lowQualScore : 111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222 111111111111
lowQualScore : 1111111 44444444 222222222222222222222222222222 111111111 000000000000000 11 111 3333 111111111 11111111 1111111 999999999999999999999999999999999999999999999999999999999999999999999999999 1 1111111 333333333333333333333333333333333 222222222 11 222222222 1 111 22222 2222222222 111111 11111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 44444444444444444 1 1 1 222222222222 4444444444444 111 11111 333333333333 11 1 44444444444444 444444444444444444444444444444444444444444444444444444444 22 111111 3333333333333 33333333333333 222222 444444 3333333333 1111111 1111 9999999999999999999999999999999999999999999999999999999999999 111 11 222222 1 2222 55555555555555555 1111 000000000000 1
lowQualScore : 33 1111111 44444444 33 66 5 7777 444 33 33 1 888888888888888888888888888888 000000000 333333333333333 7777 33 444 00 5 333 5555 44 3 999999 44 555 999 3 3 333 3 999999999 3 44 6666 99999999 888 66 8888888 7 999999999999999999999999999999999999999999999999999999999999999999999999999 1 3 3333333 777777777777777777777777777777777 333 8 000000000 2 2 2 00 33 2 444444444 888888 3 3 5 6666 777 6 55555 555 6666666666 0 999 333333 666 22222 55 3 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 3 1 6 2 22 22222222222222222 0 7 7 3 333333333333 6666666666666 6 3 666 00000 222222222222 44 5 5 0 44444444444444 2 333333333333333333333333333333333333333333333333333333333 3 6 99 33 66 4 4 1 999999 99 0000000000000 7 11111111111111 5 888888 1 888 4 2 555555 2 6 1111111111 6666666 88 4 1 4 0000 9999999999999999999999999999999999999999999999999999999999999 5 000 77 777777 5 77 3 1111 66666666666666666 77 77 2222 7 3 3 99 222222222222 5
lowQualScore : .. ....... ........ .. .. . .... ... .. .. . .............................. ......... ............... .... .. ... .. . ... .... .. . ...... .. ... ... . . ... . ......... . .. .... ........ ... .. ....... . ........................................................................... . . ....... ................................. ... . ......... . . . .. .. . ......... ...... . . . .... ... . ..... ... .......... . ... ...... ... ..... .. . ............................................................................................................... . . . . . .. ................. . . . . ............ ............. . . ... ..... ............ .. . . . .............. . ......................................................... . . .. .. .. . . . ...... .. ............. . .............. . ...... . ... . . ...... . . .......... ....... .. . . . .... ............................................................. . ... .. ...... . .. . .... ................. .. .. .... . . . .. ............ .
lowQualScore : 44 6666666 22222222 44 99 6 8888 444 44 44 2 888888888888888888888888888888 000000000 888888888888888 8888 44 777 00 3 444 8888 66 3 666666 66 888 222 6 6 555 3 222222222 3 66 8888 11111111 999 11 2222222 1 222222222222222222222222222222222222222222222222222222222222222222222222222 3 1 1111111 111111111111111111111111111111111 666 0 111111111 9 5 9 77 99 9 999999999 888888 1 1 2 9999 000 5 88888 444 3333333333 2 222 444444 444 77777 55 9 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 3 7 7 0 00 77777777777777777 7 0 0 5 000000000000 2222222222222 0 8 888 00000 222222222222 66 0 0 0 99999999999999 5 555555555555555555555555555555555555555555555555555555555 5 7 22 66 11 4 0 0 222222 88 2222222222222 0 88888888888888 0 111111 4 888 4 9 888888 7 0 6666666666 9999999 11 4 1 4 4444 2222222222222222222222222222222222222222222222222222222222222 7 000 11 666666 0 99 7 6666 00000000000000000 99 99 1111 6 9 9 22 222222222222 5
consensus : TAAAGGTCATA--T-------GAAACGA---NA-T--T--CCGAAGAAATT----GAGTT---CTG--CA--TGGGA---------------A--------------TT---------CATT-A----GG-TT----GA----ACAAG--A---A--TT-C-TTTGTTAA--T--T-T------TTT--T---TC---AAT-GC-AAGATAAC-G-TCAA-TACAGC-T--G---AT-CAA--AA---GTGCT------CGATC-T-CGAAAATGATTTTCGAT-GATCGC-GGCTGATCTCCCT------TTG----------------CT-GA---------------------TGA---------------------CGTAAAC-AAAA-------CAGTT---TG---T-ATTNAAACAA-ATTA--------TTCA-CTGCATA-G------CTTT-GAAAAATGCCA-CAG-TGTGC--TA-C-ATT-----TAATCGT------AG-TAG-TAGGCCGCAGAAGGTT---GTGAC--TATGTACCTCTTTCCT-G---GGGA---TCCC-A-A-TTTAGAA---GAAAAAAGCTATG---GG-----TNCCAAATCTCCGTA------T-AAGCTAGCC----TA-----GT--GT--------GTACATGT-A-----------NCT------A------CACTCGCGTCCTCATT-AAAAGTAT--AACTTTTATTTTCTTGTTATCGACAATNAAATCCAGCTA-----ATT----A-ATTAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA-T--------ATCATTTAGAAATTATCATTCAGAAAT------AAT-ATAATTAA-CCTA-TAT-TTCNTAT-ACTAT--AAACGCTGAACGTACA-TGTANGT--NT-TA-ATG--TAAACCAG-GGATGGGGGT--GGGGATACATG--TTATGAAAATAAT-ATTTG--ATCG-AT--GAC-ACAAANAACCTACTA------TTAAAAAA-CATATA-----C-----CCCCCC---CCC--------A-TCAAACA-----ACGAT---T-TGTGAACTT-C---AGACATT-------GCGGGCTCGAGAGAAAACACTGACTG-GTTATGAAAAACCGTGCGT-CTGT--GATTATTCGTAT-AAAAAA-A----GG-T---T-----------------------ATTACA------GTTTTT-AGACATA---TTTT-ATTA-----CGATTAATCAT--AAATAGCATGCCACGGT---CAATCTAT--------------A--T--AC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
Reference ( gi|1 ) : TAAAGGTCATA--T-------GAAACG----C--T--T--CGAAAGAAATT----GAGTT---CTG--CA--TGGGA---------------A--------------TT---------CATT---------------GA----ACAAG--A---A--TT-C-TCTGTT----T--T-T------TTT--T---TC---AAT-GC-AAGATAAC-G-TCAA-TACAGC-G--G---AT-CAA--AA---GTGGT------CGATC-T-CGAAAATGATTTTCGAT-GATCGT-GCTTTATTTCCCT------ATG----------------CT-G----------------------TGA---------------------TGTAAAC-AAAA-------CAGTT---TG---T-ATCAAAACAA-ATTA--------TTCA-CTGTATG-G------CTTT-GAAAAATGCCA-CAA-TGTGC--TA-C-TTT-----TAATCGT------AG-TAG-TAGGCCTCAGAAGGTT---GTGAT--TATGTACCTCTTTCCT-C---GGGA---TCAC-A-A-TTTAGAA---GAAAACAGCTGTG---GG-----TACCAAATCTCCGTA------T-A----AGCC----TA-----AT--GT--------GTA-ATGT-A-----------GCT------A------TACTCGCGTCCTCGTTGAAAAGTATGTAACTTTTATTTTCTCGTTATCAACAATGAAATTCAGCTA-----ATC----A-ATCAATTTTGTAATTAAACGTTTCATTCTGAGA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAAT------AAT-ATAATGAA-CCTA-TAT-TTCCTAT-ACTAT--ATACACTGAACGTACA-TGTACGT--GTATACATG--TACACCA--GG-TGGGGGT--G----T---TG--TTATGAAAATAAT-ATTTG--ATCAAAT--AAC-ACAAATAACCTACTA------TTAAAAAA-CATAGA-----C-----CCCTCC---CCC--------A-TCAAACA-----ACGAT---T-TGTGAACT--A---AGATACT-------GAAGGCTCGAGAGAACACACCAACTG-ATTATGAAGAACCGTGCGT-CTGT--AGTTATTCG-----------------------T-----------------------ATTACC------G-TTTT-AGACATA---TTTG-ATTT-----CGATTAATGAT--AAATGACATGCCACGGT---AAATC--T--------------A--T--AC----TTATAAGTTCGTGAATATGCCTA--ATACGGC--------CGGCAATTCACGGGTTTT
gi|4 : TAAAGGTCTAA--T-------GAAACAAATCC--T--T--TGCGA---ATT----CA------CTAATCA--AGG--------------------------------TT---------TATT---------------GA----ACAAG--G---A--TT-CCTTTGTTA---T--T-T------TTT--TCTCTC---AAT-GC-AAGACAAC-G-TCAA-CATAGC-T--G---CT-CAA--AA---GTGTT------CGATC-T-CAAAAATGATTTTCGAT-GGTCGC-GGCTGATCTCTCT------TTG----------------CT-GATGACGTCAAAACGACCCACAATGA---------------------TGTAAAC-AAAA-------CAGTT---TG---T-ATTAA--TAA-ATTA--------TTCA-CTGCATA-A------CTTT-GAAAAATACCA-CAG-TGTTCTATA-C-ATT-----TAATCGT------AA-GAG-TAGGCCACAAAAAGTT---TTGTC--TATGTACCTTTTTCGT-G---GGGA---TCCC-ACA-TTTAGAA---CAAACAAGCTATG---CG-----TTTAAAATCTCCGTA------T-AAGCTAGCC----TA-----GTAGGC--------CTACATGT-T-----------CCT------ACACTCGTACTCGCGTCCTCA------------------TTATTTTCTTGTTATCGACAATAAAATTAATTTA-----ATT----AGATTAATATTGTAAATAAACATTTCATTC
gi|7 : tTAAAGGTCATA--T-------GAAACA----AA-T--C--CCGAAGAAATT----GAGTT---CTG--CA--TGGGA---------------A--------------TT---------CATTAATCAAGGTTTATT-GA----ACAAG--A---A--TTTC-TTTGTTAATTT--T-T------TTC--T---TC-----TCGC-AAGACAAC-A-TCAA-TACAGC-T--G---AT-CAA--AA---GTGCT------CGATC-T-CGAAAATGATTTTCGAT-GATCGC-GGCTGATCTCCCT------TTG----------------CT-GA---------------------TGA---------------------CGT---C-AAAA-------CGGCCCACTG---TGATGTAAAC---------------------TGCATG-GGCCTAGCTTT-GAATAATACAA-CAG-TGTGC--TA-CATTTACATGTAATCGT------AG-TAG-TAGGCCGCAGAAGGTT---TTGAC--TATGCACCTTTATCCT-G---GGGA---TCCC-A-A------AA---GAAAAAAGCTATG---GG-----TTTCTAATCTCCGTA------T-AAGCTAGCC----GA-----GT--GT--------GTACATGT-ACATGTCTCTACACTC-----A------TACTCGCGTCCTCATT
gi|2 : AAAGGTCATA--TAA-----GAAACA----AA-T--C--CCAAAGAAATT----TAGTT---CTG--AAATTGCAA---------------A--------------TT---------CATTAAATCAAGGTTTATTGA----ACAAG--A---AATTC-C-TTTGTC----TAAT-T------TTT--T---TCTCAAAT-GC-AAGATACC-GGTCAA-TGCAGC-T--A---AT-CAAGAAA---GTGCT------CGATT-T-CGAAAATGATTTTCGAT-GATCGC-GGCGAATCTCTTT-------TG----------------CT-GACAAA-----------------TGACGTCCAAAAGACCCACAGTAATGTAAAA-AAAAAAAAAACCAGTA---AGAGGT-ATTTAA-CAA-ATTATTTCATTATTCA-CTGCATA-G------CTTT-GAAAAATGC---CAG-TTTGC--TA-C-ATT-----TAATCGT------AG-TAG-TAGGCCGAAGAAGGTT---TTGAC--TAAGTACCTGTTTCCT-G---GGGA---TCCC--------AGAA---GAAAAAGGCTAT-----A-----TAGTAGAGGTC--TA------T-AAGCTAGCC----TA-----AC--AT--------GTCTCTGT-AC----------ACTC-----G------TGCTCGCGTCCTCAT-------TATG-----------TTCTTGTTATCGACAATCAGATCCAGCTA-----ATTA---A-ATTAATATTGTAAATAAACCTTTCAATCCGACA-TT------AAAAA----------A--ATTTGTGAAGTATCATTTAGAAAT------atttt
gi|11 : AAAGGTCATA--T-------GAAAC-----CAAC--C--CGAA-GAAATT----GAGTT---CC---CA--TGCGA---------------A--------------TT---------CATTAATCAAGGTTTAATTGA----ACAAA--A---T--TC-C-TTTGTTAAT-T--C-T------TTT--C---TC---AAT-GC-AAGATAACTG-TCAA-TACAGCTG--A---AT-CAA--AA----TGCT-------GATC-T-CGAAAATGATTT-CGATTGAT-GC-GGCTGATCTACCT------TTG----------------CT-GATGACGTCAAAACGACCCACAGTGA---------------------TGTAAACCAAAA-------CAGTT---TG---T-ATTAAA-CAA-ATTA--------TTCAGCTGCATAAG------CTTTTGAAAAATGCCAACAAATGTGC--TA-C-ATT-----TAATCGTATTCGTAG-TAG-TAGGCCGCAGAAGTTTTGGGCGA------GTACCT-TGTCCT-----GGGT---TCCA-A-A-TTTGAAG---GAAAAT-GCTATGCATGGT----TTCCAAATCTCCGTt
gi|13 : aAGAGGTCACA--TTTGATAAAAGACA----T--T--T--TGAGA---ATT----GAGTT---ATT--CA--TAGGA---------------A--------------TT---------CATTTATTTTAAGTTATC-AA----ACAAAGCA---A--TT-C-ATTGTT----T--TAT------TTT--T---TC---AA---A-AATATAAC---TCAATTACCAC----G---AT-CCA--AATGTATGG--------GATC-TATGAAAATGA--TTCGGT-CGTCGCAGATATATAATCTT------TTG----------------CTGG----------------------TGC---------------------CGT-TTC-AAAA--------AGAT---T-------TC-CAACAGTCTTG--------TT----TGCATA-G------CTTT-GGAAAATGAGA-CCT-TGTG----------------TGATTGT------AGATCGCCAGAC--CA------T---GTGA---TAT-------TTCCCA-A---GGGATTTTC-C-A-A-TCTAGAAG--GAAAACA--TACG---GG-----TA-CAAATC
gi|6 : tgAAGGTCATA--T-------GAAACGA---T--T--T--CCGAAGAAATT----AAGTT---CTG--CA--TCAAG---------------G--------------TT---------TATT---------------GA----ACAAG--A---A--TT-CCTTTGTTAAT-T--T-T------TTT--T---TC---AAT-GC-AAGATAAT-A-TCAG-TACAGC-T--G---AT-CAA--AA---GTGCT------CGATC-T-CGAAAATGATTTACAAT-GATTGC-GGCTGATCTCCCTTTGCTGATGACATCAAAACGGCCCACT-G----------------------TGA---------------------TGTAAAC-AA---------CAGTT---TG---T-ATTGA--CAA-ATTA--------TTCA-CTGCATA-T------CTTT-GAAAAATGC-A--AG-TGTGC--TA-C-ATT-----TAATCAC------AG-TAG-TAGGCCGCAGATGGTT---GTGAG--TTTGTACCTCTTT-CT-G---GGGA---TCCCAA-A-TTTAGAA---GGAAAAAGCTATG---GGTAGCCTACCAAATCTCCCTATTTTATT-A----AGGC----TA-----GT--GT--------GTA-ATAT-A-----------GCT------A------CACTTGCGTCCTCATTGAAAGGTATTTAACTTTTTTTTTTT
gi|15 : AAAGTCATA--T-------GAAACGATA-T--T--T--TGGA-GAAATT----TTGTT---TTG--CA--TCGGA---------------A--------------TT---------CATT---------------AA----ATAAG--A---A--TC-A-T-TGTT----T--T-TATCATATTTTAT---TCA--AAT-GC-AAGATAAC-G-TGAA-T----C-G--T----T-CAA--AT---GTACC------CGGTC-A-CGAAAATGATCTTCGAT-GATCt
gi|26 : AAGGTGATA--T-------GAAACG----A--T--TTCCGAAAAAAAAAA---GAATT---ATG--CA--TGGGAATTTTATTTATCAAGA--------------TT---------TATT---------------CA----AGAAG--A---AT-TT-C-TTTGTT----A--A-T------TTT--T---TC---AAT-GC-AAGATAAC-G-TCAG-TACAGC-NTTG---ATATGA--AA--------------CGATT-TCCGAAAccagattacccaactgtttgactctgcttagcttcggtaaattacacattttcctacaactaattgttattataggtcgcagaaggttgcgaccatgtgcgtatttcctagggattccgaatttaaaaagaaacatacgggtaca
gi|38 : AAGGTCATA--T-------GAAACGA---T--T--T--CCAAAGAAATT----GAGTT---CTG--CA--TGGGA---------------A--------------TT---------CTTT---------------TA----TCAAG--A---T--TT-
gi|37 : AAGGTCATAAAT-------GAAACGA---T--T--T--CCGAAGAAATT----GAGTT---ACG--CA--TGGGA---------------A--------------TTAATTTATCACATT---------------TACTACACAAG--A---A--TT-C-attgaacaaaa
gi|36 : AAGGTAATA--T-------GAAACG----A--TATT--CTGAAGAAGCC----GAGTTAATTTG-------GGGA---------------A--------------TT---------CATT---------------AA----TCAAG--ca
gi|21 : ttGGTCATA--T-------GAAACGA---T--T--T--CCGAAGAAATT----GAGTT---ATG--CA--TGGAA---------------T--------------TT---------CATTTATAAAGATTTAT--GAT---ACAAG--A---A--TT-CATTTGAA----T--T-T------TTT--T---T----AAT-GC-GAGA-AAC-G-T---------C-G--G-----------AA---ATGAT------C------------------TTCGGT-GATCGC-GTCTTATCTCCCA------TTG----------------CT-GA---------------------TGA---------------------CGTCAAA-AAGA-------Cttgtgctacacaaaagttcatt
gi|28 : GGTCATA--T-------GAAACA----AA-T--C--CCAAAGAAATT----TAGTT---CTG--CA--TGCCA---------------A--------------TT---------CATTAATCAAGGTTTATT-GA----ACAAG--A---AATTC-C-TTCGTTAA--T--T-T------TTT--C---TC---CAT-GCCAAGATAAC-G-TCAA-TACccacatgtgctgcattaatcgtagtagtagg
gi|5 : GTCATA--T-------GAAACA----AA-T--T--CCGAAGAAATT----GAGTC---CTG--CA--TGCCA---------------G--------------TT---------CATTAATCAAGGCTTATT-GA----ACAAG--A---A--TT-CCTTTGTTAAT-T--T-T------TTT--C---TC---AAT-GC----------G-TCAA-TACAAC-T--G---AT-GAA--AA---GTGCT------CGATT-T-CCAAAATGATTTTCGAG-GGTCGC-GGCTGATCTCCCT------TTG----------------CT-GA---------------------TGA---------------------CGT---C-AAAA-------CGACC------------CACTACAA-TTTA---------------------G------CTTT-GAAAAATGCCA-CAG-TGTGC--TA-C-ATT-----TAATTGT------AG-TAG-TAGGTCGCAGAAGGTT---TTGACTATATGTACCTCTTTCCT-G---GGGA---TC-C-A-A------AA---G-CTACA----TG---GG-----TTTCAAATATCCGTATT----T-A----AA-C----TA-----A-------------GTACATGT-C-----------TCT------A------CACTC------------------AT---AC--TCATTTTCTTGCTATTGACAATCAAATCAAGCTA-----ATTA---A-ATCAATATTGTAAATA----TTGTAT------A-TT------AAAAAGT--------ATCATTCAGAAAT-----------AAT------AAT--TAATCAGTCTTA-TAT-TTTCT
gi|12 : GTCACA--T-------GAAACA----AA-T--C--CCGAAGAAATT----TAGTT---CTG--CA--TGCAA---------------ATTTATTAATCAAGGTT---------TATT---------------GG----ACAAG--A---A--TTCC-TTTGTTA---C--T-T------TTT--T---TC---tt
gi|17 : atTA--T-------GAAACG----A--T--TTCCGAAAAAAAAAAAAAGAATT---ATG--CA--TGGAA---------------AT-------------TT---------TATT---------------TA----TCAAG--ATTTA--TT-C-tcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattcactgtatagctttgaaaaatgccatagtgcgctacatttaatcgtagtagtaggccgcagaaggttttgactatgtacctttttcctgcatggggatcccaaattcagaagaaac
gi|16 : TGAC-G-TCAT-CACAAA-G--GGAGAT-CA--------GCCG-------CGATCAT-CGAAAATCATTTTCGA--GATCGaagaagaatttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaaacacttcgtattaacaaattattcactgcattgctttggaaaatgccacaatgtgtaacattt
gi|2 : ct-CAA--AA---GAGATTCGCCGCGATCAT-CGAAAATCATTTTCGA--AATCGA-GCaaacggcccactgtgatgtaaactgcatgggcctagctttgaataatacaacagtgtgctaacatttacatgtaatcgtagtagtaggccgcagaaggttttgactatgcacctttatcctggggatcccaaaagaaaaagctatgggtttctaatctcgtaaagctagccgagtgtgtacatgtctctacactcatactcgcgcctcattattttctttttattct
gi|16 : aaaggtcatataagaaacaaatcccaaagaaatttagttctgaaattgcaaattcattaaatcaaggtttattgaacaagaaattcctttgtctaatttttttctcaaatgcaagataccggtcaatgcagctaatcaagaaagtT------CGATC-T-CGAAAATGATTTTCGAT-GATCGC-GGCTGATCTCCCT------TTG----------------TG-A----------------------TGA---------------------CGT---C-AAAA-------CGGCCCACTG---TGATGTAAAC---------------------TGCATG-GGCCTAGCTTT-GAATAATACAA-CAG-TGTGC--TAACATTTACATGTAATCGT------AG-TAG-TAGGCCGCAGAAGGTT---TTGAC--TATGCACCTTTATCCT-G---GGGA---TCCC-A-A------AA---GAAAA-AGCTATG---GG-----TTTCTAATCT-CGTA------A-AGCT-AGCC----GA-----GT--GT--------GTACATGT-C-----------TCTACACTCA------TACTCGCG-CCTCATTctgacaaatgacgtccaaaagacccacagtaatgtaaaaaaaaaaaaaaccagtaagaggtatttaacaaattatttcattattcactgcatagctttgaaaaatgccagtttgctacatttaatcgtagtagtaggccgaagaaggttttgactaagtacctgtttcctggggatcccagaagaaaaaggctatatagtagaggtctataagctagcctaacatgtctctgtacactcgtgctcgcgtcctcattatgttcttgttatcgacaatcagatccagctaattaaattaatattgtaaataaacctttcaatccgacattaaaaaaatttgtgaagtatcatttagaaatt
gi|7 : c------CGATCAT-CGAAAATCATTTTCGA--GATCGA-GCattttctttttattct
gi|39 : taaaggtcatatgaaacaaatcccgaagaaattgagttctgcatgggaattcattaatcaaggtttattgaacaagaatttctttgttaatttttttcttctcgcaagacaacatcaatacagctgatcaaaagtAGAATGATCTTCGAT-GATCAC-GGTTTATCTCCCT------TTG----------------CT-GA---------------------TGA---------------------CGTCAGA-AAGA-------Ccggctgatctccctttgctgatgacgtcaaaacggcccactgtgatgtaaactgcatgggcctagctttgaataatacaacagtgtgctacatttacatgtaatcgtagtagtaggccgcagaaggttttgactatgcacctttatcctggggatcccaaaagaaaaaagctatgggtttctaatctccgtataagctagccgagtgtgtacatgtacatgtctctacactcatactcgcgtcctcattatttt
gi|23 : atcCCC------AT------------------T-G----------------------TGA---------------------TATAAAC-AAAAA------CAGTT---TG---T-ATTAA--CAA-AGTA--------TTTA-CTGCATA-T------CTTT-GAAAAATGCCA-CAG-TGAGC--TA-C-AGG-----TAATCGT------AG-TAG-TAGGTCGCAGAAGTTT---GTGAC--CATGTACATCTT--CT-CAA-GGGA---TCtcaccgtgatg
gi|32 : atcgcggcttatttccgtttgataaagacgtcaaaaata-G----------------------TGA---------------------TTTAAAC-AAAA-------CAGTT---TG---T-ACCTAAGCA--------------TTCA-CTGCATA-A------CTTT-GAAAAATACCA---G-TGTGC--TG-C-ATT-----TCATTGT------AA-TAG-TAATTCGCAGAAGGTT---GTG
gi|17 : cAC-AAAA-------CACTT---CG---T-ATTAA--CAA-ATTA--------TTCA-CTGCATT-G------CTTT-GGAAAATGCCA-CAA-TGTGT--AA-C-ATT-----T
gi|12 : tatgaaacgatttccgaaaaaaaaaaaaagaattatgcatggaaattttatttatcaagatttattcaagaagaatttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-ATTA--------TTCA-CTGTATA-G------CTTT-GAAAAATGCCA-TAG-TGCGC--TA-C-ATT-----TAATCGT------AG-TAG-TAGGCCGCAGAAGGTT---TTGAC--TATGTACCTTTTTCCTGCATGGGGA---TCCCAA-A-TTCAGAA---GAAA
gi|15 : atgtcacatgaaacaaatcccgaagaaatttagttctgcatgcaaatttattaatcaaggtttattggacaagaattcctttgttactttttttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-CTGCTTA-G------CTTC-GGTAAATTACA-CAT-TTTCC--TA-C-AAC-----TAATTGT------TA-TTA-TAGGTCGCAGAAGGTT---GCGAC--CATGTGCGTATTTCCT-A---GGGA---TTCCGA-A-TTTAAAA---AGAAACA--TACG---GG-----TACc
gi|21 : aaagtcatatgaaacgatattttggagaaattttgttttgcatcggaattcattaaataagaatcattgtttttatcatattttattcaaatgcaagataacgtgaatcgttcaaatgtacccggtcacgaaaatgatcttcgatgatcccagattacccaactgtttgact-CTG-ATG-A------CGTC-AAAAAGACCCA-CA--TGTGC--TG-C-ATT------AATCGT------AG-TAG-TAGGa
gi|14 : ggtcatatgaaacgatttccgaagaaattgagttatgcatggaatttcatttataaagatttatgatacaagaattcatttgaattttttttaatgcgagaaacgtcggaaatgatcttcggtgatcgcgtcttatctcccattgGGTCGTAGAGGGTT---GCGAC--CATGTACCTGGTTCCT-A---GGGA---TCCC-A-AATTCAGAAAAAGAAAAAAAATACG---G------TAC-AAATTTA-GTA------C-A----GGCCGTTCTAGTTTCAT--ATCTATTAAAGTA-ATACGA-----------GCA------A------CACTCACGTCCTC----AAAAG------------GTTTTCTTGTCATCAATAATAAAATCTAGAT------AT-------ATTAATATTGCAAACAAACCTTTCATTCTG-GA-AT------AAAAA----------AAAA---AGAAG-TATCATTCAG-AAT------AAT--------A-CCTA-TAT-TCCACAT-GCT
gi|42 : GTATCTCTTTCCT-A---GGGA---TCCCAA-A-TTTAAAA---GAAAAgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgac
gi|18 : TG---GG-----TACCAAATATCAGTA------TGA----AACC----TA-----AT--AT--------GTA-ATGT-A-----------GAT------A------CACTCATGTCCTCACTGAAAAGTATGGAACTTTTATTTTCTTATTATC-AC--TG---TTC-GTTATCTTTGTCTTTAA-ATCAATATTCTAAATAAACCTTTCATTCTGACATTT------AAAAAATCTAGAAGTATCATTTAGAAATTATCATTCAGAAAT------A---ATAATTCA-CATA-TAG-TCCATAT-ACTATAAAAACACTGAACGTACG-AGT---T--ATCTAGAGG--------G--GG-TGGGGGTGCG----T---TG--Tag
gi|24 : AGAGCAGATATCTTTTATCTTCTCAT-ATCAATAAT-AAATCCAG--------ATC----A-ATTCATATTGTAAAAAATCCTTTCATTCTGAAA-TTCATAGAAGAAA----------ATTAATT--AAAT--TCAT---GAAATGCATTGAATAATAATG-A-CCTATTAT-TCCATATCACTAT---CATACTTAACaa
gi|8 : T-AGAATTAA-CCTA-TAT-TTCATAT-ACT---------CTTAACTTTTA-TGTATGTCAGT---CGTGTTTACACCAG-GG-TGGGG----G----T---TGGAGTAT-AAAATAAT-AGTCG--ATC--AT--GAC-At
gi|10 : cAATTAA-CCTA-TATATTCC-------AT--AAACGCTGAACGTACA-T--AAGT--TT-----T---TAAACCA--GGATGGGGGT--AGGGATACATG--T-ATGAAAATAAT-ATTTG--ATC--AT--GAC-Agcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatataattaacgcaaataacttactattaaaaaaacatacccccccccgcccccaatcaaaacacgatttgggaacttcggacattgtgggctcgaaagaaaacactgactggttatgaaaaccgtgcgtcctgtgaaattattcgtatcaaaatagaaataagattatcattacagtttttagacatattttattacgattaatcataaatagcatgccacggtcaatctatatacttttaagttcgcgagtacg
gi|9 : agAATTAA-CCTA-TATATTCC-------AT--AAACGCTGAACGTACA-T--AAGT--TT-----T---TAAACCA--GGATGGGGGT--AGGGATACATG--T-ATGAAAATAAT-ATTTG--ATC--AT--GAC-Agcgtgaacgttatttaaagaactctcaatataagaattgcctgttatagaaacctactattaaataacatatacccccccctccctaaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
gi|3 : agAA-CCTA-TAT-TTTC----GTCAT--TTCCGCTGAACGTACATTTTACGT--GT-TATA-------ACCAGGGG-TGGAGGT--G----G---TG--GTATG------AT-ATTTG--ATC--AT--GAC-Agcgtgaacgttatttaaagaactctcaatattaagaattgcctgttatagaaacctactattaataacatatacccccccccccctccctaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
gi|3 : ATGTAAAGAATTACCTGCGATAGAATTAAAC-GCAAATACCCTACTAGTACTATTACAAAA-TATATA-----CACCCCCCCTCC---CCA--------A-TCAAACACTTGAACGAT---T-TGTGAACTT-C---AGACATT-------GCGCGCTCGAAAGAAAACACTGACTG-GTTATGAAATACCGTACGT-CTGT--GATTACTCATATCAAAAAGAAATAGGATTAT-T-----------------------ATTACA------GTTTTT-AGACATA---TTTT-ATTA-----TGATTAATCAG--AAATAGCATGCCAAGGT---CAATCTAT--------------A--T--AC----TTGTAAGTTCATGAGTACGCCTAATATACGGC--------gcgggaacgttatctaaagaactaatgtaaagaattacctgcgatagaattaaacgcaaataccctactagtactattacaaaatatatacaccccccctccccaatcaaacacttgaacgatttgtgaacttcagacattgcgcgctcgaaagaaaacactgactggttatgaaataccgtacgtctgtgattactcatatcaaaaagaaataggattattattacagtttttagacatattttattatgattaatcagaaatagcatgccaaggtcaatctatatacttgtaagttcatgagtacgcctaatatacggcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|14 : aacctatattttcgtcatttccgctgaacgtacattttacgtgttataaccaggggtggaggtggtggtatgatatttgatcatgacagcgggaacgttatctaaagaactaGAAAATAAT-ATTTG--TTCATAT--GAC-ttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|8 : ggtcgtagagggttgcgaccatgtacctggttcctagggatcccaaattcagaaaaagaaaaaaaatacggtacaaatttagtacaggccgttctagtttcatatctattaaagtaatacgagcaacactcacgtcctcaaaaggttttcttgtcatcaataataaaatctagatatattaatattgcaaacaaacctttcattctggaataaaaaaaaaagaagtatcattcagaataatacctatattccacatgctgcagtgaatttgtttattgggggaaagAATT--AAC-GCAAATAACTTACTA------TTAAAAAAACATACC-----C-----CCCCCCGCCCCC--------AATCAAAAC-----ACGAT---T-TGGGAACTT-C---GGACATT-------GTGGGCTCGAAAGAAAACACTGACTG-GTTATGAA-AACCGTGCGTCCTGTGAAATTATTCG-----------------------TATCAAAATAGAAATAAGATTATCATTACA------GTTTTT-AGACATA---TTTT-ATTA-----CGATTAATCAT--AAATAGCATGCCACGGT---CAATCTAT--------------A--T--AC----TTTTAAGTTCGCGAGTACG
