lowQualScore : 11111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111
lowQualScore : 1 4444444444 22222222222 333333 11 44444444444444444 4444444444444444444444444444444444444444444444444444444444 1 2 2 1 22222222222222222222222222222222222222222222222222222222222222222222222 22222 1 1111 1 777777777777777777 22 11 1 9999999
lowQualScore : 5 6666666666 5 1 3 4 3 7777 99999999999 9 3 3 222222 1 3 0 11 2 2 5 33 66666666666666666 22 5 0 33 9999 4 7777777777777777777777777777777777777777777777777777777777 4 0 777 4 77 8 5 0 0 7 33333333333333333333333333333333333333333333333333333333333333333333333 11111 6 6 5 7777 1 5 222222222222222222 3 5 33 66 8 2 6 8 7777777 2
lowQualScore : . .......... . . . . . .... ........... . . . ...... . . . .. . . . .. ................. .. . . .. .... . .......................................................... . . ... . .. . . . . . ....................................................................... ..... . . . .... . . .................. . . .. .. . . . . ....... .
lowQualScore : 0 6666666666 0 4 2 4 6 7777 44444444444 1 3 3 111111 0 3 8 22 7 4 2 99 55555555555555555 99 4 1 99 6666 9 8888888888888888888888888888888888888888888888888888888888 4 1 888 4 00 0 0 0 0 0 22222222222222222222222222222222222222222222222222222222222222222222222 66666 0 0 2 0000 8 0 444444444444444444 0 0 00 22 8 5 5 2 5555555 2
consensus : NNNNNNTTGTATTCGGCGCGC-TGCGCGTCCG-CGCGCCAC-AA-TTT----TT--G---A--N-GAAAATGTATCG-C-TT------ATTTTCAA-TCGTGC-TAT-CGAGCTCGATTATTTC--ACCAG----------C--GAAGTC-GCACGTGGTGAGGG--TCACAACAG---GGGTAAATTCTAATT-CAACAGGTAC--T--GGG-GCATG----AATCACGT-AATAATAC-C---CC-CCC---CCCCAAC-CTTACTCATTTT-CTGATCTGGGATCTACACATTTTTTAAAAAGTGTGATTGGAAAATACTCTATCCAATTAAATATTCTAANTAGAAACN---ATGATCACGA------GA--TTT--TA------TTT----AAACTTATCTACAGCGA----ATTTTACAAAACATAATTNAA-------------TAAAAAAGTGAGACTGGGCATTGCATAGTA-CATGTCCNAAGGCATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
Reference ( gi|1 ) : AGGTGATTGTATTGGGCGCGCATGTGCGTTCG-CGCGCCAC-AA-TTT----TT--G---A--T-GAAAATTTATCG-C-TT------ATTTTCAA-TCGTGC-TAT-CGAGCTCGATTATTTC--ACCAGTA-GT-CTCAC-AGAAGTC-GCACGTGGTGAGGG--TCACAACAA---GGGTAAATTCTAATT-CAACAGGTAC--T--AGG-GCATG----AATCACGT-AATATTAC-C---CC-CCC---CCCCAAC-CTTACTTGTTTT-CTGATCTGGAATGTACACACTTTTT-AAA-GTATGATAGGAAAATATACTATCCAA----ATATTTTAAGTAGAAA-A---ATGGTCACGA------GA-------TA------TTT----GAA-TTACCTACAACGA----ATTTAACAAAACATAAGTAAAACAAATGAGTCGGTAAAAAAGTGGGGCTGGACATTACATAATC-CATGTCCTTAGACCTGAGGTTTAACTCGGATTCC-------CGGGGGAGGGT
gi|9 : TTATATTCCGCACGTATGTGCG---------CCAC-AA-TTT----TT--G---AGAT-GAAAATGTATCG-C-TT------ATTTTCAA-TCGTTC-TAT-CGAACTCGATTATTTC--GC-------------C-AAAACTC-GCACGTGGTGAGGG--TCACAATTA---GGGTAAATTCAAATT-CAACAGGTAC--T--TGGTGCATG----AGT
gi|13 : agTTGTATTTGGCGCGCCTG---------CGCGTAAC-AA-T--------------------AAAATTCATTG-C-TT------ATTTTGAA-TCATACATGT-CAGGCTTGAT-ATTTC--GCCAG--------------AAGTT-GCACATGGTGGGGG--T
gi|19 : tagTTGTATTCGGCGCG--------TCCG-CGCACC-C-AA----------------A--T--AAAATTTATCG-C-TT------ATTCCCA
gi|14 : agGCGTGTCCG-CGCGTC-T-GA-TTTAGTTCT--G---A--A-GAAAATGTATCG-C-TT------ATTTCAAA-CCGTA------CG----TGA-----TC--ACC--T------------GAAGTC-GCACGTGGTGATAA--TTACAA
gi|2 : attcgTCCG-AGCGCCAC-AA-TTT----TTTGA---A--A-GAAAATGTATCG-C-TTTATTTAATTTTCAA-TCGTGC-TAT-TGAGTTCGATTATTTC--ACCAG---------AC-----GTG-GGACGTGGTGAGGG--TCACAACAG---GGATAAAT-------------GGTAC--TTGGGG-GCATG----AATCACGT-AATAACAC-C---CC-CCC---CCCCAAC-CTTACT
gi|3 : atTCCG-AGCGCCAC-AA-TTT----TTT-G---A--A-AGAAATGTATCG-C-TTTATTTAATTTTCAA-TCGTGC-TAT-TGAGTTCGATTATTTC--ACCAG---------AC-----GTG-G-ACGTGGTGAGG---TCACAACAG---GGATAAAT-------------GGTAC--TTGGGG-GCATG----AATCACGT-AA-A-TACAC---CC-CCC---CCCCAAC-CTTACcatacacgttgatgatcacgatattttaatatttttttaaattatctacagcgaattttacaaaacataatttaaaaaagtgagactgggcattgcatagtacatgtccaaagacatgaggtataacttggattcccccgcctcggggggggg
gi|17 : tTTCGGCGCGCCAC-AA-TTT----TT--TTTTA--T-GGAAATTTATCG-C-TT------ATTTTCAA-TCGGGC-TAT-catacacgttgatgatacgatattttaatattttttaaacttatctacagcgaattttacaaaacataatttaaaaaaagtgagactgggcattgcatagtaacatgtccaaagacatgaggtataacttggattcccccgcctcggggggggg
gi|11 : gttataG-CGC-CCACTAACTTT----TT--G---AG-T-GAAAGT--ATCG-CTTT------ATTTT-AA-TCGTTC-TAT-CATAC-CGATTA-TTC--GCCA---------------AACT--GCACGT-GTG-GGG--T-ACGA-AATTCGGCT--ATTCAAGTTCCAACAGGTAC--T--TGGTGCATG----A
gi|4 : C-AA-TTT----TT--G---A--A-AGAAATGTATCG-C-TTTATTTAATTTTCAA-TCGTGC--AT-TGAGTTCGATTATTTC--ACCAG---------AC-----GTG-G-ACGTGGTGA-GG--TCACAAC-G---GGATAAAT--------------GTACT-T--GGG-GGATG----AATCACGTAAATA-AAA-C---CC-CCC---CCCCAAC-CTTACTg
gi|8 : -TTC----TT--G---A--GAGAAAATGTAACG-C-TT------ATTTTTAA-TCGTACATAC-CGGGTTCGA-TATTTC---CCG-------------AGAAGTC-GCACATGG-GAGGG--TCACAACAG---GG--------TAATC-CAATACGCTC--T--TGG----------------GT-AAAAT-----------CTC---CCCCAA--CTTAATTATTTT-CTGATCTGGGATCTACATATTTTTcatacacttgatgatcacatattttaatattttttaaacttatctacagcgaattttacaaaacataatttaattaaaaagtgagactgggcattgcatagtacatgtcccaaagaatgaggtataacttggattcccccgcctcggggggggg
gi|7 : gtcagtttat-TTC----TT--G---A--GAGAAAATGTAACGGC-TTG-----ATTTTTAAATCGTAC--ATACGGGTTCGAATATTTC--AC--G------------AGAAGTCGGCACATGG-GAGGGGTCCACAACAG---G---------TAATT-CCATACGCTC--T--GGG-GTA-A----AA-------AAT-----------C-TGG---CCCCAATGCTTAATTATTTTACTGATCTGGGATCTACATATTT
gi|15 : atAAATTTATCG-C-TT------ATTTCCAA-TCGTACGTAT-TGGGCTTGA-TATTTC--AC-------------C-AGAAGTC-GCAAGGGGTGGGGG--TCACAACg
