lowQualScore : 111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 1 111 1 11111 111 1111 2 4444444444444444444 2222222 111 1 11 11 11 11 44444444444444 111111 33333 11 111 1 000000000000000000000000000000 1111 33333 22222 11 111 3333333333 111 22222 4444444 666666666666666 2 1111111111 11 222 111 11 222 22 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 3333333333333333333333333333333 1 111 000000000000000000000000000000000000000000000000000 1 1111 111 333333 333333333333333333 444444444444444444444444 11 1111 1111111 2222 222222222 111 11111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222 11 1
lowQualScore : 2 8 22 8 8 1 222 3 0 6 999 0 55555 222 0 0 66 7777 0 5 3333333333333333333 1111111 111 5 44 99 00 2 1 6 00 11 33333333333333 0 777777 22222 55 33 777 0 777777777777777777777777777777 8 7777 8 8 0 33333 0 8 8 00000 11 666 8 8 0000000000 8 8 0 8 444 8 00000 0 8 8 8 8 9999999 5 444444444444444 8 0 0 8 0 9999999999 0 44 44 8 000 000 33 111 8 0 8 5 8 77 8 6 6 6 2 1 4 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 0 2222222222222222222222222222222 11 5 1 5 222 0 55 111111111111111111111111111111111111111111111111111 777 3 4 99 5555 888 4 4 8888 88 0 777 5 5 555555 5 2 5 777777777777777777 2 5 666666666666666666666666 11 0 5 3333 1111111 5 5 77 1 5 77 77 5 3333 1 111111111 555 11111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333333 8 11 5
lowQualScore : . . .. . . . ... . . . ... . ..... ... . . .. .... . . ................... ....... ... . .. .. .. . . . .. .. .............. . ...... ..... .. .. ... . .............................. . .... . . . ..... . . . ..... .. ... . . .......... . . . . ... . ..... . . . . . ....... . ............... . . . . . .......... . .. .. . ... ... .. ... . . . . . .. . . . . . . . ........................................................................................................................................................ . . ............................... .. . . . ... . .. ................................................... ... . . .. .... ... . . .... .. . ... . . ...... . . . .................. . . ........................ .. . . .... ....... . . .. . . .. .. . .... . ......... ... ..... ............................................................................................................... ...... . .. .
lowQualScore : 5 3 00 0 0 4 222 2 0 5 888 4 22222 111 8 8 44 4444 8 0 0000000000000000000 0000000 777 2 22 22 88 5 7 7 33 00 88888888888888 8 222222 55555 22 00 555 0 222222222222222222222222222222 0 0000 0 0 8 00000 8 0 0 00000 00 000 0 0 2222222222 0 0 8 0 000 0 44444 8 0 0 0 2 0000000 6 666666666666666 0 8 0 0 8 4444444444 8 00 44 0 666 000 00 222 0 8 0 6 0 88 0 7 7 7 3 7 9 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 1 5555555555555555555555555555555 11 0 4 0 666 4 11 111111111111111111111111111111111111111111111111111 888 3 0 55 0000 333 0 0 5555 66 8 333 7 7 666666 7 1 7 333333333333333333 3 7 999999999999999999999999 99 7 7 6666 7777777 7 7 99 6 4 99 99 7 1111 4 777777777 777 77777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 000000 0 00 0
consensus : TTCNAATATCTT-TTATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATNAACAATT----CTTCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCNTTGCTTTGATCCCTTCTTT-TCTTTTTTTTCTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTGACA-CCATCCA----TCGTTG---CA-GCAGAGTNATATTCTCTGTCAGG---C-AGATTCT-----A---------CCATCTCCTT-----TTTACT-A----AGTCA-TTG-TTTTGTTCATCAGGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCT-AC-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TT---CTGAAAT-TTCTGG-TCAT-CTTCTGGCACATTATAGGT---TTTGAAACCTAAT-CGTATCG-CGTAACCATCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTT-CTGTA-CAAT-TGAA-A-ATT-GCCTT--CTTTCAA-TGATCTG-ATGAA-CAGTGATTACTACTA-ACGGG-CG-CCA-TTTTAAGAGATGACGGCCATATTTAAA--------------------T-TT-TAC-----AA--------ATCTC---------AATC-AT-AAGAG-CTTTCTAAGTA-------TAACCACCA-TAG-ATCAATCGTAT-A---------A---ATT--TTGAA--CCNA-N-AGCATTGAAAATAGTG-----------AT-GC--T------------ATCAAA-CAAACAA-G-CAAAACATA-TACA-T-----GT----A-C----C---AT-----AT---GGCGGGGC-GG---GGC---CA-T-TT--GAAA--A-TGGC-GGC-C-ATA----TTGAATTT--TACTAATTTC-GATTA-TTA-GAGC-T--T-TCNAA-ATAAC--CACCANTAT-------ATTAATC-G-AGG-----ATAT-TTTTG-----AAAGTGCTA-GCATTG--AAAATAG---TGA-TG-C-T--ATTTAAC--AA--ACA-ATGGA--AAACATAT-----GCC-AT---AT-G--GCGGCCA--CGGNNATNNNGGNNANNGTGGNCNTNNCGANNTNNGNNCGTNGGTNNNNNNNNNNCGTNGACCNNCAGGCTNAGANNNNCNNCNNNNCNAGATCGGNNNTTTCCTCATCAAGTGA------GCAATTTTT-TCAC-CAATCAGCCGGAGTA
Reference ( gi|2 ) : TTCCAAAATCTT-CTATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--GGATTAACAATT----CTTTG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGGTTTGATCCCTTCTTTTTCTTTTCTTTCTTTTTTTT----A--TCA---ATTATTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTGATA-CGATCCA----TCGTTG---CA-GCAGGGCCACATTCTCTGTCTGG---C-AGATTCT-----A---------C--------T-----TTTACT-A----AGTCA-TTG-TTTTGTTAAT--GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCT-AC-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TT---CGGAAAT-TTCTGG-TCAT-CTTCTGGCACATTAT-------TTTGAAACCTAAT-AATATCG-CGTAACCATCT-AGTATAGTGTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTT-CTGTA-CATT-TGAA-A-ATT-GCCTT--TTTTCAA-TGATCTG-ATGAA-CAGTGA-AACTACTA-ACGGG-CG-CCA-TTTTAAGAGATGACGGCCATATTTAGA--------------------T-TA-TAC-----AA--------ATCTC---------AAGT-AT-AAGAG-CTTTCTAAGTACAT-ATGTAACCATCA-TAG-ATCAATTGTAT-A---------A---ATT--TTGAA--CCTA-A-AACATTAAAAATAGTG-----------AT-GC--T------------ATCAAA-CAAGCAA-G-CGAAACATA-TACA-T-----GT----A-C----C---AT-----AT---GGCGGGGC-GGG--GGC---CA-T-TT--GAAA--G-TGGC-AGC-C-ATA----TTGAATTT--TACTAATTTC-AGTTA-TTA-GAA--T--T-TCAAA-ATAAC--C-CCATTAT-------ATTAATC-G-AGG-----ATAT-TTTTG-----AAGGTGCTA-GCATTG--AAAATAG---TTA-TG-C-T--ATTTAAC--AA--ACA-ATGG---AAACATAT-----GCC-AT---AT-G--GCGGCCA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGA------GCAATTTTT-TCAC-TAATCAGCCGGACTATA
gi|14 : TTCGAATATCTT-TTATCCATTC-TATC-TGTATCATTATTCTTG-TCTCTA--AGATGAACAATT----CTTCG--CTCT
gi|6 : aattacatgtactttcaatcagtctgttacaagctggtgaaattgctgttTTCCAATATCTT-TTATCCATTC-TAGC-TGCATCAGTCTCTT
gi|3 : atttttgaacaactacttgttcccttctacttgccaaaaagcttcccaatggcctgaaactttagaatctggtaaaacaatctttcttctcagaccctttcctcttctagatttttccaatgttttcaggctgtctgaaaaatacttgctccaaattataccaactcgtctgacactatcttcaaacgtcttaacacccccccccttttttttttgtcttcagcatgttgataaagacaacaccatcaatggcaaaagtatcaactttcggagcctcgcaacttaattaatattcagaaatattttgtagcaaaacaagacccgatttttattcatgccattaatcacaaaattgtcattgagattatggatatgcttagttgtcatgtttataaaaacgtcataagatcaccatttcgaacttgacgtgaaacatgtaactgagaaaagagagaagagctttgtttcaatgacgcaatctgttgtgttctaggttgttgacaactaaatacaacttgcttgttttgcttactgggttcgtatatagactttgaactactttcaatcagtctgctacaagctggtgaaattgctgttAATTCTTGCTATCCATTC-TAGCCTGAATCAT-ATCCT-G-TCTATATAAGAT-AACAATT------TCG--CTCTGTTC-TGATGCCT--AACCTGGT-CAAT-GCTTTGATCC--TCTTTCTTTTTTTTTTCCTGG--------A--TCA---ATTATTA-------------------TAT-C-TGAGATATTT--TCGAC--CT-ATA-CA---C-----TTGT-G---CACACA---TCACATTCTCTGTCAGG---C-AGATTCT-----A---------CCATCTCCTT-----TTTACT-A----AGTCA-TTG-CTTTGTTCACCAGGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----GCTCGAGATTCT-AC-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TT---CTGAAAT-TTCTGG-TCAT-CTTTTGGTACATTACAGGTAG-TTTGAAACCTAAT---------------CATCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTT-TTGTA-CAAT-TGAA-A-ATT-GCCTT--CTTTCAA-TGATCTG-ATGAA-CAGTGA-TACTACTA-ACGGG-CG-CCA-TTTTAAGAGATGACAGCCATATCTAAA--------------------T-TT-TAC-----AA--------GTCTTTTAACTCTTAATC-AT-AAGAG-CTTTCTAAGTA---------ACCACCA-TG-----------------------------TT--TTGAA--CCAA-T-AGCATTGAAAATAGTG-----------AT-GC--TTATAATCATGCTATCAAA-CAAACAA-G-C-AAACATA-TACA-T-----GT----A-CTTACC---AT-----AT---GGCGG-----------C---CA-T-TTT-GAAA--A-TGGCTGGC-C-ATA----TTGAATTT--TACTCATTTC-AATTA-TTA-GAGC-T--T-TCAAA-ATAAC--CACCAT-AT-------ATTAATC-G-AGGGA---ATAT-TTT-------AAAGTGCTA-GCATTG--AAAATAG---TGA-TG-C-T--ATTTAAC--AA--ACA-ATGGA--AAA------------C-AT---AT-GCCNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGA------GCAATTTTT-TCAC-CAATCAGCCact
gi|4 : ttcTT-TTTTCCATTCCTATC-TGTATCGATATTCTTG-T-TCTC--AGATGAACAATT----CTTCGTCTTCTGTTCatgag
gi|1 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttttcgaaTATCCATTC-TAGC-TGCATCAT--TCCTTGTTTTCTA--AGATTGACCACA----TTTCG--CTCTGTcaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaactttttgttcgtgtgcttaagctggtcttgccttttggatcttttttttattatcaattttgattcgatttatttattacctgttatcttggaacctgacccatcctcgttgggacgcaggtatttttctgtcaggcaagattctgaatcactattcctttactgaagttattgttttgaccatcgggtctgtcgattattcagcaagtatattgctaaaattctaactacgagatttcttcaaacgattttttcagttttgaatttggtcatcttctggcaattatttgagaacctaatcatagtgcgtaacaatctagtacgtttgggtgatcaagtaaaacaataagaggtagtgaatacagtttcctgtagcattggagattccttacttttcaatgatctgatacagtgattactgatagacgggccgcccatttttgagatgaggccatatttaatttattacaaattgtaatcataagagctttttaattaacccagtagataattgtataaaattattgaaactatggcattaaaacagtgatgcttcatgcaaaaagcataataactatacatatggcagccattttgaaaatggcagccatattgaattttact
gi|4 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgtatttctagTTAATAGTTGGAACTTT-----TTGTTCGTG-TG-CTTAAG-CTGGT-C--TTG--------CCTTTTGGATCTTT------TTTTTATT----A--TCA---ATT-TTGATTCG--ATTT--ATTTATTA--CCTG-T-TATCTT-GGAAC--CTGAC--CCATCC-----TCGTTGGGAC--GCAGG--TAT-TTTTCTGTCAGG---CAAGATTCTGAATCA---------C--------TATTCCTTTACTGA----AGTTA-TTG-TTTTGACCATC-GGGTCTG-TCGA-TT-ATTCAGCAAG--TA---TA-TT-GCT-----A----AAATTCTAAC-TACGAGATTTCTTCA-AACGAT-TTTTTC---AGTT---TTGAA----TTTGG-TCAT-CTTCTGGCA-ATTAT-------TTGAGAACCTAAT-CATAGTG-CGTAACAATCT-AGTAC-GTTTGGGTGATCAAGTA--AAAC-AATAAGAG-----GTAGTG-AATACAGTTTCCTGTAGCA-T-TGGA-G-ATT--CCTTACTTTTCAA-TGATCTG-AT--A-CAGTGATTACTGATAGACGGGCCGCCCA-TTTT-TGAGATGA-GGCCATATTTAAT--------------------T-TATTAC-----AA--------ATTGT---------AATC-AT-AAGAG-CTTTTTAA-T--------TAACC--CAGTAG-AT-AATTGTATAA---------A---ATTA-TTGAA--ACTA-T-GGCATT-AAAACAGTG-----------AT-GC--T-------------TCATG-CAAA-AA-G-CATAATA----AC--T-----AT----A------C---AT-----AT---GGC-----------AGC---CATT-TT--GAAA--A-TGGC-AGC-C-ATA----TTGAATTT--TACTatccaggaaagataacttatatcctctacaagtgaacagaggagtttacttgttttgaaatgtgtaattatagttacctgttggtgatgccttaacctggcgccattgtttgatcctttttatcttttttttaatcaattcttgattcgacatcttgatttattacgcctgagtatttcgtggacgcctgacatccaataatcgttgcaggagagcgtattttttgttagagacagattctaaccgagtctcttttgatagtagagtcaattgtttgttcatgggtctgatctattcacaagagtagcctaatcagctgaaattctactagcagatttttcacaagatattttcccagattacgtgaaaatgttctggtcatacttctggcaatttatttgagacctaatcagtatcggcgtaacaatctcagtacagtttggggtatcaagcacaagcaaacgaaaagtgaaatacgtttctgtgaataatgaaattttttctctttcaatgactgatgaaacagtgataatactaacgggcgccagttttaaatattgacgccaactttaaatgtttacgcacaaaatcttaaatgaaaagcagtattttaagtaacctagatcaattatgtagataacacaaattgcttgaaccctatagattaaaaatagtaatcgcattgtcaaaacaaccaaggcaaaacataatacattataaatgccggcatctgaaatggcacggccaatagctgcttgaaagatggagagcacataagacttgaatttgactaatttcgcgtatttagaactgttcagataggacagcacagtatagattgcattaatcgagggaataataattatgtggttaaggtgctaggcattggaaaaatagatattagtgtctatattacaaagaaaatggagaaagcaaataggtggccgatatcgacggccattggttgaaaaatgagcggccatattgaattttgcgagtgggctcataagctaatattgatgtagtagacagcataaatgtgagccaacaacgaccaaagttttgtcgtcttgtcgcgctcaatcaaagtgaagcaacgcaattttttcaccaatcagccgg
gi|12 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttttcgaattttttccattcctatctgtatcgatattcttgttctcagatgaacaattcttcgtcttctgttccaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtCAATA----CTTT---CCCTGTTCGTGATGCTTTAAGTCTGGT-ATTTTGCTTTGATCC--------------------TTTTTTT----AAACCATTCATTCTTGATTTGA-ATTG--TTTTATTAC-TCTAGC-TATTTT-TGGAC--CTGACA-CCATCCA----TCGTTG---
gi|13 : agatgggtttcttaagcttttacttgttttaaaaatgtgtttttTTG--ACCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCT
gi|1 : ctagctgcatcattattaacaacttcgctcgttcccaagaaaggatcacttatatcctctaaactgaacagagattttactttgttttgaaaatgtgtgtgttaaatagCTGTTGGTGATGCCTTAA-CCTGGCGCCATTG-TTTGATCC-----------TTTTTATCTTTTTTTT----AA-TCA---ATTCTTGATTCGACATCTTGATTTATTACGCCTGAG-TATTTCGTGGACGCCTGACA----TCCAATAATCGTTG---CA-GGAGAGC-GTATTTTTTGT-TAGAGAC-AGATTCT-----AACCGAGTCTC--------T-----TTTGAT-AGTAGAGTCAATTG-TTT-GTTCAT--GGGTCTGATCTA-TTCA-----CAAGAGTAGCCTAATCAGCT-----G----AAATTCT-AC-TAGCAGATTT-TTCACAA-GATATTTTCCCAGA-TTACGTGAAAATGTTCTGG-TCATACTTCTGGCAATTTAT-------TT-GAGACCTAATCAGTATCGGCGTAACAATCTCAGTACAGTTTGGGGTATCAAGCA-CAAGCAAACGAA--------AAGTGAAATAC-GTTT-CTGTG-AATAATGAA-A-TTT-TTTCT--CTTTCAA-TGA-CTG-ATGAAACAGTGA-TAATACTA-ACGGG-CG-CCAGTTTTAAATATTGACG-CCAACTTTAAA--------------------TGTT-TACGCACAAA--------ATCTT---------AAAT-G--AAAAG-C------AGTATTTTAAGTAACC-----TAG-ATCAATTATGT-AGATAACACAA---ATTGCTTGAA--CCCT-A-TAGATTAAAAATAGTA-----------ATCGCATT------------GTCAAAACAACCAA-GGCAAAACATAATACA-TTATAAAT----G-C----CGGCATCTGAAAT---GGCACGGC-CAAT-AGC---TG-C-TT--GAAA--GATGGAGAGCAC-ATAAGACTTGAATTT--GACTAATTTC-GCGTATTTA-GAA--CTGT-TCAGATAGGACAGC-ACAGTATAGATTGCATTAATC-G-AGGGAATAATAA-TTATGTGGTTAAGGTGCTAGGCATTGGAAAAATAGATATTAGTGTC-T--ATATTAC--AAAGAAA-ATGGAGAAAGCAAATAGGTGGCCGAT---ATCG--ACGGCCA--
gi|16 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgtatttctagtatccattctagctgcatcattccttgttttctaagattgaccacatttcgctctgtatccaggaaagataacttatatcctctacaagtgaacagaggagtttacttgttttgaaatgtgtaattatagttacCCTTCTTTTTCTTTTTTTCCTTTTTTTTTTGGA--TCA---ATTCTTTATTCGT-ATTT--ATTTATTGT-CCTGAG-TATTTC-ttggttgaaaaatgagcggccatattgaattttgcgagtgggctcataagctaatattgatgtagtagacagcataaatgtgagccaacaacgaccaaagttttgtcgtcttgtcgcgctcaatcaaagtgaagcaacgcaattttttcaccaatcagccgg
gi|5 : TTGTTTTTTTTTTGTGTTTTTT----A--TCA---ATTCTTGATACGA-ATTT--ATTTATCCT-CGCAAG-TA-TTC-TGGAC--CCGTCACCCCTCCA----TCGTTG---CA-GCAGAGTAATATTCTCTGTCAGG---C-AGATTCT-----A---------CCATCTCCTT-----TTTACT-A----AGTCA-TTGCCTTTGTTCACCAGGGTCTGATCTAGTT-A-----CAAG--TA--ATA-TC-GCTGCTCGG----AGATTCT-ACTTATGAG-TTTCTTCACAACGAT-TTTTCC---A-TT---CTGAAAT-TTCTGGTTCAT-CTTTTGGTACATTACAGGTTAGTTTGAAACCTAAT---------------CATCT-AGTATAGT-TTGGTGATCAAGCATCAAACAAAT-AAGGAATAAGAAGTGAAATACA-TTT-TTGTA-CAAT-TGAACATATTGGCCTTC-TTTCCAATTGATCTGTATG-A-CAGTGATATCTACTA-AC-GG-CG-CCA-TTTTAAGAGATGACAGCCATATCTA-A--------------------T-TT-TAC-----AATGTCTTTTAACTCCTT------AATC-AT-AAGAG-CTTTCTAAGTAAGT------CCCACC---AG-GT-------------------------TT--TTGAA--CCAATA-GGCATTGAAAATAGTGATGCTTATATCAT-GC--T------------ATCAAA-CAAACAA-G-C-AAACATA-TACATT-----GT----ATC----C---AT-----GT---TCCACTACTGGC--GGC---CATT-TT--GAAAATG-TGGT--GC-C-ATA----TTGAATTT--TACTCATTTC-AATTA-TTA-GAGCTT--T-CCAAA-ATAAC--CACCA-TAT-------ATTAATCGG-AGGA----ATAT-TTT-------AAAGTGCTA-GCATTG--AAAATAG---TGA-TG-C-T--ATTTAACAAAA--ACA-ATGG---AAACATAT-----GCC-ATA--AT-C--GCGGCCA--
gi|7 : TCT-----T---------C--------T-----TTCACT-A----AGTCA-TTG-TTCTGCTCAT--GGATCTGATGTA-TT-A-----CATG--TA--CTA-TC-GCT-----G----AAAATCT-AC-CGTAAGATTTCTTCACAACGAT-TTTTTC---A-TT---CTGAAAC-TTCTGG-TCAT-CTTCCGGCATATTAT-------TTTGAAGCGTATT-CATATCG-TCTAAACAATT-AGTATAGTTTGGATGATCAAGCG-CAATAAAAT----GAATAAAAAGTGAAATACAATTT--TGTA-CAAT-TATA-A-ATT-GTCCT--ACTTCAA-TGTTCTG-ATGAA-CAGTGA-TAGTACTA-ACGGG-TG-CTC-TTTTAAGAGATGATGGCCATATT--GATTTTTTTTTTTTTTTTTTTTT-TT-TAC-----AA--------ATTTT---------GATT-AT-TAGAG-CTTTCTAA---------GTAAGCACCA-TAG-ATCAATTGTAT-A---------A---GT--------------------AGT-AAAATAGCG-----------AT-GC--T------------ATGATA-CAAACAA-G-CAAAACATA-------------T----A-C----C---AT-----AT---GAC-----------GAC---CATT-TT--GAAA--A-TGGT-GGC-C-ATA----TTGAATTC--Tttttgaaatggcggtctcatattgaattttgcgagtgggtccatatctaatattgattagtagcaaacctatccatccaccaaatttggtgttttcctcatcaagtgagcaattttttcaccaatcagccatgagatctattag
gi|11 : ttacatgtatctgtgaagtcgattttacca-CG-CCA-TCTTGAAA-ATGGCGGCCATATTGA-A--------------------T-TT-TAA-----AA--------Agagagttggtccatagctaacattgatcagtagacttagatataccaccacaccaaatcggtgctttcctcatcaagtgagcaatttttgtcaccaatcagccgaagta
gi|8 : aaaacaattgaaacaattttatcacttttcTTGAAAG-TGGCAGCCATATTGA-A--------------------T-TT-TAC-----TA--------ATTTC---------CAGTTATTAAGAAACTTTCAAAATA---------ACCACTA-TAGTATTAATCG-AG-A---------ATTTATT--TTGAAGTGCT----AGCATTGAAAATAGTT-----------TA-GCA-T------------ATT-TA-CAAACAG-A-TGGAACATA-TGCA-T-----GT-----------C---AT------------C---GC------GGC---CA-T-TT--TGAA--A-TGGG-GGC-CAATA-----TGAATTT--TGCgtgagtccttagctagtattgaagattatacatcaaataacctttgtggaaagtttcatgctttcctcatcaactgagcaattttattataaatttgcatcaatcagccgga
gi|10 : --------------------T-TC-TAC-----AA--------ATTTC---------ATAT-AT-TTGAG-TTCTCTGAATA----AC---ACCAACA-TA---TCAGTCGTGC-A---------A---ATT--TTGAA--TTTG-CTAGCAT-AAAAA-AGTG-----------AT-GC--T------------ATTTAA-CAAACAATG-GAAAACATA-TGC----------------C----A---AC-----AT---GGCGGgatgtgggtccatagataatattgattagtagaccttcaggctaaaagtaccaccacaccaagatttggtgtttcctcatcaagtgagcaattttttcacatcatcagccggat
gi|17 : catatgaat------------ACCAAC-CAA-CAA-A-CAAAACAAA-TACA-T-----GTCAAAA-C----C---AT-----TTTTTGGCGGGGA-GGG--GGCCATCA-T-TT--GAAatccatattgaattttgagggcgagtccaatagctaatatttgataaaggagaccttaactgtagccacacact
gi|4 : GAC-GGGCCGCC---CA-T-TTTTGAGA----TGA--GGC-C-ATA----TTTAATTTATTACAAATTGT-AATCA-TAA-GAGC-T--T-TTTAA-TTAAC--C-C-AGTAG-------AT-AATT-GTATA-----AAAT-TATTG-----AAACTA-TG-GCATT---AAAACAG---TGA-TG-C-TTCATGCAAA--AA--GCA--TAA---TAAC-TAT-----AC--AT---AT-G--GCAGCCA--
gi|11 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttttcgaattttttccattcctatctgtatcgatattcttgttctcagatgaacaattcttcgtcttctgttccaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaactttttgttcgtgtgcttaagctggtcttgccttttggatcttttttttattatcaattttgattcgatttatttattacctgttatcttggaacctgacccatcctcgttgggacgcaggtatttttctgtcaggcaagattctgaatcactattcctttactgaagttattgttttgaccatcgggtctgtcgattattcagcaagtatattgctaaaattctaactacgagatttcttcaaacgattttttcagttttgaatttggtcatcttctggcaattatttgagaacctaatcatagtgcgtaacaatctagtacgtttgggtgatcaagtaaaacaataagaggtagtgaatacagtttcctgtagcattggagattccttacttttcaatgatctgatacagtgattactgataGC---CA-TCTT--GAAA--A-TGGC-GGC-C-ATA----TTGAATTT--TAttttgaaaatggcagccatattgaattttact
gi|8 : aaaacaattgaaacaattttatcacttttcc-TT--GAAA--G-TGGC-AGC-C-ATA----TTGAATTT--TACTAATTTCCAGTTA-TTAAGAAACT--T-TCAAA-ATAAC--CACTATAGT-------ATTAATC-G-AGA-----ATTTATTTTG-----AA-GTGCTA-GCATTG--AAAATAG---TTT-AG-CAT--ATTT-AC--AA--ACAGATGG----AACATAT-----G-C-ATGTCAT-C--GCGGCCATTTTGAAATGGGGGCCAATATGAATTTTGCGATGTGGGTCCATAGATAATATTGATTAGTAGACCTTCAGGCTAAAAGTACCACCACACCAAGATTTGGTGTTTCCTCATCAAGTGA------GCAATTTTT-TCACATCATCAGCCGGAaaaagtgagtccttagctagtattgaagattatacatcaaataacctttgtggaaagtttcatgctttcctcatcaactgagcaattttattataaatttgcatcaatcagccgga
gi|10 : -C-ATA----T-GAATTTC-TACAAATTTC-ATATA-TTT-GAG--T--TCTCTGA-ATAAC--A-CCAACAT-------ATCAGTC-G-TGC-----AAAT-TTT-G-----AATTTGCTA-GCAT----AAAAAAG---TGA-TG-C-T--ATTTAAC--AA--ACA-ATGGA--AAACATAT-----GCCAAC---AT-G--GCGGt
gi|7 : TTT--TACAAATTTT-GATTA-TTA-GAGC-T--T-TCTAA-GTAAG--CACCAT-AG-------ATCAATT-G----------TAT-----------AAG----TA-GTA------AAATAG---CGA-TG-C-T--ATGATAC--AA--ACA-AGCA---AAACATAT-----ACC-AT---AT-G--------A--CGACCATTTTGAAAATGGTGGCCATATTGAATTCTGAGAGTTGGTCCATAGCTAACATTGATCAGTAGACTTAGATATACCACCACACCAAATCGGTGCTTTCCTCATCAAGTGA------GCAATTTTTGTCAC-CAATCAGCCGAAGTAatccatattgaattttgagggcgagtccaatagctaatatttgataaaggagaccttaactgtagccacacact
gi|5 : ttacatgtatctgtgaagtcgattttaccatcttctttcactaagtcattgttctgctcatggatctgatgtattacatgtactatcgctgaaaatctaccgtaagatttcttcacaacgattttttcattctgaaacttctggtcatcttccggcatattattttgaagcgtattcatatcgtctaaacaattagtatagtttggatgatcaagcgcaataaaatgaataaaaagtgaaatacaattttgtacaattataaattgtcctacttcaatgttctgatgaacagtgatagtactaacgggtgctcttttaagagatgatggccatattgattttttttttttttttttttAAGTGA------GCAATTTTT-TCAC-CAATCAGCC
gi|1 : ttgttttttttttgtgttttttatcaattcttgatacgaatttatttatcctcgcaagtattctggacccgtcacccctccatcgttgcagcagagtaatattctctgtcaggcagattctaccatctcctttttactaagtcattgcctttgttcaccagggtctgatctagttacaagtaatatcgctgctcggagattctacttatgagtttcttcacaacgatttttccattctgaaatttctggttcatcttttggtacattacaggttagtttgaaacctaatcatctagtatagtttggtgatcaagcatcaaacaaataaggaataagaagtgaaatacatttttgtacaattgaacatattggccttctttccaattgatctgtatgacagtgatatctactaacggcgccattttaagagatgacagccatatctaattttacaatgtcttttaactccttaatcataagagctttctaagtaagtcccaccaggtttttgaaccaataggcattgaaaatagtgatgcttatatcatgctatcaaacaaacaagcaaacatatacattgtatccatgttccactactggcggccattttgaaaatgtggtgccatattgaattttactcatttcaattattagagctttccaaaataaccaccatatattaatcggaggaatattttaaagtgctagcattgaaaatagtgatgctatttaacaaaaacaatggaaacatatgccataatcgcggccattttgaaatggcggtctcatattgaattttgcgagtgggtccatatctaatattgattagtagcaaacctatccatccaccaaatttggtgttttcctcatcAAGTGAAGCAACGCAATTTTT-TCAC-CAATCAGCCGGatgagatctattag
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): ATCTATAACAAATACATCAACTTTCGGAGCTGCTTGACTACTTTTCTCTAGCTGCACACCGGCAAGGCCGTAATGCCATATATTGTGATAGGAAAATGGATAAACTTGTTAATTAGCCATGTTTGACACCCCATAATATCACCATTTTGAACTTGGCATTAAACGTGTAACATTGACGAAATATCCATTGATTCGGTTTTAGGTTGTTGACGACTTAAACAAAAAGAGCTTGTTT
Unaligned ( gi|15 ): TACATCAAAGAACCTTTGGGAAGTTTTCCATGCTTTCCCTCACGCACTGAGCAATTTTGCTTAAAATTTTGGCACGCAATCAGCTGGACT
Alignments
lowQualScore : 1111 111 7777777777777 2222222 111 11 11 1 11111 111 22 11111 111 2222222222 111 111 55555555 3333333333333333 11 22 6666666666666666666666666666666666666666666666666666666 77777777777777777777777777777777777777777777777777 11 33333333333333333333333333333333 1111111111111111 7777777777777777777777777777 2222222 222222222222222 11111 11 1 2222222 33333 3333333 1111 1 11111111111111 1111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 11111 11111 222222222 1
lowQualScore : 8 7 1111 6 6 7 6 3 2 99 7 3 77 77 1 1 9999 2 111 4444444444444 2 3333333 000 0 00 77 33 0 5 77 99 6 3 2 3 3 333 0 99 6 66666 6 1 99 2 555 6 6 6 6 66 6 6 66666 99 111 6 6 3333333333 6 6 6 111 6 111 6 6 6 9 66666666 6 2222222222222222 6 6 9 5 3 1 00 2 99 666 99 99 6 6 6 3 6 33 6 6 888 1 3 6666666666666666666666666666666666666666666666666666666 6 6 11111111111111111111111111111111111111111111111111 00 3 6 1 7 66666666666666666666666666666666 5 5 0 1 77 77 3 5555555555555555 8888888888888888888888888888 6666666 4 8 5 5 999 4 9999 4 777777777777777 00000 5 77 4 5 3 33 00 5 4 1111111 6 22222 6 0000000 8 6 99 4444 1 6 6 3 99 99 6 99 5 99999999999999 4444 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 333 111 66666 6 66666 6 666666666 99 5
lowQualScore : . . .... . . . . . . .. . . .. .. . . .... . ... ............. . ....... ... . .. .. .. . . .. .. . . . . . ... . .. . ..... . . .. . ... . . . . .. . . ..... .. ... . . .......... . . . ... . ... . . . . ........ . ................ . . . . . . .. . .. ... .. .. . . . . . .. . . ... . . ....................................................... . . .................................................. .. . . . . ................................ . . . . .. .. . ................ ............................ ....... . . . . ... . .... . ............... ..... . .. . . . .. .. . . ....... . ..... . ....... . . .. .... . . . . .. .. . .. . .............. .... ................................................................................................................. ... ... ..... . ..... . ......... .. .