gi|20 : ctagaattaacctatatttcatatactcttaacttttatgtatgtcagtcgtgtttacaccagggtgggggttggagtataaaataatagtcgatcatgacagcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatatAATT--AACCACAAAAAACATGTAA------T--AAAAA-TATAGAAGA--C-----CCCACC---C------------------A-----A--AT---T-T-------------AGACATT-------TCGGGCGTGCGAAGAAGCAATAAATGGATTATGAAGAACCGTGAGT-TTGT--GGT
gi|22 : attcagaataatacctatattccacatgctgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgacagcgggtacgtaaaataaagacctaagtaaatgcattacctgctgaag--AAC-ACAAAAAACATGTAA------TTAAAA---TATAGAAGGCAC-----CCCACC---ACA--------A-TTAAAC----------T---T-T-------------AGACATC-------TCGGGCGTGCGAAGAAGCAATAAATG-GTTATGAAGAACCGTGAGT-TTGT--GGT
gi|10 : aaacaatatttgatcttatgacagcgggtacgtaaaataaacaactataaagtaaatgcattacctgctgaagaattaAACCTACTA------TTAAATAA-CATATA-----C-----CCCCCC---CTCCCTAA---A-TCAAACA-----ACGAT---T-TGTGAACTT-C---AGATATT-------GCGGGCTCGAAAGAAAACACTGACTG-GTTATGAAAAACCATGGGT-CTGT--GATTATTCGTATAAAAAAATATATTGGATTATT-----------------------ATTACA------GTTTTT-AGACATA---TTTT-ATTA-----CGATTAATCAT--AAATAACATGCCACGGT---CAATCTAT--------------A--T--AC----TTGTACGCTCGTGAGTACGCCAA--ATAC
gi|9 : agaattaacctatatattccataaacgctgaacgtacataagtttttaaaccaggatgggggtagggatacatgtatgaaaataatatttgatcatgacagcgtgaacgttatttaaagaactctcaatataagaattgcctgttatagaAACCTACTA------TTAATAA--CATATA-----C-----CCCCCC---CCCCCTCCCTAA-TCAAACA-----ACGAT---T-TGTGAACTT-C---AGATATT-------GCGGGCTCGAAAGAAAACACTGACTG-GTTATGAAAAACCATGGGT-CTGT--GATTATTCGTATAAAAAAATATATTGGATTATT-----------------------ATTACA------GTTTTT-AGACATA---TTTT-ATTA-----CGATTAATCAT--AAATAACATGCCACGGT---CAATCTAT--------------A--T--AC----TTGTACGCTCGTGAGTACGCCAA--ATAC
gi|30 : agaattaacctatatattccataaacgctgaacgtacataagtttttaaaccaggatgggggtagggatacatgtatgaaaataatatttgatcatgacagcgtgaacgttatttaaagaactctcaatattaagaattgcctgttataga-----C-----CCCCCC---CCC--------A-TCAAACACTTGAACGAT---T-TATGAACTTAATTCAGACATT-------TTGCGCTTGAGTGAAAACGCTTACTG-GTTATGAAATACCGTACGT-CTGT--
gi|19 : cacccCC--------A-CCAAATC-----ATGATAAATATGTAAACC--A---AGACATTAATTGAGGAGGGCTCAAGAAAAAACA--GACTG-ATTATGAAGAACCGTGCTT-CTGT--AACTATTCG-----------------------TTTAAATAAGAAAATACTTATAGGATTACCATTACAG-TTTTAAGACATA---TTTT-ATTA-----TGATTAATCATTAAAATGATATGCTACGGTACCAAATC--TAGTAGATTTGGGCAA--T--ACGTGTTTGTAAGTTCGTGAATATGCCTA--ATACGTCTTCATCATTGGGAA-TCACGGGTTTTgat
gi|31 : -TGTGAACTT-C---AGACATT-------GCGCGCTCGAAGG---------------TTATGAAATACCGTCCGT-CTGT--GATTATTCG-----------------------T-----------------------ATCA
gi|27 : -TTTT-AGACATA---TTTT-ATTA-----CGATTTATCAT--ACGTAGCATGTCACGGT---CAATC--T--------------A--TAAAC----TTGTAAGTTCGTGGGTACGCCTG--ATAAGGCTTCATCGTCGG-AATTCACGGGTTTTaaaagaaatataggattattattacagtttttagacata
gi|34 : tacagt-TTTT-AGACATACATTTTGTATTTTAGTACGATTAATCAT--AAATAGCATGTCACGGT---CAATC--T--------------ATTT--AC----TTGTAAGTTCGTGAGTACGCCTA--ATA
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|25 ): GAATTGCAATAATTAAGCTGTATTAAACAAGAATTTAATTTTAAAATATTTTTTTAAAATGCAAGAAATGATGAAGATGTTACTCGATGCACACAATGGGGTTCGTAACTTATCTCCCTTGCTGATGCGTCCAAAACGAACCACTGTGCTGTAAACAACAAA
Unaligned ( gi|29 ): AAAATAATATTTGATCATATGGCAACTGGGTACGTAAATTTAAGGACTAGAATGAAATGCAAGGAATTTAGAAAATAACATACTATTAAAAATTAGGCAAGACCCCATTCTCCAAA
Unaligned ( gi|33 ): GTCTGTGATTATTCGTATCAAAAAAGAAAAAAGGATAATTATTAGTTTTTAGACATACATGTACAATGCATTTTATTACGATTAATCAGAAATAGCATG
Unaligned ( gi|35 ): CTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAATCCACGAGGTCGACGATGATACGGCTTTTAATCCTTA
Unaligned ( gi|40 ): CTACGGCTCTCACCTTGCTGATGTCGTCAAAACCACCGTGATGTAAACATTTTGAAATTTAACAAAATTA
Unaligned ( gi|41 ): TGTGCATGTTTCTACACTCGTACTCGCGTTCTCATTATTTTCTTGTTAT
Unaligned ( gi|43 ): AATCCACGATATCCGACGATGATACGGCTTTTAATCCTT
Alignments
lowQualScore : 1111111111111111111111111111111111 1111111111111111111111111111111
lowQualScore : 1111 11111 0000000000000000000000000000000000 111111111 2222 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 1111111 111 11111111 111111111 11111 11 111 1 444444444444444444444444 88888888888888888888 11111 22222 4444444444 2222222 1111 1111 666666666666 3333333333 44 111111 1111 3333333333333333333333333333 1111111 1111 222222222 1111111111111111111111111111111 3333333333333 22222222222 1111
lowQualScore : 33 66 33 8888 33 444 33 0 11111 6666666666666666666666666666666666 7777 33 77 111111111 2 888888 2 2222 2 3 3 2 444 44 666 3 3 44 77 3 3 6 0 3 88888 6666 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 4444444 6 777 55555 00000000 2 2 2 33 444 2 2 2 33 33 2 777777 888888 888888 2 2 2 44 5 6666 33 222222222 555 1 3 55 555 11111 22 2 22 2 0 0 333 0 9999 666666666666666666666666 00000000000000000000 0 4 6 77 999 3 22 11111 0 1 55555 6666666666 88 22 7 44 7777777 888 4 4 99999 77 0000 9999 1 333333333333 1 6 8 7777777777 0 11 1 1 0 444444 5 2 1 0000 5555555555555555555555555555 777 4 0 8888 4 3333333 2 4 3 55 0000 111111111 8888888888888888888888888888888 888 777 4 8888888888888 66 5 66 5 33333333333 0000 77 3 3 6 7
lowQualScore : .. .. .. .... .. ... .. . ..... .................................. .... .. .. ......... . ...... . .... . . . . ... .. ... . . .. .. . . . . . ..... .... .................................................................................................................... ....... ....... . ... ..... ........ . . . .. ... . . . .. .. . ...... ...... ...... . . . .. . .... .. ......... ... . . .. ... ..... .. . .. . . . ... . .... ........................ .................... . . . .. ... . .. ..... . . ..... .......... .. .. . .. ....... ... . . ..... .. .... .... . ............ . . . .......... . .. . . . ...... . . . .... ............................ ... . . .... . ....... . . . .. .... ......... ............................... ... ... . ............. .. . .. . ........... .... .. . . . .
lowQualScore : 44 99 44 1111 44 444 44 4 66666 3333333333333333333333333333333333 8888 44 33 555555555 9 666666 9 5555 9 1 1 7 444 66 999 3 3 66 11 3 1 2 5 1 66666 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333 5555555 2 444 22222 44444444 7 7 7 77 777 7 7 7 77 77 7 777777 222222 222222 9 9 5 22 3 1111 99 888888888 444 2 6 00 888 77777 66 5 22 9 9 1 999 2 4444 777777777777777777777777 77777777777777777777 1 0 6 99 666 0 99 99999 7 0 88888 8888888888 33 77 3 22 4444444 999 4 4 11111 44 9999 7777 0 000000000000 5 7 2 8888888888 8 22 0 4 9 444444 0 2 6 6666 0000000000000000000000000000 888 0 8 5555 0 0000000 5 0 6 00 6666 111111111 4444444444444444444444444444444 888 888 0 0000000000000 11 0 99 0 88888888888 6666 99 2 7 7 3
consensus : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----ATT------A------GG-----T---T-----G---A----ACAAG--AA--T-----T-C-TTTGT-TA-A----TT-TTTTTC---T-CAA-TG-CAAGATAAC-G-TCAAT-ACAGC--TGA-T-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGAT-GATCGCGGCTG----ATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-TAAACAA-ATTATT--------CA-C-TG-C--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--TA-CATT------TA------A------TCGTAG-TAG-TAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTA--T--A-CTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANATT-----AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---ATAAT--TAA-CCTA-TATTC-CATAT-ACTAT--AAACGCTGAACGTACAT-T-ANGT-NT-T--AT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGT----AT--------AAAAA-------A-------ATA--T----GGATTATT---AT---TAC-AGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
Reference ( family-1431 ) : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----ATT------A------GG-----T---T-----G---A----ACAAG--AA--T-----T-C-TTTGT-TA-A----TT-TTTTT----T-CAA-TG-CAAGATAAC-G-TCAAT-ACAGC--TGA-T-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGAT-GATCGCGGCTG----ATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-NAAACAA-ATTATT--------CA-C-TG-C--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--TA-CATT------TA------A------TCGTAG-TAG-TAGGCCGCAGAAGGTTGTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TNCCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTA--T--AACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TTAATATTGTAAATAAACCTTTCATTCTGANATT-----AAAAA-T--------ATCATTTAGAAATTATCATTCAGAAATA-AT---ATAAT--TAA-CCTA-TATTT-CNTAT-ACTAT--AAACGCTGAACGTACATGT-ANGT-NT-TA-ATG--TAAACCAGGGATGGGGGTGGGGATACATGTTATGAAAATAATATTTGATC-GATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGT----AT--------AAAAA-------A-------A---------GG----TT---AT---TAC-AGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
gi|1 : TAAAGGTCATA--T--GA--AACGC--TTCGAAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----ATT------------------------------G---A----ACAAG--AA--T-----T-C-TCTGT-T-------TT-TTTTT----T-CAA-TG-CAAGATAAC-G-TCAAT-ACAGC--GGA-T-CAA--AA-GT-GGTCGAT-CT-CGAAAATGATTTTCGAT-GATCGTGCTTT----ATTTCCCTATGCTG-----T---------------------G---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATC-AAAACAA-ATTATT--------CA-C-TG-T--A---T-GGC-TTTGAAAAATGCC-AC-AATGTGC--TA-CTTT------TA------A------TCGTAG-TAG-TAGGCCTCAGAAGGTTGTGAT--TATGTACCTCTTTCC----TCGGGA--TCAC-A-A-TTTAGAA---GAAAACAGC-T--GTG---GG-----TACCAAATCTCCGTA--TA----AGCCTAAT---GTGTA-AT----GTA------G------CT-AT------ACTCGCGTCCTCGTTGAAAAGTATGT--AACTTTTATTTTCTCGTTATCAACAATGAA--ATTC--AGCTAATC-A-A-TCAATTTTGTAATTAAACGTTTCATTCTGAGATT-----AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---ATAAT--GAA-CCTA-TATTT-CCTAT-ACTAT--ATACACTGAACGTACATGT-ACGT-GTATACATG--TACACCAGG--TGGGGGTG----T---TGTTATGAAAATAATATTTGATCAAATAACACAAATAACCTACTA------T-TAAAAAACATAGAC----CCCTCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAAC-T----AA-GATACT-------GAAGGCTCGAGAGAACACACCAACTGA-TTATGAAGAACCGTGCGTC-TGTAG--TTATTCG----------------------------------------------------T---AT---TAC-CG-TTTTAGACATA-------------TTTGATTTCGATTAATGAT--AAATGACATGCCACGGT-A--AATC---T-----------ATAC----TTATAAGTTCGTGAATATGCCTA--ATACGGC--------CGGCAATTCACGGGTTTT
gi|10 : AAT--TAA-CCTA-TAT------AT-TCCAT--AAACGCTGAACGTACA--T-AAGT-TT-T-------TAAACCA-GGATGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|10 : agAGAAACCTACTA------T-TAAATAACATATAC----CCCCCCCT-----CCCTAA---A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGT----AT--------AAAAA-------A-------ATATATT---GGATTATT---AT---TAC-AGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatataagaattgcctgttatagaaacctactattaaataacatatacccccccctccctaaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
gi|11 : agaattaacctatatattccataaacgctgaacgtacataagtttttaaaccaggatgggggtagggatacatgtatgaaaataatatttgatcatgacagcgtgaacgttatttaaagaactctcaatataagaattgcctgttatAAAGGTCATA--T--GA--AACCAA--CCCGAAGAAATTGAG--T---TCC-CA--TGCGAATTC-----ATT------AATCAA-GG-----T---TTAATTG---A----ACAAA--AT--T-----C-C-TTTGT-TA-A----TT-CTTTTC---T-CAA-TG-CAAGATAACTG-TCAAT-ACAGC--TGAAT-CAA--AA--T-GCT-GAT-CT-CGAAAATGATTT-CGATTGAT-GCGGCTG----ATCTACCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------TC--AAAACGACCCACAGTGATGTAAACCAAAA-------CAGT---T---TGT-ATT--AAACAA-ATTATT--------CAGC-TG-C--A---TAAGCTTTTGAAAAATGCCAACAAATGTGC--TA-CATT------TA------ATCGTATTCGTAG-TAG-TAGGCCGCAGAAGTTTTGGGC--GA-GTACCT-TGTCC----TGGG----TTCC-A-A-ATTTGAA---GGAAAATGC-T--ATGCATGGT----TTCCAAATCTCCGT
gi|12 : aGTCACA--T--GA--AAC-AAATCCCGAAGAAATTTAG--T---TCTGCA--TGCAAATTT-----ATTAATCA-A------GGTTTA-T---T-----G---G----ACAAG--AA--T-----TCC-TTTGT-TA-C----TT-TTTTTC---T-CA
gi|12 : at-ATTATT--------CA-C-TG-T--A---T-AGC-TTTGAAAAATGCC-AT-AGTGCGC--TA-CATT------TA------A------TCGTAG-TAG-TAGGCCGCAGAAGGTTTTGAC--TATGTACCTTTTTCCTGCATGGGGA--TCCCAA-A-TTCAGAA---GAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattcactgtatagctttgaaaaatgccatagtgcgctacatttaatcgtagtagtaggccgcagaaggttttgactatgtacctttttcctgcatggggatcccaaattcagaagaaac
gi|13 : atgtcacatgaaacaaatcccgaagaaatttagttctgcatgcaaatttattaatcaaggtttattggacaagaattcctttgttactttttttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGTCACA--TTTGATAAAAGACATTTTGAG--AATTGAG--T---TATTCA--TAGGAATTC-----ATTTATTTTA------AG-----T---T-----ATCAA----ACAAAGCAA--T-----T-C-ATTGT-T-------TTATTTTT----T-CAA----AAATATAAC---TCAATTACCAC---GA-T-CCA--AATGT-ATGGGAT-CTATGAAAATGATT--CGGT-CGTCGCAGATATATAATCT---TTTGCTGG----T---------------------G---------------------CC---------------------G---------------------T---TT----------------------CAAAA--------AGA---T---T-----T-CCAACAGTCTTGTT-------------TG-C--A---T-AGC-TTTGGAAAATGAG-AC-CTTGTG----------------TG------A------TTGTAGATCGCCAGACCA--------TGTGA---TAT-------TTCCC----AAGGGATTTTCC-A-A-TCTAGAA---GGAAAA--CAT--ACG---GG-----TA-CAAATCc
gi|14 : tgGGTCGTAGAGGGTTGCGAC--CATGTACCTGGTTCC----TAGGGA--TCCC-A-AATTCAGAAAAAGAAAAAAAA-T--ACG---G------TAC-AAATTTA-GTA--CAGGCCGTTCTAGTTTCATATCTATTAAAGTA------ATACGAGCA-AC------ACTCACGTCCTCA----AAAG--------------GTTTTCTTGTCATCAATAATAAA--ATCT--AGATA--T-A---TTAATATTGCAAACAAACCTTTCATTCTGGAATA-----AAAAA-A--------A------AAGAAGTATCATTCAGAA----------TAAT----A-CCTA-TATTC-CACAT-GCT
gi|15 : AAAGTCATA--T--GA--AACGATATTTTGGAGAAATTTTG--T---TTTGCA--TCGGAATTC-----ATT------A---------------------------A----ATAAG--AA--TCATTGT-T-TTTAT-CATA----TT-TTATT----C-AAA-TG-CAAGATAAC-G-TGAAT--------CGT-T-CAA--AT-GT-ACCCGGT-CA-CGAAAATGATCTTCGAT-GATCgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgac
gi|15 : -C-TG-C--T---T-AGC-TTCGGTAAATTAC-AC-ATTTTCC--TA-CAAC------TA------A------TTGTTA-TTA-TAGGTCGCAGAAGGTTGCGAC--CATGTGCGTATTTCC----TAGGGA--TTCCGA-A-TTTAAAA---AGAAACA---T--ACG---GG-----TACccagattacccaactgtttgactctgcttagcttcggtaaattacacattttcctacaactaattgttattataggtcgcagaaggttgcgaccatgtgcgtatttcctagggattccgaatttaaaaagaaacatacgggtaca
gi|16 : aaagtcatatgaaacgatattttggagaaattttgttttgcatcggaattcattaaataagaatcattgtttttatcatattttattcaaatgcaagataacgtgaatcgttcaaatgtacccggtcacgaaaatgatcttcgatgatcccagattacccaactgtttgactCTCGAT-CT-CGAAAATGATTTTCGAT-GATCGCGGCTG----ATCTCCCTTTG-TGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGC---CCACTGTGATG-TAAAC-------TG--------CA-T-GGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--TAACATT------TACATGTAA------TCGTAG-TAG-TAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---G-AAAAAGC-T--ATG---GG-----TTTCTAATCT-CGTA---AAGCTAGCCGAGT---GTGTACAT----GTC------T------CT-ACACTCATACTCGCG-CCTCATT-Aa
gi|17 : A---------------------CAAAA-------CACT---T---CGT-ATT---AACAA-ATTATT--------CA-C-TG-C--A---T-TGC-TTTGGAAAATGCC-AC-AATGTGT--AA-CATT------Tttttctttttattct
gi|18 : tatgaaacgatttccgaaaaaaaaaaaaagaattatgcatggaaattttatttatcaagatttattcaagaagaatttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTG---GG-----TACCAAATATCAGTA--TGA---AACCTAAT---ATGTA-AT----GTA------G------AT-AC------ACTCATGTCCTCACTGAAAAGTA--TGGAACTTTTATTTTCTTATTATC-ACTGTTCGTTATCTTTGTCT--TT-A-AATCAATATTCTAAATAAACCTTTCATTCTGACATTTA---AAAAA-TCTAGAAGTATCATTTAGAAATTATCATTCAGAAATA------ATAAT--TCA-CATA-TAGTC-CATAT-ACTATAAAAACACTGAACGTAC-----GAGT-T-----ATC--TAGA--GGGGGTGGGGGTG
gi|19 : C-----C--------A-CCAAATC-----ATGATAAATATGTAAAC------CAAGACATTAATTGAGGAGGGCTCAAGAAAAAACA--GACTGA-TTATGAAGAACCGTGCTTC-TGTAA--CTATTCGTTTAAAT--------AAGAA-------A-------ATACTTATAGGA----TTACCAT---TAC-AGTTTTAAGACATA-------------TTTTATTATGATTAATCATTAAAATGATATGCTACGGTACCAAATCTAGTAGATTTGGGCAATACGTGTTTGTAAGTTCGTGAATATGCCTA--ATACGTCTTCATCATTGGGAA-TCACGGGTTTTcgttgtaa
gi|2 : AAAGGTCATA--TAAGA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGAAATTGCAAATTC-----ATT------AAATCAAGG-----T---TTATT-G---A----ACAAG--AAATT-----C-C-TTTGTCTA-A----TT-TTTTTC---T-CAAATG-CAAGATACC-GGTCAAT-GCAGC--TAA-T-CAAGAAA-GT-GCTCGAT-TT-CGAAAATGATTTTCGAT-GATCGCGGCGA----ATCTCT-TTTGCTGACAAAT---------------------G---------------------ACGTCCAAAAGACCCACAGTAATG---------------------T---AAA---------------------AAAAAAAAAAACCAGT---AAGAGGT-ATT-TAA-CAA-ATTATTTCATTATTCA-C-TG-C--A---T-AGC-TTTGAAAAATGCC-A---GTTTGC--TA-CATT------TA------A------TCGTAG-TAG-TAGGCCGAAGAAGGTTTTGAC--TAAGTACCTGTTTCC----TGGGGA--TCCC-A-------GAA---GAAAAAGGC-T--ATA----------TAGTAGAGGTC--TA--TAAGCTAGCCTAAC---ATGTCTCT----GTAC-----A------CTCGT------GCTCGCGTCCTCA--------------------TTATGTTCTTGTTATCGACAATCAG--ATCC--AGCTAATTAA-A-TTAATATTGTAAATAAACCTTTCAATCCGACATT-----AAAAA----------A--ATTTGTGAAGTATCATTTAGAAAT
gi|20 : CACAAAAAACATGTAA------T---AAAAATATAGAA----GACCCCAC-----C-----------CAAA------------------------TT----TA-GACATT-------TCGGGCGTGCGAAGAAGCAATAAATGGATTATGAAGAACCGTGAGTT-TGTGG--Tt
gi|21 : attcagaataatacctatattccacatgctgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgacagcgggtacgtaaaataaagacctaagtaaatgcattacctgctgaagaattaacGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTGAG--T---TATGCA--TGGAATTTC-----ATTTATAA-A------GA-----TTTAT-----G---AT---ACAAG--AA--T-----T-CATTTG---A-A----TT-TTTTT----T--AA-TG-CGAGA-AAC-G-TCGG----------------AA--A--------TGAT-CT-------------TCGGT-GATCGCGTCTT----ATCTCCCATTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAA---------------------AAAGA-------C
gi|21 : --------CA-T-TG-CTGA---T-GAC-GTCAAAAAGACCC-AC-A-TGTGC--TG-CATT-------A------A------TCGTAG-TAG-TAGGccacatgtgctgcattaatcgtagtagtagg
gi|22 : ggtcatatgaaacgatttccgaagaaattgagttatgcatggaatttcatttataaagatttatgatacaagaattcatttgaattttttttaatgcgagaaacgtcggaaatgatcttcggtgatcgcgtcttatctccACACAAAAAACATGTAA------T-TAAAATATAGAAGG----CACCCCAC-----C--------A--------------CAAT---T----AAACTT----TA-GACATC-------TCGGGCGTGCGAAGAAGCAATAAATGG-TTATGAAGAACCGTGAGTT-TGTGG--T
gi|23 : aaacaatatttgatcttatgacagcgggtacgtaaaataaacaactataaagtaaatgcattacctgctgaagaattaaATCGCGGCTT----ATTTCCGTTTGATAA----A---------------------G---------------------AC---------------------GTCAAAAATACCCATTGTGATAT---AAA---------------------CAAAAA------CAGT---T---TGT-ATT---AACAA-AGTATT--------TA-C-TG-C--A---T-ATC-TTTGAAAAATGCC-AC-AGTGAGC--TA-CAGG------TA------A------TCGTAG-TAG-TAGGTCGCAGAAGTTTGTGAC--CATGTACATCTTCTC----AAGGGA--TC
gi|24 : A--T--ATCTTTTATCTTCTCAT-ATCAATAAT-AA--ATCC--AG---ATC-A-A-TTCATATTGTAAAAAATCCTTTCATTCTGAAATTCATAGAAGAA-A--------ATTAATT--AAAT--TCAT---GAAATGCATTGAATAATAATGA-CCTATTATTC-CATATCACTAT--
gi|25 : agagcag-----T---T-----A---A----ACAAG--AA--T-----T-T-AATTT-TA-AAATATT-TTTTT----A-AAA-TG-CAAGA---------AAT---------GA-T-GAA--GATGTTACTCGATGCA-C-ACAATGG-----GGT---TCGTAACTT----ATCTCCC-TTGCTGA----T---------------------G----------------------C---------------------G---------------------TCCAAAA---------------------CGAAC-------CA-----C---TGT-GCTGTAAACAA-catacttaact
gi|26 : gaattgcaataattaagctgtaAAGGTGATA--T--GA--AACGAT-TTCCGAAAAAAAAAAGAAT---TATGCA--TGGGAATTTTATTTATC------A------AGATTTAT---T-----C---A----AGAAG--AA--T-----TTC-TTTGT-TA-A----TT-TT--T----T-CAA-TG-CAAGATAAC-G-TCAGT-ACAGCNTTGA-TATGA--AA-------CGAT-TTCCGAAAcaaa
gi|27 : ---TAC-AGTTTTTAGACATA-------------TTTTATTACGATTTATCAT--ACGTAGCATGTCACGGT-C--AATCTA-T-----------AAAC----TTGTAAGTTCGTGGGTACGCCTG--ATAAGGCTTCATCGTC-GGAATTCACGGGTTTT
gi|28 : GGTCATA--T--GA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGCA--TGCCAATTC-----ATTAATCA-A------GGTTTA-T---T-----G---A----ACAAG--AAATT-----C-C-TTCGT-TA-A----TT-TTTTC----T-CCA-TGCCAAGATAAC-G-TCAAT-AC
gi|3 : AA-CCTA-TATTTTCGT-----CAT--TTCCGCTGAACGTACATTTTACGT-GT-TA------TAA-CCAGGGGTGGAGGTGG-------TGGTATG------ATATTTGATC--ATGACAGCGGGAACGT--TA------TCTAAAGAAC
gi|3 : ACGCAAATACCCTACTAGTACTAT-TACAAAATATATACACCCCCCCTCCC-----C--------AATCAAACACTTGAACGAT---T-TGTGAACTT----CA-GACATT-------GCGCGCTCGAAAGAAAACACTGACTGG-TTATGAAATACCGTACGTC-TGTGA--TTACTCAT----AT--------CAAAA-------AGAAAT--A---------GGATTATT---AT---TAC-AGTTTTTAGACATA-------------TTTTATTATGATTAATCAG--AAATAGCATGCCAAGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCATGAGTACGCCTAATATACGGCTTCtaatgtaaagaattacctgcgatagaattaaacgcaaataccctactagtactattacaaaatatatacaccccccctccccaatcaaacacttgaacgatttgtgaacttcagacattgcgcgctcgaaagaaaacactgactggttatgaaataccgtacgtctgtgattactcatatcaaaaagaaataggattattattacagtttttagacatattttattatgattaatcagaaatagcatgccaaggtcaatctatatacttgtaagttcatgagtacgcctaatatacggcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|30 : aacctatattttcgtcatttccgctgaacgtacattttacgtgttataaccaggggtggaggtggtggtatgatatttgatcatgacagcgggaacgttatctaaagaactaatgtaaagaattacctgcgatagaattaaC----CCCCCCCC-----C--------A-TCAAACACTTGAACGAT---T-TATGAACTTAATTCA-GACATT-------TTGCGCTTGAGTGAAAACGCTTACTGG-TTATGAAATACCGTACGTC-TGTGA--Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|31 : caccc-TGTGAACTT----CA-GACATT-------GCGCGCTCGAA--------------GG-TTATGAAATACCGTCCGTC-TGTGA--TTATTCGT----AT--------CAAAA-------AGAAATATA---------GGATTATT---AT---TAC-AGTTTTTAGACATA-------------
gi|32 : ----T---------------------G---------------------AT---------------------T---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ACC-TAAGCA------TT--------CA-C-TG-C--A---T-AAC-TTTGAAAAATACC-A---GTGTGC--TG-CATT------TC------A------TTGTAA-TAG-TAATTCGCAGAAGGTTGTG
gi|33 : cgGTC-TGTGA--TTATTCGT----ATCAAAAAAGAAAAA-------A-------G---------GA----TA---AT---TATTAGTTTTTAGACATACATGTACAATGCATTTTATTACGATTAATCAG--AAATAGCATG
gi|34 : C-AGTTTTTAGACATACATTTTGTA----TTTTAGTACGATTAATCAT--AAATAGCATGTCACGGT-C--AATCTA-T-----------TTAC----TTGTAAGTTCGTGAGTACGCCTA--ATA
gi|36 : AAGGTAATA--T--GA--AACGATATTCTGAAGAAGCCGAG--TTAATTTG-----GGGAATTC-----ATT------A------
gi|37 : ttAAGGTCATAAAT--GA--AACGAT-TTCCGAAGAAATTGAG--T---TACGCA--TGGGAATTA-----ATTTATC--A------CA-----T---T-----T---ACTACACAAG--AA--T-----T-C-atcaagttgtgctacacaaaagttcatt
gi|38 : AAGGTCATA--T--GA--AACGAT-TTCCAAAGAAATTGAG--T---TCTGCA--TGGGAATTCTTTT-ATC------A------AGATTTAT---T-----G---A----ACAAA--Aca
gi|39 : AGAATGATCTTCGAT-GATCACGGTTT----ATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAG---------------------AAAGA-------C
gi|4 : atcTAAAGGTCTAA--T--GA--AACAAA--TCC------------------TTTGC------GAATTC-----ACT------AATCAA-GG-----T---TTATT-G---A----ACAAG--GA--T-----T-CCTTTGT-TA------TT-TTTTTCTC-T-CAA-TG-CAAGACAAC-G-TCAAC-ATAGC--TGC-T-CAA--AA-GT-GTTCGAT-CT-CAAAAATGATTTTCGAT-GGTCGCGGCTG----ATCTCTCTTTGCTGA----TGACGTCAAAACGACCCACAATG---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT---AATAA-ATTATT--------CA-C-TG-C--A---T-AAC-TTTGAAAAATACC-AC-AGTGTTCTATA-CATT------TA------A------TCGTAA-GAG-TAGGCCACAAAAAGTTTTGTC--TATGTACCTTTTTCG----TGGGGA--TCCC-ACA-TTTAGAA---CAAACAAGC-T--ATG---CG-----TTTAAAATCTCCGTA--TAAGCTAGCCTAGTAG-GCCTACAT----GTT------C------CT-ACACTCGTACTCGCGTCCTCA--------------------TTATTTTCTTGTTATCGACAATAAA--ATTA--ATTTAATT-AGA-TTAATATTGTAAATAAACATTTCATTCtcaccgtgatg