gi|18 : agttgtattcgcccaaattA-TCACG--TAT-CGAACTTGAT-ATTTC--ACCAAAA-G---TCAC------TC-G---GTG--GAGGG--TTACAA
gi|12 : ccAT-CGAGCTCGATTATTTC--ACCAG--------------AAGTC-GTACGTGGTGACGG--TCACAACAG---TGATAAACTCTAA-----------------------------------ACGC-AATAATAC-C---CCACCCTAACCCCAAC-CTTACTCATTTT-CTGATCTGGAATCTACACATTTT
gi|10 : -CGAGCTCGATTATTTC--ACCAG--------------AAGTC-GAACATGATGAGGG--TCACAACAG---GGGTAAATTTTAATT-CAACAGGTACTTT--GGG-GCATGATCAAATCACGT-AATAATACACACACA-CAC---CCCCAAC-CTTACTCATTT
gi|16 : -CGCGCCCAAATATTTCCAATC-GTACGTATTCACCAGGTGTC-GCACGTGGTG-GGG--TCACAACAG---GGG-AAATTTTGGTT-
gi|5 : acgctaattgtattccgCACAACAG---GGGTAAATTCTAATT-CAACAGG-AC--C---------TG----AATCACTT-AATAATAC-T---CC-CAC---CCC-AAC-CTTACTCACTTT-CTGATCTGGAATTTACACACTTTTT-AAAAGTATGATTGGAAAATACTCTATCCAATTAAATATTT-AAGTAGAAACATGCATGATCACGA------GAAGTTTACTAACT---TTT----CAA-TTATCTACATCGA----ATTTTACAAAACATTAGTAAATGAAATGAGCCAGAAGAAAAGTGGGGCTGAACAATA-ACAAT---ATGCACTTA
gi|6 : gtcaaacacca---CC-CCC---TCCCAAC-CTTACCCATTTT-CTGATCTGGGTTCTACACACTTTTTAAAA-GTGTGATTGGAAA-------------------ATTCTAATTAGAAA-C---ATGATCACGA------GATTTTT--TACTAATTTTT----GAA-ATATCTATCATGAAAGTATTTAACGAAA---GAGTAA---------------AAAAAGGCGGGGCTTGGCATTAAATTATC-CATGTCCTAAGGCCT------------GGACTCT-------CGGGGGAGG
gi|2 : a---ATGATCACGATATTTTAA-------TA------TTTTTTTAAA-TTATCTACAGCGA----ATTTTACAAAACATAATT----------------TAAAAAAGTGAGACTGGGCATTGCATAGTA-CATGTCCAAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGtct
gi|3 : attccgagcgccacaattttttgaaagaaaatgtatcgctttatttaattttcaatcgtgctattgagttcgattatttcaccagacgtgggacgtggtgagggtcacaacagggataaatggtacttgggggcatgaatcacgtaataacacccccccccccaaccttactcatacacgttg------TTT----AAACTTATCTACAGCGA----ATTTTACAAAACATAATTTAAA---------------AAAAGTGAGACTGGGCATTGCATAGTAACATGTCCAAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
gi|4 : ttccgagcgccacaattttttgaaagaaatgtatcgctttatttaattttcaatcgtgctattgagttcgattatttcaccagacgtggacgtggtgaggtcacaacagggataaatggtacttgggggcatgaatcacgtaaatacaccccccccccaaccttaccatacacgttgatgatacgatattttaatattt------TTT----AAACTTATCTACAGCGA----ATTTTACAAAACATAATTTAA-------------TTAAAAAGTGAGACTGGGCATTGCATAGTA-CATGTCCCAAAGAATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
Alignments
lowQualScore : 3333333 2222222222 222222 1 444444444444 111111111111 222222 1111111 22222 1 44444444444444444 1 44444 88888888888888888 111 2 1111 55555555555555555555
lowQualScore : 3 5555555 1 4 3 7777 4444444444 3 3 777777 2 0 4 1 7 666666666666 6 2 2 33 44 3 666666666666 0 111111 0 7777 4 2 3333333 4 777 4 88888 4 4 3 1 3 0 33333333333333333 2 1 44444 2 99 66666666666666666 111 3 4444 6 11111111111111111111 88 1 0 2
lowQualScore : . ....... . . . .... .......... . . ...... . . . . . ............ . . . .. .. . ............ . ...... . .... . . ....... . ... . ..... . . . . . . ................. . . ..... . .. ................. ... . .... . .................... .. . . .
lowQualScore : 7 1111111 9 0 3 1111 3333333333 1 1 555555 9 4 3 6 4 666666666666 1 7 7 77 66 7 888888888888 4 000000 5 7777 4 0 4444444 0 000 0 55555 4 4 7 7 2 7 00000000000000000 0 0 00000 5 22 00000000000000000 777 3 2222 7 77777777777777777777 66 0 6 5
consensus : NNNNNNTTGTATTCGGCGCGC-CGCGCGTCCGCGCGCCAC-AA-TTT----TT--G---AG--GAAAATGTATCG-C-TT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAG----------GAAGTCG-CACGTGGT-GAGGG--TCACAACA--GGGGTAAATTCTAATT-CAACAGGTAC--T--GGGGCATG----AATCACGT-AATAATAC-C---CC-CCC---CCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGNATCTACACATTTTTTAAAAAGTATGATTGGAAAATAC-CTATCCAA----ATATTCTAAGTAGAAAC----ATGATCACGANA--TTT--T------AATATTT-TTT---AAA-TTATCTACAGCGA----ATTTTACAAAACA-TAATT-AA-------------TAAAAAAGTGAGACTGGGCATTGCATAGTA-CATGTCCNAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
Reference ( family-1472 ) : NNNNNNTTGTATTCGGCGCGC-TGCGCGTCCGCGCGCCAC-AA-TTT----TT--G---AN--GAAAATGTATCG-C-TT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAGC---------GAAGTCG-CACGTGGT-GAGGG--TCACAACA--GGGGTAAATTCTAATT-CAACAGGTAC--T--GGGGCATG----AATCACGT-AATAATAC-C---CC-CCC---CCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGGATCTACACATTTTTTAAAAAGTGTGATTGGAAAATACTCTATCCAATTAAATATTCTAANTAGAAAC---NATGATCACGAGA--TTT--T------A-------TTT---AAACTTATCTACAGCGA----ATTTTACAAAACA-TAATTNAA-------------TAAAAAAGTGAGACTGGGCATTGCATAGTA-CATGTCCNAAGGCATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
gi|1 : TTGTATTGGGCGCGCATGTGCGTTCGCGCGCCAC-AA-TTT----TT--G---AT--GAAAATTTATCG-C-TT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAGTAGTCTCACAGAAGTCG-CACGTGGT-GAGGG--TCACAACA--AGGGTAAATTCTAATT-CAACAGGTAC--T--AGGGCATG----AATCACGT-AATATTAC-C---CC-CCC---CCCCAAC-CTTACTTGT-----TTT-CTGATC-TGGAATGTACACACTTTTTAAA--GTATGATAGGAAAATATACTATCCAA----ATATTTTAAGTAGAAA----AATGGTCACGAGA--T-----------A-------TTT---GAA-TTACCTACAACGA----ATTTAACAAAACA-TAAGTAAAACAAATGAGTCGGTAAAAAAGTGGGGCTGGACATTACATAATC-CATGTCCTTAGACCTGAGGTTTAACTCGGATTCC-------CGGGGGAGGG
gi|10 : aggtgaCGAGCTCGATTATTTCACCAG-----------AAGTCG-AACATGAT-GAGGG--TCACAACA--GGGGTAAATTTTAATT-CAACAGGTACTTT--GGGGCATGATCAAATCACGT-AATAATACACACACA-CAC---CCCCAAC-CTTACTCAT-----TTt
gi|11 : GCGC-CCACTAACTTT----TT--G---AGT-GAAA--GTATCG-CTTT------ATTTT-AA-TCGTTC-TATCATAC-CGATTA-TTCGCCA------------AACT-G-CACGT-GT-G-GGG--T-ACGAAATTCGGCT--ATTCAAGTTCCAACAGGTACT-T--GGTGCATG----A
