcttaaagcatattaatggccattctttttattaaagatgaattcttggtgtctgaatgtgaacaaatgtaggaaaacaataaaatcattcatttactatacttattcacagcgtaaaaattgagcaacgcatcaatcatgcatgccaaatt
gi|4 : cttctcactgtatcgtgcgttccattgtatcgtgctatttttatttccgtcctttacgcacgtgcaacgcttcctttgcggtagtttatcttttaaattaaaagaggaaatcatgttgttgggtcagacaatataatttgaattaaaatgtatgcaattggtaagtttctgcaaaataactAA--ATAC--GGAGAAAAATATGAAA-CGCCAGAATGGTAAAAACATGGTAAAATATTTT-ATGAAAA----AACTT-------TTCTATTTCGATTTCCAAAGTTCATGTA------TAATAAAACATTTGAACATAAATTCAGATTTCTT-AA-GCATATTAAAGGTCAATACT-TTTTATTAAAGAT--GAATTCTCGGTGTTCTGGAGATGTGAAAACAAA-T----TAGGAAAACAATATTTTTGGTTATTTAAAAATCATTAATTCATTTACTATTTCTTATTCACAGCGTAAAAA-TGAGCAACG-------------------------CAT-CATCATGCATTTGCCGAATTCGTTCCGTGT-AAATTTTACATAAAAAT-ATATTATTTGTATTTAAAGCAGGTCAAA-GTAAAAAAGAAGGCAAGTGTCTAGTTAGATTTATAAGAAAGA--ATATCGAATTATT-GTCGCTG----TTT
gi|4 : aaCG-------------------------TGT-AA------ATT-----------TTACATA--AAAAT----------ATATTAT---TTGTATTTAAAGCAGGTCAAAG-TAAAAAAGAAGGCAAGTGTCTAGTTAGATTTATAAGAA--AGAATATCGAATTA-TTGTCGCTGTTTTTTTGGCCCCCGGGGCCGCCCCCCTTCTGTTTTAAAGGAAATTTTTTTGGAATTTTTTTGGAATG--ACGTAGCACGATACAATGGAACTCTTTGAACAGTTTttttggcccccggggccgccccccttctgttttaaaggaaatttttttggaatttttttggaatgacgtagcacgatacaatggaactctttgaacagttt
gi|5 : aaaaatacggagaaaaatatgaaacgccagaatggtaaaaacatggtaaaatattttatgaaaaaacttttctatttcgatttccaaagttcatgtataataaaacatttgaacataaattcagatttcttaagcatattaaaggtcaatactttttattaaagatgaattctcggtgttctggagatgtgaaaacaaattaggaaaacaatatttttggttatttaaaaatcattaattcatttactatttcttattcacagcgtaaaaatgagcaacgcatcatcatgcatttgccgaattcgttcGCCCCATTGTATCATGTGC-TATT-TTT--ATGTCCGTCGATT--------------GCTTCCTTCGAGG-CAGGCTAT---TTCTGG--AATTAGAACAT-GAAGTCA-------------AGA------AATCAATAATTT-GAA--TTA----------AAGTT-CATGC--TATT-GG-TAAA-ATT-C------TG--CAAA--AA---T----A-ACTTCAAA--TAATGCATA--ATTT-G-------AA----TT-TTTTTA--AAAAACATA---CAC----------------CAA--CCAAGA---ATTCA--GAA-------TA-ATGT-ACATTTATTTTATTT-----GGCT--AATGGAAATTCGTTTCCAAA--ATCCTCCAGTCAGAA-TCTGA-TTTAGT-GCCGACAGCTATACATGTAGAAAAAAAT
gi|5 : actgtatcgtgcTTCACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCATT--Ttcacataacaaatataacacaaaagctgcagtagattagaatgtttttatcgaaagcattt
gi|6 : actgtatcgtgcgccccattgtatcatgtgctatttttatgtccgtcgattgcttccttcgaggcaggctatttctggaattagaacatgaagtcaagaaatcaataatttgaattaaagttcatgctattggtaaaattctgcaaaaataacttcaaataatgcataatttgaatttttttaaaaaacatacaccaaccaagaattcagaataatgtacatttattttatttggctaatggaaattcgtttccaaaatcctccagtcagaatctgatttagtgccgacagctatacatgtagaaaaaaaGTCCCAT-GTATC--GTGC-AATT-TTTT-ATTTTCGTTGATT-ACGCATGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTTGCAAATTAAAACGT-GAAATCACGTTCTTGGGTTCAGAT-----AATG-ATAATTTAAAA--TTA----------AAGTT-CATGTTATATC-GG-TAAG-TTT-C------TGCCC-AA--AAAATT----A-ATTTCAAA--TAATGCAGA--ATTT-GCTTTTTTAA----TG-TTTTTATGAGA---GCATTTTAA----------------CAA--GCACGATACAGTGA--GAACCGGGCTTATATAT-ACA------CTTTTT-------CTAAAAT-----TTC--------A--A
gi|7 : tattcgctttctcactgtatcgttgcGTCCCATTGTATC--GTGCCTATT-TTTTTATTTCCGTTCGTTTACGCACGTGCAACGCTTCCTTTGCGGGCAGGTTATCTCTTTTTA--AATTAAAAGAG-GAAATCATGTT--TGGG-TCAGACC----AAT--ATTAATT-GAA--TTA----------AAGGTGTATGC--TATTTGG-TAAGGTTT-C------TG--C-AA--AAA--T----A-ACTTCGAAATTAAT-CAGA--ATTTTG-------AAATATTT-TTTCTA--AAA---A-A---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--T-C------AA-TGTT--TGGAAT-aaaatcttgaaataatattataaa
gi|8 : cacagctagtatcgtgcTCTAGTTAAATGTA-AAGAA--A--ATATCAAATTA-C-GTCGCTG----TTTG-----------CGG------TCTGT--------AGATTGATTTGA--------TGACGTA-------GCAGGATACAATGGAACTCTT----CAGTTTCAGCAAACGCAAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTTAGGCCTAATTGTTTTTATTGAGTCCTTTGAGAAAATTGTGTA--CTTTTTTAACATAATAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTCATTGAAAGCATT--TAAG------TAGCACAATACATTGAGAcgtttccaaaatttcctcagtcatt
gi|9 : ATTGT-AATAC-TGAATAAATATTTTCATCAACACTTTTATTTGATTTGGTATTATTTCGATTT-AAAAG-TC--ATA------TGAT-AAACA-ATGAACAAAAATTGAGATATTTT-AA-GCATATTAATCTTCATT--C-caccgggctatacaatttattttgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GGCTACATTTTGTTGTTTTTGCACCAAAAGAAAAAAAAATCAAATTCTGCGAGAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 111 222222 22 2222222222 111 111111 22222222 222222222222222222 33333333333333333 111 2222222222 2222222 333333 11111 555555555555555555555555 111 1 11 1 2 111111 11 11 111 1111 1 111111111111111111111111111111111111111111111111111 11 3333333333 11 111 2 11111 111 1111 55555555555555555555 33333333 6666666666666666666666 2222 444444 11 1 222222