gi|42 : tGTATCTCTTTCC----TAGGGA--TCCCAA-A-TTTAAAA---GAAAAA
gi|5 : GTCATA--T--GA--AAC-AAATTCCGAAGAAATTGAG--T---CCTGCA--TGCCAGTTC-----ATT------AATCAA-GGCTTA-T---T-----G---A----ACAAG--AA--T-----T-CCTTTGT-TA-A----TT-TTTTTC---T-CAA-TG-C---------G-TCAAT-ACAAC--TGA-T-GAA--AA-GT-GCTCGAT-TT-CCAAAATGATTTTCGAG-GGTCGCGGCTG----ATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CG----------------------------ACC--------CA-C-TA-C--AATTT-AGC-TTTGAAAAATGCC-AC-AGTGTGC--TA-CATT------TA------A------TTGTAG-TAG-TAGGTCGCAGAAGGTTTTGACTATATGTACCTCTTTCC----TGGGGA--TCC-------------------AAAAGC-TACATG---GG-----TTTCAAATATCCGTATTTAAACTAA-----------GTACAT----GTC------T------CT-AC------ACTC------------------A--T--A---CTCATTTTCTTGCTATTGACAATCAA--ATCA--AGCTAATTAA-A-TCAATATTGTAAAT---------ATTGT-ATATT-----AAAAAGT--------ATCATTCAGAAAT-----------AATA-AT----TAAT--CAGTCTTA-TATTT-TCTg
gi|6 : AAGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTAAG--T---TCTGCA--TCAAGGTTT-----ATT------------------------------G---A----ACAAG--AA--T-----T-CCTTTGT-TA-A----TT-TTTTT----TTCAA-TG-CAAGATAAT-A-TCAGT-ACAGC--TGA-T-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTACAAT-GATTGCGGCTG----ATCTCCCTTTGCTGA----T---------------------GACATCAAAACGGCCCACTGTGAT---------------------G---------------------T---AAA---------------------CAA---------CAGT---T---TGT-ATT-GA--CAA-ATTATT--------CA-C-TG-C--A---T-ATC-TTTGAAAAATGC--A--AGTGTGC--TA-CATT------TA------A------TCACAG-TAG-TAGGCCGCAGATGGTTGTGAG--TTTGTACCTCTTT-C----TGGGGA--TCCCAA-A-TTTAGAA---GGAAAAAGC-T--ATG---GGTAGCCTACCAAATCTCCCTATTTTATTAAGGCTAGT---GTGTA-AT----ATA------G------CT-AC------ACTTGCGTCCTCATTGAAAGGTATTT--AACTTTTTTTTTTTTtt
gi|7 : TAAAGGTCATA--T--GA--AAC-AAATCCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----ATT------AATCAA-GG-----T---TTATT-G---A----ACAAG--AA--T-----TTC-TTTGT-TA-A----TT-TTTTTCTTCT-C----G-CAAGACAAC-A-TCAAT-ACAGC--TGA-T-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGAT-GATCGCGGCTG----ATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-TAAAC-------TG--------CA-TGGG-C--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--TA-CATTTACATGTA------A------TCGTAG-TAG-TAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---GAAAAAAGC-T--ATG---GG-----TTTCTAATCTCCGTA--TAAGCTAGCCGAGT---GTGTACAT----GTACATGTCT------CT-ACACTCATACTCGCGTCCTCATT-A
gi|8 : T---AGAAT--TAA-CCTA-TATTT-CATAT-ACT---------CTTAACTTTTATGT-ATGTCAG-TC-GTGTTTACACCAGGG-TGGGGGTTGGAGTAT--------AAAATAATAGTCGATC--ATGACAtttt
gi|8 : cTAACGCAAATAACTTACTA------T-TAAAAAA-ACATAC----CCCCCCCCGCCCCC--------AATCAAAAC-----ACGAT---T-TGGGAACTT----CG-GACATT-------GTGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAA-CCGTGCGTCCTGTGAAATTATTCGT----AT--------CAAAATAGAAATA-------A---------GA----TT---ATCATTAC-AGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTTTAAGTTCGCGAGTACGgcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatataattaacgcaaataacttactattaaaaaaacatacccccccccgcccccaatcaaaacacgatttgggaacttcggacattgtgggctcgaaagaaaacactgactggttatgaaaaccgtgcgtcctgtgaaattattcgtatcaaaatagaaataagattatcattacagtttttagacatattttattacgattaatcataaatagcatgccacggtcaatctatatacttttaagttcgcgagtacg
gi|9 : ctagaattaacctatatttcatatactcttaacttttatgtatgtcagtcgtgtttacaccagggtgggggttggagtataaaataatagtcgatcatgacagcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatataatAAT--TAA-CCTA-TAT------AT-TCCAT--AAACGCTGAACGTACA--T-AAGT-TT-T-------TAAACCA-GGATGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|9 : agAGAAACCTACTA------T-TAATAA-CATATAC----CCCCCCCC-----CCCTCCCTAA-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGT----AT--------AAAAA-------A-------ATATATT---GGATTATT---AT---TAC-AGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatattaagaattgcctgttatagaaacctactattaataacatatacccccccccccctccctaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AAAATAATATTTGATCATATGGCAACTGGGTACGTAAATTTAAGGACTAGAATGAAATGCAAGGAATTTAGAAAATAACATACTATTAAAAATTAGGCAAGACCCCATTCTCCAAA
Unaligned ( gi|35 ): CTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAATCCACGAGGTCGACGATGATACGGCTTTTAATCCTTA
Unaligned ( gi|40 ): CTACGGCTCTCACCTTGCTGATGTCGTCAAAACCACCGTGATGTAAACATTTTGAAATTTAACAAAATTA
Unaligned ( gi|41 ): TGTGCATGTTTCTACACTCGTACTCGCGTTCTCATTATTTTCTTGTTAT
Unaligned ( gi|43 ): AATCCACGATATCCGACGATGATACGGCTTTTAATCCTT
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1111 11111 00000000000000000000000000000 111111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 1111111111111111111 11111111 111111 111111111 11111 11 111 1 444444444444444444444444 777777777777777777 111 111111 5555555555555555555 222222222 111111 11 444444444444444444444 333333 111111 1111 3333333333333333333333333333 1111111 1111 3333 444444444 3333333333333 22222222222 1111
lowQualScore : 33 66 33 8888 33 444 33 0 11111 777777 22222222222222222222222222222 7777 33 77 111111111 2 4444 2 6 3 2 444 3 1 666 3 3 44 77 3 3 6 4 3 6666 2 6666 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 9999999999999999999 55555 00000000 2 5 33 444 2 2 2 33 33 2 555555 888888 1 44 4 6666 33 222222222 555 1 3 55 555 11111 33 2 22 2 0 0 333 0 9999 666666666666666666666666 444444444444444444 0 4 6 77 999 3 22 5 555 0 1 6 999999 4444444444444444444 3 333333333 66 4 4 444444 00 0 77 888888888888888888888 1 6 6 777777 8 0 99 1 1 0 444444 5 2 1 0000 5555555555555555555555555555 777 4 0 8888 4 3333333 2 4 3 55 0000 3333 888 666666666 8888888888888 66 5 66 5 33333333333 0000 77 3 3 6 7
lowQualScore : .. .. .. .... .. ... .. . ..... ...... ............................. .... .. .. ......... . .... . . . . ... . . ... . . .. .. . . . . . .... . .... .................................................................................................................... ....... ................... ..... ........ . . .. ... . . . .. .. . ...... ...... . .. . .... .. ......... ... . . .. ... ..... .. . .. . . . ... . .... ........................ .................. . . . .. ... . .. . ... . . . ...... ................... . ......... .. . . ...... .. . .. ..................... . . . ...... . . .. . . . ...... . . . .... ............................ ... . . .... . ....... . . . .. .... .... ... ......... ............. .. . .. . ........... .... .. . . . .
lowQualScore : 44 99 44 1111 44 444 44 4 66666 222222 44444444444444444444444444444 8888 44 33 555555555 9 8888 9 2 1 7 444 1 5 999 3 3 66 11 3 1 2 2 1 5555 1 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333 4444444444444444444 22222 44444444 7 3 77 777 7 7 7 77 77 7 333333 222222 0 22 6 1111 99 888888888 444 2 6 00 888 77777 44 5 22 9 9 1 999 2 4444 777777777777777777777777 888888888888888888 1 0 6 99 666 0 99 7 111 7 0 7 222222 7777777777777777777 0 888888888 99 4 4 888888 55 9 99 222222222222222222222 5 7 7 444444 0 8 22 0 4 9 444444 0 2 6 6666 0000000000000000000000000000 888 0 8 5555 0 0000000 5 0 6 00 6666 1111 888 444444444 0000000000000 11 0 99 0 88888888888 6666 99 2 7 7 3
consensus : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTAT--AACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-TA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGT----ATCAA-AAAG---AAATA---T-----GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
Reference ( family-1431 ) : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTAT---ACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-TA--NGTNT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGT----AT----AAAA---AAATA---T-----GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
gi|1 : TAAAGGTCATA--T--GA--AACGC--TTCGAAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----------------------------GA----ACAAG--AA--T-----T-C-TCTGT-T------TTTTT-TTTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--GG-AT-CAA--AA-GT-GGTCGAT-CT-CGAAAATGATTTTCGA-TGATCGTGC----TTTATTTCCCTATGCTG-----T---------------------G---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATC-A-AAACAA-ATTATT--------CA-C-TGT--A---T-GGC-TTTGAAAAATGCC-AC-AATGTGC--T-ACTTT------TAA------TCGTAGTAGTAGGCCTCAGAAGGTTGTGAT--TATGTACCTCTTTCC----TCGGGA--TCAC-A-A-TTTAGAA---GAAAACAGC-T--GTG---GG-----TACCAAATCTCCGTA--TA----AGCCTAAT---GTGTA-AT----GTA------G------CT-AT------ACTCGCGTCCTCGTTGAAAAGTATGTAACTTTTATTTTCTCGTTATCAACAATGAA--ATTC--AGCTAATC-A-A-TCAATTTTGTAATTAAACGTTTCATTCTGAGA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--GAA-CCTA-TATTT----CCTAT-ACTAT--ATACACTGAACGTACA--TGTA--CGTGTATACATGTACACCA--GGTGGGGGTG----T---TGTTATGAAAATAATATTTGATCAAATAACACAAATAACCTACTA------T-TAAAAAACATAGAC----CCCTCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAAC-T----AA-GATACT-------GAAGGCTCGAGAGAACACACCAACTGA-TTATGAAGAACCGTGCGTC-TGTAG--TTATTCG---------------------------------------TATTACCG-TTTTAGACATA-------------TTTGATTTCGATTAATGAT--AAATGACATGCCACGGT-A--AATC---T-----------ATAC----TTATAAGTTCGTGAATATGCCTA--ATACGGC--------CGGCAATTCACGGGTTTT
gi|10 : AAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T--A--AGTTT-T-----TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|10 : agAGAAACCTACTA------T-TAAATAACATATAC----CCCCCCCT-----CCCTAA---A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGT----AT----AAAA---AAATATATT-----GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatataagaattgcctgttatagaaacctactattaaataacatatacccccccctccctaaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
gi|11 : agaattaacctatatattccataaacgctgaacgtacataagtttttaaaccaggatgggggtagggatacatgtatgaaaataatatttgatcatgacagcgtgaacgttatttaaagaactctcaatataagaattgcctgttatAAAGGTCATA--T--GA--AACCAA--CCCGAAGAAATTGAG--T---TCC-CA--TGCGAATTC-----A------TT-----AATCAA-GG-----T---TTAATTGA----ACAAA--AT--T-----C-C-TTTGT-TA-A--TTCTTT-TCTCAA-TG-CAAGATAACTG-TCAA-TACAGC--TGAAT-CAA--AA--T-GCT-GAT-CT-CGAAAATGA-TTTCGATTGAT-GCGG----CTGATCTACCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------TC--AAAACGACCCACAGTGATGTAAACCAAAA-------CAGT---T---TGT-A-T-T-AAACAA-ATTATT--------CAGC-TGC--A---TAAGCTTTTGAAAAATGCCAACAAATGTGC--T-ACATT------TAATCGTATTCGTAGTAGTAGGCCGCAGAAGTTTTGGGC--GA-GTACCT-TGTCC----TGGG----TTCC-A-A-ATTTGAA---GGAAAATGC-T--ATGCATGGT----TTCCAAATCTCCGT
gi|12 : aGTCACA--T--GA--AAC-AAATCCCGAAGAAATTTAG--T---TCTGCA--TGCAAATTT-----A------TTAATCAA------GGTTTA-T---T-----GG----ACAAG--AA--T-----TCC-TTTGT-TA-C--TTTTTT-TCTCA
gi|12 : at-ATTATT--------CA-C-TGT--A---T-AGC-TTTGAAAAATGCC-AT-AGTGCGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGTACCTTTTTCCTGCATGGGGA--TCCCAA-A-TTCAGAA---GAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattcactgtatagctttgaaaaatgccatagtgcgctacatttaatcgtagtagtaggccgcagaaggttttgactatgtacctttttcctgcatggggatcccaaattcagaagaaac
gi|13 : atgtcacatgaaacaaatcccgaagaaatttagttctgcatgcaaatttattaatcaaggtttattggacaagaattcctttgttactttttttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGTCACA--TTTGATAAAAGACATTTTGAG--AATTGAG--T---TATTCA--TAGGAATTC-----ATTTATTTT-----A------AG-----T---TATC--AA----ACAAAGCAA--T-----T-C-ATTGT-T-----TTATTT-TTTCAA----AAATATAAC---TCAATTACCAC---G-AT-CCA--AATGT-ATGGGAT-CTATGAAAATGA--TTCGG-TCGTCGCAGATATATAATCT---TTTGCTGG----T---------------------G---------------------CC---------------------G---------------------T----TT---------------------CAAAA--------AG------------ATT-TCCAACAGTCTTGTT-------------TGC--A---T-AGC-TTTGGAAAATGAG-AC-CTTGTG----------------TGA------TT------GTAGATCGC--------CAGAC--CATGTGATATTTCCC----AAGGGATTTTCC-A-A-TCTAGAA---GGAAAA--CAT--ACG---GG-----TA-CAAATCc
gi|14 : tgGGTCGTAGAGGGTTGCGAC--CATGTACCTGGTTCC----TAGGGA--TCCC-A-AATTCAGAAAAAGAAAAAAAA-T--ACG---G------TAC-AAATTTA-GTA--CAGGCCGTTCTAGTTTCATATCTATTAAAGTA------ATACGAGCA-AC------ACTCACGTCCTCA----AAAG------------GTTTTCTTGTCATCAATAATAAA--ATCT--AGATA--T-A---TTAATATTGCAAACAAACCTTTCATTCTGGAA-TA------AAAAA----------A--A---AAGAAGTATCATTCAG-AATA-AT--------------A-CCTA-TATTC----CACAT-GCT
gi|15 : AAAGTCATA--T--GA--AACGATATTTTGGAGAAATTTTG--T---TTTGCA--TCGGAATTC-----A------TT-----A------------------------A----ATAAG--AA--TCATTGT-T-TTTAT-CATA--TTTTAT-TC-AAA-TG-CAAGATAAC-G-TGAA-T-------CG-TT-CAA--AT-GT-ACCCGGT-CA-CGAAAATGATCTTCGA-TGATCgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgac
gi|15 : -C-TGC--T---T-AGC-TTCGGTAAATTAC-AC-ATTTTCC--T-ACAAC------TAA------TTGTTATTATAGGTCGCAGAAGGTTGCGAC--CATGTGCGTATTTCC----TAGGGA--TTCCGA-A-TTTAAAA---AGAAACA---T--ACG---GG-----TACccagattacccaactgtttgactctgcttagcttcggtaaattacacattttcctacaactaattgttattataggtcgcagaaggttgcgaccatgtgcgtatttcctagggattccgaatttaaaaagaaacatacgggtaca
gi|16 : aaagtcatatgaaacgatattttggagaaattttgttttgcatcggaattcattaaataagaatcattgtttttatcatattttattcaaatgcaagataacgtgaatcgttcaaatgtacccggtcacgaaaatgatcttcgatgatcccagattacccaactgtttgactCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTG-TGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--TAACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---G-AAAAAGC-T--ATG---GG-----TTTCTAATCT-CGTA---AAGCTAGCCGAGT---GTGTACAT----GTC------T------CT-ACACTCATACTCGCG-CCTCATT-Aa
gi|17 : A---------------------CAAAA-------CACT---T---CGT-ATT----AACAA-ATTATT--------CA-C-TGC--A---T-TGC-TTTGGAAAATGCC-AC-AATGTGT--A-ACATT------Tttttctttttattct
gi|18 : tatgaaacgatttccgaaaaaaaaaaaaagaattatgcatggaaattttatttatcaagatttattcaagaagaatttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTG---GG-----TACCAAATATCAGTA--TGA---AACCTAAT---ATGTA-AT----GTA------G------AT-AC------ACTCATGTCCTCACTGAAAAGTATGGAACTTTTATTTTCTTATTATC-ACTGTTCGTTATCTTTGTCT--TT-A-AATCAATATTCTAAATAAACCTTTCATTCTGACATTT------AAAAAATCTAGAAGTATCATTTAGAAATTATCATTCAGAAATA------A--TAAT--TCA-CATA-TAGTC----CATAT-ACTATAAAAACACTGAACGTAC----------GAGT-TATC--TAGA--GGGGGTGGGGGTG
gi|19 : C-----C--------A-CCAAATC-----ATGATAAATATGTAAAC------CAAGACATTAATTGAGGAGGGCTCAAGAAAAAACA--GACTGA-TTATGAAGAACCGTGCTTC-TGTAA--CTATTCGTTTAAAT----AAGA---AAATA---CTTATAGGATTACCATTACAGTTTTAAGACATA-------------TTTTATTATGATTAATCATTAAAATGATATGCTACGGTACCAAATCTAGTAGATTTGGGCAATACGTGTTTGTAAGTTCGTGAATATGCCTA--ATACGTCTTCATCATTGGGAA-TCACGGGTTTTcgttgtaa
gi|2 : AAAGGTCATA--TAAGA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGAAATTGCAAATTC-----A------TT-----AAATCAAGG-----T---TTATT-GA----ACAAG--AAATT-----C-C-TTTGTCTA-A--TTTTTT-TCTCAAATG-CAAGATACC-GGTCAA-TGCAGC--TA-AT-CAAGAAA-GT-GCTCGAT-TT-CGAAAATGATTTTCGA-TGATCGCGG----CGAATCTCT-TTTGCTGACAAAT---------------------G---------------------ACGTCCAAAAGACCCACAGTAATG---------------------T---AAA---------------------AAAAAAAAAAACCAGT---AAGAGGT-ATT-T-AA-CAA-ATTATTTCATTATTCA-C-TGC--A---T-AGC-TTTGAAAAATGCC-A---GTTTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGAAGAAGGTTTTGAC--TAAGTACCTGTTTCC----TGGGGA--TCCC-A-------GAA---GAAAAAGGC-T--ATA----------TAGTAGAGGTC--TA--TAAGCTAGCCTAAC---ATGTCTCT----GTA------CA-----CTCGT------GCTCGCGTCCTCATT-A-----------------TGTTCTTGTTATCGACAATCAG--ATCC--AGCTAATT-A-AATTAATATTGTAAATAAACCTTTCAATCCGACA-TT------AAAAA----------A--ATTTGTGAAGTATCATTTAGAAAT
gi|20 : CACAAAAAACATGTAA------T---AAAAATATAGAA----GACCCCAC-----C-----------CAAA------------------------TT----TA-GACATT-------TCGGGCGTGCGAAGAAGCAATAAATGGATTATGAAGAACCGTGAGTT-TGTGG--Tt
gi|21 : attcagaataatacctatattccacatgctgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgacagcgggtacgtaaaataaagacctaagtaaatgcattacctgctgaagaattaacGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTGAG--T---TATGCA--TGGAATTTC-----A------TTTATAAA------GA-----TTTAT-----GAT---ACAAG--AA--T-----T-CATTTG---A-A--TTTTTT---TTAA-TG-CGAGA-AAC-G-TCGG----------------AA--A--------TGAT-CT-------------TCGG-TGATCGCGT----CTTATCTCCCATTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAA---------------------AAAGA-------C
gi|21 : --------CA-T-TGCTGA---T-GAC-GTCAAAAAGACCC-AC-A-TGTGC--T-GCATT-------AA------TCGTAGTAGTAGGccacatgtgctgcattaatcgtagtagtagg
gi|22 : ggtcatatgaaacgatttccgaagaaattgagttatgcatggaatttcatttataaagatttatgatacaagaattcatttgaattttttttaatgcgagaaacgtcggaaatgatcttcggtgatcgcgtcttatctccACACAAAAAACATGTAA------T-TAAAATATAGAAGG----CACCCCAC-----C--------A--------------CAAT---T----AAACTT----TA-GACATC-------TCGGGCGTGCGAAGAAGCAATAAATGG-TTATGAAGAACCGTGAGTT-TGTGG--T
gi|23 : aaacaatatttgatcttatgacagcgggtacgtaaaataaacaactataaagtaaatgcattacctgctgaagaattaaATCGCGG----CTTATTTCCGTTTGATAA----A---------------------G---------------------AC---------------------GTCAAAAATACCCATTGTGATAT---AAA---------------------CAAAAA------CAGT---T---TGT-ATT----AACAA-AGTATT--------TA-C-TGC--A---T-ATC-TTTGAAAAATGCC-AC-AGTGAGC--T-ACAGG------TAA------TCGTAGTAGTAGGTCGCAGAAGTTTGTGAC--CATGTACATCTTCTC----AAGGGA--TC
gi|24 : TAT----CTTTTATCTTCTCAT-ATCAATAAT-AA--ATCC--AG---ATC-A-A-TTCATATTGTAAAAAATCCTTTCATTCTGAAA-TTCATAGAAGAAA----------ATTAATT--AAAT--TCAT---GAAATGCATTGAA--TAATAATGA-CCTATTATTC----CATATCACTAT--
gi|25 : agagcaga-----T---T-----AA----ACAAG--AA--T-----T-T-AATTT-TA-AAATATTTT-TTTAAAATG-CAAGA---------AA-T--------G-AT-GAA--GATGTTACTCGATGCA-C-ACAATGG-----GG-T--TCGTAA----CTTATCTCCC-TTGCTGA----T---------------------G----------------------C---------------------G---------------------TCCAAAA---------------------CGAAC-------CA-----C---TGT-GCTGT-AAACAA-catacttaact
gi|26 : gaattgcaataattaagctgtaAAGGTGATA--T--GA--AACGAT-TTCCGAAAAAAAAAAGAAT---TATGCA--TGGGAATTTTATTTA------TC-----A------AGATTTAT---T-----CA----AGAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT----CAA-TG-CAAGATAAC-G-TCAG-TACAGCNTTG-ATATGA--AA-------CGAT-TTCCGAAAcaaa
gi|27 : TACAGTTTTTAGACATA-------------TTTTATTACGATTTATCAT--ACGTAGCATGTCACGGT-C--AATCTA-T-----------AAAC----TTGTAAGTTCGTGGGTACGCCTG--ATAAGGCTTCATCGTC-GGAATTCACGGGTTTT
gi|28 : GGTCATA--T--GA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGCA--TGCCAATTC-----A------TTAATCAA------GGTTTA-T---T-----GA----ACAAG--AAATT-----C-C-TTCGT-TA-A---TTTTT-TCTCCA-TGCCAAGATAAC-G-TCAA-TAC
gi|3 : AA-CCTA-TATTTTCGTCATTT--C--------CGCTGAACGTACATTT-TA--CGTGT-TAT-----AACCAGGGGTGGAGGTGGTG------G-TATG------ATATTTGATC--ATGACAGCGGGAACGT--TA------TCTAAAGAAC
gi|3 : ACGCAAATACCCTACTAGTACTAT-TACAAAATATATACACCCCCCCTCCC-----C--------AATCAAACACTTGAACGAT---T-TGTGAACTT----CA-GACATT-------GCGCGCTCGAAAGAAAACACTGACTGG-TTATGAAATACCGTACGTC-TGTGA--TTACTCAT----ATCAA-AAAG---AAATA---------GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTATGATTAATCAG--AAATAGCATGCCAAGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCATGAGTACGCCTAATATACGGCTTCtaatgtaaagaattacctgcgatagaattaaacgcaaataccctactagtactattacaaaatatatacaccccccctccccaatcaaacacttgaacgatttgtgaacttcagacattgcgcgctcgaaagaaaacactgactggttatgaaataccgtacgtctgtgattactcatatcaaaaagaaataggattattattacagtttttagacatattttattatgattaatcagaaatagcatgccaaggtcaatctatatacttgtaagttcatgagtacgcctaatatacggcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|30 : aacctatattttcgtcatttccgctgaacgtacattttacgtgttataaccaggggtggaggtggtggtatgatatttgatcatgacagcgggaacgttatctaaagaactaatgtaaagaattacctgcgatagaattaaC----CCCCCCCC-----C--------A-TCAAACACTTGAACGAT---T-TATGAACTTAATTCA-GACATT-------TTGCGCTTGAGTGAAAACGCTTACTGG-TTATGAAATACCGTACGTC-TGTGA--Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|31 : caccc-TGTGAACTT----CA-GACATT-------GCGCGCTCGAA--------------GG-TTATGAAATACCGTCCGTC-TGTGA--TTATTCGT----ATCAA-AAAG---AAATA---TA----GGATTATTATTACAGTTTTTAGACATA-------------
gi|32 : ----T---------------------G---------------------AT---------------------T---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ACC-T-AAGCA------TT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-A---GTGTGC--T-GCATT------TCA------TTGTAATAGTAATTCGCAGAAGGTTGTG
gi|33 : cgGTC-TGTGA--TTATTCGT----ATCAAAAAAG---AAAAA---A-----GGATAATTATTA--GTTTTTAGACATACATGTACAATGCATTTTATTACGATTAATCAG--AAATAGCATG
gi|34 : CAGTTTTTAGACATACATTTTGTA----TTTTAGTACGATTAATCAT--AAATAGCATGTCACGGT-C--AATCTA-T-----------TTAC----TTGTAAGTTCGTGAGTACGCCTA--ATA
gi|36 : AAGGTAATA--T--GA--AACGATATTCTGAAGAAGCCGAG--TTAATTTG-----GGGAATTC-----A------TT-----A------
gi|37 : ttAAGGTCATAAAT--GA--AACGAT-TTCCGAAGAAATTGAG--T---TACGCA--TGGGAATTA-----A------TTTATC-A------CA-----T---T-----TACTACACAAG--AA--T-----T-C-atcaagttgtgctacacaaaagttcatt
gi|38 : AAGGTCATA--T--GA--AACGAT-TTCCAAAGAAATTGAG--T---TCTGCA--TGGGAATTCTTTT-A------TC-----A------AGATTTAT---T-----GA----ACAAA--Aca
gi|39 : AGAATGATCTTCGA-TGATCACGG----TTTATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAG---------------------AAAGA-------C
gi|4 : atcTAAAGGTCTAA--T--GA--AACAAA--TCC------------------TTTGC------GAATTC-----A------CT-----AATCAA-GG-----T---TTATT-GA----ACAAG--GA--T-----T-CCTTTGT-TA-T--TTTTTTCTCTCAA-TG-CAAGACAAC-G-TCAA-CATAGC--TG-CT-CAA--AA-GT-GTTCGAT-CT-CAAAAATGATTTTCGA-TGGTCGCGG----CTGATCTCTCTTTGCTGA----TGACGTCAAAACGACCCACAATG---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT----AATAA-ATTATT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-AC-AGTGTTCTAT-ACATT------TAA------TCGTAAGAGTAGGCCACAAAAAGTTTTGTC--TATGTACCTTTTTCG----TGGGGA--TCCC-ACA-TTTAGAA---CAAACAAGC-T--ATG---CG-----TTTAAAATCTCCGTA--TAAGCTAGCCTAGTAG-GCCTACAT----GTT------C------CT-ACACTCGTACTCGCGTCCTCA------------------TTATTTTCTTGTTATCGACAATAAA--ATTA--ATTTAATT-AGA-TTAATATTGTAAATAAACATTTCATTCtcaccgtgatg
gi|42 : tGTATCTCTTTCC----TAGGGA--TCCCAA-A-TTTAAAA---GAAAAA
gi|5 : GTCATA--T--GA--AAC-AAATTCCGAAGAAATTGAG--T---CCTGCA--TGCCAGTTC-----A------TT-----AATCAA-GGCTTA-T---T-----GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TCTCAA-TG-C---------G-TCAA-TACAAC--TG-AT-GAA--AA-GT-GCTCGAT-TT-CCAAAATGATTTTCGA-GGGTCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CG-----------------------------ACC--------CA-C-TAC--AATTT-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TTGTAGTAGTAGGTCGCAGAAGGTTTTGACTATATGTACCTCTTTCC----TGGGGA--TCC-------------------AAAAGC-TACATG---GG-----TTTCAAATATCCGTATTTAAACTAA-----------GTACAT----GTC------T------CT-AC------ACTC------------------AT---AC--TCATTTTCTTGCTATTGACAATCAA--ATCA--AGCTAATTAA-A-TCAATATTGTAAAT---------ATTGT-ATA-TT------AAAAA----------G------------TATCATTCAGAAATA-AT---AATTAAT--CAGTCTTA-TATTg
gi|6 : AAGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTAAG--T---TCTGCA--TCAAGGTTT-----A------TT-----------------------------GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TTTCAA-TG-CAAGATAAT-A-TCAG-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTACAA-TGATTGCGG----CTGATCTCCCTTTGCTGA----T---------------------GACATCAAAACGGCCCACTGTGAT---------------------G---------------------T---AAA---------------------CAA---------CAGT---T---TGT-ATT----GACAA-ATTATT--------CA-C-TGC--A---T-ATC-TTTGAAAAATGC--A--AGTGTGC--T-ACATT------TAA------TCACAGTAGTAGGCCGCAGATGGTTGTGAG--TTTGTACCTCTTT-C----TGGGGA--TCCCAA-A-TTTAGAA---GGAAAAAGC-T--ATG---GGTAGCCTACCAAATCTCCCTATTTTATTAAGGCTAGT---GTGTA-AT----ATA------G------CT-AC------ACTTGCGTCCTCATTGAAAGGTATTTAACTTTTTTTTTTTTttcttt
