lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 999999999999 111 22 11 11 11111 444444444 11 111 44444444444 1 11 11111 111 444444444444444444 1111 1111111111111111111111111111111111111111111111111111111111 111 3333333 6666666666666666666666666 1 111 2222222222222222222 1111 4444444444444 111111
lowQualScore : 0 7 77 777777777777 6 4 666 77 2 11 6 11 88888 888888888 11 111 44444444444 44 5 99 6 99 3 44444 3 77 44 3 6 99 111 6 6 3 777777777777777777 7 4444 9999999999999999999999999999999999999999999999999999999999 1 99 3 222 4444444 99 3333333333333333333333333 3 6 888 000 1 1 1 8 99 7777777777777777777 7777 1111111111111 666666
lowQualScore : . . .. ............ . . ... .. . .. . .. ..... ......... .. ... ........... .. . .. . .. . ..... . .. .. . . .. ... . . . .................. . .... .......................................................... . .. . ... ....... .. ......................... . . ... ... . . . . .. ................... .... ............. ......
lowQualScore : 7 3 00 888888888888 5 0 222 55 5 00 6 22 66666 888888888 00 888 00000000000 99 0 00 7 22 5 88888 5 99 22 0 7 22 777 7 7 3 000000000000000000 0 2222 7777777777777777777777777777777777777777777777777777777777 0 22 0 333 3333333 22 7777777777777777777777777 3 7 333 888 7 7 0 3 22 2222222222222222222 0000 5555555555555 000000
consensus : AAAAAACTGGCTAGAACC----A-CAANANACTTTTGGAGGGAAAAACTCCACAGACC--AATNCAAAAGCAAAAGACAAA--CTAAAAGACC-AATG---AAAT--TAAAAGATACA---------CAGTTAGAATAACATTAGGGCCCCGAGG--CTAAATT-C-TGGAC--CTTTCTGGAANTTGA-CC--ATT---TA-A-AAA----T------CAATAT-GGAGCTCTGC----AGGT--AAA---CTGAAGTGAGTAGA---TAA------TGCTA-AG---------A--AGACCTATGCTG--AATTA--ATAA--T---TAC--TAAATA-----ANTTNA--------------ATAA-AT-GA-T-GC-ACATGGCATATGCATTAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT--GAG-TCTGTCAC
Reference ( gi|3 ) : AAAGAACTGATTAAAACCCATAACCAAGAAACGTGTGGAGGGAAAA--TCCACAGACC--AATACAAAAGCAAAAGACAAA--CTAAAAGACA-AATG---AAAT--TAAAAGATACA---------TAGCCAGACTACAATTAGGGCCCTGAGG--CTAAAAT-T-TAGAC--CTTTTTGGAAATTGA-CC--ATT---TA-A-AGA----T------GAATAT-GGAGATCTGC----AGGT--GAA---CTTAA-TGAGTAGA---TAA------TGCTA-AG---------A-AAGGCCTATGCTG--AATTA--ATAA--T---TAC--TAAATA-----ACTTTA--------------ATAA-AT-GA-T-GC-ATATGGCATATACAATAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT--GAA-TCTGTCAC
gi|1 : AAAGA-CTGACCA-----CA-AAGCAGAGAACACTTGGAGGGAAAAACTCCA-AGACC--AATCCAAAAGAACAAGACAAA--CTAAAACACC-AATG---AAAT--TAAAAGACACAGCGGACATTTGGGCAGAGTATAATTATACACCCAAGG--CCA-----T-TACAC------TGGGAAACTGA-CCAAATT---TA-A-CGC----T-----------T-GA----CTGC----AGGT---------TTAA--------A---TTA------TGTTA------------------CCT-TG-TG-----TA--ATGATTT---TAT--TAAACACAGTCAATTCATATGTGTTTGAAATATAA-AT-GA-T-GCTATAT-ACATGTACTATAT--TA--------TAT--------ACCATA----
gi|4 : actctcactaatcatttactctaggaaggtgctaataaagggattttgtacaaaaattatagattttacatttagtaaaggaattaaagaatatatttgtattagtaataaattattaacttaccaatctagaagaaaatgtcggtctcaaagtctgtttgtcaaaatgtcagatatactcaaatacaacttcctagctcagaaactcaacAAAAAACTGGCTAGAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACC--AATGCAAAAGC-AAAGACAAA--T--AAAGAC---------AAAC--TA----ATA-A---------CAGTTAGAATAACATTAGGGCCTTGA-G--CTTAATT-C-TGGAC--Ctcata
gi|13 : cacttctcacagttcatttactccacgaaaagtgatgggaattaatcataaatatatacatataattatatactttttatctaattggagaatggagataatgtatttaatagtagtacatgaattaagtattatgcaagaaagggtaaatgtcaaacagtcaaactatatgaattcactatctgaacaAAAAACTGGCTAGAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACC--AATGCAAAAGC-AAAGACAAA--T--AAAGAC---------AAAC--TA----ATA-A---------CAGTTAGAATAACATTAGGGCC
gi|12 : CAAGAAATCTGTGAGGGTAAAAACTCCACAAACCAGAATAGAAAATGAAAAGACAGAACCTAAAAGACCTAATGAATAAATAGTAAAAGATACAAT-------TAGCt
gi|15 : AGACC--AAGCCAAGAGCACAAAACAAA--CTAATACACA-AAGG---AAAT--TAAAAGACACA---------atgcataggcagaataaaggcctaattaacgggccgactgacaagg
gi|6 : aGAGGTCCTATAATAT-CGGAC--CTTTCTGGAACTTGGGCC--ATT---TATA-AAA----TCATAGAGAGCTTCGGAGCTCTGC----AGGT--AAA---CTGAAGTGAGTAGA---CAACTCACCTGC-----------------AGACTTATGTTG--AATTA--ATA---------C--TAAATA-----ACTTAA--------------ATAA-AT-AAAT-GC-ACATGGCATATGCATTAT--GA--------TGCACATATGCACAATA----AAT----AT--A--A-AAACAT--GAG-TCTGTCACaaagaccatgaatatacaatataca
gi|7 : G--CTTAATT-C-TGGAC--CTCCT-GGATATGGA-CC--ATT---TA-A-AAAAGAAT------CAATAT-CGAGATCTGC----AGGT--AAA---TTGAA-GGAATAGG---TAA------TTCAA-CG---------G-AAGACTTATGCTG--AAGTA--CTAA--TTTATGC--TAAACA-----ATTTTA--------------ATCATAA-GA-T-GC--CATGGCGTATGCATTGT--GATGCACATGTGC--------ACAATA----AAT-----T--T--AGAAAAAT--TAG-TCTGTC
gi|10 : ga--CTAAATT-C-TGGAC--CTTTCTGGAAATTGA-CC--TTC---TA-A-AAA----T------CAAT-T-GGAAATCTGC----AGGT--AAG---CTGAAGTGAGTAGA---TAA--------CTC-ACCT-------A-CAGATTTATGCTG--AATTA--ATAA--A---TAC--TAAATA-----AA-TAA--------------ATAA-ATAGA-T-GC-ACATGGCACATGCATTAT--GA--------TGC--------ACAg
gi|5 : --CTAAAAT-TCTGGACGTCTTCCTGGAACTTTG-CC--ATTCGGTA-ACAAA----T------CAATAA-GGAGCTCTGCGAGAAGGTTTAAATATCTGAAGTGAGTAAA---T--------TG--A-AGCCGTCACCTACAAGGACTATGCTACAAATTG---TAAC-T---TAAGATAAATAC----ACACTA--------------GCAAGAT-AG-G-GC-CTACGACA---ACAACATCCGA--------TGC--------ACAATA----AAT----ATAAT--A-AAACATTAGAAGCCTGTCAC
gi|8 : AC--CTTTCTGGAACTTGA-AC--ATT---TA-A-AAA----T------CAATA--GGAGCTCTGC----AGGT--AAA---TTAAG-TGAGTAGAACTTCA------T-CTGCAG---------A------CTATGCTG--AAGTAACATAC--A---TAC--GAAATA-----A--TTAG-------------ATAA-AT-AA-TGGC-ACA-GGCATATGCATTAT--GT--------CGC--------ACCATATGCCAATCAAAAT--TTAA-AAACAT--GAT-TCTGTCAat
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): AAAATAAGTACCGATCTCATGATACATTTACTCAGGATAAAGTACACAGAAAATTAATCTTAATATTTAGGATTTACTAAAGATATATATTATCATTAGAAATAAATTAGTAACTTATCCATCAAGAGGAAAAGTCAGTCTCCAGTTGGAATGTCACAAAGGGCTATTTACAGTAAAAAATCAAACATATACATGTACTGATCAGTTTGAAATTCAATACTAATACAAGGGACTCTATTGGAGGAAATAATCCACTAAACTAAAACATCAATTAAATCAAATTAAACCAAGACATAATTAGGGACCTCAGATATTTACTACCGAACTCACCAAGTGTTATGTTTGACTGAGTTTTGAATCAAAGATTCACTGAGGGGTTATATCACTCGATATAAATGTATATACGTAGTAAAATCAAATTAAAATCTGACAAAATAATAATGCAAACATGCATATATGAATTCATTACATGTATATCATA
Unaligned ( gi|9 ): CACTCTCACTGATCATTAACTCTAGGAATGTGCTTATATAAAGGGAATTTATGCAAAAATACATATTTTACATTTAGTAAAGGAATTAACTAATAGATTAGCATTCGTAATAAAATTTTAACTTACCAATTTTGTGGAAAATGTCAGTCTCTATGTATGCTGGTCAAAATGTCAGAAACTCAAATTACAGCT
Unaligned ( gi|11 ): AAGACATAATTAGGGACCTTAGGCACTTGCTACCAGAGGACTAAGAGAACTCACCAAGGTTATGCCTGACCGAATATGGAGTTTAAACCCATTGAAAGGATTGTATTATGAAATACTGAAATCAAATTAAAATCAAATGATGGCAATGCACAAGTGAATGCA
Unaligned ( gi|14 ): TCTGGTTGTCAAGAAATGTCAGCTGGTTTACTCAATTCAACTTTCTCCTCCAAACACTGAACAAAGCCTGACCACAAAGAAAGAACTCTGGGAGGAAAAA
Unaligned ( gi|16 ): TAAAATAAGTATCTCTCTCATTATTCATTTACTCGGGATGAAGTGCACAGA
Unaligned ( gi|17 ): GTGAGTAGATAACTCATCTGCAGACTTATGCTGAAGTAA
Unaligned ( gi|18 ): TTATACCATACACATGTATAATATGAGTCTGTCACA
Alignments
lowQualScore : 1 3333333 1 22 1111 333333333 222222 1111 11 111 111 1111 333333333 1111 111 111111 888888888888888888888 1111111111 11 2222222 1111 44444444444444444 1111 22222222222 111
lowQualScore : 0 5555555 1 1 0 55 99 1 1111 222222222 99 3 777777 7777 44 0 0 2 99 11 000 66 3 1 5 77 000 5 5 4444 000000000 2 4444 99 111 2 111111 222222222222222222222 6 8 8888888888 1 7 1 6 6 77 6 1111111 99 4444 99 33333333333333333 7777 77777777777 8 444
lowQualScore : . ....... . . . .. .. . .... ......... .. . ...... .... .. . . . .. .. ... .. . . . .. ... . . .... ......... . .... .. ... . ...... ..................... . . .......... . . . . . .. . ....... .. .... .. ................. .... ........... . ...