lowQualScore : 8 3 8888 7 7 3 7 7 5 22 5 0 99 99 0 0 3333 5 777 6666666666666 1 7777777 000 7 77 99 77 1 7 44 22 7 3 5 2 2 666 8 22 7 77777 7 0 22 5 555 7 7 7 7 22 7 7 77777 22 777 7 7 5555555555 7 7 7 777 7 777 7 7 7 3 88888888 7 2222222222222222 7 7 8 2 2 0 33 5 22 888 22 22 7 7 7 2 7 33 7 7 333 0 2 8888888888888888888888888888888888888888888888888888888 7 7 55555555555555555555555555555555555555555555555555 00 3 7 0 8 33333333333333333333333333333333 7 7 1 7 11 11 0 0000000000000000 6666666666666666666666666666 2222222 4 9 0 0 111 4 4444 4 888888888888888 00000 7 99 0 7 0 66 99 7 0 7777777 7 55555 7 5555555 5 7 22 2222 0 7 7 5 22 22 7 22 5 55555555555555 2222 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 000 777 77777 7 77777 7 777777777 22 0
consensus : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTT---GATCCCTTCTT-T--TTTTTTTTCTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTATA--T---TTTGA-AACCTAATC-ATATCG-CGTAACCATCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-ACTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------ATCTT---------AA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATTGTATA---------AA-TT--TTGAACCN-ATA-GCATTGAAAATAGTG-----------AT-GC--T------------ATCAAA-CAAACAAG-CAAAACATA-TACA-TGT----A-C----CA---TATGGCG----G----------GGC---GG----CCA-------T-TT-GAAA-ATG-GC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TA-TTAG--AGCTTT-CAAAATA--ACCAC-CA-TAT-------ATTAATC-GAGGG----ATAT-TTTTG-----AAGGTGCTA-GCATTG--AAAATAG----TGATG-C-TATTTAAC--AA--ACA-ATG--GAAAACATAT-----GCC-AT---AT-G--GCGGCCA--TTGGAATTGNGGAAANNGCGG--NCATATCGAATTTTGCGAGTGGG-TCATAATCTAATATTGAT-TAGTAGGC----------TNAAACCAACACCGCCCCAAGA-TTTGTCGTTTCCTCA---TCAA-----GTG-AGCAA-----TTTT-TT---------CAC--CAATCAGCCGGACTA
Reference ( family-1475 ) : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATNAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCNTTGCTTT---GATCCCTTCTTTT-CTTTTTTTTCTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGTNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATCAGGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTATAGGT---TTTGA-AACCTAATC-GTATCG-CGTAACCATCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGATTACTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------ATCTC---------AA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATCGTATA---------AA-TT--TTGAACCN-ANA-GCATTGAAAATAGTG-----------AT-GC--T------------ATCAAA-CAAACAAG-CAAAACATA-TACA-TGT----A-C----CA---TATGGCG----G----------GGC-GGGG----CCA-------T-TT-GAAA-ATG-GC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TA-TTAG--AGCTTT-CNAAATA--ACCAC-CANTAT-------ATTAATC-GAGG-----ATAT-TTTTG-----AAAGTGCTA-GCATTG--AAAATAG----TGATG-C-TATTTAAC--AA--ACA-ATG--GAAAACATAT-----GCC-AT---AT-G--GCGGCCA--CGGNNATNNNGGNNANNGTGG--NCNTNNCGANNTNNGNNCGTNGG-TNNNNNNNNNNCGTNGAC-CNNCAGGC----------TNAGANNNNCNNCNNNNCNAGA-TCGGNNNTTTCCTCA---TCAA-----GTG-AGCAA-----TTTT-TT---------CAC--CAATCAGCCGGAGTA
gi|1 : TATTTC-TAGTATCCATTC-TAGC-TGCATCAT--TCCTTGTTTTCTA--AGATTGACCACATT--TCG--CTCTGT
gi|1 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgCTTG-TTT-TG--AAATGTGTAATTATAGTTA--C-CTGTTGGTGATGCCTTAA-CCTGGCGCCATTG-TTT---GATCC-----------TTTTTATCTTTTTTTT----AA-TCA---ATTCTTGATTCGACATCTTGATTTATTACGCCTGAG-TATTTCGTGGACGCCTG-ACATCCAATAATCGTTGCAGGAGAGCG-TATTTTTTGTTAGAGACA-GATTCT-----AACCGAGTCTCTTTTGATAGT-AGAGTCAATTG-TTT-GTTCAT--GGGTCTGATCTA-TTCA-----CAAGAGTAGCCTAATCAGCT-----G----AAATTCTA-C-TAGCAGATTT-TTCACAA-GATATTTTCCCAGA-TTACGTGAAAATGTTCTGG-TCATACTTCTGGCA-ATT-TA------TTTGA-GACCTAATCAGTATCGGCGTAACAATCTCAGTACAGTTTGGGGTATCAAGCA-CAAGCAAACGAA--------AAGTGAAATAC-GTTTC-TGTG-AATAATGAA-A-TTT-TTTCT--CTTT-CAA-TGA-CTG-ATGAAACAGTGAT-AATACTA-ACGGGC-GCC-AGTTTTAAATATTGACG-CCAACTTTAAATG-------------------T-TTACGCACAAA--------ATCTT---------AAATGAAAAGCAGTATTTTAAGTA-------------ACC--TAGATCAATTATGTAGATAACACAAA-TTGCTTGAACCCTATA-G-ATTAAAAATAGTA-----------ATCGCATT------------GTCAAAACAACCAAGGCAAAACATAATACA-T-T----A-T----AA----ATGCCG----GCATCTGAAATGGC-ACGG----CCAATAGCTGC-TT-GAAAGATG-GA-GAGCACATAAGACTTGAATTT-G---------------ACTAATTTCGC-G-TATTTAG--AACTGT-TCAGATAGGACAGCACAGTATAGATTGCATTAATC-GAGGGAATAATAA-TTATGTGGTTAAGGTGCTAGGCATTGGAAAAATAGATATTAGTGTC-TATATTAC--AAAGAAA-ATGGAGAAAGCAAATAGGTGGCCGAT---ATCG--ACGGCCA--TTGG--TTGAAAAATGAGCGG--CCATATTGAATTTTGCGAGTGGGCTCATAAGCTAATATTGATGTAGTAGACAGCATAAATGTGAG-CCAACAACGACCAAAGT-TTTGTCGTCTTGTCGCGCTCAATCAAAGTGAAGCAACGCAATTTT-TT---------CAC--CAATCAGCCGGatccaggaaagataacttatatcctctacaagtgaacagaggagtttacttgttttgaaatgtgtaattatagttacctgttggtgatgccttaacctggcgccattgtttgatcctttttatcttttttttaatcaattcttgattcgacatcttgatttattacgcctgagtatttcgtggacgcctgacatccaataatcgttgcaggagagcgtattttttgttagagacagattctaaccgagtctcttttgatagtagagtcaattgtttgttcatgggtctgatctattcacaagagtagcctaatcagctgaaattctactagcagatttttcacaagatattttcccagattacgtgaaaatgttctggtcatacttctggcaatttatttgagacctaatcagtatcggcgtaacaatctcagtacagtttggggtatcaagcacaagcaaacgaaaagtgaaatacgtttctgtgaataatgaaattttttctctttcaatgactgatgaaacagtgataatactaacgggcgccagttttaaatattgacgccaactttaaatgtttacgcacaaaatcttaaatgaaaagcagtattttaagtaacctagatcaattatgtagataacacaaattgcttgaaccctatagattaaaaatagtaatcgcattgtcaaaacaaccaaggcaaaacataatacattataaatgccggcatctgaaatggcacggccaatagctgcttgaaagatggagagcacataagacttgaatttgactaatttcgcgtatttagaactgttcagataggacagcacagtatagattgcattaatcgagggaataataattatgtggttaaggtgctaggcattggaaaaatagatattagtgtctatattacaaagaaaatggagaaagcaaataggtggccgatatcgacggccattggttgaaaaatgagcggccatattgaattttgcgagtgggctcataagctaatattgatgtagtagacagcataaatgtgagccaacaacgaccaaagttttgtcgtcttgtcgcgctcaatcaaagtgaagcaacgcaattttttcaccaatcagccgg
gi|10 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgtatttctagtatccattctagctgcatcattccttgttttctaagattgaccacatttcgctctgtatccaggaaagataacttatatcctctacaagtgaacagaggagttta-CATA----T-GAATTTCT---------------ACAAATTTC-A-TATA-TTTG--AGTTCT-CTGAATA--AC-AC-CAACAT-------ATCAGTC-GTGC-----AAAT-TTT-G-----AATTTGCTA-GCAT----AAAAAAG----TGATG-C-TATTTAAC--AA--ACA-ATG--GAAAACATAT-----GCCAAC---AT-G--GCGG
gi|11 : G----CCA-------TCTT-GAAA-ATG-GC-G-GC-CATA----TTGAATTT-T---------------Aatccatattgaattttgagggcgagtccaatagctaatatttgataaaggagaccttaactgtagccacacact
gi|11 : aaaacaattgaaacaattttatcacttttccTTTCCTCA---TCAA-----CTG-AGCAA-----TTTTATTATAAATTTGCAT--CAATCAGCCGGAaaaagtgagtccttagctagtattgaagattatacatcaaataacctttgtggaaagtttcatgctttcctcatcaactgagcaattttattataaatttgcatcaatcagccgga
gi|12 : aaaacaattgaaacaattttatcacttttccgccatcttgaaaatggcggccatattgaattttaaaaagtgagtccttagctagtattgaagattatacatcaaataacctttgtggaaagtttcatgcCAATACT--TT---CCCTGTTCGTGATGCTTTAAGTCTGGT-ATTTTGCTTT---GATCC--------------------TTTTTTT----AAACCATTCATTCTTGATTTGA-ATTG--TTTTATTAC-TCTAGC-TATTTT-TGGAC--CTG-ACA-CCATCCATCGTTG
gi|13 : agatgggtttcttaagcttttacttgttttaaaaatgtgtttttCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTT---GATCCCTTCT
gi|14 : ctagctgcatcattattaacaacttcgctcgttcccaagaaaggatcacttatatcctctaaactgaacagagattttactttgttttgaaaatgtgtgtgttaaatagttgacTTCGAATATCTT-T--TATCCATTC-TATC-TGTATCATTATTCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCT
gi|16 : aattacatgtactttcaatcagtctgttacaagctggtgaaattgctgttCCTTCTTTTTCTTTTTTTCCTTTTTTTTTTGGA--TCA---ATTCTTTATTCGT-ATTT--ATTTATTGT-CCTGAG-TATTTC-
gi|17 : AA-CCAACAAA-CAAAACAAA-TACA-TGTCAAAA-C----CATTTTTTGGCG----G----------GGA-GGGGGCCATCA-------T-TT-GAA
gi|2 : accTTCCAAAATCTT-C--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--GGATTAACAATTCT--TTG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGGTTT---GATCCCTTCTTTTTCTTTTCTTTCTTTTTTTT----A--TCA---ATTATTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ATA-CGATCCATCGTTGCAGCAGGGCCACATTCTCTGTCTGG--CA-GATTCT-----A-C----------TTT-TACT-A-AGTCA-TTG-TTTTGTTAAT--GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCGG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTAT-------TTTGA-AACCTAATA-ATATCG-CGTAACCATCT-AGTATAGTGTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACATT--TGAA-A-ATT-GCCTT--TTTT-CAA-TGATCTG-ATGAA-CAGTGA-AACTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAGAT--------------------T-ATAC-----AA--------ATCTC---------AA-GTATAAG-AGCTTTCTAAGTACATATGTAA--CCATCA-TAGATCAATTGTATA---------AA-TT--TTGAACCT-AAA-ACATTAAAAATAGTG-----------AT-GC--T------------ATCAAA-CAAGCAAG-CGAAACATA-TACA-TGT----A-C----CA---TATGGCG----G----------GGCGGGGG----CCA-------T-TT-GAAA-GTG-GC-A-GC-CATA----TTGAATTT-T---------------ACTAATTTCAG-T-TA-TTAG--AA-TTT-CAAAATA--ACC-C-CATTAT-------ATTAATC-GAGG-----ATAT-TTTTG-----AAGGTGCTA-GCATTG--AAAATAG----TTATG-C-TATTTAAC--AA--ACA-ATG--G-AAACATAT-----GCC-AT---AT-G--GCGGCCA--NNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN-NNNNNNNN----------NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNN---NNAA-----GTG-AGCAA-----TTTT-TT---------CAC--TAATCAGCCGGACTA
gi|3 : TTC-AAT-TCTTGC--TATCCATTC-TAGCCTGAATCAT-ATCCT-G-TCTATATAAGAT-AACAATT----TCG--CTCTGTTC-TGATGCCT--AACCTGGT-CAAT-GCTTT---GATCC-------------TCTTTCTTTTTTTT--------------TTCCTGGATCAA---------TTATTATATCTGAGATATTT--TCGAC--CTATACA-C------TTGT-GCA-CACA-TCACATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-CTTTGTTCACCAGGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----GCTCGAGATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTTTGGTACATTACAGGTAG-TTTGA-AACCTAATC---------------ATCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTT-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-ACTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACAGCCATATCTAAAT--------------------T-TTAC-----AA--------GTCTTTTAACTCTTAA-TCATAAG-AGCTTTCTAAGTA--------A--CCACCA-TG-------------------------TT--TTGAACCA-ATA-GCATTGAAAATAGTG-----------AT-GC--TTATAATCATGCTATCAAA-CAAACAAG-CAAA-CATA-TACA-TGT----A-CTTACCA---TATGGCG----G----------------------CCA-------T-TTTGAAA-ATG-GCTG-GC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TA-TTAG--AGCTTT-CAAAATA--ACCAC-CA-TAT-------ATTAATC-GAGGGA---ATAT-TTT-------AAAGTGCTA-GCATTG--AAAATAG----TGATG-C-TATTTAAC--AA--ACA-ATG--GAAAA------------C-AT---AT-GCCNNNNNNN--NNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN-NNNNNNNN----------NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNN---NNAA-----GTG-AGCAA-----TTTT-TT---------CAC--CAATCAGCCta
gi|4 : TTCGAAT---TT-T--T-TCCATTCCTATC-TGTATCGATATTCTTG-T-TCTC--AGATGAACAATTCT--TCGTCTTCTGTTCatgag
gi|4 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttTTTGTTCGTG-TGC-TTAAGC-TGGT-C--TTGCCTTTTGGATC-----------------TTTTTTTTATT----A--TCA---ATT-TTGATTCGA--TTT--ATTTATTA--CCTG-T-TATCTT-GGAAC--CTG-AC--CCATCC-TCGTTGGGACGCAGGTAT-TTTTCTGTCAGG--CAAGATTCTGAATCA-CTA--T-TCCTTT---ACTGA-AGTTA-TTG-TTTTGACCATC-GGGTCTG-TCGA-TT-ATTCAGCAAG--TA---TA-TT-GCT-----A----AAATTCTAAC-TACGAGATTTCTTCA-AACGAT-TTTTTC---AGTTTTG---AA----TTTGG-TCAT-CTTCTGGCA-ATTAT--------TTGAGAACCTAATC-ATAGTG-CGTAACAATCT-AGTAC-GTTTGGGTGATCAAGTA--AAACAA-TAAGAG-----GTAGTGAA-TACAGTTTCCTGTAGCAT--TGGA-G-ATT--CCTTACTTTT-CAA-TGATCTG-AT--A-CAGTGATTACTGATAGACGGGCCGCCCA-TTTTT-GAGATGA-GGCCATATTTAATT--------------------TATTAC-----AA--------ATTGT---------AA-TCATAAG-AGCTTTTTAA-T-------TAA--CC--CAGTAGAT-AATTGTATA---------AAATTA-TTGAAACT-ATG-GCATT-AAAACAGTG-----------AT-GC--T-------------TCATG-CAAA-AAG-CATAATA----AC--TAT----A-C-----A---TATGGCA----G----------------------CCA-------T-TTTGAAA-ATG-GC-A-GC-CATA----TTGAATTT-T---------------ACTcaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaactttttgttcgtgtgcttaagctggtcttgccttttggatcttttttttattatcaattttgattcgatttatttattacctgttatcttggaacctgacccatcctcgttgggacgcaggtatttttctgtcaggcaagattctgaatcactattcctttactgaagttattgttttgaccatcgggtctgtcgattattcagcaagtatattgctaaaattctaactacgagatttcttcaaacgattttttcagttttgaatttggtcatcttctggcaattatttgagaacctaatcatagtgcgtaacaatctagtacgtttgggtgatcaagtaaaacaataagaggtagtgaatacagtttcctgtagcattggagattccttacttttcaatgatctgatacagtgattactgatagacgggccgcccatttttgagatgaggccatatttaatttattacaaattgtaatcataagagctttttaattaacccagtagataattgtataaaattattgaaactatggcattaaaacagtgatgcttcatgcaaaaagcataataactatacatatggcagccattttgaaaatggcagccatattgaattttact
gi|5 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttttcgaattttttccattcctatctgtatcgatattcttgttctcagatgaacaattcttcgtcttctgttccaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaacttTTGT-TTTTTTTTTGTGTTTTTT----A--TCA---ATTCTTGATACGA-ATTT--ATTTATCCT-CGCAAG-TA-TTC-TGGAC--CCG-TCACCCCTCCATCGTTGCAGCAGAGTAATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTGCCTTTGTTCACCAGGGTCTGATCTAGTT-A-----CAAG--TA--ATA-TC-GCTGCTCGG----AGATTCTA-CTTATGAG-TTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGGTTCAT-CTTTTGGTACATTACAGGTTAGTTTGA-AACCTAAT---------------CATCT-AGTATAGTTT-GGTGATCAAGCATCAAACAAAT-AAGGAATAAGAAGTGAAATACA-TTTT-TGTACAAT--TGAACATATTGGCCTT--CTTTCCAATTGATCTGTATG-A-CAGTGATATCTACTA-AC-GGC-GCC-A-TTTTAAGAGATGACAGCCATATCT-AAT--------------------T-TTAC-----AATGTCTTTTAACTCCTT------AA-TCATAAG-AGCTTTCTAAGTA-------AGTCCCACC---AGGT----------------------TT--TTGAACCA-ATAGGCATTGAAAATAGTGATGCTTATATCAT-GC--T------------ATCAAA-CAAACAAG-C-AAACATA-TACATTGT----ATC----CA---TGTTCCACTACT----------GGC---GG----CCAT------T-TT-GAAA-ATGTGG-T-GC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TA-TTAG--AGCTTTCCAAAATA--ACCAC-CA-TAT-------ATTAATCGGAGGA----ATAT-TTT-------AAAGTGCTA-GCATTG--AAAATAG----TGATG-C-TATTTAACAAAA--ACA-ATG--G-AAACATAT-----GCC-ATA--AT-C--GCGGCC--------ATTTT-GAAATGGCGGTCTCATATTGAATTTTGCGAGTGGG-TCCATATCTAATATTGAT-TAGTAG-------------CAAACCTATCCATCCACCAAATTTGGTGTTTTCCTCA---TCAA-----GTG-AGCAA-----TTTT-TT---------CAC--CAATCAGCC
gi|6 : TTCCAATATCTT-T--TATCCATTC-TAGC-TGCATCAGTCTCTTatgagatctattag
gi|7 : atttttgaacaactacttgttcccttctacttgccaaaaagcttcccaatggcctgaaactttagaatctggtaaaacaatctttcttctcagaccctttcctcttctagatttttccaatgttttcaggctgtctgaaaaatacttgctccaaattataccaactcgtctgacactatcttcaaacgtcttaacacccccccccttttttttttgtcttcagcatgttgataaagacaacaccatcaatggcaaaagtatcaactttcggagcctcgcaacttaattaatattcagaaatattttgtagcaaaacaagacccgatttttattcatgccattaatcacaaaattgtcattgagattatggatatgcttagttgtcatgtttataaaaacgtcataagatcaccatttcgaacttgacgtgaaacatgtaactgagaaaagagagaagagctttgtttcaatgacgcaatctgttgtgttctaggttgttgacaactaaatacaacttgcttgttttgcttactgggttcgtatatagactttgaactactttcaatcagtctgctacaagctggtgaaattgctgttTCTGTGAAG--TC-GATTTT-----A-CCA--TCTTCTTTC--ACT-A-AGTCA-TTG-TTCTGCTCAT--GGATCTGATGTA-TT-A-----CATG--TA--CTA-TC-GCT-----G----AAAATCTA-C-CGTAAGATTTCTTCACAACGAT-TTTTTC---A-TTCTG---AAAC-TTCTGG-TCAT-CTTCCGGCATATTA----T---TTTGA-AGCGTATTC-ATATCG-TCTAAACAATT-AGTATAGTTTGGATGATCAAGCG-CAATAAAAT----GAATAAAAAGTGAAATACAATTT--TGTACAAT--TATA-A-ATT-GTCCT--ACTT-CAA-TGTTCTG-ATGAA-CAGTGA-TAGTACTA-ACGGGT-GCT-C-TTTTAAGAGATGATGGCCATATT--GATTTTTTTTTTTTTTTTTTTTTT-TTAC-----AA--------ATTTT---------GA-TTATTAG-AGCTTTCTAAG--------TAA--GCACCA-TAGATCAATTGTATA---------AG-T--------------A-GT----AAAATAGCG-----------AT-GC--T------------ATGATA-CAAACAAG-CAAAACATA--------T----A-C----CA---TATGAC----------------------GA----CCAT------T-TT-GAAA-ATG-GT-G-GC-CATA----TTGAATTC-TGAGAGTTGGTCCATAGCTAACATTGA-T-CA-GTAG--A-CTT----AGATAT-ACCAC-CAact
gi|8 : ttacatgta-TT-GAAA-GTG-GC-A-GC-CATA----TTGAATTT-T---------------ACTAATTTCCAGT-TA-TTAAGAAACTTT-CAAAATA--ACCAC-TATAGT-------ATTAATC-GAGA-----ATTTATTTTG-----AA-GTGCTA-GCATTG--AAAATAG----TTTAG-CATATTT-AC--AA--ACAGATG--G--AACATAT-----G-C-ATGTCAT-C--GCGGCCATTTTGAAATGGGGGCCAATATGA--ATTTTGCGATGTGGGTCCATAGA-TAATATTGATTAGTAGAC-CTTCAGGC----------TAAAAGTACCACCACACCAAGA-TTTGGTGTTTCCTCA---TCAA-----GTG-AGCAA-----TTTT-TT---------CACATC-ATCAGCCGGAcaccaaatcggtgctttcctcatcaagtgagcaatttttgtcaccaatcagccgaagta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATCTATAACAAATACATCAACTTTCGGAGCTGCTTGACTACTTTTCTCTAGCTGCACACCGGCAAGGCCGTAATGCCATATATTGTGATAGGAAAATGGATAAACTTGTTAATTAGCCATGTTTGACACCCCATAATATCACCATTTTGAACTTGGCATTAAACGTGTAACATTGACGAAATATCCATTGATTCGGTTTTAGGTTGTTGACGACTTAAACAAAAAGAGCTTGTTT
Unaligned ( gi|15 ): TACATCAAAGAACCTTTGGGAAGTTTTCCATGCTTTCCCTCACGCACTGAGCAATTTTGCTTAAAATTTTGGCACGCAATCAGCTGGACT
Alignments
lowQualScore : 1111 444444444444444444444 2222222 111 11 11111 22 11111 111 33333 111 111 444444444 22222222222222 11 11 66666666666666666666 11111 3333333333333333333333333 6666666666666666666666666666666666666666666666666 11 6666666666666666 8888888888888888888888888888888888888888888888888888888888 1 1 111 1111 333333333333333 11111 1 2222222 2222 3333333 1111 11111111111111111111 8888888888888888 1 22222222 66666666666666666666666666666666666 1111 111111 111111 222222222
lowQualScore : 8 7 1111 6 6 7 6 3 2 99 6 3 77 77 22 9999 2 111111111111111111111 3333333 000 0 77 77 33 0 5 77 99 6 6 888 3 3 99 0 99 6 66666 6 1 99 2 3 6 6 6 6 6 88 6 6 66666 99 111 6 6 00000 6 6 6 111 6 111 6 6 6 9 333333333 6 6 88888888888888 6 1 6 1 00 3 1 00 2 99 666 99 99 6 6 6 6 6 6 6 6 6 6 1 3 00000000000000000000 6 66666 3333333333333333333333333 6 6 2222222222222222222222222222222222222222222222222 00 77 7 6 7777777777777777 5 5 5 77 5 7777777777777777777777777777777777777777777777777777777777 1 0 5 444 5 0000 5 111111111111111 00000 5 77 4 5 5 5 5 77 1 5 1111111 6 3 0000 6 0000000 2 6 99 4444 1 6 6 77 5 77 5 999 77 66666666666666666666 4444444444444444 0 888 5 9 0 1 5 5 22222222 5 5 55555555555555555555555555555555555 2 55 0000 999999 6 6 999999 6 666666666 99
lowQualScore : . . .... . . . . . . .. . . .. .. .. .... . ..................... ....... ... . .. .. .. . . .. .. . . ... . . .. . .. . ..... . . .. . . . . . . . .. . . ..... .. ... . . ..... . . . ... . ... . . . . ......... . . .............. . . . . .. . . .. . .. ... .. .. . . . . . . . . . . . . .................... . ..... ......................... . . ................................................. .. .. . . ................ . . . .. . .......................................................... . . . ... . .... . ............... ..... . .. . . . . . .. . . ....... . . .... . ....... . . .. .... . . . .. . .. . ... .. .................... ................ . ... . . . . . . ........ . . ................................... . .. .... ...... . . ...... . ......... ..