gi|7 : TAAAGGTCATA--T--GA--AAC-AAATCCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----AATCAA-GG-----T---TTATT-GA----ACAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT-TCTTCT-CG-CAAGACAAC-A-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--T-ACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---GAAAAAAGC-T--ATG---GG-----TTTCTAATCTCCGTA--TAAGCTAGCCGAGT---GTGTACAT----GTACATGTCT------CT-ACACTCATACTCGCGTCCTCATT-A
gi|8 : T---A--GAAT--TAA-CCTA-TATTT----CATAT-ACTCT--TAACTTTT-ATGTATG--T-CAGTCGTGT---T---TACACCA-GGGTGGGGGTTGGA------G-TAT-AAAATAATAGTCGATC--ATGACAtttt
gi|8 : cTATATAATT--A--ACGCAAATAACTTACTA------T-TAAAAAA-ACATAC----CCCCCCCCGCCCCC--------AATCAAAAC-----ACGAT---T-TGGGAACTT----CG-GACATT-------GTGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAA-CCGTGCGTCCTGTGAAATTATTCGT----ATC---AAAATAGAAATA---------AGATTATCATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTTTAAGTTCGCGAGTACGgcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatataattaacgcaaataacttactattaaaaaaacatacccccccccgcccccaatcaaaacacgatttgggaacttcggacattgtgggctcgaaagaaaacactgactggttatgaaaaccgtgcgtcctgtgaaattattcgtatcaaaatagaaataagattatcattacagtttttagacatattttattacgattaatcataaatagcatgccacggtcaatctatatacttttaagttcgcgagtacg
gi|9 : ctagaattaacctatatttcatatactcttaacttttatgtatgtcagtcgtgtttacaccagggtgggggttggagtataaaataatagtcgatcatgacagcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgcAAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T--A--AGTTT-T-----TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|9 : agAGAAACCTACTA------T-TAATAA-CATATAC----CCCCCCCC-----CCCTCCCTAA-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGT----AT----AAAA---AAATATATT-----GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatattaagaattgcctgttatagaaacctactattaataacatatacccccccccccctccctaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AAAATAATATTTGATCATATGGCAACTGGGTACGTAAATTTAAGGACTAGAATGAAATGCAAGGAATTTAGAAAATAACATACTATTAAAAATTAGGCAAGACCCCATTCTCCAAA
Unaligned ( gi|35 ): CTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAATCCACGAGGTCGACGATGATACGGCTTTTAATCCTTA
Unaligned ( gi|40 ): CTACGGCTCTCACCTTGCTGATGTCGTCAAAACCACCGTGATGTAAACATTTTGAAATTTAACAAAATTA
Unaligned ( gi|41 ): TGTGCATGTTTCTACACTCGTACTCGCGTTCTCATTATTTTCTTGTTAT
Unaligned ( gi|43 ): AATCCACGATATCCGACGATGATACGGCTTTTAATCCTT
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1111 11111 00000000000000000000000000000 111111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 1111111111111111111 11111111 111111 11111111 11111 11 111 1 444444444444444444444444 88888888888888888888 11111 111111 5555555555555555555 222222222 111111 11 22222222222222222222 333333 111111 1111 3333333333333333333333333333 1111111 3333333333 3333333333333 22222222222 1111
lowQualScore : 33 66 33 8888 33 444 33 0 11111 777777 22222222222222222222222222222 7777 33 77 111111111 2 4444 2 6 3 2 444 3 1 666 3 3 44 77 3 3 6 4 3 6666 2 6666 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 9999999999999999999 55555 00000000 2 5 33 444 2 2 2 33 33 2 555555 888888 1 44 4 6666 33 44444444 555 1 3 55 555 11111 33 2 22 2 0 0 333 0 9999 666666666666666666666666 00000000000000000000 0 4 6 77 999 3 22 11111 0 1 6 999999 4444444444444444444 3 333333333 66 4 4 444444 00 0 77 33333333333333333333 1 6 6 777777 8 0 99 1 1 0 444444 5 2 1 0000 5555555555555555555555555555 777 4 0 8888 4 3333333 2 4 3 55 0 7 5 5 5 0 3333333333 8888888888888 66 5 66 5 33333333333 0000 77 3 3 6 7
lowQualScore : .. .. .. .... .. ... .. . ..... ...... ............................. .... .. .. ......... . .... . . . . ... . . ... . . .. .. . . . . . .... . .... .................................................................................................................... ....... ................... ..... ........ . . .. ... . . . .. .. . ...... ...... . .. . .... .. ........ ... . . .. ... ..... .. . .. . . . ... . .... ........................ .................... . . . .. ... . .. ..... . . . ...... ................... . ......... .. . . ...... .. . .. .................... . . . ...... . . .. . . . ...... . . . .... ............................ ... . . .... . ....... . . . .. . . . . . . .......... ............. .. . .. . ........... .... .. . . . .
lowQualScore : 44 99 44 1111 44 444 44 4 66666 222222 44444444444444444444444444444 8888 44 33 555555555 9 8888 9 2 1 7 444 1 5 999 3 3 66 11 3 1 2 2 1 5555 1 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333 4444444444444444444 22222 44444444 7 3 77 777 7 7 7 77 77 7 333333 222222 0 22 6 1111 99 22222222 444 2 6 00 888 77777 44 5 22 9 9 1 999 2 4444 777777777777777777777777 77777777777777777777 1 0 6 99 666 0 99 99999 7 0 7 222222 7777777777777777777 0 888888888 99 4 4 888888 55 9 99 88888888888888888888 5 7 7 444444 0 8 22 0 4 9 444444 0 2 6 6666 0000000000000000000000000000 888 0 8 5555 0 0000000 5 0 6 00 1 6 0 0 0 5 2222222222 0000000000000 11 0 99 0 88888888888 6666 99 2 7 7 3
consensus : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTA--T--A-CTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
Reference ( family-1431 ) : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTA--T--AACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-TA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
gi|1 : TAAAGGTCATA--T--GA--AACGC--TTCGAAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----------------------------GA----ACAAG--AA--T-----T-C-TCTGT-T------TTTTT-TTTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--GG-AT-CAA--AA-GT-GGTCGAT-CT-CGAAAATGATTTTCGA-TGATCGTGC----TTTATTTCCCTATGCTG-----T---------------------G---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATC-A-AAACAA-ATTATT--------CA-C-TGT--A---T-GGC-TTTGAAAAATGCC-AC-AATGTGC--T-ACTTT------TAA------TCGTAGTAGTAGGCCTCAGAAGGTTGTGAT--TATGTACCTCTTTCC----TCGGGA--TCAC-A-A-TTTAGAA---GAAAACAGC-T--GTG---GG-----TACCAAATCTCCGTA--TA----AGCCTAAT---GTGTA-AT----GTA------G------CT-AT------ACTCGCGTCCTCGTTGAAAAGTATGT--AACTTTTATTTTCTCGTTATCAACAATGAA--ATTC--AGCTAATC-A-A-TCAATTTTGTAATTAAACGTTTCATTCTGAGA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--GAA-CCTA-TATTT----CCTAT-ACTAT--ATACACTGAACGTACA--TGTA--CGTGTATACATGTACACCA--GGTGGGGGTG----T---TGTTATGAAAATAATATTTGATCAAATAACACAAATAACCTACTA------T-TAAAAAACATAGAC----CCCTCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAAC-T----AA-GATACT-------GAAGGCTCGAGAGAACACACCAACTGA-TTATGAAGAACCGTGCGTC-TGTAG--TTATTCG---------------------------------TATTACCG-TTTTAGACATA-------------TTTGATTTCGATTAATGAT--AAATGACATGCCACGGT-A--AATC---T-----------ATAC----TTATAAGTTCGTGAATATGCCTA--ATACGGC--------CGGCAATTCACGGGTTTT
gi|10 : AAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|10 : agAGAAACCTACTA------T-TAAATAACATATAC----CCCCCCCT-----CCCTAA---A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatataagaattgcctgttatagaaacctactattaaataacatatacccccccctccctaaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
gi|11 : agaattaacctatatattccataaacgctgaacgtacataagtttttaaaccaggatgggggtagggatacatgtatgaaaataatatttgatcatgacagcgtgaacgttatttaaagaactctcaatataagaattgcctgttatAAAGGTCATA--T--GA--AACCAA--CCCGAAGAAATTGAG--T---TCC-CA--TGCGAATTC-----A------TT-----AATCAA-GG-----T---TTAATTGA----ACAAA--AT--T-----C-C-TTTGT-TA-A--TTCTTT-TCTCAA-TG-CAAGATAACTG-TCAA-TACAGC--TGAAT-CAA--AA--T-GCT-GAT-CT-CGAAAATGA-TTTCGATTGAT-GCGG----CTGATCTACCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------TC--AAAACGACCCACAGTGATGTAAACCAAAA-------CAGT---T---TGT-A-T-T-AAACAA-ATTATT--------CAGC-TGC--A---TAAGCTTTTGAAAAATGCCAACAAATGTGC--T-ACATT------TAATCGTATTCGTAGTAGTAGGCCGCAGAAGTTTTGGGC--GA-GTACCT-TGTCC----TGGG----TTCC-A-A-ATTTGAA---GGAAAATGC-T--ATGCATGGT----TTCCAAATCTCCGT
gi|12 : aGTCACA--T--GA--AAC-AAATCCCGAAGAAATTTAG--T---TCTGCA--TGCAAATTT-----A------TTAATCAA------GGTTTA-T---T-----GG----ACAAG--AA--T-----TCC-TTTGT-TA-C--TTTTTT-TCTCA
gi|12 : at-ATTATT--------CA-C-TGT--A---T-AGC-TTTGAAAAATGCC-AT-AGTGCGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGTACCTTTTTCCTGCATGGGGA--TCCCAA-A-TTCAGAA---GAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattcactgtatagctttgaaaaatgccatagtgcgctacatttaatcgtagtagtaggccgcagaaggttttgactatgtacctttttcctgcatggggatcccaaattcagaagaaac
gi|13 : atgtcacatgaaacaaatcccgaagaaatttagttctgcatgcaaatttattaatcaaggtttattggacaagaattcctttgttactttttttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGTCACA--TTTGATAAAAGACATTTTGAG--AATTGAG--T---TATTCA--TAGGAATTC-----ATTTATTTT-----A------AG-----T---TATC--AA----ACAAAGCAA--T-----T-C-ATTGT-T-----TTATTT-TTTCAA----AAATATAAC---TCAATTACCAC---G-AT-CCA--AATGT-ATGGGAT-CTATGAAAATGA--TTCGG-TCGTCGCAGATATATAATCT---TTTGCTGG----T---------------------G---------------------CC---------------------G---------------------T----TT---------------------CAAAA--------AG------------ATT-TCCAACAGTCTTGTT-------------TGC--A---T-AGC-TTTGGAAAATGAG-AC-CTTGTG----------------TGA------TT------GTAGATCGC--------CAGAC--CATGTGATATTTCCC----AAGGGATTTTCC-A-A-TCTAGAA---GGAAAA--CAT--ACG---GG-----TA-CAAATCc
gi|14 : tgGGTCGTAGAGGGTTGCGAC--CATGTACCTGGTTCC----TAGGGA--TCCC-A-AATTCAGAAAAAGAAAAAAAA-T--ACG---G------TAC-AAATTTA-GTA--CAGGCCGTTCTAGTTTCATATCTATTAAAGTA------ATACGAGCA-AC------ACTCACGTCCTCA----AAAG--------------GTTTTCTTGTCATCAATAATAAA--ATCT--AGATA--T-A---TTAATATTGCAAACAAACCTTTCATTCTGGAA-TA------AAAAA----------A--A---AAGAAGTATCATTCAG-AATA-AT--------------A-CCTA-TATTC----CACAT-GCT
gi|15 : AAAGTCATA--T--GA--AACGATATTTTGGAGAAATTTTG--T---TTTGCA--TCGGAATTC-----A------TT-----A------------------------A----ATAAG--AA--TCATTGT-T-TTTAT-CATA--TTTTAT-TC-AAA-TG-CAAGATAAC-G-TGAA-T-------CG-TT-CAA--AT-GT-ACCCGGT-CA-CGAAAATGATCTTCGA-TGATCgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgac
gi|15 : -C-TGC--T---T-AGC-TTCGGTAAATTAC-AC-ATTTTCC--T-ACAAC------TAA------TTGTTATTATAGGTCGCAGAAGGTTGCGAC--CATGTGCGTATTTCC----TAGGGA--TTCCGA-A-TTTAAAA---AGAAACA---T--ACG---GG-----TACccagattacccaactgtttgactctgcttagcttcggtaaattacacattttcctacaactaattgttattataggtcgcagaaggttgcgaccatgtgcgtatttcctagggattccgaatttaaaaagaaacatacgggtaca
gi|16 : aaagtcatatgaaacgatattttggagaaattttgttttgcatcggaattcattaaataagaatcattgtttttatcatattttattcaaatgcaagataacgtgaatcgttcaaatgtacccggtcacgaaaatgatcttcgatgatcccagattacccaactgtttgactCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTG-TGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--TAACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---G-AAAAAGC-T--ATG---GG-----TTTCTAATCT-CGTA---AAGCTAGCCGAGT---GTGTACAT----GTC------T------CT-ACACTCATACTCGCG-CCTCATT-Aa
gi|17 : A---------------------CAAAA-------CACT---T---CGT-ATT----AACAA-ATTATT--------CA-C-TGC--A---T-TGC-TTTGGAAAATGCC-AC-AATGTGT--A-ACATT------Tttttctttttattct
gi|18 : tatgaaacgatttccgaaaaaaaaaaaaagaattatgcatggaaattttatttatcaagatttattcaagaagaatttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTG---GG-----TACCAAATATCAGTA--TGA---AACCTAAT---ATGTA-AT----GTA------G------AT-AC------ACTCATGTCCTCACTGAAAAGTA--TGGAACTTTTATTTTCTTATTATC-ACTGTTCGTTATCTTTGTCT--TT-A-AATCAATATTCTAAATAAACCTTTCATTCTGACATTT------AAAAAATCTAGAAGTATCATTTAGAAATTATCATTCAGAAATA------A--TAAT--TCA-CATA-TAGTC----CATAT-ACTATAAAAACACTGAACG--------TA--CGAGT-TATC--TAGA--GGGGGTGGGGGTG
gi|19 : C-----C--------A-CCAAATC-----ATGATAAATATGTAAAC------CAAGACATTAATTGAGGAGGGCTCAAGAAAAAACA--GACTGA-TTATGAAGAACCGTGCTTC-TGTAA--CTATTCGT-TTAAATA-A-GAAAATACTTA-TAGGATTACCATTACAGTTTTAAGACATA-------------TTTTATTATGATTAATCATTAAAATGATATGCTACGGTACCAAATCTAGTAGATTTGGGCAATACGTGTTTGTAAGTTCGTGAATATGCCTA--ATACGTCTTCATCATTGGGAA-TCACGGGTTTTcgttgtaa
gi|2 : AAAGGTCATA--TAAGA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGAAATTGCAAATTC-----A------TT-----AAATCAAGG-----T---TTATT-GA----ACAAG--AAATT-----C-C-TTTGTCTA-A--TTTTTT-TCTCAAATG-CAAGATACC-GGTCAA-TGCAGC--TA-AT-CAAGAAA-GT-GCTCGAT-TT-CGAAAATGATTTTCGA-TGATCGCGG----CGAATCTCT-TTTGCTGACAAAT---------------------G---------------------ACGTCCAAAAGACCCACAGTAATG---------------------T---AAA---------------------AAAAAAAAAAACCAGT---AAGAGGT-ATT-T-AA-CAA-ATTATTTCATTATTCA-C-TGC--A---T-AGC-TTTGAAAAATGCC-A---GTTTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGAAGAAGGTTTTGAC--TAAGTACCTGTTTCC----TGGGGA--TCCC--------AGAA---GAAAAAGGC-T--AT-----A-----TAGTAGAGGTC--TA--TAAGCTAGCCTAAC---ATGTCTCT----GTAC-----A------CTCGT------GCTCGCGTCCTCA--------------------TTATGTTCTTGTTATCGACAATCAG--ATCC--AGCTAATTAA-A-TTAATATTGTAAATAAACCTTTCAATCCGACA-TT------AAAAA----------A--ATTTGTGAAGTATCATTTAGAAAT
gi|20 : CACAAAAAACATGTAA------T---AAAAATATAGAA----GACCCCAC-----C-----------CAAA------------------------TT----TA-GACATT-------TCGGGCGTGCGAAGAAGCAATAAATGGATTATGAAGAACCGTGAGTT-TGTGG--Tt
gi|21 : attcagaataatacctatattccacatgctgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgacagcgggtacgtaaaataaagacctaagtaaatgcattacctgctgaagaattaacGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTGAG--T---TATGCA--TGGAATTTC-----A------TTTATAAA------GA-----TTTAT-----GAT---ACAAG--AA--T-----T-CATTTG---A-A--TTTTTT---TTAA-TG-CGAGA-AAC-G-TCGG----------------AA--A--------TGAT-CT-------------TCGG-TGATCGCGT----CTTATCTCCCATTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAA---------------------AAAGA-------C
gi|21 : --------CA-T-TGCTGA---T-GAC-GTCAAAAAGACCC-AC-A-TGTGC--T-GCATT-------AA------TCGTAGTAGTAGGccacatgtgctgcattaatcgtagtagtagg
gi|22 : ggtcatatgaaacgatttccgaagaaattgagttatgcatggaatttcatttataaagatttatgatacaagaattcatttgaattttttttaatgcgagaaacgtcggaaatgatcttcggtgatcgcgtcttatctccACACAAAAAACATGTAA------T-TAAAATATAGAAGG----CACCCCAC-----C--------A--------------CAAT---T----AAACTT----TA-GACATC-------TCGGGCGTGCGAAGAAGCAATAAATGG-TTATGAAGAACCGTGAGTT-TGTGG--T
gi|23 : aaacaatatttgatcttatgacagcgggtacgtaaaataaacaactataaagtaaatgcattacctgctgaagaattaaATCGCGG----CTTATTTCCGTTTGATAA----A---------------------G---------------------AC---------------------GTCAAAAATACCCATTGTGATAT---AAA---------------------CAAAAA------CAGT---T---TGT-ATT----AACAA-AGTATT--------TA-C-TGC--A---T-ATC-TTTGAAAAATGCC-AC-AGTGAGC--T-ACAGG------TAA------TCGTAGTAGTAGGTCGCAGAAGTTTGTGAC--CATGTACATCTTCTC----AAGGGA--TC
gi|24 : A--T--ATCTTTTATCTTCTCAT-ATCAATAAT-AA--ATCC--AG---ATC-A-A-TTCATATTGTAAAAAATCCTTTCATTCTGAAA-TTCATAGAAGAAA----------ATTAATT--AAAT--TCAT---GAAATGCATTGAA--TAATAATGA-CCTATTATTC----CATATCACTAT--
gi|25 : agagcag-----T---T-----AA----ACAAG--AA--T-----T-T-AATTT-TA-AAATATTTT-TTTAAAATG-CAAGA---------AA-T--------G-AT-GAA--GATGTTACTCGATGCA-C-ACAATGG-----GG-T--TCGTAA----CTTATCTCCC-TTGCTGA----T---------------------G----------------------C---------------------G---------------------TCCAAAA---------------------CGAAC-------CA-----C---TGT-GCTGT-AAACAA-catacttaact
gi|26 : gaattgcaataattaagctgtaAAGGTGATA--T--GA--AACGAT-TTCCGAAAAAAAAAAGAAT---TATGCA--TGGGAATTTTATTTA------TC-----A------AGATTTAT---T-----CA----AGAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT----CAA-TG-CAAGATAAC-G-TCAG-TACAGCNTTG-ATATGA--AA-------CGAT-TTCCGAAAcaaa
gi|27 : TACAGTTTTTAGACATA-------------TTTTATTACGATTTATCAT--ACGTAGCATGTCACGGT-C--AATCTA-T-----------AAAC----TTGTAAGTTCGTGGGTACGCCTG--ATAAGGCTTCATCGTC-GGAATTCACGGGTTTT
gi|28 : GGTCATA--T--GA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGCA--TGCCAATTC-----A------TTAATCAA------GGTTTA-T---T-----GA----ACAAG--AAATT-----C-C-TTCGT-TA-A---TTTTT-TCTCCA-TGCCAAGATAAC-G-TCAA-TAC
gi|3 : AA-CCTA-TATTTTCGTCATTT--C--------CGCTGAACGTACATTT-TA--CGTGT-TAT-----AACCAGGGGTGGAGGTGGTG------G-TATG------ATATTTGATC--ATGACAGCGGGAACGT--TA------TCTAAAGAAC
gi|3 : ACGCAAATACCCTACTAGTACTAT-TACAAAATATATACACCCCCCCTCCC-----C--------AATCAAACACTTGAACGAT---T-TGTGAACTT----CA-GACATT-------GCGCGCTCGAAAGAAAACACTGACTGG-TTATGAAATACCGTACGTC-TGTGA--TTACTCATATCAAA-A-A-GAAA-----TA---GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTATGATTAATCAG--AAATAGCATGCCAAGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCATGAGTACGCCTAATATACGGCTTCtaatgtaaagaattacctgcgatagaattaaacgcaaataccctactagtactattacaaaatatatacaccccccctccccaatcaaacacttgaacgatttgtgaacttcagacattgcgcgctcgaaagaaaacactgactggttatgaaataccgtacgtctgtgattactcatatcaaaaagaaataggattattattacagtttttagacatattttattatgattaatcagaaatagcatgccaaggtcaatctatatacttgtaagttcatgagtacgcctaatatacggcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|30 : aacctatattttcgtcatttccgctgaacgtacattttacgtgttataaccaggggtggaggtggtggtatgatatttgatcatgacagcgggaacgttatctaaagaactaatgtaaagaattacctgcgatagaattaaC----CCCCCCCC-----C--------A-TCAAACACTTGAACGAT---T-TATGAACTTAATTCA-GACATT-------TTGCGCTTGAGTGAAAACGCTTACTGG-TTATGAAATACCGTACGTC-TGTGA--Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|31 : caccc-TGTGAACTT----CA-GACATT-------GCGCGCTCGAA--------------GG-TTATGAAATACCGTCCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-TAGGATTATTATTACAGTTTTTAGACATA-------------
gi|32 : ----T---------------------G---------------------AT---------------------T---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ACC-T-AAGCA------TT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-A---GTGTGC--T-GCATT------TCA------TTGTAATAGTAATTCGCAGAAGGTTGTG
gi|33 : cgGTC-TGTGA--TTATTCGTATCAAA-A-AAGAAA-----AA-A-GGATAATTATTA--GTTTTTAGACATACATGTACAATGCATTTTATTACGATTAATCAG--AAATAGCATG
gi|34 : CAGTTTTTAGACATACATTTTGTA----TTTTAGTACGATTAATCAT--AAATAGCATGTCACGGT-C--AATCTA-T-----------TTAC----TTGTAAGTTCGTGAGTACGCCTA--ATA
gi|36 : AAGGTAATA--T--GA--AACGATATTCTGAAGAAGCCGAG--TTAATTTG-----GGGAATTC-----A------TT-----A------
gi|37 : ttAAGGTCATAAAT--GA--AACGAT-TTCCGAAGAAATTGAG--T---TACGCA--TGGGAATTA-----A------TTTATC-A------CA-----T---T-----TACTACACAAG--AA--T-----T-C-atcaagttgtgctacacaaaagttcatt
gi|38 : AAGGTCATA--T--GA--AACGAT-TTCCAAAGAAATTGAG--T---TCTGCA--TGGGAATTCTTTT-A------TC-----A------AGATTTAT---T-----GA----ACAAA--Aca
gi|39 : AGAATGATCTTCGA-TGATCACGG----TTTATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAG---------------------AAAGA-------C
gi|4 : atcTAAAGGTCTAA--T--GA--AACAAA--TCC------------------TTTGC------GAATTC-----A------CT-----AATCAA-GG-----T---TTATT-GA----ACAAG--GA--T-----T-CCTTTGT-TA-T--TTTTTTCTCTCAA-TG-CAAGACAAC-G-TCAA-CATAGC--TG-CT-CAA--AA-GT-GTTCGAT-CT-CAAAAATGATTTTCGA-TGGTCGCGG----CTGATCTCTCTTTGCTGA----TGACGTCAAAACGACCCACAATG---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT----AATAA-ATTATT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-AC-AGTGTTCTAT-ACATT------TAA------TCGTAAGAGTAGGCCACAAAAAGTTTTGTC--TATGTACCTTTTTCG----TGGGGA--TCCC-ACA-TTTAGAA---CAAACAAGC-T--ATG---CG-----TTTAAAATCTCCGTA--TAAGCTAGCCTAGTAG-GCCTACAT----GTT------C------CT-ACACTCGTACTCGCGTCCTCA--------------------TTATTTTCTTGTTATCGACAATAAA--ATTA--ATTTAATT-AGA-TTAATATTGTAAATAAACATTTCATTCtcaccgtgatg
gi|42 : tGTATCTCTTTCC----TAGGGA--TCCCAA-A-TTTAAAA---GAAAAA
gi|5 : GTCATA--T--GA--AAC-AAATTCCGAAGAAATTGAG--T---CCTGCA--TGCCAGTTC-----A------TT-----AATCAA-GGCTTA-T---T-----GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TCTCAA-TG-C---------G-TCAA-TACAAC--TG-AT-GAA--AA-GT-GCTCGAT-TT-CCAAAATGATTTTCGA-GGGTCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CG-----------------------------ACC--------CA-C-TAC--AATTT-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TTGTAGTAGTAGGTCGCAGAAGGTTTTGACTATATGTACCTCTTTCC----TGGGGA--TCC-------------------AAAAGC-TACATG---GG-----TTTCAAATATCCGTATTTAAACTAA-----------GTACAT----GTC------T------CT-AC------ACTC------------------A--T--A---CTCATTTTCTTGCTATTGACAATCAA--ATCA--AGCTAATTAA-A-TCAATATTGTAAAT---------ATTGT-ATA-TT------AAAAA----------G------------TATCATTCAGAAATA-AT---AATTAAT--CAGTCTTA-TATTg
gi|6 : AAGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTAAG--T---TCTGCA--TCAAGGTTT-----A------TT-----------------------------GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TTTCAA-TG-CAAGATAAT-A-TCAG-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTACAA-TGATTGCGG----CTGATCTCCCTTTGCTGA----T---------------------GACATCAAAACGGCCCACTGTGAT---------------------G---------------------T---AAA---------------------CAA---------CAGT---T---TGT-ATT----GACAA-ATTATT--------CA-C-TGC--A---T-ATC-TTTGAAAAATGC--A--AGTGTGC--T-ACATT------TAA------TCACAGTAGTAGGCCGCAGATGGTTGTGAG--TTTGTACCTCTTT-C----TGGGGA--TCCCAA-A-TTTAGAA---GGAAAAAGC-T--ATG---GGTAGCCTACCAAATCTCCCTATTTTATTAAGGCTAGT---GTGTA-AT----ATA------G------CT-AC------ACTTGCGTCCTCATTGAAAGGTATTT--AACTTTTTTTTTTTTttcttt
gi|7 : TAAAGGTCATA--T--GA--AAC-AAATCCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----AATCAA-GG-----T---TTATT-GA----ACAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT-TCTTCT-CG-CAAGACAAC-A-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--T-ACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---GAAAAAAGC-T--ATG---GG-----TTTCTAATCTCCGTA--TAAGCTAGCCGAGT---GTGTACAT----GTACATGTCT------CT-ACACTCATACTCGCGTCCTCATT-A
gi|8 : T---A--GAAT--TAA-CCTA-TATTT----CATAT-ACTCT--TAACTTTT-ATGTATG--T-CAGTCGTGT---T---TACACCA-GGGTGGGGGTTGGA------G-TAT-AAAATAATAGTCGATC--ATGACAtttt
gi|8 : cTATATAATT--A--ACGCAAATAACTTACTA------T-TAAAAAA-ACATAC----CCCCCCCCGCCCCC--------AATCAAAAC-----ACGAT---T-TGGGAACTT----CG-GACATT-------GTGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAA-CCGTGCGTCCTGTGAAATTATTCGTATCAAA-ATA-GAAA-----TA---AGATTATCATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTTTAAGTTCGCGAGTACGgcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatataattaacgcaaataacttactattaaaaaaacatacccccccccgcccccaatcaaaacacgatttgggaacttcggacattgtgggctcgaaagaaaacactgactggttatgaaaaccgtgcgtcctgtgaaattattcgtatcaaaatagaaataagattatcattacagtttttagacatattttattacgattaatcataaatagcatgccacggtcaatctatatacttttaagttcgcgagtacg
gi|9 : ctagaattaacctatatttcatatactcttaacttttatgtatgtcagtcgtgtttacaccagggtgggggttggagtataaaataatagtcgatcatgacagcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgcAAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|9 : agAGAAACCTACTA------T-TAATAA-CATATAC----CCCCCCCC-----CCCTCCCTAA-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatattaagaattgcctgttatagaaacctactattaataacatatacccccccccccctccctaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AAAATAATATTTGATCATATGGCAACTGGGTACGTAAATTTAAGGACTAGAATGAAATGCAAGGAATTTAGAAAATAACATACTATTAAAAATTAGGCAAGACCCCATTCTCCAAA