lowQualScore : 0 2222222 0 0 4 44 22 0 8888 777777777 22 2 555555 0000 88 8 7 5 22 11 000 99 6 0 7 99 000 7 7 2222 222222222 5 2222 22 777 5 000000 666666666666666666666 6 3 2222222222 7 5 0 7 7 00 7 7777777 22 2222 22 77777777777777777 0000 00000000000 0 000
consensus : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAAACTCCACAGACC--AATNCAAAAGCAAAAGACAAA--CTAAAAGAC--AATG---AAAT--TAAAAGATAC-----ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---T--AA--T-----C---TAA---G-NAGACCTATGCTGAANTA--ATAAT---TACTAAATAACTTAA-ATAA-AT-GAT-GCAC-------AT--GGCATATG----CATTAT--G--------A--------TGCACAATA----AAT----AT--T--A-AAACAT---GAGTCTGTCAC
Reference ( family-146 ) : AAAAAACTGGCTA-GAACC----AC-AANANACTTTTGGAGGGAAAAACTCCACAGACC--AATNCAAAAGCAAAAGACAAA--CTAAAAGACC-AATG---AAAT--TAAAAGATAC-----ACAGTT----AGAATAACATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAANTTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGCTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---T--AA--TG----C---TAA---G-AAGACCTATGCTGAATTA--ATAAT---TACTAAATAANTTNA-ATAA-AT-GAT-GCAC-------AT--GGCATATG----CATTAT--G--------A--------TGCACAATA----AAT----AT--T--A-AAACAT---GAGTCTGTCAC
gi|1 : AAAGACTGACCACAAAGC----AG-AGAACACTT--GGAGGGAAAAACTCCA-AGACC--AATCCAAAAGAACAAGACAAA--CTAAAACACC-AATG---AAAT--TAAAAGACACAGCGGACATTTGGGCAGAGTATAATTATACACCCAAGG--CC---ATTACACTG-----------GGAAACTGA-CCAAATT---TA-A-
gi|10 : actctcactaatcatttactctaggaaggtgctaataaagggattttgtacaaaaattatagattttacatttagtaaaggaattaaagaatatatttgtattagtaataaattattaacttaccaatctagaagaaaatgtcggtctcaaagtctgtttgtcaaaatgtcagatatactcaaatacaacttcctagctcagaaactcaac--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--TTC---TA-A-AAA----TCAAT---------TGGAAATCTGC----AGG--TAAG---CTGAAGTGAGTAGA---T--AA--CT----CACCTAC------AGATTTATGCTGAATTA--ATAAA---TACTAAATAAA-TAA-ATAA-ATAGAT-GCAC-------AT--GGCACATG----CATTAT--G--------A--------TGCACAcgcttgactgcaggtttaaattatgttaccttgtgtaatgattttattaaacacagtcaattcatatgtgtttgaaatataaatgatgctatatacatgtactatattatataccatatcata
gi|12 : C-AAGAAATCTGTGAGGGTAAAAACTCCACAAACCAGAATAGAAAATGAAAAGACAGAACCTAAAAGACCTAATGAATAAATAGTAAAAGAT-------ACAATT----AGCAT-GCA-TAGG
gi|13 : AAAAACTGGCTA-GAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACC--AATGCAAAAGC-AAAGACAAA--T--AAAGAC---------AAAC--TA----ATA------ACAGTT----AGAATAACATTAGGGCCcagaataaaggcctaattaacgggccgactgacaagg
gi|15 : AGACC--AAGCCAAGAGCACAAAACAAA--CTAATACACA-AAGG---AAAT--TAAAAGACAC-----At
gi|17 : aGTGAGTAGA---T--AA--------C---TCATCTG-CAGACTTATGCTGAAGTA--Aaaagaccatgaatatacaatataca
gi|3 : AAAGAACTGATTA-AAACCCATAACCAAGAAACGTGTGGAGGGAAAA--TCCACAGACC--AATACAAAAGCAAAAGACAAA--CTAAAAGACA-AATG---AAAT--TAAAAGATAC-----ATAGCC----AGACTACAATTAGGGCCCTGAGG--CTA-AAAT---TTAGAC--CTTTTTGGAAATTGA-CC--ATT---TA-A-AGA----TGAATA--------TGGAGATCTGC----AGG--TGAA---CTTAA-TGAGTAGA---T--AA--TG----C---TAA---GAAAGGCCTATGCTGAATTA--ATAAT---TACTAAATAACTTTA-ATAA-AT-GAT-GCAT-------AT--GGCATATA----CAATAT--G--------A--------TGCACAATA----AAT----AT--T--A-AAACAT---GAATCTGTCAC
gi|4 : AAAAAACTGGCTA-GAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACC--AATGCAAAAGCAAA-GACAAA--T--AAAGAC---------AAAC--TAA----TA------ACAGTT----AGAATAACATTAGGGCCTTGA-G--CTT-AATT---CTGGAC--C
gi|5 : cacttctcacagttcatttactccacgaaaagtgatgggaattaatcataaatatatacatataattatatactttttatctaattggagaatggagataatgtatttaatagtagtacatgaattaagtattatgcaagaaagggtaaatgtcaaacagtcaaactatatgaattcactatctgaacaA-AATT---CTGGACGTCTTCCTGGAACTTTG-CC--ATTCGGTA-ACAAA----TCAATA--------AGGAGCTCTGCGAGAAGGTTTAAATATCTGAAGTGAGTAAA---TTGAAGCCGTCACC---TAC---A-AGGA-CTATGCTACA-------AAT---T-----GTAACTTAAGATAA-AT--AC-ACACTAGCAAGATAGGGCCTACGACAACAACATCCG--------A--------TGCACAATA----AAT----ATAAT--A-AAACATTAGAAGCCTGTCAC
gi|6 : ctaGAGGTCCTATAATA---TCGGAC--CTTTCTGGAACTTGGGCC--ATT---TATA-AAA----TCA-TAGAGAGCTTCGGAGCTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---C--AA--------C---TCACCTG-CAGACTTATGTTGAATTA--A-------TACTAAATAACTTAA-ATAA-ATAAAT-GCAC-------AT--GGCATATG----CATTAT--GATGCACATA--------TGCACAATA----AAT----AT--A--A-AAACAT---GAGTCTGTCACat
gi|7 : G--CTT-AATT---CTGGAC--CTC-CTGGATATGGA-CC--ATT---TA-A-AAAAGAATCAATA--------TCGAGATCTGC----AGG--TAAA---TTGAAG-GAATAGG---T--AA--TT----C----AACG-G-AAGACTTATGCTGAAGTA--CTAATTTATGCTAAACAATTTTA-ATCATAA-GAT-GC-C-------AT--GGCGTATG----CATTGT--G--------ATGCACATGTGCACAATA----AAT-----T--T--AGAAAAAT---TAGTCTGTC
gi|8 : gaAC--CTTTCTGGAACTTGA-AC--ATT---TA-A-AAA----TCAATA---------GGAGCTCTGC----AGG--TAAA---TT-AAGTGAGTAGAACTT--CA--T-----C---T-----G-CAGA-CTATGCTGAAGTAACATACA---TACGAAATAA-TTAG-ATAA-AT-AATGGCAC-------A---GGCATATG----CATTAT--G--------T--------CGCACCATATGCCAATCAAAAT--TTAA-AAACAT---GATTCTGTCAg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AAAATAAGTACCGATCTCATGATACATTTACTCAGGATAAAGTACACAGAAAATTAATCTTAATATTTAGGATTTACTAAAGATATATATTATCATTAGAAATAAATTAGTAACTTATCCATCAAGAGGAAAAGTCAGTCTCCAGTTGGAATGTCACAAAGGGCTATTTACAGTAAAAAATCAAACATATACATGTACTGATCAGTTTGAAATTCAATACTAATACAAGGGACTCTATTGGAGGAAATAATCCACTAAACTAAAACATCAATTAAATCAAATTAAACCAAGACATAATTAGGGACCTCAGATATTTACTACCGAACTCACCAAGTGTTATGTTTGACTGAGTTTTGAATCAAAGATTCACTGAGGGGTTATATCACTCGATATAAATGTATATACGTAGTAAAATCAAATTAAAATCTGACAAAATAATAATGCAAACATGCATATATGAATTCATTACATGTATATCATA
Unaligned ( gi|9 ): CACTCTCACTGATCATTAACTCTAGGAATGTGCTTATATAAAGGGAATTTATGCAAAAATACATATTTTACATTTAGTAAAGGAATTAACTAATAGATTAGCATTCGTAATAAAATTTTAACTTACCAATTTTGTGGAAAATGTCAGTCTCTATGTATGCTGGTCAAAATGTCAGAAACTCAAATTACAGCT
Unaligned ( gi|11 ): AAGACATAATTAGGGACCTTAGGCACTTGCTACCAGAGGACTAAGAGAACTCACCAAGGTTATGCCTGACCGAATATGGAGTTTAAACCCATTGAAAGGATTGTATTATGAAATACTGAAATCAAATTAAAATCAAATGATGGCAATGCACAAGTGAATGCA
Unaligned ( gi|14 ): TCTGGTTGTCAAGAAATGTCAGCTGGTTTACTCAATTCAACTTTCTCCTCCAAACACTGAACAAAGCCTGACCACAAAGAAAGAACTCTGGGAGGAAAAA