lowQualScore : 99 6 6 22 00 7 2 5 000 0 77 5 1 6 5 111111 11 5 77 5555555555 5 1 77 000 5 55 5 444444 66 5 66 11111111 5 1 66 0 66 111111111111111111 0 66 888 888 88888888888888888 77 000 77 0000000000 0 5 2222222 000000 77 44444 666666666666666666666666 6 777 11 3 99 11 1 0 8 0 22 5 1 6 6 999999 6 5 1 0 5 5 3 3 77 5 1 44 2 6 99 11 8 444 0 8 8 7777 0 9 000000000000000000000000000000000000000000000000000 99 5555555555 00 777 55 1 0 33333 000 7777 22222222222222222222 66666666 9999999999999999999999 2 1111 0 000000 33 1 3 0 99 333333 1
lowQualScore : .. . . .. .. . . . ... . .. . . . . ...... .. . .. .......... . . .. ... . .. . ...... .. . .. ........ . . .. . .. .................. . .. ... ... ................. .. ... .. .......... . . ....... ...... .. ..... ........................ . ... .. . .. .. . . . . .. . . . . ...... . . . . . . . . .. . . .. . . .. .. . ... . . . .... . . ................................................... .. .......... .. ... .. . . ..... ... .... .................... ........ ...................... . .... . ...... .. . . . .. ...... .
lowQualScore : 22 7 7 22 00 3 7 7 000 7 99 7 7 7 7 777777 44 7 99 0000000000 7 4 99 777 7 22 0 444444 99 0 99 66666666 0 1 99 2 99 111111111111111111 1 99 888 888 66666666666666666 99 000 99 1111111111 6 7 7777777 333333 99 33333 000000000000000000000000 7 333 33 3 22 00 4 0 0 4 88 0 4 7 7 222222 7 7 4 1 7 7 0 0 99 7 8 33 2 7 22 00 0 000 8 0 0 0000 0 8 000000000000000000000000000000000000000000000000000 00 0000000000 22 555 00 4 4 00000 000 0000 55555555555555555555 22222222 0000000000000000000000 5 2222 7 777777 88 0 3 7 22 000000 0
consensus : GTCCCATTGTATC--GTGC-TATT-TTTT-ATTTCCGTCGNTTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-GAAATCATGTTGTTGGG-TCAGAC-----AAT--ATAATTT-GAA--TTA----------AAGTT-TATGC--TATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGAA--TAATGCAGA--ATTT-G-------AA----TN-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--TCC------AA-TCTTA-TNAAAT-GTCGACAG--ATAC--GGAGAAAAATATGGAA-CGCCAGAATGGT-AAAACATGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATATNAATCGTCATT--C-TTTTATTAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CGT-CA------ATT-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGGAAGGCAAGCGTCTAGTTAGATTTATAAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTA--ACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
Reference ( family-1503 ) : GTCCCATTGTATC--GTGC-TATT-TTTT-ATTTCCGTCGNTTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-GAAATCATGTTGTTGGG-TCAGAC-----AAT--ATAATTT-GAA--TTA----------AAGTT-TATGC--TATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGAA--TAATGCAGA--ATTT-G-------AA----TN-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--TCC------AA-TCTTA-TNAAAT-GTCGACAG--ATAC--GGAGAAAAATATGGAA-CGCCAGAATGGT-AAAACATGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATATNAATCGTCATT--C-TTTTATTAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CGT-CA------ATT-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGGAAGGCAAGCGTCTAGTTAGATTTATAAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTA--ACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
gi|1 : CATGTGCAACGCTTCCTTTGCGG-CAGGCTAG---TTTTGG--AATTAAAACAT-GAAATCTTGTTGTTGGG-TCAGACAATATAAT--TTGAATT-AAAGTTTATGCTATTGGTAAGTT-TCTGC--AA---AA-TAA--CTT-CAAATAATG--C-AG--AA---TTTGAATATTTCTAA--AAATACACC--AACT-A-------AG----AA-TTTAGA--AAA---ATA---TACATTATTTGGCTAATTTCAATTCTAATC---TTTTG--GAA-------TA-GTTT-CCA------AAATTTCCTCCAGCC--ATT-----TCC--------GCCGT--TAC------AAATCTTA-TTAAATTGTCGACAG--ACAC--GGAAAAATATAAGGAAACACCCGTATGGT-AAAAC-TTAATAAATATTTTCATGAAAACTTTAATTTGATTTGGATTTATTTCGATTT-CAAAG-TCATATA------TAAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATGTAAATCGTAATT--C-GT----------------------GTG-TGTG--AATGTGAAA--AAAATG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAAAGCAGCAACGCATCAAACATACATACCGAATTTCCCGTGCA------ATT-----------TTACATA--AAATC----------AT-CTAT---TTGTATTTAAAACAGGTCAAAGGTGAAAAGAAAGGCAAGCGTCTAGTAAGGTTTA-AAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------T--------------------ACAATGCAACTCTT----CAGTTTCAGCAAACGCAAAACAAACGGAGTTGCAGACCATGATTTTCACGAACTTAATGTGAAAAATTT------AATTGTTTTTATTGAGTCCGTTGAAAAAATTGTGTAGTTTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATTGAAATTATT--TAAC------TAGCACGATATACTGAGA