Unaligned ( gi|35 ): CTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAATCCACGAGGTCGACGATGATACGGCTTTTAATCCTTA
Unaligned ( gi|40 ): CTACGGCTCTCACCTTGCTGATGTCGTCAAAACCACCGTGATGTAAACATTTTGAAATTTAACAAAATTA
Unaligned ( gi|41 ): TGTGCATGTTTCTACACTCGTACTCGCGTTCTCATTATTTTCTTGTTAT
Unaligned ( gi|43 ): AATCCACGATATCCGACGATGATACGGCTTTTAATCCTT
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1111 11111 00000000000000000000000000000 111111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 1111111111111111111 11111111 111111 111111111 11111 11 111 1 444444444444444444444444 777777777777777777 111 111111 5555555555555555555 222222222 111111 11 22222222222222222222 333333 111111 1111 3333333333333333333333333333 1111111 3333333333 3333333333333 22222222222 1111
lowQualScore : 33 66 33 8888 33 444 33 0 11111 777777 22222222222222222222222222222 7777 33 77 111111111 2 4444 2 6 3 2 444 3 1 666 3 3 44 77 3 3 6 4 3 6666 2 6666 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 9999999999999999999 55555 00000000 2 5 33 444 2 2 2 33 33 2 555555 888888 1 44 4 6666 33 222222222 555 1 3 55 555 11111 33 2 22 2 0 0 333 0 9999 666666666666666666666666 444444444444444444 0 4 6 77 999 3 22 5 555 0 1 6 999999 4444444444444444444 3 333333333 66 4 4 444444 00 0 77 55555555555555555555 1 6 6 777777 8 0 99 1 1 0 444444 5 2 1 0000 5555555555555555555555555555 777 4 0 8888 4 3333333 2 4 3 55 0 7 5 5 5 0 3333333333 8888888888888 66 5 66 5 33333333333 0000 77 3 3 6 7
lowQualScore : .. .. .. .... .. ... .. . ..... ...... ............................. .... .. .. ......... . .... . . . . ... . . ... . . .. .. . . . . . .... . .... .................................................................................................................... ....... ................... ..... ........ . . .. ... . . . .. .. . ...... ...... . .. . .... .. ......... ... . . .. ... ..... .. . .. . . . ... . .... ........................ .................. . . . .. ... . .. . ... . . . ...... ................... . ......... .. . . ...... .. . .. .................... . . . ...... . . .. . . . ...... . . . .... ............................ ... . . .... . ....... . . . .. . . . . . . .......... ............. .. . .. . ........... .... .. . . . .
lowQualScore : 44 99 44 1111 44 444 44 4 66666 222222 44444444444444444444444444444 8888 44 33 555555555 9 8888 9 2 1 7 444 1 5 999 3 3 66 11 3 1 2 2 1 5555 1 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333 4444444444444444444 22222 44444444 7 3 77 777 7 7 7 77 77 7 333333 222222 0 22 6 1111 99 888888888 444 2 6 00 888 77777 44 5 22 9 9 1 999 2 4444 777777777777777777777777 888888888888888888 1 0 6 99 666 0 99 7 111 7 0 7 222222 7777777777777777777 0 888888888 99 4 4 888888 55 9 99 00000000000000000000 5 7 7 444444 0 8 22 0 4 9 444444 0 2 6 6666 0000000000000000000000000000 888 0 8 5555 0 0000000 5 0 6 00 1 6 0 0 0 5 2222222222 0000000000000 11 0 99 0 88888888888 6666 99 2 7 7 3
consensus : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTAT--AACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
Reference ( family-1431 ) : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTAT---ACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
gi|1 : TAAAGGTCATA--T--GA--AACGC--TTCGAAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----------------------------GA----ACAAG--AA--T-----T-C-TCTGT-T------TTTTT-TTTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--GG-AT-CAA--AA-GT-GGTCGAT-CT-CGAAAATGATTTTCGA-TGATCGTGC----TTTATTTCCCTATGCTG-----T---------------------G---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATC-A-AAACAA-ATTATT--------CA-C-TGT--A---T-GGC-TTTGAAAAATGCC-AC-AATGTGC--T-ACTTT------TAA------TCGTAGTAGTAGGCCTCAGAAGGTTGTGAT--TATGTACCTCTTTCC----TCGGGA--TCAC-A-A-TTTAGAA---GAAAACAGC-T--GTG---GG-----TACCAAATCTCCGTA--TA----AGCCTAAT---GTGTA-AT----GTA------G------CT-AT------ACTCGCGTCCTCGTTGAAAAGTATGTAACTTTTATTTTCTCGTTATCAACAATGAA--ATTC--AGCTAATC-A-A-TCAATTTTGTAATTAAACGTTTCATTCTGAGA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--GAA-CCTA-TATTT----CCTAT-ACTAT--ATACACTGAACGTACA--TGTA--CGTGTATACATGTACACCA--GGTGGGGGTG----T---TGTTATGAAAATAATATTTGATCAAATAACACAAATAACCTACTA------T-TAAAAAACATAGAC----CCCTCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAAC-T----AA-GATACT-------GAAGGCTCGAGAGAACACACCAACTGA-TTATGAAGAACCGTGCGTC-TGTAG--TTATTCG---------------------------------TATTACCG-TTTTAGACATA-------------TTTGATTTCGATTAATGAT--AAATGACATGCCACGGT-A--AATC---T-----------ATAC----TTATAAGTTCGTGAATATGCCTA--ATACGGC--------CGGCAATTCACGGGTTTT
gi|10 : AAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|10 : agAGAAACCTACTA------T-TAAATAACATATAC----CCCCCCCT-----CCCTAA---A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatataagaattgcctgttatagaaacctactattaaataacatatacccccccctccctaaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
gi|11 : agaattaacctatatattccataaacgctgaacgtacataagtttttaaaccaggatgggggtagggatacatgtatgaaaataatatttgatcatgacagcgtgaacgttatttaaagaactctcaatataagaattgcctgttatAAAGGTCATA--T--GA--AACCAA--CCCGAAGAAATTGAG--T---TCC-CA--TGCGAATTC-----A------TT-----AATCAA-GG-----T---TTAATTGA----ACAAA--AT--T-----C-C-TTTGT-TA-A--TTCTTT-TCTCAA-TG-CAAGATAACTG-TCAA-TACAGC--TGAAT-CAA--AA--T-GCT-GAT-CT-CGAAAATGA-TTTCGATTGAT-GCGG----CTGATCTACCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------TC--AAAACGACCCACAGTGATGTAAACCAAAA-------CAGT---T---TGT-A-T-T-AAACAA-ATTATT--------CAGC-TGC--A---TAAGCTTTTGAAAAATGCCAACAAATGTGC--T-ACATT------TAATCGTATTCGTAGTAGTAGGCCGCAGAAGTTTTGGGC--GA-GTACCT-TGTCC----TGGG----TTCC-A-A-ATTTGAA---GGAAAATGC-T--ATGCATGGT----TTCCAAATCTCCGT
gi|12 : aGTCACA--T--GA--AAC-AAATCCCGAAGAAATTTAG--T---TCTGCA--TGCAAATTT-----A------TTAATCAA------GGTTTA-T---T-----GG----ACAAG--AA--T-----TCC-TTTGT-TA-C--TTTTTT-TCTCA
gi|12 : at-ATTATT--------CA-C-TGT--A---T-AGC-TTTGAAAAATGCC-AT-AGTGCGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGTACCTTTTTCCTGCATGGGGA--TCCCAA-A-TTCAGAA---GAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattcactgtatagctttgaaaaatgccatagtgcgctacatttaatcgtagtagtaggccgcagaaggttttgactatgtacctttttcctgcatggggatcccaaattcagaagaaac
gi|13 : atgtcacatgaaacaaatcccgaagaaatttagttctgcatgcaaatttattaatcaaggtttattggacaagaattcctttgttactttttttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGTCACA--TTTGATAAAAGACATTTTGAG--AATTGAG--T---TATTCA--TAGGAATTC-----ATTTATTTT-----A------AG-----T---TATC--AA----ACAAAGCAA--T-----T-C-ATTGT-T-----TTATTT-TTTCAA----AAATATAAC---TCAATTACCAC---G-AT-CCA--AATGT-ATGGGAT-CTATGAAAATGA--TTCGG-TCGTCGCAGATATATAATCT---TTTGCTGG----T---------------------G---------------------CC---------------------G---------------------T----TT---------------------CAAAA--------AG------------ATT-TCCAACAGTCTTGTT-------------TGC--A---T-AGC-TTTGGAAAATGAG-AC-CTTGTG----------------TGA------TT------GTAGATCGC--------CAGAC--CATGTGATATTTCCC----AAGGGATTTTCC-A-A-TCTAGAA---GGAAAA--CAT--ACG---GG-----TA-CAAATCc
gi|14 : tgGGTCGTAGAGGGTTGCGAC--CATGTACCTGGTTCC----TAGGGA--TCCC-A-AATTCAGAAAAAGAAAAAAAA-T--ACG---G------TAC-AAATTTA-GTA--CAGGCCGTTCTAGTTTCATATCTATTAAAGTA------ATACGAGCA-AC------ACTCACGTCCTCA----AAAG------------GTTTTCTTGTCATCAATAATAAA--ATCT--AGATA--T-A---TTAATATTGCAAACAAACCTTTCATTCTGGAA-TA------AAAAA----------A--A---AAGAAGTATCATTCAG-AATA-AT--------------A-CCTA-TATTC----CACAT-GCT
gi|15 : AAAGTCATA--T--GA--AACGATATTTTGGAGAAATTTTG--T---TTTGCA--TCGGAATTC-----A------TT-----A------------------------A----ATAAG--AA--TCATTGT-T-TTTAT-CATA--TTTTAT-TC-AAA-TG-CAAGATAAC-G-TGAA-T-------CG-TT-CAA--AT-GT-ACCCGGT-CA-CGAAAATGATCTTCGA-TGATCgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgac
gi|15 : -C-TGC--T---T-AGC-TTCGGTAAATTAC-AC-ATTTTCC--T-ACAAC------TAA------TTGTTATTATAGGTCGCAGAAGGTTGCGAC--CATGTGCGTATTTCC----TAGGGA--TTCCGA-A-TTTAAAA---AGAAACA---T--ACG---GG-----TACccagattacccaactgtttgactctgcttagcttcggtaaattacacattttcctacaactaattgttattataggtcgcagaaggttgcgaccatgtgcgtatttcctagggattccgaatttaaaaagaaacatacgggtaca
gi|16 : aaagtcatatgaaacgatattttggagaaattttgttttgcatcggaattcattaaataagaatcattgtttttatcatattttattcaaatgcaagataacgtgaatcgttcaaatgtacccggtcacgaaaatgatcttcgatgatcccagattacccaactgtttgactCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTG-TGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--TAACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---G-AAAAAGC-T--ATG---GG-----TTTCTAATCT-CGTA---AAGCTAGCCGAGT---GTGTACAT----GTC------T------CT-ACACTCATACTCGCG-CCTCATT-Aa
gi|17 : A---------------------CAAAA-------CACT---T---CGT-ATT----AACAA-ATTATT--------CA-C-TGC--A---T-TGC-TTTGGAAAATGCC-AC-AATGTGT--A-ACATT------Tttttctttttattct
gi|18 : tatgaaacgatttccgaaaaaaaaaaaaagaattatgcatggaaattttatttatcaagatttattcaagaagaatttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTG---GG-----TACCAAATATCAGTA--TGA---AACCTAAT---ATGTA-AT----GTA------G------AT-AC------ACTCATGTCCTCACTGAAAAGTATGGAACTTTTATTTTCTTATTATC-ACTGTTCGTTATCTTTGTCT--TT-A-AATCAATATTCTAAATAAACCTTTCATTCTGACATTT------AAAAAATCTAGAAGTATCATTTAGAAATTATCATTCAGAAATA------A--TAAT--TCA-CATA-TAGTC----CATAT-ACTATAAAAACACTGAACGT--------A--CGAGT-TATC--TAGA--GGGGGTGGGGGTG
gi|19 : C-----C--------A-CCAAATC-----ATGATAAATATGTAAAC------CAAGACATTAATTGAGGAGGGCTCAAGAAAAAACA--GACTGA-TTATGAAGAACCGTGCTTC-TGTAA--CTATTCGT-TTAAATA-A-GAAAATACTTA-TAGGATTACCATTACAGTTTTAAGACATA-------------TTTTATTATGATTAATCATTAAAATGATATGCTACGGTACCAAATCTAGTAGATTTGGGCAATACGTGTTTGTAAGTTCGTGAATATGCCTA--ATACGTCTTCATCATTGGGAA-TCACGGGTTTTcgttgtaa
gi|2 : AAAGGTCATA--TAAGA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGAAATTGCAAATTC-----A------TT-----AAATCAAGG-----T---TTATT-GA----ACAAG--AAATT-----C-C-TTTGTCTA-A--TTTTTT-TCTCAAATG-CAAGATACC-GGTCAA-TGCAGC--TA-AT-CAAGAAA-GT-GCTCGAT-TT-CGAAAATGATTTTCGA-TGATCGCGG----CGAATCTCT-TTTGCTGACAAAT---------------------G---------------------ACGTCCAAAAGACCCACAGTAATG---------------------T---AAA---------------------AAAAAAAAAAACCAGT---AAGAGGT-ATT-T-AA-CAA-ATTATTTCATTATTCA-C-TGC--A---T-AGC-TTTGAAAAATGCC-A---GTTTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGAAGAAGGTTTTGAC--TAAGTACCTGTTTCC----TGGGGA--TCCC-A-------GAA---GAAAAAGGC-T--ATA----------TAGTAGAGGTC--TA--TAAGCTAGCCTAAC---ATGTCTCT----GTA------CA-----CTCGT------GCTCGCGTCCTCATT-A-----------------TGTTCTTGTTATCGACAATCAG--ATCC--AGCTAATT-A-AATTAATATTGTAAATAAACCTTTCAATCCGACA-TT------AAAAA----------A--ATTTGTGAAGTATCATTTAGAAAT
gi|20 : CACAAAAAACATGTAA------T---AAAAATATAGAA----GACCCCAC-----C-----------CAAA------------------------TT----TA-GACATT-------TCGGGCGTGCGAAGAAGCAATAAATGGATTATGAAGAACCGTGAGTT-TGTGG--Tt
gi|21 : attcagaataatacctatattccacatgctgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgacagcgggtacgtaaaataaagacctaagtaaatgcattacctgctgaagaattaacGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTGAG--T---TATGCA--TGGAATTTC-----A------TTTATAAA------GA-----TTTAT-----GAT---ACAAG--AA--T-----T-CATTTG---A-A--TTTTTT---TTAA-TG-CGAGA-AAC-G-TCGG----------------AA--A--------TGAT-CT-------------TCGG-TGATCGCGT----CTTATCTCCCATTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAA---------------------AAAGA-------C
gi|21 : --------CA-T-TGCTGA---T-GAC-GTCAAAAAGACCC-AC-A-TGTGC--T-GCATT-------AA------TCGTAGTAGTAGGccacatgtgctgcattaatcgtagtagtagg
gi|22 : ggtcatatgaaacgatttccgaagaaattgagttatgcatggaatttcatttataaagatttatgatacaagaattcatttgaattttttttaatgcgagaaacgtcggaaatgatcttcggtgatcgcgtcttatctccACACAAAAAACATGTAA------T-TAAAATATAGAAGG----CACCCCAC-----C--------A--------------CAAT---T----AAACTT----TA-GACATC-------TCGGGCGTGCGAAGAAGCAATAAATGG-TTATGAAGAACCGTGAGTT-TGTGG--T
gi|23 : aaacaatatttgatcttatgacagcgggtacgtaaaataaacaactataaagtaaatgcattacctgctgaagaattaaATCGCGG----CTTATTTCCGTTTGATAA----A---------------------G---------------------AC---------------------GTCAAAAATACCCATTGTGATAT---AAA---------------------CAAAAA------CAGT---T---TGT-ATT----AACAA-AGTATT--------TA-C-TGC--A---T-ATC-TTTGAAAAATGCC-AC-AGTGAGC--T-ACAGG------TAA------TCGTAGTAGTAGGTCGCAGAAGTTTGTGAC--CATGTACATCTTCTC----AAGGGA--TC
gi|24 : TAT----CTTTTATCTTCTCAT-ATCAATAAT-AA--ATCC--AG---ATC-A-A-TTCATATTGTAAAAAATCCTTTCATTCTGAAA-TTCATAGAAGAAA----------ATTAATT--AAAT--TCAT---GAAATGCATTGAA--TAATAATGA-CCTATTATTC----CATATCACTAT--
gi|25 : agagcaga-----T---T-----AA----ACAAG--AA--T-----T-T-AATTT-TA-AAATATTTT-TTTAAAATG-CAAGA---------AA-T--------G-AT-GAA--GATGTTACTCGATGCA-C-ACAATGG-----GG-T--TCGTAA----CTTATCTCCC-TTGCTGA----T---------------------G----------------------C---------------------G---------------------TCCAAAA---------------------CGAAC-------CA-----C---TGT-GCTGT-AAACAA-catacttaact
gi|26 : gaattgcaataattaagctgtaAAGGTGATA--T--GA--AACGAT-TTCCGAAAAAAAAAAGAAT---TATGCA--TGGGAATTTTATTTA------TC-----A------AGATTTAT---T-----CA----AGAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT----CAA-TG-CAAGATAAC-G-TCAG-TACAGCNTTG-ATATGA--AA-------CGAT-TTCCGAAAcaaa
gi|27 : TACAGTTTTTAGACATA-------------TTTTATTACGATTTATCAT--ACGTAGCATGTCACGGT-C--AATCTA-T-----------AAAC----TTGTAAGTTCGTGGGTACGCCTG--ATAAGGCTTCATCGTC-GGAATTCACGGGTTTT
gi|28 : GGTCATA--T--GA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGCA--TGCCAATTC-----A------TTAATCAA------GGTTTA-T---T-----GA----ACAAG--AAATT-----C-C-TTCGT-TA-A---TTTTT-TCTCCA-TGCCAAGATAAC-G-TCAA-TAC
gi|3 : AA-CCTA-TATTTTCGTCATTT--C--------CGCTGAACGTACATTT-TA--CGTGT-TAT-----AACCAGGGGTGGAGGTGGTG------G-TATG------ATATTTGATC--ATGACAGCGGGAACGT--TA------TCTAAAGAAC
gi|3 : ACGCAAATACCCTACTAGTACTAT-TACAAAATATATACACCCCCCCTCCC-----C--------AATCAAACACTTGAACGAT---T-TGTGAACTT----CA-GACATT-------GCGCGCTCGAAAGAAAACACTGACTGG-TTATGAAATACCGTACGTC-TGTGA--TTACTCATATCAAA-A-A-GAAA-----TA---GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTATGATTAATCAG--AAATAGCATGCCAAGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCATGAGTACGCCTAATATACGGCTTCtaatgtaaagaattacctgcgatagaattaaacgcaaataccctactagtactattacaaaatatatacaccccccctccccaatcaaacacttgaacgatttgtgaacttcagacattgcgcgctcgaaagaaaacactgactggttatgaaataccgtacgtctgtgattactcatatcaaaaagaaataggattattattacagtttttagacatattttattatgattaatcagaaatagcatgccaaggtcaatctatatacttgtaagttcatgagtacgcctaatatacggcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|30 : aacctatattttcgtcatttccgctgaacgtacattttacgtgttataaccaggggtggaggtggtggtatgatatttgatcatgacagcgggaacgttatctaaagaactaatgtaaagaattacctgcgatagaattaaC----CCCCCCCC-----C--------A-TCAAACACTTGAACGAT---T-TATGAACTTAATTCA-GACATT-------TTGCGCTTGAGTGAAAACGCTTACTGG-TTATGAAATACCGTACGTC-TGTGA--Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|31 : caccc-TGTGAACTT----CA-GACATT-------GCGCGCTCGAA--------------GG-TTATGAAATACCGTCCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-TAGGATTATTATTACAGTTTTTAGACATA-------------
gi|32 : ----T---------------------G---------------------AT---------------------T---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ACC-T-AAGCA------TT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-A---GTGTGC--T-GCATT------TCA------TTGTAATAGTAATTCGCAGAAGGTTGTG
gi|33 : cgGTC-TGTGA--TTATTCGTATCAAA-A-AAGAAA-----AA-A-GGATAATTATTA--GTTTTTAGACATACATGTACAATGCATTTTATTACGATTAATCAG--AAATAGCATG
gi|34 : CAGTTTTTAGACATACATTTTGTA----TTTTAGTACGATTAATCAT--AAATAGCATGTCACGGT-C--AATCTA-T-----------TTAC----TTGTAAGTTCGTGAGTACGCCTA--ATA
gi|36 : AAGGTAATA--T--GA--AACGATATTCTGAAGAAGCCGAG--TTAATTTG-----GGGAATTC-----A------TT-----A------
gi|37 : ttAAGGTCATAAAT--GA--AACGAT-TTCCGAAGAAATTGAG--T---TACGCA--TGGGAATTA-----A------TTTATC-A------CA-----T---T-----TACTACACAAG--AA--T-----T-C-atcaagttgtgctacacaaaagttcatt
gi|38 : AAGGTCATA--T--GA--AACGAT-TTCCAAAGAAATTGAG--T---TCTGCA--TGGGAATTCTTTT-A------TC-----A------AGATTTAT---T-----GA----ACAAA--Aca
gi|39 : AGAATGATCTTCGA-TGATCACGG----TTTATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAG---------------------AAAGA-------C
gi|4 : atcTAAAGGTCTAA--T--GA--AACAAA--TCC------------------TTTGC------GAATTC-----A------CT-----AATCAA-GG-----T---TTATT-GA----ACAAG--GA--T-----T-CCTTTGT-TA-T--TTTTTTCTCTCAA-TG-CAAGACAAC-G-TCAA-CATAGC--TG-CT-CAA--AA-GT-GTTCGAT-CT-CAAAAATGATTTTCGA-TGGTCGCGG----CTGATCTCTCTTTGCTGA----TGACGTCAAAACGACCCACAATG---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT----AATAA-ATTATT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-AC-AGTGTTCTAT-ACATT------TAA------TCGTAAGAGTAGGCCACAAAAAGTTTTGTC--TATGTACCTTTTTCG----TGGGGA--TCCC-ACA-TTTAGAA---CAAACAAGC-T--ATG---CG-----TTTAAAATCTCCGTA--TAAGCTAGCCTAGTAG-GCCTACAT----GTT------C------CT-ACACTCGTACTCGCGTCCTCA------------------TTATTTTCTTGTTATCGACAATAAA--ATTA--ATTTAATT-AGA-TTAATATTGTAAATAAACATTTCATTCtcaccgtgatg
gi|42 : tGTATCTCTTTCC----TAGGGA--TCCCAA-A-TTTAAAA---GAAAAA
gi|5 : GTCATA--T--GA--AAC-AAATTCCGAAGAAATTGAG--T---CCTGCA--TGCCAGTTC-----A------TT-----AATCAA-GGCTTA-T---T-----GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TCTCAA-TG-C---------G-TCAA-TACAAC--TG-AT-GAA--AA-GT-GCTCGAT-TT-CCAAAATGATTTTCGA-GGGTCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CG-----------------------------ACC--------CA-C-TAC--AATTT-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TTGTAGTAGTAGGTCGCAGAAGGTTTTGACTATATGTACCTCTTTCC----TGGGGA--TCC-------------------AAAAGC-TACATG---GG-----TTTCAAATATCCGTATTTAAACTAA-----------GTACAT----GTC------T------CT-AC------ACTC------------------AT---AC--TCATTTTCTTGCTATTGACAATCAA--ATCA--AGCTAATTAA-A-TCAATATTGTAAAT---------ATTGT-ATA-TT------AAAAA----------G------------TATCATTCAGAAATA-AT---AATTAAT--CAGTCTTA-TATTg
gi|6 : AAGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTAAG--T---TCTGCA--TCAAGGTTT-----A------TT-----------------------------GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TTTCAA-TG-CAAGATAAT-A-TCAG-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTACAA-TGATTGCGG----CTGATCTCCCTTTGCTGA----T---------------------GACATCAAAACGGCCCACTGTGAT---------------------G---------------------T---AAA---------------------CAA---------CAGT---T---TGT-ATT----GACAA-ATTATT--------CA-C-TGC--A---T-ATC-TTTGAAAAATGC--A--AGTGTGC--T-ACATT------TAA------TCACAGTAGTAGGCCGCAGATGGTTGTGAG--TTTGTACCTCTTT-C----TGGGGA--TCCCAA-A-TTTAGAA---GGAAAAAGC-T--ATG---GGTAGCCTACCAAATCTCCCTATTTTATTAAGGCTAGT---GTGTA-AT----ATA------G------CT-AC------ACTTGCGTCCTCATTGAAAGGTATTTAACTTTTTTTTTTTTttcttt
gi|7 : TAAAGGTCATA--T--GA--AAC-AAATCCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----AATCAA-GG-----T---TTATT-GA----ACAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT-TCTTCT-CG-CAAGACAAC-A-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--T-ACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---GAAAAAAGC-T--ATG---GG-----TTTCTAATCTCCGTA--TAAGCTAGCCGAGT---GTGTACAT----GTACATGTCT------CT-ACACTCATACTCGCGTCCTCATT-A
gi|8 : T---A--GAAT--TAA-CCTA-TATTT----CATAT-ACTCT--TAACTTTT-ATGTATG--T-CAGTCGTGT---T---TACACCA-GGGTGGGGGTTGGA------G-TAT-AAAATAATAGTCGATC--ATGACAtttt
gi|8 : cTATATAATT--A--ACGCAAATAACTTACTA------T-TAAAAAA-ACATAC----CCCCCCCCGCCCCC--------AATCAAAAC-----ACGAT---T-TGGGAACTT----CG-GACATT-------GTGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAA-CCGTGCGTCCTGTGAAATTATTCGTATCAAA-ATA-GAAA-----TA---AGATTATCATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTTTAAGTTCGCGAGTACGgcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatataattaacgcaaataacttactattaaaaaaacatacccccccccgcccccaatcaaaacacgatttgggaacttcggacattgtgggctcgaaagaaaacactgactggttatgaaaaccgtgcgtcctgtgaaattattcgtatcaaaatagaaataagattatcattacagtttttagacatattttattacgattaatcataaatagcatgccacggtcaatctatatacttttaagttcgcgagtacg
gi|9 : ctagaattaacctatatttcatatactcttaacttttatgtatgtcagtcgtgtttacaccagggtgggggttggagtataaaataatagtcgatcatgacagcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgcAAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|9 : agAGAAACCTACTA------T-TAATAA-CATATAC----CCCCCCCC-----CCCTCCCTAA-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatattaagaattgcctgttatagaaacctactattaataacatatacccccccccccctccctaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AAAATAATATTTGATCATATGGCAACTGGGTACGTAAATTTAAGGACTAGAATGAAATGCAAGGAATTTAGAAAATAACATACTATTAAAAATTAGGCAAGACCCCATTCTCCAAA
Unaligned ( gi|35 ): CTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAATCCACGAGGTCGACGATGATACGGCTTTTAATCCTTA
Unaligned ( gi|40 ): CTACGGCTCTCACCTTGCTGATGTCGTCAAAACCACCGTGATGTAAACATTTTGAAATTTAACAAAATTA
Unaligned ( gi|41 ): TGTGCATGTTTCTACACTCGTACTCGCGTTCTCATTATTTTCTTGTTAT
Unaligned ( gi|43 ): AATCCACGATATCCGACGATGATACGGCTTTTAATCCTT
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1111 11111 00000000000000000000000000000 111111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 1111111111111111111 11111111 111111 11111111 11111 11 111 1 444444444444444444444444 88888888888888888888 11111 111111 5555555555555555555 222222222 111111 11 22222222222222222222 333333 111111 1111 3333333333333333333333333333 1111111 3333333333 3333333333333 22222222222 1111
lowQualScore : 33 66 33 8888 33 444 33 0 11111 777777 22222222222222222222222222222 7777 33 77 111111111 2 4444 2 6 3 2 444 3 1 666 3 3 44 77 3 3 6 4 3 6666 2 6666 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 9999999999999999999 55555 00000000 2 5 33 444 2 2 2 33 33 2 555555 888888 1 44 4 6666 33 44444444 555 1 3 55 555 11111 33 2 22 2 0 0 333 0 9999 666666666666666666666666 00000000000000000000 0 4 6 77 999 3 22 11111 0 1 6 999999 4444444444444444444 3 333333333 66 4 4 444444 00 0 77 55555555555555555555 1 6 6 777777 8 0 99 1 1 0 444444 5 2 1 0000 5555555555555555555555555555 777 4 0 8888 4 3333333 2 4 3 55 0 7 5 5 5 0 3333333333 8888888888888 66 5 66 5 33333333333 0000 77 3 3 6 7
lowQualScore : .. .. .. .... .. ... .. . ..... ...... ............................. .... .. .. ......... . .... . . . . ... . . ... . . .. .. . . . . . .... . .... .................................................................................................................... ....... ................... ..... ........ . . .. ... . . . .. .. . ...... ...... . .. . .... .. ........ ... . . .. ... ..... .. . .. . . . ... . .... ........................ .................... . . . .. ... . .. ..... . . . ...... ................... . ......... .. . . ...... .. . .. .................... . . . ...... . . .. . . . ...... . . . .... ............................ ... . . .... . ....... . . . .. . . . . . . .......... ............. .. . .. . ........... .... .. . . . .