lowQualScore : 8 3 8888 7 7 3 7 7 5 22 7 0 99 99 00 7777 5 000000000000000000000 7777777 000 7 44 99 77 1 7 44 22 7 7 222 2 2 66 8 22 7 77777 7 0 22 5 2 7 7 7 7 7 33 7 7 77777 22 777 7 7 88888 7 7 7 777 7 777 7 7 7 3 333333333 7 7 33333333333333 7 0 7 7 88 2 0 33 5 22 888 22 22 7 7 7 7 7 7 7 7 7 7 0 5 88888888888888888888 7 77777 3333333333333333333333333 7 7 8888888888888888888888888888888888888888888888888 00 77 8 7 7777777777777777 7 7 0 99 7 3333333333333333333333333333333333333333333333333333333333 4 0 7 000 0 6666 0 222222222222222 00000 7 99 0 7 7 7 7 99 4 7 7777777 7 7 8888 7 5555555 5 7 22 2222 0 7 7 99 7 99 0 333 99 66666666666666666666 1111111111111111 3 999 7 4 3 4 7 7 11111111 7 7 22222222222222222222222222222222222 0 00 0000 222222 7 7 222222 7 777777777 22
consensus : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCTTTTTCTTTT---T---CTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCA-TCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--C-AGATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTGT-TTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCTG-----AAATTCT-ACT-ATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGGT-CAT-CTTCTGGCACATTA-----TA-TTTGA-AACCTAATCA-TATCG-CGTAAC-ATCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTT-CTGTACAAT--TGAA-A-ATTG-CCTT--CTTTC-AAT-GATCTG-ATGAA-CAGTGA-TA-CTACTA-ACGGG-CG-CCA-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA---------AT--CTT---------AA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCATAGATCAATTGTAT-A---------AATT--TTGAACCN-ATAG-CATTGAAAATAGTGAT-GC--T------------ATCAAA-CAAACAAG-CAAAACA--TA-TACAT-----GT----A-C----C---A---T-----ATGGCGG----GGC----GG------CCA-TTT-GAAA-ATGGC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGGA----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-AT---AT-G--GCGGCCATT----TTGA--AAATGGCGG--CCA-TATTGAATTTTGCGA-GTGGG-T-C-ATAAN--CTAATA-TTGAT-TAGTAG--------GC-TCAAA------CCAN--CANCGCGCNAAGNTTCGNCG-TTTC------CTCA-TCAA-GTGA------GCAATTTT-TT---------CAC--CAATCAGCCGGACTA
Reference ( family-1475 ) : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCTTTTTTTTTT---T---CTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCA-TCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--C-AGATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTGT-TTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCTG-----AAATTCT-ACT-ATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGGT-CAT-CTTCTGGCACATTA-----TATTTTGA-AACCTAATCA-TATCG-CGTAACCATCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTT-CTGTACAAT--TGAA-A-ATTG-CCTT--CTTTC-AAT-GATCTG-ATGAA-CAGTGA-TA-CTACTA-ACGGG-CG-CCA-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA---------AT--CTT---------AA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCATAGATCAATTGTAT-A---------AATT--TTGAACCN-ATAG-CATTGAAAATAGTGAT-GC--T------------ATCAAA-CAAACAAG-CAAAACA--TA-TACAT-----GT----A-C----C---A---T-----ATGGCGG----GGC----GG------CCA-TTT-GAAA-ATGGC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGGA----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-AT---AT-G--GCGGCCATTGGAATTGNGGAAANNGCGG--NCA-TATCGAATTTTGCGA-GTGGG-T-C-ATAAT--CTAATA-TTGAT-TAGTAG--------GC-TNAAA------CCAA--CACCGCCCCAAGATTTGTCG-TTTC------CTCA-TCAA-GTGA------GCAATTTT-TT---------CAC--CAATCAGCCGGACTA
gi|1 : TATTTC-TAGTATCCATTC-TAGC-TGCATCAT--TCCTTGTTTTCTA--AGATTGACCACATT--TCG--CTCTGT
gi|1 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgCTTG-TTT-TG--AAATGTGTAATTATAGTTA--C-CTGTTGGTGATGCCTTAA-CCTGGCGCCATTG-TTTGATCC--------TTTTTA---T---CTTTTTTTT----AA-TCA---ATTCTTGATTCGACATCTTGATTTATTACGCCTGAG-TATTTCGTGGACGCCTG-ACATCCA-ATAATCGTTGCAGGAGAGCG-TATTTTTTGTTAGAGAC-AGATTCT-----AACCGAGTCTCTTTTGATAGT-AGAGTCAATTGT-TT-GTTCAT--GGGTCTGATCTA-TTCA-----CAAGAGTAGCCTAATCAGCTG-----AAATTCT-ACT-AGCAGATTT-TTCACAA-GATATTTTCCCAGA-TTACGTGAAAATGTTCTGGT-CATACTTCTGGCA-ATT------TATTT-GA-GACCTAATCAGTATCGGCGTAACAATCTCAGTACAGTTTGGGGTATCAAGCA-CAAGCAAACGAA--------AAGTGAAATAC-GTTT-CTGTG-AATAATGAA-A-TTTT-TTCT--CTTTC-AAT-GA-CTG-ATGAAACAGTGA-TA-ATACTA-ACGGG-CG-CCAGTTTTAAATATTGACG-CCAACTTTAAATG-------------------T-TTACGCACAAA---------AT--CTT---------AAATGAAAAGCAGTATTTTAAGTA-------------ACC-TAGATCAATTATGT-AGATAACACAAATTGCTTGAACCCTATAG--ATTAAAAATAGTAATCGCATT------------GTCAAAACAACCAAGGCAAAACA--TAATACATTATAAAT----G-C----CGGCA---TCTGAAATGGCAC----GGCCAATAG------CTG-CTT-GAAAGATGGA-GAGCACATAAGACTTGAATTT-G---------------ACTAATTTCGC-G-TATTTAG--AACTGTT-CAGATAGG-ACAGCACAG-TA-TAGATTGCATTAATC-GAGGGAATAATAA-TTATGTGGTTAAGGTGCTAGGCATTGGAAAAATAGATATTAGTGTC-TATATTAC--AAAGA-AAATGGAGAAAGCA--AATAGGTGGCCGAT---ATCG--ACGGCCATTGG--TTGAAAAATGAGCGG--CCA-TATTGAATTTTGCGA-GTGGGCT-C-ATAAG--CTAATA-TTGATGTAGTAGACA-----GC-ATAAATGTGAGCCAA--CAACGACCAAAGTTTTGTCG-TCTTGTCGCGCTCAATCAAAGTGAAGCAACGCAATTTT-TT---------CAC--CAATCAGCCGGatccaggaaagataacttatatcctctacaagtgaacagaggagtttacttgttttgaaatgtgtaattatagttacctgttggtgatgccttaacctggcgccattgtttgatcctttttatcttttttttaatcaattcttgattcgacatcttgatttattacgcctgagtatttcgtggacgcctgacatccaataatcgttgcaggagagcgtattttttgttagagacagattctaaccgagtctcttttgatagtagagtcaattgtttgttcatgggtctgatctattcacaagagtagcctaatcagctgaaattctactagcagatttttcacaagatattttcccagattacgtgaaaatgttctggtcatacttctggcaatttatttgagacctaatcagtatcggcgtaacaatctcagtacagtttggggtatcaagcacaagcaaacgaaaagtgaaatacgtttctgtgaataatgaaattttttctctttcaatgactgatgaaacagtgataatactaacgggcgccagttttaaatattgacgccaactttaaatgtttacgcacaaaatcttaaatgaaaagcagtattttaagtaacctagatcaattatgtagataacacaaattgcttgaaccctatagattaaaaatagtaatcgcattgtcaaaacaaccaaggcaaaacataatacattataaatgccggcatctgaaatggcacggccaatagctgcttgaaagatggagagcacataagacttgaatttgactaatttcgcgtatttagaactgttcagataggacagcacagtatagattgcattaatcgagggaataataattatgtggttaaggtgctaggcattggaaaaatagatattagtgtctatattacaaagaaaatggagaaagcaaataggtggccgatatcgacggccattggttgaaaaatgagcggccatattgaattttgcgagtgggctcataagctaatattgatgtagtagacagcataaatgtgagccaacaacgaccaaagttttgtcgtcttgtcgcgctcaatcaaagtgaagcaacgcaattttttcaccaatcagccgg
gi|10 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgtatttctagtatccattctagctgcatcattccttgttttctaagattgaccacatttcgctctgtatccaggaaagataacttatatcctctacaagtgaacagaggagttta-CATA----T-GAATTTCT---------------ACAAATTTC-A-TATATT-TG--AGTT-CT-CTGA-ATA-AC---ACCAACA-TA-------TCAGTC-GTGCAA-----AT-TTT-G-----AATTTGCTAG-CAT----AAAAAAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCCAAC---AT-G--GCGG--AT----------------------CCA-TATTGAATTTTGAGG-GCGAG-T-C--CAATAGCTAATATTTGAT-
gi|11 : --AAACA-A--TTGAAA---CAATTTT-----ATC-AC---TT-T--TCCGCCATC----TTGA--AAATGGCGG--CCA-TATTGAATTTTAAAAAGTGAG-T-C-CTTAG--CTAGTA-TTGAA-GATTAT--------ACATCAAA------TAAC--CTTTGTGGAAAGTTTCATGC-TTTC------CTCA-TCAA-CTGA------GCAATTTTATTATAAATTTGCAT--CAATCAGCCGGAaaaggagaccttaactgtagccacacact
gi|12 : aCAATACT--TT---CCCTGTTCGTGATGCTTTAAGTCTGGT-ATTTTGCTTTGATCC-----------------------TTTTTTT----AAACCATTCATTCTTGATTTGA-ATTG--TTTTATTAC-TCTAGC-TATTTT-TGGAC--CTG-ACA-CCA-TCCATCGTTG
gi|13 : agatgggtttcttaagcttttacttgttttaaaaatgtgtttttCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCT
gi|14 : ctagctgcatcattattaacaacttcgctcgttcccaagaaaggatcacttatatcctctaaactgaacagagattttactttgttttgaaaatgtgtgtgttaaatagttgacTTCGAATATCTT-T--TATCCATTC-TATC-TGTATCATTATTCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCT
gi|16 : aattacatgtactttcaatcagtctgttacaagctggtgaaattgctgttCCTTCTTTTTCTTTT---TTTCCTTTTTTTTTTGGA--TCA---ATTCTTTATTCGT-ATTT--ATTTATTGT-CCTGAG-TATTTC-
gi|17 : AA-CCAACAAA-CAAAACA--AA-TACAT-----GTCAAAA-C----C---ATTTT-----TTGGCGG----GGA----GGGGGCCATCA-TTT-GAA
gi|2 : accTTCCAAAATCTT-C--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--GGATTAACAATTCT--TTG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGGTTTGATCCCTTCTTTTTCTTTTCTTT---CTTTTTTTT----A--TCA---ATTATTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ATA-CGA-TCCATCGTTGCAGCAGGGCCACATTCTCTGTCTGG--C-AGATTCT-----A-C----------TTT-TACT-A-AGTCA-TTGT-TTTGTTAAT--GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCTG-----AAATTCT-ACT-ATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCGG---AAAT-TTCTGGT-CAT-CTTCTGGCACATTA-----T--TTTGA-AACCTAATAA-TATCG-CGTAACCATCT-AGTATAGTGTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTT-CTGTACATT--TGAA-A-ATTG-CCTT--TTTTC-AAT-GATCTG-ATGAA-CAGTGA-AA-CTACTA-ACGGG-CG-CCA-TTTTAAGAGATGACGGCCATATTTAGAT--------------------T-ATAC-----AA---------AT--CTC---------AA-GTATAAG-AGCTTTCTAAGTACATATGTAA--CCATCATAGATCAATTGTAT-A---------AATT--TTGAACCT-AAAA-CATTAAAAATAGTGAT-GC--T------------ATCAAA-CAAGCAAG-CGAAACA--TA-TACAT-----GT----A-C----C---A---T-----ATGGCGG----GGCGGG-GG------CCA-TTT-GAAA-GTGGC-A-GC-CATA----TTGAATTT-T---------------ACTAATTTCAG-T-TATT-AG--AA-T-TT-CAAA-ATA-AC--C-CCATTA-TA-------TTAATC-GA-GGA----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TTATG-C-TATTTAAC--AAACA-A--TGG-AAA--CA--TAT-----GCC-AT---AT-G--GCGGCCANNNNNNNNNNNNNNNNNNNNN--NNN-NNNNNNNNNNNNNNN-NNNNN-N-N-NNNNN--NNNNNN-NNNNN-NNNNNN--------NN-NNNNN------NNNN--NNNNNNNNNNNNNNNNNNNN-NNNN------NNNN-NNAA-GTGA------GCAATTTT-TT---------CAC--TAATCAGCCGGACTA
gi|3 : TTC-AAT-TCTTGC--TATCCATTC-TAGCCTGAATCAT-ATCCT-G-TCTATATAAGAT-AACAATT----TCG--CTCTGTTC-TGATGCCT--AACCTGGT-CAAT-GCTTTGATCC----------TCTT---T---CTTTTTTTT--------------TTCCTGGATCAA---------TTATTATATCTGAGATATTT--TCGAC--CTATACA-C-------TTGT-GCA-CACATC-ACATTCTCTGTCAGG--C-AGATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTGC-TTTGTTCACCAGGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCTGCTCG-AGATTCT-ACT-ATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGGT-CAT-CTTTTGGTACATTACAGG-TAGTTTGA-AACCTAATCA-T--------------CT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTT-TTGTACAAT--TGAA-A-ATTG-CCTT--CTTTC-AAT-GATCTG-ATGAA-CAGTGA-TA-CTACTA-ACGGG-CG-CCA-TTTTAAGAGATGACAGCCATATCTAAAT--------------------T-TTAC-----AA---------GT--CTTTTAACTCTTAA-TCATAAG-AGCTTTCTAAGTA--------A--CCACCATG-------------------------TT--TTGAACCA-ATAG-CATTGAAAATAGTGAT-GC--TTATAATCATGCTATCAAA-CAAACAAG-CAAA-CA--TA-TACAT-----GT----A-CTTACC---A---T-----ATGGCGG-------------------CCA-TTTTGAAA-ATGGCTG-GC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGGAA---TAT-TTT-------AAAGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA----------------C-AT---AT-GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN-NNNNNNNNNNNNNNN-NNNNN-N-N-NNNNN--NNNNNN-NNNNN-NNNNNN--------NN-NNNNN------NNNN--NNNNNNNNNNNNNNNNNNNN-NNNN------NNNN-NNAA-GTGA------GCAATTTT-TT---------CAC--CAATCAGCCta
gi|4 : TTCGAAT---TT-T--T-TCCATTCCTATC-TGTATCGATATTCTTG-T-TCTC--AGATGAACAATTCT--TCGTCTTCTGTTCatgag
gi|4 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttTTTGTTCGTG-TG-CTTAAG-CTGGT-C--TTGC-----------CTTTTGGATCT---T---TTTTTTATT----A--TCA---ATT-TTGATTCG--ATTT--ATTTATTA--CCTG-T-TATCTT-GGAAC--CTG-AC--CCA-TCC-TCGTTGGGACGCAGGTAT-TTTTCTGTCAGG--CAAGATTCTGAATCA-CTA--T-TCC--TT-TACTGA-AGTTA-TTGT-TTTGACCATC-GGGTCTG-TCGA-TT-ATTCAGCAAG--TA---TA-TT-GCTA-----AAATTCTAACT-ACGAGATTTCTTCA-AACGAT-TTTTTC---AGTTTTG---AA----TTTGGT-CAT-CTTCTGGCA-ATTA--------TTTGAGAACCTAATCA-TAGTG-CGTAACAATCT-AGTAC-GTTTGGGTGATCAAGTA--AAAC-AATAAGAG-----GTAGTG-AATACAGTTTCCTGTAGCAT--TGGA-G-ATT--CCTTACTTTTC-AAT-GATCTG-AT--A-CAGTGATTA-CTGATAGACGGGCCGCCCA-TTTT-TGAGATGA-GGCCATATTTAATT--------------------TATTAC-----AA---------AT--TGT---------AA-TCATAAG-AGCTTTTTAA-T-------TAA--CC-CAGTAGAT-AATTGTATAA---------AATTA-TTGAAACT-ATGG-CATT-AAAACAGTGAT-GC--T-------------TCATG-CAAA-AAG-CATAATAACTA-TACAT-----AT------------------------------------GGC----AG------CCATTTT-GAAA-ATGGC-A-GC-CATA----TTGAATTT-T---------------ACTcaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaactttttgttcgtgtgcttaagctggtcttgccttttggatcttttttttattatcaattttgattcgatttatttattacctgttatcttggaacctgacccatcctcgttgggacgcaggtatttttctgtcaggcaagattctgaatcactattcctttactgaagttattgttttgaccatcgggtctgtcgattattcagcaagtatattgctaaaattctaactacgagatttcttcaaacgattttttcagttttgaatttggtcatcttctggcaattatttgagaacctaatcatagtgcgtaacaatctagtacgtttgggtgatcaagtaaaacaataagaggtagtgaatacagtttcctgtagcattggagattccttacttttcaatgatctgatacagtgattactgatagacgggccgcccatttttgagatgaggccatatttaatttattacaaattgtaatcataagagctttttaattaacccagtagataattgtataaaattattgaaactatggcattaaaacagtgatgcttcatgcaaaaagcataataactatacatatggcagccattttgaaaatggcagccatattgaattttact
gi|5 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttttcgaattttttccattcctatctgtatcgatattcttgttctcagatgaacaattcttcgtcttctgttccaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaacttTTTTTTTTT---T---GTGTTTTTT----A--TCA---ATTCTTGATACGA-ATTT--ATTTATCCT-CGCAAG-TATT-C-TGGAC--CCG-TCA-CCCCTCCATCGTTGCAGCAGAGTAATATTCTCTGTCAGG--C-AGATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTGCCTTTGTTCACCAGGGTCTGATCTAGTT-A-----CAAG--TA--ATA-TC-GCTGCTCGGAGATTCT-ACTTATGAG-TTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGGTTCAT-CTTTTGGTACATTACAGGTTAGTTTGA-AACCTAATCA-T--------------CT-AGTATAGTTTGG-TGATCAAGCATCAAACAAATAA-GGAATAAGAAGTGAAATACA-TTT-TTGTACAAT--TGAACATATTGGCCTT--CTTTCCAATTGATCTGTATGA--CAGTGA-TATCTACTA-ACGG--CG-CCA-TTTTAAGAGATGACAGCCATATCTAA-T--------------------T-TTAC-----AATGTCTTTTAACTCCTT---------AA-TCATAAG-AGCTTTCTAAGTA-------AGTCCCACCA--GGT----------------------TT--TTGAACCA-ATAGGCATTGAAAATAGTGAT-GC--TTATATCATGCT-ATCAAA-CAAACAAG-CAAA-CA--TA-TACATT----GT----ATC----C---A---T-----GTTCCACTACTGGC----GG------CCA-TTTTGAAA-ATGTG-GTGC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TATT-AG--AGCT-TTCCAAA-ATA-AC--CACCA-TA-TA-------TTAATCGGAGGAA----TAT-TTT-------AAAGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAACAAAAACA-A--TGG-AAA--CA--TAT-----GCC-ATA--AT-C--GCGGCCATT----TT---GAAATGGCGGTCTCA-TATTGAATTTTGCGA-GTGGG-TCC-AT-AT--CTAATA-TTGAT-TAGTAG------------CAAA------CCTATCCATC-CACCAA-ATTTGGTGTTTTC------CTCA-TCAA-GTGA------GCAATTTT-TT---------CAC--CAATCAGCC
gi|6 : ttgTTCCAATATCTT-T--TATCCATTC-TAGC-TGCATCAGTCTCTTatgagatctattag
gi|7 : atttttgaacaactacttgttcccttctacttgccaaaaagcttcccaatggcctgaaactttagaatctggtaaaacaatctttcttctcagaccctttcctcttctagatttttccaatgttttcaggctgtctgaaaaatacttgctccaaattataccaactcgtctgacactatcttcaaacgtcttaacacccccccccttttttttttgtcttcagcatgttgataaagacaacaccatcaatggcaaaagtatcaactttcggagcctcgcaacttaattaatattcagaaatattttgtagcaaaacaagacccgatttttattcatgccattaatcacaaaattgtcattgagattatggatatgcttagttgtcatgtttataaaaacgtcataagatcaccatttcgaacttgacgtgaaacatgtaactgagaaaagagagaagagctttgtttcaatgacgcaatctgttgtgttctaggttgttgacaactaaatacaacttgcttgttttgcttactgggttcgtatatagactttgaactactttcaatcagtctgctacaagctggtgaaattgctgttTCTGTGAAG--T-CGATTTT-----A-CCA--TCTTCTTTC--ACT-A-AGTCA-TTGT-TCTGCTCAT--GGATCTGATGTA-TT-A-----CATG--TA--CTA-TC-GCTG-----AAAATCT-ACC-GTAAGATTTCTTCACAACGAT-TTTTTC---A-TTCTG---AAAC-TTCTGGT-CAT-CTTCCGGCATAT-------TATTTTGA-AGCGTATTCA-TATCG-TCTAAACAATT-AGTATAGTTTGGATGATCAAGCG-CAATAAAAT----GAATAAAAAGTGAAATACAATTT--TGTACAAT--TATA-A-ATTG-TCCT--ACTTC-AAT-GTTCTG-ATGAA-CAGTGA-TA-GTACTA-ACGGG-TG-CTC-TTTTAAGAGATGATGGCCATATT--GATTTTTTTTTTTTTTTTTTTTTT-TTAC-----AA---------AT--TTT---------GA-TTATTAG-AGCTTTCTAAG--------TAA--GCACCATAGATCAATTGTAT-A---------A--------------GTAG-T----AAAATAGCGAT-GC--T------------ATGATA-CAAACAAG-CAAAACA--TA------------T----A-C----C---A---T-----AT---------GAC----GA------CCATTTT-GAAA-ATGGT-G-GC-CATA----TTGAATTC-TGAGAGTTGGTCCATAGCTAACATTGA-T-CAGT-AG--A-CT-T----AG-ATATAC--CACCA-CA-act
gi|8 : ttacatgtaTT-GAAA-GTGGC-A-GC-CATA----TTGAATTT-T---------------ACTAATTTCCAGT-TATT-AAGAAACT-TT-CAAA-ATA-AC--CACTA-TAGTA-------TTAATC-GAGA-A----TTTATTTTG-----AAG-TGCTAG-CATTG--AAAATAG----TTTAG-CATATTTA-C--AAACAGA--TGGAA----CA--TAT-----GC--ATGTCAT-C--GCGGCCATT----TTG---AAATGGGGG--CCAATAT-GAATTTTGCGATGTGGG-T-CCATAG---ATAATA-TTGAT-TAGTAGACCTTCAGGC-TAAAA------GTAC--CACCACACCAAGATTTGGTG-TTTC------CTCA-TCAA-GTGA------GCAATTTT-TT---------CACATC-ATCAGCCGGAccaaatcggtgctttcctcatcaagtgagcaatttttgtcaccaatcagccgaagta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATCTATAACAAATACATCAACTTTCGGAGCTGCTTGACTACTTTTCTCTAGCTGCACACCGGCAAGGCCGTAATGCCATATATTGTGATAGGAAAATGGATAAACTTGTTAATTAGCCATGTTTGACACCCCATAATATCACCATTTTGAACTTGGCATTAAACGTGTAACATTGACGAAATATCCATTGATTCGGTTTTAGGTTGTTGACGACTTAAACAAAAAGAGCTTGTTT
Unaligned ( gi|15 ): TACATCAAAGAACCTTTGGGAAGTTTTCCATGCTTTCCCTCACGCACTGAGCAATTTTGCTTAAAATTTTGGCACGCAATCAGCTGGACT
Alignments
lowQualScore : 1111 4444444444444444444444444 2222222 111 11 11 1 11111 111 22 11111 111 2222222222 111 111 5555555 3333333333333 1 11 888888888888888888888888888888888888888888888888888 666666666666666666666666666666666666666666666666666 11 666666666666 888888888888888888888888888888888888888888888888888888888888 1 111 1111 333333333333333 11111 2222222 2222222 3333333 1111 111 11111 2222222222222 111 11111 6666666666666666666666666666 111111 111111 222222222
lowQualScore : 8 7 1111 6 6 7 6 3 2 99 6 3 77 77 1 1 9999 2 2222222222222222222222222 3333333 000 0 00 77 33 0 5 77 99 6 3 2 3 3 99 0 99 6 66666 6 1 99 2 555 6 6 6 6 88 6 6 66666 99 111 6 6 3333333333 6 6 6 111 6 111 6 6 6 9 1111111 6 2222222222222 6 3 6 6 9 5 3 1 00 2 99 666 99 99 6 6 6 3 6 6 6 6 6 888 1 3 000000000000000000000000000000000000000000000000000 6 6 666666666666666666666666666666666666666666666666666 00 6 1 7 555555555555 6 99 1 5 5 7 77 5 111111111111111111111111111111111111111111111111111111111111 7 5 5 5 111 5 0000 5 111111111111111 00000 5 77 4 5 5 5 5 77 666 5 1111111 6 3333333 6 0000000 2 6 99 4444 1 6 6 77 5 77 666 77 44444 8888888888888 000 0 77 4 66 66 0 77 5 0 5 0 5 5 5 66666 11 5 5 0000000000000000000000000000 1 888 1 1 3 777 999999 6 6 999999 6 666666666 99
lowQualScore : . . .... . . . . . . .. . . .. .. . . .... . ......................... ....... ... . .. .. .. . . .. .. . . . . . .. . .. . ..... . . .. . ... . . . . .. . . ..... .. ... . . .......... . . . ... . ... . . . . ....... . ............. . . . . . . . . .. . .. ... .. .. . . . . . . . . . ... . . ................................................... . . ................................................... .. . . . ............ . .. . . . . .. . ............................................................ . . . . ... . .... . ............... ..... . .. . . . . . .. ... . ....... . ....... . ....... . . .. .... . . . .. . .. ... .. ..... ............. ... . .. . .. .. . .. . . . . . . . ..... .. . . ............................ . ... . . . ... ...... . . ...... . ......... ..