gi|10 : CA-ATGAACGTAAATTTAGATTTTTTTAA-CCATGCAAATTGTAATT--C-TTTTATTAGAGATAAAAAATTTTGCTG-TCTG--AATGTGAAA--AAG-TGTACTAGGAAAACTATATTTTTGG-TA-TTAAAAATC----ATTCATGTAcaccg
gi|11 : GGTTTTATTTCGATTT-CAAAG-TCATATACTCGTATAAT-AAATA-ATGAACATAAATTTAGATTTTTT-AAAGCATAGCAATGGTCATT--C-TTTTATCAAAGATAAGAATTTTTGGTG-TCTG--AATGTGAA
gi|12 : ACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCATTTATAACTACATGTAACACGATGCAGTGAAA
gi|13 : TGTTTTTATTGAGTCCGTTAAGAAAATGGTGTA--CTTTTTGAACATAACAAATATAACACAAAATAT-TGGTGTATTA-----------TTGAAAGCATT--TAAC------TAGCACGATATGGTGAGcaccgggctatgtaccatatatatcctaca
gi|14 : GTCCCATTGTATC--GTGC-TATTATTTT-ATTTCCGTCG-TTTACGCGTGTGCAACGCTTCCTTTGCAG-CAGATTAC---TTTTGG--AATTAAAACAT-GAAATcca
gi|15 : tatcgtgcAAG-TTTAC------TG--C-AA--AA---T----A-ACTTCAAA--TACTGCAGA--ATTT-G-------AA----TA-TTTCTA--AAA---ATA---C
gi|2 : GTCCCATTGTATC--GTGC-TATT-TTT--ATT-CCGTCGTTTTACGCATGTGCAACGCCTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACATTGAAATCATATTGTTGGG-CCAGAC-----AAT--ATAATTT-GAA--TTA----------AAATT-TATGC--TATT-GGGTAAG-TTT-C------TG--C-AA--AA---A----A-ACTTCAAA--TAATGCAGA--ATTTTG-------AA----AT-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTATTGAA----------ATATGACAA-----TTATTT-----GGTT--AAA-----TCC--------A--AT--TCC------AA-TCT----AAAA-----AACAG--ATAC--AGAGAAATATATGGAA-CGCTAGAATGGT-AAAAC-TGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTAATTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACATAAATTTAGATT---------------AATCGTCATT--C-TTTTATAAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAAGAAAACAATATTTTTGG-TA-TTAAAAATT----ATTTATCTACTA-TTCTTATTCACAGCGTAAACATTGAGCAACG-------------------------TGT--A------ATA-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGAAAGGCAAGCGTCTAGTAAGATTTA-AAGGA--A--ATATCGAATTA-T-CTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTACAATGTAGCACGATACAATGGAACTCTT----CAGTTTCATCAAACGCGAAGCAAACTAAATTGCAAACCATGCTTTTCACGAATTTAAAGAGAAAAAAAT-----TAATTGTTTTTATTGAATCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAGGGT-TAGTGTATTAGAATGTTTTTATTGAAAGCATT--TAAC------TAGCACGATACAATGAGA
gi|3 : GTTCCATTGTATC--GTGC-TATT-TTT--ATTTCCGTC-CTTTACGCACGTGCAACGCTTCCTTTGCGG-TAGTTTAT---CTTTTA--AATTAAAAGAG-GAAATCATGTTGTTGGG-TCAGAC-----AAT--ATAATTT-GAA--TTA----------AAATG-TATGC--AATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGGA--TAATGCAGA--ATTT-G-------AA----TA-TTTCTA--AAA---ATT---CGC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--TCA------AA-TGTTT-TGGAATCGTTTACAA--A
gi|3 : cttctcactgtatcgtgc-TCGGAT-----AATGCAGAATTT-GAA--T--------------ATT-T---C--TA-------AAA-ATT-C------GC--C-AACCAA---G----A-ATTTAGAA--TAATATACATTATTT-G-------GC----TAATTTC------A---ATT---CA------------------------AATG---TTTTG--GAA-------TC-GTTT-ACA------AAATTTCCTCAAGTC--ATT-----TTC--------A-------CCGTTAAAAA-TCTTAATAAAAT-GTCGACAG--ATAC--GGAGAAAAACATGGAA-CGCCAGAATGGT-AAAACATGATAAAATATTTTCATGAAAAATTTTATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATGTA------TGAT-AAACA-TTGAACATAAAATCAGATTCTTA-AA-GCATATTAATGGCCATT--CTTTTTATTAAAGAT--GAATTCTTGGTG-TCTG--AATGTGAAC--AAA-TG---TAGGAAAACAAT---------------AAAATC----ATTCATTTACTA-TACTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CAT-CA------ATC-----------ATGCATGCCAAATT----------atttcctcaagtcattttcaccgttaaaaatcttaataaaatgtcgacagatacggagaaaaacatggaacgccagaatggtaaaacatgataaaatattttcatgaaaaattttatttgatttggttttatttcgatttcaaagtcatgtatgataaacattgaacataaaatcagattcttaaagcatattaatggccattctttttattaaagatgaattcttggtgtctgaatgtgaacaaatgtaggaaaacaataaaatcattcatttactatacttattcacagcgtaaaaattgagcaacgcatcaatcatgcatgccaaatt