lowQualScore : 44 99 44 1111 44 444 44 4 66666 222222 44444444444444444444444444444 8888 44 33 555555555 9 8888 9 2 1 7 444 1 5 999 3 3 66 11 3 1 2 2 1 5555 1 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333 4444444444444444444 22222 44444444 7 3 77 777 7 7 7 77 77 7 333333 222222 0 22 6 1111 99 22222222 444 2 6 00 888 77777 44 5 22 9 9 1 999 2 4444 777777777777777777777777 77777777777777777777 1 0 6 99 666 0 99 99999 7 0 7 222222 7777777777777777777 0 888888888 99 4 4 888888 55 9 99 00000000000000000000 5 7 7 444444 0 8 22 0 4 9 444444 0 2 6 6666 0000000000000000000000000000 888 0 8 5555 0 0000000 5 0 6 00 1 6 0 0 0 5 2222222222 0000000000000 11 0 99 0 88888888888 6666 99 2 7 7 3
consensus : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTA--T--A-CTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
Reference ( family-1431 ) : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTA--T--AACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
gi|1 : TAAAGGTCATA--T--GA--AACGC--TTCGAAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----------------------------GA----ACAAG--AA--T-----T-C-TCTGT-T------TTTTT-TTTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--GG-AT-CAA--AA-GT-GGTCGAT-CT-CGAAAATGATTTTCGA-TGATCGTGC----TTTATTTCCCTATGCTG-----T---------------------G---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATC-A-AAACAA-ATTATT--------CA-C-TGT--A---T-GGC-TTTGAAAAATGCC-AC-AATGTGC--T-ACTTT------TAA------TCGTAGTAGTAGGCCTCAGAAGGTTGTGAT--TATGTACCTCTTTCC----TCGGGA--TCAC-A-A-TTTAGAA---GAAAACAGC-T--GTG---GG-----TACCAAATCTCCGTA--TA----AGCCTAAT---GTGTA-AT----GTA------G------CT-AT------ACTCGCGTCCTCGTTGAAAAGTATGT--AACTTTTATTTTCTCGTTATCAACAATGAA--ATTC--AGCTAATC-A-A-TCAATTTTGTAATTAAACGTTTCATTCTGAGA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--GAA-CCTA-TATTT----CCTAT-ACTAT--ATACACTGAACGTACA--TGTA--CGTGTATACATGTACACCA--GGTGGGGGTG----T---TGTTATGAAAATAATATTTGATCAAATAACACAAATAACCTACTA------T-TAAAAAACATAGAC----CCCTCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAAC-T----AA-GATACT-------GAAGGCTCGAGAGAACACACCAACTGA-TTATGAAGAACCGTGCGTC-TGTAG--TTATTCG---------------------------------TATTACCG-TTTTAGACATA-------------TTTGATTTCGATTAATGAT--AAATGACATGCCACGGT-A--AATC---T-----------ATAC----TTATAAGTTCGTGAATATGCCTA--ATACGGC--------CGGCAATTCACGGGTTTT
gi|10 : AAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|10 : agAGAAACCTACTA------T-TAAATAACATATAC----CCCCCCCT-----CCCTAA---A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatataagaattgcctgttatagaaacctactattaaataacatatacccccccctccctaaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
gi|11 : agaattaacctatatattccataaacgctgaacgtacataagtttttaaaccaggatgggggtagggatacatgtatgaaaataatatttgatcatgacagcgtgaacgttatttaaagaactctcaatataagaattgcctgttatAAAGGTCATA--T--GA--AACCAA--CCCGAAGAAATTGAG--T---TCC-CA--TGCGAATTC-----A------TT-----AATCAA-GG-----T---TTAATTGA----ACAAA--AT--T-----C-C-TTTGT-TA-A--TTCTTT-TCTCAA-TG-CAAGATAACTG-TCAA-TACAGC--TGAAT-CAA--AA--T-GCT-GAT-CT-CGAAAATGA-TTTCGATTGAT-GCGG----CTGATCTACCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------TC--AAAACGACCCACAGTGATGTAAACCAAAA-------CAGT---T---TGT-A-T-T-AAACAA-ATTATT--------CAGC-TGC--A---TAAGCTTTTGAAAAATGCCAACAAATGTGC--T-ACATT------TAATCGTATTCGTAGTAGTAGGCCGCAGAAGTTTTGGGC--GA-GTACCT-TGTCC----TGGG----TTCC-A-A-ATTTGAA---GGAAAATGC-T--ATGCATGGT----TTCCAAATCTCCGT
gi|12 : aGTCACA--T--GA--AAC-AAATCCCGAAGAAATTTAG--T---TCTGCA--TGCAAATTT-----A------TTAATCAA------GGTTTA-T---T-----GG----ACAAG--AA--T-----TCC-TTTGT-TA-C--TTTTTT-TCTCA
gi|12 : at-ATTATT--------CA-C-TGT--A---T-AGC-TTTGAAAAATGCC-AT-AGTGCGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGTACCTTTTTCCTGCATGGGGA--TCCCAA-A-TTCAGAA---GAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattcactgtatagctttgaaaaatgccatagtgcgctacatttaatcgtagtagtaggccgcagaaggttttgactatgtacctttttcctgcatggggatcccaaattcagaagaaac
gi|13 : atgtcacatgaaacaaatcccgaagaaatttagttctgcatgcaaatttattaatcaaggtttattggacaagaattcctttgttactttttttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGTCACA--TTTGATAAAAGACATTTTGAG--AATTGAG--T---TATTCA--TAGGAATTC-----ATTTATTTT-----A------AG-----T---TATC--AA----ACAAAGCAA--T-----T-C-ATTGT-T-----TTATTT-TTTCAA----AAATATAAC---TCAATTACCAC---G-AT-CCA--AATGT-ATGGGAT-CTATGAAAATGA--TTCGG-TCGTCGCAGATATATAATCT---TTTGCTGG----T---------------------G---------------------CC---------------------G---------------------T----TT---------------------CAAAA--------AG------------ATT-TCCAACAGTCTTGTT-------------TGC--A---T-AGC-TTTGGAAAATGAG-AC-CTTGTG----------------TGA------TT------GTAGATCGC--------CAGAC--CATGTGATATTTCCC----AAGGGATTTTCC-A-A-TCTAGAA---GGAAAA--CAT--ACG---GG-----TA-CAAATCc
gi|14 : tgGGTCGTAGAGGGTTGCGAC--CATGTACCTGGTTCC----TAGGGA--TCCC-A-AATTCAGAAAAAGAAAAAAAA-T--ACG---G------TAC-AAATTTA-GTA--CAGGCCGTTCTAGTTTCATATCTATTAAAGTA------ATACGAGCA-AC------ACTCACGTCCTCA----AAAG--------------GTTTTCTTGTCATCAATAATAAA--ATCT--AGATA--T-A---TTAATATTGCAAACAAACCTTTCATTCTGGAA-TA------AAAAA----------A--A---AAGAAGTATCATTCAG-AATA-AT--------------A-CCTA-TATTC----CACAT-GCT
gi|15 : AAAGTCATA--T--GA--AACGATATTTTGGAGAAATTTTG--T---TTTGCA--TCGGAATTC-----A------TT-----A------------------------A----ATAAG--AA--TCATTGT-T-TTTAT-CATA--TTTTAT-TC-AAA-TG-CAAGATAAC-G-TGAA-T-------CG-TT-CAA--AT-GT-ACCCGGT-CA-CGAAAATGATCTTCGA-TGATCgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgac
gi|15 : -C-TGC--T---T-AGC-TTCGGTAAATTAC-AC-ATTTTCC--T-ACAAC------TAA------TTGTTATTATAGGTCGCAGAAGGTTGCGAC--CATGTGCGTATTTCC----TAGGGA--TTCCGA-A-TTTAAAA---AGAAACA---T--ACG---GG-----TACccagattacccaactgtttgactctgcttagcttcggtaaattacacattttcctacaactaattgttattataggtcgcagaaggttgcgaccatgtgcgtatttcctagggattccgaatttaaaaagaaacatacgggtaca
gi|16 : aaagtcatatgaaacgatattttggagaaattttgttttgcatcggaattcattaaataagaatcattgtttttatcatattttattcaaatgcaagataacgtgaatcgttcaaatgtacccggtcacgaaaatgatcttcgatgatcccagattacccaactgtttgactCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTG-TGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--TAACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---G-AAAAAGC-T--ATG---GG-----TTTCTAATCT-CGTA---AAGCTAGCCGAGT---GTGTACAT----GTC------T------CT-ACACTCATACTCGCG-CCTCATT-Aa
gi|17 : A---------------------CAAAA-------CACT---T---CGT-ATT----AACAA-ATTATT--------CA-C-TGC--A---T-TGC-TTTGGAAAATGCC-AC-AATGTGT--A-ACATT------Tttttctttttattct
gi|18 : tatgaaacgatttccgaaaaaaaaaaaaagaattatgcatggaaattttatttatcaagatttattcaagaagaatttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTG---GG-----TACCAAATATCAGTA--TGA---AACCTAAT---ATGTA-AT----GTA------G------AT-AC------ACTCATGTCCTCACTGAAAAGTA--TGGAACTTTTATTTTCTTATTATC-ACTGTTCGTTATCTTTGTCT--TT-A-AATCAATATTCTAAATAAACCTTTCATTCTGACATTT------AAAAAATCTAGAAGTATCATTTAGAAATTATCATTCAGAAATA------A--TAAT--TCA-CATA-TAGTC----CATAT-ACTATAAAAACACTGAACGT--------A--CGAGT-TATC--TAGA--GGGGGTGGGGGTG
gi|19 : C-----C--------A-CCAAATC-----ATGATAAATATGTAAAC------CAAGACATTAATTGAGGAGGGCTCAAGAAAAAACA--GACTGA-TTATGAAGAACCGTGCTTC-TGTAA--CTATTCGT-TTAAATA-A-GAAAATACTTA-TAGGATTACCATTACAGTTTTAAGACATA-------------TTTTATTATGATTAATCATTAAAATGATATGCTACGGTACCAAATCTAGTAGATTTGGGCAATACGTGTTTGTAAGTTCGTGAATATGCCTA--ATACGTCTTCATCATTGGGAA-TCACGGGTTTTcgttgtaa
gi|2 : AAAGGTCATA--TAAGA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGAAATTGCAAATTC-----A------TT-----AAATCAAGG-----T---TTATT-GA----ACAAG--AAATT-----C-C-TTTGTCTA-A--TTTTTT-TCTCAAATG-CAAGATACC-GGTCAA-TGCAGC--TA-AT-CAAGAAA-GT-GCTCGAT-TT-CGAAAATGATTTTCGA-TGATCGCGG----CGAATCTCT-TTTGCTGACAAAT---------------------G---------------------ACGTCCAAAAGACCCACAGTAATG---------------------T---AAA---------------------AAAAAAAAAAACCAGT---AAGAGGT-ATT-T-AA-CAA-ATTATTTCATTATTCA-C-TGC--A---T-AGC-TTTGAAAAATGCC-A---GTTTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGAAGAAGGTTTTGAC--TAAGTACCTGTTTCC----TGGGGA--TCCC--------AGAA---GAAAAAGGC-T--AT-----A-----TAGTAGAGGTC--TA--TAAGCTAGCCTAAC---ATGTCTCT----GTAC-----A------CTCGT------GCTCGCGTCCTCA--------------------TTATGTTCTTGTTATCGACAATCAG--ATCC--AGCTAATTAA-A-TTAATATTGTAAATAAACCTTTCAATCCGACA-TT------AAAAA----------A--ATTTGTGAAGTATCATTTAGAAAT
gi|20 : CACAAAAAACATGTAA------T---AAAAATATAGAA----GACCCCAC-----C-----------CAAA------------------------TT----TA-GACATT-------TCGGGCGTGCGAAGAAGCAATAAATGGATTATGAAGAACCGTGAGTT-TGTGG--Tt
gi|21 : attcagaataatacctatattccacatgctgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgacagcgggtacgtaaaataaagacctaagtaaatgcattacctgctgaagaattaacGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTGAG--T---TATGCA--TGGAATTTC-----A------TTTATAAA------GA-----TTTAT-----GAT---ACAAG--AA--T-----T-CATTTG---A-A--TTTTTT---TTAA-TG-CGAGA-AAC-G-TCGG----------------AA--A--------TGAT-CT-------------TCGG-TGATCGCGT----CTTATCTCCCATTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAA---------------------AAAGA-------C
gi|21 : --------CA-T-TGCTGA---T-GAC-GTCAAAAAGACCC-AC-A-TGTGC--T-GCATT-------AA------TCGTAGTAGTAGGccacatgtgctgcattaatcgtagtagtagg
gi|22 : ggtcatatgaaacgatttccgaagaaattgagttatgcatggaatttcatttataaagatttatgatacaagaattcatttgaattttttttaatgcgagaaacgtcggaaatgatcttcggtgatcgcgtcttatctccACACAAAAAACATGTAA------T-TAAAATATAGAAGG----CACCCCAC-----C--------A--------------CAAT---T----AAACTT----TA-GACATC-------TCGGGCGTGCGAAGAAGCAATAAATGG-TTATGAAGAACCGTGAGTT-TGTGG--T
gi|23 : aaacaatatttgatcttatgacagcgggtacgtaaaataaacaactataaagtaaatgcattacctgctgaagaattaaATCGCGG----CTTATTTCCGTTTGATAA----A---------------------G---------------------AC---------------------GTCAAAAATACCCATTGTGATAT---AAA---------------------CAAAAA------CAGT---T---TGT-ATT----AACAA-AGTATT--------TA-C-TGC--A---T-ATC-TTTGAAAAATGCC-AC-AGTGAGC--T-ACAGG------TAA------TCGTAGTAGTAGGTCGCAGAAGTTTGTGAC--CATGTACATCTTCTC----AAGGGA--TC
gi|24 : A--T--ATCTTTTATCTTCTCAT-ATCAATAAT-AA--ATCC--AG---ATC-A-A-TTCATATTGTAAAAAATCCTTTCATTCTGAAA-TTCATAGAAGAAA----------ATTAATT--AAAT--TCAT---GAAATGCATTGAA--TAATAATGA-CCTATTATTC----CATATCACTAT--
gi|25 : agagcag-----T---T-----AA----ACAAG--AA--T-----T-T-AATTT-TA-AAATATTTT-TTTAAAATG-CAAGA---------AA-T--------G-AT-GAA--GATGTTACTCGATGCA-C-ACAATGG-----GG-T--TCGTAA----CTTATCTCCC-TTGCTGA----T---------------------G----------------------C---------------------G---------------------TCCAAAA---------------------CGAAC-------CA-----C---TGT-GCTGT-AAACAA-catacttaact
gi|26 : gaattgcaataattaagctgtaAAGGTGATA--T--GA--AACGAT-TTCCGAAAAAAAAAAGAAT---TATGCA--TGGGAATTTTATTTA------TC-----A------AGATTTAT---T-----CA----AGAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT----CAA-TG-CAAGATAAC-G-TCAG-TACAGCNTTG-ATATGA--AA-------CGAT-TTCCGAAAcaaa
gi|27 : TACAGTTTTTAGACATA-------------TTTTATTACGATTTATCAT--ACGTAGCATGTCACGGT-C--AATCTA-T-----------AAAC----TTGTAAGTTCGTGGGTACGCCTG--ATAAGGCTTCATCGTC-GGAATTCACGGGTTTT
gi|28 : GGTCATA--T--GA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGCA--TGCCAATTC-----A------TTAATCAA------GGTTTA-T---T-----GA----ACAAG--AAATT-----C-C-TTCGT-TA-A---TTTTT-TCTCCA-TGCCAAGATAAC-G-TCAA-TAC
gi|3 : AA-CCTA-TATTTTCGTCATTT--C--------CGCTGAACGTACATTT-TA--CGTGT-TAT-----AACCAGGGGTGGAGGTGGTG------G-TATG------ATATTTGATC--ATGACAGCGGGAACGT--TA------TCTAAAGAAC
gi|3 : ACGCAAATACCCTACTAGTACTAT-TACAAAATATATACACCCCCCCTCCC-----C--------AATCAAACACTTGAACGAT---T-TGTGAACTT----CA-GACATT-------GCGCGCTCGAAAGAAAACACTGACTGG-TTATGAAATACCGTACGTC-TGTGA--TTACTCATATCAAA-A-A-GAAA-----TA---GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTATGATTAATCAG--AAATAGCATGCCAAGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCATGAGTACGCCTAATATACGGCTTCtaatgtaaagaattacctgcgatagaattaaacgcaaataccctactagtactattacaaaatatatacaccccccctccccaatcaaacacttgaacgatttgtgaacttcagacattgcgcgctcgaaagaaaacactgactggttatgaaataccgtacgtctgtgattactcatatcaaaaagaaataggattattattacagtttttagacatattttattatgattaatcagaaatagcatgccaaggtcaatctatatacttgtaagttcatgagtacgcctaatatacggcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|30 : aacctatattttcgtcatttccgctgaacgtacattttacgtgttataaccaggggtggaggtggtggtatgatatttgatcatgacagcgggaacgttatctaaagaactaatgtaaagaattacctgcgatagaattaaC----CCCCCCCC-----C--------A-TCAAACACTTGAACGAT---T-TATGAACTTAATTCA-GACATT-------TTGCGCTTGAGTGAAAACGCTTACTGG-TTATGAAATACCGTACGTC-TGTGA--Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|31 : caccc-TGTGAACTT----CA-GACATT-------GCGCGCTCGAA--------------GG-TTATGAAATACCGTCCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-TAGGATTATTATTACAGTTTTTAGACATA-------------
gi|32 : ----T---------------------G---------------------AT---------------------T---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ACC-T-AAGCA------TT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-A---GTGTGC--T-GCATT------TCA------TTGTAATAGTAATTCGCAGAAGGTTGTG
gi|33 : cgGTC-TGTGA--TTATTCGTATCAAA-A-AAGAAA-----AA-A-GGATAATTATTA--GTTTTTAGACATACATGTACAATGCATTTTATTACGATTAATCAG--AAATAGCATG
gi|34 : CAGTTTTTAGACATACATTTTGTA----TTTTAGTACGATTAATCAT--AAATAGCATGTCACGGT-C--AATCTA-T-----------TTAC----TTGTAAGTTCGTGAGTACGCCTA--ATA
gi|36 : AAGGTAATA--T--GA--AACGATATTCTGAAGAAGCCGAG--TTAATTTG-----GGGAATTC-----A------TT-----A------
gi|37 : ttAAGGTCATAAAT--GA--AACGAT-TTCCGAAGAAATTGAG--T---TACGCA--TGGGAATTA-----A------TTTATC-A------CA-----T---T-----TACTACACAAG--AA--T-----T-C-atcaagttgtgctacacaaaagttcatt
gi|38 : AAGGTCATA--T--GA--AACGAT-TTCCAAAGAAATTGAG--T---TCTGCA--TGGGAATTCTTTT-A------TC-----A------AGATTTAT---T-----GA----ACAAA--Aca
gi|39 : AGAATGATCTTCGA-TGATCACGG----TTTATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAG---------------------AAAGA-------C
gi|4 : atcTAAAGGTCTAA--T--GA--AACAAA--TCC------------------TTTGC------GAATTC-----A------CT-----AATCAA-GG-----T---TTATT-GA----ACAAG--GA--T-----T-CCTTTGT-TA-T--TTTTTTCTCTCAA-TG-CAAGACAAC-G-TCAA-CATAGC--TG-CT-CAA--AA-GT-GTTCGAT-CT-CAAAAATGATTTTCGA-TGGTCGCGG----CTGATCTCTCTTTGCTGA----TGACGTCAAAACGACCCACAATG---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT----AATAA-ATTATT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-AC-AGTGTTCTAT-ACATT------TAA------TCGTAAGAGTAGGCCACAAAAAGTTTTGTC--TATGTACCTTTTTCG----TGGGGA--TCCC-ACA-TTTAGAA---CAAACAAGC-T--ATG---CG-----TTTAAAATCTCCGTA--TAAGCTAGCCTAGTAG-GCCTACAT----GTT------C------CT-ACACTCGTACTCGCGTCCTCA--------------------TTATTTTCTTGTTATCGACAATAAA--ATTA--ATTTAATT-AGA-TTAATATTGTAAATAAACATTTCATTCtcaccgtgatg
gi|42 : tGTATCTCTTTCC----TAGGGA--TCCCAA-A-TTTAAAA---GAAAAA
gi|5 : GTCATA--T--GA--AAC-AAATTCCGAAGAAATTGAG--T---CCTGCA--TGCCAGTTC-----A------TT-----AATCAA-GGCTTA-T---T-----GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TCTCAA-TG-C---------G-TCAA-TACAAC--TG-AT-GAA--AA-GT-GCTCGAT-TT-CCAAAATGATTTTCGA-GGGTCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CG-----------------------------ACC--------CA-C-TAC--AATTT-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TTGTAGTAGTAGGTCGCAGAAGGTTTTGACTATATGTACCTCTTTCC----TGGGGA--TCC-------------------AAAAGC-TACATG---GG-----TTTCAAATATCCGTATTTAAACTAA-----------GTACAT----GTC------T------CT-AC------ACTC------------------A--T--A---CTCATTTTCTTGCTATTGACAATCAA--ATCA--AGCTAATTAA-A-TCAATATTGTAAAT---------ATTGT-ATA-TT------AAAAA----------G------------TATCATTCAGAAATA-AT---AATTAAT--CAGTCTTA-TATTg
gi|6 : AAGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTAAG--T---TCTGCA--TCAAGGTTT-----A------TT-----------------------------GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TTTCAA-TG-CAAGATAAT-A-TCAG-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTACAA-TGATTGCGG----CTGATCTCCCTTTGCTGA----T---------------------GACATCAAAACGGCCCACTGTGAT---------------------G---------------------T---AAA---------------------CAA---------CAGT---T---TGT-ATT----GACAA-ATTATT--------CA-C-TGC--A---T-ATC-TTTGAAAAATGC--A--AGTGTGC--T-ACATT------TAA------TCACAGTAGTAGGCCGCAGATGGTTGTGAG--TTTGTACCTCTTT-C----TGGGGA--TCCCAA-A-TTTAGAA---GGAAAAAGC-T--ATG---GGTAGCCTACCAAATCTCCCTATTTTATTAAGGCTAGT---GTGTA-AT----ATA------G------CT-AC------ACTTGCGTCCTCATTGAAAGGTATTT--AACTTTTTTTTTTTTttcttt
gi|7 : TAAAGGTCATA--T--GA--AAC-AAATCCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----AATCAA-GG-----T---TTATT-GA----ACAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT-TCTTCT-CG-CAAGACAAC-A-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--T-ACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---GAAAAAAGC-T--ATG---GG-----TTTCTAATCTCCGTA--TAAGCTAGCCGAGT---GTGTACAT----GTACATGTCT------CT-ACACTCATACTCGCGTCCTCATT-A
gi|8 : T---A--GAAT--TAA-CCTA-TATTT----CATAT-ACTCT--TAACTTTT-ATGTATG--T-CAGTCGTGT---T---TACACCA-GGGTGGGGGTTGGA------G-TAT-AAAATAATAGTCGATC--ATGACAtttt
gi|8 : cTATATAATT--A--ACGCAAATAACTTACTA------T-TAAAAAA-ACATAC----CCCCCCCCGCCCCC--------AATCAAAAC-----ACGAT---T-TGGGAACTT----CG-GACATT-------GTGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAA-CCGTGCGTCCTGTGAAATTATTCGTATCAAA-ATA-GAAA-----TA---AGATTATCATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTTTAAGTTCGCGAGTACGgcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatataattaacgcaaataacttactattaaaaaaacatacccccccccgcccccaatcaaaacacgatttgggaacttcggacattgtgggctcgaaagaaaacactgactggttatgaaaaccgtgcgtcctgtgaaattattcgtatcaaaatagaaataagattatcattacagtttttagacatattttattacgattaatcataaatagcatgccacggtcaatctatatacttttaagttcgcgagtacg
gi|9 : ctagaattaacctatatttcatatactcttaacttttatgtatgtcagtcgtgtttacaccagggtgggggttggagtataaaataatagtcgatcatgacagcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgcAAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|9 : agAGAAACCTACTA------T-TAATAA-CATATAC----CCCCCCCC-----CCCTCCCTAA-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatattaagaattgcctgttatagaaacctactattaataacatatacccccccccccctccctaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AAAATAATATTTGATCATATGGCAACTGGGTACGTAAATTTAAGGACTAGAATGAAATGCAAGGAATTTAGAAAATAACATACTATTAAAAATTAGGCAAGACCCCATTCTCCAAA
Unaligned ( gi|35 ): CTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAATCCACGAGGTCGACGATGATACGGCTTTTAATCCTTA
Unaligned ( gi|40 ): CTACGGCTCTCACCTTGCTGATGTCGTCAAAACCACCGTGATGTAAACATTTTGAAATTTAACAAAATTA
Unaligned ( gi|41 ): TGTGCATGTTTCTACACTCGTACTCGCGTTCTCATTATTTTCTTGTTAT
Unaligned ( gi|43 ): AATCCACGATATCCGACGATGATACGGCTTTTAATCCTT
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1111 11111 00000000000000000000000000000 111111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 1111111111111111111 11111111 111111 111111111 11111 11 111 1 444444444444444444444444 777777777777777777 111 111111 5555555555555555555 222222222 111111 11 22222222222222222222 333333 111111 1111 3333333333333333333333333333 1111111 3333333333 3333333333333 22222222222 1111
lowQualScore : 33 66 33 8888 33 444 33 0 11111 777777 22222222222222222222222222222 7777 33 77 111111111 2 4444 2 6 3 2 444 3 1 666 3 3 44 77 3 3 6 4 3 6666 2 6666 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 9999999999999999999 55555 00000000 2 5 33 444 2 2 2 33 33 2 555555 888888 1 44 4 6666 33 222222222 555 1 3 55 555 11111 33 2 22 2 0 0 333 0 9999 666666666666666666666666 444444444444444444 0 4 6 77 999 3 22 5 555 0 1 6 999999 4444444444444444444 3 333333333 66 4 4 444444 00 0 77 55555555555555555555 1 6 6 777777 8 0 99 1 1 0 444444 5 2 1 0000 5555555555555555555555555555 777 4 0 8888 4 3333333 2 4 3 55 0 7 5 5 5 0 3333333333 8888888888888 66 5 66 5 33333333333 0000 77 3 3 6 7
lowQualScore : .. .. .. .... .. ... .. . ..... ...... ............................. .... .. .. ......... . .... . . . . ... . . ... . . .. .. . . . . . .... . .... .................................................................................................................... ....... ................... ..... ........ . . .. ... . . . .. .. . ...... ...... . .. . .... .. ......... ... . . .. ... ..... .. . .. . . . ... . .... ........................ .................. . . . .. ... . .. . ... . . . ...... ................... . ......... .. . . ...... .. . .. .................... . . . ...... . . .. . . . ...... . . . .... ............................ ... . . .... . ....... . . . .. . . . . . . .......... ............. .. . .. . ........... .... .. . . . .