lowQualScore : 8 3 8888 7 7 3 7 7 5 22 7 0 99 99 0 0 7777 5 1111111111111111111111111 7777777 000 7 77 99 77 1 7 44 22 7 3 5 2 2 66 8 22 7 77777 7 0 22 5 555 7 7 7 7 33 7 7 77777 22 777 7 7 5555555555 7 7 7 777 7 777 7 7 7 3 3333333 7 7777777777777 7 3 7 7 8 2 2 0 33 5 22 888 22 22 7 7 7 2 7 7 7 7 7 333 0 2 555555555555555555555555555555555555555555555555555 7 7 222222222222222222222222222222222222222222222222222 00 7 0 8 888888888888 7 22 7 7 7 1 99 7 777777777777777777777777777777777777777777777777777777777777 1 0 7 7 999 0 6666 0 222222222222222 00000 7 99 0 7 7 7 7 99 777 7 7777777 7 8888888 7 5555555 5 7 22 2222 0 7 7 99 7 99 333 99 33333 6666666666666 000 3 99 3 66 00 3 99 7 9 7 3 7 7 7 33333 33 7 7 0000000000000000000000000000 0 333 0 0 2 777 222222 7 7 222222 7 777777777 22
consensus : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCTTTT---TCTTTT---T---CTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTATA------TTTGA-AACCTAATCA-TATCG-CGT-AAC-A-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------A---------TCTTAA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATTGTATA---------AA-TT--TTGAACCN-ATA-GCATTGAAAATAGTG------------AT-GC--TATCAAA-CAAACAAG-CAAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGCG-----GGC----GG------CCATTTT-GAAA-ATG-GC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-T-A-TA-------TTAATC-GAGGG-A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-A-T---AT---NGC---GGCCATT--TTGAAAA-TG-GCGG--CCA-TATTGAATTTT-GCGA-GTGGG-T-C--ATAAGCTAATA-TTGAT-TAGTAG--------GC-TCAAA------CC-A-CCANCGCGCNAAGTTTCGTNNTTTC------CTC-ATC-AAGTGA------GCAATTTT-TT---------CAC--CAATCAGCCGGACTA
Reference ( family-1475 ) : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCTTTT---TCTTTT---T---CTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTATA------TTTGA-AACCTAATCA-TATCG-CGT-AAC-A-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------A---------TCTTAA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATTGTATA---------AA-TT--TTGAACCN-ATA-GCATTGAAAATAGTG------------AT-GC--TATCAAA-CAAACAAG-CAAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGCG----GGGC----GG------CCA-TTT-GAAA-ATG-GC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-T-A-TA-------TTAATC-GAGGG-A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-A-T---AT---GGC---GGCCATT--TTGAAAA-TG-GCGG--CCA-TATTGAATTTT-GCGA-GTGGG-T-C--ATAANCTAATA-TTGAT-TAGTAG--------GC-TCAAA------CC-A-NCANCGCGCNAAGNTTCGNCGTTTC------CTC-ATC-AAGTGA------GCAATTTT-TT---------CAC--CAATCAGCCGGACTA
gi|1 : TATTTC-TAGTATCCATTC-TAGC-TGCATCAT--TCCTTGTTTTCTA--AGATTGACCACATT--TCG--CTCTGT
gi|1 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgCTTG-TTT-TG--AAATGTGTAATTATAGTTA--C-CTGTTGGTGATGCCTTAA-CCTGGCGCCATTG-TTTGATCCTTT-----------TTA---T---CTTTTTTTT----AA-TCA---ATTCTTGATTCGACATCTTGATTTATTACGCCTGAG-TATTTCGTGGACGCCTG-ACATCCAATAATCGTTGCAGGAGAGCG-TATTTTTTGTTAGAGACA-GATTCT-----AACCGAGTCTCTTTTGATAGT-AGAGTCAATTG-TTT-GTTCAT--GGGTCTGATCTA-TTCA-----CAAGAGTAGCCTAATCAGCT-----G----AAATTCTA-C-TAGCAGATTT-TTCACAA-GATATTTTCCCAGA-TTACGTGAAAATGTTCTGG-TCATACTTCTGGCA-ATT-TA------TTTGA-GACCTAATCAGTATCGGCGT-AAC-AATCTCAGTACAGTTTGGGGTATCAAGCA-CAAGCAAACGAA--------AAGTGAAATAC-GTTTC-TGTG-AATAATGAA-A-TTT-TTTCT--CTTT-CAA-TGA-CTG-ATGAAACAGTGAT-A-ATACTA-ACGGGC-GCC-AGTTTTAAATATTGACG-CCAACTTTAAATG-------------------T-TTACGCACAAA--------A---------TCTTAAATGAAAAGCAGTATTTTAAGTA-------------ACC--TAGATCAATTATGTAGATAACACAAA-TTGCTTGAACCCTATA-G-ATTAAAAATAGTA------------ATCGCATTGTCAAAACAACCAAGGCAAAACA--TAATACA-TTATAAA----T----G-CCGGCA---TCTGAAATGGCA----CGGCCAATAG------CTG-CTT-GAAAGATG-GA-GAGCACATAAGACTTGAATTT-G---------------ACTAATTTCGC-G-TATTTAG--AACTGTT-CAGATAGG-ACAGCACAG-T-A-TAGATTGCATTAATC-GAGGG-AATAATAA-TTATGTGGTTAAGGTGCTAGGCATTGGAAAAATAGATATTAGTGTC-TATATTAC--AAAGA-AAATGGAGAAAGCA--AATAGGTGGCCGA-T---ATC--GAC---GGCCATTGGTTGAAAAATGAGCGG--CCA-TATTGAATTTT-GCGA-GTGGGCT-C--ATAAGCTAATA-TTGATGTAGTAGACA-----GC-ATAAATGTGAGCC-A-ACAACGACCAAAGTTTTGTCGTCTTGTCGCGCTCAATCAAAGTGAAGCAACGCAATTTT-TT---------CAC--CAATCAGCCGGatccaggaaagataacttatatcctctacaagtgaacagaggagtttacttgttttgaaatgtgtaattatagttacctgttggtgatgccttaacctggcgccattgtttgatcctttttatcttttttttaatcaattcttgattcgacatcttgatttattacgcctgagtatttcgtggacgcctgacatccaataatcgttgcaggagagcgtattttttgttagagacagattctaaccgagtctcttttgatagtagagtcaattgtttgttcatgggtctgatctattcacaagagtagcctaatcagctgaaattctactagcagatttttcacaagatattttcccagattacgtgaaaatgttctggtcatacttctggcaatttatttgagacctaatcagtatcggcgtaacaatctcagtacagtttggggtatcaagcacaagcaaacgaaaagtgaaatacgtttctgtgaataatgaaattttttctctttcaatgactgatgaaacagtgataatactaacgggcgccagttttaaatattgacgccaactttaaatgtttacgcacaaaatcttaaatgaaaagcagtattttaagtaacctagatcaattatgtagataacacaaattgcttgaaccctatagattaaaaatagtaatcgcattgtcaaaacaaccaaggcaaaacataatacattataaatgccggcatctgaaatggcacggccaatagctgcttgaaagatggagagcacataagacttgaatttgactaatttcgcgtatttagaactgttcagataggacagcacagtatagattgcattaatcgagggaataataattatgtggttaaggtgctaggcattggaaaaatagatattagtgtctatattacaaagaaaatggagaaagcaaataggtggccgatatcgacggccattggttgaaaaatgagcggccatattgaattttgcgagtgggctcataagctaatattgatgtagtagacagcataaatgtgagccaacaacgaccaaagttttgtcgtcttgtcgcgctcaatcaaagtgaagcaacgcaattttttcaccaatcagccgg
gi|10 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgtatttctagtatccattctagctgcatcattccttgttttctaagattgaccacatttcgctctgtatccaggaaagataacttatatcctctacaagtgaacagaggagttta-CATA----T-GAATTTCT---------------ACAAATTTC-A-TATATT-TG--AGTT-CT-CTGA-ATA-AC---ACCAAC-A-TA-------TCAGTC-GTGCA-A-----AT-TTT-G-----AATTTGCTAG-CAT----AAAAAAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-AAC---AT---GGC---GG-------------A-T--------CCA-TATTGAATTTT-GAGG-GCGAG-T-CCAAT-AGCTAATATTTGAT-
gi|11 : --AAACA-A--TTGAAA---CAATTTT-----ATC-A-C---TT---TTC---CGCCATC--TTGAAAA-TG-GCGG--CCA-TATTGAATTTTAAAAA-GTGAG-T-C--CTTAGCTAGTA-TTGAA-GATTAT--------ACATCAAA------TA-A-CCTTTGTGGAAAGTTTCATGCTTTC------CTC-ATC-AACTGA------GCAATTTTATTATAAATTTGCAT--CAATCAGCCGGAaaaggagaccttaactgtagccacacact
gi|12 : aCAATACT--TT---CCCTGTTCGTGATGCTTTAAGTCTGGT-ATTTTGCTTTGATCC--------------------------TTTTTTT----AAACCATTCATTCTTGATTTGA-ATTG--TTTTATTAC-TCTAGC-TATTTT-TGGAC--CTG-ACA-CCATCCATCGTTG
gi|13 : agatgggtttcttaagcttttacttgttttaaaaatgtgtttttCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCT
gi|14 : ctagctgcatcattattaacaacttcgctcgttcccaagaaaggatcacttatatcctctaaactgaacagagattttactttgttttgaaaatgtgtgtgttaaatagttgacTTCGAATATCTT-T--TATCCATTC-TATC-TGTATCATTATTCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCT
gi|16 : aattacatgtactttcaatcagtctgttacaagctggtgaaattgctgttCCTTCTTTT---TCTTTT---TTTCCTTTTTTTTTTGGA--TCA---ATTCTTTATTCGT-ATTT--ATTTATTGT-CCTGAG-TATTTC-
gi|17 : AA-CCAACAAA-CAAAACA--AA-TACA-T-----G----TCAAAA-CC---ATTTT-----TTGGCG----GGGA----GGGGGCCATCA-TTT-GAA
gi|2 : accTTCCAAAATCTT-C--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--GGATTAACAATTCT--TTG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGGTTTGATCCCTTCTTTT---TCTTTTCTTT---CTTTTTTTT----A--TCA---ATTATTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ATA-CGATCCATCGTTGCAGCAGGGCCACATTCTCTGTCTGG--CA-GATTCT-----A-C----------TTT-TACT-A-AGTCA-TTG-TTTTGTTAAT--GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCGG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTAT-------TTTGA-AACCTAATAA-TATCG-CGT-AACCA-TCT-AGTATAGTGTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACATT--TGAA-A-ATT-GCCTT--TTTT-CAA-TGATCTG-ATGAA-CAGTGAA-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAGAT--------------------T-ATAC-----AA--------A---------TCTCAA-GTATAAG-AGCTTTCTAAGTACATATGTAA--CCATCA-TAGATCAATTGTATA---------AA-TT--TTGAACCT-AAA-ACATTAAAAATAGTG------------AT-GC--TATCAAA-CAAGCAAG-CGAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGCG----GGGC----GGGGG---CCA-TTT-GAAA-GTG-GC-A-GC-CATA----TTGAATTT-T---------------ACTAATTTCAG-T-TATT-AG--AA-T-TT-CAAA-ATA-AC--C-CCA-TTA-TA-------TTAATC-GAGG--A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TTATG-C-TATTTAAC--AAACA-A--TGGAAA---CA--TAT-----GCC-A-T---ATGGCGGCCANNNNNNNN--NNNNNNN-NN-NNNN--NNN-NNNNNNNNNNN-NNNN-NNNNN-N-N--NNNNNNNNNNN-NNNNN-NNNNNN--------NN-NNNNN------NN-N-NNNNNNNNNNNNNNNNNNNNNNNNN------NNN-NNN-AAGTGA------GCAATTTT-TT---------CAC--TAATCAGCCGGACTA
gi|3 : TTC-AAT-TCTTGC--TATCCATTC-TAGCCTGAATCAT-ATCCT-G-TCTATATAAGAT-AACAATT----TCG--CTCTGTTC-TGATGCCT--AACCTGGT-CAAT-GCTTTGATCC-------------TCTT---T---CTTTTTTTT--------------TTCCTGGATCAA---------TTATTATATCTGAGATATTT--TCGAC--CTATACA-C------TTGT-GCA-CACATC-ACATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-CTTTGTTCACCAGGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----GCTCGAGATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTTTGGTACATTACAGGTAG-TTTGA-AACCTAAT---------------C-A-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTT-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACAGCCATATCTAAAT--------------------T-TTAC-----AA--------GTCTTTTAACTCTTAA-TCATAAG-AGCTTTCTAAG--------TAA--CCACCA-T------------------------G-TT--TTGAACCA-ATA-GCATTGAAAATAGTGATGCTTATAATCAT-GC--TATCAAA-CAAACAAG-C-AAACA--TA-TACA-T-----GTACTT----A-CC---A---T-----AT---------GGC----GG------CCATTTT-GAAA-ATG-GCTG-GC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-T-A-TA-------TTAATC-GAGGGAA----TAT-TTT-------AAAGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCCNN-N---NN---NNN---NNNNNNN--NNNNNNN-NN-NNNN--NNN-NNNNNNNNNNN-NNNN-NNNNN-N-N--NNNNNNNNNNN-NNNNN-NNNNNN--------NN-NNNNN------NN-N-NNNNNNNNNNNNNNNNNNNNNNNNN------NNN-NNN-AAGTGA------GCAATTTT-TT---------CAC--CAATCAGCCta
gi|4 : TTCGAAT---TT-T--T-TCCATTCCTATC-TGTATCGATATTCTTG-T-TCTC--AGATGAACAATTCT--TCGTCTTCTGTTCatgag
gi|4 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttTTTGTTCGTG-TGC-TTAAGC-TGGT-C--TTGC-----------CTTTTGGATCTTTT---T------TTTATT----A--TCA---ATT-TTGATTCGA--TTT--ATTTATTA--CCTG-T-TATCTT-GGAAC--CTG-AC--CCATCC-TCGTTGGGACGCAGGTAT-TTTTCTGTCAGG--CAAGATTCTGAATCA-CTA--T-TCCTTT---ACTGA-AGTTA-TTG-TTTTGACCATC-GGGTCTG-TCGA-TT-ATTCAGCAAG--TA---TA-TT-GCT-----A----AAATTCTAAC-TACGAGATTTCTTCA-AACGAT-TTTTTC---AGTTTTG---AA----TTTGG-TCAT-CTTCTGGCA-ATTAT--------TTGAGAACCTAATCA-TAGTG-CGT-AAC-AATCT-AGTAC-GTTTGGGTGATCAAGTA--AAACAA-TAAGAG-----GTAGTGAA-TACAGTTTCCTGTAGCAT--TGGA-G-ATT--CCTTACTTTT-CAA-TGATCTG-AT--A-CAGTGATTA-CTGATAGACGGGCCGCCCA-TTTTT-GAGATGA-GGCCATATTTAATT--------------------TATTAC-----AA--------A---------TTGTAA-TCATAAG-AGCTTTTTAA-T-------TAA--CC--CAGTAGAT-AATTGTATA---------AAATTA-TTGAAACT-ATG-GCATT-AAAACAGTG------------AT-GC--T-TCATG-CAAA-AAG-CATAATAACTA-TACA-T-----A----T--------------------------------GGC----AG------CCA-TTTTGAAA-ATG-GC-A-GC-CATA----TTGAATTT-T---------------ACTcaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaactttttgttcgtgtgcttaagctggtcttgccttttggatcttttttttattatcaattttgattcgatttatttattacctgttatcttggaacctgacccatcctcgttgggacgcaggtatttttctgtcaggcaagattctgaatcactattcctttactgaagttattgttttgaccatcgggtctgtcgattattcagcaagtatattgctaaaattctaactacgagatttcttcaaacgattttttcagttttgaatttggtcatcttctggcaattatttgagaacctaatcatagtgcgtaacaatctagtacgtttgggtgatcaagtaaaacaataagaggtagtgaatacagtttcctgtagcattggagattccttacttttcaatgatctgatacagtgattactgatagacgggccgcccatttttgagatgaggccatatttaatttattacaaattgtaatcataagagctttttaattaacccagtagataattgtataaaattattgaaactatggcattaaaacagtgatgcttcatgcaaaaagcataataactatacatatggcagccattttgaaaatggcagccatattgaattttact
gi|5 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttttcgaattttttccattcctatctgtatcgatattcttgttctcagatgaacaattcttcgtcttctgttccaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaacttTTT---TTTTTT---T---GTGTTTTTT----A--TCA---ATTCTTGATACGA-ATTT--ATTTATCCT-CGCAAG-TA-TTC-TGGAC--CCG-TCACCCCTCCATCGTTGCAGCAGAGTAATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTGCCTTTGTTCACCAGGGTCTGATCTAGTT-A-----CAAG--TA--ATA-TC-GCTGCTCGG----AGATTCTA-CTTATGAG-TTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGGTTCAT-CTTTTGGTACATTACAGGTTAGTTTGA-AACCTAAT---------------C-A-TCT-AGTATAGTTT-GGTGATCAAGCATCAAACAAAT-AAGGAATAAGAAGTGAAATACA-TTTT-TGTACAAT--TGAACATATTGGCCTT--CTTTCCAATTGATCTGTATG-A-CAGTGAT-ATCTACTA-AC-GGC-GCC-A-TTTTAAGAGATGACAGCCATATCT-AAT--------------------T-TTAC-----AATGTCTTTTAACT------CCTTAA-TCATAAG-AGCTTTCTAAGTA-------AGTCCCACC---AGGT----------------------TT--TTGAACCA-ATAGGCATTGAAAATAGTGATGCTTATATC-AT-GC--TATCAAA-CAAACAAG-C-AAACA--TA-TACATT-----G----T----ATCC---A---T-----GTTCCACTACTGGC----GG------CCATTTT-GAAA-ATGTGG-T-GC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TATT-AG--AGCT-TTCCAAA-ATA-AC--CACCA-T-A-TA-------TTAATCGGAGGA-A----TAT-TTT-------AAAGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAACAAAAACA-A--TGG-AAA--CA--TAT-----GCC-A-TA--AT---CGC---GGCCATT--TTG-AAA-TG-GCGGTCTCA-TATTGAATTTT-GCGA-GTGGG-TCC--AT-ATCTAATA-TTGAT-TAGTAG------------CAAA------CCTATCCATC-CACCAAATTTGGTGTTTTC------CTC-ATC-AAGTGA------GCAATTTT-TT---------CAC--CAATCAGCC
gi|6 : ttgTTCCAATATCTT-T--TATCCATTC-TAGC-TGCATCAGTCTCTTatgagatctattag
gi|7 : atttttgaacaactacttgttcccttctacttgccaaaaagcttcccaatggcctgaaactttagaatctggtaaaacaatctttcttctcagaccctttcctcttctagatttttccaatgttttcaggctgtctgaaaaatacttgctccaaattataccaactcgtctgacactatcttcaaacgtcttaacacccccccccttttttttttgtcttcagcatgttgataaagacaacaccatcaatggcaaaagtatcaactttcggagcctcgcaacttaattaatattcagaaatattttgtagcaaaacaagacccgatttttattcatgccattaatcacaaaattgtcattgagattatggatatgcttagttgtcatgtttataaaaacgtcataagatcaccatttcgaacttgacgtgaaacatgtaactgagaaaagagagaagagctttgtttcaatgacgcaatctgttgtgttctaggttgttgacaactaaatacaacttgcttgttttgcttactgggttcgtatatagactttgaactactttcaatcagtctgctacaagctggtgaaattgctgttTCTGTGAAG--TC-GATTTT-----A-CCA--TCTTCTTTC--ACT-A-AGTCA-TTG-TTCTGCTCAT--GGATCTGATGTA-TT-A-----CATG--TA--CTA-TC-GCT-----G----AAAATCTA-C-CGTAAGATTTCTTCACAACGAT-TTTTTC---A-TTCTG---AAAC-TTCTGG-TCAT-CTTCCGGCATATTAT-------TTTGA-AGCGTATTCA-TATCG-TCTAAAC-A-ATT-AGTATAGTTTGGATGATCAAGCG-CAATAAAAT----GAATAAAAAGTGAAATACAATTT--TGTACAAT--TATA-A-ATT-GTCCT--ACTT-CAA-TGTTCTG-ATGAA-CAGTGAT-A-GTACTA-ACGGGT-GCT-C-TTTTAAGAGATGATGGCCATATT--GATTTTTTTTTTTTTTTTTTTTTT-TTAC-----AA--------A---------TTTTGA-TTATTAG-AGCTTTCTAAG--------TAA--GCACCA-TAGATCAATTGTATA---------A---------------GTA-GT----AAAATAGCG------------AT-GC--TATGATA-CAAACAAG-CAAAACA--TA-----------------T----A-CC---A---T-----AT---------GAC----GA------CCATTTT-GAAA-ATG-GT-G-GC-CATA----TTGAATTC-TGAGAGTTGGTCCATAGCTAACATTGA-T-CAGT-AG--A-CT-T----AG-ATATAC--CACCA-C-A-act
gi|8 : ttacatgtaTT-GAAA-GTG-GC-A-GC-CATA----TTGAATTT-T---------------ACTAATTTCCAGT-TATT-AAGAAACT-TT-CAAA-ATA-AC--CACTA-T-AGTA-------TTAATC-GAGA--A----TTTATTTTG-----AAG-TGCTAG-CATTG--AAAATAG----TTTAG-CATATTTA-C--AAACAGA--TGGAA----CA--TAT-----GC--A-TGTCAT---CGC---GGCCATT--TTGAAA--TG-GGGG--CCAATAT-GAATTTT-GCGATGTGGG-T-CC-ATAGA-TAATA-TTGAT-TAGTAGACCTTCAGGC-TAAAA------GT-A-CCACCACACCAAGATTTGGTGTTTC------CTC-ATC-AAGTGA------GCAATTTT-TT---------CACATC-ATCAGCCGGAccaaatcggtgctttcctcatcaagtgagcaatttttgtcaccaatcagccgaagta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATCTATAACAAATACATCAACTTTCGGAGCTGCTTGACTACTTTTCTCTAGCTGCACACCGGCAAGGCCGTAATGCCATATATTGTGATAGGAAAATGGATAAACTTGTTAATTAGCCATGTTTGACACCCCATAATATCACCATTTTGAACTTGGCATTAAACGTGTAACATTGACGAAATATCCATTGATTCGGTTTTAGGTTGTTGACGACTTAAACAAAAAGAGCTTGTTT
Unaligned ( gi|15 ): TACATCAAAGAACCTTTGGGAAGTTTTCCATGCTTTCCCTCACGCACTGAGCAATTTTGCTTAAAATTTTGGCACGCAATCAGCTGGACT
Alignments
lowQualScore : 1111 4444444444444444444444444 2222222 111 11 11 1 11111 111 22 11111 111 2222222222 111 111 5555555 3333333333333333 1 11 888888888888888888888888888888888888888888888888888 666666666666666666666666666666666666666666666666666 11 666666666666 999999999999999999999999999999999999999999999 111 1111111111 111 1111 333333333333333 11111 1 2222222 1111111 3333333 1111 11111 22222222222 11 111111 666666666666666666666666666 111111 111 111111 444444444444444444444 11
lowQualScore : 8 7 1111 6 6 7 6 3 2 99 6 3 77 77 1 1 9999 2 2222222222222222222222222 3333333 000 0 00 77 33 0 5 77 99 6 3 2 3 3 99 0 99 6 66666 6 1 99 2 555 6 6 6 6 88 6 6 66666 99 111 6 6 3333333333 6 6 6 111 6 111 6 6 6 9 1111111 6 7777777777777777 3 6 6 9 5 3 1 00 2 99 666 99 99 6 6 6 3 6 6 6 6 6 888 1 3 000000000000000000000000000000000000000000000000000 6 6 666666666666666666666666666666666666666666666666666 00 6 1 7 555555555555 6 99 1 5 5 7 77 5 222222222222222222222222222222222222222222222 000 4444444444 5 5 111 5 0000 5 111111111111111 00000 5 77 4 5 5 5 5 77 1 5 1111111 6 5555555 6 0000000 2 6 99 4444 1 6 6 77 5 77 5 999 77 44444 44444444444 99 4 77 6 88 6 0 6 0 6 6 6 999999 6 6 888888888888888888888888888 1 999 1 333333 22 111 6 6 5 666666 333333333333333333333 33
lowQualScore : . . .... . . . . . . .. . . .. .. . . .... . ......................... ....... ... . .. .. .. . . .. .. . . . . . .. . .. . ..... . . .. . ... . . . . .. . . ..... .. ... . . .......... . . . ... . ... . . . . ....... . ................ . . . . . . . .. . .. ... .. .. . . . . . . . . . ... . . ................................................... . . ................................................... .. . . . ............ . .. . . . . .. . ............................................. ... .......... . . ... . .... . ............... ..... . .. . . . . . .. . . ....... . ....... . ....... . . .. .... . . . .. . .. . ... .. ..... ........... .. . .. . .. . . . . . . . ...... . . ........................... . ... . ...... .. ... . . . ...... ..................... ..