Unaligned ( gi|16 ): TAAAATAAGTATCTCTCTCATTATTCATTTACTCGGGATGAAGTGCACAGA
Unaligned ( gi|18 ): TTATACCATACACATGTATAATATGAGTCTGTCACA
Alignments
lowQualScore : 1 3333333 22 1111 11 222222 222222 1111 11 111 111 1111 333333333 1111 111 111 5555555555555555 333333 111 11 2222222 1111 22222222 22222222 1111 22222222222 111
lowQualScore : 0 5555555 1 1 8 55 99 1 7 1111 6 55 888888 99 7 777777 7777 11 0 0 2 99 11 000 66 3 1 5 77 000 5 5 4444 000000000 1 4444 99 111 2 000 2222222222222222 1 5 77 1 77 000000 3 111 5 6 6 00 666 1111111 99 4444 99 44444444 44444444 7777 77777777777 8 444
lowQualScore : . ....... . . . .. .. . . .... . .. ...... .. . ...... .... .. . . . .. .. ... .. . . . .. ... . . .... ......... . .... .. ... . ... ................ . . .. . .. ...... . ... . . . .. ... ....... .. .... .. ........ ........ .... ........... . ...
lowQualScore : 0 2222222 0 0 8 44 22 0 3 8888 7 88 000000 22 3 555555 0000 88 8 7 5 22 11 000 99 6 3 7 99 000 7 7 2222 222222222 0 2222 22 777 5 000 4444444444444444 0 7 99 0 99 222222 2 777 2 7 7 33 888 7777777 22 2222 22 22222222 22222222 0000 00000000000 0 000
consensus : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAAACTCCACAGACC--AATNCAAAAGCAAAAGACAAA--CTAAAAGA-C--AA-TG---AAAT--TAAAAGATAC-----ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---TAA----T----CTAA---GCA-G--ACCTATGCTGAAGTA--ATA-AN---TACTAAA---TAACTTAA-ATAA-AT-GA-T-GCAC-------AT--GGCATATG----CATTAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAGTCTGTCAC
Reference ( family-146 ) : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAAACTCCACAGACC--AATNCAAAAGCAAAAGACAAA--CTAAAAGA-C--AA-TG---AAAT--TAAAAGATAC-----ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---TAA----T----CTAA---GNA-G--ACCTATGCTGAANTA--ATA-AT---TACTAAA---TAACTTAA-ATAA-AT-GA-T-GCAC-------AT--GGCATATG----CATTAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAGTCTGTCAC
gi|1 : AAAGACTGACCACAAAGC----AG-AGAACACTT--GGAGGGAAAAACTCCA-AGACC--AATCCAAAAGAACAAGACAAA--CTAAAACACC--AA-TG---AAAT--TAAAAGACACAGCGGACATTTGGGCAGAGTATAATTATACACCCAAGG--CC---ATTACACTG-----------GGAAACTGA-CCAAATT---TA-A-
gi|10 : actctcactaatcatttactctaggaaggtgctaataaagggattttgtacaaaaattatagattttacatttagtaaaggaattaaagaatatatttgtattagtaataaattattaacttaccaatctagaagaaaatgtcggtctcaaagtctgtttgtcaaaatgtcagatatactcaaatacaacttcctagctcagaaactcaac--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--TTC---TA-A-AAA----TCAAT---------TGGAAATCTGC----AGG--TAAG---CTGAAGTGAGTAGA---TAA----CTCACCTA-----CA-G--ATTTATGCTGAATTA--ATA-AA---TACTAAA---TAAAT-AA-ATAA-ATAGA-T-GCAC-------AT--GGCACATG----CATTAT--GA--------TGC--------ACAcgcttgactgcaggtttaaattatgttaccttgtgtaatgattttattaaacacagtcaattcatatgtgtttgaaatataaatgatgctatatacatgtactatattatataccatatcata
gi|12 : C-AAGAAATCTGTGAGGGTAAAAACTCCACAAACCAGAATAGAAAATGAAAAGACAGAACCTAAAAGA-CCTAA-TGAATAAATAGTAAAAGAT-------ACAATT----AGCAT-GCA-TAGG
gi|13 : AAAAACTGGCTA-GAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACC--AATGCAAAAGCAAA-GACAAA--T--AAAGA-C--AA--------AC--TAA----TA------ACAGTT----AGAATAACATTAGGGCCcagaataaaggcctaattaacgggccgactgacaagg
gi|15 : AGACC--AAGCCAAGAGCACAAAACAAA--CTAATACA-CA-AA-GG---AAAT--TAAAAGACAC-----At
gi|17 : aGTGAGTAGA---TAACTCAT----CT-----GCA-G--ACTTATGCTGAAGTA--Aaaagaccatgaatatacaatataca
gi|3 : AAAGAACTGATTA-AAACCCATAACCAAGAAACGTGTGGAGGGAAAA--TCCACAGACC--AATACAAAAGCAAAAGACAAA--CTAAAAGA-C--AAATG---AAAT--TAAAAGATAC-----ATAGCC----AGACTACAATTAGGGCCCTGAGG--CTA-AAAT---TTAGAC--CTTTTTGGAAATTGA-CC--ATT---TA-A-AGA----TGAATA--------TGGAGATCTGC----AGG--TGAA---CTTAA-TGAGTAGA---TAA----TG---CTAA---GAAAG--GCCTATGCTGAATTA--ATA-AT---TACTAAA---TAACTTTA-ATAA-AT-GA-T-GCAT-------AT--GGCATATA----CAATAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAATCTGTCAC
gi|4 : AAAAAACTGGCTA-GAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACC--AATGCAAAAGCAAA-GACAAA--T--AAAGA-C--AA--------AC--TAA----TA------ACAGTT----AGAATAACATTAGGGCCTTGA-G--CTT-AATT---CTGGAC--C
gi|5 : cacttctcacagttcatttactccacgaaaagtgatgggaattaatcataaatatatacatataattatatactttttatctaattggagaatggagataatgtatttaatagtagtacatgaattaagtattatgcaagaaagggtaaatgtcaaacagtcaaactatatgaattcactatctgaacaA-AATT---CTGGACGTCTTCCTGGAACTTTG-CC--ATTCGGTA-ACAAA----TCAATA--------AGGAGCTCTGCGAGAAGGTTTAAATATCTGAAGTGAGTA------AA----T----TGAA---GCC-GTCACCTAC----AAGGA--CTATGC---TAC-AAATTGTAACTTAAGATAA-AT--A-C-ACACTAGCAAGATAGGGCCTACGACAACAACATCCGA--------TGC--------ACAATA----AAT----ATAAT--A-AAACATTAGAAGCCTGTCAC
gi|6 : ctaGAGGTCCTATAATA---TCGGAC--CTTTCTGGAACTTGGGCC--ATT---TATA-AAA----TCA-TAGAGAGCTTCGGAGCTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---CAA---------CTCACCTGCA-G--ACTTATGTTGAATTA--ATA--------CTAAA---TAACTTAA-ATAA-AT-AAAT-GCAC-------AT--GGCATATG----CATTAT--GA--------TGCACATATGCACAATA----AAT----AT--A--A-AAACAT---GAGTCTGTCACat
gi|7 : G--CTT-AATT---CTGGAC--CTC-CTGGATATGGA-CC--ATT---TA-A-AAAAGAATCAATA--------TCGAGATCTGC----AGG--TAAA---TTGAAG-GAATAGG---TAA----T----TCAACG-GAA-G--ACTTATGCTGAAGTA--CTA-ATTTATGCTAAA---CAATTTTA-ATCATAA-GA-T-GC-C-------AT--GGCGTATG----CATTGT--GATGCACATGTGC--------ACAATA----AAT-----T--T--AGAAAAAT---TAGTCTGTC
gi|8 : gaAC--CTTTCTGGAACTTGA-AC--ATT---TA-A-AAA----TCAATA---------GGAGCTCTGC----AGG--TAAA---TT-AAGTGAGTAGAACTTCA----T----CT-----GCA-G--A-CTATGCTGAAGTAACATA-CA---TACGAAA---TAA-TTAG-ATAA-AT-AA-TGGCAC-------A---GGCATATG----CATTAT--GT--------CGC--------ACCATATGCCAATCAAAAT--TTAA-AAACAT---GATTCTGTCAg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AAAATAAGTACCGATCTCATGATACATTTACTCAGGATAAAGTACACAGAAAATTAATCTTAATATTTAGGATTTACTAAAGATATATATTATCATTAGAAATAAATTAGTAACTTATCCATCAAGAGGAAAAGTCAGTCTCCAGTTGGAATGTCACAAAGGGCTATTTACAGTAAAAAATCAAACATATACATGTACTGATCAGTTTGAAATTCAATACTAATACAAGGGACTCTATTGGAGGAAATAATCCACTAAACTAAAACATCAATTAAATCAAATTAAACCAAGACATAATTAGGGACCTCAGATATTTACTACCGAACTCACCAAGTGTTATGTTTGACTGAGTTTTGAATCAAAGATTCACTGAGGGGTTATATCACTCGATATAAATGTATATACGTAGTAAAATCAAATTAAAATCTGACAAAATAATAATGCAAACATGCATATATGAATTCATTACATGTATATCATA