gi|4 : cttctcactgtatcgtgcgttccattgtatcgtgctatttttatttccgtcctttacgcacgtgcaacgcttcctttgcggtagtttatcttttaaattaaaagaggaaatcatgttgttgggtcagacaatataatttgaattaaaatgtatgcaattggtaagtttctgcaaaataactAA--ATAC--GGAGAAAAATATGAAA-CGCCAGAATGGTAAAAACATGGTAAAATATTTT-ATGAAAA----AACTT-------TTCTATTTCGATTTCCAAAGTTCATGTA------TAATAAAACATTTGAACATAAATTCAGATTTCTT-AA-GCATATTAAAGGTCAATACT-TTTTATTAAAGAT--GAATTCTCGGTGTTCTGGAGATGTGAAAACAAA-T----TAGGAAAACAATATTTTTGGTTATTTAAAAATCATTAATTCATTTACTATTTCTTATTCACAGCGTAAAAA-TGAGCAACG-------------------------CAT-CATCATGCATTTGCCGAATTCGTTCCGTGT-AAATTTTACATAAAAAT-ATATTATTTGTATTTAAAGCAGGTCAAA-GTAAAAAAGAAGGCAAGTGTCTAGTTAGATTTATAAGAAAGA--ATATCGAATTATT-GTCGCTG----TTT
gi|4 : aaCG-------------------------TGT-AA------ATT-----------TTACATA--AAAAT----------ATATTAT---TTGTATTTAAAGCAGGTCAAAG-TAAAAAAGAAGGCAAGTGTCTAGTTAGATTTATAAGAA--AGAATATCGAATTA-TTGTCGCTGTTTTTTTGGCCCCCGGGGCCGCCCCCCTTCTGTTTTAAAGGAAATTTTTTTGGAATTTTTTTGGAATG--ACGTAGCACGATACAATGGAACTCTTTGAACAGTTTttttggcccccggggccgccccccttctgttttaaaggaaatttttttggaatttttttggaatgacgtagcacgatacaatggaactctttgaacagttt
gi|5 : aaaaatacggagaaaaatatgaaacgccagaatggtaaaaacatggtaaaatattttatgaaaaaacttttctatttcgatttccaaagttcatgtataataaaacatttgaacataaattcagatttcttaagcatattaaaggtcaatactttttattaaagatgaattctcggtgttctggagatgtgaaaacaaattaggaaaacaatatttttggttatttaaaaatcattaattcatttactatttcttattcacagcgtaaaaatgagcaacgcatcatcatgcatttgccgaattcgttcGCCCCATTGTATCATGTGC-TATT-TTT--ATGTCCGTCGATT--------------GCTTCCTTCGAGG-CAGGCTAT---TTCTGG--AATTAGAACAT-GAAGTCA-------------AGA------AATCAATAATTT-GAA--TTA----------AAGTT-CATGC--TATT-GG-TAAA-ATT-C------TG--CAAA--AA---T----A-ACTTCAAA--TAATGCATA--ATTT-G-------AA----TT-TTTTTA--AAAAACATA---CAC----------------CAA--CCAAGA---ATTCA--GAA-------TA-ATGT-ACATTTATTTTATTT-----GGCT--AATGGAAATTCGTTTCCAAA--ATCCTCCAGTCAGAA-TCTGA-TTTAGT-GCCGACAGCTATACATGTAGAAAAAAAT
gi|5 : actgtatcgtgcTTCACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCATT--Ttcacataacaaatataacacaaaagctgcagtagattagaatgtttttatcgaaagcattt
gi|6 : actgtatcgtgcgccccattgtatcatgtgctatttttatgtccgtcgattgcttccttcgaggcaggctatttctggaattagaacatgaagtcaagaaatcaataatttgaattaaagttcatgctattggtaaaattctgcaaaaataacttcaaataatgcataatttgaatttttttaaaaaacatacaccaaccaagaattcagaataatgtacatttattttatttggctaatggaaattcgtttccaaaatcctccagtcagaatctgatttagtgccgacagctatacatgtagaaaaaaaGTCCCAT-GTATC--GTGC-AATT-TTTT-ATTTTCGTTGATT-ACGCATGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTTGCAAATTAAAACGT-GAAATCACGTTCTTGGGTTCAGAT-----AATG-ATAATTTAAAA--TTA----------AAGTT-CATGTTATATC-GG-TAAG-TTT-C------TGCCC-AA--AAAATT----A-ATTTCAAA--TAATGCAGA--ATTT-GCTTTTTTAA----TG-TTTTTATGAGA---GCATTTTAA----------------CAA--GCACGATACAGTGA--GAACCGGGCTTATATAT-ACA------CTTTTT-------CTAAAAT-----TTC--------A--A
gi|7 : tattcgctttctcactgtatcgttgcGTCCCATTGTATC--GTGCCTATT-TTTTTATTTCCGTTCGTTTACGCACGTGCAACGCTTCCTTTGCGGGCAGGTTATCTCTTTTTA--AATTAAAAGAG-GAAATCATGTT--TGGG-TCAGACC----AAT--ATTAATT-GAA--TTA----------AAGGTGTATGC--TATTTGG-TAAGGTTT-C------TG--C-AA--AAA--T----A-ACTTCGAAATTAAT-CAGA--ATTTTG-------AAATATTT-TTTCTA--AAA---A-A---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--T-C------AA-TGTT--TGGAAT-aaaatcttgaaataatattataaa
gi|8 : cacagctagtatcgtgcTCTAGTTAAATGTA-AAGAA--A--ATATCAAATTA-C-GTCGCTG----TTTG-----------CGG------TCTGT--------AGATTGATTTGA--------TGACGTA-------GCAGGATACAATGGAACTCTT----CAGTTTCAGCAAACGCAAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTTAGGCCTAATTGTTTTTATTGAGTCCTTTGAGAAAATTGTGTA--CTTTTTTAACATAATAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTCATTGAAAGCATT--TAAG------TAGCACAATACATTGAGAcgtttccaaaatttcctcagtcatt
gi|9 : ATTGT-AATAC-TGAATAAATATTTTCATCAACACTTTTATTTGATTTGGTATTATTTCGATTT-AAAAG-TC--ATA------TGAT-AAACA-ATGAACAAAAATTGAGATATTTT-AA-GCATATTAATCTTCATT--C-caccgggctatacaatttattttgta
blockSeqs : AT C . TT GT T T G CTC CA T T G T CC GC A . . G A TA TTT G GG A . CC A CC AATT . A AT TT GCTTTTTTAATG TG AAC TTT C . TAC TT CCGGGCTTAT G TTTATTT CCTCAA AA GGAAA GTTTCCAAAATCCTCCAGTCAG . TAA AA C CT AT T . A A AT C A C T CTCGTA A T G T A A T AC T T AA T T GA AC . TAC T T ATTA T T CATCATCATGCATTTGCCGAATTCG CC TTACATAAAA AT TAT GG A T AGA TT TTTT GCCCCCGGGGCCGCCCCCCT TTTAAAGG AATTTTTTTGGAATGACGTA C TGAA AGGCCT . C G TA TACATG G
blockSeqs : . . . T GA T T . . . . T G . C CA . . . . A . TT . G . . . . . AT . A . . TGAAATATTT . . . C . . . TA . AT G . . ACCGTTAAA . TT GG . . . A . . A TA A T . . . . . A . . C G . . C AA T . . . . . . . . . T CATCAATC T . C . G T T AGA TT . CGC . TGACGTACAATGTA C . T . A G . . G
