lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 111 999999999999999999999999999999999999999999999999999999999999999999999 111111 9999999999999999 1 2222222222 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 1 666666666666666666666666666 4444444444444 55555555555 1 1 2222 1 222222222 333333333 22222 11 5555555555 33333333333333333 555555555555555555555555555555 11 11 777777777777777777777777 2 4444444444444444444444444444 1111 111 4444444444 333333333333333333 11 111 1111 22222 4444444444444444444444 11 11 11 1 2222 1 44444 11 1 22 1 22 1111 11 111 3 111 44444 11 11 333333 1 11 1111 555555555555555555555555555 1111 1 22222222 11 11 1 333 1 2 333333333 333 2 2 3333 1 1 1 11 33 1 1 4444444 1 22222 111 33 2 111 1 1 1 1 2 2 222 22 2 11 2 2222 2 11 3333 3 111 2 11 2 2
lowQualScore : 5 7777 4 777 222222222 4 333 4 66 4 4 88 888 66 555555555555555555555555555555555555555555555555555555555555555555555 9 888 5 4 444444 5 5 6666666666666666 8 4 4 4 66 3 6 66 777 7777777777 3 4 66 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 5 5 5 9999 3 1 5 5 5 5 777777777777777777777777777 5 5 5555555555555 5 5 66 33333333333 0 0 888 5 9999 9999 1 5 333333333 222222222 3 5 0 5 5 5 99999 5 5 22 1111111111 44444444444444444 5 888888888888888888888888888888 0 00 5 22 777777777777777777777777 8 0 3333333333333333333333333333 8888 8 111 0 88 7777777777 99 8 000000000000000000 33 0 444 3333 8 66666 8 6 5555555555555555555555 88 11 11 8 11 8 5 9999 3 2 0 55555 3 88 2 0 33 0 33 7777 8 5 11 0 555 0 222 8 44444 8 00 66 999999 6 88 33 8 4444 444444444444444444444444444 3 4 3 6 99 0000 6 3 7 55555555 0 3 3 88 88 3 888 3 6 888888888 111 7 8 3 7 6 8888 3 3 3 77 33 11 3 0 7 6 2222222 3 00000 666 00 3 222 3 3 3 3 6 3 111 7 22 6 88 3 2222 3 88 0000 0 777 0 33 0 0 99
lowQualScore : . .... . ... ......... . ... . .. . . .. ... .. ..................................................................... . ... . . ...... . . ................ . . . . .. . . .. ... .......... . . .. ................................................................................................. . . . . .... . . . . . . ........................... . . ............. . . .. ........... . . ... . .... .... . . ......... ......... . . . . . . ..... . . .. .......... ................. . .............................. . .. . .. ........................ . . ............................ .... . ... . .. .......... .. . .................. .. . ... .... . ..... . . ...................... .. .. .. . .. . . .... . . . ..... . .. . . .. . .. .... . . .. . ... . ... . ..... . .. .. ...... . .. .. . .... ........................... . . . . .. .... . . . ........ . . . .. .. . ... . . ......... ... . . . . . .... . . . .. .. .. . . . . ....... . ..... ... .. . ... . . . . . . ... . .. . .. . .... . .. .... . ... . .. . . ..
lowQualScore : 7 9999 4 888 111111111 4 999 4 11 4 4 88 888 99 999999999999999999999999999999999999999999999999999999999999999999999 4 888 0 0 444444 2 0 2222222222222222 9 4 4 4 33 3 7 11 888 4444444444 3 4 11 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 0 7 6666 0 9 7 7 0 7 999999999999999999999999999 0 0 5555555555555 0 0 99 44444444444 0 0 888 0 5555 0000 4 7 999999999 999999999 6 7 9 7 7 7 33333 7 7 11 1111111111 88888888888888888 0 222222222222222222222222222222 7 44 7 33 000000000000000000000000 0 4 4444444444444444444444444444 0000 0 000 8 88 0000000000 00 0 000000000000000000 00 8 000 0000 0 22222 0 0 6666666666666666666666 88 00 00 0 00 0 0 0000 0 0 0 00000 2 22 5 0 88 0 00 0000 0 0 00 8 222 0 444 0 66666 0 88 44 000000 0 88 66 0 8888 555555555555555555555555555 5 2 5 7 00 8888 7 3 3 77777777 8 0 2 33 33 3 000 3 7 777777777 000 0 3 7 3 7 3333 3 3 3 77 33 77 3 7 3 0 7777777 3 00000 777 33 3 333 3 3 3 3 7 7 777 3 00 7 33 3 7777 3 33 7777 0 777 0 88 0 0 33
consensus : TGTG-AGCTTTTA-G--T-AACTAGG---G-A-CG----T-GCGA---TTT-C--CCGA-AC-TAACAGACGT---CA--GAAAANCATTCGGCCGAACCTCGGCGTGGTACCGGAACCTTTACACAATCGCCGAGGGTGTGCCGAAG------GACAGAAAATG---GGA-CGTGCAA------AGACGGCAAG-AGATTGAA-AGA---A---GAGC-G-AT-TT-GCCT-CC-CGCAAA--CG---AA-AA-----A-TT-GT-A--CAAAAA--CC--AGTTATG-GA--G-CC--C-G--GA-----C-CAGAG-G-TGA-AT-----AT----------CG-G--AC--CA-T-CTATTC-------AAAAATTGGT-AA-G-AAAA-G-TCGTTTTGATAAT-ATC-GGCAGG-TTAT-TTAT--AGCGGTC--TCTCAGA----GA-CTCA-AAA--TT----ACA-TATC-CCTAG-TAA--AGTAGT---------AATAGAT-CCC-GACA---ATG-TGTA-AATGTATG--T-AGCCATGAT-AAAA-TGTTGT-GTAGAATTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TTG---GAGC-GA-TTGGATCCA-TGTTAT--TGTTTTTNN--GAAG-TCT-----CTTC-TTTCGAT---C-TAG-NGTTAATTTCCCCG-TAT--TCCCCGTTG-TG-AAATGAGAAAGTAGAC------------------------AC-AAGACTGCTCG--------AAGGA----AACTNATCT--GTA--A-TGT-ATGTTGGAGAGC-AAGTTTTTT--AAGATATA-TTT-AGTGT--AA-T-A----A----TTG-TGCAAG---TTGA-T--AAA-CACAACAGG-TGATATAAT-------GAGATTTA-T-----AATGAC-AACAA--TT--T-CTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCC-CCCCCTTCCCCCCCCCCCCCNCCCCCCCCCCCTTCAAATGTGG-GAGGCAC----TAGTGGTCATCTCATACACTTGTACTGTTCAGTCCCAGATAGGAA-TAG-GAAAGGAA-ATG-ATGTCTT----TAG-GACTGAAT--GAATTTGGATTCA-TAATACCTAATT-AAATTGTG-TAG-AATACTTCAA-ACAAAANACAAGGTCAATACTGC-----ATAGGTCACAA-CCATAT-G-AACCATGGCATGC---AGTG-------TTCAGATTT-T----TTTTTTTTTTTTTTTTTTTAAATTTC-ATTACTTGTAA-TTGTAC-ATGTAC-ATTACAGGTA-TGA----AAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATA-T-TTAATCCATAGAT-GAAGGCCA-AA------GGGTGT--GGTACTTCCAGTTTTGAAGTT-GTGGAACCATGAGGAGATTGTACCAGC-TAC-AT-GCGAAGGCTTTGGATGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTTC-GAG---A---TAT-AGTGTC--GC-AGAAGTGT-G-TCTCCCT--CTTCAGTTCA-TGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTGTTTATAT-ACATCCCT-TATAAGTCGG-TACAATTTGTTG--AGA-GCCATTTGCTGG--A-ATGAAGATATCTCA-TTGAC--AGT--T-TTTTTTTATGAGTACAGTA-T-AGATAACCTGTTTTGGTTTTC--AGTTGAAAATGTCAAAAGTTACCCGAA
Reference ( gi|2 ) : TGTG-AGCTTTTA-G--T-AACTAGG---G-A-CG----T-GCGA---TTT-C--CCGA-AC-TAACAGACGT---CA--GAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------GACAGAAAATG---GGA-CGCGCAA------AGACGACAAG-AGATTGAACAGATTGA---GAGC-G-AT-TT-GCCT-CC-CGCAAA--CG---AA-CA-----A-TT-GT-A--CAAAAA-ACCG-AGTTATGCGG--G-CC--C-A--GA-----CACAGAG-G-TGA-AT-----AT----------CG-G--AC--TA-T-CTGTTAGA-----AAAAATCGGT-AA-G-AAA--G-TCGTTTTGATAAT-ATC-GGCAGG-TTAT-TCAT--A-CGGTCTATCTCAGG----GA-CTCA-AAA--T-----AC--TATC-CCTAG-TAA--AGTAG----------AATAGAT-CCC-GACA---ATG-TGCAGAATGTATG--T-AGCCATCAT-AAAACTGTTGTGGTAGAATTCTATATAGTACACAAGGAATCA-GTGGTATCAAC-CA-TCAAGATGTG-TGG---GAGC-GA-TTGGATCCATTGTTATA-TGTTTTTGT--GAAG-TCT-----CTTC-TTTCGAT---C-TAG-CATTAATTTCCCCG-TAT--TCCCCGTTT-TG-AAATGAAAAAGTAGAC------------------------AC-AAGATTGCTCG--------AAGGA----AACTTATC---GTA--A-TGT-ATGTTGGAGAGC-AAG--TT----ACGATATA-TTT-AGTG---AA-T-A----A----TTG-GGCAAG---TTGA-T--AAA-CACAACA-G-TGATATAAT-------GAGATTTA-------AATGAC-AACAA--TT--T-CTT--CG-TTGAGCTATCTTGCTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCACCCCCCCCCCCCTCAAATGTGG-GAGGCA-----TAGTGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA--GAAAGGAA-ATG-ATGTCTT----TAG-GACGGAAT--GAATTTGGATTCAGTAATACCTAATT-AAATTGTGCTAGCAATACTTCAA-ACAAAACACAAGGTCAATACTG------ATAAG-CACAA-CCATAT-G-AACCATGGCATGC---AGTG-------TTCAGATTTGT----TTTTTTTTTTTTTTTTTCTAAATTTC-ATTACTTGTAA-TTGTAC-ATGTAC-ATTACAGGTACTGA----AAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAAG-CCA-AA------GGGTGTCGAGTACTTCCATTTATGAAGTTTGTGGAACCA-GAGGAAG--GTACCAGC-TAC-AT-GTGAAGGCTTGAGCGGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTTCTGAG---A---TAT-AGTGTC--GC-AGAAGTGT-G-TCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTG-TTATATAACATCCTT-TATAAGTCGGTTACAA-TTGTTG--AGAGGCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTAT-AGTACAGTA-T-AGA-AACCTGTTTTGGTTTTC--AG-TGAAAATG-CAAATATTACCCGAA
gi|1 : TGTG-AGCTTTTA-G--T-AACTAGG---G-A-CG----T-GCGA---TTT-C--CCGA-AC-TAATAGACGT---CA--GAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------GACAG-AAATG---GGA-CGTGCAT------AGACGGCAAC-AGAT-----AGA---A---GAGC-G-AT-TT-GACT-CC-CG--AA--CG---AA-AA-----ATTT-GT-A--ACAAAA-ACC--AG-TATG-GA--G-CC--C-AG-GA-----C-CAGAG-G-TGA-AT-----TT----------C--A--ACCATA-T-CTATT--C-----AAAAATTGGT-AA-G-AAA--ATTCG-TTTGATAATAATT-GGCAGG-TTAT-T-AT--AGCGG----TCTCAGA----GA-CTCA-AAAT-T-----ACA-TATC-CCTAG-TAA--AGTAATAATACTACTAATAGAT-CCC-GACA---ATG-TGT--TATGTATG--T-AGCCATGAT-AAAAATGT-----TAGAATTAT-TATAGTA-ACAGAGGATCA-GTGGTACCAAC-CA-TCAAGATGTG-T-T---GAGC-GA-TT-GATCCA-TGTTATGTTGTTTTTCA--GA-----------CTTC-TTTCAAT-----TAG-----AGT--------TAT--TCCCCGTCG-TG-AAA-GAGAAAGTAGATTACCCCGGCATTTATTGTTTACAAAC-AAG-CTGCTCGGATATTGCAAGGA----AACTGATCT--GTA--A-TGT-ATGTT--AGAGC-AAGTTTT----GAGATATA-ATT-AGTG---AATT-A----A----TTG-TGCAAG---TTCA-T--AAA-CAC-ACAGG-TGATAT-AT-------AA----TG-------AATGACAAAAAA--TG--T-CTT--CG-TTGAGCTATCTTG-TGCCCCCCCC---CCCCCTTC
gi|12 : agTGCG-AGCTTTTA-G--T-AACTAGG---G-A-CC----T-GTGA---TTT-C--CCAC-AC-TAACAGACGT---CA--GAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------GACAGAAAATG---GGA-CGTGCAA------AGATGGCATG-AGATTGA--------A---GAGC-G-AT-TT-GCCT-CC-CGCAAA--CG---AA-AA-----ATTT-GT-A--CAAAAA---CT-AG-TATG-GA--G-CC--CAA--GA-----Caaatgtgggaggcactagtggtcatctcatacacttgtatgttcagtcccagataggaataggaaaagaaatatgtctttaggattgaatgaatttaattcataatactaattcaaattgtgtagaatacttcaaacaaaacaagtcaatactgcatgggttacaaccatatggaaccatggcaagcagtcttagatttttattttttttaaattcattactgataattgtacatgtacatacatgtatgaaaaaagatgaccagttatgatatcagtatcagtaaattaacaaatcttgagctaattgcatgcatttttttcttttacaaacatacacaaataacatttaaaatatttaatccatagatgaaggccagaagggtgtggtacttccagttttgaagttatggatcatgaggagattgtaccagctacatgcaaaggctttggatggacagagcgttggaaaattgtggaacttgttgtcttgtcaaagggattatgagtctgccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaaacatagtctttctgccttttaaaggtttttttttttgtttatatacattcctataagtcggtacaatttgttgagagccatttgctggataatgaagatatctcattaacagtgatttttttatgagtacagtattagataacctgttttgattttcagttaaaaatgtcaaaagttacccgaagcagataatattctatacaattgtgcaat
gi|3 : atgagGTGTAGCTTTTA-G--T-ACTTAGG---G-A--G----T-GCGA---TTTTC--CCGA-AC-TAACAGACGT---CAACGAAAATCATTCGGCCGAACCTCGGCGTGGTACCGGAACCTTTACACAATCGCCGAGGGTGTGCCGAAGT-----GACAGAAA-TG---GGA-CGTGCCA------AGACGACAAG--GATTGAA------GA---GGGC-G-AT-TT-GCCTGCC-CG-AAA--CGGTAAA-CA-----A-TTTGT-A--CAAA-----CGCAGT-ATGGAG--G-TCTCC-A--GG-----ATCAGAG-G-TGAGAT-----AT----------TGAG--AC--CAAT-CTGTTC-A-----AAAAATTGGT-AAAG-AAA--A-TAGTTTGAATATA-ATC-GGC-GG-TTAT-T-AT--AGCGGTCT----CAGAT---AA-CTCA-AAAATC-----AC---ATC-CCTAG-TAA--AGTAT----------AATAGAT-CCCCGACA---A-G-TGTA--ATGTATG--T-AGC-ATGAT-AAAA---TCGTGTTAGAATTCT-TATAGTA-ACA-GGAATCA-GTGGTATCAACGCA-TCAAGATGTG-TTG---AGGCCGA-TTG-ATCCAA-GTTAT---GTTGTTG-----AG-TCTAAATTCTTT-TTTCGAT-----TAGACGTTA-TCTCCGCG-TAT--TCCC-GTTTGTG-AAATGAAA--GTAGAC------------------------AC-AAG-CTGCTCG--------GAGA--------TGATCT--GTA--AATGT-ATGTTGGAG--C-AAG--TTTTTGA-GATATA-TTTTAGTGTGGAA-TTA----A----TTG-TGCAAG---TTGA-T--AAAACACA-CA-GGTGATATTAT-------GAAGTTTA-------TATGAA-AACAA--TT--TTCTT--CG-TTGAGCTATCTTGGTGCCCCCCC----CCCCCTTC
gi|7 : aatgaGTG-AGCTTTTA-AGTT-AACTAGG---G---TG----T-GCGA---TTT-C--CCGA-AC-TAA------------------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------GACAGAAA-TG---GGA-CGTGCCA------AGACGGCAAG-AGATTGAA------------GGC-G-AT-TT-GCCT-CC-CGCAAA--CG---AA-AA-----A-TTTGT-A--CACAAA--CC--AGT-ATG-GA--G-CC--A-G--GA-----C-CAGAG-G-TGA-AT-----AT----------CG----ACA-TA-T--TATTC-------AAAAATTGGT-AA-G-AAAA-G-TCGTTT-GATAAT-ATT-GGCAGG-TTAT-TTA---G-CGGTCT----CACA----GA-CTCA-AAA--TT----ACA-TATC-CCTAG-TAA--AGTAGT---------AATAGAT-CCCCGACA---ATG-TG----ATGTATG--T-AGCCATGAT-AAAAATGTTGT--TAGTATTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-T-T---GAGC-GA-TT-GATCCA-TGT-----TGTTTTTCA--GA-----------CTTC-TTTCGAT-----TAG-AGTTA---------------TTCCCGTTG-TG-AAA-GAGAAAGTAGAaaatgtgggaggcactagtggtcatctcatacaactgtatgtttagtccagataggaaataaggaaaggaaattgtctttaggatgaatgatttgatcataatactattaaattgtgtgaatacttcaacacataaaacaagtcaatactgccatatataggtacaaaccatatggaactatggcatgcgtgttagatttttttaaaaaattcattactggtaaattgtaccatgtacatacaggtagaaaaagattaccagttatgaatcatgcattttttcttttaacaaatatacacaataacatttaacatatttaatccatagattgaaggccagatcgaaggggtgtggtacttcaagttttgaagttgtgggaccatgaggagattgtaccagcctaccatcgtgaaggctttggatgaacagatagttggagaattcgtggaacttgttttctgtccgagggtatgtggggtctggccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaacatacagtcctttctgtcaatttaaaggtattttttattttgtttatatacatccctatatagtcgtacaatttgttgcaagagccatttgctggataaaaagatatctcattgaccaagtggttttttttatgagta
gi|5 : TG-AGCTTTTA-G--T-AACTAGG---GCG-CG----T-GC-A---TTT-C--CCGA-AC-TAACAGACGT---CA--GAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAGAAAATG---GGAACGTGCAAGAGTCAAGACGGCAA--AGA-----CGGA--------------------GCCT-CCGCGCAAA--CG---AAACT-----T-TT-GTCA--CAAAAA-TCAG-CGTAATG-GA--G-CC--A-G--GA-----C-CAGAG-GGTGG-AT-----GTGGTGTCATAGTG-A--AC--AT-T-CTATTC-------AAAGATTGGTTAA-G-AAAA-G-TTGTTT-GATAAT-ATCTGGCAGG-TTAT---AT--AGCGGTC-A----AGA----GA-CTAA-AAA--T-----AC--AATC-CCTAG-TAA----T----------------GATCCCC-GACA---ATG-TGTA-AATGTATG-----ACCATAATAAAAATTGTTTTTG-AACATTCT--------------GAATTAGGTGGTAT-AAC-CA-TCAAGATGTG-TTG---AAGC-AA-TTG--TTC----------TGACTTCAA--GAAGTTCT-----CATC-TTTCGAG---CTTAG-TGCTTATTCTCCCG-TGTAAT-----TTT-TGTAAAC--AAAACT--GC------------------------TCGGGGATTGCAC---------AAGG----------ATCT--GTA--ATTGT-ATGTTG--GAGC--AGTTTT----GAGATATATTTT-AGTG---AA-T-ATGTCAATGTTTG-TGC-AG---TTGATT--TAC-CAC-ACAGG-TGATATAATCATCAACTAGATTGAATTCACTAATGAC--ACAAATTT--T-CTTACCGTTTGAGCTATCTTTGTGCCCCCCCCCC-CCCCCTTC
gi|8 : attaaggtttgtactggtgtTG-AGCTTTTA----T-AAC---A---G-A-C-----T--CGA---TTT-C--C-GA-AC-TAATTGACGT---CA--GAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------GACA-AAAATG---GA---GCGGAG------AG----CAAGGAGATTGAA-----------GAGCAG-AT-TT-GCT---C-CGCAAA--CG---AA--A-----T-TT-GT-A--CAAAAA--CC--AGT-ATG-GA--G-CC--A-G--GA-----C-CAGTGTG-T----T-----AT----------CG----ACA-TA-TTCAGTTC-------AAACATTG-T-CA-G-AA---G-TCGTT---GTAAT-ATT-GGC--G-TTAT-TACT--A-CG-----TCTCAGGAGGAGA-CTCA-AAA--TTACATACCCTATA-CCTAG-TAA--AGTGT----------AATAGAT-CCC-G-CA---ATGTTGTA-AATGTATG--T-G--CATGAT-AAAA-TGTTGT--TAGAATTTT---TAG---AAAAGGAATCA-GTGGTACCAAC-CAGTCAAGATGTGTTTT---AAGC----TTGGATCC-TTGT-----TGTTTTTCA--GA-----------CTTCTTTTCGATTAAC-TAG--GTTA--TTCCCaaatgtggcgaagcaactgtttggtcatctcatacacttgtacgttcagtgccagataggaataggaagaaacaagtatgtcctttaatagaaactgaatagaaatttgtgttcataatactaaatcaaattgtgagaatacttcaaaccaaaaacaagtcaatacctgcactgggtcacaccatggattgctagtgcaagtgcaaaactggtagacaaatcaaattttattgct
gi|6 : gtatgagtgt-AGCTTTTAAG--T-AACTAGG---G-AGCGGCGTT-GCGAATGTTT-CAACCGACAC-TA
gi|9 : TTA-G--TCAACTAGGCGGA-A-CG----TTGCAACC-TTT-C--CCGA-ACTTAATAGACGTAAACA--GAAAtaaaaatcacttcgggcgcgcacacctcggctgatacggaaccatataggacaattcatcgaccttcgatgggtgtgtgccgagtggacagaaaatgtcgggacatgcaaagacggcaagagattgaaaggagcgcatttgcctccgcgcaaagacgaacaatttgtgaccaaaaaaccagtgtggggaagcctaggatttccaagaaggtgaatattggccataatctgtttcaaaaatttggcaagaaaaagtcgtgttgataatatcggcaggttatctatagacggttctcagagacctcaaaattacatattgcctagtaagtagtaagcgattaatagatccccgacaatgtgtaaattgtatgtaagccatgataaaaaatgtgtagaatttcttatagtaacaagatcgtggtagcaaccatcaagattgttgtttgagcgactttgatccatgttatgtttgtgttcaaagtctcttctttcgatagagttatttccccgttgtgaaatttgaaagtagacacaagctgctcggaagattgcaacttatctatgtattatgtaatgtttgtgagcgaagttttgaggatatagttagtgtaaataattgtgacaaagttttgactaaaacacacaggtgatataatgaatttattaatgaaaacaatttgtcttcgtt