Unaligned ( gi|9 ): CACTCTCACTGATCATTAACTCTAGGAATGTGCTTATATAAAGGGAATTTATGCAAAAATACATATTTTACATTTAGTAAAGGAATTAACTAATAGATTAGCATTCGTAATAAAATTTTAACTTACCAATTTTGTGGAAAATGTCAGTCTCTATGTATGCTGGTCAAAATGTCAGAAACTCAAATTACAGCT
Unaligned ( gi|11 ): AAGACATAATTAGGGACCTTAGGCACTTGCTACCAGAGGACTAAGAGAACTCACCAAGGTTATGCCTGACCGAATATGGAGTTTAAACCCATTGAAAGGATTGTATTATGAAATACTGAAATCAAATTAAAATCAAATGATGGCAATGCACAAGTGAATGCA
Unaligned ( gi|14 ): TCTGGTTGTCAAGAAATGTCAGCTGGTTTACTCAATTCAACTTTCTCCTCCAAACACTGAACAAAGCCTGACCACAAAGAAAGAACTCTGGGAGGAAAAA
Unaligned ( gi|16 ): TAAAATAAGTATCTCTCTCATTATTCATTTACTCGGGATGAAGTGCACAGA
Unaligned ( gi|18 ): TTATACCATACACATGTATAATATGAGTCTGTCACA
Alignments
lowQualScore : 1 3333333 22 1111 11 222222 222222 1111 11 111 111 1111 333333333 1111 111 111 5555555555555555 222222 111 11 2222222 1111 22222222 22222222 1111 22222222222 111
lowQualScore : 0 5555555 1 1 8 55 99 1 7 1111 6 55 888888 99 7 777777 7777 11 0 0 2 99 11 000 66 3 1 5 77 000 5 5 4444 000000000 1 4444 99 111 2 000 2222222222222222 5 77 0 77 777777 3 111 5 6 6 00 666 1111111 99 4444 99 44444444 44444444 7777 77777777777 8 444
lowQualScore : . ....... . . . .. .. . . .... . .. ...... .. . ...... .... .. . . . .. .. ... .. . . . .. ... . . .... ......... . .... .. ... . ... ................ . .. . .. ...... . ... . . . .. ... ....... .. .... .. ........ ........ .... ........... . ...
lowQualScore : 0 2222222 0 0 8 44 22 0 3 8888 7 88 000000 22 3 555555 0000 88 8 7 5 22 11 000 99 6 3 7 99 000 7 7 2222 222222222 0 2222 22 777 5 000 4444444444444444 7 99 7 99 333333 2 777 2 7 7 33 888 7777777 22 2222 22 22222222 22222222 0000 00000000000 0 000
consensus : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAAACTCCACAGACC--AATNCAAAAGCAAAAGACAAA--CTAAAAGA-C--AA-TG---AAAT--TAAAAGATAC-----ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---TAA----T----CTAA---G-CAG--ACCTATGCTGAAGTA--ATA-A---ATACTAAA---TAACTTAA-ATAA-AT-GA-T-GCAC-------AT--GGCATATG----CATTAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAGTCTGTCAC
Reference ( family-146 ) : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAAACTCCACAGACC--AATNCAAAAGCAAAAGACAAA--CTAAAAGA-C--AA-TG---AAAT--TAAAAGATAC-----ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---TAA----T----CTAA---G-CAG--ACCTATGCTGAAGTA--ATA-A---NTACTAAA---TAACTTAA-ATAA-AT-GA-T-GCAC-------AT--GGCATATG----CATTAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAGTCTGTCAC
gi|1 : AAAGACTGACCACAAAGC----AG-AGAACACTT--GGAGGGAAAAACTCCA-AGACC--AATCCAAAAGAACAAGACAAA--CTAAAACACC--AA-TG---AAAT--TAAAAGACACAGCGGACATTTGGGCAGAGTATAATTATACACCCAAGG--CC---ATTACACTG-----------GGAAACTGA-CCAAATT---TA-A-
gi|10 : actctcactaatcatttactctaggaaggtgctaataaagggattttgtacaaaaattatagattttacatttagtaaaggaattaaagaatatatttgtattagtaataaattattaacttaccaatctagaagaaaatgtcggtctcaaagtctgtttgtcaaaatgtcagatatactcaaatacaacttcctagctcagaaactcaac--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--TTC---TA-A-AAA----TCAAT---------TGGAAATCTGC----AGG--TAAG---CTGAAGTGAGTAGA---TAA----CTCACCTA------CAG--ATTTATGCTGAATTA--ATA-A---ATACTAAA---TAAAT-AA-ATAA-ATAGA-T-GCAC-------AT--GGCACATG----CATTAT--GA--------TGC--------ACAcgcttgactgcaggtttaaattatgttaccttgtgtaatgattttattaaacacagtcaattcatatgtgtttgaaatataaatgatgctatatacatgtactatattatataccatatcata
gi|12 : C-AAGAAATCTGTGAGGGTAAAAACTCCACAAACCAGAATAGAAAATGAAAAGACAGAACCTAAAAGA-CCTAA-TGAATAAATAGTAAAAGAT-------ACAATT----AGCAT-GCA-TAGG
gi|13 : AAAAACTGGCTA-GAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACC--AATGCAAAAGCAAA-GACAAA--T--AAAGA-C--AA--------AC--TAA----TA------ACAGTT----AGAATAACATTAGGGCCcagaataaaggcctaattaacgggccgactgacaagg
gi|15 : AGACC--AAGCCAAGAGCACAAAACAAA--CTAATACA-CA-AA-GG---AAAT--TAAAAGACAC-----At
gi|17 : aGTGAGTAGA---TAACTCAT----CT-----G-CAG--ACTTATGCTGAAGTA--Aaaagaccatgaatatacaatataca
gi|3 : AAAGAACTGATTA-AAACCCATAACCAAGAAACGTGTGGAGGGAAAA--TCCACAGACC--AATACAAAAGCAAAAGACAAA--CTAAAAGA-C--AAATG---AAAT--TAAAAGATAC-----ATAGCC----AGACTACAATTAGGGCCCTGAGG--CTA-AAAT---TTAGAC--CTTTTTGGAAATTGA-CC--ATT---TA-A-AGA----TGAATA--------TGGAGATCTGC----AGG--TGAA---CTTAA-TGAGTAGA---TAA----TG---CTAA---GAAAG--GCCTATGCTGAATTA--ATA-A---TTACTAAA---TAACTTTA-ATAA-AT-GA-T-GCAT-------AT--GGCATATA----CAATAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAATCTGTCAC
gi|4 : AAAAAACTGGCTA-GAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACC--AATGCAAAAGCAAA-GACAAA--T--AAAGA-C--AA--------AC--TAA----TA------ACAGTT----AGAATAACATTAGGGCCTTGA-G--CTT-AATT---CTGGAC--C
gi|5 : cacttctcacagttcatttactccacgaaaagtgatgggaattaatcataaatatatacatataattatatactttttatctaattggagaatggagataatgtatttaatagtagtacatgaattaagtattatgcaagaaagggtaaatgtcaaacagtcaaactatatgaattcactatctgaacaA-AATT---CTGGACGTCTTCCTGGAACTTTG-CC--ATTCGGTA-ACAAA----TCAATA--------AGGAGCTCTGCGAGAAGGTTTAAATATCTGAAGTGAGTA------AA----T----TGAA---G-CCGTCACCTAC----AAGGA--CTATG---CTAC-AAATTGTAACTTAAGATAA-AT--A-C-ACACTAGCAAGATAGGGCCTACGACAACAACATCCGA--------TGC--------ACAATA----AAT----ATAAT--A-AAACATTAGAAGCCTGTCAC
gi|6 : ctaGAGGTCCTATAATA---TCGGAC--CTTTCTGGAACTTGGGCC--ATT---TATA-AAA----TCA-TAGAGAGCTTCGGAGCTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---CAA---------CTCACCTG-CAG--ACTTATGTTGAATTA--ATA--------CTAAA---TAACTTAA-ATAA-AT-AAAT-GCAC-------AT--GGCATATG----CATTAT--GA--------TGCACATATGCACAATA----AAT----AT--A--A-AAACAT---GAGTCTGTCACat