lowQualScore : 44 99 44 1111 44 444 44 4 66666 222222 44444444444444444444444444444 8888 44 33 555555555 9 8888 9 2 1 7 444 1 5 999 3 3 66 11 3 1 2 2 1 5555 1 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333 4444444444444444444 22222 44444444 7 3 77 777 7 7 7 77 77 7 333333 222222 0 22 6 1111 99 888888888 444 2 6 00 888 77777 44 5 22 9 9 1 999 2 4444 777777777777777777777777 888888888888888888 1 0 6 99 666 0 99 7 111 7 0 7 222222 7777777777777777777 0 888888888 99 4 4 888888 55 9 99 00000000000000000000 5 7 7 444444 0 8 22 0 4 9 444444 0 2 6 6666 0000000000000000000000000000 888 0 8 5555 0 0000000 5 0 6 00 1 6 0 0 0 5 2222222222 0000000000000 11 0 99 0 88888888888 6666 99 2 7 7 3
consensus : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTAT--AACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
Reference ( family-1431 ) : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTAT---ACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
gi|1 : TAAAGGTCATA--T--GA--AACGC--TTCGAAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----------------------------GA----ACAAG--AA--T-----T-C-TCTGT-T------TTTTT-TTTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--GG-AT-CAA--AA-GT-GGTCGAT-CT-CGAAAATGATTTTCGA-TGATCGTGC----TTTATTTCCCTATGCTG-----T---------------------G---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATC-A-AAACAA-ATTATT--------CA-C-TGT--A---T-GGC-TTTGAAAAATGCC-AC-AATGTGC--T-ACTTT------TAA------TCGTAGTAGTAGGCCTCAGAAGGTTGTGAT--TATGTACCTCTTTCC----TCGGGA--TCAC-A-A-TTTAGAA---GAAAACAGC-T--GTG---GG-----TACCAAATCTCCGTA--TA----AGCCTAAT---GTGTA-AT----GTA------G------CT-AT------ACTCGCGTCCTCGTTGAAAAGTATGTAACTTTTATTTTCTCGTTATCAACAATGAA--ATTC--AGCTAATC-A-A-TCAATTTTGTAATTAAACGTTTCATTCTGAGA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--GAA-CCTA-TATTT----CCTAT-ACTAT--ATACACTGAACGTACA--TGTA--CGTGTATACATGTACACCA--GGTGGGGGTG----T---TGTTATGAAAATAATATTTGATCAAATAACACAAATAACCTACTA------T-TAAAAAACATAGAC----CCCTCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAAC-T----AA-GATACT-------GAAGGCTCGAGAGAACACACCAACTGA-TTATGAAGAACCGTGCGTC-TGTAG--TTATTCG---------------------------------TATTACCG-TTTTAGACATA-------------TTTGATTTCGATTAATGAT--AAATGACATGCCACGGT-A--AATC---T-----------ATAC----TTATAAGTTCGTGAATATGCCTA--ATACGGC--------CGGCAATTCACGGGTTTT
gi|10 : AAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|10 : agAGAAACCTACTA------T-TAAATAACATATAC----CCCCCCCT-----CCCTAA---A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatataagaattgcctgttatagaaacctactattaaataacatatacccccccctccctaaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
gi|11 : agaattaacctatatattccataaacgctgaacgtacataagtttttaaaccaggatgggggtagggatacatgtatgaaaataatatttgatcatgacagcgtgaacgttatttaaagaactctcaatataagaattgcctgttatAAAGGTCATA--T--GA--AACCAA--CCCGAAGAAATTGAG--T---TCC-CA--TGCGAATTC-----A------TT-----AATCAA-GG-----T---TTAATTGA----ACAAA--AT--T-----C-C-TTTGT-TA-A--TTCTTT-TCTCAA-TG-CAAGATAACTG-TCAA-TACAGC--TGAAT-CAA--AA--T-GCT-GAT-CT-CGAAAATGA-TTTCGATTGAT-GCGG----CTGATCTACCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------TC--AAAACGACCCACAGTGATGTAAACCAAAA-------CAGT---T---TGT-A-T-T-AAACAA-ATTATT--------CAGC-TGC--A---TAAGCTTTTGAAAAATGCCAACAAATGTGC--T-ACATT------TAATCGTATTCGTAGTAGTAGGCCGCAGAAGTTTTGGGC--GA-GTACCT-TGTCC----TGGG----TTCC-A-A-ATTTGAA---GGAAAATGC-T--ATGCATGGT----TTCCAAATCTCCGT
gi|12 : aGTCACA--T--GA--AAC-AAATCCCGAAGAAATTTAG--T---TCTGCA--TGCAAATTT-----A------TTAATCAA------GGTTTA-T---T-----GG----ACAAG--AA--T-----TCC-TTTGT-TA-C--TTTTTT-TCTCA
gi|12 : at-ATTATT--------CA-C-TGT--A---T-AGC-TTTGAAAAATGCC-AT-AGTGCGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGTACCTTTTTCCTGCATGGGGA--TCCCAA-A-TTCAGAA---GAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattcactgtatagctttgaaaaatgccatagtgcgctacatttaatcgtagtagtaggccgcagaaggttttgactatgtacctttttcctgcatggggatcccaaattcagaagaaac
gi|13 : atgtcacatgaaacaaatcccgaagaaatttagttctgcatgcaaatttattaatcaaggtttattggacaagaattcctttgttactttttttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGTCACA--TTTGATAAAAGACATTTTGAG--AATTGAG--T---TATTCA--TAGGAATTC-----ATTTATTTT-----A------AG-----T---TATC--AA----ACAAAGCAA--T-----T-C-ATTGT-T-----TTATTT-TTTCAA----AAATATAAC---TCAATTACCAC---G-AT-CCA--AATGT-ATGGGAT-CTATGAAAATGA--TTCGG-TCGTCGCAGATATATAATCT---TTTGCTGG----T---------------------G---------------------CC---------------------G---------------------T----TT---------------------CAAAA--------AG------------ATT-TCCAACAGTCTTGTT-------------TGC--A---T-AGC-TTTGGAAAATGAG-AC-CTTGTG----------------TGA------TT------GTAGATCGC--------CAGAC--CATGTGATATTTCCC----AAGGGATTTTCC-A-A-TCTAGAA---GGAAAA--CAT--ACG---GG-----TA-CAAATCc
gi|14 : tgGGTCGTAGAGGGTTGCGAC--CATGTACCTGGTTCC----TAGGGA--TCCC-A-AATTCAGAAAAAGAAAAAAAA-T--ACG---G------TAC-AAATTTA-GTA--CAGGCCGTTCTAGTTTCATATCTATTAAAGTA------ATACGAGCA-AC------ACTCACGTCCTCA----AAAG------------GTTTTCTTGTCATCAATAATAAA--ATCT--AGATA--T-A---TTAATATTGCAAACAAACCTTTCATTCTGGAA-TA------AAAAA----------A--A---AAGAAGTATCATTCAG-AATA-AT--------------A-CCTA-TATTC----CACAT-GCT
gi|15 : AAAGTCATA--T--GA--AACGATATTTTGGAGAAATTTTG--T---TTTGCA--TCGGAATTC-----A------TT-----A------------------------A----ATAAG--AA--TCATTGT-T-TTTAT-CATA--TTTTAT-TC-AAA-TG-CAAGATAAC-G-TGAA-T-------CG-TT-CAA--AT-GT-ACCCGGT-CA-CGAAAATGATCTTCGA-TGATCgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgac
gi|15 : -C-TGC--T---T-AGC-TTCGGTAAATTAC-AC-ATTTTCC--T-ACAAC------TAA------TTGTTATTATAGGTCGCAGAAGGTTGCGAC--CATGTGCGTATTTCC----TAGGGA--TTCCGA-A-TTTAAAA---AGAAACA---T--ACG---GG-----TACccagattacccaactgtttgactctgcttagcttcggtaaattacacattttcctacaactaattgttattataggtcgcagaaggttgcgaccatgtgcgtatttcctagggattccgaatttaaaaagaaacatacgggtaca
gi|16 : aaagtcatatgaaacgatattttggagaaattttgttttgcatcggaattcattaaataagaatcattgtttttatcatattttattcaaatgcaagataacgtgaatcgttcaaatgtacccggtcacgaaaatgatcttcgatgatcccagattacccaactgtttgactCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTG-TGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--TAACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---G-AAAAAGC-T--ATG---GG-----TTTCTAATCT-CGTA---AAGCTAGCCGAGT---GTGTACAT----GTC------T------CT-ACACTCATACTCGCG-CCTCATT-Aa
gi|17 : A---------------------CAAAA-------CACT---T---CGT-ATT----AACAA-ATTATT--------CA-C-TGC--A---T-TGC-TTTGGAAAATGCC-AC-AATGTGT--A-ACATT------Tttttctttttattct
gi|18 : tatgaaacgatttccgaaaaaaaaaaaaagaattatgcatggaaattttatttatcaagatttattcaagaagaatttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTG---GG-----TACCAAATATCAGTA--TGA---AACCTAAT---ATGTA-AT----GTA------G------AT-AC------ACTCATGTCCTCACTGAAAAGTATGGAACTTTTATTTTCTTATTATC-ACTGTTCGTTATCTTTGTCT--TT-A-AATCAATATTCTAAATAAACCTTTCATTCTGACATTT------AAAAAATCTAGAAGTATCATTTAGAAATTATCATTCAGAAATA------A--TAAT--TCA-CATA-TAGTC----CATAT-ACTATAAAAACACTGAACGT--------A--CGAGT-TATC--TAGA--GGGGGTGGGGGTG
gi|19 : C-----C--------A-CCAAATC-----ATGATAAATATGTAAAC------CAAGACATTAATTGAGGAGGGCTCAAGAAAAAACA--GACTGA-TTATGAAGAACCGTGCTTC-TGTAA--CTATTCGT-TTAAATA-A-GAAAATACTTA-TAGGATTACCATTACAGTTTTAAGACATA-------------TTTTATTATGATTAATCATTAAAATGATATGCTACGGTACCAAATCTAGTAGATTTGGGCAATACGTGTTTGTAAGTTCGTGAATATGCCTA--ATACGTCTTCATCATTGGGAA-TCACGGGTTTTcgttgtaa
gi|2 : AAAGGTCATA--TAAGA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGAAATTGCAAATTC-----A------TT-----AAATCAAGG-----T---TTATT-GA----ACAAG--AAATT-----C-C-TTTGTCTA-A--TTTTTT-TCTCAAATG-CAAGATACC-GGTCAA-TGCAGC--TA-AT-CAAGAAA-GT-GCTCGAT-TT-CGAAAATGATTTTCGA-TGATCGCGG----CGAATCTCT-TTTGCTGACAAAT---------------------G---------------------ACGTCCAAAAGACCCACAGTAATG---------------------T---AAA---------------------AAAAAAAAAAACCAGT---AAGAGGT-ATT-T-AA-CAA-ATTATTTCATTATTCA-C-TGC--A---T-AGC-TTTGAAAAATGCC-A---GTTTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGAAGAAGGTTTTGAC--TAAGTACCTGTTTCC----TGGGGA--TCCC-A-------GAA---GAAAAAGGC-T--ATA----------TAGTAGAGGTC--TA--TAAGCTAGCCTAAC---ATGTCTCT----GTA------CA-----CTCGT------GCTCGCGTCCTCATT-A-----------------TGTTCTTGTTATCGACAATCAG--ATCC--AGCTAATT-A-AATTAATATTGTAAATAAACCTTTCAATCCGACA-TT------AAAAA----------A--ATTTGTGAAGTATCATTTAGAAAT
gi|20 : CACAAAAAACATGTAA------T---AAAAATATAGAA----GACCCCAC-----C-----------CAAA------------------------TT----TA-GACATT-------TCGGGCGTGCGAAGAAGCAATAAATGGATTATGAAGAACCGTGAGTT-TGTGG--Tt
gi|21 : attcagaataatacctatattccacatgctgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgacagcgggtacgtaaaataaagacctaagtaaatgcattacctgctgaagaattaacGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTGAG--T---TATGCA--TGGAATTTC-----A------TTTATAAA------GA-----TTTAT-----GAT---ACAAG--AA--T-----T-CATTTG---A-A--TTTTTT---TTAA-TG-CGAGA-AAC-G-TCGG----------------AA--A--------TGAT-CT-------------TCGG-TGATCGCGT----CTTATCTCCCATTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAA---------------------AAAGA-------C
gi|21 : --------CA-T-TGCTGA---T-GAC-GTCAAAAAGACCC-AC-A-TGTGC--T-GCATT-------AA------TCGTAGTAGTAGGccacatgtgctgcattaatcgtagtagtagg
gi|22 : ggtcatatgaaacgatttccgaagaaattgagttatgcatggaatttcatttataaagatttatgatacaagaattcatttgaattttttttaatgcgagaaacgtcggaaatgatcttcggtgatcgcgtcttatctccACACAAAAAACATGTAA------T-TAAAATATAGAAGG----CACCCCAC-----C--------A--------------CAAT---T----AAACTT----TA-GACATC-------TCGGGCGTGCGAAGAAGCAATAAATGG-TTATGAAGAACCGTGAGTT-TGTGG--T
gi|23 : aaacaatatttgatcttatgacagcgggtacgtaaaataaacaactataaagtaaatgcattacctgctgaagaattaaATCGCGG----CTTATTTCCGTTTGATAA----A---------------------G---------------------AC---------------------GTCAAAAATACCCATTGTGATAT---AAA---------------------CAAAAA------CAGT---T---TGT-ATT----AACAA-AGTATT--------TA-C-TGC--A---T-ATC-TTTGAAAAATGCC-AC-AGTGAGC--T-ACAGG------TAA------TCGTAGTAGTAGGTCGCAGAAGTTTGTGAC--CATGTACATCTTCTC----AAGGGA--TC
gi|24 : TAT----CTTTTATCTTCTCAT-ATCAATAAT-AA--ATCC--AG---ATC-A-A-TTCATATTGTAAAAAATCCTTTCATTCTGAAA-TTCATAGAAGAAA----------ATTAATT--AAAT--TCAT---GAAATGCATTGAA--TAATAATGA-CCTATTATTC----CATATCACTAT--
gi|25 : agagcaga-----T---T-----AA----ACAAG--AA--T-----T-T-AATTT-TA-AAATATTTT-TTTAAAATG-CAAGA---------AA-T--------G-AT-GAA--GATGTTACTCGATGCA-C-ACAATGG-----GG-T--TCGTAA----CTTATCTCCC-TTGCTGA----T---------------------G----------------------C---------------------G---------------------TCCAAAA---------------------CGAAC-------CA-----C---TGT-GCTGT-AAACAA-catacttaact
gi|26 : gaattgcaataattaagctgtaAAGGTGATA--T--GA--AACGAT-TTCCGAAAAAAAAAAGAAT---TATGCA--TGGGAATTTTATTTA------TC-----A------AGATTTAT---T-----CA----AGAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT----CAA-TG-CAAGATAAC-G-TCAG-TACAGCNTTG-ATATGA--AA-------CGAT-TTCCGAAAcaaa
gi|27 : TACAGTTTTTAGACATA-------------TTTTATTACGATTTATCAT--ACGTAGCATGTCACGGT-C--AATCTA-T-----------AAAC----TTGTAAGTTCGTGGGTACGCCTG--ATAAGGCTTCATCGTC-GGAATTCACGGGTTTT
gi|28 : GGTCATA--T--GA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGCA--TGCCAATTC-----A------TTAATCAA------GGTTTA-T---T-----GA----ACAAG--AAATT-----C-C-TTCGT-TA-A---TTTTT-TCTCCA-TGCCAAGATAAC-G-TCAA-TAC
gi|3 : AA-CCTA-TATTTTCGTCATTT--C--------CGCTGAACGTACATTT-TA--CGTGT-TAT-----AACCAGGGGTGGAGGTGGTG------G-TATG------ATATTTGATC--ATGACAGCGGGAACGT--TA------TCTAAAGAAC
gi|3 : ACGCAAATACCCTACTAGTACTAT-TACAAAATATATACACCCCCCCTCCC-----C--------AATCAAACACTTGAACGAT---T-TGTGAACTT----CA-GACATT-------GCGCGCTCGAAAGAAAACACTGACTGG-TTATGAAATACCGTACGTC-TGTGA--TTACTCATATCAAA-A-A-GAAA-----TA---GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTATGATTAATCAG--AAATAGCATGCCAAGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCATGAGTACGCCTAATATACGGCTTCtaatgtaaagaattacctgcgatagaattaaacgcaaataccctactagtactattacaaaatatatacaccccccctccccaatcaaacacttgaacgatttgtgaacttcagacattgcgcgctcgaaagaaaacactgactggttatgaaataccgtacgtctgtgattactcatatcaaaaagaaataggattattattacagtttttagacatattttattatgattaatcagaaatagcatgccaaggtcaatctatatacttgtaagttcatgagtacgcctaatatacggcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|30 : aacctatattttcgtcatttccgctgaacgtacattttacgtgttataaccaggggtggaggtggtggtatgatatttgatcatgacagcgggaacgttatctaaagaactaatgtaaagaattacctgcgatagaattaaC----CCCCCCCC-----C--------A-TCAAACACTTGAACGAT---T-TATGAACTTAATTCA-GACATT-------TTGCGCTTGAGTGAAAACGCTTACTGG-TTATGAAATACCGTACGTC-TGTGA--Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|31 : caccc-TGTGAACTT----CA-GACATT-------GCGCGCTCGAA--------------GG-TTATGAAATACCGTCCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-TAGGATTATTATTACAGTTTTTAGACATA-------------
gi|32 : ----T---------------------G---------------------AT---------------------T---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ACC-T-AAGCA------TT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-A---GTGTGC--T-GCATT------TCA------TTGTAATAGTAATTCGCAGAAGGTTGTG
gi|33 : cgGTC-TGTGA--TTATTCGTATCAAA-A-AAGAAA-----AA-A-GGATAATTATTA--GTTTTTAGACATACATGTACAATGCATTTTATTACGATTAATCAG--AAATAGCATG
gi|34 : CAGTTTTTAGACATACATTTTGTA----TTTTAGTACGATTAATCAT--AAATAGCATGTCACGGT-C--AATCTA-T-----------TTAC----TTGTAAGTTCGTGAGTACGCCTA--ATA
gi|36 : AAGGTAATA--T--GA--AACGATATTCTGAAGAAGCCGAG--TTAATTTG-----GGGAATTC-----A------TT-----A------
gi|37 : ttAAGGTCATAAAT--GA--AACGAT-TTCCGAAGAAATTGAG--T---TACGCA--TGGGAATTA-----A------TTTATC-A------CA-----T---T-----TACTACACAAG--AA--T-----T-C-atcaagttgtgctacacaaaagttcatt
gi|38 : AAGGTCATA--T--GA--AACGAT-TTCCAAAGAAATTGAG--T---TCTGCA--TGGGAATTCTTTT-A------TC-----A------AGATTTAT---T-----GA----ACAAA--Aca
gi|39 : AGAATGATCTTCGA-TGATCACGG----TTTATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAG---------------------AAAGA-------C
gi|4 : atcTAAAGGTCTAA--T--GA--AACAAA--TCC------------------TTTGC------GAATTC-----A------CT-----AATCAA-GG-----T---TTATT-GA----ACAAG--GA--T-----T-CCTTTGT-TA-T--TTTTTTCTCTCAA-TG-CAAGACAAC-G-TCAA-CATAGC--TG-CT-CAA--AA-GT-GTTCGAT-CT-CAAAAATGATTTTCGA-TGGTCGCGG----CTGATCTCTCTTTGCTGA----TGACGTCAAAACGACCCACAATG---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT----AATAA-ATTATT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-AC-AGTGTTCTAT-ACATT------TAA------TCGTAAGAGTAGGCCACAAAAAGTTTTGTC--TATGTACCTTTTTCG----TGGGGA--TCCC-ACA-TTTAGAA---CAAACAAGC-T--ATG---CG-----TTTAAAATCTCCGTA--TAAGCTAGCCTAGTAG-GCCTACAT----GTT------C------CT-ACACTCGTACTCGCGTCCTCA------------------TTATTTTCTTGTTATCGACAATAAA--ATTA--ATTTAATT-AGA-TTAATATTGTAAATAAACATTTCATTCtcaccgtgatg
gi|42 : tGTATCTCTTTCC----TAGGGA--TCCCAA-A-TTTAAAA---GAAAAA
gi|5 : GTCATA--T--GA--AAC-AAATTCCGAAGAAATTGAG--T---CCTGCA--TGCCAGTTC-----A------TT-----AATCAA-GGCTTA-T---T-----GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TCTCAA-TG-C---------G-TCAA-TACAAC--TG-AT-GAA--AA-GT-GCTCGAT-TT-CCAAAATGATTTTCGA-GGGTCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CG-----------------------------ACC--------CA-C-TAC--AATTT-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TTGTAGTAGTAGGTCGCAGAAGGTTTTGACTATATGTACCTCTTTCC----TGGGGA--TCC-------------------AAAAGC-TACATG---GG-----TTTCAAATATCCGTATTTAAACTAA-----------GTACAT----GTC------T------CT-AC------ACTC------------------AT---AC--TCATTTTCTTGCTATTGACAATCAA--ATCA--AGCTAATTAA-A-TCAATATTGTAAAT---------ATTGT-ATA-TT------AAAAA----------G------------TATCATTCAGAAATA-AT---AATTAAT--CAGTCTTA-TATTg
gi|6 : AAGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTAAG--T---TCTGCA--TCAAGGTTT-----A------TT-----------------------------GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TTTCAA-TG-CAAGATAAT-A-TCAG-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTACAA-TGATTGCGG----CTGATCTCCCTTTGCTGA----T---------------------GACATCAAAACGGCCCACTGTGAT---------------------G---------------------T---AAA---------------------CAA---------CAGT---T---TGT-ATT----GACAA-ATTATT--------CA-C-TGC--A---T-ATC-TTTGAAAAATGC--A--AGTGTGC--T-ACATT------TAA------TCACAGTAGTAGGCCGCAGATGGTTGTGAG--TTTGTACCTCTTT-C----TGGGGA--TCCCAA-A-TTTAGAA---GGAAAAAGC-T--ATG---GGTAGCCTACCAAATCTCCCTATTTTATTAAGGCTAGT---GTGTA-AT----ATA------G------CT-AC------ACTTGCGTCCTCATTGAAAGGTATTTAACTTTTTTTTTTTTttcttt
gi|7 : TAAAGGTCATA--T--GA--AAC-AAATCCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----AATCAA-GG-----T---TTATT-GA----ACAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT-TCTTCT-CG-CAAGACAAC-A-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--T-ACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---GAAAAAAGC-T--ATG---GG-----TTTCTAATCTCCGTA--TAAGCTAGCCGAGT---GTGTACAT----GTACATGTCT------CT-ACACTCATACTCGCGTCCTCATT-A
gi|8 : T---A--GAAT--TAA-CCTA-TATTT----CATAT-ACTCT--TAACTTTT-ATGTATG--T-CAGTCGTGT---T---TACACCA-GGGTGGGGGTTGGA------G-TAT-AAAATAATAGTCGATC--ATGACAtttt
gi|8 : cTATATAATT--A--ACGCAAATAACTTACTA------T-TAAAAAA-ACATAC----CCCCCCCCGCCCCC--------AATCAAAAC-----ACGAT---T-TGGGAACTT----CG-GACATT-------GTGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAA-CCGTGCGTCCTGTGAAATTATTCGTATCAAA-ATA-GAAA-----TA---AGATTATCATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTTTAAGTTCGCGAGTACGgcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatataattaacgcaaataacttactattaaaaaaacatacccccccccgcccccaatcaaaacacgatttgggaacttcggacattgtgggctcgaaagaaaacactgactggttatgaaaaccgtgcgtcctgtgaaattattcgtatcaaaatagaaataagattatcattacagtttttagacatattttattacgattaatcataaatagcatgccacggtcaatctatatacttttaagttcgcgagtacg
gi|9 : ctagaattaacctatatttcatatactcttaacttttatgtatgtcagtcgtgtttacaccagggtgggggttggagtataaaataatagtcgatcatgacagcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgcAAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|9 : agAGAAACCTACTA------T-TAATAA-CATATAC----CCCCCCCC-----CCCTCCCTAA-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatattaagaattgcctgttatagaaacctactattaataacatatacccccccccccctccctaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AAAATAATATTTGATCATATGGCAACTGGGTACGTAAATTTAAGGACTAGAATGAAATGCAAGGAATTTAGAAAATAACATACTATTAAAAATTAGGCAAGACCCCATTCTCCAAA
Unaligned ( gi|35 ): CTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAATCCACGAGGTCGACGATGATACGGCTTTTAATCCTTA
Unaligned ( gi|40 ): CTACGGCTCTCACCTTGCTGATGTCGTCAAAACCACCGTGATGTAAACATTTTGAAATTTAACAAAATTA
Unaligned ( gi|41 ): TGTGCATGTTTCTACACTCGTACTCGCGTTCTCATTATTTTCTTGTTAT
Unaligned ( gi|43 ): AATCCACGATATCCGACGATGATACGGCTTTTAATCCTT
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1111 11111 00000000000000000000000000000 111111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 1111111111111111111 11111111 111111 11111111 11111 11 111 1 444444444444444444444444 88888888888888888888 11111 111111 5555555555555555555 222222222 111111 11 22222222222222222222 333333 111111 1111 3333333333333333333333333333 1111111 3333333333 3333333333333 22222222222 1111
lowQualScore : 33 66 33 8888 33 444 33 0 11111 777777 22222222222222222222222222222 7777 33 77 111111111 2 4444 2 6 3 2 444 3 1 666 3 3 44 77 3 3 6 4 3 6666 2 6666 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 9999999999999999999 55555 00000000 2 5 33 444 2 2 2 33 33 2 555555 888888 1 44 4 6666 33 44444444 555 1 3 55 555 11111 33 2 22 2 0 0 333 0 9999 666666666666666666666666 00000000000000000000 0 4 6 77 999 3 22 11111 0 1 6 999999 4444444444444444444 3 333333333 66 4 4 444444 00 0 77 55555555555555555555 1 6 6 777777 8 0 99 1 1 0 444444 5 2 1 0000 5555555555555555555555555555 777 4 0 8888 4 3333333 2 4 3 55 0 7 5 5 5 0 3333333333 8888888888888 66 5 66 5 33333333333 0000 77 3 3 6 7
lowQualScore : .. .. .. .... .. ... .. . ..... ...... ............................. .... .. .. ......... . .... . . . . ... . . ... . . .. .. . . . . . .... . .... .................................................................................................................... ....... ................... ..... ........ . . .. ... . . . .. .. . ...... ...... . .. . .... .. ........ ... . . .. ... ..... .. . .. . . . ... . .... ........................ .................... . . . .. ... . .. ..... . . . ...... ................... . ......... .. . . ...... .. . .. .................... . . . ...... . . .. . . . ...... . . . .... ............................ ... . . .... . ....... . . . .. . . . . . . .......... ............. .. . .. . ........... .... .. . . . .