gi|10 : tgtaatgagtgtcgaatgtccccaatttgtggTA-G--T-A-CTAGG---G-A-CG----T-GCGA---TTT-C--CCGA-AC-TAA-----------A--AAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------GACAGAAA-TG---GGA--GTGCCA------A-ATGGCAAG-AAA------AGATTGAA--GAGC-G-AT-TTTGCCT-CCACGC-AA--CG---AA-AA-----T-TT-GT-A--CAAACA-AC---AGTT----GA--G-CC--C-A--GA-----C-CAGAG-G-TGA-AT-----AT----------C--G--ACG-CA-T-ATATT--T-----AAAAATTGGT-AA-GAAAA--G-T--TTTTGAT-AC-ATC-GACAGGATTATATTAT--AGCGG----TCTCA-A----GA-CTCATAAT--T-----ACA-TATC-CCTAGTTAA--AGTAGTAC-------ATTAGAT-CC---ACAAATATG-TGTAAGA-GTATGCTT-AGCTATtcatcttcaccgaatcaccctcgggcccatgatacacagaccactatacgtcaggcagaatgattcctggccgaagtagttgcctccgagtatggatcattggatgcgagaaaataagcagagggcacgtagcacaaagaatcggtcgagtattgaaacgagccgatgttgctccgaaacgaaaagatttattgtacaaaaattccgagtacttggatcccagcgaccagaggttgacattaagaatcgaccatatattctatcttcaaaaattggtaa
gi|6 : gttgta------GACAGAAAATGTCGGGA-CATGCAA------AGACGGCAAG-AGATTGAA-AG--------GAGC-GCAT-TT-GCCT-CCGCGCAAAGACG---AA-CA-----A-TTTGT-GACCAAAAA-ACC--AGT-GTGGGGAAG-CC--T-A--GGATTTCCAAGAAG-G-TGA-AT-----AT----------TG-GCCAT--AA-T-CTGTTTCA-----AAAATTTGGC-AA-G-AAAAAG-TCGTGTTGATAAT-ATC-GGCAGG-TTAT-CTATAGA-CGGT---TCTCAGA----GACCTCA-AAAT-T-----ACA-TATTGCCTAG-TAAGTAGTAAGCGATT----AATAGATCCCC-GACA---ATG-TGTAAATTGTATG--TAAGCCATGAT-AAAA--AATGT-GTAGAATTTCTTATAGTA-ACAAG--ATC--GTGGTAGCAAC-CA-TCAAGAT-TG-TTGTTTGAGC-GACTTTGATCCA-TGT--TA-TGTTTGTGTTCAAAG-TCT-----CTTC-TTTCGA------TAG-AGTT-AT----------T--TCCCCGTTG-TG-AAATTTGAAAGTAGAC------------------------AC-AAG-CTGCTCG--------GAAGATTGCAACTTATCTATGTATTA-TGTAATGTTTGTGAGCGAAG--TTTTG-AGGATATA-GTT-AGTGTA-AA-T-A----A----TTGTGACAAAGTTTTGA-CTAAAA-CAC-ACAGG-TGATATAAT-------GA-ATTTATT-----AATGAA-AACAA--TTTGT-CTT--CG-TT
gi|9 : agcttttaagtaactagggagcggcgttgcgaatgtttcaaccgacactataaaaatcacttcgggcgcgcacacctcggctgatacggaaccatataggacaattcatcgaccttcgatgggtgtgtgccgagtgATTGAAACGAGCCG-ATGTT-GCT---C-CG-AAA--CG---AA-AAGATTTA-TT-GT-A--CAAAAATTCCG-AG-TACTTGG--ATCC--C-AGCGA-----C-CAGAG-GTTGACATTAAGAAT----------C--G--AC--CA-T-ATATTCTATCTTCAAAAATTGGT-AA-
gi|4 : tgtaatgagtgtcgaatgtccccaatttgtggttagtcaactaggcggaacgttgcaacctttcccgaacttaatagacgtaaacagaaatcatcttcaccgaatcaccctcgggcccatgatacacagaccactatacgtcaggcagaatgattcctggccgaagtagttgcctccgagtatggatcattggatgcgagaaaataagcagagggcacgtagcacaaagaatcggtcgagtTCTCAGG----GA-CTCA-AAA--TT----ACA-TATC-CCTAG-TAA--AGTAG----------AATAGAT-CCC-GACA---ATG-TGCAGAATGTATG--T-AGCCATCAT-AAAACTGTTGTGGTAGAATTCTATATAGTACACAAGGAATCA-GTGGTATCAAC-CA-TCAAGATGTG-TGG---GAGC-GA-TTGGATCCATTGTTATA-TGTTTTTGT--GAAG-TCT-----CTTC-TTTCGAT---C-TAG-CATTAATTTCCCCG-TAT--TCCCCGTTT-TG-AAATGAAAAAGTAGAC------------------------AC-AAGATTGCTCG--------AAGGA----AACTTATC---GTA--A-TGT-ATGTTGGAGAGC-AAG--TT----ACGATATA-TTT-AGTG---AA-T-A----A----TTG-GGCAAG---TTGA-T--AAA-CACAACA-G-TGATATAAT-------GAGATTTA-------AATGAC-AACAA--TT--T-CTT--CG-TTGAGCTATCTTGCTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCACCCCCCCCCCCCTCAAATGTGG-GAGGCA-----TAGTGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA--GAAAGGAA-ATG-ATGTCTT----TAG-GACGGAAT--GAATTTGGATTCAGTAATACCTAATT-AAATTGTGCTAGCAATACTTCAA-ACAAAACACAAGGTCAATACTG------ATAAG-CACAA-CCATAT-G-AACCATGGCATGC---AGTG-------TTCAGATTTGT----TTTTTTTTTTTTTTTTTCTAAATTTC-ATTACTTGTAA-TTGTAC-ATGTAC-ATTACAGGTACTGA----AAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAAG-CCA-AA------GGGTGTCGAGTACTTCCATTTATGAAGTTTGTGGAACCA-GAGGAAG--GTACCAGC-TAC-AT-GTGAAGGCTTGAGCGGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTTCTGAG---A---TAT-AGTGTC--GC-AGAAGTGT-G-TCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTG-TTATATAACATCCTT-TATAAGTCGGTTACAA-TTGTTG--AGAGGCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTAT-AGTACAGTA-T-AGA-AACCTGTTTTGGTTTTC--AG-TGAAAATG-CAAATATTACCCGAA
gi|16 : T--GAAG-TCT-----CTTC-TTTCGATA--A-TAG-AGTTAA--TCCCCGTTAT--TCCCCGTTG-TG-
gi|5 : CCCCCCCCCCCCCCCTTCAAATGTGGCGAAGCAACTGTT--TGGTCATCTCATACACTTGTAC-GTTCAGTGCCAGATAGGAA-TA--GGAAGAAACAAGTATGTCCTTTAATAGAAACTGAATAGAAATTTGTGTTCA-TAATACTAAATC-AAATTGTG--AG-AATACTTCAA-ACCAAAAACAA-GTCAATAC
gi|3 : attaaggtttgtactggtgttgagcttttagtaactagggcgcgtgcatttcccgaactaacagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaaatgggaacgtgcaagagtcaagacggcaaagacggagcctccgcgcaaacgaaacttttgtcacaaaaatcagcgtaatggagccaggaccagagggtggatgtggtgtcatagtgaacattctattcaaagattggttaagaaaagttgtttgataatatctggcaggttatatagcggtcaagagactaaaaatacaatccctagtaatgatccccgacaatgtgtaaatgtatgaccataataaaaattgtttttgaacattctgaattaggtggtataaccatcaagatgtgttgaagcaattgttctgacttcaagaagttctcatctttcgagcttagtgcttattctcccgtgtaatttttgtaaacaaaactgctcggggattgcacaaggatctgtaattgtatgttggagcagttttgagatatattttagtgaatatgtcaatgtttgtgcagttgatttaccacacaggtgatataatcatcaactagattgaattcactaatgacacaaattttcttaccgtttgagctatctttgtgCCCCCCCCCCCTTCAAATGTGG-GAGGCAC----TAGTGGTCATCTCATACAACTGTA-TGTTTAGTCC-AGATAGGAAATAAGGAAAGGAA-AT---TGTCTT----TAG-GATG-AAT--GA-TTTGA--TCA-TAATACT--ATT-AAATTGTGT--G-AATACTTCAACACATAAAACAAG-TCAATACTGCCATATATAGG-TACAAACCATAT-GGAACTATGGCATGC----GTG-------TT-AGATTT-------------------TTTTAAAAAATTC-ATTACTGGTAAATTGTACCATGTAC-AT-ACAGGTA--------GAAAAAGATTACCAGTTATGA-ATCATGCATTTTTTC--TTTTAACAAATATACACAAT-AACATTTAACATA-T-TTAATCCATAGATTGAAGGCCA-GATCGAAGGGGTGT--GGTACTTCAAGTTTTGAAGTT-GTGGGACCATGAGGAGATTGTACCAGCCTACCATCGTGAAGGCTTTGGATGAACAGATAGTTGGAGAATTCGTGGAACTTGTT-TTCTGTCC-GAGGGTA---TGT-GGGGTCTGGCCAGAAGTGT-GGTCTCCCT--CTTCAGTTCA-TGCATGCAACCACAATTCAA--CATACAGTCCTTTCTGTCAATTTAAAGGTATTTTTTATTTTGTTTATAT-ACATCCCTATAT-AGTCG--TACAATTTGTTGCAAGA-GCCATTTGCTGG--ATAAAAAGATATCTCA-TTGACCAAGTGGT-TTTTTTTATGAGTActgcactgggtcacaccatggattgctagtgcaagtgcaaaactggtagacaaatcaaattttattgct
gi|1 : aatgagtgtagcttttagtacttagggagtgcgattttcccgaactaacagacgtcaacgaaaatcattcggccgaacctcggcgtggtaccggaacctttacacaatcgccgagggtgtgccgaagtgacagaaatgggacgtgccaagacgacaaggattgaagagggcgatttgcctgcccgaaacggtaaacaatttgtacaaacgcagtatggaggtctccaggatcagaggtgagatattgagaccaatctgttcaaaaaattggtaaagaaaatagtttgaatataatcggcggttattatagcggtctcagataactcaaaaatcacatccctagtaaagtataatagatccccgacaagtgtaatgtatgtagcatgataaaatcgtgttagaattcttatagtaacaggaatcagtggtatcaacgcatcaagatgtgttgaggccgattgatccaagttatgttgttgagtctaaattcttttttcgattagacgttatctccgcgtattcccgtttgtgaaatgaaagtagacacaagctgctcggagatgatctgtaaatgtatgttggagcaagtttttgagatatattttagtgtggaattaattgtgcaagttgataaaacacacaggtgatattatgaagtttatatgaaaacaattttcttcgttgagctatcttggtgcCCCCCCCCCCCTTCAAATGTGG-GAGGCAC----TAGTGGTCATCTCATACACTTGTA-TGTTCAGTCCCAGATAGGAA-TAG-GAAAAGAA-AT--ATGTCTT----TAG-GATTGAAT--GAATTT-AATTCA-TAATA-CTAATTCAAATTGTG-TAG-AATACTTCAA-ACAAAAC---AAGTCAATACTGC-----ATGGGTTACAA-CCATATGG-AACCATGGCAAGC---AGTC-------TT-AGA--------------TTTTTATTTTTTTTAAA-TTC-ATTACTGATAA-TTGTAC-ATGTAC-A-TACATGTA-TG-----AAAAAAGATGACCAGTTATGATATCA
gi|13 : agtgtgagcttttagtaactagggacgtgcgatttcccgaactaatagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaatgggacgtgcatagacggcaacagatagaagagcgatttgactcccgaacgaaaaatttgtaacaaaaaccagtatggagcccaggaccagaggtgaatttcaaccatatctattcaaaaattggtaagaaaattcgtttgataataattggcaggttattatagcggtctcagagactcaaaattacatatccctagtaaagtaataatactactaatagatcccgacaatgtgttatgtatgtagccatgataaaaatgttagaattattatagtaacagaggatcagtggtaccaaccatcaagatgtgttgagcgattgatccatgttatgttgtttttcagacttctttcaattagagttattccccgtcgtgaaagagaaagtagattaccccggcatttattgtttacaaacaagctgctcggatattgcaaggaaactgatctgtaatgtatgttagagcaagttttgagatataattagtgaattaattgtgcaagttcataaacacacaggtgatatataatgaatgacaaaaaatgtcttcgttgagctatcttgtgcc-ATGTCTT----TAG-AACTGAAT--GAATTT-GATTCA-CAATA-CTATTC-AAATTGTG-TAG-AATACTTCAA-ACAAAA-ACAA-ACCAGTACTGC-----ATGGGTCACAA-CCATG--G-AACCATGGCATGC---AGTG-------gtatcagtaaattaacaaatcttgagctaattgcatgcatttttttcttttacaaacatacacaaataacatttaaaatatttaatccatagatgaaggccagaagggtgtggtacttccagttttgaagttatggatcatgaggagattgtaccagctacatgcaaaggctttggatggacagagcgttggaaaattgtggaacttgttgtcttgtcaaagggattatgagtctgccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaaacatagtctttctgccttttaaaggtttttttttttgtttatatacattcctataagtcggtacaatttgttgagagccatttgctggataatgaagatatctcattaacagtgatttttttatgagtacagtattagataacctgttttgattttcagttaaaaatgtcaaaagttacccgaagcagataatattctatacaattgtgcaat
gi|14 : tTG------ACAAG-CGCA---------G-AATGATGACATATTTTAGTGAAATTCGTTTAAATTTTTAATTTTTTTTTTTTTTTTTTTTTAAATCTCTATTAC--AGAG-AGGTAC-ATGTAC-A-TGCAGGT--TGA----AGAA------ATCAATGATGATATCATcagtgcaaaactggtagacaaatcaaattaatatt
gi|4 : TTTC-AGTACCTGTAA-T-GTAC-ATGTACAATTACAAGTAATGA----AA
gi|1 : tctcagggactcaaaattacatatccctagtaaagtagaatagatcccgacaatgtgcagaatgtatgtagccatcataaaactgttgtggtagaattctatatagtacacaaggaatcagtggtatcaaccatcaagatgtgtgggagcgattggatccattgttatatgtttttgtgaagtctcttctttcgatctagcattaatttccccgtattccccgttttgaaatgaaaaagtagacacaagattgctcgaaggaaacttatcgtaatgtatgttggagagcaagttacgatatatttagtgaataattgggcaagttgataaacacaacagtgatataatgagatttaaatgacaacaatttcttcgttgagctatcttgctgcccccccccctcccccttcccccccccccccacccccccccccctcaaatgtgggaggcatagtggtcatctcatacacttgtactgtttagtcccagataggaatagaaaggaaatgatgtctttaggacggaatgaatttggattcagtaatacctaattaaattgtgctagcaatacttcaaacaaaacacaaggtcaatactgataagcacaaccatatgaaccatggcatgcagtgttcagatttgttttttttttttttttttctaaaTTTC-AT-ACATGTA---TGTAC-ATGTACAATTATCAGTAATGAATTTAAAAAAAATaaaagattaccagttatgatatcatgcattttttctttacaaatatacacaaaaacatttaaaataatgttaatccatagatgaagccaaagggtgtcgagtacttccatttatgaagtttgtggaaccagaggaaggtaccagctacatgtgaaggcttgagcgggacagagcgttggagaatttggaacttgtttctcgttctgagatatagtgtcgcagaagtgtgtctcccttccttcagttcactgcatgcaaccacaattcaaaccatacagtctttcttccatttaaaggtatttttatttgttatataacatcctttataagtcggttacaattgttgagaggccatttgctggaatgaagatatctcagttgacagtttttttttatagtacagtatagaaacctgttttggttttcagtgaaaatgcaaatattacccgaa
gi|1 : agtgtgagcttttagtaactagggacgtgcgatttcccgaactaatagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaatgggacgtgcatagacggcaacagatagaagagcgatttgactcccgaacgaaaaatttgtaacaaaaaccagtatggagcccaggaccagaggtgaatttcaaccatatctattcaaaaattggtaagaaaattcgtttgataataattggcaggttattatagcggtctcagagactcaaaattacatatccctagtaaagtaataatactactaatagatcccgacaatgtgttatgtatgtagccatgataaaaatgttagaattattatagtaacagaggatcagtggtaccaaccatcaagatgtgttgagcgattgatccatgttatgttgtttttcagacttctttcaattagagttattccccgtcgtgaaagagaaagtagattaccccggcatttattgtttacaaacaagctgctcggatattgcaaggaaactgatctgtaatgtatgttagagcaagttttgagatataattagtgaattaattgtgcaagttcataaacacacaggtgatatataatgaatgacaaaaaatgtcttcgttgagctatcttgtgcccccccccccccttcaaatgtgggaggcactagtggtcatctcatacacttgtatgttcagtcccagataggaataggaaaagaaatatgtctttaggattgaatgaatttaattcataatactaattcaaattgtgtagaatacttcaaacaaaacaagtcaatactgcatgggttacaaccatatggaaccatggcaagcagtcttagatttttCATGCATTTTTTTCTTTT--ACAAACATACACAAATAACATTTAAAATA-T-TTAATCCATAGAT-GAAGGCCAGAA------GGGTGT--GGTACTTCCAGTTTTGAAGTT-ATGGA-TCATGAGGAGATTGTACCAGC-TAC-AT-GCAAAGGCTTTGGATGGACAGAGCGTTGGAAAATTG-TGGAACTTGTTGTCTTG-TCAAAG---GGATTATGAGTCTG--CC-AGAAGTGTGG-TCTCCCT--CTTCAGTTCA-TGCATGCAACCACAATTCAAAC---ATAGT-CTTTCT-GCCTTTTAAAGGTT-TTTTTT-TTTGTTTATAT-ACATTC-C-TATAAGTCGG-TACAATTTGTTG--AGA-GCCATTTGCTGGATA-ATGAAGATATCTCA-TTAAC--AGT--GATTTTTTTATGAGTACAGTATT-AGATAACCTGTTTTGATTTTC--AGTTAAAAATGTCAAAAGTTACCCGAAaaagatgaccagttatgatatcagtatcagtaaattaacaaatcttgagctaattgcatgcatttttttcttttacaaacatacacaaataacatttaaaatatttaatccatagatgaaggccagaagggtgtggtacttccagttttgaagttatggatcatgaggagattgtaccagctacatgcaaaggctttggatggacagagcgttggaaaattgtggaacttgttgtcttgtcaaagggattatgagtctgccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaaacatagtctttctgccttttaaaggtttttttttttgtttatatacattcctataagtcggtacaatttgttgagagccatttgctggataatgaagatatctcattaacagtgatttttttatgagtacagtattagataacctgttttgattttcagttaaaaatgtcaaaagttacccgaagcagataatattctatacaattgtgcaat
gi|11 : agtgtgagcttttagtaactagggacgtgcgatttcccgaactaatagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaatgggacgtgcatagacggcaacagatagaagagcgatttgactcccgaacgaaaaatttgtaacaaaaaccagtatggagcccaggaccagaggtgaatttcaaccatatctattcaaaaattggtaagaaaattcgtttgataataattggcaggttattatagcggtctcagagactcaaaattacatatccctagtaaagtaataatactactaatagatcccgacaatgtgttatgtatgtagccatgataaaaatgttagaattattatagtaacagaggatcagtggtaccaaccatcaagatgtgttgagcgattgatccatgttatgttgtttttcagacttctttcaattagagttattccccgtcgtgaaagagaaagtagattaccccggcatttattgtttacaaacaagctgctcggatattgcaaggaaactgatctgtaatgtatgttagagcaagttttgagatataattagtgaattaattgtgcaagttcataaacacacaggtgatatataatgaatgacaaaaaatgtcttcgttgagctatcttgtgcccccccccccccttcaaatgtgggaggcactagtggtcatctcatacacttgtatgttcagtcccagataggaataggaaaagaaatatgtctttaggattgaatgaatttaattcataatactaattcaaattgtgtagaatacttcaaacaaaacaagtcaatactgcatgggttacaaccatatggaaccatggcaagcagtcttagatttttattttttttaaattcattactgataattgtacatgtacatacatgtatgaaaaaagatgaccagttatgatatcagtatcagtaaattaacaaatcttgagctaattgTTTTTCATGAGTACAGTA-TTAGATAACCTGTTTTGATTTTC--AGTTAAAAATGTCAAAAGTTACCTGAAgcagataatattctatacaattgtgcaat
gi|15 : -AACCTGTTTTGGTTTTCCAAG-TGAAAAAA-CAAAgcagataatattctatacaattgtgcaatacagtacggctagtaccagcatggggcatatttgttcttcaagtattgttttcatttcacaggcagcaggatacatcattcttcatatgaaagtagggaagtaacttcatatatatgcatctggatgtggtttagaagagtctcatgatatagacaaaataccagcaccattgaattatggaacctctcaatgcagcattagaa
Alignments
lowQualScore : 111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111111111 2222222 111111 444444444 1 2222222 1 2222222 11111 11111 444444444444444444444444 11 11 11111 11111 33333333333 11 1 11 22 1 1 1111 1 22222222222 11111 22222 333333333333333 111 666666666666666666666666 1 3333333333333333333333 111 111 2222222 1 5555555555 111 1111 2 3333333333333333333333 11 1 1 11 11 1 2222 1111 11 1 11 11111 1 11 222222 11 1 1 1 22222 111111111 3333333333 22222222 333333333333333 111 111 11 11 1 2222 1 1 1 222222 22 2 1 11 1 1 1 22 1 2 2222222 1 2222 2 22 2 1 1 1 1 1 2 1 1 2 1 11 2 1111 2 11 2222 1 111 1 11 2 333333333 1 11
lowQualScore : 5 6666 4 777 555 8888 4 222 4 4 55 777 99 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 7777777777 0 0 0000000 4 4 777 0 111111 55 4 4 777 4 666666666 4 4 4 4 4 4 2 5 55 55 4 7777777 8 2 55 99 4 4 4444444 4 777 8888 11111 777 4 66 4 8 8 11111 888888888888888888888888 8 55 00 4 4 5 0 1 9 5 5 3 5 88 77 44444 4 9999 4 4 1 4 11111 4 66 22222222222 4 4 8 4 777 4 33 4 7777 0 66 55 5 0 0 0 0 5 5 5 5 5 4444 5 5 1 88888888888 5 5 22 777 44444 4 88888 99 222222222222222 444 444444444444444444444444 5 3333333333333333333333 99 1 666 6 99 6 6 666 3333333 1 3 1111111111 6 6 111 6666 3 6 99 8888888888888888888888 6 55 99 99 6 5 6 1 8 8 0 0 11 00 8 8 0 0 4444 4444 6 1 99 55 3 55 6 55555 6 4 66 6 333333 6 44 0 6 0 3 6 00000 0 666666666 0 8 66 8 5555555555 8 99999999 66 8 000000000000000 6 444 444 0 33 33 0 2222 0 5 0 888888 77 2 4 0 7 5 88 0 0 0 2 3 66 33 0 0 9999999 0 0000 0 77 0 3 2 0 0 0 0 5 0 5 0 2 0 5 33 0 4444 0 33 0000 0 111 0 11 0 222222222 0 8 1 11
lowQualScore : . .... . ... ... .... . ... . . .. ... .. . ................................................................................................................ . .......... . . ....... . . ... . ...... .. . . ... . ......... . . . . . . . . .. .. . ....... . . .. .. . . ....... . ... .... ..... ... . .. . . . ..... ........................ . .. .. . . . . . . . . . . .. .. ..... . .... . . . . ..... . .. ........... . . . . ... . .. . .... . .. .. . . . . . . . . . . .... . . . ........... . . .. ... ..... . ..... .. ............... ... ........................ . ...................... .. . ... . .. . . ... ....... . . .......... . . ... .... . . .. ...................... . .. .. .. . . . . . . . . .. .. . . . . .... .... . . .. .. . .. . ..... . . .. . ...... . .. . . . . . ..... . ......... . . .. . .......... . ........ .. . ............... . ... ... . .. .. . .... . . . ...... .. . . . . . .. . . . . . .. .. . . ....... . .... . .. . . . . . . . . . . . . . . .. . .... . .. .... . ... . .. . ......... . . . ..