gi|7 : G--CTT-AATT---CTGGAC--CTC-CTGGATATGGA-CC--ATT---TA-A-AAAAGAATCAATA--------TCGAGATCTGC----AGG--TAAA---TTGAAG-GAATAGG---TAA----T----TCAACG-G-AAG--ACTTATGCTGAAGTA--CTA-ATTTATGCTAAA---CAATTTTA-ATCATAA-GA-T-GC-C-------AT--GGCGTATG----CATTGT--GATGCACATGTGC--------ACAATA----AAT-----T--T--AGAAAAAT---TAGTCTGTC
gi|8 : gaAC--CTTTCTGGAACTTGA-AC--ATT---TA-A-AAA----TCAATA---------GGAGCTCTGC----AGG--TAAA---TT-AAGTGAGTAGAACTTCA----T----CT-----G-CAG--A-CTATGCTGAAGTAACATA-C---ATACGAAA---TAA-TTAG-ATAA-AT-AA-TGGCAC-------A---GGCATATG----CATTAT--GT--------CGC--------ACCATATGCCAATCAAAAT--TTAA-AAACAT---GATTCTGTCAg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AAAATAAGTACCGATCTCATGATACATTTACTCAGGATAAAGTACACAGAAAATTAATCTTAATATTTAGGATTTACTAAAGATATATATTATCATTAGAAATAAATTAGTAACTTATCCATCAAGAGGAAAAGTCAGTCTCCAGTTGGAATGTCACAAAGGGCTATTTACAGTAAAAAATCAAACATATACATGTACTGATCAGTTTGAAATTCAATACTAATACAAGGGACTCTATTGGAGGAAATAATCCACTAAACTAAAACATCAATTAAATCAAATTAAACCAAGACATAATTAGGGACCTCAGATATTTACTACCGAACTCACCAAGTGTTATGTTTGACTGAGTTTTGAATCAAAGATTCACTGAGGGGTTATATCACTCGATATAAATGTATATACGTAGTAAAATCAAATTAAAATCTGACAAAATAATAATGCAAACATGCATATATGAATTCATTACATGTATATCATA
Unaligned ( gi|9 ): CACTCTCACTGATCATTAACTCTAGGAATGTGCTTATATAAAGGGAATTTATGCAAAAATACATATTTTACATTTAGTAAAGGAATTAACTAATAGATTAGCATTCGTAATAAAATTTTAACTTACCAATTTTGTGGAAAATGTCAGTCTCTATGTATGCTGGTCAAAATGTCAGAAACTCAAATTACAGCT
Unaligned ( gi|11 ): AAGACATAATTAGGGACCTTAGGCACTTGCTACCAGAGGACTAAGAGAACTCACCAAGGTTATGCCTGACCGAATATGGAGTTTAAACCCATTGAAAGGATTGTATTATGAAATACTGAAATCAAATTAAAATCAAATGATGGCAATGCACAAGTGAATGCA
Unaligned ( gi|14 ): TCTGGTTGTCAAGAAATGTCAGCTGGTTTACTCAATTCAACTTTCTCCTCCAAACACTGAACAAAGCCTGACCACAAAGAAAGAACTCTGGGAGGAAAAA
Unaligned ( gi|16 ): TAAAATAAGTATCTCTCTCATTATTCATTTACTCGGGATGAAGTGCACAGA
Unaligned ( gi|18 ): TTATACCATACACATGTATAATATGAGTCTGTCACA
Alignments
lowQualScore : 1 3333333 22 1111 11 222222 222222 1111 11 111 111 1111 333333333 1111 111 111 5555555555555555 1111 1111 11 2222222 1111 22222222 22222222 1111 22222222222 111
lowQualScore : 0 5555555 1 1 8 55 99 1 7 1111 6 55 888888 99 7 777777 7777 11 0 0 2 99 11 000 66 3 1 5 77 000 5 5 4444 000000000 1 4444 99 111 2 000 2222222222222222 5 77 0 77 8888 6 4444 5 6 6 00 666 1111111 99 4444 99 44444444 44444444 7777 77777777777 8 444
lowQualScore : . ....... . . . .. .. . . .... . .. ...... .. . ...... .... .. . . . .. .. ... .. . . . .. ... . . .... ......... . .... .. ... . ... ................ . .. . .. .... . .... . . . .. ... ....... .. .... .. ........ ........ .... ........... . ...
lowQualScore : 0 2222222 0 0 8 44 22 0 3 8888 7 88 000000 22 3 555555 0000 88 8 7 5 22 11 000 99 6 3 7 99 000 7 7 2222 222222222 0 2222 22 777 5 000 4444444444444444 7 99 7 99 8888 7 2222 2 7 7 33 888 7777777 22 2222 22 22222222 22222222 0000 00000000000 0 000
consensus : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAAACTCCACAGACC--AATNCAAAAGCAAAAGACAAA--CTAAAAGA-C--AA-TG---AAAT--TAAAAGATAC-----ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---TAA----T----CTAA---G-CAG--ACCTATGCTGAAGTA--ATAA---ATACTA-AA----TAACTTAA-ATAA-AT-GA-T-GCAC-------AT--GGCATATG----CATTAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAGTCTGTCAC
Reference ( family-146 ) : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAAACTCCACAGACC--AATNCAAAAGCAAAAGACAAA--CTAAAAGA-C--AA-TG---AAAT--TAAAAGATAC-----ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---TAA----T----CTAA---G-CAG--ACCTATGCTGAAGTA--ATAA---ATACTA-AA----TAACTTAA-ATAA-AT-GA-T-GCAC-------AT--GGCATATG----CATTAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAGTCTGTCAC
gi|1 : AAAGACTGACCACAAAGC----AG-AGAACACTT--GGAGGGAAAAACTCCA-AGACC--AATCCAAAAGAACAAGACAAA--CTAAAACACC--AA-TG---AAAT--TAAAAGACACAGCGGACATTTGGGCAGAGTATAATTATACACCCAAGG--CC---ATTACACTG-----------GGAAACTGA-CCAAATT---TA-A-
gi|10 : actctcactaatcatttactctaggaaggtgctaataaagggattttgtacaaaaattatagattttacatttagtaaaggaattaaagaatatatttgtattagtaataaattattaacttaccaatctagaagaaaatgtcggtctcaaagtctgtttgtcaaaatgtcagatatactcaaatacaacttcctagctcagaaactcaac--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--TTC---TA-A-AAA----TCAAT---------TGGAAATCTGC----AGG--TAAG---CTGAAGTGAGTAGA---TAA----CTCACCTA------CAG--ATTTATGCTGAATTA--ATAA---ATACTA-AA----TAAA-TAA-ATAA-ATAGA-T-GCAC-------AT--GGCACATG----CATTAT--GA--------TGC--------ACAcgcttgactgcaggtttaaattatgttaccttgtgtaatgattttattaaacacagtcaattcatatgtgtttgaaatataaatgatgctatatacatgtactatattatataccatatcata
gi|12 : C-AAGAAATCTGTGAGGGTAAAAACTCCACAAACCAGAATAGAAAATGAAAAGACAGAACCTAAAAGA-CCTAA-TGAATAAATAGTAAAAGAT-------ACAATT----AGCAT-GCA-TAGG
gi|13 : AAAAACTGGCTA-GAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACC--AATGCAAAAGCAAA-GACAAA--T--AAAGA-C--AA--------AC--TAA----TA------ACAGTT----AGAATAACATTAGGGCCcagaataaaggcctaattaacgggccgactgacaagg
gi|15 : AGACC--AAGCCAAGAGCACAAAACAAA--CTAATACA-CA-AA-GG---AAAT--TAAAAGACAC-----At
gi|17 : aGTGAGTAGA---TAACTCAT----CT-----G-CAG--ACTTATGCTGAAGTA--Aaaagaccatgaatatacaatataca
gi|3 : AAAGAACTGATTA-AAACCCATAACCAAGAAACGTGTGGAGGGAAAA--TCCACAGACC--AATACAAAAGCAAAAGACAAA--CTAAAAGA-C--AAATG---AAAT--TAAAAGATAC-----ATAGCC----AGACTACAATTAGGGCCCTGAGG--CTA-AAAT---TTAGAC--CTTTTTGGAAATTGA-CC--ATT---TA-A-AGA----TGAATA--------TGGAGATCTGC----AGG--TGAA---CTTAA-TGAGTAGA---TAA----TG---CTAA---GAAAG--GCCTATGCTGAATTA--ATAA---TTACTA-AA----TAACTTTA-ATAA-AT-GA-T-GCAT-------AT--GGCATATA----CAATAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAATCTGTCAC
gi|4 : AAAAAACTGGCTA-GAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACC--AATGCAAAAGCAAA-GACAAA--T--AAAGA-C--AA--------AC--TAA----TA------ACAGTT----AGAATAACATTAGGGCCTTGA-G--CTT-AATT---CTGGAC--C