lowQualScore : 8 3 8888 7 7 3 7 7 5 22 7 0 99 99 0 0 7777 5 1111111111111111111111111 7777777 000 7 77 99 77 1 7 44 22 7 3 5 2 2 66 8 22 7 77777 7 0 22 5 555 7 7 7 7 33 7 7 77777 22 777 7 7 5555555555 7 7 7 777 7 777 7 7 7 3 3333333 7 3333333333333333 3 7 7 8 2 2 0 33 5 22 888 22 22 7 7 7 2 7 7 7 7 7 333 0 2 555555555555555555555555555555555555555555555555555 7 7 222222222222222222222222222222222222222222222222222 00 7 0 8 888888888888 7 22 7 7 7 1 99 7 666666666666666666666666666666666666666666666 000 9999999999 7 7 999 0 6666 0 222222222222222 00000 7 99 0 7 7 7 7 99 4 7 7777777 7 5555555 7 5555555 5 7 22 2222 0 7 7 99 7 99 0 333 99 33333 00000000000 22 8 55 7 33 7 8 7 2 7 7 7 333333 7 7 888888888888888888888888888 0 444 0 555555 00 777 7 7 7 444444 444444444444444444444 66
consensus : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCTTTT---TCTTTT---T---CTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTATA------TTTGA-AACCTAATCA-TATCG-CGT-AA-CA-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------A---------TCTTAA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATTGTATA---------AA-TT--TTGAACCN-ATA-GCATTGAAAATAGTG------------AT-GC--TATCAAA-CAAACAAG-CAAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGC------GGC---GGCCAT--T------TTGAAA-ATG-GC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGG-A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-AT---ATCG-CGGCCATT--TTGAAAA-TG-GCGG--CCA-TATTGAATTTT-GCGA-GTGGG-T-C--ATAAGCTAATA-TTGAT-TAGTAGAC------GC-TCAAA------CC-A-CCANCGCGCNAAGTT---T--CGTGCTTTC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCCGGACTA
Reference ( family-1475 ) : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCTTTT---TCTTTT---T---CTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTATA------TTTGA-AACCTAATCA-TATCG-CGT-AA-CA-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------A---------TCTTAA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATTGTATA---------AA-TT--TTGAACCN-ATA-GCATTGAAAATAGTG------------AT-GC--TATCAAA-CAAACAAG-CAAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGC-G----GGC---GGCCAT--T------TTGAAA-ATG-GC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGG-A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-AT---ATNG-CGGCCATT--TTGAAAA-TG-GCGG--CCA-TATTGAATTTT-GCGA-GTGGG-T-C--ATAAGCTAATA-TTGAT-TAGTAG--------GC-TCAAA------CC-A-CCANCGCGCNAAGTT---T--CGTNNTTTC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCCGGACTA
gi|1 : TATTTC-TAGTATCCATTC-TAGC-TGCATCAT--TCCTTGTTTTCTA--AGATTGACCACATT--TCG--CTCTGT
gi|1 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgCTTG-TTT-TG--AAATGTGTAATTATAGTTA--C-CTGTTGGTGATGCCTTAA-CCTGGCGCCATTG-TTTGATCCTTT-----------TTA---T---CTTTTTTTT----AA-TCA---ATTCTTGATTCGACATCTTGATTTATTACGCCTGAG-TATTTCGTGGACGCCTG-ACATCCAATAATCGTTGCAGGAGAGCG-TATTTTTTGTTAGAGACA-GATTCT-----AACCGAGTCTCTTTTGATAGT-AGAGTCAATTG-TTT-GTTCAT--GGGTCTGATCTA-TTCA-----CAAGAGTAGCCTAATCAGCT-----G----AAATTCTA-C-TAGCAGATTT-TTCACAA-GATATTTTCCCAGA-TTACGTGAAAATGTTCTGG-TCATACTTCTGGCA-ATT-TA------TTTGA-GACCTAATCAGTATCGGCGT-AA-CAATCTCAGTACAGTTTGGGGTATCAAGCA-CAAGCAAACGAA--------AAGTGAAATAC-GTTTC-TGTG-AATAATGAA-A-TTT-TTTCT--CTTT-CAA-TGA-CTG-ATGAAACAGTGAT-A-ATACTA-ACGGGC-GCC-AGTTTTAAATATTGACG-CCAACTTTAAATG-------------------T-TTACGCACAAA--------A---------TCTTAAATGAAAAGCAGTATTTTAAGTA-------------ACC--TAGATCAATTATGTAGATAACACAAA-TTGCTTGAACCCTATA-G-ATTAAAAATAGTA------------ATCGCATTGTCAAAACAACCAAGGCAAAACA--TAATACA-TTATAAA----T----G-CCGGCA---TCTGAAATGGC-A------C---GGCCAA--TAGCTGCTTGAAAGATG-GA-GAGCACATAAGACTTGAATTT-G---------------ACTAATTTCGC-G-TATTTAG--AACTGTT-CAGATAGG-ACAGCACAG-TA-TAGATTGCATTAATC-GAGGG-AATAATAA-TTATGTGGTTAAGGTGCTAGGCATTGGAAAAATAGATATTAGTGTC-TATATTAC--AAAGA-AAATGGAGAAAGCA--AATAGGTGGCCGAT---ATCGACGGCCATTGGTTGAAAAATGAGCGG--CCA-TATTGAATTTT-GCGA-GTGGGCT-C--ATAAGCTAATA-TTGATGTAGTAGACA-----GC-ATAAATGTGAGCC-A-ACAACGACCAAAGTTTTGT--CGTCTTGTCGCGC-TCAATCAAAGTGAAGCAACGCAATTTT----------TT---------CAC--CAATCAGCCGGatccaggaaagataacttatatcctctacaagtgaacagaggagtttacttgttttgaaatgtgtaattatagttacctgttggtgatgccttaacctggcgccattgtttgatcctttttatcttttttttaatcaattcttgattcgacatcttgatttattacgcctgagtatttcgtggacgcctgacatccaataatcgttgcaggagagcgtattttttgttagagacagattctaaccgagtctcttttgatagtagagtcaattgtttgttcatgggtctgatctattcacaagagtagcctaatcagctgaaattctactagcagatttttcacaagatattttcccagattacgtgaaaatgttctggtcatacttctggcaatttatttgagacctaatcagtatcggcgtaacaatctcagtacagtttggggtatcaagcacaagcaaacgaaaagtgaaatacgtttctgtgaataatgaaattttttctctttcaatgactgatgaaacagtgataatactaacgggcgccagttttaaatattgacgccaactttaaatgtttacgcacaaaatcttaaatgaaaagcagtattttaagtaacctagatcaattatgtagataacacaaattgcttgaaccctatagattaaaaatagtaatcgcattgtcaaaacaaccaaggcaaaacataatacattataaatgccggcatctgaaatggcacggccaatagctgcttgaaagatggagagcacataagacttgaatttgactaatttcgcgtatttagaactgttcagataggacagcacagtatagattgcattaatcgagggaataataattatgtggttaaggtgctaggcattggaaaaatagatattagtgtctatattacaaagaaaatggagaaagcaaataggtggccgatatcgacggccattggttgaaaaatgagcggccatattgaattttgcgagtgggctcataagctaatattgatgtagtagacagcataaatgtgagccaacaacgaccaaagttttgtcgtcttgtcgcgctcaatcaaagtgaagcaacgcaattttttcaccaatcagccgg
gi|10 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgtatttctagtatccattctagctgcatcattccttgttttctaagattgaccacatttcgctctgtatccaggaaagataacttatatcctctacaagtgaacagaggagttta-CATA----T-GAATTTCT---------------ACAAATTTC-A-TATATT-TG--AGTT-CT-CTGA-ATA-AC---ACCAACA-TA-------TCAGTC-GTGCA-A-----AT-TTT-G-----AATTTGCTAG-CAT----AAAAAAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-A-----------------------ACA-TG-GCGGATCCA-TATTGAATTTT-GAGG-GCGAG-T-CCAAT-AGCTAATATTTGAT-
gi|11 : --AAACA-A--TTGAAA---CAATTTT-----ATC-AC---TTTT-CCGCCATC--TTGAAAA-TG-GCGG--CCA-TATTGAATTTTAAAAA-GTGAG-T-C--CTTAGCTAGTA-TTGAA-GATTAT--------ACATCAAA------TA-A-CCTTTGTGGAAAGTT---T--CATGCTTTC---C-TC-ATC-AACTGA------GCAATTTTA---------TTATAAATTTGCAT--CAATCAGCCGGAaaaggagaccttaactgtagccacacact
gi|12 : aCAATACT--TT---CCCTGTTCGTGATGCTTTAAGTCTGGT-ATTTTGCTTTGATCC--------------------------TTTTTTT----AAACCATTCATTCTTGATTTGA-ATTG--TTTTATTAC-TCTAGC-TATTTT-TGGAC--CTG-ACA-CCATCCATCGTTG
gi|13 : agatgggtttcttaagcttttacttgttttaaaaatgtgtttttCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCT
gi|14 : ctagctgcatcattattaacaacttcgctcgttcccaagaaaggatcacttatatcctctaaactgaacagagattttactttgttttgaaaatgtgtgtgttaaatagttgacTTCGAATATCTT-T--TATCCATTC-TATC-TGTATCATTATTCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCT
gi|15 : aattacatgtactttcaatcagtctgttacaagctggtgaaattgctgttAAGTT---TTCCATGCTTTC---CCTC-ACG-CACTGA------GCAATTTTGCTTAAAATTTTGG-------CACG-CAATCAGCTGGACT
gi|16 : tacatcaaagaacctttgggCCTTCTTTT---TCTTTT---TTTCCTTTTTTTTTTGGA--TCA---ATTCTTTATTCGT-ATTT--ATTTATTGT-CCTGAG-TATTTC-
gi|17 : AA-CCAACAAA-CAAAACA--AA-TACA-T-----G----TCAAAA-CC---ATTTT-----TTGGC-GGGGAGGG---GGCCATCAT------TTGAA
gi|2 : accTTCCAAAATCTT-C--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--GGATTAACAATTCT--TTG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGGTTTGATCCCTTCTTTT---TCTTTTCTTT---CTTTTTTTT----A--TCA---ATTATTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ATA-CGATCCATCGTTGCAGCAGGGCCACATTCTCTGTCTGG--CA-GATTCT-----A-C----------TTT-TACT-A-AGTCA-TTG-TTTTGTTAAT--GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCGG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTAT-------TTTGA-AACCTAATAA-TATCG-CGT-AACCA-TCT-AGTATAGTGTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACATT--TGAA-A-ATT-GCCTT--TTTT-CAA-TGATCTG-ATGAA-CAGTGAA-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAGAT--------------------T-ATAC-----AA--------A---------TCTCAA-GTATAAG-AGCTTTCTAAGTACATATGTAA--CCATCA-TAGATCAATTGTATA---------AA-TT--TTGAACCT-AAA-ACATTAAAAATAGTG------------AT-GC--TATCAAA-CAAGCAAG-CGAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGCGG----GGCGGGGGCCA---T------TTGAAA-GTG-GC-A-GC-CATA----TTGAATTT-T---------------ACTAATTTCAG-T-TATT-AG--AA-T-TT-CAAA-ATA-AC--C-CCATTA-TA-------TTAATC-GA-GG-A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TTATG-C-TATTTAAC--AAACA-A--TGG-AAA--CA--TAT-----GCC-AT---ATGG-CGGCCA
gi|2 : -AAGTGA------GCAATTTT----------TT---------CAC--TAATCAGCCGGACTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtgagcaattttttcactaatcagccggactata
gi|3 : ttccaaaatcttctatccattctagctgcatcattatccttgtctctaggattaacaattctttgctctgttcgtgatgccttaagcctggtcctttggtttgatcccttctttttcttttctttcttttttttatcaattattgattcgaatttatttattatcctgagtatttctggacctgatacgatccatcgttgcagcagggccacattctctgtctggcagattctacttttactaagtcattgttttgttaatgggtctgatctattacaagtactatcgctgaaattctactatgagatttcttcacaacgatttttccattcggaaatttctggtcatcttctggcacattattttgaaacctaataatatcgcgtaaccatctagtatagtgtgggtgatcaagcacaaacaaataaaggaataagaagtgaaatacagtttctgtacatttgaaaattgccttttttcaatgatctgatgaacagtgaaactactaacgggcgccattttaagagatgacggccatatttagattatacaaatctcaagtataagagctttctaagtacatatgtaaccatcatagatcaattgtataaattttgaacctaaaacattaaaaatagtgatgctatcaaacaagcaagcgaaacatatacatgtaccatatggcggggcgggggccatttgaaagtggcagccatattgaattttactaatttcagttattagaatttcaaaataaccccattatattaatcgaggatatttttgaaggtgctagcattgaaaatagttatgctatttaacaaacaatggaaacatatgccatatggcggccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTC-AAT-TCTTGC--TATCCATTC-TAGCCTGAATCAT-ATCCT-G-TCTATATAAGAT-AACAATT----TCG--CTCTGTTC-TGATGCCT--AACCTGGT-CAAT-GCTTTGATCC-------------TCTT---T---CTTTTTTTT--------------TTCCTGGATCAA---------TTATTATATCTGAGATATTT--TCGAC--CTATACA-C------TTGT-GCA-CACATC-ACATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-CTTTGTTCACCAGGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----GCTCGAGATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTTTGGTACATTACAGGTAG-TTTGA-AACCTAAT----------------CA-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTT-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACAGCCATATCTAAAT--------------------T-TTAC-----AA--------GTCTTTTAACTCTTAA-TCATAAG-AGCTTTCTAAG--------TAA--CCACCA-T------------------------G-TT--TTGAACCA-ATA-GCATTGAAAATAGTGATGCTTATAATCAT-GC--TATCAAA-CAAACAAG-C-AAACA--TA-TACA-T-----GTACTT----A-CC---A---T-----AT---------GGC---GGCCAT--T------TTGAAA-ATG-GCTG-GC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGGAA----TAT-TTT-------AAAGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCCNNN---NNNN-NNNNNNNN--NNNNNNN-NN-NNNN--NNN-NNNNNNNNNNN-NNNN-NNNNN-N-N--NNNNNNNNNNN-NNNNN-NNNNNN--------NN-NNNNN------NN-N-NNNNNNNNNNNNNNN---N--NNNNNNNNN---N-NN-NNN-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCCta
gi|4 : TTCGAAT---TT-T--T-TCCATTCCTATC-TGTATCGATATTCTTG-T-TCTC--AGATGAACAATTCT--TCGTCTTCTGTTCatgag
gi|4 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttTTTGTTCGTG-TGC-TTAAGC-TGGT-C--TTGC-----------CTTTTGGATCTTTT---T------TTTATT----A--TCA---ATT-TTGATTCGA--TTT--ATTTATTA--CCTG-T-TATCTT-GGAAC--CTG-AC--CCATCC-TCGTTGGGACGCAGGTAT-TTTTCTGTCAGG--CAAGATTCTGAATCA-CTA--T-TCCTTT---ACTGA-AGTTA-TTG-TTTTGACCATC-GGGTCTG-TCGA-TT-ATTCAGCAAG--TA---TA-TT-GCT-----A----AAATTCTAAC-TACGAGATTTCTTCA-AACGAT-TTTTTC---AGTTTTG---AA----TTTGG-TCAT-CTTCTGGCA-ATTAT--------TTGAGAACCTAATCA-TAGTG-CGT-AA-CAATCT-AGTAC-GTTTGGGTGATCAAGTA--AAACAA-TAAGAG-----GTAGTGAA-TACAGTTTCCTGTAGCAT--TGGA-G-ATT--CCTTACTTTT-CAA-TGATCTG-AT--A-CAGTGATTA-CTGATAGACGGGCCGCCCA-TTTTT-GAGATGA-GGCCATATTTAATT--------------------TATTAC-----AA--------A---------TTGTAA-TCATAAG-AGCTTTTTAA-T-------TAA--CC--CAGTAGAT-AATTGTATA---------AAATTA-TTGAAACT-ATG-GCATT-AAAACAGTG------------AT-GC--T-TCATG-CAAA-AAG-CATAATAACTA-TACA-T-----A----T--------------------------------GGC---AGCCAT--T------TTGAAA-ATG-GC-A-GC-CATA----TTGAATTT-T---------------ACTcaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaactttttgttcgtgtgcttaagctggtcttgccttttggatcttttttttattatcaattttgattcgatttatttattacctgttatcttggaacctgacccatcctcgttgggacgcaggtatttttctgtcaggcaagattctgaatcactattcctttactgaagttattgttttgaccatcgggtctgtcgattattcagcaagtatattgctaaaattctaactacgagatttcttcaaacgattttttcagttttgaatttggtcatcttctggcaattatttgagaacctaatcatagtgcgtaacaatctagtacgtttgggtgatcaagtaaaacaataagaggtagtgaatacagtttcctgtagcattggagattccttacttttcaatgatctgatacagtgattactgatagacgggccgcccatttttgagatgaggccatatttaatttattacaaattgtaatcataagagctttttaattaacccagtagataattgtataaaattattgaaactatggcattaaaacagtgatgcttcatgcaaaaagcataataactatacatatggcagccattttgaaaatggcagccatattgaattttact
gi|5 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttttcgaattttttccattcctatctgtatcgatattcttgttctcagatgaacaattcttcgtcttctgttccaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaacttTTT---TTTTTT---T---GTGTTTTTT----A--TCA---ATTCTTGATACGA-ATTT--ATTTATCCT-CGCAAG-TA-TTC-TGGAC--CCG-TCACCCCTCCATCGTTGCAGCAGAGTAATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTGCCTTTGTTCACCAGGGTCTGATCTAGTT-A-----CAAG--TA--ATA-TC-GCTGCTCGG----AGATTCTA-CTTATGAG-TTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGGTTCAT-CTTTTGGTACATTACAGGTTAGTTTGA-AACCTAAT----------------CA-TCT-AGTATAGTTT-GGTGATCAAGCATCAAACAAAT-AAGGAATAAGAAGTGAAATACA-TTTT-TGTACAAT--TGAACATATTGGCCTT--CTTTCCAATTGATCTGTATG-A-CAGTGAT-ATCTACTA-AC-GGC-GCC-A-TTTTAAGAGATGACAGCCATATCT-AAT--------------------T-TTAC-----AATGTCTTTTAACT------CCTTAA-TCATAAG-AGCTTTCTAAGTA-------AGTCCCACC---AGGT----------------------TT--TTGAACCA-ATAGGCATTGAAAATAGTGATGCTTATATC-AT-GC--TATCAAA-CAAACAAG-C-AAACA--TA-TACATT-----G----T----ATCC---A---TGTTCCACTAC-T----GGC---GGCCAT--T------TTGAAA-ATGTGG-T-GC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TATT-AG--AGCT-TTCCAAA-ATA-AC--CACCA-TA-TA-------TTAATCGGAGGA-A----TAT-TTT-------AAAGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAACAAAAACA-A--TGG-AAA--CA--TAT-----GCC-ATA--ATCG-CGGCCATT--TTG-AAA-TG-GCGGTCTCA-TATTGAATTTT-GCGA-GTGGG-TCC--AT-ATCTAATA-TTGAT-TAGTAG------------CAAA------CCTATCCATC-CACCAAATT---T--GGTGTTTTC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCC
gi|6 : ttgTTCCAATATCTT-T--TATCCATTC-TAGC-TGCATCAGTCTCTTatgagatctattag
gi|7 : atttttgaacaactacttgttcccttctacttgccaaaaagcttcccaatggcctgaaactttagaatctggtaaaacaatctttcttctcagaccctttcctcttctagatttttccaatgttttcaggctgtctgaaaaatacttgctccaaattataccaactcgtctgacactatcttcaaacgtcttaacacccccccccttttttttttgtcttcagcatgttgataaagacaacaccatcaatggcaaaagtatcaactttcggagcctcgcaacttaattaatattcagaaatattttgtagcaaaacaagacccgatttttattcatgccattaatcacaaaattgtcattgagattatggatatgcttagttgtcatgtttataaaaacgtcataagatcaccatttcgaacttgacgtgaaacatgtaactgagaaaagagagaagagctttgtttcaatgacgcaatctgttgtgttctaggttgttgacaactaaatacaacttgcttgttttgcttactgggttcgtatatagactttgaactactttcaatcagtctgctacaagctggtgaaattgctgttTCTGTGAAG--TC-GATTTT-----A-CCA--TCTTCTTTC--ACT-A-AGTCA-TTG-TTCTGCTCAT--GGATCTGATGTA-TT-A-----CATG--TA--CTA-TC-GCT-----G----AAAATCTA-C-CGTAAGATTTCTTCACAACGAT-TTTTTC---A-TTCTG---AAAC-TTCTGG-TCAT-CTTCCGGCATATTAT-------TTTGA-AGCGTATTCA-TATCG-TCTAAA-CA-ATT-AGTATAGTTTGGATGATCAAGCG-CAATAAAAT----GAATAAAAAGTGAAATACAATTT--TGTACAAT--TATA-A-ATT-GTCCT--ACTT-CAA-TGTTCTG-ATGAA-CAGTGAT-A-GTACTA-ACGGGT-GCT-C-TTTTAAGAGATGATGGCCATATT--GATTTTTTTTTTTTTTTTTTTTTT-TTAC-----AA--------A---------TTTTGA-TTATTAG-AGCTTTCTAAG--------TAA--GCACCA-TAGATCAATTGTATA---------A---------------GTA-GT----AAAATAGCG------------AT-GC--TATGATA-CAAACAAG-CAAAACA--TA-----------------T----A-CC---A---T-----AT---------GAC---GACCAT--T------TTGAAA-ATG-GT-G-GC-CATA----TTGAATTC-TGAGAGTTGGTCCATAGCTAACATTGA-T-CAGT-AG--A-CT-T----AG-ATATAC--CACCA-CA-act
gi|8 : ttacatgta------TTGAAA-GTG-GC-A-GC-CATA----TTGAATTT-T---------------ACTAATTTCCAGT-TATT-AAGAAACT-TT-CAAA-ATA-AC--CACTA-TAGTA-------TTAATC-GAGA--A----TTTATTTTG-----AAG-TGCTAG-CATTG--AAAATAG----TTTAG-CATATTTA-C--AAACAGA--TGGAA----CA--TAT-----GC--ATGTCATCG-CGGCCATT--TTGAAA--TG-GGGG--CCAATAT-GAATTTT-GCGATGTGGG-T-CC-ATA-GATAATA-TTGAT-TAGTAGACCTTCAGGC-TAAAA------GT-A-CCACCACACCAAGAT---T--TGGTGTTTC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CACATC-ATCAGCCGGAccaaatcggtgctttcctcatcaagtgagcaatttttgtcaccaatcagccgaagta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATCTATAACAAATACATCAACTTTCGGAGCTGCTTGACTACTTTTCTCTAGCTGCACACCGGCAAGGCCGTAATGCCATATATTGTGATAGGAAAATGGATAAACTTGTTAATTAGCCATGTTTGACACCCCATAATATCACCATTTTGAACTTGGCATTAAACGTGTAACATTGACGAAATATCCATTGATTCGGTTTTAGGTTGTTGACGACTTAAACAAAAAGAGCTTGTTT
Alignments
lowQualScore : 1111 4444444444444444444444444 2222222 111 11 11 1 11111 111 22 11111 111 2222222222 111 111 5555555 3333333333333333 1 11 888888888888888888888888888888888888888888888888888 666666666666666666666666666666666666666666666666666 11 666666666666 999999999999999999999999999999999999999999999 111 1111111111 111 1111 333333333333333 11111 1 2222222 1111111 3333333 1111 11111 22222222222 11111111 11 111111 11 444444444444444444444444 111 111 111111 444444444444444444444 11
lowQualScore : 8 7 1111 6 6 7 6 3 2 99 6 3 77 77 1 1 9999 2 2222222222222222222222222 3333333 000 0 00 77 33 0 5 77 99 6 3 2 3 3 99 0 99 6 66666 6 1 99 2 555 6 6 6 6 88 6 6 66666 99 111 6 6 3333333333 6 6 6 111 6 111 6 6 6 9 1111111 6 7777777777777777 3 6 6 9 5 3 1 00 2 99 666 99 99 6 6 6 3 6 6 6 6 6 888 1 3 000000000000000000000000000000000000000000000000000 6 6 666666666666666666666666666666666666666666666666666 00 6 1 7 555555555555 6 99 1 5 5 7 77 5 333333333333333333333333333333333333333333333 000 4444444444 5 5 111 5 0000 5 111111111111111 00000 5 77 4 5 5 5 5 77 1 5 1111111 6 5555555 6 0000000 2 6 99 4444 1 6 6 77 5 77 5 999 77 44444 11111111111 66666666 4 66 5 55 5 0 5 0 5 5 5 777777 5 22 0 444444444444444444444444 1 888 1 5 000 5 88 5 000 5 5 5 666666 333333333333333333333 33
lowQualScore : . . .... . . . . . . .. . . .. .. . . .... . ......................... ....... ... . .. .. .. . . .. .. . . . . . .. . .. . ..... . . .. . ... . . . . .. . . ..... .. ... . . .......... . . . ... . ... . . . . ....... . ................ . . . . . . . .. . .. ... .. .. . . . . . . . . . ... . . ................................................... . . ................................................... .. . . . ............ . .. . . . . .. . ............................................. ... .......... . . ... . .... . ............... ..... . .. . . . . . .. . . ....... . ....... . ....... . . .. .... . . . .. . .. . ... .. ..... ........... ........ . .. . .. . . . . . . . ...... . .. . ........................ . ... . . ... . .. . ... . . . ...... ..................... ..