lowQualScore : 0 1111 0 000 444 5555 0 555 0 0 66 000 55 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 5555555555 8 8 0000000 0 0 000 6 555555 55 0 0 000 0 000000000 0 0 0 0 0 0 0 0 55 55 0 1111111 0 0 55 55 0 0 8888888 0 000 5555 00000 888 4 11 4 9 9 11111 333333333333333333333333 9 00 66 4 4 0 1 4 2 0 0 2 0 22 55 44444 6 4444 4 4 9 4 11111 4 11 77777777777 4 4 9 4 888 4 44 4 0000 0 99 00 0 0 1 0 1 0 4 0 0 0 4444 0 0 9 99999999999 0 0 00 888 88888 4 99999 88 333333333333333 333 222222222222222222222222 5 7777777777777777777777 22 0 555 7 22 7 7 777 7777777 5 3 7777777777 7 7 777 0000 7 7 22 8888888888888888888888 7 88 22 22 7 0 0 0 0 0 0 8 00 88 0 0 0 8 9999 2222 7 0 22 22 3 55 7 00000 7 0 00 7 333333 7 00 8 0 8 2 0 00000 8 444444444 8 0 22 0 0000000000 0 00000000 44 0 666666666666666 0 000 000 8 88 88 0 0000 0 0 0 888888 55 5 0 0 0 5 55 0 0 0 0 0 00 88 0 0 8888888 0 0000 0 55 0 2 5 0 0 0 0 5 0 5 0 5 0 5 88 0 8888 0 88 8888 0 000 6 00 4 000000000 6 0 4 00
consensus : TGTG-AGCTTTTA-G--T-AACTAGG---G-A-CG----T-GCGA---TTT-CCCGAAC-TAACAGACGT---CA--GAAAATCA--TTCGGCCG---A-A----CCTCGG---CGTGATAC-CGGAAC-C-TNTA-------CACAA----TC---GCCGA--------GG--GTGTG---CCGAG---G------GA-CA----------GAAAAT-------GGG-A-CGT---GCAA------AGA--CGG-CAAG-A---G-ATTGAA--GA---AGAG-C-G-AT-TT-GCCT-CC-CGCAA--ACG--AAA-A-----ATTT-GT-AC--AAAAA--C-C-AG--TTA--TG-G---AG----CCC-G--GA---C-CA--GAG-G-TGA-AT-----ATCG---------GAC-C---A-----T-CTA--TTC--AAAAA-TTGGT-AAG-AAAAGTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TTATAG-CGGTCT--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCC-GACA---ATGT-GTA-AA-TGTATG--T-AGCCATGAT-AAAA--TGTTGTG-TAGAA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TTG---GAG-CGA-TTGGATCCAT-GTTA--T-TGTTT-T-TNAG---AAG-TCTCTTC-TTTCGAT---C-TAG-NGTTAATTTCCCCG-T---ATTCCCCGTTGTGAAATGAGAAAGTAGAC------------------------ACAAGACTGCTCG--------AAGGA----A----AC--TNATC--TGT-A--A-TGT-ATGTTGGAGAGCAAG-TTTTTGAGATATA-TTTAGTG----------AA-TAATTGTG-CAAG---TTGA-T--AAACAC-ACAGGTG--ATATAAT-------GAGATTTA------TAATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCNCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-GGAAAGGAAATG---ATGTCTT----TAG-GACTGAAT--GAATTTGGATTCA-TAATACCTAATT-AAATTGTG-TAG-AATACTTCAA-ACAAAA-ACAAGGTCAATA-CTGC-----A-TGGGT-CACAACCATATGGAACCATGGCATGCAGTGTTCAGATTTGTT-----TTTTTTTTTTTTTTTTCTAAATTTC-ATTACTNGTAA-TTGTA----------C-ATGTAC--------ATTAC-AGGTACTGAAA--------AAAAGATTACCAG---TTA---TGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAAGGCCA-AA------GGGTGTCGGGTACTTCCANTTNTGAAGTTTGTGGAACCATGAGGAGGTTGTACCAG-CTA-CAT-GCGAAGGCTTNGGNNGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTCCTGAG---A---TAT-AGTGTC-G--CAGAAGTGTGGTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTGTTTATATAACATCCCTTATA-AGTCGGTTACAATTTGTTG--AGAGGCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTATGAGTACAGTA-T-AGATAACCTGTTTTGGTTTTC--AGTTGAAA---------ATGTC-AAAAGTTA--CCCGAA
Reference ( family-1438 ) : TGTG-AGCTTTTA-G--T-AACTAGG---G-A-CG----T-GCGA---TTT-CCCGAAC-TAACAGACGT---CA--GAAAANCA--TTCGGCCG---A-A----CCTCGG---CGTGGTAC-CGGAAC-C-TTTA-------CACAA----TC---GCCGA--------GG--GTGTG---CCGAA---G------GA-CA----------GAAAAT-------GGG-A-CGT---GCAA------AGA--CGG-CAAG-A---G-ATTGAA-AGA---AGAG-C-G-AT-TT-GCCT-CC-CGCAA--ACG--AAA-A-----A-TT-GT-AC--AAAAA--C-C-AG--TTA--TG-G---AG----CCC-G--GA---C-CA--GAG-G-TGA-AT-----ATCG---------GAC-C---A-----T-CTA--TTC--AAAAA-TTGGT-AAG-AAAAGTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TTATAG-CGGTCT--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCC-GACA---ATGT-GTA-AA-TGTATG--T-AGCCATGAT-AAAA--TGTTGTG-TAGAA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TTG---GAG-CGA-TTGGATCCAT-GTTA--T-TGTTT-T-TNNG---AAG-TCTCTTC-TTTCGAT---C-TAG-NGTTAATTTCCCCG-T---ATTCCCCGTTGTGAAATGAGAAAGTAGAC------------------------ACAAGACTGCTCG--------AAGGA----A----AC--TNATC--TGT-A--A-TGT-ATGTTGGAGAGCAAGTTTTTTAAGATATA-TTTAGTG-------T--AA-TAATTGTG-CAAG---TTGA-T--AAACACAACAGGTG--ATATAAT-------GAGATTTA------TAATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCC-CCCCCTTCCCCCCCCCCCCCNCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTACTGTTCAGTCCCAGATAGGAA-TA-GGAAAGGAAATG---ATGTCTT----TAG-GACTGAAT--GAATTTGGATTCA-TAATACCTAATT-AAATTGTG-TAG-AATACTTCAA-ACAAAANACAAGGTCAATA-CTGC-----A-TAGGT-CACAACCATATG-AACCATGGCATGCAGTGTTCAGATTT-TT-----TTTTTTTTTTTTTTTTTTAAATTTC-ATTACTTGTAA-TTGTA----------C-ATGTAC--------ATTAC-AGGTA-TGAAA--------AAAAGATTACCAG---TTA---TGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAAT-AT-TTAATCCATAGAT-GAAGGCCA-AA------GGGTGT--GGTACTTCCAGTTTTGAAG-TTGTGGAACCATGAGGAGATTGTACCAG-CTA-CAT-GCGAAGGCTTTGGATGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTTC-GAG---A---TAT-AGTGTC-G--CAGAAGTGT-GTCTCCCT--CTTCAGTTCA-TGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTGTTTATAT-ACATCCCTTATA-AGTCGG-TACAATTTGTTG--AGA-GCCATTTGCTGG--A-ATGAAGATATCTCA-TTGAC--AGT--T-TTTTTTTATGAGTACAGTA-T-AGATAACCTGTTTTGGTTTTC--AGTTGAAA---------ATGTC-AAAAGTTA--CCCGAA
gi|1 : TGTG-AGCTTTTA-G--T-AACTAGG---G-A-CG----T-GCGA---TTT-CCCGAAC-TAATAGACGT---CA--GAAAANNN--NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-------NNNNN----NN---NNNNN--------NN--NNNNN---NNNNN---N------GA-CA----------G-AAAT-------GGG-A-CGT---GCAT------AGA--CGG-CAAC-A---G-AT-----AGA---AGAG-C-G-AT-TT-GACT-CC-CG--A--ACG--AAA-A-----ATTT-GTAAC--AAAAA--C-C-AG---TA--TG-G---AG----CCCAG--GA---C-CA--GAG-G-TGA-AT-----TTC----------AAC-CAT-A-----T-CTA--TTC--AAAAA-TTGGT-AAG-AAAATTCG-TTTGATAATAATT-GGCAGG-TTA--TTATAG-CGG--T--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAATAATACTACTA-A-TAGAT-CCC-GACA---ATGT-GT--TA-TGTATG--T-AGCCATGATAAAAA--TGT-----TAGAA-TTAT-TATAGTA-ACAGAGGATCA-GTGGTACCAAC-CA-TCAAGATGTG-TT----GAG-CGA-TT-GATCCAT-GTTATGT-TGTTT-T-TCAG---A------CTTC-TTTCAAT-----TAG-AGT------------T---ATTCCCCGTCGTGAAA-GAGAAAGTAGATTACCCCGGCATTTATTGTTTACAAACAAG-CTGCTCGGATATTGCAAGGA----A----AC--TGATC--TGT-A--A-TGT-ATGTT--AGAGCAAG--TTTTGAGATATA-ATTAGTG-------A--AT-TAATTGTG-CAAG---TTCA-T--AAACAC-ACAGGTGATATATAAT-------G--------------AATGACAAAAAA--TG--TCTT--CG-TTGAGCTATCTT-GTGCCCCCCCCCC-CCC
gi|1 : agCCCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTA-TGTTCAGTCCCAGATAGGAA-TA-GGAAAAGAAAT----ATGTCTT----TAG-GATTGAAT--GAATTTA-ATTCA-TAATAC-TAATTCAAATTGTG-TAG-AATACTTCAA-ACAAAA--CAAG-TCAATA-CTGC-----A-TGGGT-TACAACCATATGGAACCATGGCAAGCAGTCTT-AGATTT-TT-----ATTTTTTTT---------AAATT-C-ATTACTGATAA-TTGTACATGTACATAC-ATGTATGAAAAAAGATGACCAGTTA-TGATATCAGTATCAGTAAATTAACAAATCTTGAGCTAATTGCATGCATTTTTTTCTTTT--ACAAACATACACAAATAACATTTAAAAT-AT-TTAATCCATAGAT-GAAGGCCAGAA------GGGTGT--GGTACTTCCAGTTTTGAAG-TTATGG-ATCATGAGGAGATTGTACCAG-CTA-CAT-GCAAAGGCTTTGGATGGACAGAGCGTTGGAAAATTG-TGGAACTTGTTGTCTTGTCA-AAG---GGATTATGAGTCTG-C--CAGAAGTGTGGTCTCCCT--CTTCAGTTCA-TGCATGCAACCACAATTCAAAC---ATAGT-CTTTCT-GCCTTTTAAAGGTT-TTTTTT-TTTGTTTATAT-ACATTCC-TATA-AGTCGG-TACAATTTGTTG--AGA-GCCATTTGCTGGATA-ATGAAGATATCTCA-TTAAC--AGT--GATTTTTTTATGAGTACAGTATT-AGATAACCTGTTTTGATTTTC--AGTTAAAA---------ATGTC-AAAAGTTA--CCCGAAttcaaatgtgggaggcactagtggtcatctcatacacttgtatgttcagtcccagataggaataggaaaagaaatatgtctttaggattgaatgaatttaattcataatactaattcaaattgtgtagaatacttcaaacaaaacaagtcaatactgcatgggttacaaccatatggaaccatggcaagcagtcttagatttttattttttttaaattcattactgataattgtacatgtacatacatgtatgaaaaaagatgaccagttatgatatcagtatcagtaaattaacaaatcttgagctaattgcatgcatttttttcttttacaaacatacacaaataacatttaaaatatttaatccatagatgaaggccagaagggtgtggtacttccagttttgaagttatggatcatgaggagattgtaccagctacatgcaaaggctttggatggacagagcgttggaaaattgtggaacttgttgtcttgtcaaagggattatgagtctgccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaaacatagtctttctgccttttaaaggtttttttttttgtttatatacattcctataagtcggtacaatttgttgagagccatttgctggataatgaagatatctcattaacagtgatttttttatgagtacagtattagataacctgttttgattttcagttaaaaatgtcaaaagttacccgaagcagataatattctatacaattgtgcaat
gi|10 : agtgtgagcttttagtaactagggacgtgcgatttcccgaactaatagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaatgggacgtgcatagacggcaacagatagaagagcgatttgactcccgaacgaaaaatttgtaacaaaaaccagtatggagcccaggaccagaggtgaatttcaaccatatctattcaaaaattggtaagaaaattcgtttgataataattggcaggttattatagcggtctcagagactcaaaattacatatccctagtaaagtaataatactactaatagatcccgacaatgtgttatgtatgtagccatgataaaaatgttagaattattatagtaacagaggatcagtggtaccaaccatcaagatgtgttgagcgattgatccatgttatgttgtttttcagacttctttcaattagagttattccccgtcgtgaaagagaaagtagattaccccggcatttattgtttacaaacaagctgctcggatattgcaaggaaactgatctgtaatgtatgttagagcaagttttgagatataattagtgaattaattgtgcaagttcataaacacacaggtgatatataatgaatgacaaaaaatgtcttcgttgagctatcttgtgTA-G--T-A-CTAGG---G-A-CG----T-GCGA---TTT-CCCGAAC-TAA-----------A--AAAANNNN--NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-------NNNNN----NN---NNNNN--------NN--NNNNN---NNNNN---N------GA-CA----------GAAA-T-------GGG-A--GT---GCCA------A-A--TGG-CAAG-AAAAG-ATTGAA--------GAG-C-G-AT-TTTGCCT-CCACGCAA---CG--AAA-A-----T-TT-GT-AC--AAACA--A-C-AG--TT------G---AG----CCC-A--GA---C-CA--GAG-G-TGA-AT-----ATC----------GACGC---A-----T-ATA--TTT--AAAAA-TTGGT-AAG-AAAAGT--TTTTGAT-AC-ATC-GACAGGATTATATTATAG-CGGTCT--C---A----A-GA-CTCATAATTACATATC-C-----CTAGTTAA--AGTAG---------TACATTAGAT-CC---ACAAATATGT-GTA-AG-AGTATGCTT-AGCTATgcagataatattctatacaattgtgcaat
gi|11 : gttgtaTTTTTCATGAGTACAGTA-TTAGATAACCTGTTTTGATTTTC--AGTTAAAA---------ATGTC-AAAAGTTA--CCTGAA
gi|12 : TGCG-AGCTTTTA-G--T-AACTAGG---G-A-CC----T-GTGA---TTT-CCCACAC-TAACAGACGT---CA--GAAAANNN--NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-------NNNNN----NN---NNNNN--------NN--NNNNN---NNNNN---N------GA-CA----------GAAAAT-------GGG-A-CGT---GCAA------AGA--TGG-CATG-A---G-ATT-----GA---AGAG-C-G-AT-TT-GCCT-CC-CGCAA--ACG--AAA-A-----ATTT-GT-AC--AAAAA--C-T-AG---TA--TG-G---AG----CCC-gcagataatattctatacaattgtgcaatacagtacggctagtaccagcatggggcatatttgttcttcaagtattgttttcatttcacaggcagcaggatacatcattcttcatatgaaagtagggaagtaacttcatatatatgcatctggatgtggtttagaagagtctcatgatatagacaaaataccagcaccattgaattatggaacctctcaatgcagcattagaa
gi|13 : atgag---ATGTCTT----TAG-AACTGAAT--GAATTTG-ATTCA-CAATAC-TATTC-AAATTGTG-TAG-AATACTTCAA-ACAAAA-ACAA-ACCAGTA-CTGC-----A-TGGGT-CACAACCATG-G-AACCATGGCATGCAGTGaagac
gi|14 : tGTTTAAATTT-TTAATTTTTTTTTTTTTTTTTTTTTAAATCTCTATTAC--AGAG-AGGTA----------C-ATGTAC--------A-TGC-AGGT--TGAAG--------AA------ATCAA---TGA---TGATATCATcagtgcaaaactggtagacaaatcaaattaatatt
gi|15 : tgacaagcgcagaatgatgacatattttagtgaaattcGATAACCTGTTTTGGTTTTCCAAG-TGAAAAAACAAAAGATGTCAAAAAGTTAACCCCGAA
gi|16 : G---AAG-TCTCTTC-TTTCGATA--A-TAG-AGTTAA--TCCCCGTT---ATTCCCCGTTGTGgcaaataatattgt
gi|2 : tTGTG-AGCTTTTA-G--T-AACTAGG---G-A-CG----T-GCGA---TTT-CCCGAAC-TAACAGACGT---CA--GAAAANNN--NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-------NNNNN----NN---NNNNN--------NN--NNNNN---NNNNN---N------GA-CA----------GAAAAT-------GGG-A-CGC---GCAA------AGA--CGA-CAAG-A---G-ATTGAACAGATTGAGAG-C-G-AT-TT-GCCT-CC-CGCAA--ACG--AAC-A-----A-TT-GT-AC--AAAAAA-C-CGAG--TTA--TGCG---GG----CCC-A--GA---CACA--GAG-G-TGA-AT-----ATCG---------GAC-T---A-----T-CTG--TTAGAAAAAA-TCGGT-AAG-AAA-GTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TCATA--CGGTCTATCTCAG----G-GA-CTCAAAAT-AC-TATC-C-----CTAG-TAA--AGTAG----------A-A-TAGAT-CCC-GACA---ATGT-GCAGAA-TGTATG--T-AGCCATCAT-AAAAC-TGTTGTGGTAGAA-TTCTATATAGTACACAAGGAATCA-GTGGTATCAAC-CA-TCAAGATGTG-TGG---GAG-CGA-TTGGATCCATTGTTA--TATGTTT-T-TGTG---AAG-TCTCTTC-TTTCGAT---C-TAG-CATTAATTTCCCCG-T---ATTCCCCGTTTTGAAATGAAAAAGTAGAC------------------------ACAAGATTGCTCG--------AAGGA----A----AC--TTATC---GT-A--A-TGT-ATGTTGGAGAGCAAGTT----ACGATATA-TTTAGTG----------AA-TAATTGGG-CAAG---TTGA-T--AAACACAACAG-TG--ATATAAT-------GAGATTTA-------AATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGCTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCACCCCCCCCCCCCTCAAATGTGG-GAGGC-A-TAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-G-AAAGGAAATG---ATGTCTT----TAG-GACGGAAT--GAATTTGGATTCAGTAATACCTAATT-AAATTGTGCTAGCAATACTTCAA-ACAAAACACAAGGTCAATA-CTG------A-TAAG--CACAACCATATG-AACCATGGCATGCAGTGTTCAGATTTGTT-----TTTTTTTTTTTTTTTTCTAAATTTC-ATTACTTGTAA-TTGTA----------C-ATGTAC--------ATTAC-AGGTACTGAAA--------AAAAGATTACCAG---TTA---TGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAA-GCCA-AA------GGGTGTCGAGTACTTCCATTTATGAAGTTTGTGGAACCA-GAGGAAG--GTACCAG-CTA-CAT-GTGAAGGCTTGAGCGGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTTCTGAG---A---TAT-AGTGTC-G--CAGAAGTGT-GTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTG-TTATATAACATCCTTTATA-AGTCGGTTACAA-TTGTTG--AGAGGCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTAT-AGTACAGTA-T-AGA-AACCTGTTTTGGTTTTC--AG-TGAAA---------ATG-C-AAATATTA--CCCGAA
gi|3 : GTGTAGCTTTTA-G--T-ACTTAGG---G-A--G----T-GCGA---TTTTCCCGAAC-TAACAGACGT---CAACGAAAATCA--TTCGGCCG---A-A----CCTCGG---CGTGGTAC-CGGAAC-C-TTTA-------CACAA----TC---GCCGA--------GG--GTGTG---CCGAA---GT-----GA-CA----------G-AAAT-------GGG-A-CGT---GCCA------AGA--CGA-CAAG-----G-ATTGAA---G---AGGG-C-G-AT-TT-GCCTGCC-CG-AA--ACGGTAAACA-----ATTT-GT-AC----AAA--CGC-AG---TA--TG-G---AGGTCTCCA-G--GA---T-CA--GAG-G-TGAGAT-----ATTGA--------GAC-CA--A-----T-CTG--TTCA-AAAAA-TTGGT-AAA-GAAAATAGTTTGAATATA-ATC-GGC-GG-TTA--TTATAG-CGG--T--CTCAG----ATAA-CTCAAAAAT-CACATC-C-----CTAG-TAA--AGTA----------TA-A-TAGATCCCC-GACA---A-GT-GT--AA-TGTATG--T-AG-CATGAT-AAAA--TCGTGT--TAGAA-TTCT-TATAGTA-AC-AGGAATCA-GTGGTATCAACGCA-TCAAGATGTG-TTG---AGGCCGA-TT-GATCCAA-GTTA----TGTTG-T-TGAGTCTAAA-T-TCTTT-TTTCGAT-----TAGACGTT-ATCTCCGCG-T---ATTCCCGTTTGTGAAAT--GAAAGTAGAC------------------------ACAAG-CTGCTCG--------GAGA--------------TGATC--TGTAA--A-TGT-ATGTTG--GAGCAAG-TTTTTGAGATATATTTTAGTG-------TGGAATTAATTGTG-CAAG---TTGA-TA-AAACAC-ACAGGTG--ATATTAT-------GAAGTTTA------T-ATGAA-AACAAT-TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCC-CC
gi|3 : aatgaCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACAACTGTA-TGTTTAGTCC-AGATAGGAAATAAGGAAAGGAAAT-----TGTCTT----TAG-GA-TGAAT--GA-TTTGA--TCA-TAATACT--ATT-AAATTGTG-T-G-AATACTTCAACACATAAAACAAG-TCAATA-CTGCCATATA-TAGGTACA-AACCATATGGAACTATGGCATGC-GTGTT-AGATTT-TT-----TTAA--------------AAAATTC-ATTACTGGTAAATTGTA----------CCATGTAC--------AT-AC-AGGTA----GA--------AAAAGATTACCAG---TTA---TGA-ATCATGCATTTTTTC--TTTTAACAAATATACACAAT-AACATTTAACAT-AT-TTAATCCATAGATTGAAGGCCA-GATCGAAGGGGTGT--GGTACTTCAAGTTTTGAAG-TTGTGGGACCATGAGGAGATTGTACCAGCCTACCATCGTGAAGGCTTTGGATGAACAGATAGTTGGAGAATTCGTGGAACTTGTT-TTCTGTCC-GAGGGTA---TGT-GGGGTCTGGCCAGAAGTGTGGTCTCCCT--CTTCAGTTCA-TGCATGCAACCACAATTCAA--CATACAGTCCTTTCTGTCAATTTAAAGGTATTTTTTATTTTGTTTATAT-ACATCCC-TATATAGTC-G-TACAATTTGTTGCAAGA-GCCATTTGCTGG--ATAAAAAGATATCTCA-TTGACCAAGTGGT-TTTTTTTATGAGTAttcaaatgtgggaggcactagtggtcatctcatacaactgtatgtttagtccagataggaaataaggaaaggaaattgtctttaggatgaatgatttgatcataatactattaaattgtgtgaatacttcaacacataaaacaagtcaatactgccatatataggtacaaaccatatggaactatggcatgcgtgttagatttttttaaaaaattcattactggtaaattgtaccatgtacatacaggtagaaaaagattaccagttatgaatcatgcattttttcttttaacaaatatacacaataacatttaacatatttaatccatagattgaaggccagatcgaaggggtgtggtacttcaagttttgaagttgtgggaccatgaggagattgtaccagcctaccatcgtgaaggctttggatgaacagatagttggagaattcgtggaacttgttttctgtccgagggtatgtggggtctggccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaacatacagtcctttctgtcaatttaaaggtattttttattttgtttatatacatccctatatagtcgtacaatttgttgcaagagccatttgctggataaaaagatatctcattgaccaagtggttttttttatgagta
gi|4 : aatgagtgtagcttttagtacttagggagtgcgattttcccgaactaacagacgtcaacgaaaatcattcggccgaacctcggcgtggtaccggaacctttacacaatcgccgagggtgtgccgaagtgacagaaatgggacgtgccaagacgacaaggattgaagagggcgatttgcctgcccgaaacggtaaacaatttgtacaaacgcagtatggaggtctccaggatcagaggtgagatattgagaccaatctgttcaaaaaattggtaaagaaaatagtttgaatataatcggcggttattatagcggtctcagataactcaaaaatcacatccctagtaaagtataatagatccccgacaagtgtaatgtatgtagcatgataaaatcgtgttagaattcttatagtaacaggaatcagtggtatcaacgcatcaagatgtgttgaggccgattgatccaagttatgttgttgagtctaaattcttttttcgattagacgttatctccgcgtattcccgtttgtgaaatgaaagtagacacaagctgctcggagatgatctgtaaatgtatgttggagcaagtttttgagatatattttagtgtggaattaattgtgcaagttgataaaacacacaggtgatattatgaagtttatatgaaaacaattttcttcgttgagctatcttggtgcT--CTCAG----G-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG----------A-A-TAGAT-CCC-GACA---ATGT-GCAGAA-TGTATG--T-AGCCATCAT-AAAAC-TGTTGTGGTAGAA-TTCTATATAGTACACAAGGAATCA-GTGGTATCAAC-CA-TCAAGATGTG-TGG---GAG-CGA-TTGGATCCATTGTTA--TATGTTT-T-TGTG---AAG-TCTCTTC-TTTCGAT---C-TAG-CATTAATTTCCCCG-T---ATTCCCCGTTTTGAAATGAAAAAGTAGAC------------------------ACAAGATTGCTCG--------AAGGA----A----AC--TTATC---GT-A--A-TGT-ATGTTGGAGAGCAAGTT----ACGATATA-TTTAGTG----------AA-TAATTGGG-CAAG---TTGA-T--AAACACAACAG-TG--ATATAAT-------GAGATTTA-------AATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGCTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCACCCCCCCCCCCCTCAAATGTGG-GAGGC-A-TAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-G-AAAGGAAATG---ATGTCTT----TAG-GACGGAAT--GAATTTGGATTCAGTAATACCTAATT-AAATTGTGCTAGCAATACTTCAA-ACAAAACACAAGGTCAATA-CTG------A-TAAG--CACAACCATATG-AACCATGGCATGCAGTGTTCAGATTTGTT-----TTTTTTTTTTTTTTTTCTAAATTTC-ATTACTTGTAA-TTGTA----------C-ATGTAC--------ATTAC-AGGTACTGAAA--------AAAAGATTACCAG---TTA---TGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAA-GCCA-AA------GGGTGTCGAGTACTTCCATTTATGAAGTTTGTGGAACCA-GAGGAAG--GTACCAG-CTA-CAT-GTGAAGGCTTGAGCGGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTTCTGAG---A---TAT-AGTGTC-G--CAGAAGTGT-GTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTG-TTATATAACATCCTTTATA-AGTCGGTTACAA-TTGTTG--AGAGGCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTAT-AGTACAGTA-T-AGA-AACCTGTTTTGGTTTTC--AG-TGAAA---------ATG-C-AAATATTA--CCCGAA
gi|5 : TG-AGCTTTTA-G--T-AACTAGG---GCG-CG----T-GC-A---TTT-CCCGAAC-TAACAGACGT---CA--GAAAANNN--NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-------NNNNN----NN---NNNNN--------NN--NNNNN---NNNNN---NNNNNNNGA-CA----------GAAAAT-------GGG-AACGT---GCAAGAGTCAAGA--CGG-CAA--A---G-ACGGA-----------------------GCCT-CCGCGCAA--ACG--AAA-C-----T-TTTGTCAC--AAAAA--T-C-AGCGTAA--TG-G---AG----CCA-G--GA---C-CA--GAG-GGTGG-AT-----GTGGTGTCATAGTGAA-C---A-----TTCTA--TTC--AAAGA-TTGGTTAAG-AAAAGTTGTTT-GATAAT-ATCTGGCAGG-TTAT---ATAG-CGGTC-----AAG----A-GA-CTAAAAAT-ACA-ATC-C-----CTAG-TAA----------------TG-A-T---C-CCC-GACA---ATGT-GTA-AA-TGTATG-----ACCATAAT-AAAAATTGTTTTT-GAACA-TTCT--------------GAATTAGGTGGTA-TAAC-CA-TCAAGATGTG-TTG---AAG-CAA-TTG--TTC-----------TGACT-T-CAAG---AAGTTCTCATC-TTTCGAG---CTTAG-TGCTTATTCTCCCG-TGTAATTT----TTGTAA---------------------------------------ACAAAACTGCTCG----------GGG----ATTGCACAAGGATC--TGT-A--ATTGT-ATGTTG--GAGCAG---TTTTGAGATATATTTTAGTGAATATGTC--AA-TGTTTGTG-C-AG---TTGATT--TACCAC-ACAGGTG--ATATAATCATCAACTAGATTGAATTCACTAATGAC--ACAAATTT--TCTTACCGTTTGAGCTATCTTTGTGCCCCCCCCCC-CCCCCTTC
gi|5 : attaaggtttgtactggtgtCCCCCCCCCCCCCCCTTCAAATGTGGCGAAGCAACT-GTTTGGTCATCTCATACACTTGTAC-GTTCAGTGCCAGATAGGAA-TA-GGAA--GAAACAAGTATGTCCTTTAATAGAAACTGAATAGAAATTTGTGTTCA-TAATACTAAATC-AAATTGTG--AG-AATACTTCAA-ACCAAAAACAA-GTCAATACCTGC-----ACTGGGT-CAC-ACCATaaatgtggcgaagcaactgtttggtcatctcatacacttgtacgttcagtgccagataggaataggaagaaacaagtatgtcctttaatagaaactgaatagaaatttgtgttcataatactaaatcaaattgtgagaatacttcaaaccaaaaacaagtcaatacctgcactgggtcacaccatggattgctagtgcaagtgcaaaactggtagacaaatcaaattttattgct
gi|6 : attaaggtttgtactggtgttgagcttttagtaactagggcgcgtgcatttcccgaactaacagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaaatgggaacgtgcaagagtcaagacggcaaagacggagcctccgcgcaaacgaaacttttgtcacaaaaatcagcgtaatggagccaggaccagagggtggatgtggtgtcatagtgaacattctattcaaagattggttaagaaaagttgtttgataatatctggcaggttatatagcggtcaagagactaaaaatacaatccctagtaatgatccccgacaatgtgtaaatgtatgaccataataaaaattgtttttgaacattctgaattaggtggtataaccatcaagatgtgttgaagcaattgttctgacttcaagaagttctcatctttcgagcttagtgcttattctcccgtgtaatttttgtaaacaaaactgctcggggattgcacaaggatctgtaattgtatgttggagcagttttgagatatattttagtgaatatgtcaatgtttgtgcagttgatttaccacacaggtgatataatcatcaactagattgaattcactaatgacacaaattttcttaccgtttgagctatctttgtg-AGCTTTTAAG--T-AACTAGG---G-AGCGGCGTT-GCGAATGTTT-C--------AACCGACAC---TAT-AAAAATCAC-TTCGGGCGCGCACA----CCTCGG---C-TGATA--CGGAAC-CATATAG------GACAAT---TC---ATCGACCTTCGATGGGTGTGTG---CCGAGT--G------GA-CA----------GAAAATGTC----GGG-A-CAT---GCAA------AGA--CGG-CAAG-A---G-ATTGAA-AG-----GAG-C-GCAT-TT-GCCT-CCGCGCAAAGACG--AAC-A-----ATTT-GTGACCAAAAAA--C-C-AG---TG--TG-GGGAAG----CCTAG--GATTTC-CAAGAAG-G-TGA-AT-----ATTG---------G-C-CATAA-----T-CTGT-TTC--AAAAATTTGGC-AAGAAAAAGTCGTGTTGATAAT-ATC-GGCAGG-TTAT-CTATAGACGGT-T--CTCAG----A-GACCTCAAAATTACATATTGC-----CTAG-TAAGTAGTAAGCGAT----TA-A-TAGATCCCC-GACA---ATGT-GTA-AATTGTATG--TAAGCCATGAT-AAAA---AATGTG-TAGAATTTCT-TATAGTA-ACAAG--ATC--GTGGTAGCAAC-CA-TCAAGAT-TG-TTGTTTGAG-CGACTTTGATCCAT-GTTA----TGTTTGTGTTCA---AAG-TCTCTTC-TTTCGA------TAG-AGTT-AT-------------TTCCCCGTTGTGAAATTTGAAAGTAGAC------------------------ACAAG-CTGCTCG--------GAAGATTGCA----AC--TTATCTATGT-ATTA-TGTAATGTTTGTGAGCGAAGTTTTGAGGATATA-GTTAGTG-------TA-AA-TAATTGTGACAAAGTTTTGA-CTAAAACAC-ACAGGTG--ATATAAT-------GA-ATTTAT-----TAATGAA-AACAA--TTTGTCTT--CG-TTggattgctagtgcaagtgcaaaactggtagacaaatcaaattttattgct
gi|7 : GTG-AGCTTTTA-AGTT-AACTAGG---G---TG----T-GCGA---TTT-CCCGAAC-TAA------------------AANN--NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-------NNNNN----NN---NNNNN--------NN--NNNNN---NNNNN---N------GA-CA----------GAAA-T-------GGG-A-CGT---GCCA------AGA--CGG-CAAG-A---G-ATTGAA-GG---------C-G-AT-TT-GCCT-CC-CGCAA--ACG--AAA-A-----A-TTTGT-AC--ACAAA--C-C-AG--T-A--TG-G---AG----CCA-G--GA---C-CA--GAG-G-TGA-AT-----ATCG---------A---C---A-----TATTA--TTC--AAAAA-TTGGT-AAG-AAAAGTCGTTT-GATAAT-ATT-GGCAGG-TTAT-TTA--G-CGGTCT--C--AC----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCCCGACA---ATGT-G----A-TGTATG--T-AGCCATGATAAAAA--TGTTGT--TAGTA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TT----GAG-CGA-TT-GATCCAT-G-----T-TGTTT-T-TCAG---A------CTTC-TTTCGAT-----TAG-AGTTA----------------TTCCCGTTGTGAAA-GAGAAAGTAGA
gi|8 : TG-AGCTTTTA----T-AAC---A---G-A-C-----T--CGA---TTT-CC-GAAC-TAATTGACGT---CA--GAAAANNN--NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-------NNNNN----NN---NNNNN--------NN--NNNNN---N--------------GA-CA-----------AAAAT-------GGA-G-CG-------G------AGA----G-CAAGGA---G-ATTGAA--------GAG-CAG-AT-TT-GCT---C-CGCAA--ACG--AAA-T-------TT-GT-AC--AAAAA--C-C-AG--T-A--TG-G---AG----CCA-G--GA---C-CA--GTGTG-T----T-----ATCG----------ACAT---A-----T-TCAG-TTC--AAACA-TTG-T-CAG-AA--GTCGTT---GTAAT-ATT-GGC--G-TTAT-TACTA--CG---T--CTCAGGAGGA-GA-CTCAAAATTACATACC-CTATACCTAG-TAA--AGT-G---------TA-A-TAGAT-CCC-G-CA---ATGTTGTA-AA-TGTATG--T-G--CATGAT-AAAA--TGTTGT--TAGAA-TTTT-TAGAA-----AAGGAATCA-GTGGTACCAAC-CAGTCAAGATGTGTTTT---AAG-C---TTGGATCC----TTG--T-TGTTT-T-TCAG---A------CTTCTTTTCGATTAAC-TAG--GTTA--TTCCC
gi|9 : gtatgagtgtTTA-G--TCAACTAGGCGGA-A-CG----TTGCAACC-TTT-CCCGAACTTAATAGACGTAAACA--G-AAATCATCTTC-ACCG---A-ATCACCCTCGGGCCCATGATACACAGACCAC-TATACGTCAGGCAGAATGATTCCTGGCCGA--------AGTAGT-TGCCTCCGAGTATG------GATCATTGGATGCGAGAAAATAAGCAGAGGGCA-CGTAGCACAA------AGAATCGGTC--G-A---GTATTGAA---A---CGAGCC-G-ATGTT-GC---TC-CG-AA--ACG--AAA-AGATTTA-TT-GT-AC--AAAAATTC-C-GA--GTACTTG-G---AT----CCC-AGCGA---C-CA--GAG-GTTGACATTAAGAATC----------GAC-C---ATATATT-CTATCTTC--AAAAA-TTGGT-AA
Alignments
lowQualScore : 111 1111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777 1111111 111111 2222222222 1 1 2222222 11111 444444444444444444444444 11 11111 11111 33333333333 11 1 11 22 1 1 1111 1 22222222222 11111 22222 333333333333333 111 666666666666666666666666 1 3333333333333333333333 111 111 111111 1 111 1 111111111 111 1111 1 3333333333333333333333 11 111 1 11 11 1 2222 1111 1 11111 1 11 222222 11 1 1 33333333333 11 11 11 11 1 222 1 1 1 222222 11 1 1 11 1 1 1 22 1 111 11111 1 11 1 1 11 1 1 1 1 1 1 1 1 1 11 1 11 1111 1 11 2222 1 111 1 11 2 333333333 1 11
lowQualScore : 5 6666 4 777 999999 8 222 4 4 55 777 99 55 66 22 5555555555 99999 66 0 77777777777777777777777777777777777777777777777777777777777777777777777777777 777 0 0 3333333 777 4 4 777 0 111111 55 4 4 777 4 9999999999 8 4 4 4 44 2 5 55 55 7777 777 2 55 99 4 4 4444444 4 777 8888 99 66 777 4 66 4 4 4 8 11111 888888888888888888888888 4 66 4 00 4 4 55 1 9 5 5 3 5 88 77 44444 4 9999 4 4 1 4 11111 4 66 22222222222 4 4 8 4 777 4 33 4 7777 0 66 55 5 0 0 0 0 5 5 5 5 5 4444 5 5 1 88888888888 888 1 777 44444 4 88888 99 222222222222222 444 444444444444444444444444 5 3333333333333333333333 99 1 666 6 99 6 6 666 6 3 777777 3 111 99 3 999999999 6 111 6666 3 6 99 8888888888888888888888 6 55 99 99 6 5 555 1 8 8 0 0 11 00 8 8 0 0 4444 4444 6 1 99 99 3 77 6 55555 6 6 6 3 66 6 333333 6 44 0 0 3 0 00000000000 1 1 6 8 1 88 8 11 55 5 0 0 0 33 33 0 111 0 5 0 888888 77 1 1 5 3 5 88 0 0 0 2 1 22 33 0 666 88888 0 33 0 5 88 5 3 2 0 0 0 0 5 5 5 0 11 5 22 4444 5 33 0000 0 111 0 11 0 222222222 0 8 1 11
lowQualScore : . .... . ... ...... . ... . . .. ... .. .. .. .. .......... ..... .. . ............................................................................. ... . . ....... ... . . ... . ...... .. . . ... . .......... . . . . .. . . .. .. .... ... . .. .. . . ....... . ... .... .. .. ... . .. . . . . ..... ........................ . .. . .. . . .. . . . . . . .. .. ..... . .... . . . . ..... . .. ........... . . . . ... . .. . .... . .. .. . . . . . . . . . . .... . . . ........... ... . ... ..... . ..... .. ............... ... ........................ . ...................... .. . ... . .. . . ... . . ...... . ... .. . ......... . ... .... . . .. ...................... . .. .. .. . . ... . . . . . .. .. . . . . .... .... . . .. .. . .. . ..... . . . . .. . ...... . .. . . . . ........... . . . . . .. . .. .. . . . . .. .. . ... . . . ...... .. . . . . . .. . . . . . .. .. . ... ..... . .. . . .. . . . . . . . . . . . .. . .. .... . .. .... . ... . .. . ......... . . . ..