gi|5 : cacttctcacagttcatttactccacgaaaagtgatgggaattaatcataaatatatacatataattatatactttttatctaattggagaatggagataatgtatttaatagtagtacatgaattaagtattatgcaagaaagggtaaatgtcaaacagtcaaactatatgaattcactatctgaacaA-AATT---CTGGACGTCTTCCTGGAACTTTG-CC--ATTCGGTA-ACAAA----TCAATA--------AGGAGCTCTGCGAGAAGGTTTAAATATCTGAAGTGAGTA------AA----T----TGAA---G-CCGTCACCTAC----AAGGA--CT-----ATGCTACAAATTGTAACTTAAGATAA-AT--A-C-ACACTAGCAAGATAGGGCCTACGACAACAACATCCGA--------TGC--------ACAATA----AAT----ATAAT--A-AAACATTAGAAGCCTGTCAC
gi|6 : ctaGAGGTCCTATAATA---TCGGAC--CTTTCTGGAACTTGGGCC--ATT---TATA-AAA----TCA-TAGAGAGCTTCGGAGCTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---CAA---------CTCACCTG-CAG--ACTTATGTTGAATTA--ATA-------CTA-AA----TAACTTAA-ATAA-AT-AAAT-GCAC-------AT--GGCATATG----CATTAT--GA--------TGCACATATGCACAATA----AAT----AT--A--A-AAACAT---GAGTCTGTCACat
gi|7 : G--CTT-AATT---CTGGAC--CTC-CTGGATATGGA-CC--ATT---TA-A-AAAAGAATCAATA--------TCGAGATCTGC----AGG--TAAA---TTGAAG-GAATAGG---TAA----T----TCAACG-G-AAG--ACTTATGCTGAAGTA--CTAATTTATGCTA-AA----CAATTTTA-ATCATAA-GA-T-GC-C-------AT--GGCGTATG----CATTGT--GATGCACATGTGC--------ACAATA----AAT-----T--T--AGAAAAAT---TAGTCTGTC
gi|8 : gaAC--CTTTCTGGAACTTGA-AC--ATT---TA-A-AAA----TCAATA---------GGAGCTCTGC----AGG--TAAA---TT-AAGTGAGTAGAACTTCA----T----CT-----G-CAG--A-CTATGCTGAAGTAACATAC---ATACGA-AA----TAA-TTAG-ATAA-AT-AA-TGGCAC-------A---GGCATATG----CATTAT--GT--------CGC--------ACCATATGCCAATCAAAAT--TTAA-AAACAT---GATTCTGTCAg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AAAATAAGTACCGATCTCATGATACATTTACTCAGGATAAAGTACACAGAAAATTAATCTTAATATTTAGGATTTACTAAAGATATATATTATCATTAGAAATAAATTAGTAACTTATCCATCAAGAGGAAAAGTCAGTCTCCAGTTGGAATGTCACAAAGGGCTATTTACAGTAAAAAATCAAACATATACATGTACTGATCAGTTTGAAATTCAATACTAATACAAGGGACTCTATTGGAGGAAATAATCCACTAAACTAAAACATCAATTAAATCAAATTAAACCAAGACATAATTAGGGACCTCAGATATTTACTACCGAACTCACCAAGTGTTATGTTTGACTGAGTTTTGAATCAAAGATTCACTGAGGGGTTATATCACTCGATATAAATGTATATACGTAGTAAAATCAAATTAAAATCTGACAAAATAATAATGCAAACATGCATATATGAATTCATTACATGTATATCATA
Unaligned ( gi|9 ): CACTCTCACTGATCATTAACTCTAGGAATGTGCTTATATAAAGGGAATTTATGCAAAAATACATATTTTACATTTAGTAAAGGAATTAACTAATAGATTAGCATTCGTAATAAAATTTTAACTTACCAATTTTGTGGAAAATGTCAGTCTCTATGTATGCTGGTCAAAATGTCAGAAACTCAAATTACAGCT
Unaligned ( gi|11 ): AAGACATAATTAGGGACCTTAGGCACTTGCTACCAGAGGACTAAGAGAACTCACCAAGGTTATGCCTGACCGAATATGGAGTTTAAACCCATTGAAAGGATTGTATTATGAAATACTGAAATCAAATTAAAATCAAATGATGGCAATGCACAAGTGAATGCA
Unaligned ( gi|14 ): TCTGGTTGTCAAGAAATGTCAGCTGGTTTACTCAATTCAACTTTCTCCTCCAAACACTGAACAAAGCCTGACCACAAAGAAAGAACTCTGGGAGGAAAAA
Unaligned ( gi|16 ): TAAAATAAGTATCTCTCTCATTATTCATTTACTCGGGATGAAGTGCACAGA
Unaligned ( gi|18 ): TTATACCATACACATGTATAATATGAGTCTGTCACA
Alignments
lowQualScore : 1 3333333 22 1111 11 222222 222222 1111 11 111 111 1111 333333333 1111 111 111 5555555555555555 1111 1111 11 2222222 1111 22222222 22222222 1111 22222222222 111
lowQualScore : 0 5555555 1 1 8 55 99 1 7 1111 6 55 888888 99 7 777777 7777 11 0 0 2 99 11 000 66 3 1 5 77 000 5 5 4444 000000000 1 4444 99 111 2 000 2222222222222222 5 77 0 77 8888 6 4444 5 6 6 00 666 1111111 99 4444 99 44444444 44444444 7777 77777777777 8 444
lowQualScore : . ....... . . . .. .. . . .... . .. ...... .. . ...... .... .. . . . .. .. ... .. . . . .. ... . . .... ......... . .... .. ... . ... ................ . .. . .. .... . .... . . . .. ... ....... .. .... .. ........ ........ .... ........... . ...
lowQualScore : 0 2222222 0 0 8 44 22 0 3 8888 7 88 000000 22 3 555555 0000 88 8 7 5 22 11 000 99 6 3 7 99 000 7 7 2222 222222222 0 2222 22 777 5 000 4444444444444444 7 99 7 99 8888 7 2222 2 7 7 33 888 7777777 22 2222 22 22222222 22222222 0000 00000000000 0 000
consensus : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAAACTCCACAGACC--AATNCAAAAGCAAAAGACAAA--CTAAAAGA-C--AA-TG---AAAT--TAAAAGATAC-----ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---TAA----T----CTAA---G-CAG--ACCTATGCTGAAGTA--ATAA---ATACTA-AA----TAACTTAA-ATAA-AT-GA-T-GCAC-------AT--GGCATATG----CATTAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAGTCTGTCAC
Reference ( family-146 ) : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAAACTCCACAGACC--AATNCAAAAGCAAAAGACAAA--CTAAAAGA-C--AA-TG---AAAT--TAAAAGATAC-----ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---TAA----T----CTAA---G-CAG--ACCTATGCTGAAGTA--ATAA---ATACTA-AA----TAACTTAA-ATAA-AT-GA-T-GCAC-------AT--GGCATATG----CATTAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAGTCTGTCAC
gi|1 : AAAGACTGACCACAAAGC----AG-AGAACACTT--GGAGGGAAAAACTCCA-AGACC--AATCCAAAAGAACAAGACAAA--CTAAAACACC--AA-TG---AAAT--TAAAAGACACAGCGGACATTTGGGCAGAGTATAATTATACACCCAAGG--CC---ATTACACTG-----------GGAAACTGA-CCAAATT---TA-A-
gi|10 : actctcactaatcatttactctaggaaggtgctaataaagggattttgtacaaaaattatagattttacatttagtaaaggaattaaagaatatatttgtattagtaataaattattaacttaccaatctagaagaaaatgtcggtctcaaagtctgtttgtcaaaatgtcagatatactcaaatacaacttcctagctcagaaactcaac--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--TTC---TA-A-AAA----TCAAT---------TGGAAATCTGC----AGG--TAAG---CTGAAGTGAGTAGA---TAA----CTCACCTA------CAG--ATTTATGCTGAATTA--ATAA---ATACTA-AA----TAAA-TAA-ATAA-ATAGA-T-GCAC-------AT--GGCACATG----CATTAT--GA--------TGC--------ACAcgcttgactgcaggtttaaattatgttaccttgtgtaatgattttattaaacacagtcaattcatatgtgtttgaaatataaatgatgctatatacatgtactatattatataccatatcata
gi|12 : C-AAGAAATCTGTGAGGGTAAAAACTCCACAAACCAGAATAGAAAATGAAAAGACAGAACCTAAAAGA-CCTAA-TGAATAAATAGTAAAAGAT-------ACAATT----AGCAT-GCA-TAGG
gi|13 : AAAAACTGGCTA-GAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACC--AATGCAAAAGCAAA-GACAAA--T--AAAGA-C--AA--------AC--TAA----TA------ACAGTT----AGAATAACATTAGGGCCcagaataaaggcctaattaacgggccgactgacaagg
gi|15 : AGACC--AAGCCAAGAGCACAAAACAAA--CTAATACA-CA-AA-GG---AAAT--TAAAAGACAC-----At
gi|17 : aGTGAGTAGA---TAACTCAT----CT-----G-CAG--ACTTATGCTGAAGTA--Aaaagaccatgaatatacaatataca