lowQualScore : 8 3 8888 7 7 3 7 7 5 22 7 0 99 99 0 0 7777 5 1111111111111111111111111 7777777 000 7 77 99 77 1 7 44 22 7 3 5 2 2 66 8 22 7 77777 7 0 22 5 555 7 7 7 7 33 7 7 77777 22 777 7 7 5555555555 7 7 7 777 7 777 7 7 7 3 3333333 7 3333333333333333 3 7 7 8 2 2 0 33 5 22 888 22 22 7 7 7 2 7 7 7 7 7 333 0 2 555555555555555555555555555555555555555555555555555 7 7 222222222222222222222222222222222222222222222222222 00 7 0 8 888888888888 7 22 7 7 7 1 99 7 777777777777777777777777777777777777777777777 000 9999999999 7 7 999 0 6666 0 222222222222222 00000 7 99 0 7 7 7 7 99 4 7 7777777 7 5555555 7 5555555 5 7 22 2222 0 7 7 99 7 99 0 333 99 33333 99999999999 77777777 3 66 7 77 7 9 7 3 7 7 7 111111 7 44 9 333333333333333333333333 0 333 0 7 444 7 33 7 000 7 7 7 444444 444444444444444444444 66
consensus : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCTTTT---TCTTTT---T---CTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTATA------TTTGA-AACCTAATCA-TATCG-CGT-AA-CA-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------A---------TCTTAA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATTGTATA---------AA-TT--TTGAACCN-ATA-GCATTGAAAATAGTG------------AT-GC--TATCAAA-CAAACAAG-CAAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGC------GGC---GGCCAT--T------TTGAAA-ATG-GC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGG-A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-AT---ATCG-CGGCCA----TT--TTGAAAA-TG-GCGG--CCA-TATTGAATTTT-GCGA-GTGGG-T-C--ATAAGCTAATA-TTGAT-TAGTAGAC------GCTCAAA------CC-A-CCANCGCGCNAAG-TTT--CGT-G-CTT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCCGGACTA
Reference ( family-1475 ) : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCTTTT---TCTTTT---T---CTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTATA------TTTGA-AACCTAATCA-TATCG-CGT-AA-CA-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------A---------TCTTAA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATTGTATA---------AA-TT--TTGAACCN-ATA-GCATTGAAAATAGTG------------AT-GC--TATCAAA-CAAACAAG-CAAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGC------GGC---GGCCAT--T------TTGAAA-ATG-GC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGG-A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-AT---ATCG-CGGCCA----TT--TTGAAAA-TG-GCGG--CCA-TATTGAATTTT-GCGA-GTGGG-T-C--ATAAGCTAATA-TTGAT-TAGTAGAC------GCTCAAA------CC-A-CCANCGCGCNAAG-TTT--CGT-G-CTT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCCGGACTA
gi|1 : TATTTC-TAGTATCCATTC-TAGC-TGCATCAT--TCCTTGTTTTCTA--AGATTGACCACATT--TCG--CTCTGT
gi|1 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgCTTG-TTT-TG--AAATGTGTAATTATAGTTA--C-CTGTTGGTGATGCCTTAA-CCTGGCGCCATTG-TTTGATCCTTT-----------TTA---T---CTTTTTTTT----AA-TCA---ATTCTTGATTCGACATCTTGATTTATTACGCCTGAG-TATTTCGTGGACGCCTG-ACATCCAATAATCGTTGCAGGAGAGCG-TATTTTTTGTTAGAGACA-GATTCT-----AACCGAGTCTCTTTTGATAGT-AGAGTCAATTG-TTT-GTTCAT--GGGTCTGATCTA-TTCA-----CAAGAGTAGCCTAATCAGCT-----G----AAATTCTA-C-TAGCAGATTT-TTCACAA-GATATTTTCCCAGA-TTACGTGAAAATGTTCTGG-TCATACTTCTGGCA-ATT-TA------TTTGA-GACCTAATCAGTATCGGCGT-AA-CAATCTCAGTACAGTTTGGGGTATCAAGCA-CAAGCAAACGAA--------AAGTGAAATAC-GTTTC-TGTG-AATAATGAA-A-TTT-TTTCT--CTTT-CAA-TGA-CTG-ATGAAACAGTGAT-A-ATACTA-ACGGGC-GCC-AGTTTTAAATATTGACG-CCAACTTTAAATG-------------------T-TTACGCACAAA--------A---------TCTTAAATGAAAAGCAGTATTTTAAGTA-------------ACC--TAGATCAATTATGTAGATAACACAAA-TTGCTTGAACCCTATA-G-ATTAAAAATAGTA------------ATCGCATTGTCAAAACAACCAAGGCAAAACA--TAATACA-TTATAAA----T----G-CCGGCA---TCTGAAATGGC------A-C---GGCCAA--TAGCTGCTTGAAAGATG-GA-GAGCACATAAGACTTGAATTT-G---------------ACTAATTTCGC-G-TATTTAG--AACTGTT-CAGATAGG-ACAGCACAG-TA-TAGATTGCATTAATC-GAGGG-AATAATAA-TTATGTGGTTAAGGTGCTAGGCATTGGAAAAATAGATATTAGTGTC-TATATTAC--AAAGA-AAATGGAGAAAGCA--AATAGGTGGCCGAT---ATCGACGGCCA----TTGGTTGAAAAATGAGCGG--CCA-TATTGAATTTT-GCGA-GTGGGCT-C--ATAAGCTAATA-TTGATGTAGTAGACA-----GCATAAATGTGAGCC-A-ACAACGACCAAAG-TTT--TGTCGTCTTGTCGCGC-TCAATCAAAGTGAAGCAACGCAATTTT----------TT---------CAC--CAATCAGCCGGatccaggaaagataacttatatcctctacaagtgaacagaggagtttacttgttttgaaatgtgtaattatagttacctgttggtgatgccttaacctggcgccattgtttgatcctttttatcttttttttaatcaattcttgattcgacatcttgatttattacgcctgagtatttcgtggacgcctgacatccaataatcgttgcaggagagcgtattttttgttagagacagattctaaccgagtctcttttgatagtagagtcaattgtttgttcatgggtctgatctattcacaagagtagcctaatcagctgaaattctactagcagatttttcacaagatattttcccagattacgtgaaaatgttctggtcatacttctggcaatttatttgagacctaatcagtatcggcgtaacaatctcagtacagtttggggtatcaagcacaagcaaacgaaaagtgaaatacgtttctgtgaataatgaaattttttctctttcaatgactgatgaaacagtgataatactaacgggcgccagttttaaatattgacgccaactttaaatgtttacgcacaaaatcttaaatgaaaagcagtattttaagtaacctagatcaattatgtagataacacaaattgcttgaaccctatagattaaaaatagtaatcgcattgtcaaaacaaccaaggcaaaacataatacattataaatgccggcatctgaaatggcacggccaatagctgcttgaaagatggagagcacataagacttgaatttgactaatttcgcgtatttagaactgttcagataggacagcacagtatagattgcattaatcgagggaataataattatgtggttaaggtgctaggcattggaaaaatagatattagtgtctatattacaaagaaaatggagaaagcaaataggtggccgatatcgacggccattggttgaaaaatgagcggccatattgaattttgcgagtgggctcataagctaatattgatgtagtagacagcataaatgtgagccaacaacgaccaaagttttgtcgtcttgtcgcgctcaatcaaagtgaagcaacgcaattttttcaccaatcagccgg
gi|10 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgtatttctagtatccattctagctgcatcattccttgttttctaagattgaccacatttcgctctgtatccaggaaagataacttatatcctctacaagtgaacagaggagttta-CATA----T-GAATTTCT---------------ACAAATTTC-A-TATATT-TG--AGTT-CT-CTGA-ATA-AC---ACCAACA-TA-------TCAGTC-GTGCA-A-----AT-TTT-G-----AATTTGCTAG-CAT----AAAAAAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-A---------------------------ACA-TG-GCGGATCCA-TATTGAATTTT-GAGG-GCGAG-T-CCAAT-AGCTAATATTTGATAAAGGAGAC-------CTTAA
gi|11 : --AAACA-A--TTGAAA---CAATTTT-----ATC-AC---TTTT-CCGCCA----TC--TTGAAAA-TG-GCGG--CCA-TATTGAATTTTAAAAA-GTGAG-T-C--CTTAGCTAGTA-TTGAA-GATTATAC------A-TCAAA------TA-A-CCTTTGTGGAAAG-TTT--CAT-G-CTT-TC---C-TC-ATC-AACTGA------GCAATTTTA---------TTATAAATTTGCAT--CAATCAGCCGGActgtagccacacact
gi|12 : aCAATACT--TT---CCCTGTTCGTGATGCTTTAAGTCTGGT-ATTTTGCTTTGATCC--------------------------TTTTTTT----AAACCATTCATTCTTGATTTGA-ATTG--TTTTATTAC-TCTAGC-TATTTT-TGGAC--CTG-ACA-CCATCCATCGTTG
gi|13 : agatgggtttcttaagcttttacttgttttaaaaatgtgtttttCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCT
gi|14 : ctagctgcatcattattaacaacttcgctcgttcccaagaaaggatcacttatatcctctaaactgaacagagattttactttgttttgaaaatgtgtgtgttaaatagttgacTTCGAATATCTT-T--TATCCATTC-TATC-TGTATCATTATTCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCT
gi|15 : aattacatgtactttcaatcagtctgttacaagctggtgaaattgctgttAAG-TTTTCCAT-G-CTT-TC---CCTC-ACG-CACTGA------GCAATTTTGCTTAAAATTTTGG-------CACG-CAATCAGCTGGACT
gi|16 : tacatcaaagaacctttgggCCTTCTTTT---TCTTTT---TTTCCTTTTTTTTTTGGA--TCA---ATTCTTTATTCGT-ATTT--ATTTATTGT-CCTGAG-TATTTC-
gi|17 : AA-CCAACAAA-CAAAACA--AA-TACA-T-----G----TCAAAA-CC---ATTTT-----TTGGCGGGGA-GGG---GGCCATCAT------TTGAA
gi|2 : accTTCCAAAATCTT-C--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--GGATTAACAATTCT--TTG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGGTTTGATCCCTTCTTTT---TCTTTTCTTT---CTTTTTTTT----A--TCA---ATTATTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ATA-CGATCCATCGTTGCAGCAGGGCCACATTCTCTGTCTGG--CA-GATTCT-----A-C----------TTT-TACT-A-AGTCA-TTG-TTTTGTTAAT--GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCGG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTAT-------TTTGA-AACCTAATAA-TATCG-CGT-AACCA-TCT-AGTATAGTGTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACATT--TGAA-A-ATT-GCCTT--TTTT-CAA-TGATCTG-ATGAA-CAGTGAA-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAGAT--------------------T-ATAC-----AA--------A---------TCTCAA-GTATAAG-AGCTTTCTAAGTACATATGTAA--CCATCA-TAGATCAATTGTATA---------AA-TT--TTGAACCT-AAA-ACATTAAAAATAGTG------------AT-GC--TATCAAA-CAAGCAAG-CGAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGCGG----GGCGGGGGCCA---T------TTGAAA-GTG-GC-A-GC-CATA----TTGAATTT-T---------------ACTAATTTCAG-T-TATT-AG--AA-T-TT-CAAA-ATA-AC--C-CCATTA-TA-------TTAATC-GA-GG-A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TTATG-C-TATTTAAC--AAACA-A--TGG-AAA--CA--TAT-----GCC-AT---ATGG-CGGCCANNNNNN--NNNNNNN-NN-NNNN--NNN-NNNNNNNNNNN-NNNN-NNNNN-N-N--NNNNNNNNNNN-NNNNN-NNNNNNNN------NNNNNNN------NN-N-NNNNNNNNNNNNN-NNN--NNN-N-NNN-NN---N-NN-NNN-AAGTGA------GCAATTTT----------TT---------CAC--TAATCAGCCGGACTA
gi|3 : TTC-AAT-TCTTGC--TATCCATTC-TAGCCTGAATCAT-ATCCT-G-TCTATATAAGAT-AACAATT----TCG--CTCTGTTC-TGATGCCT--AACCTGGT-CAAT-GCTTTGATCC-------------TCTT---T---CTTTTTTTT--------------TTCCTGGATCAA---------TTATTATATCTGAGATATTT--TCGAC--CTATACA-C------TTGT-GCA-CACATC-ACATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-CTTTGTTCACCAGGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----GCTCGAGATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTTTGGTACATTACAGGTAG-TTTGA-AACCTAAT----------------CA-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTT-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACAGCCATATCTAAAT--------------------T-TTAC-----AA--------GTCTTTTAACTCTTAA-TCATAAG-AGCTTTCTAAG--------TAA--CCACCA-T------------------------G-TT--TTGAACCA-ATA-GCATTGAAAATAGTGATGCTTATAATCAT-GC--TATCAAA-CAAACAAG-C-AAACA--TA-TACA-T-----GTACTT----A-CC---A---T-----AT---------GGC---GGCCAT--T------TTGAAA-ATG-GCTG-GC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGGAA----TAT-TTT-------AAAGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC--N---NNNN-NNNNNN----NN--NNNNNNN-NN-NNNN--NNN-NNNNNNNNNNN-NNNN-NNNNN-N-N--NNNNNNNNNNN-NNNNN-NNNNNNNN------NNNNNNN------NN-N-NNNNNNNNNNNNN-NNN--NNN-N-NNN-NN---N-NN-NNN-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCCta
gi|4 : TTCGAAT---TT-T--T-TCCATTCCTATC-TGTATCGATATTCTTG-T-TCTC--AGATGAACAATTCT--TCGTCTTCTGTTCatgag
gi|4 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttTTTGTTCGTG-TGC-TTAAGC-TGGT-C--TTGC-----------CTTTTGGATCTTTT---T------TTTATT----A--TCA---ATT-TTGATTCGA--TTT--ATTTATTA--CCTG-T-TATCTT-GGAAC--CTG-AC--CCATCC-TCGTTGGGACGCAGGTAT-TTTTCTGTCAGG--CAAGATTCTGAATCA-CTA--T-TCCTTT---ACTGA-AGTTA-TTG-TTTTGACCATC-GGGTCTG-TCGA-TT-ATTCAGCAAG--TA---TA-TT-GCT-----A----AAATTCTAAC-TACGAGATTTCTTCA-AACGAT-TTTTTC---AGTTTTG---AA----TTTGG-TCAT-CTTCTGGCA-ATTAT--------TTGAGAACCTAATCA-TAGTG-CGT-AA-CAATCT-AGTAC-GTTTGGGTGATCAAGTA--AAACAA-TAAGAG-----GTAGTGAA-TACAGTTTCCTGTAGCAT--TGGA-G-ATT--CCTTACTTTT-CAA-TGATCTG-AT--A-CAGTGATTA-CTGATAGACGGGCCGCCCA-TTTTT-GAGATGA-GGCCATATTTAATT--------------------TATTAC-----AA--------A---------TTGTAA-TCATAAG-AGCTTTTTAA-T-------TAA--CC--CAGTAGAT-AATTGTATA---------AAATTA-TTGAAACT-ATG-GCATT-AAAACAGTG------------AT-GC--T-TCATG-CAAA-AAG-CATAATAACTA-TACA-T-----A----T--------------------------------GGC---AGCCAT--T------TTGAAA-ATG-GC-A-GC-CATA----TTGAATTT-T---------------ACTcaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaactttttgttcgtgtgcttaagctggtcttgccttttggatcttttttttattatcaattttgattcgatttatttattacctgttatcttggaacctgacccatcctcgttgggacgcaggtatttttctgtcaggcaagattctgaatcactattcctttactgaagttattgttttgaccatcgggtctgtcgattattcagcaagtatattgctaaaattctaactacgagatttcttcaaacgattttttcagttttgaatttggtcatcttctggcaattatttgagaacctaatcatagtgcgtaacaatctagtacgtttgggtgatcaagtaaaacaataagaggtagtgaatacagtttcctgtagcattggagattccttacttttcaatgatctgatacagtgattactgatagacgggccgcccatttttgagatgaggccatatttaatttattacaaattgtaatcataagagctttttaattaacccagtagataattgtataaaattattgaaactatggcattaaaacagtgatgcttcatgcaaaaagcataataactatacatatggcagccattttgaaaatggcagccatattgaattttact
gi|5 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttttcgaattttttccattcctatctgtatcgatattcttgttctcagatgaacaattcttcgtcttctgttccaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaacttTTT---TTTTTT---T---GTGTTTTTT----A--TCA---ATTCTTGATACGA-ATTT--ATTTATCCT-CGCAAG-TA-TTC-TGGAC--CCG-TCACCCCTCCATCGTTGCAGCAGAGTAATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTGCCTTTGTTCACCAGGGTCTGATCTAGTT-A-----CAAG--TA--ATA-TC-GCTGCTCGG----AGATTCTA-CTTATGAG-TTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGGTTCAT-CTTTTGGTACATTACAGGTTAGTTTGA-AACCTAAT----------------CA-TCT-AGTATAGTTT-GGTGATCAAGCATCAAACAAAT-AAGGAATAAGAAGTGAAATACA-TTTT-TGTACAAT--TGAACATATTGGCCTT--CTTTCCAATTGATCTGTATG-A-CAGTGAT-ATCTACTA-AC-GGC-GCC-A-TTTTAAGAGATGACAGCCATATCT-AAT--------------------T-TTAC-----AATGTCTTTTAACT------CCTTAA-TCATAAG-AGCTTTCTAAGTA-------AGTCCCACC---AGGT----------------------TT--TTGAACCA-ATAGGCATTGAAAATAGTGATGCTTATATC-AT-GC--TATCAAA-CAAACAAG-C-AAACA--TA-TACATT-----G----T----ATCC---A---T-----GTTCCACTACTGGC---GGCCAT--T------TTGAAA-ATGTGG-T-GC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TATT-AG--AGCT-TTCCAAA-ATA-AC--CACCA-TA-TA-------TTAATCGGAGGA-A----TAT-TTT-------AAAGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAACAAAAACA-A--TGG-AAA--CA--TAT-----GCC-ATA--ATCG-CGGCCA----TT--TTG-AAA-TG-GCGGTCTCA-TATTGAATTTT-GCGA-GTGGG-TCC--AT-ATCTAATA-TTGAT-TAGTAG-----------CAAA------CCTATCCATC-CACCAAA-TTT--GGT-G-TTT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCC
gi|6 : ttgTTCCAATATCTT-T--TATCCATTC-TAGC-TGCATCAGTCTCTTatgagatctattag
gi|7 : atttttgaacaactacttgttcccttctacttgccaaaaagcttcccaatggcctgaaactttagaatctggtaaaacaatctttcttctcagaccctttcctcttctagatttttccaatgttttcaggctgtctgaaaaatacttgctccaaattataccaactcgtctgacactatcttcaaacgtcttaacacccccccccttttttttttgtcttcagcatgttgataaagacaacaccatcaatggcaaaagtatcaactttcggagcctcgcaacttaattaatattcagaaatattttgtagcaaaacaagacccgatttttattcatgccattaatcacaaaattgtcattgagattatggatatgcttagttgtcatgtttataaaaacgtcataagatcaccatttcgaacttgacgtgaaacatgtaactgagaaaagagagaagagctttgtttcaatgacgcaatctgttgtgttctaggttgttgacaactaaatacaacttgcttgttttgcttactgggttcgtatatagactttgaactactttcaatcagtctgctacaagctggtgaaattgctgttTCTGTGAAG--TC-GATTTT-----A-CCA--TCTTCTTTC--ACT-A-AGTCA-TTG-TTCTGCTCAT--GGATCTGATGTA-TT-A-----CATG--TA--CTA-TC-GCT-----G----AAAATCTA-C-CGTAAGATTTCTTCACAACGAT-TTTTTC---A-TTCTG---AAAC-TTCTGG-TCAT-CTTCCGGCATATTAT-------TTTGA-AGCGTATTCA-TATCG-TCTAAA-CA-ATT-AGTATAGTTTGGATGATCAAGCG-CAATAAAAT----GAATAAAAAGTGAAATACAATTT--TGTACAAT--TATA-A-ATT-GTCCT--ACTT-CAA-TGTTCTG-ATGAA-CAGTGAT-A-GTACTA-ACGGGT-GCT-C-TTTTAAGAGATGATGGCCATATT--GATTTTTTTTTTTTTTTTTTTTTT-TTAC-----AA--------A---------TTTTGA-TTATTAG-AGCTTTCTAAG--------TAA--GCACCA-TAGATCAATTGTATA---------A---------------GTA-GT----AAAATAGCG------------AT-GC--TATGATA-CAAACAAG-CAAAACA--TA-----------------T----A-CC---A---T-----AT---------GAC---GACCAT--T------TTGAAA-ATG-GT-G-GC-CATA----TTGAATTC-TGAGAGTTGGTCCATAGCTAACATTGA-T-CAGT-AG--A-CT-T----AG-ATATAC--CACCA-CA-act
gi|8 : ttacatgta------TTGAAA-GTG-GC-A-GC-CATA----TTGAATTT-T---------------ACTAATTTCCAGT-TATT-AAGAAACT-TT-CAAA-ATA-AC--CACTA-TAGTA-------TTAATC-GAGA--A----TTTATTTTG-----AAG-TGCTAG-CATTG--AAAATAG----TTTAG-CATATTTA-C--AAACAGA--TGGAA----CA--TAT-----GC--ATGTCATCG-CGGCCA----TT--TTGAAA--TG-GGGG--CCAATAT-GAATTTT-GCGATGTGGG-T-CC-ATA-GATAATA-TTGAT-TAGTAGACCTTCAGGCTAAAA------GT-A-CCACCACACCAAGATTT--GGT-G--TT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CACATC-ATCAGCCGGAccaaatcggtgctttcctcatcaagtgagcaatttttgtcaccaatcagccgaagta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATCTATAACAAATACATCAACTTTCGGAGCTGCTTGACTACTTTTCTCTAGCTGCACACCGGCAAGGCCGTAATGCCATATATTGTGATAGGAAAATGGATAAACTTGTTAATTAGCCATGTTTGACACCCCATAATATCACCATTTTGAACTTGGCATTAAACGTGTAACATTGACGAAATATCCATTGATTCGGTTTTAGGTTGTTGACGACTTAAACAAAAAGAGCTTGTTT
Alignments
lowQualScore : 1111 4444444444444444444444444 2222222 111 11 11 1 11111 111 22 11111 111 2222222222 111 111 5555555 3333333333333333 1 11 888888888888888888888888888888888888888888888888888 666666666666666666666666666666666666666666666666666 11 666666666666 999999999999999999999999999999999999999999999 111 1111111111 111 1111 333333333333333 11111 1 2222222 1111111 3333333 1111 11111 22222222222 11111111 11 111111 11 444444444444444444444444 111 111 111111 444444444444444444444 11
lowQualScore : 8 7 1111 6 6 7 6 3 2 99 6 3 77 77 1 1 9999 2 2222222222222222222222222 3333333 000 0 00 77 33 0 5 77 99 6 3 2 3 3 99 0 99 6 66666 6 1 99 2 555 6 6 6 6 88 6 6 66666 99 111 6 6 3333333333 6 6 6 111 6 111 6 6 6 9 1111111 6 7777777777777777 3 6 6 9 5 3 1 00 2 99 666 99 99 6 6 6 3 6 6 6 6 6 888 1 3 000000000000000000000000000000000000000000000000000 6 6 666666666666666666666666666666666666666666666666666 00 6 1 7 555555555555 6 99 1 5 5 7 77 5 333333333333333333333333333333333333333333333 000 4444444444 5 5 111 5 0000 5 111111111111111 00000 5 77 4 5 5 5 5 77 1 5 1111111 6 5555555 6 0000000 2 6 99 4444 1 6 6 77 5 77 5 999 77 44444 11111111111 66666666 4 66 5 55 5 0 5 0 5 5 5 777777 5 22 0 444444444444444444444444 1 888 1 5 000 5 88 5 000 5 5 5 666666 333333333333333333333 33
lowQualScore : . . .... . . . . . . .. . . .. .. . . .... . ......................... ....... ... . .. .. .. . . .. .. . . . . . .. . .. . ..... . . .. . ... . . . . .. . . ..... .. ... . . .......... . . . ... . ... . . . . ....... . ................ . . . . . . . .. . .. ... .. .. . . . . . . . . . ... . . ................................................... . . ................................................... .. . . . ............ . .. . . . . .. . ............................................. ... .......... . . ... . .... . ............... ..... . .. . . . . . .. . . ....... . ....... . ....... . . .. .... . . . .. . .. . ... .. ..... ........... ........ . .. . .. . . . . . . . ...... . .. . ........................ . ... . . ... . .. . ... . . . ...... ..................... ..