gi|12 : ATCGAGCTCGATTATTTCACCAG-----------AAGTCG-TACGTGGT-GACGG--TCACAACA--GTGATAAACTCTAA----------------------------------ACGC-AATAATAC-C---CCACCCTAACCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGAATCTACACATTTTg
gi|13 : TTGTATTTGGCGCGC--------CTGCGCGTAAC-AA-T-------------------AAAATTCATTG-C-TT------ATTTTGAA-TCATACATGTCAGGCTTGA-TATTTCGCCA-----------GAAGTTG-CACATGGT-GGGGG--T
gi|14 : tagGCGTGTCCGCGCGTC-T-GA-TTTAGTTCT--G---AA--GAAAATGTATCG-C-TT------ATTTCAAA-CCGTA-----CG----TGA-----TCACC--T---------GAAGTCG-CACGTGGT-GATAA--TTACAA
gi|15 : attcgAAATTTATCG-C-TT------ATTTCCAA-TCGTACGTATTGGGCTTGA-TATTTCACCA-----------GAAGTCG-CAAGGGGT-GGGGG--TCACAAC
gi|16 : agttgtattcgcccaaattT------ATTTCCAA-TCGTACGTAT--------------TCACCAG-----------GTGTCG-CACGTGGT-G-GGG--TCACAACA--GGGG-AAATTTTGGTT-
gi|17 : acgctaattgtattccgcgcgcccaaaTCGGCGCGCCAC-AA-TTT----TT--TTTTAT--GGAAATTTATCG-C-TT------ATTTTCAA-TCGGGC-TAT
gi|18 : gttatatA-TCACG--TATCGAACTTGAT-ATTTCACCA-----------AAAGT---CACTCGGTGGAGGG--TTACAA
gi|19 : ccTTGTATTCGGCGCG--------TCCGCGCACC-C-AA-AT------------------AAAATTTATCG-C-TT------ATTCCCA
gi|2 : agTCCGAGCGCCAC-AA-TTT----TTTGA---AA--GAAAATGTATCG-C-TTTATTTAATTTTCAA-TCGTGC-TATTGAGTTCGATTATTTCACCAG-----------ACGTGG-GACGTGGT-GAGGG--TCACAACA--GGGATAAAT-------------GGTAC--TTGGGGGCATG----AATCACGT-AATAACAC-C---CC-CCC---CCCCAAC-CTTACTCATACACGTTG-ATGATCACGATATTTTAATATTTTTTTAAA
gi|2 : atATGATCACGATA--TTT--T------AATATTTTTTT---AAA-TTATCTACAGCGA----ATTTTACAAAACA-TAATT----------------TAAAAAAGTGAGACTGGGCATTGCATAGTA-CATGTCCAAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGttatctacagcgaattttacaaaacataatttaaaaaagtgagactgggcattgcatagtacatgtccaaagacatgaggtataacttggattcccccgcctcggggggggg
gi|3 : attccgagcgccacaattttttgaaagaaaatgtatcgctttatttaattttcaatcgtgctattgagttcgattatttcaccagacgtgggacgtggtgagggtcacaacagggataaatggtacttgggggcatgaatcacgtaataacacccccccccccaaccttactcatacacgttgTCCGAGCGCCAC-AA-TTT----TTT-G---AA--AGAAATGTATCG-C-TTTATTTAATTTTCAA-TCGTGC-TATTGAGTTCGATTATTTCACCA-----------GACGT-G-GACGTGGT-GA-GG--TCACAACA--GGGATAAAT-------------GGTAC--TTGGGGGCATG----AATCACGT-A--AATACAC---CC-CCC---CCCCAAC-CTTAC-CATACACGTTG-ATGATA-CGATATTTTAATATTTTTTAAA
gi|3 : tATGAT-ACGATA--TTT--T------AATATTT-TTT---AAACTTATCTACAGCGA----ATTTTACAAAACA-TAATTTAA---------------AAAAAGTGAGACTGGGCATTGCATAGTAACATGTCCAAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGcttatctacagcgaattttacaaaacataatttaaaaaaagtgagactgggcattgcatagtaacatgtccaaagacatgaggtataacttggattcccccgcctcggggggggg
gi|4 : ttccgagcgccacaattttttgaaagaaatgtatcgctttatttaattttcaatcgtgctattgagttcgattatttcaccagacgtggacgtggtgaggtcacaacagggataaatggtacttgggggcatgaatcacgtaaatacaccccccccccaaccttaccatacacgttgC-AA-TTT----TT--G---AA--AGAAATGTATCG-C-TTTATTTAATTTTCAA-TCGTGC--ATTGAGTTCGATTATTTCACCA-----------GACGT-G-GACGTGGT-GA-GG--TCACAAC---GGGATAAAT--------------GTACT-T--GGGGGATG----AATCACGTAAATAA-AA-C---CC-CCC---CCCCAAC-CTTACTCATACAC-TTG-ATGATC-ACATATTTTAATATTTTTTAAA
gi|4 : ATGATCAC-ATA--TTT--T------AATATTT-TTT---AAACTTATCTACAGCGA----ATTTTACAAAACA-TAATTTAA-------------TTAAAAAGTGAGACTGGGCATTGCATAGTA-CATGTCCCAAAGAATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGcttatctacagcgaattttacaaaacataatttaattaaaaagtgagactgggcattgcatagtacatgtcccaaagaatgaggtataacttggattcccccgcctcggggggggg
gi|5 : caatttttgaaagaaatgtatcgctttatttaattttcaatcgtgcattgagttcgattatttcaccagacgtggacgtggtgaggtcacaacgggataaatgtacttgggggatgaatcacgtaaataaaaccccccccccaaccttactcatacacttgCACAACA--GGGGTAAATTCTAATT-CAACAGG-AC--C--------TG----AATCACTT-AATAATAC-T---CC-CAC---CCC-AAC-CTTACTCAC-----TTT-CTGATC-TGGAATTTACACACTTTTT-AAAAGTATGATTGGAAAATACTCTATCCAATTAAATATT-TAAGTAGAAACATGCATGATCACGAGAAGTTTACT------AACT----TTT---CAA-TTATCTACATCGA----ATTTTACAAAACA-TTAGTAAA-------------TGAAA---TGAG
gi|6 : gtcaaacacca---CC-CCC---TCCCAAC-CTTACCCAT-----TTT-CTGATC-TGGGTTCTACACACTTTTT-AAAAGTGTGATTGGAAA-------------------ATTCTAATTAGAAAC----ATGATCACGAGA--TTT--TTTACTAA-------TTTTTGAAA--TATCTATCATGAAAGTATTTAACGAAAGAGTAA-------------------AAAAAGGCGGGGCTTGGCATTAAATTATC-CATGTCCTAAGGCCTGccagaagaaaagtggggctgaacaataacaatatgcactta
gi|7 : a-TTC----TT--G---AGA-GAAAATGTAACGGC-TTG-----ATTTTTAAATCGTACATA-CGGGTTCGAATATTTCAC--GA---------GAAGTCGGCACATGG--GAGGGGTCCACAACA--GG---------TAATT-CCATACGCTC--T--GGGGTA---------------AAAAAT--------C-TGG---CCCCAATGCTTAATTAT-----TTTACTGATC-TGGGATCTACATATTTgactctcgggggaggtct
gi|8 : at-TTC----TT--G---AGA-GAAAATGTAACG-C-TT------ATTTTTAA-TCGTACATACCGGGTTCGA-TATTTC-CC-GA---------GAAGTCG-CACATGG--GAGGG--TCACAACA--GGG--------TAATC-CAATACGCTC--T--TGG---------------GT-AA-AAT----------CTC---CCCCAA--CTTAATTAT-----TTT-CTGATC-TGGGATCTACATATTTTTg
gi|9 : gtcagtttatC-CGCACGTATGTGCGCCAC-AA-TTT----TT--G---AGATGAAAATGTATCG-C-TT------ATTTTCAA-TCGTTC-TATCGAACTCGATTATTTCGCCA-----------AAACTCG-CACGTGGT-GAGGG--TCACAATT--AGGGTAAATTCAAATT-CAACAGGTACT-T--GGTGCATG----AGT
Alignments
lowQualScore : 2222222 2222222222 222222 1 333333333333 111111111111 222222 1111111 22222 1 555555555555555 1 2222 1 1111 555555555555555555
lowQualScore : 0 5555555 2 0 4 3 7777 4444444444 3 3 777777 2 0 4 1 7 444444444444 88 2 33 44 3 666666666666 0 111111 0 7777 4 2 3333333 4 777 4 88888 4 4 1 1 3 666666666666666 2 8888 77 99 3 6 3 4444 3 444444444444444444 6 88 1 0 2
lowQualScore : . ....... . . . . .... .......... . . ...... . . . . . ............ .. . .. .. . ............ . ...... . .... . . ....... . ... . ..... . . . . . ............... . .... .. .. . . . .... . .................. . .. . . .