lowQualScore : 0 1111 0 000 999999 0 555 0 0 66 000 55 55 99 99 5555555555 00000 77 4 99999999999999999999999999999999999999999999999999999999999999999999999999999 000 8 8 0000000 000 0 0 000 6 555555 55 0 0 000 0 8888888888 0 0 0 0 88 0 0 55 55 2222 000 0 55 55 0 0 8888888 0 000 5555 66 11 888 4 11 4 4 4 9 11111 222222222222222222222222 4 11 4 66 4 4 11 4 2 0 0 2 0 22 55 44444 6 4444 4 4 9 4 11111 4 11 77777777777 4 4 9 4 888 4 44 4 0000 0 99 00 0 0 1 0 1 0 4 0 0 0 4444 0 0 9 99999999999 888 0 888 88888 4 99999 88 333333333333333 333 222222222222222222222222 5 7777777777777777777777 22 0 555 7 22 7 7 777 7 2 222222 3 777 22 3 333333333 7 777 0000 3 7 22 8888888888888888888888 7 88 22 22 7 0 444 0 0 0 0 8 00 88 0 0 0 8 9999 2222 7 0 22 55 3 22 7 00000 7 7 7 3 00 7 333333 7 00 0 8 2 8 66666666666 0 4 0 0 0 88 0 44 88 6 8 6 8 88 88 0 555 0 0 0 888888 55 0 0 5 2 5 55 0 0 0 0 0 00 88 0 000 55555 0 88 0 0 00 0 2 5 0 0 0 0 5 5 5 0 88 5 55 8888 0 88 8888 0 000 6 00 4 000000000 6 0 4 00
consensus : TGTG-AGCTTTTA-G--T-AACTAGG---G-A----CGT-GCGA---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ATCA-TTCGGCCG---A-A----CCTCGG---CGTGATAC-CGGAAC-C-TNTAC-------ACAAT-----C--GCCGA---------GG--GTGTGCC---GAG-----------G------GAC---AGAAAAT-------G---GG-A-CGTG---CAA------AGA--CGG-CAAG-A---G-ATTGAA--GA---AGAGC-G-AT-TT-GCCT-CC-CGCAAA--CG--AAA-A-ATTT---GT-AC--AAAAA--C-C-AG--TTA--TG-G---AG----CCC-GG--A---C-CAG--AG-G-T-GA-AT-----ATCG---------GAC-C--AT-----CTA-T--T-C--AAAAATT-GGT-AAGAAAA-GTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TTATAG-CGGTCT--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCC-GACA---ATGT-GTA-AA-TGTATG--T-AGCCATGAT-AAAA--TGTTGTG-TAGAA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TTG---GAG-CGA-TTGGATCCAT-GTTA--T-TGTTT---TTNAG---AAG-TCTCTTC-TTTCGAT---C-TAG-NGTTAATTTCCCCG-T---ATTCCCCGTTGTGAAATGAGAAAGTAGAC------------------------ACAAGACTGCTCG--------AAGGA----A----AC--TNATC--TGT-A--A-TGT-ATGTTGGAGAGC-AAGTTTTTGA-GATATA-TTTAGT---G--AA-TA----A----TTGTG-CAAG---TTGA-T--AAACACA-CAGGTG--ATATAAT-------GAGATTTA------TAATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCNCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-GGAAAGGAAATG---ATGTCTT----TAG-GACTGAAT--GAATTTGGATTCA-TAATACCTAATT-AAATTGTG-TAG-AATACTTCAA-A-CA-AAA-ACAAGGTCAATA-CTGC-----A-TGGGT-CACAACCATATGGAACCATGGCATGCAGTGTTCAGATTTGT----TTTTTTTTTTTTTTTTTCTAAATTTC-ATTACTGGTAA-TTGTAC-ATGTACATTACAGGTACTGAAAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAAGGCCA-AA------GGGTGTCGGGTACTTCCANTTNTGAAGTTTGTGGAACCATGAGGAGGTTGTACCAGC-TAC-AT-GCGAAGGCTTNGGNNGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTC-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGTGGTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTGTTTATATAACATCCCTTATA-AGTCGGTTACAATTTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTATGAGTACAGTA-T-AGATAACCTGTTTTGGTTTTC--AGTTGAAA---------ATGTC-AAAAGTTA--CCCGAA
Reference ( family-1438 ) : TGTG-AGCTTTTA-G--T-AACTAGG---G-A----CGT-GCGA---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ATCA-TTCGGCCG---A-A----CCTCGG---CGTGATAC-CGGAAC-C-TNTAC-------ACAAT-----C--GCCGA---------GG--GTGTGCC---GAG-----------G------GAC---AGAAAAT-------G---GG-A-CGTG---CAA------AGA--CGG-CAAG-A---G-ATTGAA--GA---AGAGC-G-AT-TT-GCCT-CC-CGCAAA--CG--AAA-A-ATTT---GT-AC--AAAAA--C-C-AG--TTA--TG-G---AG----CCC-GG--A---C-CAG--AG-G-T-GA-AT-----ATCG---------GAC-C--AT-----CTA-T--T-C--AAAAATT-GGT-AAGAAAA-GTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TTATAG-CGGTCT--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCC-GACA---ATGT-GTA-AA-TGTATG--T-AGCCATGAT-AAAA--TGTTGTG-TAGAA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TTG---GAG-CGA-TTGGATCCAT-GTTA--T-TGTTT---TTNAG---AAG-TCTCTTC-TTTCGAT---C-TAG-NGTTAATTTCCCCG-T---ATTCCCCGTTGTGAAATGAGAAAGTAGAC------------------------ACAAGACTGCTCG--------AAGGA----A----AC--TNATC--TGT-A--A-TGT-ATGTTGGAGAGC-AAGTTTTTGA-GATATA-TTTAGT---G--AA-TA----A----TTGTG-CAAG---TTGA-T--AAACACA-CAGGTG--ATATAAT-------GAGATTTA------TAATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCNCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-GGAAAGGAAATG---ATGTCTT----TAG-GACTGAAT--GAATTTGGATTCA-TAATACCTAATT-AAATTGTG-TAG-AATACTTCAA-A-CA-AAA-ACAAGGTCAATA-CTGC-----A-TGGGT-CACAACCATATGGAACCATGGCATGCAGTGTTCAGATTTGT----TTTTTTTTTTTTTTTTTCTAAATTTC-ATTACTNGTAA-TTGTAC-ATGTACATTACAGGTACTGAAAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAAGGCCA-AA------GGGTGTCGGGTACTTCCANTTNTGAAGTTTGTGGAACCATGAGGAGGTTGTACCAGC-TAC-AT-GCGAAGGCTTNGGNNGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTC-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGTGGTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTGTTTATATAACATCCCTTATA-AGTCGGTTACAATTTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTATGAGTACAGTA-T-AGATAACCTGTTTTGGTTTTC--AGTTGAAA---------ATGTC-AAAAGTTA--CCCGAA
gi|1 : TGTG-AGCTTTTA-G--T-AACTAGG---G-A----CGT-GCGA---TTT-CCCGAACT-AATAGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNNN---NNN-----------N------GAC---AG-AAAT-------G---GG-A-CGTG---CAT------AGA--CGG-CAAC-A---G-AT---A--GA---AGAGC-G-AT-TT-GACT-CC-CG--AA--CG--AAA-A-ATTT---GTAAC--AAAAA--C-C-AG---TA--TG-G---AG----CCCAGG--A---C-CAG--AG-G-T-GA-AT-----TTC----------AAC-CATAT-----CTA-T--T-C--AAAAATT-GGT-AAGAAAA-TTCG-TTTGATAATAATT-GGCAGG-TTA--TTATAG-CGG--T--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAATAATACTACTA-A-TAGAT-CCC-GACA---ATGT-GT--TA-TGTATG--T-AGCCATGATAAAAA--TGT-----TAGAA-TTAT-TATAGTA-ACAGAGGATCA-GTGGTACCAAC-CA-TCAAGATGTG-TT----GAG-CGA-TT-GATCCAT-GTTATGT-TGTTT---TTCAG---A------CTTC-TTTCAAT-----TAG-AGT------------T---ATTCCCCGTCGTGAAA-GAGAAAGTAGATTACCCCGGCATTTATTGTTTACAAACAAG-CTGCTCGGATATTGCAAGGA----A----AC--TGATC--TGT-A--A-TGT-ATGTT--AGAGC-AAG-TTTTGA-GATATA-ATTAGT---G--AATTA----A----TTGTG-CAAG---TTCA-T--AAACACA-CAGGTGATATATAAT-------G--------------AATGACAAAAAA--TG--TCTT--CG-TTGAGCTATCTT-GTGCCCCCCCC---CCCCCTTC
gi|1 : agCCCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTA-TGTTCAGTCCCAGATAGGAA-TA-GGAAAAGAAAT----ATGTCTT----TAG-GATTGAAT--GAATTT-AATTCA-TAATA-CTAATTCAAATTGTG-TAG-AATACTTCAA-A-C--AAA-ACAA-GTCAATA-CTGC-----A-TGGGT-TACAACCATATGGAACCATGGCAAGCAGTCTT-AGA--------------TTTTTATTTTTTTTAAA-TTC-ATTACTGATAA-TTGTAC-ATGTACA-TACATGTA-TG-AAAAAAGATGACCAGTTATGATATCAaaatgtgggaggcactagtggtcatctcatacacttgtatgttcagtcccagataggaataggaaaagaaatatgtctttaggattgaatgaatttaattcataatactaattcaaattgtgtagaatacttcaaacaaaacaagtcaatactgcatgggttacaaccatatggaaccatggcaagcagtcttagatttttattttttttaaattcattactgataattgtacatgtacatacatgtatgaaaaaagatgaccagttatgatatcagtatcagtaaattaacaaatcttgagctaattgcatgcatttttttcttttacaaacatacacaaataacatttaaaatatttaatccatagatgaaggccagaagggtgtggtacttccagttttgaagttatggatcatgaggagattgtaccagctacatgcaaaggctttggatggacagagcgttggaaaattgtggaacttgttgtcttgtcaaagggattatgagtctgccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaaacatagtctttctgccttttaaaggtttttttttttgtttatatacattcctataagtcggtacaatttgttgagagccatttgctggataatgaagatatctcattaacagtgatttttttatgagtacagtattagataacctgttttgattttcagttaaaaatgtcaaaagttacccgaagcagataatattctatacaattgtgcaat
gi|1 : agtgtgagcttttagtaactagggacgtgcgatttcccgaactaatagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaatgggacgtgcatagacggcaacagatagaagagcgatttgactcccgaacgaaaaatttgtaacaaaaaccagtatggagcccaggaccagaggtgaatttcaaccatatctattcaaaaattggtaagaaaattcgtttgataataattggcaggttattatagcggtctcagagactcaaaattacatatccctagtaaagtaataatactactaatagatcccgacaatgtgttatgtatgtagccatgataaaaatgttagaattattatagtaacagaggatcagtggtaccaaccatcaagatgtgttgagcgattgatccatgttatgttgtttttcagacttctttcaattagagttattccccgtcgtgaaagagaaagtagattaccccggcatttattgtttacaaacaagctgctcggatattgcaaggaaactgatctgtaatgtatgttagagcaagttttgagatataattagtgaattaattgtgcaagttcataaacacacaggtgatatataatgaatgacaaaaaatgtcttcgttgagctatcttgtgCATGCATTTTTTTCTTTT--ACAAACATACACAAATAACATTTAAAATA-T-TTAATCCATAGAT-GAAGGCCAGAA------GGGTGT--GGTACTTCCAGTTTTGAAGTT-ATGGA-TCATGAGGAGATTGTACCAGC-TAC-AT-GCAAAGGCTTTGGATGGACAGAGCGTTGGAAAATTG-TGGAACTTGTTGTCTTGTCAAAGGG---ATTATGAGTCTG--CC-AGAAGTGTGGTCTCCCT--CTTCAGTTCA-TGCATGCAACCACAATTCAAAC---ATAGT-CTTTCT-GCCTTTTAAAGGTT-TTTTTT-TTTGTTTATAT-ACATTCC-TATA-AGTCGG-TACAATTTGTTGAGA--GCCATTTGCTGGATA-ATGAAGATATCTCA-TTAAC--AGT--GATTTTTTTATGAGTACAGTATT-AGATAACCTGTTTTGATTTTC--AGTTAAAA---------ATGTC-AAAAGTTA--CCCGAAgtatcagtaaattaacaaatcttgagctaattgcatgcatttttttcttttacaaacatacacaaataacatttaaaatatttaatccatagatgaaggccagaagggtgtggtacttccagttttgaagttatggatcatgaggagattgtaccagctacatgcaaaggctttggatggacagagcgttggaaaattgtggaacttgttgtcttgtcaaagggattatgagtctgccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaaacatagtctttctgccttttaaaggtttttttttttgtttatatacattcctataagtcggtacaatttgttgagagccatttgctggataatgaagatatctcattaacagtgatttttttatgagtacagtattagataacctgttttgattttcagttaaaaatgtcaaaagttacccgaagcagataatattctatacaattgtgcaat
gi|10 : agtgtgagcttttagtaactagggacgtgcgatttcccgaactaatagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaatgggacgtgcatagacggcaacagatagaagagcgatttgactcccgaacgaaaaatttgtaacaaaaaccagtatggagcccaggaccagaggtgaatttcaaccatatctattcaaaaattggtaagaaaattcgtttgataataattggcaggttattatagcggtctcagagactcaaaattacatatccctagtaaagtaataatactactaatagatcccgacaatgtgttatgtatgtagccatgataaaaatgttagaattattatagtaacagaggatcagtggtaccaaccatcaagatgtgttgagcgattgatccatgttatgttgtttttcagacttctttcaattagagttattccccgtcgtgaaagagaaagtagattaccccggcatttattgtttacaaacaagctgctcggatattgcaaggaaactgatctgtaatgtatgttagagcaagttttgagatataattagtgaattaattgtgcaagttcataaacacacaggtgatatataatgaatgacaaaaaatgtcttcgttgagctatcttgtgcccccccccccccttcaaatgtgggaggcactagtggtcatctcatacacttgtatgttcagtcccagataggaataggaaaagaaatatgtctttaggattgaatgaatttaattcataatactaattcaaattgtgtagaatacttcaaacaaaacaagtcaatactgcatgggttacaaccatatggaaccatggcaagcagtcttagatttttattttttttaaattcattactgataattgtacatgtacatacatgtatgaaaaaagatgaccagttatgatatcagtatcagtaaattaacaaatcttgagctaattgTA-G--T-A-CTAGG---G-A----CGT-GCGA---TTT-CCCGAACT-AA-----------A--AAAA--NNNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNNN---NNN-----------N------GAC---AGAAA-T-------G---GG-A--GTG---CCA------A-A--TGG-CAAG-AAAAG-ATTGAA--GA------GC-G-AT-TTTGCCT-CCACGCAA---CG--AAA-A--TTT---GT-AC--AAACA--A-C-AG--TT------G---AG----CCC-AG--A---C-CAG--AG-G-T-GA-AT-----ATC----------GACGC--AT-----ATA-T--T-T--AAAAATT-GGT-AAGAAAA-GT--TTTTGAT-AC-ATC-GACAGGATTATATTATAG-CGGTCT--C---A----A-GA-CTCATAATTACATATC-C-----CTAGTTAA--AGTAG---------TACATTAGAT-CC---ACAAATATGT-GTA-AG-AGTATGCTT-AGCTATgcagataatattctatacaattgtgcaat
gi|11 : gttgtaTTTTTCATGAGTACAGTA-TTAGATAACCTGTTTTGATTTTC--AGTTAAAA---------ATGTC-AAAAGTTA--CCTGAA
gi|12 : TGCG-AGCTTTTA-G--T-AACTAGG---G-A----CCT-GTGA---TTT-CCCACACT-AACAGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNNN---NNN-----------N------GAC---AGAAAAT-------G---GG-A-CGTG---CAA------AGA--TGG-CATG-A---G-ATT-----GA---AGAGC-G-AT-TT-GCCT-CC-CGCAAA--CG--AAA-A-ATTT---GT-AC--AAAAA--C-T-AG---TA--TG-G---AG----CCC-gcagataatattctatacaattgtgcaatacagtacggctagtaccagcatggggcatatttgttcttcaagtattgttttcatttcacaggcagcaggatacatcattcttcatatgaaagtagggaagtaacttcatatatatgcatctggatgtggtttagaagagtctcatgatatagacaaaataccagcaccattgaattatggaacctctcaatgcagcattagaa
gi|13 : atgag---ATGTCTT----TAG-AACTGAAT--GAATTTG-ATTCA-CAATAC-TATTC-AAATTGTG-TAG-AATACTTCAA-A-CA-AAA-ACAA-ACCAGTA-CTGC-----A-TGGGT-CACAACC--ATGGAACCATGGCATGCAGTGaagac
gi|14 : tGTTTAAATTTTTAATTTTTTTTTTTTTTTTTTTTTAAATCTCTATTACAGAGAG---GTAC-ATGTACA-TGCAGGT--TGAAGAA------ATCAATGATGATATCATcagtgcaaaactggtagacaaatcaaattaatatt
gi|15 : tgacaagcgcagaatgatgacatattttagtgaaattcGATAACCTGTTTTGGTTTTCCAAG-TGAAAAAACAAAAGATGTCAAAAAGTTAACCCCGAA
gi|16 : G---AAG-TCTCTTC-TTTCGATA--A-TAG-AGTTAA--TCCCCGTT---ATTCCCCGTTGTGgcaaataatattgt
gi|2 : tTGTG-AGCTTTTA-G--T-AACTAGG---G-A----CGT-GCGA---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNNN---NNN-----------N------GAC---AGAAAAT-------G---GG-A-CGCG---CAA------AGA--CGA-CAAG-A---G-ATTGAACAGATTGAGAGC-G-AT-TT-GCCT-CC-CGCAAA--CG--AAC-A-ATT----GT-AC--AAAAAA-C-CGAG--TTA--TGCG---GG----CCC-AG--A---CACAG--AG-G-T-GA-AT-----ATCG---------GAC-T--AT-----CTG-T--T-AGAAAAAATC-GGT-AAGAAA--GTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TCATA--CGGTCTATCTCAG----G-GA-CTCAAAAT-AC-TATC-C-----CTAG-TAA--AGTAG----------A-A-TAGAT-CCC-GACA---ATGT-GCAGAA-TGTATG--T-AGCCATCAT-AAAAC-TGTTGTGGTAGAA-TTCTATATAGTACACAAGGAATCA-GTGGTATCAAC-CA-TCAAGATGTG-TGG---GAG-CGA-TTGGATCCATTGTTA--TATGTTT---TTGTG---AAG-TCTCTTC-TTTCGAT---C-TAG-CATTAATTTCCCCG-T---ATTCCCCGTTTTGAAATGAAAAAGTAGAC------------------------ACAAGATTGCTCG--------AAGGA----A----AC--TTATC---GT-A--A-TGT-ATGTTGGAGAGC-AAGTT----ACGATATA-TTTAGT---G--AA-TA----A----TTGGG-CAAG---TTGA-T--AAACACAACAG-TG--ATATAAT-------GAGATTTA-------AATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGCTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCACCCCCCCCCCCCTCAAATGTGG-GAGGC-A-TAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-G-AAAGGAAATG---ATGTCTT----TAG-GACGGAAT--GAATTTGGATTCAGTAATACCTAATT-AAATTGTGCTAGCAATACTTCAA-A-CA-AAACACAAGGTCAATA-CTG------A-TAAG--CACAACCATATG-AACCATGGCATGCAGTGTTCAGATTTGT----TTTTTTTTTTTTTTTTTCTAAATTTC-ATTACTTGTAA-TTGTAC-ATGTACATTACAGGTACTGAAAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAA-GCCA-AA------GGGTGTCGAGTACTTCCATTTATGAAGTTTGTGGAACCA-GAGGAAG--GTACCAGC-TAC-AT-GTGAAGGCTTGAGCGGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTT-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGT-GTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTG-TTATATAACATCCTTTATA-AGTCGGTTACAA-TTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTAT-AGTACAGTA-T-AGA-AACCTGTTTTGGTTTTC--AG-TGAAA---------ATG-C-AAATATTA--CCCGAA