blockSeqs : . . . . GA T C . . . . C C . C G . . . . A . TT . G . . . . . T . G . . TGAAAT . . . C . . . TC . T G . . AATTCC . GA AA . . . A . . . TA C A . . . . . A . . T C . . A AA C . . . . . . . . . . TGTAAATT . . A . G T . A T . CGG . TGACGTA G . . G . . . A
blockSeqs : . . . . CG . T . . . . T . . T . . . . . A . TT . G . . . . . A . G . . GGCTAA . . . A . . . TA . A G . . AATTCA . T TT . . . A . . AT . T . . . . . A . . T G . . T . T . . . . . . . . TGTAATA . . T . A C . C . . . T
blockSeqs : . . . . C . C . . . . . . . T . . . . . A . TC . A . . . . . T . A . . GAATA . . . C . . . TA . C G . . AATTC . . GG . . . . . . . A . . T G . . T . C . . G . .
blockSeqs : . . . . . . . . . . . . . . . . A . . . . . G . A . . GAATA . . . . . . . . . T . . . . A . . . C . .
blockSeqs : G . . . . . T . G . . GAATT . . .
blockSeqCons : ** GA C***** ** ********** TT* G* ****** T******* C**************** ** G***** AATTCA****************** AA A****
originalCons : GTCCCATTGTATC--GTGC-TATT-TTTT-ATTTCCGTCGNTTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-GAAATCATGTTGTTGGG-TCAGAC-----AAT--ATAATTT-GAA--TTA----------AAGTT-TATGC--TATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGAA--TAATGCAGA--ATTT-G-------AA----TN-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT--TCC------AA-TCTTA-TNAAAT-GTCGACAG--ATAC--GGAGAAAAATATGGAA-CGCCAGAATGGT-AAAACATGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATATNAATCGTCATT--C-TTTTATTAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CGT-CA------ATT-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGGAAGGCAAGCGTCTAGTTAGATTTATAAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTA--ACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
finalCons : GTCCCATTGTATC--GTGC-TATT-TTT--ATTTCCGTCGATTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-GAAATCATGTTGTTGGG-TCAGAC-----AAT--ATAATTT-GAA--TTA----------AAGTT-TATGC--TATT-GG-TAAG-TTT-C------TG--C-AA--AAT-------A-ACTTCGAA--TAATGCAGA--ATTT-G-------AA----TN-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTTG-----GCT--AAT-----TTCAATTCA------------------AA-TCTTA-TNAAAT-GTCGACAG--ATAC--GGAGAAAAATATGGAA-CGCCAGAATGGT-AAAACATGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATATNAATCGTCATT--C-TTTTATTAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CGT-CA------ATT-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGGAAGGCAAGCGTCTAGTTAGATTTATAAGAAA----ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTA--ACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GGCTACATTTTGTTGTTTTTGCACCAAAAGAAAAAAAAATCAAATTCTGCGAGAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 111 22 11111 2222222222 111 111111 22222222 222222222222222222 33333333333333333 111 2222222222 2222222 333333 11111 4444444444444444444444 222 1 11 1 2 111111 11 11 111 1111 1 111111111111111111111111111111111111111111111111111 11 3333333333 11 111 2 11111 111 1111 55555555555555555555 33333333 6666666666666666666666 2222 444444 11 1 222222
lowQualScore : 99 6 99 55 4 7 2 5 000 0 77 5 1 6 5 77 11 44444 5 77 5555555555 5 1 77 000 5 55 5 444444 66 5 66 11111111 5 1 66 0 66 111111111111111111 0 66 888 888 88888888888888888 77 000 77 0000000000 0 5 2222222 000000 77 44444 1111111111111111111111 5 6 111 1 3 99 11 1 0 8 0 22 5 1 6 6 999999 6 5 1 0 5 5 3 3 77 5 1 44 2 6 99 11 8 444 0 8 8 7777 0 9 000000000000000000000000000000000000000000000000000 99 5555555555 00 777 55 1 0 33333 000 7777 22222222222222222222 66666666 9999999999999999999999 2 1111 0 000000 33 1 3 0 99 333333 1
lowQualScore : .. . .. .. . . . . ... . .. . . . . .. .. ..... . .. .......... . . .. ... . .. . ...... .. . .. ........ . . .. . .. .................. . .. ... ... ................. .. ... .. .......... . . ....... ...... .. ..... ...................... . . ... . . .. .. . . . . .. . . . . ...... . . . . . . . . .. . . .. . . .. .. . ... . . . .... . . ................................................... .. .......... .. ... .. . . ..... ... .... .................... ........ ...................... . .... . ...... .. . . . .. ...... .