lowQualScore : 8 3 8888 7 7 3 7 7 5 22 7 0 99 99 0 0 7777 5 1111111111111111111111111 7777777 000 7 77 99 77 1 7 44 22 7 3 5 2 2 66 8 22 7 77777 7 0 22 5 555 7 7 7 7 33 7 7 77777 22 777 7 7 5555555555 7 7 7 777 7 777 7 7 7 3 3333333 7 3333333333333333 3 7 7 8 2 2 0 33 5 22 888 22 22 7 7 7 2 7 7 7 7 7 333 0 2 555555555555555555555555555555555555555555555555555 7 7 222222222222222222222222222222222222222222222222222 00 7 0 8 888888888888 7 22 7 7 7 1 99 7 777777777777777777777777777777777777777777777 000 9999999999 7 7 999 0 6666 0 222222222222222 00000 7 99 0 7 7 7 7 99 4 7 7777777 7 5555555 7 5555555 5 7 22 2222 0 7 7 99 7 99 0 333 99 33333 99999999999 77777777 3 66 7 77 7 9 7 3 7 7 7 111111 7 44 9 333333333333333333333333 0 333 0 7 444 7 33 7 000 7 7 7 444444 444444444444444444444 66
consensus : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCTTTT---TCTTTT---T---CTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTATA------TTTGA-AACCTAATCA-TATCG-CGT-AA-CA-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------A---------TCTTAA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATTGTATA---------AA-TT--TTGAACCN-ATA-GCATTGAAAATAGTG------------AT-GC--TATCAAA-CAAACAAG-CAAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGC------GGC---GGCCAT--T------TTGAAA-ATG-GC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGG-A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-AT---ATCG-CGGCCA----TT--TTGAAAA-TG-GCGG--CCA-TATTGAATTTT-GCGA-GTGGG-T-C--ATAAGCTAATA-TTGAT-TAGTAGAC------GCTCAAA------CC-A-CCANCGCGCNAAG-TTT--CGT-G-CTT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCCGGACTA
Reference ( family-1475 ) : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCTTTT---TCTTTT---T---CTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTATA------TTTGA-AACCTAATCA-TATCG-CGT-AA-CA-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------A---------TCTTAA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATTGTATA---------AA-TT--TTGAACCN-ATA-GCATTGAAAATAGTG------------AT-GC--TATCAAA-CAAACAAG-CAAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGC------GGC---GGCCAT--T------TTGAAA-ATG-GC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGG-A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-AT---ATCG-CGGCCA----TT--TTGAAAA-TG-GCGG--CCA-TATTGAATTTT-GCGA-GTGGG-T-C--ATAAGCTAATA-TTGAT-TAGTAGAC------GCTCAAA------CC-A-CCANCGCGCNAAG-TTT--CGT-G-CTT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCCGGACTA
gi|1 : TATTTC-TAGTATCCATTC-TAGC-TGCATCAT--TCCTTGTTTTCTA--AGATTGACCACATT--TCG--CTCTGT
gi|1 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgCTTG-TTT-TG--AAATGTGTAATTATAGTTA--C-CTGTTGGTGATGCCTTAA-CCTGGCGCCATTG-TTTGATCCTTT-----------TTA---T---CTTTTTTTT----AA-TCA---ATTCTTGATTCGACATCTTGATTTATTACGCCTGAG-TATTTCGTGGACGCCTG-ACATCCAATAATCGTTGCAGGAGAGCG-TATTTTTTGTTAGAGACA-GATTCT-----AACCGAGTCTCTTTTGATAGT-AGAGTCAATTG-TTT-GTTCAT--GGGTCTGATCTA-TTCA-----CAAGAGTAGCCTAATCAGCT-----G----AAATTCTA-C-TAGCAGATTT-TTCACAA-GATATTTTCCCAGA-TTACGTGAAAATGTTCTGG-TCATACTTCTGGCA-ATT-TA------TTTGA-GACCTAATCAGTATCGGCGT-AA-CAATCTCAGTACAGTTTGGGGTATCAAGCA-CAAGCAAACGAA--------AAGTGAAATAC-GTTTC-TGTG-AATAATGAA-A-TTT-TTTCT--CTTT-CAA-TGA-CTG-ATGAAACAGTGAT-A-ATACTA-ACGGGC-GCC-AGTTTTAAATATTGACG-CCAACTTTAAATG-------------------T-TTACGCACAAA--------A---------TCTTAAATGAAAAGCAGTATTTTAAGTA-------------ACC--TAGATCAATTATGTAGATAACACAAA-TTGCTTGAACCCTATA-G-ATTAAAAATAGTA------------ATCGCATTGTCAAAACAACCAAGGCAAAACA--TAATACA-TTATAAA----T----G-CCGGCA---TCTGAAATGGC------A-C---GGCCAA--TAGCTGCTTGAAAGATG-GA-GAGCACATAAGACTTGAATTT-G---------------ACTAATTTCGC-G-TATTTAG--AACTGTT-CAGATAGG-ACAGCACAG-TA-TAGATTGCATTAATC-GAGGG-AATAATAA-TTATGTGGTTAAGGTGCTAGGCATTGGAAAAATAGATATTAGTGTC-TATATTAC--AAAGA-AAATGGAGAAAGCA--AATAGGTGGCCGAT---ATCGACGGCCA----TTGGTTGAAAAATGAGCGG--CCA-TATTGAATTTT-GCGA-GTGGGCT-C--ATAAGCTAATA-TTGATGTAGTAGACA-----GCATAAATGTGAGCC-A-ACAACGACCAAAG-TTT--TGTCGTCTTGTCGCGC-TCAATCAAAGTGAAGCAACGCAATTTT----------TT---------CAC--CAATCAGCCGGatccaggaaagataacttatatcctctacaagtgaacagaggagtttacttgttttgaaatgtgtaattatagttacctgttggtgatgccttaacctggcgccattgtttgatcctttttatcttttttttaatcaattcttgattcgacatcttgatttattacgcctgagtatttcgtggacgcctgacatccaataatcgttgcaggagagcgtattttttgttagagacagattctaaccgagtctcttttgatagtagagtcaattgtttgttcatgggtctgatctattcacaagagtagcctaatcagctgaaattctactagcagatttttcacaagatattttcccagattacgtgaaaatgttctggtcatacttctggcaatttatttgagacctaatcagtatcggcgtaacaatctcagtacagtttggggtatcaagcacaagcaaacgaaaagtgaaatacgtttctgtgaataatgaaattttttctctttcaatgactgatgaaacagtgataatactaacgggcgccagttttaaatattgacgccaactttaaatgtttacgcacaaaatcttaaatgaaaagcagtattttaagtaacctagatcaattatgtagataacacaaattgcttgaaccctatagattaaaaatagtaatcgcattgtcaaaacaaccaaggcaaaacataatacattataaatgccggcatctgaaatggcacggccaatagctgcttgaaagatggagagcacataagacttgaatttgactaatttcgcgtatttagaactgttcagataggacagcacagtatagattgcattaatcgagggaataataattatgtggttaaggtgctaggcattggaaaaatagatattagtgtctatattacaaagaaaatggagaaagcaaataggtggccgatatcgacggccattggttgaaaaatgagcggccatattgaattttgcgagtgggctcataagctaatattgatgtagtagacagcataaatgtgagccaacaacgaccaaagttttgtcgtcttgtcgcgctcaatcaaagtgaagcaacgcaattttttcaccaatcagccgg
gi|10 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgtatttctagtatccattctagctgcatcattccttgttttctaagattgaccacatttcgctctgtatccaggaaagataacttatatcctctacaagtgaacagaggagttta-CATA----T-GAATTTCT---------------ACAAATTTC-A-TATATT-TG--AGTT-CT-CTGA-ATA-AC---ACCAACA-TA-------TCAGTC-GTGCA-A-----AT-TTT-G-----AATTTGCTAG-CAT----AAAAAAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-A---------------------------ACA-TG-GCGGATCCA-TATTGAATTTT-GAGG-GCGAG-T-CCAAT-AGCTAATATTTGATAAAGGAGAC-------CTTAA
gi|11 : --AAACA-A--TTGAAA---CAATTTT-----ATC-AC---TTTT-CCGCCA----TC--TTGAAAA-TG-GCGG--CCA-TATTGAATTTTAAAAA-GTGAG-T-C--CTTAGCTAGTA-TTGAA-GATTATAC------A-TCAAA------TA-A-CCTTTGTGGAAAG-TTT--CAT-G-CTT-TC---C-TC-ATC-AACTGA------GCAATTTTA---------TTATAAATTTGCAT--CAATCAGCCGGActgtagccacacact
gi|12 : aCAATACT--TT---CCCTGTTCGTGATGCTTTAAGTCTGGT-ATTTTGCTTTGATCC--------------------------TTTTTTT----AAACCATTCATTCTTGATTTGA-ATTG--TTTTATTAC-TCTAGC-TATTTT-TGGAC--CTG-ACA-CCATCCATCGTTG
gi|13 : agatgggtttcttaagcttttacttgttttaaaaatgtgtttttCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCT
gi|14 : ctagctgcatcattattaacaacttcgctcgttcccaagaaaggatcacttatatcctctaaactgaacagagattttactttgttttgaaaatgtgtgtgttaaatagttgacTTCGAATATCTT-T--TATCCATTC-TATC-TGTATCATTATTCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCT
gi|15 : aattacatgtactttcaatcagtctgttacaagctggtgaaattgctgttAAG-TTTTCCAT-G-CTT-TC---CCTC-ACG-CACTGA------GCAATTTTGCTTAAAATTTTGG-------CACG-CAATCAGCTGGACT
gi|16 : tacatcaaagaacctttgggCCTTCTTTT---TCTTTT---TTTCCTTTTTTTTTTGGA--TCA---ATTCTTTATTCGT-ATTT--ATTTATTGT-CCTGAG-TATTTC-
gi|17 : AA-CCAACAAA-CAAAACA--AA-TACA-T-----G----TCAAAA-CC---ATTTT-----TTGGCGGGGA-GGG---GGCCATCAT------TTGAA
gi|2 : accTTCCAAAATCTT-C--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--GGATTAACAATTCT--TTG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGGTTTGATCCCTTCTTTT---TCTTTTCTTT---CTTTTTTTT----A--TCA---ATTATTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ATA-CGATCCATCGTTGCAGCAGGGCCACATTCTCTGTCTGG--CA-GATTCT-----A-C----------TTT-TACT-A-AGTCA-TTG-TTTTGTTAAT--GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCGG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTAT-------TTTGA-AACCTAATAA-TATCG-CGT-AACCA-TCT-AGTATAGTGTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACATT--TGAA-A-ATT-GCCTT--TTTT-CAA-TGATCTG-ATGAA-CAGTGAA-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAGAT--------------------T-ATAC-----AA--------A---------TCTCAA-GTATAAG-AGCTTTCTAAGTACATATGTAA--CCATCA-TAGATCAATTGTATA---------AA-TT--TTGAACCT-AAA-ACATTAAAAATAGTG------------AT-GC--TATCAAA-CAAGCAAG-CGAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGCGG----GGCGGGGGCCA---T------TTGAAA-GTG-GC-A-GC-CATA----TTGAATTT-T---------------ACTAATTTCAG-T-TATT-AG--AA-T-TT-CAAA-ATA-AC--C-CCATTA-TA-------TTAATC-GA-GG-A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TTATG-C-TATTTAAC--AAACA-A--TGG-AAA--CA--TAT-----GCC-AT---ATGG-CGGCCANNNNNN--NNNNNNN-NN-NNNN--NNN-NNNNNNNNNNN-NNNN-NNNNN-N-N--NNNNNNNNNNN-NNNNN-NNNNNNNN------NNNNNNN------NN-N-NNNNNNNNNNNNN-NNN--NNN-N-NNN-NN---N-NN-NNN-AAGTGA------GCAATTTT----------TT---------CAC--TAATCAGCCGGACTA
gi|3 : TTC-AAT-TCTTGC--TATCCATTC-TAGCCTGAATCAT-ATCCT-G-TCTATATAAGAT-AACAATT----TCG--CTCTGTTC-TGATGCCT--AACCTGGT-CAAT-GCTTTGATCC-------------TCTT---T---CTTTTTTTT--------------TTCCTGGATCAA---------TTATTATATCTGAGATATTT--TCGAC--CTATACA-C------TTGT-GCA-CACATC-ACATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-CTTTGTTCACCAGGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----GCTCGAGATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTTTGGTACATTACAGGTAG-TTTGA-AACCTAAT----------------CA-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTT-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACAGCCATATCTAAAT--------------------T-TTAC-----AA--------GTCTTTTAACTCTTAA-TCATAAG-AGCTTTCTAAG--------TAA--CCACCA-T------------------------G-TT--TTGAACCA-ATA-GCATTGAAAATAGTGATGCTTATAATCAT-GC--TATCAAA-CAAACAAG-C-AAACA--TA-TACA-T-----GTACTT----A-CC---A---T-----AT---------GGC---GGCCAT--T------TTGAAA-ATG-GCTG-GC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGGAA----TAT-TTT-------AAAGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC--N---NNNN-NNNNNN----NN--NNNNNNN-NN-NNNN--NNN-NNNNNNNNNNN-NNNN-NNNNN-N-N--NNNNNNNNNNN-NNNNN-NNNNNNNN------NNNNNNN------NN-N-NNNNNNNNNNNNN-NNN--NNN-N-NNN-NN---N-NN-NNN-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCCta
gi|4 : TTCGAAT---TT-T--T-TCCATTCCTATC-TGTATCGATATTCTTG-T-TCTC--AGATGAACAATTCT--TCGTCTTCTGTTCatgag
gi|4 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttTTTGTTCGTG-TGC-TTAAGC-TGGT-C--TTGC-----------CTTTTGGATCTTTT---T------TTTATT----A--TCA---ATT-TTGATTCGA--TTT--ATTTATTA--CCTG-T-TATCTT-GGAAC--CTG-AC--CCATCC-TCGTTGGGACGCAGGTAT-TTTTCTGTCAGG--CAAGATTCTGAATCA-CTA--T-TCCTTT---ACTGA-AGTTA-TTG-TTTTGACCATC-GGGTCTG-TCGA-TT-ATTCAGCAAG--TA---TA-TT-GCT-----A----AAATTCTAAC-TACGAGATTTCTTCA-AACGAT-TTTTTC---AGTTTTG---AA----TTTGG-TCAT-CTTCTGGCA-ATTAT--------TTGAGAACCTAATCA-TAGTG-CGT-AA-CAATCT-AGTAC-GTTTGGGTGATCAAGTA--AAACAA-TAAGAG-----GTAGTGAA-TACAGTTTCCTGTAGCAT--TGGA-G-ATT--CCTTACTTTT-CAA-TGATCTG-AT--A-CAGTGATTA-CTGATAGACGGGCCGCCCA-TTTTT-GAGATGA-GGCCATATTTAATT--------------------TATTAC-----AA--------A---------TTGTAA-TCATAAG-AGCTTTTTAA-T-------TAA--CC--CAGTAGAT-AATTGTATA---------AAATTA-TTGAAACT-ATG-GCATT-AAAACAGTG------------AT-GC--T-TCATG-CAAA-AAG-CATAATAACTA-TACA-T-----A----T--------------------------------GGC---AGCCAT--T------TTGAAA-ATG-GC-A-GC-CATA----TTGAATTT-T---------------ACTcaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaactttttgttcgtgtgcttaagctggtcttgccttttggatcttttttttattatcaattttgattcgatttatttattacctgttatcttggaacctgacccatcctcgttgggacgcaggtatttttctgtcaggcaagattctgaatcactattcctttactgaagttattgttttgaccatcgggtctgtcgattattcagcaagtatattgctaaaattctaactacgagatttcttcaaacgattttttcagttttgaatttggtcatcttctggcaattatttgagaacctaatcatagtgcgtaacaatctagtacgtttgggtgatcaagtaaaacaataagaggtagtgaatacagtttcctgtagcattggagattccttacttttcaatgatctgatacagtgattactgatagacgggccgcccatttttgagatgaggccatatttaatttattacaaattgtaatcataagagctttttaattaacccagtagataattgtataaaattattgaaactatggcattaaaacagtgatgcttcatgcaaaaagcataataactatacatatggcagccattttgaaaatggcagccatattgaattttact
gi|5 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttttcgaattttttccattcctatctgtatcgatattcttgttctcagatgaacaattcttcgtcttctgttccaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaacttTTT---TTTTTT---T---GTGTTTTTT----A--TCA---ATTCTTGATACGA-ATTT--ATTTATCCT-CGCAAG-TA-TTC-TGGAC--CCG-TCACCCCTCCATCGTTGCAGCAGAGTAATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTGCCTTTGTTCACCAGGGTCTGATCTAGTT-A-----CAAG--TA--ATA-TC-GCTGCTCGG----AGATTCTA-CTTATGAG-TTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGGTTCAT-CTTTTGGTACATTACAGGTTAGTTTGA-AACCTAAT----------------CA-TCT-AGTATAGTTT-GGTGATCAAGCATCAAACAAAT-AAGGAATAAGAAGTGAAATACA-TTTT-TGTACAAT--TGAACATATTGGCCTT--CTTTCCAATTGATCTGTATG-A-CAGTGAT-ATCTACTA-AC-GGC-GCC-A-TTTTAAGAGATGACAGCCATATCT-AAT--------------------T-TTAC-----AATGTCTTTTAACT------CCTTAA-TCATAAG-AGCTTTCTAAGTA-------AGTCCCACC---AGGT----------------------TT--TTGAACCA-ATAGGCATTGAAAATAGTGATGCTTATATC-AT-GC--TATCAAA-CAAACAAG-C-AAACA--TA-TACATT-----G----T----ATCC---A---T-----GTTCCACTACTGGC---GGCCAT--T------TTGAAA-ATGTGG-T-GC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TATT-AG--AGCT-TTCCAAA-ATA-AC--CACCA-TA-TA-------TTAATCGGAGGA-A----TAT-TTT-------AAAGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAACAAAAACA-A--TGG-AAA--CA--TAT-----GCC-ATA--ATCG-CGGCCA----TT--TTG-AAA-TG-GCGGTCTCA-TATTGAATTTT-GCGA-GTGGG-TCC--AT-ATCTAATA-TTGAT-TAGTAG-----------CAAA------CCTATCCATC-CACCAAA-TTT--GGT-G-TTT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCC
gi|6 : ttgTTCCAATATCTT-T--TATCCATTC-TAGC-TGCATCAGTCTCTTatgagatctattag
gi|7 : atttttgaacaactacttgttcccttctacttgccaaaaagcttcccaatggcctgaaactttagaatctggtaaaacaatctttcttctcagaccctttcctcttctagatttttccaatgttttcaggctgtctgaaaaatacttgctccaaattataccaactcgtctgacactatcttcaaacgtcttaacacccccccccttttttttttgtcttcagcatgttgataaagacaacaccatcaatggcaaaagtatcaactttcggagcctcgcaacttaattaatattcagaaatattttgtagcaaaacaagacccgatttttattcatgccattaatcacaaaattgtcattgagattatggatatgcttagttgtcatgtttataaaaacgtcataagatcaccatttcgaacttgacgtgaaacatgtaactgagaaaagagagaagagctttgtttcaatgacgcaatctgttgtgttctaggttgttgacaactaaatacaacttgcttgttttgcttactgggttcgtatatagactttgaactactttcaatcagtctgctacaagctggtgaaattgctgttTCTGTGAAG--TC-GATTTT-----A-CCA--TCTTCTTTC--ACT-A-AGTCA-TTG-TTCTGCTCAT--GGATCTGATGTA-TT-A-----CATG--TA--CTA-TC-GCT-----G----AAAATCTA-C-CGTAAGATTTCTTCACAACGAT-TTTTTC---A-TTCTG---AAAC-TTCTGG-TCAT-CTTCCGGCATATTAT-------TTTGA-AGCGTATTCA-TATCG-TCTAAA-CA-ATT-AGTATAGTTTGGATGATCAAGCG-CAATAAAAT----GAATAAAAAGTGAAATACAATTT--TGTACAAT--TATA-A-ATT-GTCCT--ACTT-CAA-TGTTCTG-ATGAA-CAGTGAT-A-GTACTA-ACGGGT-GCT-C-TTTTAAGAGATGATGGCCATATT--GATTTTTTTTTTTTTTTTTTTTTT-TTAC-----AA--------A---------TTTTGA-TTATTAG-AGCTTTCTAAG--------TAA--GCACCA-TAGATCAATTGTATA---------A---------------GTA-GT----AAAATAGCG------------AT-GC--TATGATA-CAAACAAG-CAAAACA--TA-----------------T----A-CC---A---T-----AT---------GAC---GACCAT--T------TTGAAA-ATG-GT-G-GC-CATA----TTGAATTC-TGAGAGTTGGTCCATAGCTAACATTGA-T-CAGT-AG--A-CT-T----AG-ATATAC--CACCA-CA-act
gi|8 : ttacatgta------TTGAAA-GTG-GC-A-GC-CATA----TTGAATTT-T---------------ACTAATTTCCAGT-TATT-AAGAAACT-TT-CAAA-ATA-AC--CACTA-TAGTA-------TTAATC-GAGA--A----TTTATTTTG-----AAG-TGCTAG-CATTG--AAAATAG----TTTAG-CATATTTA-C--AAACAGA--TGGAA----CA--TAT-----GC--ATGTCATCG-CGGCCA----TT--TTGAAA--TG-GGGG--CCAATAT-GAATTTT-GCGATGTGGG-T-CC-ATA-GATAATA-TTGAT-TAGTAGACCTTCAGGCTAAAA------GT-A-CCACCACACCAAGATTT--GGT-G--TT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CACATC-ATCAGCCGGAccaaatcggtgctttcctcatcaagtgagcaatttttgtcaccaatcagccgaagta
blockSeqs : C A GC C C T . T C TA G A AG TC T G ATT C CTTCTTTTTCTTTTTTTCC TTGGA TTC A . TA A T . T C C A G CA . A GAATC . C . C TT G . . C CA G . TTCAG . C . . GCTCGG A T . . G . . T . C AGGTTAG G AATATCGCGTAAC A . T A G A G CC C . CAT GG AC C T T A . T T G C CA C A TTTTTTTTTTTTTTTTTTTTTTTACAAA . . TACATATGTAACCATCATAGATCAATTGTATAAATT T G C A ATGCTTATAATC . . A . . A AC . TGTCAAAACCATTTTTTGGCGGGGA GGG TCAT . T TG . . C GAGAGTTGGTCCATA CAGT . GA G . C . T . A G . G GAA A TG T . . . G . A AA G . A A AT . ATGTCATCG NNNNNN A A . AT A A T . C CAATA T AA CTTCAGGCTAAAAGTA T GTG A A TCC . C . . C . . . GCTTAAAATTTTGG AT
blockSeqs : G A T . . T . C C . G C . . C G CCT C CTTCTTTTTCTTTTCTTTC AAA . A . C . C . . . G A A TA . . . . T . C TT . . . . CA . . . . C . . GCTCG . . . . . . . . . C AGGTAG . CATATCGTCTAAA . . . A G A G C C . A G . . . . A . . . . . A C A TTTACAATGTCTTTTAACT . . TTAACCCAGTAGATAATTGTATAAAATTA A . C G ATGCTTATATC . . A . . G . . TTGTATCCATGTTCCACTACT . TT . . A . . . . ATA . . A . . . . . T . . . AA . TG G . . . T . . . . . A A . . ATAATCG TC N A . TC . . . . . CTTA . G NNNNNNNNNN N NNN N . C . C . . . . . . ATTATAAATTTG G
blockSeqs : C A C . . T . C A . T C . . C G CCT G CTTTTGGATCTTTTT A . A . T . C . . . C A G AA . . . . C . C TT . . . . C . . . . A . . G . . . . . . . . . C . . CATAGTGCGTAA . . . A A A G T G . A G . . . . A . . . . . A C A TTTACAAGTCTTTTAAC . . TAAGCACCATAGATCAATTGTATAA T . C G . . . A . . A . . TGTACCATATGGCGG . TT . . A . . . . AGT . . G . . . . . . . . . GA . G G . . . G . . . . . A A . . ACTTTT NN N N . . . . . . . NNNN . N NNNNNNNNNN N NNN N . N . N . . . . . . TT .
blockSeqs : . . T . . T . C C . G C . . C A CAA C TCTTTC A . A . T . T . . . C . . A . . . . C . . C . . . . . . . . . C . . A . . . . . . . . . T . . . . . . . G A A T C . G G . . . . . . . . . . A T . TATTACAAA . . TAAGTCCCACCAGGTTT A . C . . . . A . . A . . TGTACTTACCATAT . TT . . T . . . . AAT . . G . . . . . . . . . AA . . G . . . G . . . . . A A . . ATATGG TT A N . . . . . . . NNNN . N ATCAAATAA T ACA C . N . N . . . . . . TT .
blockSeqs : . T . . . . . . . . C . . . G C C . A . . . T . C . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . C . A . . . . . . . . . . . C . . TATACAAA . . TAACCACCATGTT . . T . . . . . . . . . . TACCATAT . TT . . G . . . . AAT . . A . . . . . . . . . A . . . . . . T . . . . . . . . . NNNNN TT . A . . . . . . . CATA . T CAAACCTAT C CA C . G . T . . . . . . TT .
blockSeqs : . . . . . . . . . . . . . . . TAT . T . . A . . . . GAT . . . . . . . . . . . . . . . . . A . . . . . . . . . . ATA . T . G . . . . . . . . TT .
blockSeqs : . . . .
blockSeqCons : T*** CCT* CTTCTTCTTTTCTTCC********* A****** A* ** T* C* ** NA ** ** TT* ** C** *** *** ******* CATACGCTAA****** ** A** N* ** TGTACCATATC********************************** TT******** A** **** ** ******* AA***** G****** ** **** ** A** ***** ATATCG***** TT****** A* T* CTNAANTATA************** C* *** ******
originalCons : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCTTTT---TCTTTT---T---CTTTTTTTT----A--TCA---ATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTATA------TTTGA-AACCTAATCA-TATCG-CGT-AA-CA-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------A---------TCTTAA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATTGTATA---------AA-TT--TTGAACCN-ATA-GCATTGAAAATAGTG------------AT-GC--TATCAAA-CAAACAAG-CAAAACA--TA-TACA-T-----G----T----A-CC---A---T-----ATGGC------GGC---GGCCAT--T------TTGAAA-ATG-GC-G-GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGG-A----TAT-TTTTG-----AAGGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCC-AT---ATCG-CGGCCA----TT--TTGAAAA-TG-GCGG--CCA-TATTGAATTTT-GCGA-GTGGG-T-C--ATAAGCTAATA-TTGAT-TAGTAGAC------GCTCAAA------CC-A-CCANCGCGCNAAG-TTT--CGT-G-CTT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCCGGACTA
finalCons : TTCNAATATCTTT---TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGTCCT-TTGCTTTGATCCCTTCTTCTTTTCTTCC---------TTTTTTTTA------TCA---ATTCTTGATTCGAA-TTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTTT-ACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TAC--TA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTAT-------TTTGA-AACCTAATCATACGCTAA------CA-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATGAA-CAGTGAT-A-CTACTA-ACGGGC-GCCA--TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------A---------TCTTAA-TCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATTGTATA---------AA-TT--TTGAACCN-ATA-GCATTGAAAATAGTG------------AT-GC--TATCAAA-CAAACAAG-CAAAACA--TA-TACATGTACCATATC----------------------------------GGC---GGCCATT--------TTGAAA-ATG-GCA--GC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TATT-AG--AGCT-TT-CAAA-ATA-AC--CACCA-TA-TA-------TTAATC-GAGGAA-----TAT-TTTG------AAGGTGCTAG-CATTG--AAAATAG----TGATG-C-TATTTAAC--AAACA-A--TGGAAAA--CA--TAT-----GCCATATCG-----CGGCCATT------TTGAAAA-TG-GCGG--CCA-TATTGAATTTT-GCGA-GTGGG-T-C--ATAAGCTAATA-TTGATT-AGTAGACCTNAANTATA--------------CCANCGCGCNAAG-TTT--CGT-GC-TT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------TT---------CAC--CAATCAGCCGGACTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATCTATAACAAATACATCAACTTTCGGAGCTGCTTGACTACTTTTCTCTAGCTGCACACCGGCAAGGCCGTAATGCCATATATTGTGATAGGAAAATGGATAAACTTGTTAATTAGCCATGTTTGACACCCCATAATATCACCATTTTGAACTTGGCATTAAACGTGTAACATTGACGAAATATCCATTGATTCGGTTTTAGGTTGTTGACGACTTAAACAAAAAGAGCTTGTTT
Alignments
lowQualScore : 1111 3333333333333 1111 11 11 1 11111 111 22 11111 111 2222222222 111 111 4444444 7777777777777777777 11 888888888888888888888888888888888888888888888888888 666666666666666666666666666666666666666666666666666 666666666666 9999999999999999999999999999999999999999999999999999999999999 1111111111 111 1111 222222222222222 1 1111111 2222222222222222222222222 1111 11111 11111111111 1111111111111 11 2222222 11 2222222222222222222222 111111 1111 111111 4444444444444444444444 11
lowQualScore : 8 7 1111 6 6 7 6 3 2 99 6 3 77 77 1 1 9999 3 6 5555555555555 99 0 1 2222 0 00 77 33 0 5 77 99 6 3 2 3 3 99 0 99 6 66666 6 1 99 2 555 6 6 6 6 88 6 6 66666 99 111 6 6 3333333333 6 6 6 111 6 111 6 6 6 5 0000000 3 2 3333333333333333333 6 6 9 5 3 1 00 2 99 666 99 99 6 6 6 99 6 6 6 6 888 44 3 000000000000000000000000000000000000000000000000000 6 6 666666666666666666666666666666666666666666666666666 6 3 6 1 7 555555555555 6 99 1 6 5 7 8888 4444444444444444444444444444444444444444444444444444444444444 4444444444 5 5 000 5 0000 4 777777777777777 666 5 5 66 2 5 5 0 5 5 66 0 5 8888888 5 5555555555555555555555555 66 5 1 77 2222 5 5 5 66 66 5 66 9 66 22222 77777777777 5555555555555 5 33 5 5 2 5 5 5555555 5 11 2222222222222222222222 1 666666 1 5 2222 5 66 5 888 5 5 5 444444 0000000000000000000000 11
lowQualScore : . . .... . . . . . . .. . . .. .. . . .... . . ............. .. . . .... . .. .. .. . . .. .. . . . . . .. . .. . ..... . . .. . ... . . . . .. . . ..... .. ... . . .......... . . . ... . ... . . . . ....... . . ................... . . . . . . .. . .. ... .. .. . . . .. . . . . ... .. . ................................................... . . ................................................... . . . . . ............ . .. . . . . .... ............................................................. .......... . . ... . .... . ............... ... . . .. . . . . . . .. . . ....... . ......................... .. . . .. .... . . . .. .. . .. . .. ..... ........... ............. . .. . . . . . ....... . .. ...................... . ...... . . .... . .. . ... . . . ...... ...................... ..