lowQualScore : 2 6666666 9 1 0 3 1111 6666666666 1 1 555555 9 4 3 6 4 999999999999 77 7 77 66 7 888888888888 4 000000 5 7777 4 0 4444444 0 000 0 55555 4 4 0 7 2 000000000000000 0 3333 77 22 0 7 3 2222 2 222222222222222222 7 66 0 6 5
consensus : NNNNNNTTGTATTCGGCGCG-C-CGCGCGTCCGCGCGCCAC-AA-T----TTTT--G---AG--GAAAATGTATCG-C-TT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAG----------GAAGTC-GCACGTGGT-GAGGG--TCACAACA--GGGGTAAATTCTAATT-CAACAGGTAC--T--GGGGCATG----AATCACGT-AATAATAC-C---CC-CCC---CCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGNATCTACACATTTTTTAAAAAGTATGATTGGAAAATAC-CTATCC----AAATATTCTAAGTAGAAA----CATGATCACGA-NA--TTTTAATATTTTTT-AAA-TTATCTACAGCGA----ATTTTACAAAACATAATT-AA--------------TAAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCNAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
Reference ( family-1472 ) : NNNNNNTTGTATTCGGCGCG-C-CGCGCGTCCGCGCGCCAC-AA-T----TTTT--G---AG--GAAAATGTATCG-C-TT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAG----------GAAGTC-GCACGTGGT-GAGGG--TCACAACA--GGGGTAAATTCTAATT-CAACAGGTAC--T--GGGGCATG----AATCACGT-AATAATAC-C---CC-CCC---CCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGNATCTACACATTTTTTAAAAAGTATGATTGGAAAATAC-CTATCC----AAATATTCTAAGTAGAAA----CATGATCACGA-NA--TTTTAATATTTTTT-AAA-TTATCTACAGCGA----ATTTTACAAAACATAATT-AA--------------TAAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCNAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
gi|1 : TTGTATTGGGCGCG-CATGTGCGTTCGCGCGCCAC-AA-T----TTTT--G---AT--GAAAATTTATCG-C-TT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAGTAGTCTCACAGAAGTC-GCACGTGGT-GAGGG--TCACAACA--AGGGTAAATTCTAATT-CAACAGGTAC--T--AGGGCATG----AATCACGT-AATATTAC-C---CC-CCC---CCCCAAC-CTTACTTGT-----TTT-CTGATC-TGGAATGTACACACTTTTTAAA--GTATGATAGGAAAATATACTATCC----AAATATTTTAAGTAGAAA----AATGGTCACGA-GA--T------ATTT----GAA-TTACCTACAACGA----ATTTAACAAAACATAAGT-AAAACAAATGAGTCGGTAAA-AAAGTGGGGCTGGACATTACATAAT-CCATGTCCTTAGACCTGAGGTTTAACTCGGATTCC-------CGGGGGAGGG
gi|10 : aggtgaCGAGCTCGATTATTTCACCAG-----------AAGTC-GAACATGAT-GAGGG--TCACAACA--GGGGTAAATTTTAATT-CAACAGGTACTTT--GGGGCATGATCAAATCACGT-AATAATACACACACA-CAC---CCCCAAC-CTTACTCAT-----TTt
gi|11 : GCGC-CCACTAACT----TTTT--G---AGT-GAAA--GTATCG-CTTT------ATTTT-AA-TCGTTC-TATCATAC-CGATTA-TTCGCCA------------AACT--GCACGT-GT-G-GGG--T-ACGAAATTCGGCT--ATTCAAGTTCCAACAGGTACT-T--GGTGCATG----A
gi|12 : ATCGAGCTCGATTATTTCACCAG-----------AAGTC-GTACGTGGT-GACGG--TCACAACA--GTGATAAACTCTAA----------------------------------ACGC-AATAATAC-C---CCACCCTAACCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGAATCTACACATTTTg
gi|13 : TTGTATTTGGCGCG-C-C-------TGCGCGTAAC-AA-T-------------------AAAATTCATTG-C-TT------ATTTTGAA-TCATACATGTCAGGCTTGA-TATTTCGCCA-----------GAAGTT-GCACATGGT-GGGGG--T
gi|14 : tagATTCGGCGTGTC-CGCGCGTCTG----------A-TTTAGTTCT--G---AA--GAAAATGTATCG-C-TT------ATTTCAAA-CCGTA-----CG----TGA-----TCACC-T----------GAAGTC-GCACGTGGT-GATAA--TTACAA
gi|15 : AAATTTATCG-C-TT------ATTTCCAA-TCGTACGTATTGGGCTTGA-TATTTCACCA-----------GAAGTC-GCAAGGGGT-GGGGG--TCACAAC
gi|16 : agttgtattcgcccaaattT------ATTTCCAA-TCGTACGTAT--------------TCACCAG----------GT-GTC-GCACGTGGT-G-GGG--TCACAACA--GGGG-AAATTTTGGTT-
gi|17 : acgctaattgtattccgcgcgcccaaaTCGGCGCGCCAC-AA-T----TTTT--TTTTAT--GGAAATTTATCG-C-TT------ATTTTCAA-TCGGGC-TAT
gi|18 : gttatatA-TCACG--TATCGAACTTGAT-ATTTCACCA-----------AAAGT---CACTCGGTGGAGGG--TTACAA
gi|19 : ccTTGTATTCGGCGCG---------TCCGCGCACC-C-AA-A----T--------------AAAATTTATCG-C-TT------ATTCCCA
gi|2 : agTCCGAGCGCCAC-AA-T----TTTTTGA---AA--GAAAATGTATCG-C-TTTATTTAATTTTCAA-TCGTGC-TATTGAGTTCGATTATTTCACCAG-----------ACGTG-GGACGTGGT-GAGGG--TCACAACA--GGGATAAAT-------------GGTAC--TTGGGGGCATG----AATCACGT-AATAACAC-C---CC-CCC---CCCCAAC-CTTACTCATACACGTTG-ATGATCACGATATTTTAATATTTTTTTAAA
gi|2 : atATGATCACGA-TA--TTTTAATATTTTTTTAAA-TTATCTACAGCGA----ATTTTACAAAACATAATT-----------------TAAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCAAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGttatctacagcgaattttacaaaacataatttaaaaaagtgagactgggcattgcatagtacatgtccaaagacatgaggtataacttggattcccccgcctcggggggggg
gi|3 : attccgagcgccacaattttttgaaagaaaatgtatcgctttatttaattttcaatcgtgctattgagttcgattatttcaccagacgtgggacgtggtgagggtcacaacagggataaatggtacttgggggcatgaatcacgtaataacacccccccccccaaccttactcatacacgttgTCCGAGCGCCAC-AA-T----TTTTT-G---AA--AGAAATGTATCG-C-TTTATTTAATTTTCAA-TCGTGC-TATTGAGTTCGATTATTTCACCA-----------GACGT--GGACGTGGT-GA-GG--TCACAACA--GGGATAAAT-------------GGTAC--TTGGGGGCATG----AATCACGT-A--AATACAC---CC-CCC---CCCCAAC-CTTAC-CATACACGTTG-ATGATA-CGATATTTTAATATTTTTTAAA
gi|3 : tATGAT-ACGA-TA--TTTTAATATTTTTT-AAACTTATCTACAGCGA----ATTTTACAAAACATAATT-TA---------------AAA-AAAGTGAGACTGGGCATTGCATAGTAACATGTCCAAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGcttatctacagcgaattttacaaaacataatttaaaaaaagtgagactgggcattgcatagtaacatgtccaaagacatgaggtataacttggattcccccgcctcggggggggg
gi|4 : ttccgagcgccacaattttttgaaagaaatgtatcgctttatttaattttcaatcgtgctattgagttcgattatttcaccagacgtggacgtggtgaggtcacaacagggataaatggtacttgggggcatgaatcacgtaaatacaccccccccccaaccttaccatacacgttgC-AA-T----TTTT--G---AA--AGAAATGTATCG-C-TTTATTTAATTTTCAA-TCGTGC--ATTGAGTTCGATTATTTCACCA-----------GACGT--GGACGTGGT-GA-GG--TCACAAC---GGGATAAAT--------------GTACT-T--GGGGGATG----AATCACGTAAATAA-AA-C---CC-CCC---CCCCAAC-CTTACTCATACAC-TTG-ATGATC-ACATATTTTAATATTTTTTAAA