gi|3 : GTGTAGCTTTTA-G--T-ACTTAGG---G-A-----GT-GCGA---TTTTCCCGAACT-AACAGACGT---CAACGAAA--ATCA-TTCGGCCG---A-A----CCTCGG---CGTGGTAC-CGGAAC-C-TTTAC-------ACAAT-----C--GCCGA---------GG--GTGTGCC---GAA-----------GT-----GAC---AG-AAAT-------G---GG-A-CGTG---CCA------AGA--CGA-CAAG-----G-ATTGAA--G----AGGGC-G-AT-TT-GCCTGCC-CG-AAA--CGGTAAACA-ATTT---GT-AC----AAA--CGC-AG---TA--TG-G---AGGTCTCCA-GG--A---T-CAG--AG-G-T-GAGAT-----ATTGA--------GAC-CA-AT-----CTG-T--T-CA-AAAAATT-GGT-AAAGAAA-ATAGTTTGAATATA-ATC-GGC-GG-TTA--TTATAG-CGG--T--CTCAG----ATAA-CTCAAAAAT-CACATC-C-----CTAG-TAA--AGTA----------TA-A-TAGATCCCC-GACA---A-GT-GT--AA-TGTATG--T-AG-CATGAT-AAAA--TCGTGT--TAGAA-TTCT-TATAGTA-AC-AGGAATCA-GTGGTATCAACGCA-TCAAGATGTG-TTG---AGGCCGA-TT-GATCCAA-GTTA----TGTTG---TTGAGTCTAAA-T-TCTTT-TTTCGAT-----TAGACGTT-ATCTCCGCG-T---ATTCCCGTTTGTGAAAT--GAAAGTAGAC------------------------ACAAG-CTGCTCG--------GAGA--------------TGATC--TGTAA--A-TGT-ATGTTG--GAGC-AAGTTTTTGA-GATATATTTTAGTGTGG--AATTA----A----TTGTG-CAAG---TTGA-TA-AAACACA-CAGGTG--ATATTAT-------GAAGTTTA------T-ATGAA-AACAAT-TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCC----CCCCCTTC
gi|3 : aatgaCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACAACTGTA-TGTTTAGTCC-AGATAGGAAATAAGGAAAGGAAAT-----TGTCTT----TAG-GA-TGAAT--GA-TTTGA--TCA-TAATACT--ATT-AAATTGTG-T-G-AATACTTCAACA-CATAAA-ACAAG-TCAATA-CTGCCATATA-TAGGTACA-AACCATATGGAACTATGGCATGC-GTGTT-AGATTT-------------------TTTTAAAAAATTC-ATTACTGGTAAATTGTACCATGTACAT-ACAGGTA----GAAAAAGATTACCAGTTATGA-ATCATGCATTTTTTC--TTTTAACAAATATACACAAT-AACATTTAACATA-T-TTAATCCATAGATTGAAGGCCA-GATCGAAGGGGTGT--GGTACTTCAAGTTTTGAAGTT-GTGGGACCATGAGGAGATTGTACCAGCCTACCATCGTGAAGGCTTTGGATGAACAGATAGTTGGAGAATTCGTGGAACTTGTT-TTCTGTC-C-GAGGGTA-TGT-GGGGTCTGGCCAGAAGTGTGGTCTCCCT--CTTCAGTTCA-TGCATGCAACCACAATTCAA--CATACAGTCCTTTCTGTCAATTTAAAGGTATTTTTTATTTTGTTTATAT-ACATCCC-TATATAGTCG--TACAATTTGTTGCAAGAGCCATTTGCTGG--ATAAAAAGATATCTCA-TTGACCAAGTGGT-TTTTTTTATGAGTAaaatgtgggaggcactagtggtcatctcatacaactgtatgtttagtccagataggaaataaggaaaggaaattgtctttaggatgaatgatttgatcataatactattaaattgtgtgaatacttcaacacataaaacaagtcaatactgccatatataggtacaaaccatatggaactatggcatgcgtgttagatttttttaaaaaattcattactggtaaattgtaccatgtacatacaggtagaaaaagattaccagttatgaatcatgcattttttcttttaacaaatatacacaataacatttaacatatttaatccatagattgaaggccagatcgaaggggtgtggtacttcaagttttgaagttgtgggaccatgaggagattgtaccagcctaccatcgtgaaggctttggatgaacagatagttggagaattcgtggaacttgttttctgtccgagggtatgtggggtctggccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaacatacagtcctttctgtcaatttaaaggtattttttattttgtttatatacatccctatatagtcgtacaatttgttgcaagagccatttgctggataaaaagatatctcattgaccaagtggttttttttatgagta
gi|4 : aatgagtgtagcttttagtacttagggagtgcgattttcccgaactaacagacgtcaacgaaaatcattcggccgaacctcggcgtggtaccggaacctttacacaatcgccgagggtgtgccgaagtgacagaaatgggacgtgccaagacgacaaggattgaagagggcgatttgcctgcccgaaacggtaaacaatttgtacaaacgcagtatggaggtctccaggatcagaggtgagatattgagaccaatctgttcaaaaaattggtaaagaaaatagtttgaatataatcggcggttattatagcggtctcagataactcaaaaatcacatccctagtaaagtataatagatccccgacaagtgtaatgtatgtagcatgataaaatcgtgttagaattcttatagtaacaggaatcagtggtatcaacgcatcaagatgtgttgaggccgattgatccaagttatgttgttgagtctaaattcttttttcgattagacgttatctccgcgtattcccgtttgtgaaatgaaagtagacacaagctgctcggagatgatctgtaaatgtatgttggagcaagtttttgagatatattttagtgtggaattaattgtgcaagttgataaaacacacaggtgatattatgaagtttatatgaaaacaattttcttcgttgagctatcttggtgcT--CTCAG----G-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG----------A-A-TAGAT-CCC-GACA---ATGT-GCAGAA-TGTATG--T-AGCCATCAT-AAAAC-TGTTGTGGTAGAA-TTCTATATAGTACACAAGGAATCA-GTGGTATCAAC-CA-TCAAGATGTG-TGG---GAG-CGA-TTGGATCCATTGTTA--TATGTTT---TTGTG---AAG-TCTCTTC-TTTCGAT---C-TAG-CATTAATTTCCCCG-T---ATTCCCCGTTTTGAAATGAAAAAGTAGAC------------------------ACAAGATTGCTCG--------AAGGA----A----AC--TTATC---GT-A--A-TGT-ATGTTGGAGAGC-AAGTT----ACGATATA-TTTAGT---G--AA-TA----A----TTGGG-CAAG---TTGA-T--AAACACAACAG-TG--ATATAAT-------GAGATTTA-------AATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGCTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCACCCCCCCCCCCCTCAAATGTGG-GAGGC-A-TAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-G-AAAGGAAATG---ATGTCTT----TAG-GACGGAAT--GAATTTGGATTCAGTAATACCTAATT-AAATTGTGCTAGCAATACTTCAA-A-CA-AAACACAAGGTCAATA-CTG------A-TAAG--CACAACCATATG-AACCATGGCATGCAGTGTTCAGATTTGT----TTTTTTTTTTTTTTTTTCTAAATTTC-ATTACTTGTAA-TTGTAC-ATGTACATTACAGGTACTGAAAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAA-GCCA-AA------GGGTGTCGAGTACTTCCATTTATGAAGTTTGTGGAACCA-GAGGAAG--GTACCAGC-TAC-AT-GTGAAGGCTTGAGCGGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTT-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGT-GTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTG-TTATATAACATCCTTTATA-AGTCGGTTACAA-TTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTAT-AGTACAGTA-T-AGA-AACCTGTTTTGGTTTTC--AG-TGAAA---------ATG-C-AAATATTA--CCCGAA
gi|5 : TG-AGCTTTTA-G--T-AACTAGG---GCG----CGT-GC-A---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNNN---NNN-----------NNNNNNNGAC---AGAAAAT-------G---GG-AACGTG---CAAGAGTCAAGA--CGG-CAA--A---G-ACGGA----------------------GCCT-CCGCGCAAA--CG--AAA-C-TTTT---GTCAC--AAAAA--T-C-AGCGTAA--TG-G---AG----CCA-GG--A---C-CAG--AG-GGT-GG-AT-----GTGGTGTCATAGTGAA-C--ATT----CTA-T--T-C--AAAGATT-GGTTAAGAAAA-GTTGTTT-GATAAT-ATCTGGCAGG-TTAT---ATAG-CGGTC-----AAG----A-GA-CTAAAAAT-ACA-ATC-C-----CTAG-TAA----------------TG-A-T---C-CCC-GACA---ATGT-GTA-AA-TGTATG-----ACCATAAT-AAAAATTGTTTTT-GAACA-TTCT--------------GAATTAGGTGGTA-TAAC-CA-TCAAGATGTG-TTG---AAG-CAA-TTG--TTC-----------TGACT---TCAAG---AAGTTCTCATC-TTTCGAG---CTTAG-TGCTTATTCTCCCG-TGTAATTT----TTGTAA---------------------------------------ACAAAACTGCTCG----------GGG----ATTGCACAAGGATC--TGT-A--ATTGT-ATGTTG--GAGC-AG--TTTTGA-GATATATTTTAGT---G--AA-TATGTCAATGTTTGTG-C-AG---TTGATT--TACCACA-CAGGTG--ATATAATCATCAACTAGATTGAATTCACTAATGAC--ACAAATTT--TCTTACCGTTTGAGCTATCTTTGTGCCCCCCCCCC-CCCCCTTC
gi|5 : attaaggtttgtactggtgtCCCCCCCCCCCCCCCTTCAAATGTGGCGAAGCAACT-GTTTGGTCATCTCATACACTTGTAC-GTTCAGTGCCAGATAGGAA-TA-GGAA--GAAACAAGTATGTCCTTTAATAGAAACTGAATAGAAATTTGTGTTCA-TAATACTAAATC-AAATTGTG--AG-AATACTTCAA-ACCA-AAA-ACAA-GTCAATACCTGC-----ACTGGGT-CAC-ACCATaaatgtggcgaagcaactgtttggtcatctcatacacttgtacgttcagtgccagataggaataggaagaaacaagtatgtcctttaatagaaactgaatagaaatttgtgttcataatactaaatcaaattgtgagaatacttcaaaccaaaaacaagtcaatacctgcactgggtcacaccatggattgctagtgcaagtgcaaaactggtagacaaatcaaattttattgct
gi|6 : attaaggtttgtactggtgttgagcttttagtaactagggcgcgtgcatttcccgaactaacagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaaatgggaacgtgcaagagtcaagacggcaaagacggagcctccgcgcaaacgaaacttttgtcacaaaaatcagcgtaatggagccaggaccagagggtggatgtggtgtcatagtgaacattctattcaaagattggttaagaaaagttgtttgataatatctggcaggttatatagcggtcaagagactaaaaatacaatccctagtaatgatccccgacaatgtgtaaatgtatgaccataataaaaattgtttttgaacattctgaattaggtggtataaccatcaagatgtgttgaagcaattgttctgacttcaagaagttctcatctttcgagcttagtgcttattctcccgtgtaatttttgtaaacaaaactgctcggggattgcacaaggatctgtaattgtatgttggagcagttttgagatatattttagtgaatatgtcaatgtttgtgcagttgatttaccacacaggtgatataatcatcaactagattgaattcactaatgacacaaattttcttaccgtttgagctatctttgtg-AGCTTTTAAG--T-AACTAGG---G-AGCGGCGTTGCGAATGTTT-C--------AACCGACAC---TAT-AAAA--ATCACTTCGGGCGCGCACA----CCTCGG---C-TGATAC--GGAAC-CATATAGG------ACAATT----C--ATCGACCTTCGATGGGT-GTGTGCC---GAGT----------G------GAC---AGAAAAT-------GTCGGG-A-CATG---CAA------AGA--CGG-CAAG-A---G-ATTGAA---A---GGAGC-GCAT-TT-GCCT-CCGCGCAAAGACG--AAC-A-ATTT---GTGACCAAAAAA--C-C-AG--T-G--TG-GGGAAG----CCTAGG--ATTTC-CAAGAAG-G-T-GA-AT-----ATTG---------G-C-C--ATAAT--CTG-T--TTC--AAAAATTTGGC-AAGAAAAAGTCGTGTTGATAAT-ATC-GGCAGG-TTAT-CTATAGACGGT-T--CTCAG----A-GACCTCAAAATTACATATTGC-----CTAG-TAAGTAGTAAGCGAT----TA-A-TAGATCCCC-GACA---ATGT-GTA-AATTGTATG--TAAGCCATGAT-AAAA---AATGTG-TAGAATTTCT-TATAGTA-ACAAG--ATC--GTGGTAGCAAC-CA-TCAAGAT-TG-TTGTTTGAG-CGACTTTGATCCAT-GTTA----TGTTTGTGTTCA----AAG-TCTCTTC-TTTCGA------TAG-AGTT-AT-------------TTCCCCGTTGTGAAATTTGAAAGTAGAC------------------------ACAAG-CTGCTCG--------GAAGATTGCA----AC--TTATCTATGT-ATTA-TGTAATGTTTGTGAGCGAAGTTTTGAG-GATATA-GTTAGT---GTAAA-TA----A----TTGTGACAAAGTTTTGA-CTAAAACACA-CAGGTG--ATATAAT-------GA-ATTTAT-----TAATGAA-AACAA--TTTGTCTT--CG-TTggattgctagtgcaagtgcaaaactggtagacaaatcaaattttattgct
gi|7 : GTG-AGCTTTTA-AGTT-AACTAGG---G------TGT-GCGA---TTT-CCCGAACT-AA-----------------A--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNNN---NNN-----------G-------AC---AGAAA-T-------G---GG-A-CGTG---CCA------AGA--CGG-CAAG-A---G-ATTGAA--G-------GC-G-AT-TT-GCCT-CC-CGCAAA--CG--AAA-A-ATTT---GT-AC--ACAAA--C-C-AG--T-A--TG-G---AG----CCA-GG--A---C-CAG--AG-G-T-GA-AT-----ATCG---------A---C--ATA----TTA-T--T-C--AAAAATT-GGT-AAGAAAA-GTCGTTT-GATAAT-ATT-GGCAGG-TTAT-TTA--G-CGGTCT--C--AC----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCCCGACA---ATGT-G----A-TGTATG--T-AGCCATGATAAAAA--TGTTGT--TAGTA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TT----GAG-CGA-TT-GATCCAT-G-----T-TGTTT---TTCAG---A------CTTC-TTTCGAT-----TAG-AGTTA----------------TTCCCGTTGTGAAA-GAGAAAGTAGA
gi|8 : TG-AGCTTTTA----T-AAC---A---G-A----C-T--CGA---TTT-CC-GAACT-AATTGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNN-------------------------GAC---A-AAAAT-------G---GA-G-CG-------G------AGA----G-CAAGGA---G-ATTGAA--GA------GCAG-AT-TT-GCT---C-CGCAAA--CG--AAA----TTT---GT-AC--AAAAA--C-C-AG--T-A--TG-G---AG----CCA-GG--A---C-CAG--TGTG-T-----T-----ATCG----------ACAT--AT-----TCAGT--T-C--AAACATT-G-T-CAGAA---GTCGTT---GTAAT-ATT-GGC--G-TTAT-TACTA--CG---T--CTCAGGAGGA-GA-CTCAAAATTACATACC-CTATACCTAG-TAA--AGT-G---------TA-A-TAGAT-CCC-G-CA---ATGTTGTA-AA-TGTATG--T-G--CATGAT-AAAA--TGTTGT--TAGAA-TTTT-TAGAA-----AAGGAATCA-GTGGTACCAAC-CAGTCAAGATGTGTTTT---AAG-C---TTGGATCC----TTG--T-TGTTT---TTCAG---A------CTTCTTTTCGATTAAC-TAG--GTTA--TTCCC
gi|9 : gtatgagtgtTTA-G--TCAACTAGGCGGA-A----CGTTGCAACC-TTT-CCCGAACTTAATAGACGTAAACA--GAAATCATC--TTCA-CCG---A-ATCACCCTCGGGCCCATGATACACAGACCAC-TATACGTCAGGCAGAATGATTCCTGGCCGA---------AGTAGT-TGCCTCCGAGTATGGATCATTG------GATGCGAGAAAATAAGCAGAG---GGCA-CGTAGCACAA------AGAATCGGTC--G-A---GTATTGAA---A---CGAGCCG-ATGTT-GCT---C-CG-AAA--CG--AAA-AGATTTATTGT-AC--AAAAATTC-C-GA--GTACTTG-G---AT----CCC-AGCGA---C-CAG--AG-G-TTGACATTAAGAATCG----------AC-C--ATATATTCTA-TCTT-C--AAAAATT-GGT-AA
Alignments
lowQualScore : 111 1111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777 1111111 111111 2222222222 1 1 2222222 11111 444444444444444444444444 11 11111 11111 33333333333 11 1 11 22 1 1 1111 1 22222222222 11111 22222 333333333333333 111 666666666666666666666666 1 3333333333333333333333 111 111 111111 1 111 1 111111111 111 1111 1 3333333333333333333333 11 111 1 11 11 1 2222 1111 1 11111 1 11 222222 11 1 1 33333333333 11 11 11 11 1 222 1 1 1 222222 11 1 1 11 1 1 1 22 1 111 11111 1 11 1 1 11 1 1 1 1 1 1 1 1 1 11 1 11 1111 1 11 2222 1 111 1 11 2 333333333 1 11
lowQualScore : 5 6666 4 777 999999 8 222 4 4 55 777 99 55 66 22 5555555555 99999 66 0 77777777777777777777777777777777777777777777777777777777777777777777777777777 777 0 0 3333333 777 4 4 777 0 111111 55 4 4 777 4 9999999999 8 4 4 4 44 2 5 55 55 7777 777 2 55 99 4 4 4444444 4 777 8888 99 66 777 4 66 4 4 4 8 11111 888888888888888888888888 4 66 4 00 4 4 55 1 9 5 5 3 5 88 77 44444 4 9999 4 4 1 4 11111 4 66 22222222222 4 4 8 4 777 4 33 4 7777 0 66 55 5 0 0 0 0 5 5 5 5 5 4444 5 5 1 88888888888 888 1 777 44444 4 88888 99 222222222222222 444 444444444444444444444444 5 3333333333333333333333 99 1 666 6 99 6 6 666 6 3 777777 3 111 99 3 999999999 6 111 6666 3 6 99 8888888888888888888888 6 55 99 99 6 5 555 1 8 8 0 0 11 00 8 8 0 0 4444 4444 6 1 99 99 3 77 6 55555 6 6 6 3 66 6 333333 6 44 0 0 3 0 00000000000 1 1 6 8 88 8 11 55 5 0 0 0 33 33 0 111 0 5 0 888888 77 1 1 5 3 5 88 0 0 0 2 1 22 33 0 666 88888 0 33 0 5 88 5 3 2 0 0 0 0 5 5 5 0 11 5 22 4444 5 33 0000 0 111 0 11 0 222222222 0 8 1 11
lowQualScore : . .... . ... ...... . ... . . .. ... .. .. .. .. .......... ..... .. . ............................................................................. ... . . ....... ... . . ... . ...... .. . . ... . .......... . . . . .. . . .. .. .... ... . .. .. . . ....... . ... .... .. .. ... . .. . . . . ..... ........................ . .. . .. . . .. . . . . . . .. .. ..... . .... . . . . ..... . .. ........... . . . . ... . .. . .... . .. .. . . . . . . . . . . .... . . . ........... ... . ... ..... . ..... .. ............... ... ........................ . ...................... .. . ... . .. . . ... . . ...... . ... .. . ......... . ... .... . . .. ...................... . .. .. .. . . ... . . . . . .. .. . . . . .... .... . . .. .. . .. . ..... . . . . .. . ...... . .. . . . . ........... . . . . .. . .. .. . . . . .. .. . ... . . . ...... .. . . . . . .. . . . . . .. .. . ... ..... . .. . . .. . . . . . . . . . . . .. . .. .... . .. .... . ... . .. . ......... . . . ..