gi|3 : AAAGAACTGATTA-AAACCCATAACCAAGAAACGTGTGGAGGGAAAA--TCCACAGACC--AATACAAAAGCAAAAGACAAA--CTAAAAGA-C--AAATG---AAAT--TAAAAGATAC-----ATAGCC----AGACTACAATTAGGGCCCTGAGG--CTA-AAAT---TTAGAC--CTTTTTGGAAATTGA-CC--ATT---TA-A-AGA----TGAATA--------TGGAGATCTGC----AGG--TGAA---CTTAA-TGAGTAGA---TAA----TG---CTAA---GAAAG--GCCTATGCTGAATTA--ATAA---TTACTA-AA----TAACTTTA-ATAA-AT-GA-T-GCAT-------AT--GGCATATA----CAATAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAATCTGTCAC
gi|4 : AAAAAACTGGCTA-GAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACC--AATGCAAAAGCAAA-GACAAA--T--AAAGA-C--AA--------AC--TAA----TA------ACAGTT----AGAATAACATTAGGGCCTTGA-G--CTT-AATT---CTGGAC--C
gi|5 : cacttctcacagttcatttactccacgaaaagtgatgggaattaatcataaatatatacatataattatatactttttatctaattggagaatggagataatgtatttaatagtagtacatgaattaagtattatgcaagaaagggtaaatgtcaaacagtcaaactatatgaattcactatctgaacaA-AATT---CTGGACGTCTTCCTGGAACTTTG-CC--ATTCGGTA-ACAAA----TCAATA--------AGGAGCTCTGCGAGAAGGTTTAAATATCTGAAGTGAGTA------AA----T----TGAA---G-CCGTCACCTAC----AAGGA--CT-----ATGCTACAAATTGTAACTTAAGATAA-AT--A-C-ACACTAGCAAGATAGGGCCTACGACAACAACATCCGA--------TGC--------ACAATA----AAT----ATAAT--A-AAACATTAGAAGCCTGTCAC
gi|6 : ctaGAGGTCCTATAATA---TCGGAC--CTTTCTGGAACTTGGGCC--ATT---TATA-AAA----TCA-TAGAGAGCTTCGGAGCTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---CAA---------CTCACCTG-CAG--ACTTATGTTGAATTA--ATA-------CTA-AA----TAACTTAA-ATAA-AT-AAAT-GCAC-------AT--GGCATATG----CATTAT--GA--------TGCACATATGCACAATA----AAT----AT--A--A-AAACAT---GAGTCTGTCACat
gi|7 : G--CTT-AATT---CTGGAC--CTC-CTGGATATGGA-CC--ATT---TA-A-AAAAGAATCAATA--------TCGAGATCTGC----AGG--TAAA---TTGAAG-GAATAGG---TAA----T----TCAACG-G-AAG--ACTTATGCTGAAGTA--CTAATTTATGCTA-AA----CAATTTTA-ATCATAA-GA-T-GC-C-------AT--GGCGTATG----CATTGT--GATGCACATGTGC--------ACAATA----AAT-----T--T--AGAAAAAT---TAGTCTGTC
gi|8 : gaAC--CTTTCTGGAACTTGA-AC--ATT---TA-A-AAA----TCAATA---------GGAGCTCTGC----AGG--TAAA---TT-AAGTGAGTAGAACTTCA----T----CT-----G-CAG--A-CTATGCTGAAGTAACATAC---ATACGA-AA----TAA-TTAG-ATAA-AT-AA-TGGCAC-------A---GGCATATG----CATTAT--GT--------CGC--------ACCATATGCCAATCAAAAT--TTAA-AAACAT---GATTCTGTCAg
blockSeqs : . CATAACC G A G AC AG A A ACCT . CT TGAAT AG A C . AA G TC AT . GT T A G . CGG T C AGAA GAGAGCTTC A GAGA TT TAT T ACT CTCATCT A TC AC ATTT C ATTG C G T G AT TAGCAAG AG ACAA CC TGCACATG ACATATGC TGCC CAAAATTTA G TAG
blockSeqs : . A T T T . . G A CT . A ATG . A C . AC G . A . . T A . . . . . . T C . . . G . CTCACCT . . . A . . C . . A TG . . . . . . . ATAAT . .
blockSeqs : . A G A G . . C A CT . . GG . A . . AA . . A . . C C . . . . . . A C . . . G . TTCAACG . . . C . . C . . G T . . . . . . . ATA . .
blockSeqs : T T T . . A . T . . . . . . . G . T . . T C . . . . . . T A . . . G . TGCTAA . . . . . . T . . A C . . . . . . . TT . .
blockSeqs : . G . T . . . . . . . A . . T A . . . . . . . C . . . . . TTGAA . . . . . . . . . . T . . . . . .
blockSeqs : T . . . C . . . . . . TCT . . .
blockSeqs : .
blockSeqCons : ** CT** NGG*** ****** **** A* *** ** CTNACN********** A*** G* ATA********
originalCons : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAAACTCCACAGACC--AATNCAAAAGCAAAAGACAAA--CTAAAAGA-C--AA-TG---AAAT--TAAAAGATAC-----ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---TAA----T----CTAA---G-CAG--ACCTATGCTGAAGTA--ATAA---ATACTA-AA----TAACTTAA-ATAA-AT-GA-T-GCAC-------AT--GGCATATG----CATTAT--GA--------TGC--------ACAATA----AAT----AT--T--A-AAACAT---GAGTCTGTCAC
finalCons : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAA--TCCACAGACC--AATNCAAAAGCAAAAGACAAACT--AAAAGA-C--AANGG---AAAT--TAAAAGATA------ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGA---TAACTNACN----------G-CAG--ACCTATGCTGAAGTA--ATAA---ATACTA-AA----TAACTTAA-ATAA-ATG-A-T-GCAC-------AT--GGCATATG----CATTAT--GA--------TGC--------ACAATA----AATATA--------A-AAACAT---GAGTCTGTCAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AAAATAAGTACCGATCTCATGATACATTTACTCAGGATAAAGTACACAGAAAATTAATCTTAATATTTAGGATTTACTAAAGATATATATTATCATTAGAAATAAATTAGTAACTTATCCATCAAGAGGAAAAGTCAGTCTCCAGTTGGAATGTCACAAAGGGCTATTTACAGTAAAAAATCAAACATATACATGTACTGATCAGTTTGAAATTCAATACTAATACAAGGGACTCTATTGGAGGAAATAATCCACTAAACTAAAACATCAATTAAATCAAATTAAACCAAGACATAATTAGGGACCTCAGATATTTACTACCGAACTCACCAAGTGTTATGTTTGACTGAGTTTTGAATCAAAGATTCACTGAGGGGTTATATCACTCGATATAAATGTATATACGTAGTAAAATCAAATTAAAATCTGACAAAATAATAATGCAAACATGCATATATGAATTCATTACATGTATATCATA
Unaligned ( gi|9 ): CACTCTCACTGATCATTAACTCTAGGAATGTGCTTATATAAAGGGAATTTATGCAAAAATACATATTTTACATTTAGTAAAGGAATTAACTAATAGATTAGCATTCGTAATAAAATTTTAACTTACCAATTTTGTGGAAAATGTCAGTCTCTATGTATGCTGGTCAAAATGTCAGAAACTCAAATTACAGCT
Unaligned ( gi|11 ): AAGACATAATTAGGGACCTTAGGCACTTGCTACCAGAGGACTAAGAGAACTCACCAAGGTTATGCCTGACCGAATATGGAGTTTAAACCCATTGAAAGGATTGTATTATGAAATACTGAAATCAAATTAAAATCAAATGATGGCAATGCACAAGTGAATGCA
Unaligned ( gi|14 ): TCTGGTTGTCAAGAAATGTCAGCTGGTTTACTCAATTCAACTTTCTCCTCCAAACACTGAACAAAGCCTGACCACAAAGAAAGAACTCTGGGAGGAAAAA
Unaligned ( gi|16 ): TAAAATAAGTATCTCTCTCATTATTCATTTACTCGGGATGAAGTGCACAGA
Unaligned ( gi|18 ): TTATACCATACACATGTATAATATGAGTCTGTCACA
Alignments
lowQualScore : 1 3333333 22 1111 444444444 222222 1111 11 111 111 1111 333333333 1111 111 111 2222222222222 1111 11 2222222 1111 444444444444444444 22222222 11 11 111
lowQualScore : 0 5555555 1 1 8 22 99 1 7 1111 222222222 99 7 555555 7777 11 0 0 2 99 11 000 66 3 1 5 77 000 5 5 4444 000000000 1 4444 99 111 2 0 000 9999999999999 5 3 4 77 4444 5 5 6 6 00 666 1111111 99 4444 99 111111111111111111 44444444 11 1 11 444
lowQualScore : . ....... . . . .. .. . . .... ......... .. . ...... .... .. . . . .. .. ... .. . . . .. ... . . .... ......... . .... .. ... . . ... ............. . . . .. .... . . . . .. ... ....... .. .... .. .................. ........ .. . .. ...