lowQualScore : 22 7 22 88 2 3 7 7 000 7 99 7 7 7 7 44 44 33333 7 99 0000000000 7 4 99 777 7 22 0 444444 99 0 99 66666666 0 1 99 2 99 111111111111111111 1 99 888 888 66666666666666666 99 000 99 1111111111 6 7 7777777 333333 99 33333 6666666666666666666666 7 7 333 0 3 22 00 4 0 0 4 88 0 4 7 7 222222 7 7 4 1 7 7 0 0 99 7 8 33 2 7 22 00 0 000 8 0 0 0000 0 8 000000000000000000000000000000000000000000000000000 00 0000000000 22 555 00 4 4 00000 000 0000 55555555555555555555 22222222 0000000000000000000000 5 2222 7 777777 88 0 3 7 22 000000 0
consensus : GTCCCATTGTATC--GTGC-TATT--TTT--ATTTCCGTCG-TTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-GAAATCATGTTGTTGGG-TCAGAC-AAT--ATAAT-----TT-GAA--TTA----------AAGTT-TATGC--TATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGAA--TAATGCAGA--ATTT-G-------AA----TN-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT-------T-CA-AA-TCTTA-TNAAAT-GTCGACAG--ATAC--GGAGAAAAATATGGAA-CGCCAGAATGGT-AAAACATGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATATNAATCGTCATT--C-TTTTATTAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CGT-CA------ATT-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGGAAGGCAAGCGTCTAGTTAGATTTATAAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTA--ACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
Reference ( family-1503 ) : GTCCCATTGTATC--GTGC-TATT--TTT--ATTTCCGTCGATTTACGCACGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACAT-GAAATCATGTTGTTGGG-TCAGAC-AAT--ATAAT-----TT-GAA--TTA----------AAGTT-TATGC--TATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGAA--TAATGCAGA--ATTT-G-------AA----TN-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT-------T-CA-AA-TCTTA-TNAAAT-GTCGACAG--ATAC--GGAGAAAAATATGGAA-CGCCAGAATGGT-AAAACATGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATATNAATCGTCATT--C-TTTTATTAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CGT-CA------ATT-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGGAAGGCAAGCGTCTAGTTAGATTTATAAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTA--ACGTAGCACGATACAATGGAACTCTT----CAGTTTCAGCAAACGCGAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTT-----TAATTGTTTTTATTGAGTCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATCGAAAGCATT--TAAC------TAGCACGATACANTGAGA
gi|1 : CATGTGCAACGCTTCCTTTGCGG-CAGGCTAG---TTTTGG--AATTAAAACAT-GAAATCTTGTTGTTGGG-TCAGAC-AAT--ATAATTTGAATT-AAAGTTTATGCTATTGGTAAGTT-TCTGC--AA---AA-TAA--CTT-CAAATAATG--C-AG--AA---TTTGAATATTTCTAA--AAATACACC--AACT-A-------AG----AA-TTTAGA--AAA---ATA---TACATTATTTGGCTAATTTCAATTCTAATC---TTTTG--GAA-------TA-GTTT-CCA------AAATTTCCTCCAGCC--ATT-----TCC--------GCCGT-------TACA-AA-TCTTA-TTAAATTGTCGACAG--ACAC--GGAAAAATATAAGGAAACACCCGTATGGT-AAAAC-TTAATAAATATTTTCATGAAAACTTTAATTTGATTTGGATTTATTTCGATTT-CAAAG-TCATATA------TAAT-AAACA-ATGAACGTAAATTTAGATTTTTT-AA-GCATGTAAATCGTAATT--C-GT----------------------GTG-TGTG--AATGTGAAA--AAAATG---TAGGAAAACAATATTTTTGG-TA-TTAAAAATC----ATTCATTTACTA-TTCTTATTCACAGCGTAAAAAAGCAGCAACGCATCAAACATACATACCGAATTTCCCGTGCA------ATT-----------TTACATA--AAATC----------AT-CTAT---TTGTATTTAAAACAGGTCAAAGGTGAAAAGAAAGGCAAGCGTCTAGTAAGGTTTA-AAGAA--A--ATATCGAATTA-T-GTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------T--------------------ACAATGCAACTCTT----CAGTTTCAGCAAACGCAAAACAAACGGAGTTGCAGACCATGATTTTCACGAACTTAATGTGAAAAATTT------AATTGTTTTTATTGAGTCCGTTGAAAAAATTGTGTAGTTTTTTTTAACATAACAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTTATTGAAATTATT--TAAC------TAGCACGATATACTGAGA
gi|10 : CA-ATGAACGTAAATTTAGATTTTTTTAA-CCATGCAAATTGTAATT--C-TTTTATTAGAGATAAAAAATTTTGCTG-TCTG--AATGTGAAA--AAG-TGTACTAGGAAAACTATATTTTTGG-TA-TTAAAAATC----ATTCATGTAcaccg