gi|4 : ATGATCAC-A-TA--TTTTAATATTTTTT-AAACTTATCTACAGCGA----ATTTTACAAAACATAATTTAA--------------TTAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCCAAAGAATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGcttatctacagcgaattttacaaaacataatttaattaaaaagtgagactgggcattgcatagtacatgtcccaaagaatgaggtataacttggattcccccgcctcggggggggg
gi|5 : caatttttgaaagaaatgtatcgctttatttaattttcaatcgtgcattgagttcgattatttcaccagacgtggacgtggtgaggtcacaacgggataaatgtacttgggggatgaatcacgtaaataaaaccccccccccaaccttactcatacacttgCACAACA--GGGGTAAATTCTAATT-CAACAGG-AC--C--------TG----AATCACTT-AATAATAC-T---CC-CAC---CCC-AAC-CTTACTCAC-----TTT-CTGATC-TGGAATTTACACACTTTTT-AAAAGTATGATTGGAAAATACTCTATCCAATTAAATATT-TAAGTAGAAACATGCATGATCACGAGAA--GTTTACTAACTTTT-CAA-TTATCTACATCGA----ATTTTACAAAAC---ATT-AG--------------TAAATGAAATGAG
gi|6 : gtcaaacacca---CC-CCC---TCCCAAC-CTTACCCAT-----TTT-CTGATC-TGGGTTCTACACACTTTTT-AAAAGTGTGATTGGAAA-------------------ATTCTAATTAGAAA----CATGATCACGA-GATTTTTTACTAATTTTT-GAA-ATATCTATCATGAAAGTATTTAACGAAA---GAGT-AA---------------AAA-AAGGCGGGGCTTGGCATTAAATTAT-CCATGTCCTAAGGCCTGccagaagaaaagtggggctgaacaataacaatatgcactta
gi|7 : a-T----TCTT--G---AGA-GAAAATGTAACGGC-TTG-----ATTTTTAAATCGTACATA-CGGGTTCGAATATTTCACGA-----------GAAGTCGGCACATGG--GAGGGGTCCACAACA--GG---------TAATT-CCATACGCTC--T--GGGGTA---------------AAAAAT--------C-TGG---CCCCAATGCTTAATTAT-----TTTACTGATC-TGGGATCTACATATTTgactctcgggggaggtct
gi|8 : at-T----TCTT--G---AGA-GAAAATGTAACG-C-TT------ATTTTTAA-TCGTACATACCGGGTTCGA-TATTTC-CCGA----------GAAGTC-GCACATGG--GAGGG--TCACAACA--GGG--------TAATC-CAATACGCTC--T--TGG---------------GT-AA-AAT----------CTC---CCCCAA--CTTAATTAT-----TTT-CTGATC-TGGGATCTACATATTTTTg
gi|9 : gtcagtttat-C-CGCACGTATGTGCGCCAC-AA-T----TTTT--G---AGATGAAAATGTATCG-C-TT------ATTTTCAA-TCGTTC-TATCGAACTCGATTATTTCGCCA-----------AAACTC-GCACGTGGT-GAGGG--TCACAATT--AGGGTAAATTCAAATT-CAACAGGTACT-T--GGTGCATG----AGT
Alignments
lowQualScore : 2222222 2222222222 222222 1 333333333333 111111111111 222222 1111111 22222 1 555555555555555 1 2222 1 1111 555555555555555555
lowQualScore : 0 5555555 2 0 4 3 7777 4444444444 3 3 777777 2 0 4 1 7 444444444444 88 2 33 44 3 666666666666 0 111111 0 7777 4 2 3333333 4 777 4 88888 4 4 1 1 3 666666666666666 2 8888 77 99 3 6 3 4444 3 444444444444444444 6 88 1 0 2
lowQualScore : . ....... . . . . .... .......... . . ...... . . . . . ............ .. . .. .. . ............ . ...... . .... . . ....... . ... . ..... . . . . . ............... . .... .. .. . . . .... . .................. . .. . . .
lowQualScore : 2 6666666 9 1 0 3 1111 6666666666 1 1 555555 9 4 3 6 4 999999999999 77 7 77 66 7 888888888888 4 000000 5 7777 4 0 4444444 0 000 0 55555 4 4 0 7 2 000000000000000 0 3333 77 22 0 7 3 2222 2 222222222222222222 7 66 0 6 5
consensus : NNNNNNTTGTATTCGGCGCG-C-CGCGCGTCCGCGCGCCAC-AA-T----TTTT--G---AG--GAAAATGTATCG-C-TT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAG----------GAAGTC-GCACGTGGT-GAGGG--TCACAACA--GGGGTAAATTCTAATT-CAACAGGTAC--T--GGGGCATG----AATCACGT-AATAATAC-C---CC-CCC---CCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGNATCTACACATTTTTTAAAAAGTATGATTGGAAAATAC-CTATCC----AAATATTCTAAGTAGAAA----CATGATCACGA-NA--TTTTAATATTTTTT-AAA-TTATCTACAGCGA----ATTTTACAAAACATAATT-AA--------------TAAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCNAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
Reference ( family-1472 ) : NNNNNNTTGTATTCGGCGCG-C-CGCGCGTCCGCGCGCCAC-AA-T----TTTT--G---AG--GAAAATGTATCG-C-TT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAG----------GAAGTC-GCACGTGGT-GAGGG--TCACAACA--GGGGTAAATTCTAATT-CAACAGGTAC--T--GGGGCATG----AATCACGT-AATAATAC-C---CC-CCC---CCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGNATCTACACATTTTTTAAAAAGTATGATTGGAAAATAC-CTATCC----AAATATTCTAAGTAGAAA----CATGATCACGA-NA--TTTTAATATTTTTT-AAA-TTATCTACAGCGA----ATTTTACAAAACATAATT-AA--------------TAAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCNAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
gi|1 : TTGTATTGGGCGCG-CATGTGCGTTCGCGCGCCAC-AA-T----TTTT--G---AT--GAAAATTTATCG-C-TT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAGTAGTCTCACAGAAGTC-GCACGTGGT-GAGGG--TCACAACA--AGGGTAAATTCTAATT-CAACAGGTAC--T--AGGGCATG----AATCACGT-AATATTAC-C---CC-CCC---CCCCAAC-CTTACTTGT-----TTT-CTGATC-TGGAATGTACACACTTTTTAAA--GTATGATAGGAAAATATACTATCC----AAATATTTTAAGTAGAAA----AATGGTCACGA-GA--T------ATTT----GAA-TTACCTACAACGA----ATTTAACAAAACATAAGT-AAAACAAATGAGTCGGTAAA-AAAGTGGGGCTGGACATTACATAAT-CCATGTCCTTAGACCTGAGGTTTAACTCGGATTCC-------CGGGGGAGGG
gi|10 : aggtgaCGAGCTCGATTATTTCACCAG-----------AAGTC-GAACATGAT-GAGGG--TCACAACA--GGGGTAAATTTTAATT-CAACAGGTACTTT--GGGGCATGATCAAATCACGT-AATAATACACACACA-CAC---CCCCAAC-CTTACTCAT-----TTt
gi|11 : GCGC-CCACTAACT----TTTT--G---AGT-GAAA--GTATCG-CTTT------ATTTT-AA-TCGTTC-TATCATAC-CGATTA-TTCGCCA------------AACT--GCACGT-GT-G-GGG--T-ACGAAATTCGGCT--ATTCAAGTTCCAACAGGTACT-T--GGTGCATG----A
gi|12 : ATCGAGCTCGATTATTTCACCAG-----------AAGTC-GTACGTGGT-GACGG--TCACAACA--GTGATAAACTCTAA----------------------------------ACGC-AATAATAC-C---CCACCCTAACCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGAATCTACACATTTTg
gi|13 : TTGTATTTGGCGCG-C-C-------TGCGCGTAAC-AA-T-------------------AAAATTCATTG-C-TT------ATTTTGAA-TCATACATGTCAGGCTTGA-TATTTCGCCA-----------GAAGTT-GCACATGGT-GGGGG--T
gi|14 : tagATTCGGCGTGTC-CGCGCGTCTG----------A-TTTAGTTCT--G---AA--GAAAATGTATCG-C-TT------ATTTCAAA-CCGTA-----CG----TGA-----TCACC-T----------GAAGTC-GCACGTGGT-GATAA--TTACAA
gi|15 : AAATTTATCG-C-TT------ATTTCCAA-TCGTACGTATTGGGCTTGA-TATTTCACCA-----------GAAGTC-GCAAGGGGT-GGGGG--TCACAAC
gi|16 : agttgtattcgcccaaattT------ATTTCCAA-TCGTACGTAT--------------TCACCAG----------GT-GTC-GCACGTGGT-G-GGG--TCACAACA--GGGG-AAATTTTGGTT-
gi|17 : acgctaattgtattccgcgcgcccaaaTCGGCGCGCCAC-AA-T----TTTT--TTTTAT--GGAAATTTATCG-C-TT------ATTTTCAA-TCGGGC-TAT
gi|18 : gttatatA-TCACG--TATCGAACTTGAT-ATTTCACCA-----------AAAGT---CACTCGGTGGAGGG--TTACAA
gi|19 : ccTTGTATTCGGCGCG---------TCCGCGCACC-C-AA-A----T--------------AAAATTTATCG-C-TT------ATTCCCA
gi|2 : agTCCGAGCGCCAC-AA-T----TTTTTGA---AA--GAAAATGTATCG-C-TTTATTTAATTTTCAA-TCGTGC-TATTGAGTTCGATTATTTCACCAG-----------ACGTG-GGACGTGGT-GAGGG--TCACAACA--GGGATAAAT-------------GGTAC--TTGGGGGCATG----AATCACGT-AATAACAC-C---CC-CCC---CCCCAAC-CTTACTCATACACGTTG-ATGATCACGATATTTTAATATTTTTTTAAA
gi|2 : atATGATCACGA-TA--TTTTAATATTTTTTTAAA-TTATCTACAGCGA----ATTTTACAAAACATAATT-----------------TAAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCAAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGttatctacagcgaattttacaaaacataatttaaaaaagtgagactgggcattgcatagtacatgtccaaagacatgaggtataacttggattcccccgcctcggggggggg
gi|3 : attccgagcgccacaattttttgaaagaaaatgtatcgctttatttaattttcaatcgtgctattgagttcgattatttcaccagacgtgggacgtggtgagggtcacaacagggataaatggtacttgggggcatgaatcacgtaataacacccccccccccaaccttactcatacacgttgTCCGAGCGCCAC-AA-T----TTTTT-G---AA--AGAAATGTATCG-C-TTTATTTAATTTTCAA-TCGTGC-TATTGAGTTCGATTATTTCACCA-----------GACGT--GGACGTGGT-GA-GG--TCACAACA--GGGATAAAT-------------GGTAC--TTGGGGGCATG----AATCACGT-A--AATACAC---CC-CCC---CCCCAAC-CTTAC-CATACACGTTG-ATGATA-CGATATTTTAATATTTTTTAAA
gi|3 : tATGAT-ACGA-TA--TTTTAATATTTTTT-AAACTTATCTACAGCGA----ATTTTACAAAACATAATT-TA---------------AAA-AAAGTGAGACTGGGCATTGCATAGTAACATGTCCAAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGcttatctacagcgaattttacaaaacataatttaaaaaaagtgagactgggcattgcatagtaacatgtccaaagacatgaggtataacttggattcccccgcctcggggggggg
gi|4 : ttccgagcgccacaattttttgaaagaaatgtatcgctttatttaattttcaatcgtgctattgagttcgattatttcaccagacgtggacgtggtgaggtcacaacagggataaatggtacttgggggcatgaatcacgtaaatacaccccccccccaaccttaccatacacgttgC-AA-T----TTTT--G---AA--AGAAATGTATCG-C-TTTATTTAATTTTCAA-TCGTGC--ATTGAGTTCGATTATTTCACCA-----------GACGT--GGACGTGGT-GA-GG--TCACAAC---GGGATAAAT--------------GTACT-T--GGGGGATG----AATCACGTAAATAA-AA-C---CC-CCC---CCCCAAC-CTTACTCATACAC-TTG-ATGATC-ACATATTTTAATATTTTTTAAA
gi|4 : ATGATCAC-A-TA--TTTTAATATTTTTT-AAACTTATCTACAGCGA----ATTTTACAAAACATAATTTAA--------------TTAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCCAAAGAATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGcttatctacagcgaattttacaaaacataatttaattaaaaagtgagactgggcattgcatagtacatgtcccaaagaatgaggtataacttggattcccccgcctcggggggggg
gi|5 : caatttttgaaagaaatgtatcgctttatttaattttcaatcgtgcattgagttcgattatttcaccagacgtggacgtggtgaggtcacaacgggataaatgtacttgggggatgaatcacgtaaataaaaccccccccccaaccttactcatacacttgCACAACA--GGGGTAAATTCTAATT-CAACAGG-AC--C--------TG----AATCACTT-AATAATAC-T---CC-CAC---CCC-AAC-CTTACTCAC-----TTT-CTGATC-TGGAATTTACACACTTTTT-AAAAGTATGATTGGAAAATACTCTATCCAATTAAATATT-TAAGTAGAAACATGCATGATCACGAGAA--GTTTACTAACTTTT-CAA-TTATCTACATCGA----ATTTTACAAAAC---ATT-AG--------------TAAATGAAATGAG
gi|6 : gtcaaacacca---CC-CCC---TCCCAAC-CTTACCCAT-----TTT-CTGATC-TGGGTTCTACACACTTTTT-AAAAGTGTGATTGGAAA-------------------ATTCTAATTAGAAA----CATGATCACGA-GATTTTTTACTAATTTTT-GAA-ATATCTATCATGAAAGTATTTAACGAAA---GAGT-AA---------------AAA-AAGGCGGGGCTTGGCATTAAATTAT-CCATGTCCTAAGGCCTGccagaagaaaagtggggctgaacaataacaatatgcactta
gi|7 : a-T----TCTT--G---AGA-GAAAATGTAACGGC-TTG-----ATTTTTAAATCGTACATA-CGGGTTCGAATATTTCACGA-----------GAAGTCGGCACATGG--GAGGGGTCCACAACA--GG---------TAATT-CCATACGCTC--T--GGGGTA---------------AAAAAT--------C-TGG---CCCCAATGCTTAATTAT-----TTTACTGATC-TGGGATCTACATATTTgactctcgggggaggtct
gi|8 : at-T----TCTT--G---AGA-GAAAATGTAACG-C-TT------ATTTTTAA-TCGTACATACCGGGTTCGA-TATTTC-CCGA----------GAAGTC-GCACATGG--GAGGG--TCACAACA--GGG--------TAATC-CAATACGCTC--T--TGG---------------GT-AA-AAT----------CTC---CCCCAA--CTTAATTAT-----TTT-CTGATC-TGGGATCTACATATTTTTg
gi|9 : gtcagtttat-C-CGCACGTATGTGCGCCAC-AA-T----TTTT--G---AGATGAAAATGTATCG-C-TT------ATTTTCAA-TCGTTC-TATCGAACTCGATTATTTCGCCA-----------AAACTC-GCACGTGGT-GAGGG--TCACAATT--AGGGTAAATTCAAATT-CAACAGGTACT-T--GGTGCATG----AGT
blockSeqs : TCCGCG C T C TTAG TTTTAT G T TATTTA A A A T TG CG G GT TT G TCAAGTTCCAAC TTTG ATCA A T ACACACA A TAA G ACACG A A A T A ATACTCTATCCAATT C CATG GA TT A T C AAGT A TAAT T AA A C
blockSeqs : CCGCA C . . . TGAAA . . TATTTA . G T T GG C . . . C TTTAATTCAAC TTGG . . T ACAC . . . ACACG . . T A A . . . T . A . C . A AGT . A A C
blockSeqs : CC C . . . GAGAT . . TATTTA . G A T AG C . . . A TCTAATTCAAC TTGG . . T ACC . . . ACAC . . T A A T . A . . . A TA . A C C
blockSeqs : . C . . . GAGT . . G . A G T G T . . . G TCAAATTCAAC TTG . . T ACC . . . . . . T . T . C . . . . AA . C T
blockSeqs : A . . . TGAA . . . . A G T G C . . . A TAATTCCAT TTG . . T AAC . . . . . . A . G . C . . . . T .