lowQualScore : 0 2222222 0 0 8 00 22 0 3 8888 000000000 22 3 888888 0000 88 8 7 5 22 11 000 99 6 3 7 99 000 7 7 2222 222222222 0 2222 22 777 5 1 000 1111111111111 7 0 3 99 8888 7 2 7 7 33 888 7777777 22 2222 22 888888888888888888 22222222 00 4 00 000
consensus : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAAACTCCACAGACCA--ATNCAAAAGCAAAAGACAAA--CTAAAAGAC--AAA-G--AAAT--TAAAAGATA------ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGAT---AA--C--T-CACCT-GC-AGACCTATGCTGAANTA--ATAA---ATACTAAATAACTTAA-ATAA-AT-GA-T-GCAC-------AT--GGCATATG----CATTAT--G---------A--------TGC--------ACAAT--AAATATA--AAAACAT---GAGTCTGTCAC
Reference ( family-146 ) : AAAAAACTGGCTA-GAACC----AC-AANANACTTNTGGAGGGAAAA--TCCACAGACCA--ATNCAAAAGCAAAAGACAAA--CTAAAAGAC--AANGG--AAAT--TAAAAGATA------ACAGTT----AGAATANCATTAGGGCCCCGAGG--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--ATT---TA-A-AAA----TCAATA--------TGGAGNTCTGC----AGG--TAAA---CTGAAGTGAGTAGAT---AA--C--T-NA-CN-GC-AGACCTATGCTGAAGTA--ATAA---ATACTAAATAACTTAA-ATAA-AT-GA-T-GCAC-------AT--GGCATATG----CATTAT--G---------A--------TGC--------ACAAT--AAATATA--AAAACAT---GAGTCTGTCAC
gi|1 : AAAGACTGACCACAAAGC----AG-AGAACACTT--GGAGGGAAAAACTCCA-AGACCA--ATCCAAAAGAACAAGACAAA--CTAAAACAC--CAATG--AAAT--TAAAAGACACAGCGGACATTTGGGCAGAGTATAATTATACACCCAAGG--CC---ATTACACTG-----------GGAAACTGA-CCAAATT---TA-A-
gi|10 : actctcactaatcatttactctaggaaggtgctaataaagggattttgtacaaaaattatagattttacatttagtaaaggaattaaagaatatatttgtattagtaataaattattaacttaccaatctagaagaaaatgtcggtctcaaagtctgtttgtcaaaatgtcagatatactcaaatacaacttcctagctcagaaactcaac--CTA-AATT---CTGGAC--CTTTCTGGAAATTGA-CC--TTC---TA-A-AAA----TCAAT---------TGGAAATCTGC----AGG--TAAG---CTGAAGTGAGTAGAT---AA--C--T-CACCT-AC-AGATTTATGCTGAATTA--ATAA---ATACTAAATAAA-TAA-ATAA-ATAGA-T-GCAC-------AT--GGCACATG----CATTAT--G---------A--------TGC--------ACAcgcttgactgcaggtttaaattatgttaccttgtgtaatgattttattaaacacagtcaattcatatgtgtttgaaatataaatgatgctatatacatgtactatattatataccatatcata
gi|12 : C-AAGAAATCTGTGAGGGTAAAAACTCCACAAACCAGAATAGAAAATGAAAAGACAGAACCTAAAAGACCTAATGAATAAATAGTAAAAGAT-------ACAATT----AGCAT-GCA-TAGG
gi|13 : AAAAACTGGCTA-GAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACCA--ATGCAAAAGC-AAAGACAAA--T--AAAGAC---------AAAC--TA----ATA------ACAGTT----AGAATAACATTAGGGCCcagaataaaggcctaattaacgggccgactgacaagg
gi|15 : AGACCA--AGCCAAGAGCACAAAACAAA--CTAATACAC--AAAGG--AAAT--TAAAAGACA------t
gi|17 : aGTGAGTAGAT---AA--C--T-CATCT-GC-AGACTTATGCTGAAGTA--Acaaaagaccatgaatatacaatataca
gi|3 : AAAGAACTGATTA-AAACCCATAACCAAGAAACGTGTGGAGGGAAAA--TCCACAGACCA--ATACAAAAGCAAAAGACAAA--CTAAAAGAC--AAATG--AAAT--TAAAAGATAC-----ATAGCC----AGACTACAATTAGGGCCCTGAGG--CTA-AAAT---TTAGAC--CTTTTTGGAAATTGA-CC--ATT---TA-A-AGA----TGAATA--------TGGAGATCTGC----AGG--TGAA---CTTAA-TGAGTAGAT---AATGC--T-AA--G-AA-AGGCCTATGCTGAATTA--ATAA---TTACTAAATAACTTTA-ATAA-AT-GA-T-GCAT-------AT--GGCATATA----CAATAT--G---------A--------TGC--------ACAAT--AAATATT--AAAACAT---GAATCTGTCAC
gi|4 : AAAAAACTGGCTA-GAACC----A--AATATACTTTTGGAGGGAAAA--TTCACAGACCA--ATGCAAAAGC-AAAGACAAA--T--AAAGAC---------AAAC--TA----ATA------ACAGTT----AGAATAACATTAGGGCCTTGA-G--CTT-AATT---CTGGAC--C
gi|5 : cacttctcacagttcatttactccacgaaaagtgatgggaattaatcataaatatatacatataattatatactttttatctaattggagaatggagataatgtatttaatagtagtacatgaattaagtattatgcaagaaagggtaaatgtcaaacagtcaaactatatgaattcactatctgaacaA-AATT---CTGGACGTCTTCCTGGAACTTTG-CC--ATTCGGTA-ACAAA----TCAATA--------AGGAGCTCTGCGAGAAGGTTTAAATATCTGAAGTGAGTAAATTGAAG--CCGT-CACCT-ACAAGGACTATGCT--------ACAA---AT--T--GTAACTTAAGATAA-AT--A-C-ACACTAGCAAGATAGGGCCTACGACAACAACATCCG---------A--------TGC--------ACAAT--AAATATAATAAAACATTAGAAGCCTGTCAC
gi|6 : ctaGAGGTCCTATAATA---TCGGAC--CTTTCTGGAACTTGGGCC--ATT---TATA-AAA----TCA-TAGAGAGCTTCGGAGCTCTGC----AGG--TAAA---CTGAAGTGAGTAGAC---AA--C--T-CA-CCTGC-AGACTTATGTTGAATTA--ATA-------CTAAATAACTTAA-ATAA-AT-AAAT-GCAC-------AT--GGCATATG----CATTAT--G---------A--------TGCACATATGCACAAT--AAATATA--AAAACAT---GAGTCTGTCACat
gi|7 : G--CTT-AATT---CTGGAC--CTC-CTGGATATGGA-CC--ATT---TA-A-AAAAGAATCAATA--------TCGAGATCTGC----AGG--TAAA---TTGAAG-GAATAGGT---AA--T--TCAA-CG-GA-AGACTTATGCTGAAGTA--CTAATTTATGCTAAACAATTTTA-ATCATAA-GA-T-GC-C-------AT--GGCGTATG----CATTGT--G---------ATGCACATGTGC--------ACAAT--AAATTTA--GAAAAAT---TAGTCTGTC
gi|8 : gaAC--CTTTCTGGAACTTGA-AC--ATT---TA-A-AAA----TCAATA---------GGAGCTCTGC----AGG--TAAA---TT-AAGTGAGTAG-----AA--CT-T-CATCT-GC-AGA-CTATGCTGAAGTAACATAC---ATACGAAATAA-TTAG-ATAA-AT-AA-TGGCAC-------A---GGCATATG----CATTAT--GTCGCACCATA--------TGC---------CAATCAAAATTTA--AAAACAT---GATTCTGTCAg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AAAATAAGTACCGATCTCATGATACATTTACTCAGGATAAAGTACACAGAAAATTAATCTTAATATTTAGGATTTACTAAAGATATATATTATCATTAGAAATAAATTAGTAACTTATCCATCAAGAGGAAAAGTCAGTCTCCAGTTGGAATGTCACAAAGGGCTATTTACAGTAAAAAATCAAACATATACATGTACTGATCAGTTTGAAATTCAATACTAATACAAGGGACTCTATTGGAGGAAATAATCCACTAAACTAAAACATCAATTAAATCAAATTAAACCAAGACATAATTAGGGACCTCAGATATTTACTACCGAACTCACCAAGTGTTATGTTTGACTGAGTTTTGAATCAAAGATTCACTGAGGGGTTATATCACTCGATATAAATGTATATACGTAGTAAAATCAAATTAAAATCTGACAAAATAATAATGCAAACATGCATATATGAATTCATTACATGTATATCATA
Unaligned ( gi|9 ): CACTCTCACTGATCATTAACTCTAGGAATGTGCTTATATAAAGGGAATTTATGCAAAAATACATATTTTACATTTAGTAAAGGAATTAACTAATAGATTAGCATTCGTAATAAAATTTTAACTTACCAATTTTGTGGAAAATGTCAGTCTCTATGTATGCTGGTCAAAATGTCAGAAACTCAAATTACAGCT
Unaligned ( gi|11 ): AAGACATAATTAGGGACCTTAGGCACTTGCTACCAGAGGACTAAGAGAACTCACCAAGGTTATGCCTGACCGAATATGGAGTTTAAACCCATTGAAAGGATTGTATTATGAAATACTGAAATCAAATTAAAATCAAATGATGGCAATGCACAAGTGAATGCA
Unaligned ( gi|14 ): TCTGGTTGTCAAGAAATGTCAGCTGGTTTACTCAATTCAACTTTCTCCTCCAAACACTGAACAAAGCCTGACCACAAAGAAAGAACTCTGGGAGGAAAAA
Unaligned ( gi|16 ): TAAAATAAGTATCTCTCTCATTATTCATTTACTCGGGATGAAGTGCACAGA
Unaligned ( gi|18 ): TTATACCATACACATGTATAATATGAGTCTGTCACA