gi|11 : GGTTTTATTTCGATTT-CAAAG-TCATATACTCGTATAAT-AAATA-ATGAACATAAATTTAGATTTTTT-AAAGCATAGCAATGGTCATT--C-TTTTATCAAAGATAAGAATTTTTGGTG-TCTG--AATGTGAA
gi|12 : ACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCATTTATAACTACATGTAACACGATGCAGTGAAA
gi|13 : TGTTTTTATTGAGTCCGTTAAGAAAATGGTGTA--CTTTTTGAACATAACAAATATAACACAAAATAT-TGGTGTATTA-----------TTGAAAGCATT--TAAC------TAGCACGATATGGTGAGcaccgggctatgtaccatatatatcctaca
gi|14 : GTCCCATTGTATC--GTGC-TATTATTTT--ATTTCCGTCG-TTTACGCGTGTGCAACGCTTCCTTTGCAG-CAGATTAC---TTTTGG--AATTAAAACAT-GAAATcca
gi|15 : tatcgtgcAAG-TTTAC------TG--C-AA--AA---T----A-ACTTCAAA--TACTGCAGA--ATTT-G-------AA----TA-TTTCTA--AAA---ATA---C
gi|2 : GTCCCATTGTATC--GTGC-TATT--TTT--ATT-CCGTCGTTTTACGCATGTGCAACGCCTCCTTTGCGG-CAGGTTAT---TTTTGG--AATTAAAACATTGAAATCATATTGTTGGG-CCAGAC-AAT--ATAAT-----TT-GAA--TTA----------AAATT-TATGC--TATT-GGGTAAG-TTT-C------TG--C-AA--AA---A----A-ACTTCAAA--TAATGCAGA--ATTTTG-------AA----AT-TTTCTA--AAA---ATA---CAC----------------CAA--CCAAGA---ATTTATTGAA----------ATATGACAA-----TTATTT-----GGTT--AAA-----TCC--------A--AT-------T-CC-AA-TCT----AAAA-----AACAG--ATAC--AGAGAAATATATGGAA-CGCTAGAATGGT-AAAAC-TGAATAAATATTTTCATGAAAACTTTAATTTGATTTGGTTTTAATTCGATTT-CAAAG-TCATATA------TGAT-AAACA-ATGAACATAAATTTAGATT---------------AATCGTCATT--C-TTTTATAAAAGATAAGAATTTTCGGTG-TCTG--AATGTGAAA--AAA-TG---TAAGAAAACAATATTTTTGG-TA-TTAAAAATT----ATTTATCTACTA-TTCTTATTCACAGCGTAAACATTGAGCAACG-------------------------TGT--A------ATA-----------TTACATA--AAATT----------AT-CTAT---TTGTATTTAAAGCAGGTCAAAGGTAAAAAGAAAGGCAAGCGTCTAGTAAGATTTA-AAGGA--A--ATATCGAATTA-T-CTCGCTG----TTTG-----------CGC------TCTGT--------AGATTGATTTGA--------TGACGTACAATGTAGCACGATACAATGGAACTCTT----CAGTTTCATCAAACGCGAAGCAAACTAAATTGCAAACCATGCTTTTCACGAATTTAAAGAGAAAAAAAT-----TAATTGTTTTTATTGAATCCGTTGAGAAAATTGTGTA--CTTTTTTAACATAACAAATATAACACAAAGGGT-TAGTGTATTAGAATGTTTTTATTGAAAGCATT--TAAC------TAGCACGATACAATGAGA
gi|3 : GTTCCATTGTATC--GTGC-TATT--TTT--ATTTCCGTCC-TTTACGCACGTGCAACGCTTCCTTTGCGG-TAGTTTAT---CTTTTA--AATTAAAAGAG-GAAATCATGTTGTTGGG-TCAGAC-AAT--ATAAT-----TT-GAA--TTA----------AAATG-TATGC--AATT-GG-TAAG-TTT-C------TG--C-AA--AA---T----A-ACTTCGGA--TAATGCAGA--ATTT-G-------AA----TA-TTTCTA--AAA---ATT---CGC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT-------T-CA-AA-TGTTT-TGGAATCGTTTACAA--A
gi|3 : cttctcactgtatcgtgc-TCGGAT-AATGCAGAAT-----TT-GAA--T--------------ATT-T---C--TA-------AAA-ATT-C------GC--C-AACCAA---G----A-ATTTAGAA--TAATATACATTATTT-G-------GC----TAATTTC------A---ATT---CA------------------------AATG---TTTTG--GAA-------TC-GTTT-ACA------AAATTTCCTCAAGTC--ATT-----TTC--------ACCGT-------T-AA-AAATCTTAATAAAAT-GTCGACAG--ATAC--GGAGAAAAACATGGAA-CGCCAGAATGGT-AAAACATGATAAAATATTTTCATGAAAAATTTTATTTGATTTGGTTTTATTTCGATTT-CAAAG-TCATGTA------TGAT-AAACA-TTGAACATAAAATCAGATTCTTA-AA-GCATATTAATGGCCATT--CTTTTTATTAAAGAT--GAATTCTTGGTG-TCTG--AATGTGAAC--AAA-TG---TAGGAAAACAAT---------------AAAATC----ATTCATTTACTA-TACTTATTCACAGCGTAAAAATTGAGCAACG-------------------------CAT-CA------ATC-----------ATGCATGCCAAATT----------atttcctcaagtcattttcaccgttaaaaatcttaataaaatgtcgacagatacggagaaaaacatggaacgccagaatggtaaaacatgataaaatattttcatgaaaaattttatttgatttggttttatttcgatttcaaagtcatgtatgataaacattgaacataaaatcagattcttaaagcatattaatggccattctttttattaaagatgaattcttggtgtctgaatgtgaacaaatgtaggaaaacaataaaatcattcatttactatacttattcacagcgtaaaaattgagcaacgcatcaatcatgcatgccaaatt