lowQualScore : 8 3 8888 7 7 3 7 7 5 22 7 0 99 99 0 0 7777 2 7 5555555555555 44 4 4 1111 7 77 99 77 1 7 44 22 7 3 5 2 2 66 8 22 7 77777 7 0 22 5 555 7 7 7 7 33 7 7 77777 22 777 7 7 5555555555 7 7 7 777 7 777 7 7 7 2 8888888 2 5 8888888888888888888 7 7 8 2 2 0 33 5 22 888 22 22 7 7 7 88 7 7 7 7 333 77 2 555555555555555555555555555555555555555555555555555 7 7 222222222222222222222222222222222222222222222222222 7 3 7 0 8 888888888888 7 22 7 7 7 1 3333 9999999999999999999999999999999999999999999999999999999999999 9999999999 7 7 999 0 6666 4 888888888888888 222 0 0 99 2 0 0 5 0 0 99 0 0 6666666 7 3333333333333333333333333 00 7 4 99 1111 7 7 4 99 99 0 99 4 99 55555 22222222222 0000000000000 0 88 0 0 1 0 0 9999999 0 66 0000000000000000000000 0 111111 0 0 9999 0 00 0 888 0 0 0 444444 8888888888888888888888 99
consensus : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCT---T---CTTTTTTTCCTTTTTTTT----ATCAATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTAT-------TTTGAAACCTAATCA-TA-C--G-CGT-AAC-A-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATG-AACAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------A---------TCTT-AATCATAAG-AGCTTTCTAAGT-------TAA--CCACCA-TAGATCAATTGT---------ATAAA-TT--TTGAA-CCTATA-GCATTGAAAATAGTG------------AT-GC--TATC-AAACAAACAA-GCAAAACA--T-ATACA-T-----G----T----A-CC-A--------TAT-------C------GG--C--------GGCCAT--T------TTGAAA-ATG-G-C-GGC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TA-TTA--GAGCT-TT-CAAA-ATA-AC--CACCA-TA-T-------ATTAATC-GA-GGAA--T----A-TTTTG-----AAGGTGCTA-GCATTG--AAAATAG----TGATG-C-TATTTAAC--AA--ACA-ATG--GAAAACA--TAT-----GCC-AT---ATCG-CGGCCA----TT--TTG-AAAATG-GCGG--CCATAT-TGAATTTT-GCGA-GTGGG-TCC--AT-AGCTAATA-TTGAT-NAGTAGAC--CT------TAAATGT--A-CCACC-GCG--CCAAG-TTT--C-GT-G-CTT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------T-T---------CAC--CAATCAGCCGGACTA
Reference ( family-1475 ) : TTCNAATATCTT-T--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCT---T---CTTTTCTTCCTTTTTTTT----ATCAATTCTTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ACA-CCATCCATCGTTGCAGCAGAGCNATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-TTTTGTTCATC-GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTAT-------TTTGAAACCTAATCA-TA-C--G-C-T-AAC-A-TCT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATG-AACAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAAAT--------------------T-TTAC-----AA--------A---------TCTT-AATCATAAG-AGCTTTCTAAGTA------TAA--CCACCA-TAGATCAATTGT---------ATAAA-TT--TTGAA-CCNATA-GCATTGAAAATAGTG------------AT-GC--TATC-AAACAAACAA-GCAAAACA--T-ATACA-T-----G----T----A-CC-A--------TAT-------C------GG--C--------GGCCAT--T------TTGAAA-ATG-G-C-AGC-CATA----TTGAATTT-T---------------ACTAATTTCGA-T-TA-TTA--GAGCT-TT-CAAA-ATA-AC--CACCA-TA-T-------ATTAATC-GA-GGAA--T----A-TTTTG-----AAGGTGCTA-GCATTG--AAAATAG----TGATG-C-TATTTAAC--AA--ACA-ATG--GAAAACA--TAT-----GCC-AT---ATCG-CGGCCA----TT--TTG-AAAATG-GCGG--CCATAT-TGAATTTT-GCGA-GTGGG-T-C--ATAAGCTAATA-TTGAT-TAGTAGAC--CT------NAANTAT--A-CCANC-GCG--CNAAG-TTT--C-GT-G-CTT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------T-T---------CAC--CAATCAGCCGGACTA
gi|1 : TATTTC-TAGTATCCATTC-TAGC-TGCATCAT--TCCTTGTTTTCTA--AGATTGACCACATT--TCG--CTCTGT
gi|1 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgCTTG-TTT-TG--AAATGTGTAATTATAGTTA--C-CTGTTGGTGATGCCTTAA-CCTGGCGCCATTG-TTTGATCC-------------TTTTTATCTTTTTTTTA----ATCAATTCTTGATTCGACATCTTGATTTATTACGCCTGAG-TATTTCGTGGACGCCTG-ACATCCAATAATCGTTGCAGGAGAGCG-TATTTTTTGTTAGAGACA-GATTCT-----AACCGAGTCTCTTTTGATAGT-AGAGTCAATTG-TTT-GTTCAT--GGGTCTGATCTA-TTCA-----CAAGAGTAGCCTAATCAGCT-----G----AAATTCTA-C-TAGCAGATTT-TTCACAA-GATATTTTCCCAGA-TTACGTGAAAATGTTCTGG-TCATACTTCTGGCAATTTAT-------TT-GAGACCTAATCAGTA-TCGG-CGT-AAC-AATCTCAGTACAGTTTGGGGTATCAAGCA-CAAGCAAACGAA--------AAGTGAAATAC-GTTTC-TGTG-AATAATGAA-A-TTT-TTTCT--CTTT-CAA-TGA-CTG-ATGAAACAGTGAT-A-ATACTA-ACGGGC-GCC-AGTTTTAAATATTGAC-GCCAACTTTAAATG-------------------T-TTACGCACAAA--------A---------TCTTAAATGAAAAGCAGTATTTTAAG--------TAA--CC-----TAGATCAATTATGTAGATAACACAAA-TTGCTTGAACCCTATA-G-ATTAAAAATAGTA------------ATCGCATTGTCAAAACAACCAAGGCAAAACA--TAATACA-TTATAAA----T----G-CCGG--------CAT-------CTGAAATGGCAC--------GGCCAA--TAGCTGCTTGAAAGATG-GAG-AGCACATAAGACTTGAATTT-G---------------ACTAATTTCGC-G-TATTTA--GAACTGTT-CAGATAGG-ACAGCACAG-TA-TAGATTGCATTAATC-GAGGGAA--TAATAA-TTATGTGGTTAAGGTGCTAGGCATTGGAAAAATAGATATTAGTGTC-TATATTAC--AAAGAAA-ATGGAGAAAGCA--AATAGGTGGCCGAT---ATCGACGGCCA----TTGGTTGAAAAATGAGCGG--CCATAT-TGAATTTT-GCGA-GTGGGCT-C--ATAAGCTAATA-TTGATGTAGTAGACAGCA------TAAATGTGAG-CCAACAACGACCAAAG-TTT--T-GTCGTCTTGTCGCGC-TCAATCAAAGTGAAGCAACGCAATTTT----------T-T---------CAC--CAATCAGCCGGatccaggaaagataacttatatcctctacaagtgaacagaggagtttacttgttttgaaatgtgtaattatagttacctgttggtgatgccttaacctggcgccattgtttgatcctttttatcttttttttaatcaattcttgattcgacatcttgatttattacgcctgagtatttcgtggacgcctgacatccaataatcgttgcaggagagcgtattttttgttagagacagattctaaccgagtctcttttgatagtagagtcaattgtttgttcatgggtctgatctattcacaagagtagcctaatcagctgaaattctactagcagatttttcacaagatattttcccagattacgtgaaaatgttctggtcatacttctggcaatttatttgagacctaatcagtatcggcgtaacaatctcagtacagtttggggtatcaagcacaagcaaacgaaaagtgaaatacgtttctgtgaataatgaaattttttctctttcaatgactgatgaaacagtgataatactaacgggcgccagttttaaatattgacgccaactttaaatgtttacgcacaaaatcttaaatgaaaagcagtattttaagtaacctagatcaattatgtagataacacaaattgcttgaaccctatagattaaaaatagtaatcgcattgtcaaaacaaccaaggcaaaacataatacattataaatgccggcatctgaaatggcacggccaatagctgcttgaaagatggagagcacataagacttgaatttgactaatttcgcgtatttagaactgttcagataggacagcacagtatagattgcattaatcgagggaataataattatgtggttaaggtgctaggcattggaaaaatagatattagtgtctatattacaaagaaaatggagaaagcaaataggtggccgatatcgacggccattggttgaaaaatgagcggccatattgaattttgcgagtgggctcataagctaatattgatgtagtagacagcataaatgtgagccaacaacgaccaaagttttgtcgtcttgtcgcgctcaatcaaagtgaagcaacgcaattttttcaccaatcagccgg
gi|10 : tgtactgagtgcaaaaagtagaagggagctttttgttgcaaatgacgcaatctgttggtgtgctagttgttgaacaactgtaaataagcacgtcttgttttccttaatggtgttcgtaaaataaactttgaatttctttcaatccagtctgtctactagagctgctgataattgctgtatttctagtatccattctagctgcatcattccttgttttctaagattgaccacatttcgctctgtatccaggaaagataacttatatcctctacaagtgaacagaggagttta-CATA----T-GAATTTCT---------------ACAAATTTC-A-TATA-TTT--GAGTT-CT-CTGA-ATA-AC---ACCAACA-T-------ATCAGTC-GT-GCAA-------A-TTTTG-----AATTTGCTA-GCAT----AAAAAAG----TGATG-C-TATTTAAC--AA--ACA-ATG--GAAAACA--TAT-----GCC-A----------------------------ACATG-GCGGATCCATAT-TGAATTTT-GAGG-GCGAG-T-CCAAT-AGCTAATATTTGATAAAGGAGAC--CT------TAACTGT--AGCCA
gi|11 : --AA--ACA-ATT--GAAA-CAATTTT-----ATC-AC---TTTT-CCGCCA----TC--TTG-AAAATG-GCGG--CCATAT-TGAATTTTAAAAA-GTGAG-T-C--CTTAGCTAGTA-TTGAA-GATTATAC--AT------CAAATA---A-CCTTT-GTG--GAAAG-TTT--C-AT-G-CTT-TC---C-TC-ATC-AACTGA------GCAATTTTA---------T-TATAAATTTGCAT--CAATCAGCCGGAcacact
gi|12 : aCAATACT--TT---CCCTGTTCGTGATGCTTTAAGTCTGGT-ATTTTGCTTTGATCCTTT----------TTTTAAACC------------ATTCATTCTTGATTTGA-ATTG--TTTTATTAC-TCTAGC-TATTTT-TGGAC--CTG-ACA-CCATCCATCGTTG
gi|13 : agatgggtttcttaagcttttacttgttttaaaaatgtgtttttCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGCTTTGATCCCTTCT---
gi|14 : ctagctgcatcattattaacaacttcgctcgttcccaagaaaggatcacttatatcctctaaactgaacagagattttactttgttttgaaaatgtgtgtgttaaatagttgacTTCGAATATCTT-T--TATCCATTC-TATC-TGTATCATTATTCTTG-TCTCTA--AGATGAACAATTCT--TCG--CTCT
gi|15 : aattacatgtactttcaatcagtctgttacaagctggtgaaattgctgttAAG-TTTTCC-AT-G-CTT-TC---CCTC-ACG-CACTGA------GCAATTTTGCTTAAAATTT-TGG-------CACG-CAATCAGCTGGACT
gi|16 : tacatcaaagaacctttgggCTTTT---T---CTTTTTTTCCTTTTTTTTTTGGATCAATTCTTTATTCGT-ATTT--ATTTATTGT-CCTGAG-TATTTC-
gi|17 : ccttAACCAACAA-ACAAAACA--A-ATACA-T-----G----TCAAAA-CC-ATT------TTT-------T------GG--CGGGGAGGGGGCCATCAT------TTGAA
gi|2 : accTTCCAAAATCTT-C--TATCCATTC-TAGC-TGCATCATTATCCTTG-TCTCTA--GGATTAACAATTCT--TTG--CTCTGTTCGTGATGCCTTAAGCCTGGT-CCTTTGGTTTGATCCCTTCT---TTTTCTTTTCTTTCTTTTTTTT----ATCAATTATTGATTCGA-ATTT--ATTTATTAT-CCTGAG-TATTTC-TGGAC--CTG-ATA-CGATCCATCGTTGCAGCAGGGCCACATTCTCTGTCTGG--CA-GATTCT-----A-C----------TTT-TACT-A-AGTCA-TTG-TTTTGTTAAT--GGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----G----AAATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCGG---AAAT-TTCTGG-TCAT-CTTCTGGCACATTAT-------TTTGAAACCTAATAA-TATC--G-CGT-AACCA-TCT-AGTATAGTGTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTC-TGTACATT--TGAA-A-ATT-GCCTT--TTTT-CAA-TGATCTG-ATG-AACAGTGAA-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACGGCCATATTTAGAT--------------------T-ATAC-----AA--------A---------TCTC-AAGTATAAG-AGCTTTCTAAGTACATATGTAA--CCATCA-TAGATCAATTGT---------ATAAA-TT--TTGAA-CCTAAA-ACATTAAAAATAGTG------------AT-GC--TATC-AAACAAGCAA-GCGAAACA--T-ATACA-T-----G----T----A-CC-A--------TATGGCGGGGC------GG--G--------GGCCA---T------TTGAAA-GTG-G-C-AGC-CATA----TTGAATTT-T---------------ACTAATTTCAG-T-TA-TTA--GAA-T-TT-CAAA-ATA-AC--C-CCATTA-T-------ATTAATC-GA-GG-A--T----ATTTTTG-----AAGGTGCTA-GCATTG--AAAATAG----TTATG-C-TATTTAAC--AA--ACA-ATG--G-AAACA--TAT-----GCC-AT---ATGG-CGGCCANNNNNN--NNN-NNNNNN-NNNN--NNNNNN-NNNNNNNN-NNNN-NNNNN-N-N--NNNNNNNNNNN-NNNNN-NNNNNNNN--NN------NNNNNNN--N-NNNNN-NNN--NNNNN-NNN--N-NN-N-NNN-NN---N-NN-NNN-AAGTGA------GCAATTTT----------T-T---------CAC--TAATCAGCCGGACTA
gi|3 : TTC-AAT-TCTTGC--TATCCATTC-TAGCCTGAATCAT-ATCCT-G-TCTATATAAGAT-AACAATT----TCG--CTCTGTTC-TGATGCCT--AACCTGGT-CAAT-GCTTTGATCC----------------TCTTTCTTTTTTTT---------TTCCTGGATCAA---------TTATTATATCTGAGATATTT--TCGAC--CTATACA-C------TTGT-GCA-CACATC-ACATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTG-CTTTGTTCACCAGGGTCTGATCTA-TT-A-----CAAG--TA--CTA-TC-GCT-----GCTCGAGATTCTA-C-TATGAGATTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGG-TCAT-CTTTTGGTACATTACAGGTAG-TTTGAAACCTAATCA-T------------------CT-AGTATAGTTTGGGTGATCAAGCA-CAAACAAATAAAGGAATAAGAAGTGAAATACAGTTTT-TGTACAAT--TGAA-A-ATT-GCCTT--CTTT-CAA-TGATCTG-ATG-AACAGTGAT-A-CTACTA-ACGGGC-GCC-A-TTTTAAGAGATGACAGCCATATCTAAAT--------------------T-TTAC-----AA--------GTCTTTTAACTCTT-AATCATAAG-AGCTTTCTAAG--------TAA--CCACCA-T------------------------G-TT--TTGAA-CCAATA-GCATTGAAAATAGTGATGCTTATAATCAT-GC--TATC-AAACAAACAA-GC-AAACA--T-ATACA-T-----GTACTT----A-CC-A--------TAT--------------GG--C--------GGCCAT--T------TTGAAA-ATG-G-CTGGC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TA-TTA--GAGCT-TT-CAAA-ATA-AC--CACCA-TA-T-------ATTAATC-GAGGGAA--T----A-TTTT------AAAGTGCTA-GCATTG--AAAATAG----TGATG-C-TATTTAAC--AA--ACA-ATG--GAAAACA--TAT-----GCC--N---NNNN-NNNNNN----NN--NNN-NNNNNN-NNNN--NNNNNN-NNNNNNNN-NNNN-NNNNN-N-N--NNNNNNNNNNN-NNNNN-NNNNNNNN--NN------NNNNNNN--N-NNNNN-NNN--NNNNN-NNN--N-NN-N-NNN-NN---N-NN-NNN-AAGTGA------GCAATTTT----------T-T---------CAC--CAATCAGCCta
gi|4 : TTCGAAT---TT-T--T-TCCATTCCTATC-TGTATCGATATTCTTG-T-TCTC--AGATGAACAATTCT--TCGTCTTCTGTTCatgag
gi|4 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttTTTGTTCGTG-TGC-TTAAGC-TGGT-C-------TTG---CCTTTTGGAT---CTTTT------TTTTATT----ATCAATT-TTGATTCGA--TTT--ATTTATTA--CCTG-T-TATCTT-GGAAC--CTG-AC--CCATCC-TCGTTGGGACGCAGGTAT-TTTTCTGTCAGG--CAAGATTCTGAATCA-CTA--T-TCCTTT---ACTGA-AGTTA-TTG-TTTTGACCATC-GGGTCTG-TCGA-TT-ATTCAGCAAG--TA---TA-TT-GCT-----A----AAATTCTAAC-TACGAGATTTCTTCA-AACGAT-TTTTTC---AGTTTTG---AA----TTTGG-TCAT-CTTCTGGCA-ATTAT-------TTGAGAACCTAATCA-TAGT--G-CGT-AAC-AATCT-AGTAC-GTTTGGGTGATCAAGTA--AAACAA-TAAGAG-----GTAGTGAA-TACAGTTTCCTGTAGCAT--TGGA-G-ATT--CCTTACTTTT-CAA-TGATCTG-AT---ACAGTGATTA-CTGATAGACGGGCCGCCCA-TTTTT-GAGATGA-GGCCATATTTAATT--------------------TATTAC-----AA--------A---------TTGT-AATCATAAG-AGCTTTTTAA-T-------TAA--CC--CAGTAGAT-AATTGT---------ATAAAATTA-TTGAA-ACTATG-GCATT-AAAACAGTG------------AT-GC--T-TC-ATGCAAA-AA-GCATAATAACT-ATACA-T-----A----T-----------------------------------GG--C--------AGCCAT--T------TTGAAA-ATG-G-C-AGC-CATA----TTGAATTT-T---------------ACTcaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaactttttgttcgtgtgcttaagctggtcttgccttttggatcttttttttattatcaattttgattcgatttatttattacctgttatcttggaacctgacccatcctcgttgggacgcaggtatttttctgtcaggcaagattctgaatcactattcctttactgaagttattgttttgaccatcgggtctgtcgattattcagcaagtatattgctaaaattctaactacgagatttcttcaaacgattttttcagttttgaatttggtcatcttctggcaattatttgagaacctaatcatagtgcgtaacaatctagtacgtttgggtgatcaagtaaaacaataagaggtagtgaatacagtttcctgtagcattggagattccttacttttcaatgatctgatacagtgattactgatagacgggccgcccatttttgagatgaggccatatttaatttattacaaattgtaatcataagagctttttaattaacccagtagataattgtataaaattattgaaactatggcattaaaacagtgatgcttcatgcaaaaagcataataactatacatatggcagccattttgaaaatggcagccatattgaattttact
gi|5 : actgggtaaagagagaagagctttgtttcaatgatgcaatcttttgtgttctaggttgttgacaactaaatataacgtgctttctttgcttaatgggttcgtaaatagattttgaattacatgtactttcaatcagtctgtatttacagcgtggtgagattgctgttttcgaattttttccattcctatctgtatcgatattcttgttctcagatgaacaattcttcgtcttctgttccaagaaggattatatctctacattttcttgttttgaaattgtgtgtgtgtttaatagttggaactt---T---TTTTTTTTTGTGTTTTTT----ATCAATTCTTGATACGA-ATTT--ATTTATCCT-CGCAAG-TA-TTC-TGGAC--CCG-TCACCCCTCCATCGTTGCAGCAGAGTAATATTCTCTGTCAGG--CA-GATTCT-----A-CCA--TCTCCTTTT-TACT-A-AGTCA-TTGCCTTTGTTCACCAGGGTCTGATCTAGTT-A-----CAAG--TA--ATA-TC-GCTGCTCGG----AGATTCTA-CTTATGAG-TTTCTTCACAACGAT-TTTTCC---A-TTCTG---AAAT-TTCTGGTTCAT-CTTTTGGTACATTACAGGTTAGTTTGAAACCTAAT-----------------C-A-TCT-AGTATAGTTT-GGTGATCAAGCATCAAACAAAT-AAGGAATAAGAAGTGAAATACA-TTTT-TGTACAAT--TGAACATATTGGCCTT--CTTTCCAATTGATCTGTATG--ACAGTGAT-ATCTACTA-AC-GGC-GCC-A-TTTTAAGAGATGACAGCCATATCT-AAT--------------------T-TTAC-----AATGTCTTTTAACT------CCTT-AATCATAAG-AGCTTTCTAAGTA-------AGTCCCACC---AGGT----------------------TT--TTGAA-CCAATAGGCATTGAAAATAGTGATGCTTATATC-AT-GC--TATC-AAACAAACAA-GC-AAACA--T-ATACATT-----G----T----ATCC-ATGTTCCACTAC-------T------GG--C--------GGCCAT--T------TTGAAA-ATGTG-G-TGC-CATA----TTGAATTT-T---------------ACTCATTTCAA-T-TA-TTA--GAGCT-TTCCAAA-ATA-AC--CACCA-TA-T-------ATTAATCGGA-GGAA--T----A-TTTT------AAAGTGCTA-GCATTG--AAAATAG----TGATG-C-TATTTAACAAAA--ACA-ATG--G-AAACA--TAT-----GCC-ATA--ATCG-CGGCCA----TT--TTG--AAATG-GCGGTCTCATAT-TGAATTTT-GCGA-GTGGG-TCC--AT-ATCTAATA-TTGAT-TAGTAG----CA------AACCTAT----CCATC--CA--CCAAA-TTT--G-GT-G-TTT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------T-T---------CAC--CAATCAGCC
gi|6 : ttgTTCCAATATCTT-T--TATCCATTC-TAGC-TGCATCAGTCTCTTatgagatctattag
gi|7 : atttttgaacaactacttgttcccttctacttgccaaaaagcttcccaatggcctgaaactttagaatctggtaaaacaatctttcttctcagaccctttcctcttctagatttttccaatgttttcaggctgtctgaaaaatacttgctccaaattataccaactcgtctgacactatcttcaaacgtcttaacacccccccccttttttttttgtcttcagcatgttgataaagacaacaccatcaatggcaaaagtatcaactttcggagcctcgcaacttaattaatattcagaaatattttgtagcaaaacaagacccgatttttattcatgccattaatcacaaaattgtcattgagattatggatatgcttagttgtcatgtttataaaaacgtcataagatcaccatttcgaacttgacgtgaaacatgtaactgagaaaagagagaagagctttgtttcaatgacgcaatctgttgtgttctaggttgttgacaactaaatacaacttgcttgttttgcttactgggttcgtatatagactttgaactactttcaatcagtctgctacaagctggtgaaattgctgttTCTGTGAAG--TC-GATTTT-----A-CCA--TCTTCTTTC--ACT-A-AGTCA-TTG-TTCTGCTCAT--GGATCTGATGTA-TT-A-----CATG--TA--CTA-TC-GCT-----G----AAAATCTA-C-CGTAAGATTTCTTCACAACGAT-TTTTTC---A-TTCTG---AAAC-TTCTGG-TCAT-CTTCCGGCATATTAT-------TTTGAAGCGTATTCA-TATC--GTC-TAAAC-A-ATT-AGTATAGTTTGGATGATCAAGCG-CAATAAAAT----GAATAAAAAGTGAAATACAATTT--TGTACAAT--TATA-A-ATT-GTCCT--ACTT-CAA-TGTTCTG-ATG-AACAGTGAT-A-GTACTA-ACGGGT-GCT-C-TTTTAAGAGATGATGGCCATATT--GATTTTTTTTTTTTTTTTTTTTTT-TTAC-----AA--------A---------TTTT-GATTATTAG-AGCTTTCTAAG--------TAA--GCACCA-TAGATCAATTGT---------ATAA---------------GTA-GT----AAAATAGCG------------AT-GC--TATG-ATACAAACAA-GCAAAACA--T-A----------------T----A-CC-A--------TAT--------------GA--C--------GACCAT--T------TTGAAA-ATG-G-T-GGC-CATA----TTGAATTC-TGAGAGTTGGTCCATAGCTAACATTGA-T-CA-GTA--GA-CT-T----AG-ATATAC--CACCA-CA-act
gi|7 : ttacatgtaTTT-T---------------ACAAATTTTGA-T-TA-TTA--GAGCT-TT-CTAA-GTA-AG--CACCA-TA-G-------ATCAATT-G--------T----A-T---------AAG----TA-GT------AAAATAG----CGATG-C-TATGATAC--AA--ACA-A-G--CAAAACA--TAT-----ACC-AT---ATGA-CGACCA----TT--TTG-AAAATG-GTGG--CCATAT-TGAATTCT-GAGA-GTTGG-TCC--AT-AGCTAACA-TTGAT-CAGTAGA---CT------TAGATAT--A-CCACC-ACA--CCAAA---T--CGGT-G-CTT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------TGT---------CAC--CAATCAGCCGAAGTAccaaatcggtgctttcctcatcaagtgagcaatttttgtcaccaatcagccgaagta
gi|8 : ttacatgtatctgtgaagtcgattttaccatcttctttcactaagtcattgttctgctcatggatctgatgtattacatgtactatcgctgaaaatctaccgtaagatttcttcacaacgattttttcattctgaaacttctggtcatcttccggcatattattttgaagcgtattcatatcgtctaaacaattagtatagtttggatgatcaagcgcaataaaatgaataaaaagtgaaatacaattttgtacaattataaattgtcctacttcaatgttctgatgaacagtgatagtactaacgggtgctcttttaagagatgatggccatattgatttttttttttttttttttt------TTGAAA-GTG-G-C-AGC-CATA----TTGAATTT-T---------------ACTAATTTCCAGT-TA-TTAAGAAACT-TT-CAAA-ATA-AC--CACTA-TAGT-------ATTAATC-GA--GAATTT----A-TTTTG-----AA-GTGCTA-GCATTG--AAAATAG----TTTAG-CATATTT-AC--AA--ACAGATG--G--AACA--TAT-----G-C-ATGTCATCG-CGGCCA----TT--TTG--AAATG-GGGG--CCA-ATATGAATTTT-GCGATGTGGG-TCC--AT-AGATAATA-TTGAT-TAGTAGAC--CTTCAGGCTAAAAGT--A-CCACC-ACA--CCAAGATTT--G-GT-G--TT-TC---C-TC-ATC-AAGTGA------GCAATTTT----------T-T---------CACATC-ATCAGCCGGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATCTATAACAAATACATCAACTTTCGGAGCTGCTTGACTACTTTTCTCTAGCTGCACACCGGCAAGGCCGTAATGCCATATATTGTGATAGGAAAATGGATAAACTTGTTAATTAGCCATGTTTGACACCCCATAATATCACCATTTTGAACTTGGCATTAAACGTGTAACATTGACGAAATATCCATTGATTCGGTTTTAGGTTGTTGACGACTTAAACAAAAAGAGCTTGTTT