lowQualScore : 0 1111 0 000 999999 0 555 0 0 66 000 55 55 99 99 5555555555 00000 77 4 99999999999999999999999999999999999999999999999999999999999999999999999999999 000 8 8 0000000 000 0 0 000 6 555555 55 0 0 000 0 8888888888 0 0 0 0 88 0 0 55 55 2222 000 0 55 55 0 0 8888888 0 000 5555 66 11 888 4 11 4 4 4 9 11111 222222222222222222222222 4 11 4 66 4 4 11 4 2 0 0 2 0 22 55 44444 6 4444 4 4 9 4 11111 4 11 77777777777 4 4 9 4 888 4 44 4 0000 0 99 00 0 0 1 0 1 0 4 0 0 0 4444 0 0 9 99999999999 888 0 888 88888 4 99999 88 333333333333333 333 222222222222222222222222 5 7777777777777777777777 22 0 555 7 22 7 7 777 7 2 222222 3 777 22 3 333333333 7 777 0000 3 7 22 8888888888888888888888 7 88 22 22 7 0 444 0 0 0 0 8 00 88 0 0 0 8 9999 2222 7 0 22 55 3 22 7 00000 7 7 7 3 00 7 333333 7 00 0 8 2 8 66666666666 0 4 0 0 88 0 44 88 6 8 6 8 88 88 0 555 0 0 0 888888 55 0 0 5 2 5 55 0 0 0 0 0 00 88 0 000 55555 0 88 0 0 00 0 2 5 0 0 0 0 5 5 5 0 88 5 55 8888 0 88 8888 0 000 6 00 4 000000000 6 0 4 00
consensus : TGTG-AGCTTTTA-G--T-AACTAGG---G-A----CGT-GCGA---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ATCA-TTCGGCCG---A-A----CCTCGG---CGTGATAC-CGGAAC-C-TNTAC-------ACAAT-----C--GCCGA---------GG--GTGTGCC---GAG-----------G------GAC---AGAAAAT-------G---GG-A-CGTG---CAA------AGA--CGG-CAAG-A---G-ATTGAA--GA---AGAGC-G-AT-TT-GCCT-CC-CGCAAA--CG--AAA-A-ATTT---GT-AC--AAAAA--C-C-AG--TTA--TG-G---AG----CCC-GG--A---C-CAG--AG-G-T-GA-AT-----ATCG---------GAC-C--AT-----CTA-T--T-C--AAAAATT-GGT-AAGAAAA-GTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TTATAG-CGGTCT--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCC-GACA---ATGT-GTA-AA-TGTATG--T-AGCCATGAT-AAAA--TGTTGTG-TAGAA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TTG---GAG-CGA-TTGGATCCAT-GTTA--T-TGTTT---TTNAG---AAG-TCTCTTC-TTTCGAT---C-TAG-NGTTAATTTCCCCG-T---ATTCCCCGTTGTGAAATGAGAAAGTAGAC------------------------ACAAGACTGCTCG--------AAGGA----A----AC--TNATC--TGT-A--A-TGT-ATGTTGGAGAGC-AAGTTTTTGA-GATATA-TTTAGT---G--AA-TA----A----TTGTG-CAAG---TTGA-T--AAACACA-CAGGTG--ATATAAT-------GAGATTTA------TAATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCNCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-GGAAAGGAAATG---ATGTCTT----TAG-GACTGAAT--GAATTTGGATTCA-TAATACCTAATT-AAATTGTG-TAG-AATACTTCAA-A-CA-AAA-ACAAGGTCAATA-CTGC-----A-TGGGT-CACAACCATATGGAACCATGGCATGCAGTGTTCAGATTTGT----TTTTTTTTTTTTTTTTTCTAAATTTC-ATTACTGGTAA-TTGTAC-ATGTACATTACAGGTACTGAAAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAAGGCCA-AA------GGGTGTCGGGTACTTCCANTTNTGAAGTTTGTGGAACCATGAGGAGGTTGTACCAGC-TAC-AT-GCGAAGGCTTNGGNNGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTC-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGTGGTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTGTTTATATAACATCCCTTATA-AGTCGGTTACAATTTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTATGAGTACAGTA-T-AGATAACCTGTTTTGGTTTTC--AGTTGAAA---------ATGTC-AAAAGTTA--CCCGAA
Reference ( family-1438 ) : TGTG-AGCTTTTA-G--T-AACTAGG---G-A----CGT-GCGA---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ATCA-TTCGGCCG---A-A----CCTCGG---CGTGATAC-CGGAAC-C-TNTAC-------ACAAT-----C--GCCGA---------GG--GTGTGCC---GAG-----------G------GAC---AGAAAAT-------G---GG-A-CGTG---CAA------AGA--CGG-CAAG-A---G-ATTGAA--GA---AGAGC-G-AT-TT-GCCT-CC-CGCAAA--CG--AAA-A-ATTT---GT-AC--AAAAA--C-C-AG--TTA--TG-G---AG----CCC-GG--A---C-CAG--AG-G-T-GA-AT-----ATCG---------GAC-C--AT-----CTA-T--T-C--AAAAATT-GGT-AAGAAAA-GTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TTATAG-CGGTCT--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCC-GACA---ATGT-GTA-AA-TGTATG--T-AGCCATGAT-AAAA--TGTTGTG-TAGAA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TTG---GAG-CGA-TTGGATCCAT-GTTA--T-TGTTT---TTNAG---AAG-TCTCTTC-TTTCGAT---C-TAG-NGTTAATTTCCCCG-T---ATTCCCCGTTGTGAAATGAGAAAGTAGAC------------------------ACAAGACTGCTCG--------AAGGA----A----AC--TNATC--TGT-A--A-TGT-ATGTTGGAGAGC-AAGTTTTTGA-GATATA-TTTAGT---G--AA-TA----A----TTGTG-CAAG---TTGA-T--AAACACA-CAGGTG--ATATAAT-------GAGATTTA------TAATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCNCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-GGAAAGGAAATG---ATGTCTT----TAG-GACTGAAT--GAATTTGGATTCA-TAATACCTAATT-AAATTGTG-TAG-AATACTTCAA-A-CA-AAA-ACAAGGTCAATA-CTGC-----A-TGGGT-CACAACCATATGGAACCATGGCATGCAGTGTTCAGATTTGT----TTTTTTTTTTTTTTTTTCTAAATTTC-ATTACTGGTAA-TTGTAC-ATGTACATTACAGGTACTGAAAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAAGGCCA-AA------GGGTGTCGGGTACTTCCANTTNTGAAGTTTGTGGAACCATGAGGAGGTTGTACCAGC-TAC-AT-GCGAAGGCTTNGGNNGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTC-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGTGGTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTGTTTATATAACATCCCTTATA-AGTCGGTTACAATTTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTATGAGTACAGTA-T-AGATAACCTGTTTTGGTTTTC--AGTTGAAA---------ATGTC-AAAAGTTA--CCCGAA
gi|1 : TGTG-AGCTTTTA-G--T-AACTAGG---G-A----CGT-GCGA---TTT-CCCGAACT-AATAGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNNN---NNN-----------N------GAC---AG-AAAT-------G---GG-A-CGTG---CAT------AGA--CGG-CAAC-A---G-AT---A--GA---AGAGC-G-AT-TT-GACT-CC-CG--AA--CG--AAA-A-ATTT---GTAAC--AAAAA--C-C-AG---TA--TG-G---AG----CCCAGG--A---C-CAG--AG-G-T-GA-AT-----TTC----------AAC-CATAT-----CTA-T--T-C--AAAAATT-GGT-AAGAAAA-TTCG-TTTGATAATAATT-GGCAGG-TTA--TTATAG-CGG--T--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAATAATACTACTA-A-TAGAT-CCC-GACA---ATGT-GT--TA-TGTATG--T-AGCCATGATAAAAA--TGT-----TAGAA-TTAT-TATAGTA-ACAGAGGATCA-GTGGTACCAAC-CA-TCAAGATGTG-TT----GAG-CGA-TT-GATCCAT-GTTATGT-TGTTT---TTCAG---A------CTTC-TTTCAAT-----TAG-AGT------------T---ATTCCCCGTCGTGAAA-GAGAAAGTAGATTACCCCGGCATTTATTGTTTACAAACAAG-CTGCTCGGATATTGCAAGGA----A----AC--TGATC--TGT-A--A-TGT-ATGTT--AGAGC-AAG-TTTTGA-GATATA-ATTAGT---G--AATTA----A----TTGTG-CAAG---TTCA-T--AAACACA-CAGGTGATATATAAT-------G--------------AATGACAAAAAA--TG--TCTT--CG-TTGAGCTATCTT-GTGCCCCCCCC---CCCCCTTC
gi|1 : agCCCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTA-TGTTCAGTCCCAGATAGGAA-TA-GGAAAAGAAAT----ATGTCTT----TAG-GATTGAAT--GAATTT-AATTCA-TAATA-CTAATTCAAATTGTG-TAG-AATACTTCAA-A-C--AAA-ACAA-GTCAATA-CTGC-----A-TGGGT-TACAACCATATGGAACCATGGCAAGCAGTCTT-AGA--------------TTTTTATTTTTTTTAAA-TTC-ATTACTGATAA-TTGTAC-ATGTACA-TACATGTA-TG-AAAAAAGATGACCAGTTATGATATCAaaatgtgggaggcactagtggtcatctcatacacttgtatgttcagtcccagataggaataggaaaagaaatatgtctttaggattgaatgaatttaattcataatactaattcaaattgtgtagaatacttcaaacaaaacaagtcaatactgcatgggttacaaccatatggaaccatggcaagcagtcttagatttttattttttttaaattcattactgataattgtacatgtacatacatgtatgaaaaaagatgaccagttatgatatcagtatcagtaaattaacaaatcttgagctaattgcatgcatttttttcttttacaaacatacacaaataacatttaaaatatttaatccatagatgaaggccagaagggtgtggtacttccagttttgaagttatggatcatgaggagattgtaccagctacatgcaaaggctttggatggacagagcgttggaaaattgtggaacttgttgtcttgtcaaagggattatgagtctgccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaaacatagtctttctgccttttaaaggtttttttttttgtttatatacattcctataagtcggtacaatttgttgagagccatttgctggataatgaagatatctcattaacagtgatttttttatgagtacagtattagataacctgttttgattttcagttaaaaatgtcaaaagttacccgaagcagataatattctatacaattgtgcaat
gi|1 : agtgtgagcttttagtaactagggacgtgcgatttcccgaactaatagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaatgggacgtgcatagacggcaacagatagaagagcgatttgactcccgaacgaaaaatttgtaacaaaaaccagtatggagcccaggaccagaggtgaatttcaaccatatctattcaaaaattggtaagaaaattcgtttgataataattggcaggttattatagcggtctcagagactcaaaattacatatccctagtaaagtaataatactactaatagatcccgacaatgtgttatgtatgtagccatgataaaaatgttagaattattatagtaacagaggatcagtggtaccaaccatcaagatgtgttgagcgattgatccatgttatgttgtttttcagacttctttcaattagagttattccccgtcgtgaaagagaaagtagattaccccggcatttattgtttacaaacaagctgctcggatattgcaaggaaactgatctgtaatgtatgttagagcaagttttgagatataattagtgaattaattgtgcaagttcataaacacacaggtgatatataatgaatgacaaaaaatgtcttcgttgagctatcttgtgCATGCATTTTTTTCTTTT--ACAAACATACACAAATAACATTTAAAATA-T-TTAATCCATAGAT-GAAGGCCAGAA------GGGTGT--GGTACTTCCAGTTTTGAAGTT-ATGGA-TCATGAGGAGATTGTACCAGC-TAC-AT-GCAAAGGCTTTGGATGGACAGAGCGTTGGAAAATTG-TGGAACTTGTTGTCTTGTCAAAGGG---ATTATGAGTCTG--CC-AGAAGTGTGGTCTCCCT--CTTCAGTTCA-TGCATGCAACCACAATTCAAAC---ATAGT-CTTTCT-GCCTTTTAAAGGTT-TTTTTT-TTTGTTTATAT-ACATTCC-TATA-AGTCGG-TACAATTTGTTGAGA--GCCATTTGCTGGATA-ATGAAGATATCTCA-TTAAC--AGT--GATTTTTTTATGAGTACAGTATT-AGATAACCTGTTTTGATTTTC--AGTTAAAA---------ATGTC-AAAAGTTA--CCCGAAgtatcagtaaattaacaaatcttgagctaattgcatgcatttttttcttttacaaacatacacaaataacatttaaaatatttaatccatagatgaaggccagaagggtgtggtacttccagttttgaagttatggatcatgaggagattgtaccagctacatgcaaaggctttggatggacagagcgttggaaaattgtggaacttgttgtcttgtcaaagggattatgagtctgccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaaacatagtctttctgccttttaaaggtttttttttttgtttatatacattcctataagtcggtacaatttgttgagagccatttgctggataatgaagatatctcattaacagtgatttttttatgagtacagtattagataacctgttttgattttcagttaaaaatgtcaaaagttacccgaagcagataatattctatacaattgtgcaat
gi|10 : agtgtgagcttttagtaactagggacgtgcgatttcccgaactaatagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaatgggacgtgcatagacggcaacagatagaagagcgatttgactcccgaacgaaaaatttgtaacaaaaaccagtatggagcccaggaccagaggtgaatttcaaccatatctattcaaaaattggtaagaaaattcgtttgataataattggcaggttattatagcggtctcagagactcaaaattacatatccctagtaaagtaataatactactaatagatcccgacaatgtgttatgtatgtagccatgataaaaatgttagaattattatagtaacagaggatcagtggtaccaaccatcaagatgtgttgagcgattgatccatgttatgttgtttttcagacttctttcaattagagttattccccgtcgtgaaagagaaagtagattaccccggcatttattgtttacaaacaagctgctcggatattgcaaggaaactgatctgtaatgtatgttagagcaagttttgagatataattagtgaattaattgtgcaagttcataaacacacaggtgatatataatgaatgacaaaaaatgtcttcgttgagctatcttgtgcccccccccccccttcaaatgtgggaggcactagtggtcatctcatacacttgtatgttcagtcccagataggaataggaaaagaaatatgtctttaggattgaatgaatttaattcataatactaattcaaattgtgtagaatacttcaaacaaaacaagtcaatactgcatgggttacaaccatatggaaccatggcaagcagtcttagatttttattttttttaaattcattactgataattgtacatgtacatacatgtatgaaaaaagatgaccagttatgatatcagtatcagtaaattaacaaatcttgagctaattgTA-G--T-A-CTAGG---G-A----CGT-GCGA---TTT-CCCGAACT-AA-----------A--AAAA--NNNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNNN---NNN-----------N------GAC---AGAAA-T-------G---GG-A--GTG---CCA------A-A--TGG-CAAG-AAAAG-ATTGAA--GA------GC-G-AT-TTTGCCT-CCACGCAA---CG--AAA-A--TTT---GT-AC--AAACA--A-C-AG--TT------G---AG----CCC-AG--A---C-CAG--AG-G-T-GA-AT-----ATC----------GACGC--AT-----ATA-T--T-T--AAAAATT-GGT-AAGAAAA-GT--TTTTGAT-AC-ATC-GACAGGATTATATTATAG-CGGTCT--C---A----A-GA-CTCATAATTACATATC-C-----CTAGTTAA--AGTAG---------TACATTAGAT-CC---ACAAATATGT-GTA-AG-AGTATGCTT-AGCTATgcagataatattctatacaattgtgcaat
gi|11 : gttgtaTTTTTCATGAGTACAGTA-TTAGATAACCTGTTTTGATTTTC--AGTTAAAA---------ATGTC-AAAAGTTA--CCTGAA
gi|12 : TGCG-AGCTTTTA-G--T-AACTAGG---G-A----CCT-GTGA---TTT-CCCACACT-AACAGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNNN---NNN-----------N------GAC---AGAAAAT-------G---GG-A-CGTG---CAA------AGA--TGG-CATG-A---G-ATT-----GA---AGAGC-G-AT-TT-GCCT-CC-CGCAAA--CG--AAA-A-ATTT---GT-AC--AAAAA--C-T-AG---TA--TG-G---AG----CCC-gcagataatattctatacaattgtgcaatacagtacggctagtaccagcatggggcatatttgttcttcaagtattgttttcatttcacaggcagcaggatacatcattcttcatatgaaagtagggaagtaacttcatatatatgcatctggatgtggtttagaagagtctcatgatatagacaaaataccagcaccattgaattatggaacctctcaatgcagcattagaa
gi|13 : atgag---ATGTCTT----TAG-AACTGAAT--GAATTTG-ATTCA-CAATAC-TATTC-AAATTGTG-TAG-AATACTTCAA-A-CA-AAA-ACAA-ACCAGTA-CTGC-----A-TGGGT-CACAACC--ATGGAACCATGGCATGCAGTGaagac
gi|14 : tGTTTAAATTTTTAATTTTTTTTTTTTTTTTTTTTTAAATCTCTATTACAGAGAG---GTAC-ATGTACA-TGCAGGT--TGAAGAA------ATCAATGATGATATCATcagtgcaaaactggtagacaaatcaaattaatatt
gi|15 : tgacaagcgcagaatgatgacatattttagtgaaattcGATAACCTGTTTTGGTTTTCCAAG-TGAAAAAACAAAAGATGTCAAAAAGTTAACCCCGAA
gi|16 : G---AAG-TCTCTTC-TTTCGATA--A-TAG-AGTTAA--TCCCCGTT---ATTCCCCGTTGTGgcaaataatattgt
gi|2 : tTGTG-AGCTTTTA-G--T-AACTAGG---G-A----CGT-GCGA---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNNN---NNN-----------N------GAC---AGAAAAT-------G---GG-A-CGCG---CAA------AGA--CGA-CAAG-A---G-ATTGAACAGATTGAGAGC-G-AT-TT-GCCT-CC-CGCAAA--CG--AAC-A-ATT----GT-AC--AAAAAA-C-CGAG--TTA--TGCG---GG----CCC-AG--A---CACAG--AG-G-T-GA-AT-----ATCG---------GAC-T--AT-----CTG-T--T-AGAAAAAATC-GGT-AAGAAA--GTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TCATA--CGGTCTATCTCAG----G-GA-CTCAAAAT-AC-TATC-C-----CTAG-TAA--AGTAG----------A-A-TAGAT-CCC-GACA---ATGT-GCAGAA-TGTATG--T-AGCCATCAT-AAAAC-TGTTGTGGTAGAA-TTCTATATAGTACACAAGGAATCA-GTGGTATCAAC-CA-TCAAGATGTG-TGG---GAG-CGA-TTGGATCCATTGTTA--TATGTTT---TTGTG---AAG-TCTCTTC-TTTCGAT---C-TAG-CATTAATTTCCCCG-T---ATTCCCCGTTTTGAAATGAAAAAGTAGAC------------------------ACAAGATTGCTCG--------AAGGA----A----AC--TTATC---GT-A--A-TGT-ATGTTGGAGAGC-AAGTT----ACGATATA-TTTAGT---G--AA-TA----A----TTGGG-CAAG---TTGA-T--AAACACAACAG-TG--ATATAAT-------GAGATTTA-------AATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGCTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCACCCCCCCCCCCCTCAAATGTGG-GAGGC-A-TAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-G-AAAGGAAATG---ATGTCTT----TAG-GACGGAAT--GAATTTGGATTCAGTAATACCTAATT-AAATTGTGCTAGCAATACTTCAA-A-CA-AAACACAAGGTCAATA-CTG------A-TAAG--CACAACCATATG-AACCATGGCATGCAGTGTTCAGATTTGT----TTTTTTTTTTTTTTTTTCTAAATTTC-ATTACTTGTAA-TTGTAC-ATGTACATTACAGGTACTGAAAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAA-GCCA-AA------GGGTGTCGAGTACTTCCATTTATGAAGTTTGTGGAACCA-GAGGAAG--GTACCAGC-TAC-AT-GTGAAGGCTTGAGCGGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTT-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGT-GTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTG-TTATATAACATCCTTTATA-AGTCGGTTACAA-TTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTAT-AGTACAGTA-T-AGA-AACCTGTTTTGGTTTTC--AG-TGAAA---------ATG-C-AAATATTA--CCCGAA
gi|3 : GTGTAGCTTTTA-G--T-ACTTAGG---G-A-----GT-GCGA---TTTTCCCGAACT-AACAGACGT---CAACGAAA--ATCA-TTCGGCCG---A-A----CCTCGG---CGTGGTAC-CGGAAC-C-TTTAC-------ACAAT-----C--GCCGA---------GG--GTGTGCC---GAA-----------GT-----GAC---AG-AAAT-------G---GG-A-CGTG---CCA------AGA--CGA-CAAG-----G-ATTGAA--G----AGGGC-G-AT-TT-GCCTGCC-CG-AAA--CGGTAAACA-ATTT---GT-AC----AAA--CGC-AG---TA--TG-G---AGGTCTCCA-GG--A---T-CAG--AG-G-T-GAGAT-----ATTGA--------GAC-CA-AT-----CTG-T--T-CA-AAAAATT-GGT-AAAGAAA-ATAGTTTGAATATA-ATC-GGC-GG-TTA--TTATAG-CGG--T--CTCAG----ATAA-CTCAAAAAT-CACATC-C-----CTAG-TAA--AGTA----------TA-A-TAGATCCCC-GACA---A-GT-GT--AA-TGTATG--T-AG-CATGAT-AAAA--TCGTGT--TAGAA-TTCT-TATAGTA-AC-AGGAATCA-GTGGTATCAACGCA-TCAAGATGTG-TTG---AGGCCGA-TT-GATCCAA-GTTA----TGTTG---TTGAGTCTAAA-T-TCTTT-TTTCGAT-----TAGACGTT-ATCTCCGCG-T---ATTCCCGTTTGTGAAAT--GAAAGTAGAC------------------------ACAAG-CTGCTCG--------GAGA--------------TGATC--TGTAA--A-TGT-ATGTTG--GAGC-AAGTTTTTGA-GATATATTTTAGTGTGG--AATTA----A----TTGTG-CAAG---TTGA-TA-AAACACA-CAGGTG--ATATTAT-------GAAGTTTA------T-ATGAA-AACAAT-TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCC----CCCCCTTC
gi|3 : aatgaCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACAACTGTA-TGTTTAGTCC-AGATAGGAAATAAGGAAAGGAAAT-----TGTCTT----TAG-GA-TGAAT--GA-TTTGA--TCA-TAATACT--ATT-AAATTGTG-T-G-AATACTTCAACA-CATAAA-ACAAG-TCAATA-CTGCCATATA-TAGGTACA-AACCATATGGAACTATGGCATGC-GTGTT-AGATTT-------------------TTTTAAAAAATTC-ATTACTGGTAAATTGTACCATGTACAT-ACAGGTA----GAAAAAGATTACCAGTTATGA-ATCATGCATTTTTTC--TTTTAACAAATATACACAAT-AACATTTAACATA-T-TTAATCCATAGATTGAAGGCCA-GATCGAAGGGGTGT--GGTACTTCAAGTTTTGAAGTT-GTGGGACCATGAGGAGATTGTACCAGCCTACCATCGTGAAGGCTTTGGATGAACAGATAGTTGGAGAATTCGTGGAACTTGTT-TTCTGTC-C-GAGGGTA-TGT-GGGGTCTGGCCAGAAGTGTGGTCTCCCT--CTTCAGTTCA-TGCATGCAACCACAATTCAA--CATACAGTCCTTTCTGTCAATTTAAAGGTATTTTTTATTTTGTTTATAT-ACATCCC-TATATAGTCG--TACAATTTGTTGCAAGAGCCATTTGCTGG--ATAAAAAGATATCTCA-TTGACCAAGTGGT-TTTTTTTATGAGTAaaatgtgggaggcactagtggtcatctcatacaactgtatgtttagtccagataggaaataaggaaaggaaattgtctttaggatgaatgatttgatcataatactattaaattgtgtgaatacttcaacacataaaacaagtcaatactgccatatataggtacaaaccatatggaactatggcatgcgtgttagatttttttaaaaaattcattactggtaaattgtaccatgtacatacaggtagaaaaagattaccagttatgaatcatgcattttttcttttaacaaatatacacaataacatttaacatatttaatccatagattgaaggccagatcgaaggggtgtggtacttcaagttttgaagttgtgggaccatgaggagattgtaccagcctaccatcgtgaaggctttggatgaacagatagttggagaattcgtggaacttgttttctgtccgagggtatgtggggtctggccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaacatacagtcctttctgtcaatttaaaggtattttttattttgtttatatacatccctatatagtcgtacaatttgttgcaagagccatttgctggataaaaagatatctcattgaccaagtggttttttttatgagta
gi|4 : aatgagtgtagcttttagtacttagggagtgcgattttcccgaactaacagacgtcaacgaaaatcattcggccgaacctcggcgtggtaccggaacctttacacaatcgccgagggtgtgccgaagtgacagaaatgggacgtgccaagacgacaaggattgaagagggcgatttgcctgcccgaaacggtaaacaatttgtacaaacgcagtatggaggtctccaggatcagaggtgagatattgagaccaatctgttcaaaaaattggtaaagaaaatagtttgaatataatcggcggttattatagcggtctcagataactcaaaaatcacatccctagtaaagtataatagatccccgacaagtgtaatgtatgtagcatgataaaatcgtgttagaattcttatagtaacaggaatcagtggtatcaacgcatcaagatgtgttgaggccgattgatccaagttatgttgttgagtctaaattcttttttcgattagacgttatctccgcgtattcccgtttgtgaaatgaaagtagacacaagctgctcggagatgatctgtaaatgtatgttggagcaagtttttgagatatattttagtgtggaattaattgtgcaagttgataaaacacacaggtgatattatgaagtttatatgaaaacaattttcttcgttgagctatcttggtgcT--CTCAG----G-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG----------A-A-TAGAT-CCC-GACA---ATGT-GCAGAA-TGTATG--T-AGCCATCAT-AAAAC-TGTTGTGGTAGAA-TTCTATATAGTACACAAGGAATCA-GTGGTATCAAC-CA-TCAAGATGTG-TGG---GAG-CGA-TTGGATCCATTGTTA--TATGTTT---TTGTG---AAG-TCTCTTC-TTTCGAT---C-TAG-CATTAATTTCCCCG-T---ATTCCCCGTTTTGAAATGAAAAAGTAGAC------------------------ACAAGATTGCTCG--------AAGGA----A----AC--TTATC---GT-A--A-TGT-ATGTTGGAGAGC-AAGTT----ACGATATA-TTTAGT---G--AA-TA----A----TTGGG-CAAG---TTGA-T--AAACACAACAG-TG--ATATAAT-------GAGATTTA-------AATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGCTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCACCCCCCCCCCCCTCAAATGTGG-GAGGC-A-TAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-G-AAAGGAAATG---ATGTCTT----TAG-GACGGAAT--GAATTTGGATTCAGTAATACCTAATT-AAATTGTGCTAGCAATACTTCAA-A-CA-AAACACAAGGTCAATA-CTG------A-TAAG--CACAACCATATG-AACCATGGCATGCAGTGTTCAGATTTGT----TTTTTTTTTTTTTTTTTCTAAATTTC-ATTACTTGTAA-TTGTAC-ATGTACATTACAGGTACTGAAAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAA-GCCA-AA------GGGTGTCGAGTACTTCCATTTATGAAGTTTGTGGAACCA-GAGGAAG--GTACCAGC-TAC-AT-GTGAAGGCTTGAGCGGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTT-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGT-GTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTG-TTATATAACATCCTTTATA-AGTCGGTTACAA-TTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTAT-AGTACAGTA-T-AGA-AACCTGTTTTGGTTTTC--AG-TGAAA---------ATG-C-AAATATTA--CCCGAA
gi|5 : TG-AGCTTTTA-G--T-AACTAGG---GCG----CGT-GC-A---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNNN---NNN-----------NNNNNNNGAC---AGAAAAT-------G---GG-AACGTG---CAAGAGTCAAGA--CGG-CAA--A---G-ACGGA----------------------GCCT-CCGCGCAAA--CG--AAA-C-TTTT---GTCAC--AAAAA--T-C-AGCGTAA--TG-G---AG----CCA-GG--A---C-CAG--AG-GGT-GG-AT-----GTGGTGTCATAGTGAA-C--ATT----CTA-T--T-C--AAAGATT-GGTTAAGAAAA-GTTGTTT-GATAAT-ATCTGGCAGG-TTAT---ATAG-CGGTC-----AAG----A-GA-CTAAAAAT-ACA-ATC-C-----CTAG-TAA----------------TG-A-T---C-CCC-GACA---ATGT-GTA-AA-TGTATG-----ACCATAAT-AAAAATTGTTTTT-GAACA-TTCT--------------GAATTAGGTGGTA-TAAC-CA-TCAAGATGTG-TTG---AAG-CAA-TTG--TTC-----------TGACT---TCAAG---AAGTTCTCATC-TTTCGAG---CTTAG-TGCTTATTCTCCCG-TGTAATTT----TTGTAA---------------------------------------ACAAAACTGCTCG----------GGG----ATTGCACAAGGATC--TGT-A--ATTGT-ATGTTG--GAGC-AG--TTTTGA-GATATATTTTAGT---G--AA-TATGTCAATGTTTGTG-C-AG---TTGATT--TACCACA-CAGGTG--ATATAATCATCAACTAGATTGAATTCACTAATGAC--ACAAATTT--TCTTACCGTTTGAGCTATCTTTGTGCCCCCCCCCC-CCCCCTTC
gi|5 : attaaggtttgtactggtgtCCCCCCCCCCCCCCCTTCAAATGTGGCGAAGCAACT-GTTTGGTCATCTCATACACTTGTAC-GTTCAGTGCCAGATAGGAA-TA-GGAA--GAAACAAGTATGTCCTTTAATAGAAACTGAATAGAAATTTGTGTTCA-TAATACTAAATC-AAATTGTG--AG-AATACTTCAA-ACCA-AAA-ACAA-GTCAATACCTGC-----ACTGGGT-CAC-ACCATaaatgtggcgaagcaactgtttggtcatctcatacacttgtacgttcagtgccagataggaataggaagaaacaagtatgtcctttaatagaaactgaatagaaatttgtgttcataatactaaatcaaattgtgagaatacttcaaaccaaaaacaagtcaatacctgcactgggtcacaccatggattgctagtgcaagtgcaaaactggtagacaaatcaaattttattgct
gi|6 : attaaggtttgtactggtgttgagcttttagtaactagggcgcgtgcatttcccgaactaacagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaaatgggaacgtgcaagagtcaagacggcaaagacggagcctccgcgcaaacgaaacttttgtcacaaaaatcagcgtaatggagccaggaccagagggtggatgtggtgtcatagtgaacattctattcaaagattggttaagaaaagttgtttgataatatctggcaggttatatagcggtcaagagactaaaaatacaatccctagtaatgatccccgacaatgtgtaaatgtatgaccataataaaaattgtttttgaacattctgaattaggtggtataaccatcaagatgtgttgaagcaattgttctgacttcaagaagttctcatctttcgagcttagtgcttattctcccgtgtaatttttgtaaacaaaactgctcggggattgcacaaggatctgtaattgtatgttggagcagttttgagatatattttagtgaatatgtcaatgtttgtgcagttgatttaccacacaggtgatataatcatcaactagattgaattcactaatgacacaaattttcttaccgtttgagctatctttgtg-AGCTTTTAAG--T-AACTAGG---G-AGCGGCGTTGCGAATGTTT-C--------AACCGACAC---TAT-AAAA--ATCACTTCGGGCGCGCACA----CCTCGG---C-TGATAC--GGAAC-CATATAGG------ACAATT----C--ATCGACCTTCGATGGGT-GTGTGCC---GAGT----------G------GAC---AGAAAAT-------GTCGGG-A-CATG---CAA------AGA--CGG-CAAG-A---G-ATTGAA---A---GGAGC-GCAT-TT-GCCT-CCGCGCAAAGACG--AAC-A-ATTT---GTGACCAAAAAA--C-C-AG--T-G--TG-GGGAAG----CCTAGG--ATTTC-CAAGAAG-G-T-GA-AT-----ATTG---------G-C-C--ATAAT--CTG-T--TTC--AAAAATTTGGC-AAGAAAAAGTCGTGTTGATAAT-ATC-GGCAGG-TTAT-CTATAGACGGT-T--CTCAG----A-GACCTCAAAATTACATATTGC-----CTAG-TAAGTAGTAAGCGAT----TA-A-TAGATCCCC-GACA---ATGT-GTA-AATTGTATG--TAAGCCATGAT-AAAA---AATGTG-TAGAATTTCT-TATAGTA-ACAAG--ATC--GTGGTAGCAAC-CA-TCAAGAT-TG-TTGTTTGAG-CGACTTTGATCCAT-GTTA----TGTTTGTGTTCA----AAG-TCTCTTC-TTTCGA------TAG-AGTT-AT-------------TTCCCCGTTGTGAAATTTGAAAGTAGAC------------------------ACAAG-CTGCTCG--------GAAGATTGCA----AC--TTATCTATGT-ATTA-TGTAATGTTTGTGAGCGAAGTTTTGAG-GATATA-GTTAGT---GTAAA-TA----A----TTGTGACAAAGTTTTGA-CTAAAACACA-CAGGTG--ATATAAT-------GA-ATTTAT-----TAATGAA-AACAA--TTTGTCTT--CG-TTggattgctagtgcaagtgcaaaactggtagacaaatcaaattttattgct
gi|7 : GTG-AGCTTTTA-AGTT-AACTAGG---G------TGT-GCGA---TTT-CCCGAACT-AA-----------------A--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNNN---NNN-----------G-------AC---AGAAA-T-------G---GG-A-CGTG---CCA------AGA--CGG-CAAG-A---G-ATTGAA--G-------GC-G-AT-TT-GCCT-CC-CGCAAA--CG--AAA-A-ATTT---GT-AC--ACAAA--C-C-AG--T-A--TG-G---AG----CCA-GG--A---C-CAG--AG-G-T-GA-AT-----ATCG---------A---C--ATA----TTA-T--T-C--AAAAATT-GGT-AAGAAAA-GTCGTTT-GATAAT-ATT-GGCAGG-TTAT-TTA--G-CGGTCT--C--AC----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCCCGACA---ATGT-G----A-TGTATG--T-AGCCATGATAAAAA--TGTTGT--TAGTA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TT----GAG-CGA-TT-GATCCAT-G-----T-TGTTT---TTCAG---A------CTTC-TTTCGAT-----TAG-AGTTA----------------TTCCCGTTGTGAAA-GAGAAAGTAGA
gi|8 : TG-AGCTTTTA----T-AAC---A---G-A----C-T--CGA---TTT-CC-GAACT-AATTGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNNN-------NNNNN-----N--NNNNN---------NN--NNNNNN-------------------------GAC---A-AAAAT-------G---GA-G-CG-------G------AGA----G-CAAGGA---G-ATTGAA--GA------GCAG-AT-TT-GCT---C-CGCAAA--CG--AAA----TTT---GT-AC--AAAAA--C-C-AG--T-A--TG-G---AG----CCA-GG--A---C-CAG--TGTG-T-----T-----ATCG----------ACAT--AT-----TCAGT--T-C--AAACATT-G-T-CAGAA---GTCGTT---GTAAT-ATT-GGC--G-TTAT-TACTA--CG---T--CTCAGGAGGA-GA-CTCAAAATTACATACC-CTATACCTAG-TAA--AGT-G---------TA-A-TAGAT-CCC-G-CA---ATGTTGTA-AA-TGTATG--T-G--CATGAT-AAAA--TGTTGT--TAGAA-TTTT-TAGAA-----AAGGAATCA-GTGGTACCAAC-CAGTCAAGATGTGTTTT---AAG-C---TTGGATCC----TTG--T-TGTTT---TTCAG---A------CTTCTTTTCGATTAAC-TAG--GTTA--TTCCC
gi|9 : gtatgagtgtTTA-G--TCAACTAGGCGGA-A----CGTTGCAACC-TTT-CCCGAACTTAATAGACGTAAACA--GAAATCATC--TTCA-CCG---A-ATCACCCTCGGGCCCATGATACACAGACCAC-TATACGTCAGGCAGAATGATTCCTGGCCGA---------AGTAGT-TGCCTCCGAGTATGGATCATTG------GATGCGAGAAAATAAGCAGAG---GGCA-CGTAGCACAA------AGAATCGGTC--G-A---GTATTGAA---A---CGAGCCG-ATGTT-GCT---C-CG-AAA--CG--AAA-AGATTTATTGT-AC--AAAAATTC-C-GA--GTACTTG-G---AT----CCC-AGCGA---C-CAG--AG-G-TTGACATTAAGAATCG----------AC-C--ATATATTCTA-TCTT-C--AAAAATT-GGT-AA
blockSeqs : T AGT C CGG AGCGG T ATG T T CA AAA AC TC AC NN CGCACA GCCCA AC ACTATACGTCAGGCAGAATGATTCCTGGCCGAAGTAGTTGCCTCCGAGTATGGATCATTG GCG AAGCAGA TCG C A GCA GAGTCA AT T G AAA T CAGATTGAGA A C G T TG A C GA GT CAA ATT C CA TT G G CGTAA C GGA GTCT TA CG TTT A GA T G T G TAAGA GTGTCATAGTGAACATT G CT T GA T T AA C T . T A A TA GA TCTAT T GAGG T C T G TATAC T GT AGCGATT C T C C AAT T AG T CTT A AT GG T A C G T G G T GTTT C C G ATTGTTATA GTG G TCT AGTTC T TAAC AC TATTCTCCCGTGTA TGA . A GAAGATTGCA AA T TAT A TT T A GGA G T TTTGA T GTG TA T TGTCAATGT A GTT CTA A G . CATCAACTAGATTGAATTCACT . AT TG AC T G CCT A C A C TT CT A A G AAGT TTAA A C AG GA G CT . CTAGC C C T C GG C CCATAT C TA G T TTAATTTTTTT T T T T AT C TT AC A . TA . ATG T G . TCGAAG CG T A T A T TT C C C T G CG CG . CT GGTA . TG C G TC C A C C G T T T A T T GT T GA AT G CA GGT G TT T CA T AAACAAAAG T A A AC
blockSeqs : . AG . . CG T CC . . CA . T . N NN AATCAC NN N CATATAGGACAATTCATCGACCTTCGATGGGTGTGTGCCGAGTG . . . . . . . . . . . . GAAGA C . . . T G C . . AGA . G . A . . GTACT . . . C . . . . . . . C . GACCATATATT . . . A . . A A T . . A . T G TCT T . . . T . . . . GT . . C . . . AG . TA . C GG . A C . T . . . G . . G ATTGTTATA . G . AGTC . AA A AATTTCCCCGT TGA . A GGGATTGC . G T . . . . GGA . T TTTGA T . . . A . . TA A G . GAAGTTTAT . T . . . G CCT A . . C . CT . . G G . . C . GA G CT . CTAGC . . . C GG . C . T G C GTTTTTT T C T . T . TT AC A . . . ATG . . . . CG G T T A . . . . . T T AT . . CT A . . . . TC C A C . . . . . A T . GT . G A G . T G T T . . . T . A .