gi|4 : cttctcactgtatcgtgcgttccattgtatcgtgctatttttatttccgtcctttacgcacgtgcaacgcttcctttgcggtagtttatcttttaaattaaaagaggaaatcatgttgttgggtcagacaatataatttgaattaaaatgtatgcaattggtaagtttctgcaaaataactAA--ATAC--GGAGAAAAATATGAAA-CGCCAGAATGGTAAAAACATGGTAAAATATTTT-ATGAAAA----AACTT-------TTCTATTTCGATTTCCAAAGTTCATGTA------TAATAAAACATTTGAACATAAATTCAGATTTCTT-AA-GCATATTAAAGGTCAATACT-TTTTATTAAAGAT--GAATTCTCGGTGTTCTGGAGATGTGAAAACAAA-T----TAGGAAAACAATATTTTTGGTTATTTAAAAATCATTAATTCATTTACTATTTCTTATTCACAGCGTAAAAA-TGAGCAACG-------------------------CAT-CATCATGCATTTGCCGAATTCGTTCCGTGT-AAATTTTACATAAAAAT-ATATTATTTGTATTTAAAGCAGGTCAAA-GTAAAAAAGAAGGCAAGTGTCTAGTTAGATTTATAAGAAAGA--ATATCGAATTATT-GTCGCTG----TTT
gi|4 : aaCG-------------------------TGT-AA------ATT-----------TTACATA--AAAAT----------ATATTAT---TTGTATTTAAAGCAGGTCAAAG-TAAAAAAGAAGGCAAGTGTCTAGTTAGATTTATAAGAA--AGAATATCGAATTA-TTGTCGCTGTTTTTTTGGCCCCCGGGGCCGCCCCCCTTCTGTTTTAAAGGAAATTTTTTTGGAATTTTTTTGGAATG--ACGTAGCACGATACAATGGAACTCTTTGAACAGTTTttttggcccccggggccgccccccttctgttttaaaggaaatttttttggaatttttttggaatgacgtagcacgatacaatggaactctttgaacagttt
gi|5 : aaaaatacggagaaaaatatgaaacgccagaatggtaaaaacatggtaaaatattttatgaaaaaacttttctatttcgatttccaaagttcatgtataataaaacatttgaacataaattcagatttcttaagcatattaaaggtcaatactttttattaaagatgaattctcggtgttctggagatgtgaaaacaaattaggaaaacaatatttttggttatttaaaaatcattaattcatttactatttcttattcacagcgtaaaaatgagcaacgcatcatcatgcatttgccgaattcgttcGCCCCATTGTATCATGTGC-TATT--TTT--ATGTCCGTCGATT--------------GCTTCCTTCGAGG-CAGGCTAT---TTCTGG--AATTAGAACAT-GAAGTCA-------------AGA--AATCAATAAT-----TT-GAA--TTA----------AAGTT-CATGC--TATT-GG-TAAA-ATT-C------TG--CAAA--AA---T----A-ACTTCAAA--TAATGCATA--ATTT-G-------AA----TT-TTTTTA--AAAAACATA---CAC----------------CAA--CCAAGA---ATTCA--GAA-------TA-ATGT-ACATTTATTTTATTT-----GGCT--AATGGAAATTCGTTTCCAAA--ATCCTCCAGT-CAGAA-TCTGA-TTTAGT-GCCGACAGCTATACATGTAGAAAAAAAT
gi|5 : actgtatcgtgcTTCACATAACAAATATAACACAAAAGCTGCAGTAGATTAGAATGTTTTTATCGAAAGCATT--Ttcacataacaaatataacacaaaagctgcagtagattagaatgtttttatcgaaagcattt
gi|6 : actgtatcgtgcgccccattgtatcatgtgctatttttatgtccgtcgattgcttccttcgaggcaggctatttctggaattagaacatgaagtcaagaaatcaataatttgaattaaagttcatgctattggtaaaattctgcaaaaataacttcaaataatgcataatttgaatttttttaaaaaacatacaccaaccaagaattcagaataatgtacatttattttatttggctaatggaaattcgtttccaaaatcctccagtcagaatctgatttagtgccgacagctatacatgtagaaaaaaaGTCCCAT-GTATC--GTGC-AATT--TTTT-ATTTTCGTTGATT-ACGCATGTGCAACGCTTCCTTTGCGG-CAGGTTAT---TTTTTGCAAATTAAAACGT-GAAATCACGTTCTTGGGTTCAGAT-AATG-ATAAT-----TTAAAA--TTA----------AAGTT-CATGTTATATC-GG-TAAG-TTT-C------TGCCC-AA--AAAATT----A-ATTTCAAA--TAATGCAGA--ATTT-GCTTTTTTAA----TG-TTTTTATGAGA---GCATTTTAA----------------CAA--GCACGATACAGTGA--GAACCGGGCTTATATAT-ACA------CTTTTT-------CTAAAAT-----TTC--------A--A----------AA-AA-TCT---TGAAAT-
gi|7 : tattcgctttctcactgtatcgttgcGTCCCATTGTATC--GTGCCTATT--TTTTTATTTCCGTTCGTTTACGCACGTGCAACGCTTCCTTTGCGGGCAGGTTATCTCTTTTTA--AATTAAAAGAG-GAAATCATGTT--TGGG-TCAGACCAAT--ATTAA-----TT-GAA--TTA----------AAGGTGTATGC--TATTTGG-TAAGGTTT-C------TG--C-AA--AAA--T----A-ACTTCGAAATTAAT-CAGA--ATTTTG-------AAATATTT-TTTCTA--AAA---A-A---CAC----------------CAA--CCAAGA---ATTTA--GAA-------TA-ATAT-ACA------TTATTT-----GGCT--AAT-----TTC--------A--AT-------T-CA-Aaatattataaa
gi|8 : cacagctagtatcgtgcTCTAGTTAAATGTA-AAGAA--A--ATATCAAATTA-C-GTCGCTG----TTTG-----------CGG------TCTGT--------AGATTGATTTGA--------TGACGTA-------GCAGGATACAATGGAACTCTT----CAGTTTCAGCAAACGCAAAGCAAACGAAGTTGCAGACCATGATTTTCACGAATTTAAAGAGAAAAATTTAGGCCTAATTGTTTTTATTGAGTCCTTTGAGAAAATTGTGTA--CTTTTTTAACATAATAAATATAACACAAAAGGT-TAGTGTATTAGAATGTTTTCATTGAAAGCATT--TAAG------TAGCACAATACATTGAGAtgtttggaatcgtttccaaaatttcctcagtcatt
gi|9 : ATTGT-AATAC-TGAATAAATATTTTCATCAACACTTTTATTTGATTTGGTATTATTTCGATTT-AAAAG-TC--ATA------TGAT-AAACA-ATGAACAAAAATTGAGATATTTT-AA-GCATATTAATCTTCATT--C-caccgggctatacaatttattttgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GGCTACATTTTGTTGTTTTTGCACCAAAAGAAAAAAAAATCAAATTCTGCGAGAT