blockSeqs : A . . . GAGA . . . . . A T G C . . . A TAATCCAAT TTG . . A ACT . . . . . . G
blockSeqs : T . . . GAGA . . . . . A T G C . . . A TCTAA TG . . . . . . . . . . G
blockSeqs : . . . . GAA . . . . . A A A G . . . G . TT . . . . . . . . . . G
blockSeqs : . . . GAA . . . . . A T G C . . . G . C . . . . .
blockSeqs : . . . . . . . . G . G C . . . . . . .
blockSeqs : . . . . . . . . G . G . . . . .
blockSeqs : . . . . . A . G . . .
blockSeqs : . . . . . A . . .
blockSeqs : . . . . . .
blockSeqCons : GAGA****** G*********** TCAATTCAAC** TTG*** AGT***************
originalCons : NNNNNNTTGTATTCGGCGCG-C-CGCGCGTCCGCGCGCCAC-AA-T----TTTT--G---AG--GAAAATGTATCG-C-TT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAG----------GAAGTC-GCACGTGGT-GAGGG--TCACAACA--GGGGTAAATTCTAATT-CAACAGGTAC--T--GGGGCATG----AATCACGT-AATAATAC-C---CC-CCC---CCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGNATCTACACATTTTTTAAAAAGTATGATTGGAAAATAC-CTATCC----AAATATTCTAAGTAGAAA----CATGATCACGA-NA--TTTTAATATTTTTT-AAA-TTATCTACAGCGA----ATTTTACAAAACATAATT-AA--------------TAAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCNAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
finalCons : NNNNNNTTGTATTCGGCGCG-C-CGCGCGTCCGCGCGCCAC-AA-T----TTTTGAGA------GAAAATGTATCG-C-TT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAG-----------AAGTC-GCACGTGGT-GAGGG--TCACAACA--GGGGTAAATTCAATTCAAC--AGGTACTTG---GGGCATG----AATCACGT-AATAATAC-C---CC-CCC---CCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGNATCTACACATTTTTTAAAAAGTATGATTGGAAAATAC-CTATCC----AAATATTCTAAGTAGAAA----CATGATCACGA-NA--TTTTAATATTTTTT-AAA-TTATCTACAGCGA----ATTTTACAAAACATAATTAGT---------------AAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCNAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
Alignments
lowQualScore : 2222222 111111111 333333 1 11111111111 3333333333333 111 1111111 22222 1 555555555555555 1 2222 1 1111 6666666666666666666
lowQualScore : 0 5555555 2 0 4 3 7777 444444444 6 3 000000 2 0 4 1 7 22222222222 77 2 33 44 3 3 3333333333333 3 3 000 3 0 888888 0 66 3333333 4 777 4 88888 4 4 1 1 3 666666666666666 2 8888 77 99 3 6 3 4444 6 3 4444444444444444444 6 88 1 0 2
lowQualScore : . ....... . . . . .... ......... . . ...... . . . . . ........... .. . .. .. . . ............. . . ... . . ...... . .. ....... . ... . ..... . . . . . ............... . .... .. .. . . . .... . . ................... . .. . . .
lowQualScore : 2 6666666 9 1 0 3 1111 111111111 1 1 444444 9 4 3 6 4 77777777777 11 7 77 66 7 3 3333333333333 5 6 888 6 5 888888 7 44 4444444 0 000 0 55555 4 4 0 7 2 000000000000000 0 3333 77 22 0 7 3 2222 7 2 0000000000000000000 7 66 0 6 5
consensus : NNNNNNTTGTATTCGGCGCG-C-CGCGCGTCCGCGCGCCAC-AA-T----TTTT-G---AGA-GAAAATGTATCG-CTT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAG-----------AAGTC-GCACGTGGT-GAGGG--TCACAACAG--GGGTAAA-TTC-AA--TTCAACAGGTAC-T-T-GGGGCATG----AATCACGTAA-TAATAC-C---CC-CCC---CCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGNATCTACACATTTTTTAAAAAGTATGATTGGAAAATAC-CTATCC----AAATATTCTAAGTAGAAA----CATGATCACGA-NA--TTTTAATATTTTTT-AAA-TTATCTACAGCGA----ATTTTACAAAACA-TAATT-A--------------GT-AAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCNAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
Reference ( family-1472 ) : NNNNNNTTGTATTCGGCGCG-C-CGCGCGTCCGCGCGCCAC-AA-T----TTTT-G---AGA-GAAAATGTATCG-CTT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAG-----------AAGTC-GCACGTGGT-GAGGG--TCACAACAG--GGGTAAA-TTC-AA--TTCAACAGGTAC-T-T-GGGGCATG----AATCACGTAA-TAATAC-C---CC-CCC---CCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGNATCTACACATTTTTTAAAAAGTATGATTGGAAAATAC-CTATCC----AAATATTCTAAGTAGAAA----CATGATCACGA-NA--TTTTAATATTTTTT-AAA-TTATCTACAGCGA----ATTTTACAAAACA-TAATT-A--------------GT-AAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCNAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGG
gi|1 : TTGTATTGGGCGCG-CATGTGCGTTCGCGCGCCAC-AA-T----TTTT-G---AT--GAAAATTTATCG-CTT------ATTTTCAA-TCGTGC-TATCGAGCTCGATTATTTCACCAGTAGTCTCACAGAAGTC-GCACGTGGT-GAGGG--TCACAACAA--GGGTAAA-TTCTAA--TTCAACAGGTAC-T---AGGGCATG----AATCACGTAA-TATTAC-C---CC-CCC---CCCCAAC-CTTACTTGT-----TTT-CTGATC-TGGAATGTACACACTTTTTAAA--GTATGATAGGAAAATATACTATCC----AAATATTTTAAGTAGAAA----AATGGTCACGA-GA--T------ATTT----GAA-TTACCTACAACGA----ATTTAACAAAACA-TAAGT-AAAACAAATGAGTCGGT-AAA-AAAGTGGGGCTGGACATTACATAAT-CCATGTCCTTAGACCTGAGGTTTAACTCGGATTCC-------CGGGGGAGGG
gi|10 : aggtgaCGAGCTCGATTATTTCACCAG-----------AAGTC-GAACATGAT-GAGGG--TCACAACAG--GGGTAAATTTT-AA--TTCAACAGGTACTT-T-GGGGCATGATCAAATCACGTAA-TAATACACACACA-CAC---CCCCAAC-CTTACTCAT-----TTt
gi|11 : GCGC-CCACTAACT----TTTT-G---AGT-GAAA--GTATCG-CTTT-----ATTTT-AA-TCGTTC-TATCATAC-CGATTATT-CGCCA------------AACT--GCACGTG-T-G-GGG--T-ACGAAATTCGGCTA---TTC-AAGTTCCAACAGGTAC-T-T-GGTGCATG----A