blockSeqs : . G . . A . . . . CA . . . N NN NN NN N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . . . . . . . . . GAGG . . . . T G C . . AA . . . . . . TTA . . . C . . . . . . . . . GAGACCAAT . . . . . . A T G . . A . T G TCT T . . . T . . . . GT . . . . . . A . T . C T . . . . T . . . G . . G AAGTTA . G . AGTC . CT C AATTTCCCCGT TTT . A AAGGAA . T T . . . . TGT . T TTGAG . . . . A . . TT . G . GAATTTATT . . . . . G CC C . . . . T . . . G . . C . TG . TA . TAG . . . . A . C . T . C GTTTTTT T A A . T . T A A . . . T . . . . . T A . A . . . . . T G CG . . C A . . . . . . . C . . . . . . . . . . G A . . T . T . . . . . . T .
blockSeqs : . G . . A . . . . CA . . . N GC NN NN N CTTTACACAATCGCCGAGGGTGTGCCGAAGT . . . . . . . . . . . . AGGA . . . . T . C . . AA . . . . . . TT . . . C . . . . . . . . . GGCCATAAT . . . . . . A C T . . A . T G TC T . . . T . . . . GT . . . . . . A . T . . G . . . . G . . . G . . T ATGTTA . A . AGTC . C C AATCCCCGTT GA . . AAGGAA . G . . . . . G . T AC . . . . A . . T . . . GAGATTTA . . . . . T . . . . . C . . . . . . C . A . T . TG . . . . G . . . . . . . . C T . . . T . . . . . . . . . T .
blockSeqs : . G . . A . . . . CC . . . A NN NN CG C NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . . . . . . . . . ACGA . . . . T . C . . CT . . . . . . TA . . . A . . . . . . . . . GACGCAT . . . . . . A C . . . A . T G TT T . . . T . . . . G . . . . . . A . T . . . . . . . C . . . G . . G ATGT . C . AGTC . C T ATCTCCGCGT T . . GAGA . T . . . . . G . . AC . . . . A . . T . . . GAGATTTA . . . . . . . . . A . T . AG . . . . G . . . .
blockSeqs : . G . . A . . . . TT . . . N GG AA NN N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . . . . . . . . . GA . . . . T . C . . AA . . . . . . TA . . . A . . . . . . . . . GGACTAT . . . . . . . C . . . . . T . T . . . . T . . . . T . . . . . . A . T . . . . . . . C . . . T . . . TTGT . C . AAT . . A AT .
blockSeqs : . G . . A . . . . TA . . . N NN NN NN N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . . . . . . . . . GA . . . . T . C . . AA . . . . . . TG . . . A . . . . . . . . . GACATAT . . . . . . . . . . . . . . . T . . . . . . . . . G . . . . . . . . T . . . . . . . . . . . . . . . . . C . . . . A A
blockSeqs : G . . A . . . . . . . . N NN NN NN N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNG . . . . . . . . . . . . G . . . . . . . . . A . . . . . . TA . . . A . . . . . . . . . GACATA . . . . . . . . . . . . . . . T . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . C NN C . NNNNNNNNNNNNNNNNNNNNNNNNN . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TA . . . C
blockSeqCons : GA******** N* GACATAT***************** T* TCT** GT********* A* G*** ATGTTA***** AGTC* AATTTCCCCGT**** TGA ************************ GAGGAA**************** GGA T*** ** GAGATTTATT************ CC* CT G*** CTAGC C***** T* TTTTTT***** T* A*
originalCons : TGTG-AGCTTTTA-G--T-AACTAGG---G-A----CGT-GCGA---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ATCA-TTCGGCCG---A-A----CCTCGG---CGTGATAC-CGGAAC-C-TNTAC-------ACAAT-----C--GCCGA---------GG--GTGTGCC---GAG-----------G------GAC---AGAAAAT-------G---GG-A-CGTG---CAA------AGA--CGG-CAAG-A---G-ATTGAA--GA---AGAGC-G-AT-TT-GCCT-CC-CGCAAA--CG--AAA-A-ATTT---GT-AC--AAAAA--C-C-AG--TTA--TG-G---AG----CCC-GG--A---C-CAG--AG-G-T-GA-AT-----ATCG---------GAC-C--AT-----CTA-T--T-C--AAAAATT-GGT-AAGAAAA-GTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TTATAG-CGGTCT--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCC-GACA---ATGT-GTA-AA-TGTATG--T-AGCCATGAT-AAAA--TGTTGTG-TAGAA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TTG---GAG-CGA-TTGGATCCAT-GTTA--T-TGTTT---TTNAG---AAG-TCTCTTC-TTTCGAT---C-TAG-NGTTAATTTCCCCG-T---ATTCCCCGTTGTGAAATGAGAAAGTAGAC------------------------ACAAGACTGCTCG--------AAGGA----A----AC--TNATC--TGT-A--A-TGT-ATGTTGGAGAGC-AAGTTTTTGA-GATATA-TTTAGT---G--AA-TA----A----TTGTG-CAAG---TTGA-T--AAACACA-CAGGTG--ATATAAT-------GAGATTTA------TAATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCNCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-GGAAAGGAAATG---ATGTCTT----TAG-GACTGAAT--GAATTTGGATTCA-TAATACCTAATT-AAATTGTG-TAG-AATACTTCAA-A-CA-AAA-ACAAGGTCAATA-CTGC-----A-TGGGT-CACAACCATATGGAACCATGGCATGCAGTGTTCAGATTTGT----TTTTTTTTTTTTTTTTTCTAAATTTC-ATTACTGGTAA-TTGTAC-ATGTACATTACAGGTACTGAAAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAAGGCCA-AA------GGGTGTCGGGTACTTCCANTTNTGAAGTTTGTGGAACCATGAGGAGGTTGTACCAGC-TAC-AT-GCGAAGGCTTNGGNNGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTC-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGTGGTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTGTTTATATAACATCCCTTATA-AGTCGGTTACAATTTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTATGAGTACAGTA-T-AGATAACCTGTTTTGGTTTTC--AGTTGAAA---------ATGTC-AAAAGTTA--CCCGAA
finalCons : TGTG-AGCTTTTA-G--T-AACTAGG---G-A----CGT-GCGA---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ATCA-TTCGGCCG---A-A----CCTCGG---CGTGATAC-CGGAAC-C-TNTAC-------ACAAT-----C--GCCGA---------GG--GTGTGCC---GAG-----------G------GAC---AGAAAAT-------G---GG-A-CGTG---CAA------AGA--CGG-CAAG-A---G-ATTGAAGA--------GC-G-AT-TT-GCCT-CC-CGCAAA--CG--AAA-A-ATTT---GT-AC--AAAAA--C-C-AG--TTA--TG-G---AG----CCN-GG--A---C-CAG--AG-G-T-GA-AT-----ATCGACATAT-----------------CTA-T--T-C--AAAAATT-GGT-AAGAAAA-GTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TTATAG-CGGTCT--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAGT---------A-A-TAGAT-CCC-GACA---ATGT-GTA-AA-TGTATG--T-AGCCATGAT-AAAA--TGTTGTG-TAGAA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TTG---GAG-CGA-TTGGATCCATGTTA-----TGTTT---TTNAG---AAGTC-TCTTC-TTTCGAT---C-TAG-NGTTAATTTCCCCGT----ATTCCCCGTTGTGAAATGAGAAAGTAGAC------------------------ACAAGACTGCTCGGAGGAA----------------AC--TNATC--TGT-A--A-TGT-ATGTTGGAGAGC-AAGTTTTTGA-GATATA-TTTAGT---G--AA-TA----A----TTGTG-CAAG---TTGAT---AAACACA-CAGGTG--ATATAATGAGATTTATT------------AATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCC-CCCCCTTCCCCCCCCCCCCCNCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-GGAAAGGAAATG---ATGTCTT----TAG-GACTGAAT--GAATTTGGATTCA-TAATACCTAATT-AAATTGTGCTAGCAATACTTCAA-A-CA-AAA-ACAAGGTCAATA-CTGC-----A-TGGGT-CACAACCATATGGAACCATGGCATGCAGTGTTCAGATTTTTTTTT-----TTTTTTTTTTTTCTAAATTTC-ATTACTGGTAA-TTGTAC-ATGTACAT-ACAGGTA-TGAAAAAAAGATTACCAGTTATGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAAGGCCA-AA------GGGTGTCGGGTACTTCCANTTNTGAAGTTTGTGGAACCATGAGGAGGTTGTACCAGC-TAC-AT-GCGAAGGCTTNGGNNGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTC-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGTGGTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTGTTTATATAACATCCCTTATA-AGTCGGTTACAATTTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTATGAGTACAGTA-T-AGATAACCTGTTTTGGTTTTC--AGTTGAAA---------ATGTC-AAAAGTTA--CCCGAA
Alignments
lowQualScore : 111 1111111111 777777777777777777777777777777777777777777777777777777777777777777777777777777 2222222 1111111 22222222 1 1 11111 1111 11111 2222222222222222222 11 11 11111 11111 33333333333 11 1 11 22 1 1 1111 1 1 11111111 11111 22222 333333333333333 111 666666666666666666666666 1 444444444444444444 111 111 111111 1 111 1 111111111 111 1111 1 333333333333333 22 11 1 1 11 11 11 2222 1111 1 22222 1 11 222222 11 1 1 1 22222 111111111 3333333333 3333333333 11 333333333333333 111 111 11 11 1 222 1 1 1 222222 11 1 1 11 1 1 1 22 1 111 11111 1 11 1 1 11 1 1 1 1 1 1 1 1 1 11 1 11 1111 1 11 2222 1 111 1 11 2 333333333 1 11
lowQualScore : 5 6666 4 777 555 8888 4 222 4 4 55 777 99 55 66 22 5555555555 99999 66 0 777777777777777777777777777777777777777777777777777777777777777777777777777777 777 0 0 0000000 8 777 2222222 55 4 4 777 4 55555555 55 8 4 4 4 44 2 5 55 55 7777 777 2 55 99 4 4 55 99999 4 777 2222 55 66 777 4 66 4 4 4 8 11111 66 4 2222222222222222222 44 8 66 00 4 4 5 0 1 3 3 5 5 3 5 44 77 44444 4 9999 4 4 4 11111 4 66 22222222222 4 4 8 4 777 4 33 4 7777 0 66 55 5 0 0 0 0 5 5 5 5 5 4444 5 5 5 0 66666666 888 1 777 44444 4 88888 99 222222222222222 444 444444444444444444444444 5 111111111111111111 2 1 666 6 99 6 6 666 6 3 777777 3 111 99 3 999999999 6 111 6666 3 6 555555555555555 11 6 55 99 99 6 5 6 1 8 8 0 0 11 00 8 88 0 4444 4444 6 1 99 777 3 77 6 99999 6 6 6 3 66 6 333333 6 44 0 0 3 6 00000 0 333333333 0 8 88 5555555555 8 6666666666 11 000000000000000 6 444 444 0 33 33 0 111 0 5 0 888888 77 1 1 5 3 5 88 0 0 0 2 1 22 33 0 666 88888 0 33 0 5 88 5 3 2 0 0 0 0 5 5 5 0 11 5 22 4444 5 33 0000 0 111 0 11 0 222222222 0 8 1 11
lowQualScore : . .... . ... ... .... . ... . . .. ... .. .. .. .. .......... ..... .. . .............................................................................. ... . . ....... . ... ....... .. . . ... . ........ .. . . . . .. . . .. .. .... ... . .. .. . . .. ..... . ... .... .. .. ... . .. . . . . ..... .. . ................... .. . .. .. . . . . . . . . . . . .. .. ..... . .... . . . ..... . .. ........... . . . . ... . .. . .... . .. .. . . . . . . . . . . .... . . . . ........ ... . ... ..... . ..... .. ............... ... ........................ . .................. . . ... . .. . . ... . . ...... . ... .. . ......... . ... .... . . ............... .. . .. .. .. . . . . . . . . .. .. . .. . .... .... . . .. ... . .. . ..... . . . . .. . ...... . .. . . . . ..... . ......... . . .. .......... . .......... .. ............... . ... ... . .. .. . ... . . . ...... .. . . . . . .. . . . . . .. .. . ... ..... . .. . . .. . . . . . . . . . . . .. . .. .... . .. .... . ... . .. . ......... . . . ..
lowQualScore : 0 1111 0 000 444 5555 0 555 0 0 66 000 55 55 99 99 5555555555 00000 77 4 999999999999999999999999999999999999999999999999999999999999999999999999999999 000 8 8 0000000 0 000 1111111 55 0 0 000 0 55555555 55 0 0 0 0 88 0 0 55 55 2222 000 0 55 55 0 0 55 33333 0 000 5555 00 11 888 4 11 4 4 4 9 11111 11 4 2222222222222222222 66 9 11 66 4 4 0 1 4 2 1 0 0 2 0 44 55 44444 6 4444 4 4 4 11111 4 11 77777777777 4 4 9 4 888 4 44 4 0000 0 99 00 0 0 1 0 1 0 4 0 0 0 4444 0 0 0 0 88888888 888 0 888 88888 4 99999 88 333333333333333 333 222222222222222222222222 5 222222222222222222 5 0 555 7 22 7 7 777 7 2 222222 3 777 22 3 333333333 7 777 0000 3 7 333333333333333 00 7 88 22 22 7 0 0 0 0 0 0 8 00 88 0 00 8 9999 2222 7 0 22 888 3 22 7 22222 7 7 7 3 00 7 333333 7 00 0 8 2 0 00000 8 444444444 8 0 88 0000000000 0 0000000000 00 666666666666666 0 000 000 8 88 88 0 555 0 0 0 888888 55 0 0 5 2 5 55 0 0 0 0 0 00 88 0 000 55555 0 88 0 0 00 0 2 5 0 0 0 0 5 5 5 0 88 5 55 8888 0 88 8888 0 000 6 00 4 000000000 6 0 4 00
consensus : TGTG-AGCTTTTA-G--T-AACTAGG---G-A-CG----T-GCGA---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ATCA-TTCGGCCG---A-A----CCTCGG---CGTGATAC-CGGAAC-C-TNTA-C-------ACAA-T-----C--GCCGA--------GG--GTGTGCC---GAG-----------G------GAC---AGAAAAT-------GGG-ACGTG---CA------AAGA--CGG-CAAG-A---G-ATTGAA--------GA--GC-G-AT-TT-GCCT-CC-CGCAA--ACG--AAA-A-ATTT---GT-AC--AAAAA--C-C-A--GTTA--TG-G---AG----CC-AGG--A---C-CA--GA-G-GT-GA-AT-----AT--CG-A---C---AT-A--------T-CTA-T--TC--AAAAA-TTGG-TAAG-AAAAGTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TTATAG-CGGTCT--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCC-GACA---ATGT-GTA-AA-TGTATG--T-AGCCATGAT-AAAA--TGTTGTG-TAGAA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TTG---GAG-CGA-TTGGATCCAT-GTTA---T--GTTT---TTNAG---AAG-TCTCTTC-TTTCGAT---C-TAG-NGTTAATTTCCCCG-T---ATTCCCCGTTGTGAAATGAGAAAGTAGAC------------------------ACAAGACTGCTCGG--------AGGA------AACTNATC--TGT-A--A-TGT-ATGTTGGAGAGC-AAGTTTTTGA-GATATA-TTTAGT---G--AA-TA----A----TTGTG-CAAG---TTGA-T--AAACACA-CAGGTGATATAAT---------GA---GATTTAT-AATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCNCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-GGAAAGGAAATG---ATGTCTT----TAG-GACTGAAT--GAATTTGGATTCA-TAATACCTAATT-AAATTGTGCTAG-AATACTTCAA-A-CA-AAA-ACAAGGTCAATA-CTGC-----A-TGGGT-CACAACCATATGGAACCATGGCATGCAGTGTTCAGATTTGTT-----TTTTTTTTTTTTTTTTCTAAATTTC-ATTACTGGTAA-TTGT----------AC-ATGTAC--------ATTA--CAGGTACTGAAA--------AAAAGATTACCAG---TTA---TGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAAGGCCA-AA------GGGTGTCGGGTACTTCCANTTNTGAAGTTTGTGGAACCATGAGGAGGTTGTACCAGC-TAC-AT-GCGAAGGCTTNGGNNGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTC-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGTGGTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTGTTTATATAACATCCCTTATA-AGTCGGTTACAATTTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTATGAGTACAGTA-T-AGATAACCTGTTTTGGTTTTC--AGTTGAAA---------ATGTC-AAAAGTTA--CCCGAA
Reference ( family-1438 ) : TGTG-AGCTTTTA-G--T-AACTAGG---G-A-CG----T-GCGA---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ATCA-TTCGGCCG---A-A----CCTCGG---CGTGATAC-CGGAAC-C-TNTA-C-------ACAA-T-----C--GCCGA--------GG--GTGTGCC---GAG-----------G------GAC---AGAAAAT-------GGG-ACGTG---CA------AAGA--CGG-CAAG-A---G-ATTGAA--------GA--GC-G-AT-TT-GCCT-CC-CGCAA--ACG--AAA-A-ATTT---GT-AC--AAAAA--C-C-A--GTTA--TG-G---AG----CC-NGG--A---C-CA--GA-G-GT-GA-AT-----AT--CG-A---C---AT-A--------T-CTA-T--TC--AAAAA-TTGG-TAAG-AAAAGTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TTATAG-CGGTCT--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCC-GACA---ATGT-GTA-AA-TGTATG--T-AGCCATGAT-AAAA--TGTTGTG-TAGAA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TTG---GAG-CGA-TTGGATCCAT-GTTA---T--GTTT---TTNAG---AAG-TCTCTTC-TTTCGAT---C-TAG-NGTTAATTTCCCCG-T---ATTCCCCGTTGTGAAATGAGAAAGTAGAC------------------------ACAAGACTGCTCGG--------AGGA------AACTNATC--TGT-A--A-TGT-ATGTTGGAGAGC-AAGTTTTTGA-GATATA-TTTAGT---G--AA-TA----A----TTGTG-CAAG---TTGA-T--AAACACA-CAGGTGATATAAT---------GA---GATTTATTAATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCC-CCCCCTTCCCCCCCCCCCCCNCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA-GGAAAGGAAATG---ATGTCTT----TAG-GACTGAAT--GAATTTGGATTCA-TAATACCTAATT-AAATTGTGCTAGCAATACTTCAA-A-CA-AAA-ACAAGGTCAATA-CTGC-----A-TGGGT-CACAACCATATGGAACCATGGCATGCAGTGTTCAGATTT-TT-----TTTTTTTTTTTTTTTTCTAAATTTC-ATTACTGGTAA-TTGT----------AC-ATGTAC--------A-TA--CAGGTA-TGAAA--------AAAAGATTACCAG---TTA---TGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAAGGCCA-AA------GGGTGTCGGGTACTTCCANTTNTGAAGTTTGTGGAACCATGAGGAGGTTGTACCAGC-TAC-AT-GCGAAGGCTTNGGNNGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTC-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGTGGTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTGTTTATATAACATCCCTTATA-AGTCGGTTACAATTTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTATGAGTACAGTA-T-AGATAACCTGTTTTGGTTTTC--AGTTGAAA---------ATGTC-AAAAGTTA--CCCGAA
gi|1 : TGTG-AGCTTTTA-G--T-AACTAGG---G-A-CG----T-GCGA---TTT-CCCGAACT-AATAGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-N-------NNNN-N-----N--NNNNN--------NN--NNNNNNN---NNN-----------N------GAC---AG-AAAT-------GGG-ACGTG---CA------TAGA--CGG-CAAC-A---G-ATAGAA--------GA--GC-G-AT-TT-GACT-CC-CG--A--ACG--AAA-A-ATTT---GTAAC--AAAAA--C-C-A--G-TA--TG-G---AGC---CC-AGG--A---C-CA--GA-G-GT-GA-AT-----TT--CA-AC--C---AT-A--------T-CTA-T--TC--AAAAA-TTGG-TAAG-AAAATTCG-TTTGATAATAATT-GGCAGG-TTA--TTATAG-CGG--T--CTCAG----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAATAATACTACTA-A-TAGAT-CCC-GACA---ATGT-GT--TA-TGTATG--T-AGCCATGATAAAAA--TGT-----TAGAA-TTAT-TATAGTA-ACAGAGGATCA-GTGGTACCAAC-CA-TCAAGATGTG-TT----GAG-CGA-TT-GATCCAT-GTTATGTT--GTTT---TTCAG---A------CTTC-TTTCAAT-----TAG-AGT------------T---ATTCCCCGTCGTGAAA-GAGAAAGTAGATTACCCCGGCATTTATTGTTTACAAACAAG-CTGCTCGGATATTGCAAGGA------AACTGATC--TGT-A--A-TGT-ATGTT--AGAGC-AAG-TTTTGA-GATATA-ATTAGT---G--AATTA----A----TTGTG-CAAG---TTCA-T--AAACACA-CAGGTGATATA-------------------TAATGAATGACAAAAAA--TG--TCTT--CG-TTGAGCTATCTT-GTGCCCCCCCCCC-CCC
gi|1 : agCCCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACACTTGTA-TGTTCAGTCCCAGATAGGAA-TA-GGAAAAGAAAT----ATGTCTT----TAG-GATTGAAT--GAATTTA-ATTCA-TAATAC-TAATTCAAATTGTG-TAG-AATACTTCAA-A-CA-AAA--CAAG-TCAATA-CTGC-----A-TGGGT-TACAACCATATGGAACCATGGCAAGCAGTCTT-AGATTT-TT-----ATTTTTTTT---------AAATT-C-ATTACTGATAA-TTGTACATGTACATAC-ATGTATGAAAAAAGA-TGACCAGTTA-TGATATCAGTATCAGTAAATTAACAAATCTTGAGCTAATTGCATGCATTTTTTTCTTTT--ACAAACATACACAAATAACATTTAAAATA-T-TTAATCCATAGAT-GAAGGCCAGAA------GGGTGT--GGTACTTCCAGTTTTGAAGTT-ATGGA-TCATGAGGAGATTGTACCAGC-TAC-AT-GCAAAGGCTTTGGATGGACAGAGCGTTGGAAAATTG-TGGAACTTGTTGTCTTGTCAAAGGG---ATTATGAGTCTG--CC-AGAAGTGTGGTCTCCCT--CTTCAGTTCA-TGCATGCAACCACAATTCAAAC---ATAGT-CTTTCT-GCCTTTTAAAGGTT-TTTTTT-TTTGTTTATAT-ACATTCC-TATA-AGTCGG-TACAATTTGTTGAGA--GCCATTTGCTGGATA-ATGAAGATATCTCA-TTAAC--AGT--GATTTTTTTATGAGTACAGTATT-AGATAACCTGTTTTGATTTTC--AGTTAAAA---------ATGTC-AAAAGTTA--CCCGAAttcaaatgtgggaggcactagtggtcatctcatacacttgtatgttcagtcccagataggaataggaaaagaaatatgtctttaggattgaatgaatttaattcataatactaattcaaattgtgtagaatacttcaaacaaaacaagtcaatactgcatgggttacaaccatatggaaccatggcaagcagtcttagatttttattttttttaaattcattactgataattgtacatgtacatacatgtatgaaaaaagatgaccagttatgatatcagtatcagtaaattaacaaatcttgagctaattgcatgcatttttttcttttacaaacatacacaaataacatttaaaatatttaatccatagatgaaggccagaagggtgtggtacttccagttttgaagttatggatcatgaggagattgtaccagctacatgcaaaggctttggatggacagagcgttggaaaattgtggaacttgttgtcttgtcaaagggattatgagtctgccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaaacatagtctttctgccttttaaaggtttttttttttgtttatatacattcctataagtcggtacaatttgttgagagccatttgctggataatgaagatatctcattaacagtgatttttttatgagtacagtattagataacctgttttgattttcagttaaaaatgtcaaaagttacccgaagcagataatattctatacaattgtgcaat
gi|10 : agtgtgagcttttagtaactagggacgtgcgatttcccgaactaatagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaatgggacgtgcatagacggcaacagatagaagagcgatttgactcccgaacgaaaaatttgtaacaaaaaccagtatggagcccaggaccagaggtgaatttcaaccatatctattcaaaaattggtaagaaaattcgtttgataataattggcaggttattatagcggtctcagagactcaaaattacatatccctagtaaagtaataatactactaatagatcccgacaatgtgttatgtatgtagccatgataaaaatgttagaattattatagtaacagaggatcagtggtaccaaccatcaagatgtgttgagcgattgatccatgttatgttgtttttcagacttctttcaattagagttattccccgtcgtgaaagagaaagtagattaccccggcatttattgtttacaaacaagctgctcggatattgcaaggaaactgatctgtaatgtatgttagagcaagttttgagatataattagtgaattaattgtgcaagttcataaacacacaggtgatatataatgaatgacaaaaaatgtcttcgttgagctatcttgtgTA-G--T-A-CTAGG---G-A-CG----T-GCGA---TTT-CCCGAACT-AA-----------A--AAAA--NNNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-N-------NNNN-N-----N--NNNNN--------NN--NNNNNNN---NNN-----------N------GAC---AGAAA-T-------GGG-A-GTG---CC------AA-A--TGG-CAAG-AAAAG-ATTGAA--------GA--GC-G-AT-TTTGCCT-CCACGCAA---CG--AAA-A--TTT---GT-AC--AAACA--A-C-A--GTT------G---AG----CC-CAG--A---C-CA--GA-G-GT-GA-AT-----AT--CG-A---C---GC-A--------T-ATA-T--TT--AAAAA-TTGG-TAAG-AAAAGT--TTTTGAT-AC-ATC-GACAGGATTATATTATAG-CGGTCT--C---A----A-GA-CTCATAATTACATATC-C-----CTAGTTAA--AGTAG---------TACATTAGAT-CC---ACAAATATGT-GTA-AG-AGTATGCTT-AGCTATgcagataatattctatacaattgtgcaat
gi|11 : gttgtaTTTTTCATGAGTACAGTA-TTAGATAACCTGTTTTGATTTTC--AGTTAAAA---------ATGTC-AAAAGTTA--CCTGAA
gi|12 : TGCG-AGCTTTTA-G--T-AACTAGG---G-A-CC----T-GTGA---TTT-CCCACACT-AACAGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-N-------NNNN-N-----N--NNNNN--------NN--NNNNNNN---NNN-----------N------GAC---AGAAAAT-------GGG-ACGTG---CA------AAGA--TGG-CATG-A---G-ATTGAA--------GA--GC-G-AT-TT-GCCT-CC-CGCAA--ACG--AAA-A-ATTT---GT-AC--AAAAA--C-T-A--G-TA--TG-G---AG----CC-gcagataatattctatacaattgtgcaatacagtacggctagtaccagcatggggcatatttgttcttcaagtattgttttcatttcacaggcagcaggatacatcattcttcatatgaaagtagggaagtaacttcatatatatgcatctggatgtggtttagaagagtctcatgatatagacaaaataccagcaccattgaattatggaacctctcaatgcagcattagaa
gi|13 : atgag---ATGTCTT----TAG-AACTGAAT--GAATTT-GATTCA-CAATA-CTATTC-AAATTGTG-TAG-AATACTTCAA-A-CA-AAA-ACAA-ACCAGTA-CTGC-----A-TGGGT-CACAACC--ATGGAACCATGGCATGCAGTGcaagac
gi|14 : tGTTTAAATTT-TTAATTTTTTTTTTTTTTTTTTTTTAAATCTCTATTACAGAGAG---GT----------AC-ATGTAC--------A-TG--CAGGT--TGAAG--------AA------ATCAA---TGA---TGATATCATcagtgcaaaactggtagacaaatcaaattaatatt
gi|15 : tgacaagcgcagaatgatgacatattttagtgaaattcGATAACCTGTTTTGGTTTTCCAAG-TGAAAAAACAAAAGATGTCAAAAAGTTAACCCCGAA
gi|16 : G---AAG-TCTCTTC-TTTCGATA--A-TAG-AGTTAA--TCCCCGTT---ATTCCCCGTTGTGgcaaataatattgt
gi|2 : tTGTG-AGCTTTTA-G--T-AACTAGG---G-A-CG----T-GCGA---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-N-------NNNN-N-----N--NNNNN--------NN--NNNNNNN---NNN-----------N------GAC---AGAAAAT-------GGG-ACGCG---CA------AAGA--CGA-CAAG-A---G-ATTGAACAGATTGAGA--GC-G-AT-TT-GCCT-CC-CGCAA--ACG--AAC-A-ATT----GT-AC--AAAAAA-C-CGA--GTTA--TGCG---GG----CC-CAG--A---CACA--GA-G-GT-GA-AT-----AT--CGGA---C----T-A--------T-CTG-T--TAGAAAAAA-TCGG-TAAG-AAA-GTCGTTTTGATAAT-ATC-GGCAGG-TTAT-TCATA--CGGTCTATCTCAG----G-GA-CTCAAAAT-AC-TATC-C-----CTAG-TAA--AGTAG----------A-A-TAGAT-CCC-GACA---ATGT-GCAGAA-TGTATG--T-AGCCATCAT-AAAAC-TGTTGTGGTAGAA-TTCTATATAGTACACAAGGAATCA-GTGGTATCAAC-CA-TCAAGATGTG-TGG---GAG-CGA-TTGGATCCATTGTTA---TATGTTT---TTGTG---AAG-TCTCTTC-TTTCGAT---C-TAG-CATTAATTTCCCCG-T---ATTCCCCGTTTTGAAATGAAAAAGTAGAC------------------------ACAAGATTGCTCGA--------AGGA------AACTTATC---GT-A--A-TGT-ATGTTGGAGAGC-AAGTT----ACGATATA-TTTAGT---G--AA-TA----A----TTGGG-CAAG---TTGA-T--AAACACAACAG-TGATATAAT---------GA---GATTTA--AATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGCTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCACCCCCCCCCCCCTCAAATGTGG-GAGGC-A-TAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA--GAAAGGAAATG---ATGTCTT----TAG-GACGGAAT--GAATTTGGATTCAGTAATACCTAATT-AAATTGTGCTAGCAATACTTCAA-A-CA-AAACACAAGGTCAATA-CTG------A-TAAG--CACAACCATAT-GAACCATGGCATGCAGTGTTCAGATTTGTT-----TTTTTTTTTTTTTTTTCTAAATTTC-ATTACTTGTAA-TTGT----------AC-ATGTAC--------ATTA--CAGGTACTGAAA--------AAAAGATTACCAG---TTA---TGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAA-GCCA-AA------GGGTGTCGAGTACTTCCATTTATGAAGTTTGTGGAACCA-GAGGAAG--GTACCAGC-TAC-AT-GTGAAGGCTTGAGCGGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTT-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGT-GTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTG-TTATATAACATCCTTTATA-AGTCGGTTACAA-TTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTAT-AGTACAGTA-T-AGA-AACCTGTTTTGGTTTTC--AG-TGAAA---------ATG-C-AAATATTA--CCCGAA
gi|3 : GTGTAGCTTTTA-G--T-ACTTAGG---G-A--G----T-GCGA---TTTTCCCGAACT-AACAGACGT---CAACGAAA--ATCA-TTCGGCCG---A-A----CCTCGG---CGTGGTAC-CGGAAC-C-TTTA-C-------ACAA-T-----C--GCCGA--------GG--GTGTGCC---GAA-----------GT-----GAC---AG-AAAT-------GGG-ACGTG---CC------AAGA--CGA-CAAG-----G-ATTGAA--------GAGGGC-G-AT-TT-GCCTGCC-CG-AA--ACGGTAAACA-ATTT---GT-AC----AAA--CGC-A--G-TA--TG-G---AGGTCTCC-AGG--A---T-CA--GA-G-GT-GAGAT-----AT--TG-AGACC---A--A--------T-CTG-T--TCA-AAAAA-TTGG-TAAA-GAAAATAGTTTGAATATA-ATC-GGC-GG-TTA--TTATAG-CGG--T--CTCAG----ATAA-CTCAAAAAT-CACATC-C-----CTAG-TAA--AGTA----------TA-A-TAGATCCCC-GACA---A-GT-GT--AA-TGTATG--T-AG-CATGAT-AAAA--TCGTGT--TAGAA-TTCT-TATAGTA-AC-AGGAATCA-GTGGTATCAACGCA-TCAAGATGTG-TTG---AGGCCGA-TT-GATCCAA-GTTA---T--GTTG---TTGAGTCTAAA-T-TCTTT-TTTCGAT-----TAGACGTT-ATCTCCGCG-T---ATTCCCGTTTGTGAAAT--GAAAGTAGAC------------------------ACAAG-CTGCTCGG--------AGA----------TGATC--TGTAA--A-TGT-ATGTTG--GAGC-AAGTTTTTGA-GATATATTTTAGTGTGG--AATTA----A----TTGTG-CAAG---TTGA-TA-AAACACA-CAGGTGATATTAT---------GA---AGTTTAT--ATGAA-AACAAT-TT--TCTT--CG-TTGAGCTATCTTGGTGCCCCCCCCCC-CC
gi|3 : aatgaCCCCCCCCCCCTTCAAATGTGG-GAGGC-ACTAG--TGGTCATCTCATACAACTGTA-TGTTTAGTCC-AGATAGGAAATAAGGAAAGGAAAT-----TGTCTT----TAG-GA-TGAAT--GA-TTTGA--TCA-TAATACT--ATT-AAATTGTGT--G-AATACTTCAACA-CATAAA-ACAAG-TCAATA-CTGCCATATA-TAGGTACA-AACCATATGGAACTATGGCATGC-GTGTT-AGATTT-TT-----TT--------------AAAAAATTC-ATTACTGGTAAATTGT----------ACCATGTAC--------A-TA--CAGGTA----GA--------AAAAGATTACCAG---TTA---TGA-ATCATGCATTTTTTC--TTTTAACAAATATACACAAT-AACATTTAACATA-T-TTAATCCATAGATTGAAGGCCA-GATCGAAGGGGTGT--GGTACTTCAAGTTTTGAAGTT-GTGGGACCATGAGGAGATTGTACCAGCCTACCATCGTGAAGGCTTTGGATGAACAGATAGTTGGAGAATTCGTGGAACTTGTT-TTCTGTC-C-GAGGGTA-TGT-GGGGTCTGGCCAGAAGTGTGGTCTCCCT--CTTCAGTTCA-TGCATGCAACCACAATTCAA--CATACAGTCCTTTCTGTCAATTTAAAGGTATTTTTTATTTTGTTTATAT-ACATCCC-TATATAGTCG--TACAATTTGTTGCAAGAGCCATTTGCTGG--ATAAAAAGATATCTCA-TTGACCAAGTGGT-TTTTTTTATGAGTAttcaaatgtgggaggcactagtggtcatctcatacaactgtatgtttagtccagataggaaataaggaaaggaaattgtctttaggatgaatgatttgatcataatactattaaattgtgtgaatacttcaacacataaaacaagtcaatactgccatatataggtacaaaccatatggaactatggcatgcgtgttagatttttttaaaaaattcattactggtaaattgtaccatgtacatacaggtagaaaaagattaccagttatgaatcatgcattttttcttttaacaaatatacacaataacatttaacatatttaatccatagattgaaggccagatcgaaggggtgtggtacttcaagttttgaagttgtgggaccatgaggagattgtaccagcctaccatcgtgaaggctttggatgaacagatagttggagaattcgtggaacttgttttctgtccgagggtatgtggggtctggccagaagtgtggtctccctcttcagttcatgcatgcaaccacaattcaacatacagtcctttctgtcaatttaaaggtattttttattttgtttatatacatccctatatagtcgtacaatttgttgcaagagccatttgctggataaaaagatatctcattgaccaagtggttttttttatgagta
gi|4 : aatgagtgtagcttttagtacttagggagtgcgattttcccgaactaacagacgtcaacgaaaatcattcggccgaacctcggcgtggtaccggaacctttacacaatcgccgagggtgtgccgaagtgacagaaatgggacgtgccaagacgacaaggattgaagagggcgatttgcctgcccgaaacggtaaacaatttgtacaaacgcagtatggaggtctccaggatcagaggtgagatattgagaccaatctgttcaaaaaattggtaaagaaaatagtttgaatataatcggcggttattatagcggtctcagataactcaaaaatcacatccctagtaaagtataatagatccccgacaagtgtaatgtatgtagcatgataaaatcgtgttagaattcttatagtaacaggaatcagtggtatcaacgcatcaagatgtgttgaggccgattgatccaagttatgttgttgagtctaaattcttttttcgattagacgttatctccgcgtattcccgtttgtgaaatgaaagtagacacaagctgctcggagatgatctgtaaatgtatgttggagcaagtttttgagatatattttagtgtggaattaattgtgcaagttgataaaacacacaggtgatattatgaagtttatatgaaaacaattttcttcgttgagctatcttggtgcT--CTCAG----G-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG----------A-A-TAGAT-CCC-GACA---ATGT-GCAGAA-TGTATG--T-AGCCATCAT-AAAAC-TGTTGTGGTAGAA-TTCTATATAGTACACAAGGAATCA-GTGGTATCAAC-CA-TCAAGATGTG-TGG---GAG-CGA-TTGGATCCATTGTTA---TATGTTT---TTGTG---AAG-TCTCTTC-TTTCGAT---C-TAG-CATTAATTTCCCCG-T---ATTCCCCGTTTTGAAATGAAAAAGTAGAC------------------------ACAAGATTGCTCGA--------AGGA------AACTTATC---GT-A--A-TGT-ATGTTGGAGAGC-AAGTT----ACGATATA-TTTAGT---G--AA-TA----A----TTGGG-CAAG---TTGA-T--AAACACAACAG-TGATATAAT---------GA---GATTTA--AATGAC-AACAA--TT--TCTT--CG-TTGAGCTATCTTGCTGCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCACCCCCCCCCCCCTCAAATGTGG-GAGGC-A-TAG--TGGTCATCTCATACACTTGTACTGTTTAGTCCCAGATAGGAA-TA--GAAAGGAAATG---ATGTCTT----TAG-GACGGAAT--GAATTTGGATTCAGTAATACCTAATT-AAATTGTGCTAGCAATACTTCAA-A-CA-AAACACAAGGTCAATA-CTG------A-TAAG--CACAACCATAT-GAACCATGGCATGCAGTGTTCAGATTTGTT-----TTTTTTTTTTTTTTTTCTAAATTTC-ATTACTTGTAA-TTGT----------AC-ATGTAC--------ATTA--CAGGTACTGAAA--------AAAAGATTACCAG---TTA---TGATATCATGCATTTTTTC--TTT--ACAAATATACACAAA-AACATTTAAAATAATGTTAATCCATAGAT-GAA-GCCA-AA------GGGTGTCGAGTACTTCCATTTATGAAGTTTGTGGAACCA-GAGGAAG--GTACCAGC-TAC-AT-GTGAAGGCTTGAGCGGGACAGAGCGTTGGAGAATT--TGGAACTTGTT-TCTCGTT-CTGAG---A-TAT-AGTGTC--GC-AGAAGTGT-GTCTCCCTTCCTTCAGTTCACTGCATGCAACCACAATTCAAACCATACAGT-CTTTCT-TCCATTTAAAGGTA-TTTTTA-TTTG-TTATATAACATCCTTTATA-AGTCGGTTACAA-TTGTTGAGAG-GCCATTTGCTGG--A-ATGAAGATATCTCAGTTGAC--AGT--T-TTTTTTTAT-AGTACAGTA-T-AGA-AACCTGTTTTGGTTTTC--AG-TGAAA---------ATG-C-AAATATTA--CCCGAA
gi|5 : TG-AGCTTTTA-G--T-AACTAGG---GCG-CG----T-GC-A---TTT-CCCGAACT-AACAGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-N-------NNNN-N-----N--NNNNN--------NN--NNNNNNN---NNN-----------NNNNNNNGAC---AGAAAAT-------GGGAACGTG---CAAGAGTCAAGA--CGG-CAA--A---G-ACGGA------------------------GCCT-CCGCGCAA--ACG--AAA-C-TTTT---GTCAC--AAAAA--T-C-AGCGTAA--TG-G---AG----CC-AGG--A---C-CA--GAGG-GT-GG-AT-----GTGGTG-T---C---AT-AGTGAACATT-CTA-T--TC--AAAGA-TTGGTTAAG-AAAAGTTG-TTTGATAAT-ATCTGGCAGG-TTA---TATAG-CGGTC-----AAG----A-GA-CTAAAAA-TACA-ATC-C-----CTAG-TAA----------------TG-A-T---C-CCC-GACA---ATGT-GTA-AA-TGTATG-----ACCATAAT-AAAAATTGTTTTT-GAACA-TTCT--------------GAATTAGGTGGTA-TAAC-CA-TCAAGATGTG-TTG---AAG-CAA-T--------T-GTTC---T--GACT---TCAAG---AAGTTCTCATC-TTTCGAG---CTTAG-TGCTTATTCTCCCG-TGTAATTT----TTGTAA---------------------------------------ACAAAACTGCTCGG---------GGATTGCACAA-GGATC--TGT-A--ATTGT-ATGTTG--GAGC-AG--TTTTGA-GATATATTTTAGT---G--AA-TATGTCAATGTTTGTG-C-AG---TTGATT--TACCACA-CAGGTGATATAATCATCAACTAGATTGAATTCACTAATGAC--ACAAATTT--TCTTACCGTTTGAGCTATCTTTGTGCCCCCCCCCC-CCCCCTTC
gi|5 : attaaggtttgtactggtgtCCCCCCCCCCCCCCCTTCAAATGTGGCGAAGCAACT-GTTTGGTCATCTCATACACTTGTAC-GTTCAGTGCCAGATAGGAA-TA-GGAA--GAAACAAGTATGTCCTTTAATAGAAACTGAATAGAAATTTGTGTTCA-TAATACTAAATC-AAATTGTG--AG-AATACTTCAA-ACCA-AAA-ACAA-GTCAATACCTGC-----ACTGGGT-CAC-ACCATaaatgtggcgaagcaactgtttggtcatctcatacacttgtacgttcagtgccagataggaataggaagaaacaagtatgtcctttaatagaaactgaatagaaatttgtgttcataatactaaatcaaattgtgagaatacttcaaaccaaaaacaagtcaatacctgcactgggtcacaccatggattgctagtgcaagtgcaaaactggtagacaaatcaaattttattgct
gi|6 : attaaggtttgtactggtgttgagcttttagtaactagggcgcgtgcatttcccgaactaacagacgtcagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagaaaatgggaacgtgcaagagtcaagacggcaaagacggagcctccgcgcaaacgaaacttttgtcacaaaaatcagcgtaatggagccaggaccagagggtggatgtggtgtcatagtgaacattctattcaaagattggttaagaaaagttgtttgataatatctggcaggttatatagcggtcaagagactaaaaatacaatccctagtaatgatccccgacaatgtgtaaatgtatgaccataataaaaattgtttttgaacattctgaattaggtggtataaccatcaagatgtgttgaagcaattgttctgacttcaagaagttctcatctttcgagcttagtgcttattctcccgtgtaatttttgtaaacaaaactgctcggggattgcacaaggatctgtaattgtatgttggagcagttttgagatatattttagtgaatatgtcaatgtttgtgcagttgatttaccacacaggtgatataatcatcaactagattgaattcactaatgacacaaattttcttaccgtttgagctatctttgtg-AGCTTTTAAG--T-AACTAGG---G-AGCGGCGTT-GCGAATGTTT-C--------AACCGACAC---TAT-AAAA--ATCACTTCGGGCGCGCACA----CCTCGG---C-TGATA--CGGAAC-CATATAGG-------ACAATT-----C--ATCGACCTTCGATGGGTGTGTGCC---GAGT----------G------GAC---AGAAAATGTC----GGG-ACATG---CA------AAGA--CGG-CAAG-A---G-ATTGAAAG------GA--GC-GCAT-TT-GCCT-CCGCGCAAAGACG--AAC-A-ATTT---GTGACCAAAAAA--C-C-A--G-TG--TG-GGGAAG----CCTAGG--ATTTC-CAAGAA-G-GT-GA-AT-----AT--TG-GC--C---ATAA--------T-CTGTT--TC--AAAAATTTGG-CAAGAAAAAGTCGTGTTGATAAT-ATC-GGCAGG-TTAT-CTATAGACGGT-T--CTCAG----A-GACCTCAAAATTACATATTGC-----CTAG-TAAGTAGTAAGCGAT----TA-A-TAGATCCCC-GACA---ATGT-GTA-AATTGTATG--TAAGCCATGAT-AAAA---AATGTG-TAGAATTTCT-TATAGTA-ACAAG--ATC--GTGGTAGCAAC-CA-TCAAGAT-TG-TTGTTTGAG-CGACTTTGATCCAT-GTTA---T--GTTTGTGTTCA----AAG-TCTCTTC-TTTCGA------TAG-AGTT-AT-------------TTCCCCGTTGTGAAATTTGAAAGTAGAC------------------------ACAAG-CTGCTCGG--------AAGATTGC--AACTTATCTATGT-ATTA-TGTAATGTTTGTGAGCGAAGTTTTGAG-GATATA-GTTAGT---GTAAA-TA----A----TTGTGACAAAGTTTTGA-CTAAAACACA-CAGGTGATATAAT---------GA----ATTTATTAATGAA-AACAA--TTTGTCTT--CG-TTggattgctagtgcaagtgcaaaactggtagacaaatcaaattttattgct
gi|7 : GTG-AGCTTTTA-AGTT-AACTAGG---G---TG----T-GCGA---TTT-CCCGAACT-AA-----------------A--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-N-------NNNN-N-----N--NNNNN--------NN--NNNNNNN---NNN-----------G-------AC---AGAAA-T-------GGG-ACGTG---CC------AAGA--CGG-CAAG-A---G-ATTGAA--------G---GC-G-AT-TT-GCCT-CC-CGCAA--ACG--AAA-A-ATTT---GT-AC--ACAAA--C-C-A--GT-A--TG-G---AG----CC-AGG--A---C-CA--GA-G-GT-GA-AT-----AT--CG-A---C---AT-A--------T--TA-T--TC--AAAAA-TTGG-TAAG-AAAAGTCGTTT-GATAAT-ATT-GGCAGG-TTAT-TTA--G-CGGTCT--C--AC----A-GA-CTCAAAATTACATATC-C-----CTAG-TAA--AGTAG---------TA-A-TAGAT-CCCCGACA---ATGT-G----A-TGTATG--T-AGCCATGATAAAAA--TGTTGT--TAGTA-TTCT-TATAGTA-ACAAGGAATCA-GTGGTACCAAC-CA-TCAAGATGTG-TT----GAG-CGA-TT-GATCCAT-GT-----T--GTTT---TTCAG---A------CTTC-TTTCGAT-----TAG-AGTTA----------------TTCCCGTTGTGAAA-GAGAAAGTAGA
gi|8 : TG-AGCTTTTA----T-AAC---A---G-A-C-----T--CGA---TTT-CC-GAACT-AATTGACGT---CA--GAAA--ANNN-NNNNNNNN---N-N----NNNNNN---NNNNNNNN-NNNNNN-N-NNNN-N-------NNNN-N-----N--NNNNN--------NN--NNNNNN-------------------------GAC---A-AAAAT-------GGA-GCG-------------GAGA----G-CAAGGA---G-ATTGAA--------GA--GCAG-AT-TT-GCT---C-CGCAA--ACG--AAA----TTT---GT-AC--AAAAA--C-C-A--GT-A--TG-G---AG----CC-AGG--A---C-CA--GT-GTGT-----T-----AT--CG-A---C---AT-A--------T-TCAGT--TC--AAACA-TTG--TCAG-AA--GTCGTT---GTAAT-ATT-GGC--G-TTAT-TACTA--CG---T--CTCAGGAGGA-GA-CTCAAAATTACATACC-CTATACCTAG-TAA--AGT-G---------TA-A-TAGAT-CCC-G-CA---ATGTTGTA-AA-TGTATG--T-G--CATGAT-AAAA--TGTTGT--TAGAA-TTTT-TAGAA-----AAGGAATCA-GTGGTACCAAC-CAGTCAAGATGTGTTTT---AAG-C---TTGGATCCTT-GT-----T--GTTT---TTCAG---A------CTTCTTTTCGATTAAC-TAG--GTTA--TTCCC
gi|9 : gtatgagtgtTTA-G--TCAACTAGGCGGA-A-CG----TTGCAACC-TTT-CCCGAACTTAATAGACGTAAACA--GAAATCATC--TTCA-CCG---A-ATCACCCTCGGGCCCATGATACACAGACCAC-TATA-CGTCAGGCAGAA-TGATTCCTGGCCGA--------AGTAGT-TGCCTCCGAGTATGGATCATTG------GATGCGAGAAAATAAGCAGAGGGCACGTAGCACA------AAGAATCGGTC--G-A---GTATTGAAAC------GA--GCCG-ATGTT-GCT---C-CG-AA--ACG--AAA-AGATTTATTGT-AC--AAAAATTC-C-G--AGTACTTG-G---AT----CC-CAGCGA---C-CA--GA-G-GTTGACATTAAGAAT--CG-A---CCATAT-A--------TTCTA-TCTTC--AAAAA-TTGG-TAA