gi|12 : ATCGAGCTCGATTATTTCACCAG-----------AAGTC-GTACGTGGT-GACGG--TCACAACAG--TGATAAA-CT-----------------C-T---------------AA--ACGCAA-TAATAC-C---CCACCCTAACCCCAAC-CTTACTCAT-----TTT-CTGATC-TGGAATCTACACATTTTg
gi|13 : TTGTATTTGGCGCG-C-C-------TGCGCGTAAC-AA-T------------------AAAATTCATTG-CTT------ATTTTGAA-TCATACATGTCAGGCTTGA-TATTTCGCCAG-----------AAGTT-GCACATGGT-GGGGG--T
gi|14 : tagATTCGGCGTGTC-CGCGCGTCTG----------A-TTTAGTTCT-G---A-A-GAAAATGTATCG-CTT------ATTTCAAA-CCGTA-----CG----TGA-----TCACCTG-----------AAGTC-GCACGTGGT-GATAA--TTACAA
gi|15 : AAATTTATCG-CTT------ATTTCCAA-TCGTACGTATTGGGCTTGA-TATTTCACCAG-----------AAGTC-GCAAGGGGT-GGGGG--TCACAAC
gi|16 : agttgtattcgcccaaattT------ATTTCCAA-TCGTACGTAT--------------TCACCAG-----------GTGTC-GCACGTGGT-G-GGG--TCACAACAG--GGG-AAA-TT
gi|17 : acgctaattgtattccgcgcgcccaaaTCGGCGCGCCAC-AA-T----TTTT-TTTTATG-GAAA-TTTATCG-CTT------ATTTTCAA-TCGGGC-TATttggtt
gi|18 : gttatatA-TCACG--TATCGAACTTGAT-ATTTCACCAA-----------AAGT---CACTCGGTGGAGGG--TTACAA
gi|19 : ccTTGTATTCGGCGCG---------TCCGCGCACC-C-AA-----------------A-TAAAATTTATCG-CTT------ATTCCCA
gi|2 : agTCCGAGCGCCAC-AA-T----TTTTTG---AAA-GAAAATGTATCG-CTTTATTTAATTTTCAA-TCGTGC-TATTGAGTTCGATTATTTCACCAG-----------ACGTG-GGACGTGGT-GAGGG--TCACAACAG--GGATAAA-T--------------GGTAC-T-TGGGGGCATG----AATCACGTAA-TAACAC-C---CC-CCC---CCCCAAC-CTTACTCATACACGTTG-ATGATCACGATATTTTAATATTTTTTTAAA
gi|2 : atATGATCACGA-TA--TTTTAATATTTTTTTAAA-TTATCTACAGCGA----ATTTTACAAAACA-TAATT-----------------T-AAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCAAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGttatctacagcgaattttacaaaacataatttaaaaaagtgagactgggcattgcatagtacatgtccaaagacatgaggtataacttggattcccccgcctcggggggggg
gi|3 : attccgagcgccacaattttttgaaagaaaatgtatcgctttatttaattttcaatcgtgctattgagttcgattatttcaccagacgtgggacgtggtgagggtcacaacagggataaatggtacttgggggcatgaatcacgtaataacacccccccccccaaccttactcatacacgttgTCCGAGCGCCAC-AA-T----TTTTTG---AAA-GAAA-TGTATCG-CTTTATTTAATTTTCAA-TCGTGC-TATTGAGTTCGATTATTTCACCAG-----------ACGT--GGACGTGGT-GA-GG--TCACAACAG--GGATAAA-T--------------GGTAC-T-TGGGGGCATG----AATCACGTA---AATACAC---CC-CCC---CCCCAAC-CTTAC-CATACACGTTG-ATGATA-CGATATTTTAATATTTTTTAAA
gi|3 : tATGAT-ACGA-TA--TTTTAATATTTTTT-AAACTTATCTACAGCGA----ATTTTACAAAACA-TAATT-----------------TAAAA-AAAGTGAGACTGGGCATTGCATAGTAACATGTCCAAAGACATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGcttatctacagcgaattttacaaaacataatttaaaaaaagtgagactgggcattgcatagtaacatgtccaaagacatgaggtataacttggattcccccgcctcggggggggg
gi|4 : ttccgagcgccacaattttttgaaagaaatgtatcgctttatttaattttcaatcgtgctattgagttcgattatttcaccagacgtggacgtggtgaggtcacaacagggataaatggtacttgggggcatgaatcacgtaaatacaccccccccccaaccttaccatacacgttgC-AA-T----TTTT-G---AAA-GAAA-TGTATCG-CTTTATTTAATTTTCAA-TCGTGC--ATTGAGTTCGATTATTTCACCAG-----------ACGTG-G-ACGTGGT-GAGG---TCACAAC-G--GGATAAA-T---------------GTAC-T-T-GGGGGATG----AATCACGTAAATAA-AA-C---CC-CCC---CCCCAAC-CTTACTCATACAC-TTG-ATGATC-ACATATTTTAATATTTTTTAAA
gi|4 : ATGATCAC-A-TA--TTTTAATATTTTTT-AAACTTATCTACAGCGA----ATTTTACAAAACA-TAATTTA--------------AT-TAA-AAAGTGAGACTGGGCATTGCATAGT-ACATGTCCCAAAGAATGAGGTATAACTTGGATTCCCCCGCCTCGGGGGGGGGcttatctacagcgaattttacaaaacataatttaattaaaaagtgagactgggcattgcatagtacatgtcccaaagaatgaggtataacttggattcccccgcctcggggggggg
gi|5 : caatttttgaaagaaatgtatcgctttatttaattttcaatcgtgcattgagttcgattatttcaccagacgtggacgtggtgaggtcacaacgggataaatgtacttgggggatgaatcacgtaaataaaaccccccccccaaccttactcatacacttgCACAACAG--GGGTAAA-TTCTAA--TTCAACAGG-AC-C-T-G-----------AATCACTTAA-TAATAC-T---CC-CAC---CCC-AAC-CTTACTCAC-----TTT-CTGATC-TGGAATTTACACACTTTTT-AAAAGTATGATTGGAAAATACTCTATCCAATTAAATATT-TAAGTAGAAACATGCATGATCACGAGAA--GTTTACTAACTTTT-CAA-TTATCTACATCGA----ATTTTACAAAAC----ATT-A--------------GT-AAATGAAATGAG
gi|6 : gtcaaacacca---CC-CCC---TCCCAAC-CTTACCCAT-----TTT-CTGATC-TGGGTTCTACACACTTTTT-AAAAGTGTGATTGGAAA-------------------ATTCTAATTAGAAA----CATGATCACGA-GATTTTTTACTAATTTTT-GAA-ATATCTATCATGAAAGTATTTAACGAAAGAGTAA---------------------AAA-AAGGCGGGGCTTGGCATTAAATTAT-CCATGTCCTAAGGCCTGccagaagaaaagtggggctgaacaataacaatatgcactta
gi|7 : a-T----TCTT-G---AGA-GAAAATGTAACGGCTTG-----ATTTTTAAATCGTACATA-CGGGTTCGAATATTTCACGAG-----------AAGTCGGCACATGG--GAGGGGTCCACAACAG--G---------T-AA--TTCCATACG--C-TCT-GGGGTA--------------AA-AAAT--------C-TGG---CCCCAATGCTTAATTAT-----TTTACTGATC-TGGGATCTACATATTTgactctcgggggaggtct
gi|8 : at-T----TCTT-G---AGA-GAAAATGTAACG-CTT------ATTTTTAA-TCGTACATACCGGGTTCGA-TATTTCCCGAG-----------AAGTC-GCACATGG--GAGGG--TCACAACAG--GG--------T-AA--TCCAATACGCTC-T-T-GG----------------GTAA--AAT----------CTC---CCCCAA--CTTAATTAT-----TTT-CTGATC-TGGGATCTACATATTTTTg
gi|9 : gtcagtttat-C-CGCACGTATGTGCGCCAC-AA-T----TTTT-G---AGATGAAAATGTATCG-CTT------ATTTTCAA-TCGTTC-TATCGAACTCGATTATTTCGCCAA-----------AACTC-GCACGTGGT-GAGGG--TCACAATTA--GGGTAAA-TTCAAA--TTCAACAGGTAC-T-T-GGTGCATG----AGT