lowQualScore : 44 99 44 1111 44 444 44 4 66666 222222 44444444444444444444444444444 8888 44 33 555555555 9 8888 9 2 1 7 444 1 5 999 3 3 66 11 3 1 2 2 1 5555 1 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333 4444444444444444444 22222 44444444 7 3 77 777 7 7 7 77 77 7 333333 222222 0 22 6 1111 99 22222222 444 2 6 00 888 77777 44 5 22 9 9 1 999 2 4444 777777777777777777777777 77777777777777777777 1 0 6 99 666 0 99 99999 7 0 7 222222 7777777777777777777 0 888888888 99 4 4 888888 55 9 99 00000000000000000000 5 7 7 444444 0 8 22 0 4 9 444444 0 2 6 6666 0000000000000000000000000000 888 0 8 5555 0 0000000 5 0 6 00 1 6 0 0 0 5 2222222222 0000000000000 11 0 99 0 88888888888 6666 99 2 7 7 3
consensus : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTA--T--A-CTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
Reference ( family-1431 ) : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTA--T--AACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
gi|1 : TAAAGGTCATA--T--GA--AACGC--TTCGAAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----------------------------GA----ACAAG--AA--T-----T-C-TCTGT-T------TTTTT-TTTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--GG-AT-CAA--AA-GT-GGTCGAT-CT-CGAAAATGATTTTCGA-TGATCGTGC----TTTATTTCCCTATGCTG-----T---------------------G---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATC-A-AAACAA-ATTATT--------CA-C-TGT--A---T-GGC-TTTGAAAAATGCC-AC-AATGTGC--T-ACTTT------TAA------TCGTAGTAGTAGGCCTCAGAAGGTTGTGAT--TATGTACCTCTTTCC----TCGGGA--TCAC-A-A-TTTAGAA---GAAAACAGC-T--GTG---GG-----TACCAAATCTCCGTA--TA----AGCCTAAT---GTGTA-AT----GTA------G------CT-AT------ACTCGCGTCCTCGTTGAAAAGTATGT--AACTTTTATTTTCTCGTTATCAACAATGAA--ATTC--AGCTAATC-A-A-TCAATTTTGTAATTAAACGTTTCATTCTGAGA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--GAA-CCTA-TATTT----CCTAT-ACTAT--ATACACTGAACGTACA--TGTA--CGTGTATACATGTACACCA--GGTGGGGGTG----T---TGTTATGAAAATAATATTTGATCAAATAACACAAATAACCTACTA------T-TAAAAAACATAGAC----CCCTCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAAC-T----AA-GATACT-------GAAGGCTCGAGAGAACACACCAACTGA-TTATGAAGAACCGTGCGTC-TGTAG--TTATTCG---------------------------------TATTACCG-TTTTAGACATA-------------TTTGATTTCGATTAATGAT--AAATGACATGCCACGGT-A--AATC---T-----------ATAC----TTATAAGTTCGTGAATATGCCTA--ATACGGC--------CGGCAATTCACGGGTTTT
gi|10 : AAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|10 : agAGAAACCTACTA------T-TAAATAACATATAC----CCCCCCCT-----CCCTAA---A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatataagaattgcctgttatagaaacctactattaaataacatatacccccccctccctaaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
gi|11 : agaattaacctatatattccataaacgctgaacgtacataagtttttaaaccaggatgggggtagggatacatgtatgaaaataatatttgatcatgacagcgtgaacgttatttaaagaactctcaatataagaattgcctgttatAAAGGTCATA--T--GA--AACCAA--CCCGAAGAAATTGAG--T---TCC-CA--TGCGAATTC-----A------TT-----AATCAA-GG-----T---TTAATTGA----ACAAA--AT--T-----C-C-TTTGT-TA-A--TTCTTT-TCTCAA-TG-CAAGATAACTG-TCAA-TACAGC--TGAAT-CAA--AA--T-GCT-GAT-CT-CGAAAATGA-TTTCGATTGAT-GCGG----CTGATCTACCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------TC--AAAACGACCCACAGTGATGTAAACCAAAA-------CAGT---T---TGT-A-T-T-AAACAA-ATTATT--------CAGC-TGC--A---TAAGCTTTTGAAAAATGCCAACAAATGTGC--T-ACATT------TAATCGTATTCGTAGTAGTAGGCCGCAGAAGTTTTGGGC--GA-GTACCT-TGTCC----TGGG----TTCC-A-A-ATTTGAA---GGAAAATGC-T--ATGCATGGT----TTCCAAATCTCCGT
gi|12 : aGTCACA--T--GA--AAC-AAATCCCGAAGAAATTTAG--T---TCTGCA--TGCAAATTT-----A------TTAATCAA------GGTTTA-T---T-----GG----ACAAG--AA--T-----TCC-TTTGT-TA-C--TTTTTT-TCTCA
gi|12 : at-ATTATT--------CA-C-TGT--A---T-AGC-TTTGAAAAATGCC-AT-AGTGCGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGTACCTTTTTCCTGCATGGGGA--TCCCAA-A-TTCAGAA---GAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattcactgtatagctttgaaaaatgccatagtgcgctacatttaatcgtagtagtaggccgcagaaggttttgactatgtacctttttcctgcatggggatcccaaattcagaagaaac
gi|13 : atgtcacatgaaacaaatcccgaagaaatttagttctgcatgcaaatttattaatcaaggtttattggacaagaattcctttgttactttttttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGTCACA--TTTGATAAAAGACATTTTGAG--AATTGAG--T---TATTCA--TAGGAATTC-----ATTTATTTT-----A------AG-----T---TATC--AA----ACAAAGCAA--T-----T-C-ATTGT-T-----TTATTT-TTTCAA----AAATATAAC---TCAATTACCAC---G-AT-CCA--AATGT-ATGGGAT-CTATGAAAATGA--TTCGG-TCGTCGCAGATATATAATCT---TTTGCTGG----T---------------------G---------------------CC---------------------G---------------------T----TT---------------------CAAAA--------AG------------ATT-TCCAACAGTCTTGTT-------------TGC--A---T-AGC-TTTGGAAAATGAG-AC-CTTGTG----------------TGA------TT------GTAGATCGC--------CAGAC--CATGTGATATTTCCC----AAGGGATTTTCC-A-A-TCTAGAA---GGAAAA--CAT--ACG---GG-----TA-CAAATCc
gi|14 : tgGGTCGTAGAGGGTTGCGAC--CATGTACCTGGTTCC----TAGGGA--TCCC-A-AATTCAGAAAAAGAAAAAAAA-T--ACG---G------TAC-AAATTTA-GTA--CAGGCCGTTCTAGTTTCATATCTATTAAAGTA------ATACGAGCA-AC------ACTCACGTCCTCA----AAAG--------------GTTTTCTTGTCATCAATAATAAA--ATCT--AGATA--T-A---TTAATATTGCAAACAAACCTTTCATTCTGGAA-TA------AAAAA----------A--A---AAGAAGTATCATTCAG-AATA-AT--------------A-CCTA-TATTC----CACAT-GCT
gi|15 : AAAGTCATA--T--GA--AACGATATTTTGGAGAAATTTTG--T---TTTGCA--TCGGAATTC-----A------TT-----A------------------------A----ATAAG--AA--TCATTGT-T-TTTAT-CATA--TTTTAT-TC-AAA-TG-CAAGATAAC-G-TGAA-T-------CG-TT-CAA--AT-GT-ACCCGGT-CA-CGAAAATGATCTTCGA-TGATCgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgac
gi|15 : -C-TGC--T---T-AGC-TTCGGTAAATTAC-AC-ATTTTCC--T-ACAAC------TAA------TTGTTATTATAGGTCGCAGAAGGTTGCGAC--CATGTGCGTATTTCC----TAGGGA--TTCCGA-A-TTTAAAA---AGAAACA---T--ACG---GG-----TACccagattacccaactgtttgactctgcttagcttcggtaaattacacattttcctacaactaattgttattataggtcgcagaaggttgcgaccatgtgcgtatttcctagggattccgaatttaaaaagaaacatacgggtaca
gi|16 : aaagtcatatgaaacgatattttggagaaattttgttttgcatcggaattcattaaataagaatcattgtttttatcatattttattcaaatgcaagataacgtgaatcgttcaaatgtacccggtcacgaaaatgatcttcgatgatcccagattacccaactgtttgactCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTG-TGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--TAACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---G-AAAAAGC-T--ATG---GG-----TTTCTAATCT-CGTA---AAGCTAGCCGAGT---GTGTACAT----GTC------T------CT-ACACTCATACTCGCG-CCTCATT-Aa
gi|17 : A---------------------CAAAA-------CACT---T---CGT-ATT----AACAA-ATTATT--------CA-C-TGC--A---T-TGC-TTTGGAAAATGCC-AC-AATGTGT--A-ACATT------Tttttctttttattct
gi|18 : tatgaaacgatttccgaaaaaaaaaaaaagaattatgcatggaaattttatttatcaagatttattcaagaagaatttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTG---GG-----TACCAAATATCAGTA--TGA---AACCTAAT---ATGTA-AT----GTA------G------AT-AC------ACTCATGTCCTCACTGAAAAGTA--TGGAACTTTTATTTTCTTATTATC-ACTGTTCGTTATCTTTGTCT--TT-A-AATCAATATTCTAAATAAACCTTTCATTCTGACATTT------AAAAAATCTAGAAGTATCATTTAGAAATTATCATTCAGAAATA------A--TAAT--TCA-CATA-TAGTC----CATAT-ACTATAAAAACACTGAACGT--------A--CGAGT-TATC--TAGA--GGGGGTGGGGGTG
gi|19 : C-----C--------A-CCAAATC-----ATGATAAATATGTAAAC------CAAGACATTAATTGAGGAGGGCTCAAGAAAAAACA--GACTGA-TTATGAAGAACCGTGCTTC-TGTAA--CTATTCGT-TTAAATA-A-GAAAATACTTA-TAGGATTACCATTACAGTTTTAAGACATA-------------TTTTATTATGATTAATCATTAAAATGATATGCTACGGTACCAAATCTAGTAGATTTGGGCAATACGTGTTTGTAAGTTCGTGAATATGCCTA--ATACGTCTTCATCATTGGGAA-TCACGGGTTTTcgttgtaa
gi|2 : AAAGGTCATA--TAAGA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGAAATTGCAAATTC-----A------TT-----AAATCAAGG-----T---TTATT-GA----ACAAG--AAATT-----C-C-TTTGTCTA-A--TTTTTT-TCTCAAATG-CAAGATACC-GGTCAA-TGCAGC--TA-AT-CAAGAAA-GT-GCTCGAT-TT-CGAAAATGATTTTCGA-TGATCGCGG----CGAATCTCT-TTTGCTGACAAAT---------------------G---------------------ACGTCCAAAAGACCCACAGTAATG---------------------T---AAA---------------------AAAAAAAAAAACCAGT---AAGAGGT-ATT-T-AA-CAA-ATTATTTCATTATTCA-C-TGC--A---T-AGC-TTTGAAAAATGCC-A---GTTTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGAAGAAGGTTTTGAC--TAAGTACCTGTTTCC----TGGGGA--TCCC--------AGAA---GAAAAAGGC-T--AT-----A-----TAGTAGAGGTC--TA--TAAGCTAGCCTAAC---ATGTCTCT----GTAC-----A------CTCGT------GCTCGCGTCCTCA--------------------TTATGTTCTTGTTATCGACAATCAG--ATCC--AGCTAATTAA-A-TTAATATTGTAAATAAACCTTTCAATCCGACA-TT------AAAAA----------A--ATTTGTGAAGTATCATTTAGAAAT
gi|20 : CACAAAAAACATGTAA------T---AAAAATATAGAA----GACCCCAC-----C-----------CAAA------------------------TT----TA-GACATT-------TCGGGCGTGCGAAGAAGCAATAAATGGATTATGAAGAACCGTGAGTT-TGTGG--Tt
gi|21 : attcagaataatacctatattccacatgctgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgacagcgggtacgtaaaataaagacctaagtaaatgcattacctgctgaagaattaacGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTGAG--T---TATGCA--TGGAATTTC-----A------TTTATAAA------GA-----TTTAT-----GAT---ACAAG--AA--T-----T-CATTTG---A-A--TTTTTT---TTAA-TG-CGAGA-AAC-G-TCGG----------------AA--A--------TGAT-CT-------------TCGG-TGATCGCGT----CTTATCTCCCATTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAA---------------------AAAGA-------C
gi|21 : --------CA-T-TGCTGA---T-GAC-GTCAAAAAGACCC-AC-A-TGTGC--T-GCATT-------AA------TCGTAGTAGTAGGccacatgtgctgcattaatcgtagtagtagg
gi|22 : ggtcatatgaaacgatttccgaagaaattgagttatgcatggaatttcatttataaagatttatgatacaagaattcatttgaattttttttaatgcgagaaacgtcggaaatgatcttcggtgatcgcgtcttatctccACACAAAAAACATGTAA------T-TAAAATATAGAAGG----CACCCCAC-----C--------A--------------CAAT---T----AAACTT----TA-GACATC-------TCGGGCGTGCGAAGAAGCAATAAATGG-TTATGAAGAACCGTGAGTT-TGTGG--T
gi|23 : aaacaatatttgatcttatgacagcgggtacgtaaaataaacaactataaagtaaatgcattacctgctgaagaattaaATCGCGG----CTTATTTCCGTTTGATAA----A---------------------G---------------------AC---------------------GTCAAAAATACCCATTGTGATAT---AAA---------------------CAAAAA------CAGT---T---TGT-ATT----AACAA-AGTATT--------TA-C-TGC--A---T-ATC-TTTGAAAAATGCC-AC-AGTGAGC--T-ACAGG------TAA------TCGTAGTAGTAGGTCGCAGAAGTTTGTGAC--CATGTACATCTTCTC----AAGGGA--TC
gi|24 : A--T--ATCTTTTATCTTCTCAT-ATCAATAAT-AA--ATCC--AG---ATC-A-A-TTCATATTGTAAAAAATCCTTTCATTCTGAAA-TTCATAGAAGAAA----------ATTAATT--AAAT--TCAT---GAAATGCATTGAA--TAATAATGA-CCTATTATTC----CATATCACTAT--
gi|25 : agagcag-----T---T-----AA----ACAAG--AA--T-----T-T-AATTT-TA-AAATATTTT-TTTAAAATG-CAAGA---------AA-T--------G-AT-GAA--GATGTTACTCGATGCA-C-ACAATGG-----GG-T--TCGTAA----CTTATCTCCC-TTGCTGA----T---------------------G----------------------C---------------------G---------------------TCCAAAA---------------------CGAAC-------CA-----C---TGT-GCTGT-AAACAA-catacttaact
gi|26 : gaattgcaataattaagctgtaAAGGTGATA--T--GA--AACGAT-TTCCGAAAAAAAAAAGAAT---TATGCA--TGGGAATTTTATTTA------TC-----A------AGATTTAT---T-----CA----AGAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT----CAA-TG-CAAGATAAC-G-TCAG-TACAGCNTTG-ATATGA--AA-------CGAT-TTCCGAAAcaaa
gi|27 : TACAGTTTTTAGACATA-------------TTTTATTACGATTTATCAT--ACGTAGCATGTCACGGT-C--AATCTA-T-----------AAAC----TTGTAAGTTCGTGGGTACGCCTG--ATAAGGCTTCATCGTC-GGAATTCACGGGTTTT
gi|28 : GGTCATA--T--GA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGCA--TGCCAATTC-----A------TTAATCAA------GGTTTA-T---T-----GA----ACAAG--AAATT-----C-C-TTCGT-TA-A---TTTTT-TCTCCA-TGCCAAGATAAC-G-TCAA-TAC
gi|3 : AA-CCTA-TATTTTCGTCATTT--C--------CGCTGAACGTACATTT-TA--CGTGT-TAT-----AACCAGGGGTGGAGGTGGTG------G-TATG------ATATTTGATC--ATGACAGCGGGAACGT--TA------TCTAAAGAAC
gi|3 : ACGCAAATACCCTACTAGTACTAT-TACAAAATATATACACCCCCCCTCCC-----C--------AATCAAACACTTGAACGAT---T-TGTGAACTT----CA-GACATT-------GCGCGCTCGAAAGAAAACACTGACTGG-TTATGAAATACCGTACGTC-TGTGA--TTACTCATATCAAA-A-A-GAAA-----TA---GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTATGATTAATCAG--AAATAGCATGCCAAGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCATGAGTACGCCTAATATACGGCTTCtaatgtaaagaattacctgcgatagaattaaacgcaaataccctactagtactattacaaaatatatacaccccccctccccaatcaaacacttgaacgatttgtgaacttcagacattgcgcgctcgaaagaaaacactgactggttatgaaataccgtacgtctgtgattactcatatcaaaaagaaataggattattattacagtttttagacatattttattatgattaatcagaaatagcatgccaaggtcaatctatatacttgtaagttcatgagtacgcctaatatacggcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|30 : aacctatattttcgtcatttccgctgaacgtacattttacgtgttataaccaggggtggaggtggtggtatgatatttgatcatgacagcgggaacgttatctaaagaactaatgtaaagaattacctgcgatagaattaaC----CCCCCCCC-----C--------A-TCAAACACTTGAACGAT---T-TATGAACTTAATTCA-GACATT-------TTGCGCTTGAGTGAAAACGCTTACTGG-TTATGAAATACCGTACGTC-TGTGA--Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|31 : caccc-TGTGAACTT----CA-GACATT-------GCGCGCTCGAA--------------GG-TTATGAAATACCGTCCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-TAGGATTATTATTACAGTTTTTAGACATA-------------
gi|32 : ----T---------------------G---------------------AT---------------------T---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ACC-T-AAGCA------TT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-A---GTGTGC--T-GCATT------TCA------TTGTAATAGTAATTCGCAGAAGGTTGTG
gi|33 : cgGTC-TGTGA--TTATTCGTATCAAA-A-AAGAAA-----AA-A-GGATAATTATTA--GTTTTTAGACATACATGTACAATGCATTTTATTACGATTAATCAG--AAATAGCATG
gi|34 : CAGTTTTTAGACATACATTTTGTA----TTTTAGTACGATTAATCAT--AAATAGCATGTCACGGT-C--AATCTA-T-----------TTAC----TTGTAAGTTCGTGAGTACGCCTA--ATA
gi|36 : AAGGTAATA--T--GA--AACGATATTCTGAAGAAGCCGAG--TTAATTTG-----GGGAATTC-----A------TT-----A------
gi|37 : ttAAGGTCATAAAT--GA--AACGAT-TTCCGAAGAAATTGAG--T---TACGCA--TGGGAATTA-----A------TTTATC-A------CA-----T---T-----TACTACACAAG--AA--T-----T-C-atcaagttgtgctacacaaaagttcatt
gi|38 : AAGGTCATA--T--GA--AACGAT-TTCCAAAGAAATTGAG--T---TCTGCA--TGGGAATTCTTTT-A------TC-----A------AGATTTAT---T-----GA----ACAAA--Aca
gi|39 : AGAATGATCTTCGA-TGATCACGG----TTTATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAG---------------------AAAGA-------C
gi|4 : atcTAAAGGTCTAA--T--GA--AACAAA--TCC------------------TTTGC------GAATTC-----A------CT-----AATCAA-GG-----T---TTATT-GA----ACAAG--GA--T-----T-CCTTTGT-TA-T--TTTTTTCTCTCAA-TG-CAAGACAAC-G-TCAA-CATAGC--TG-CT-CAA--AA-GT-GTTCGAT-CT-CAAAAATGATTTTCGA-TGGTCGCGG----CTGATCTCTCTTTGCTGA----TGACGTCAAAACGACCCACAATG---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT----AATAA-ATTATT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-AC-AGTGTTCTAT-ACATT------TAA------TCGTAAGAGTAGGCCACAAAAAGTTTTGTC--TATGTACCTTTTTCG----TGGGGA--TCCC-ACA-TTTAGAA---CAAACAAGC-T--ATG---CG-----TTTAAAATCTCCGTA--TAAGCTAGCCTAGTAG-GCCTACAT----GTT------C------CT-ACACTCGTACTCGCGTCCTCA--------------------TTATTTTCTTGTTATCGACAATAAA--ATTA--ATTTAATT-AGA-TTAATATTGTAAATAAACATTTCATTCtcaccgtgatg
gi|42 : tGTATCTCTTTCC----TAGGGA--TCCCAA-A-TTTAAAA---GAAAAA
gi|5 : GTCATA--T--GA--AAC-AAATTCCGAAGAAATTGAG--T---CCTGCA--TGCCAGTTC-----A------TT-----AATCAA-GGCTTA-T---T-----GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TCTCAA-TG-C---------G-TCAA-TACAAC--TG-AT-GAA--AA-GT-GCTCGAT-TT-CCAAAATGATTTTCGA-GGGTCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CG-----------------------------ACC--------CA-C-TAC--AATTT-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TTGTAGTAGTAGGTCGCAGAAGGTTTTGACTATATGTACCTCTTTCC----TGGGGA--TCC-------------------AAAAGC-TACATG---GG-----TTTCAAATATCCGTATTTAAACTAA-----------GTACAT----GTC------T------CT-AC------ACTC------------------A--T--A---CTCATTTTCTTGCTATTGACAATCAA--ATCA--AGCTAATTAA-A-TCAATATTGTAAAT---------ATTGT-ATA-TT------AAAAA----------G------------TATCATTCAGAAATA-AT---AATTAAT--CAGTCTTA-TATTg
gi|6 : AAGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTAAG--T---TCTGCA--TCAAGGTTT-----A------TT-----------------------------GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TTTCAA-TG-CAAGATAAT-A-TCAG-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTACAA-TGATTGCGG----CTGATCTCCCTTTGCTGA----T---------------------GACATCAAAACGGCCCACTGTGAT---------------------G---------------------T---AAA---------------------CAA---------CAGT---T---TGT-ATT----GACAA-ATTATT--------CA-C-TGC--A---T-ATC-TTTGAAAAATGC--A--AGTGTGC--T-ACATT------TAA------TCACAGTAGTAGGCCGCAGATGGTTGTGAG--TTTGTACCTCTTT-C----TGGGGA--TCCCAA-A-TTTAGAA---GGAAAAAGC-T--ATG---GGTAGCCTACCAAATCTCCCTATTTTATTAAGGCTAGT---GTGTA-AT----ATA------G------CT-AC------ACTTGCGTCCTCATTGAAAGGTATTT--AACTTTTTTTTTTTTttcttt
gi|7 : TAAAGGTCATA--T--GA--AAC-AAATCCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----AATCAA-GG-----T---TTATT-GA----ACAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT-TCTTCT-CG-CAAGACAAC-A-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--T-ACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---GAAAAAAGC-T--ATG---GG-----TTTCTAATCTCCGTA--TAAGCTAGCCGAGT---GTGTACAT----GTACATGTCT------CT-ACACTCATACTCGCGTCCTCATT-A
gi|8 : T---A--GAAT--TAA-CCTA-TATTT----CATAT-ACTCT--TAACTTTT-ATGTATG--T-CAGTCGTGT---T---TACACCA-GGGTGGGGGTTGGA------G-TAT-AAAATAATAGTCGATC--ATGACAtttt
gi|8 : cTATATAATT--A--ACGCAAATAACTTACTA------T-TAAAAAA-ACATAC----CCCCCCCCGCCCCC--------AATCAAAAC-----ACGAT---T-TGGGAACTT----CG-GACATT-------GTGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAA-CCGTGCGTCCTGTGAAATTATTCGTATCAAA-ATA-GAAA-----TA---AGATTATCATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTTTAAGTTCGCGAGTACGgcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatataattaacgcaaataacttactattaaaaaaacatacccccccccgcccccaatcaaaacacgatttgggaacttcggacattgtgggctcgaaagaaaacactgactggttatgaaaaccgtgcgtcctgtgaaattattcgtatcaaaatagaaataagattatcattacagtttttagacatattttattacgattaatcataaatagcatgccacggtcaatctatatacttttaagttcgcgagtacg
gi|9 : ctagaattaacctatatttcatatactcttaacttttatgtatgtcagtcgtgtttacaccagggtgggggttggagtataaaataatagtcgatcatgacagcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgcAAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|9 : agAGAAACCTACTA------T-TAATAA-CATATAC----CCCCCCCC-----CCCTCCCTAA-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatattaagaattgcctgttatagaaacctactattaataacatatacccccccccccctccctaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AAAATAATATTTGATCATATGGCAACTGGGTACGTAAATTTAAGGACTAGAATGAAATGCAAGGAATTTAGAAAATAACATACTATTAAAAATTAGGCAAGACCCCATTCTCCAAA
Unaligned ( gi|35 ): CTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAATCCACGAGGTCGACGATGATACGGCTTTTAATCCTTA
Unaligned ( gi|40 ): CTACGGCTCTCACCTTGCTGATGTCGTCAAAACCACCGTGATGTAAACATTTTGAAATTTAACAAAATTA
Unaligned ( gi|41 ): TGTGCATGTTTCTACACTCGTACTCGCGTTCTCATTATTTTCTTGTTAT
Unaligned ( gi|43 ): AATCCACGATATCCGACGATGATACGGCTTTTAATCCTT
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1111 11111 00000000000000000000000000000 111111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 1111111111111111111 11111111 111111 111111111 11111 11 111 1 444444444444444444444444 777777777777777777 111 111111 5555555555555555555 222222222 111111 11 22222222222222222222 333333 111111 1111 3333333333333333333333333333 1111111 3333333333 3333333333333 22222222222 1111
lowQualScore : 33 66 33 8888 33 444 33 0 11111 777777 22222222222222222222222222222 7777 33 77 111111111 2 4444 2 6 3 2 444 3 1 666 3 3 44 77 3 3 6 4 3 6666 2 6666 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 9999999999999999999 55555 00000000 2 5 33 444 2 2 2 33 33 2 555555 888888 1 44 4 6666 33 222222222 555 1 3 55 555 11111 33 2 22 2 0 0 333 0 9999 666666666666666666666666 444444444444444444 0 4 6 77 999 3 22 5 555 0 1 6 999999 4444444444444444444 3 333333333 66 4 4 444444 00 0 77 55555555555555555555 1 6 6 777777 8 0 99 1 1 0 444444 5 2 1 0000 5555555555555555555555555555 777 4 0 8888 4 3333333 2 4 3 55 0 7 5 5 5 0 3333333333 8888888888888 66 5 66 5 33333333333 0000 77 3 3 6 7
lowQualScore : .. .. .. .... .. ... .. . ..... ...... ............................. .... .. .. ......... . .... . . . . ... . . ... . . .. .. . . . . . .... . .... .................................................................................................................... ....... ................... ..... ........ . . .. ... . . . .. .. . ...... ...... . .. . .... .. ......... ... . . .. ... ..... .. . .. . . . ... . .... ........................ .................. . . . .. ... . .. . ... . . . ...... ................... . ......... .. . . ...... .. . .. .................... . . . ...... . . .. . . . ...... . . . .... ............................ ... . . .... . ....... . . . .. . . . . . . .......... ............. .. . .. . ........... .... .. . . . .
lowQualScore : 44 99 44 1111 44 444 44 4 66666 222222 44444444444444444444444444444 8888 44 33 555555555 9 8888 9 2 1 7 444 1 5 999 3 3 66 11 3 1 2 2 1 5555 1 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333 4444444444444444444 22222 44444444 7 3 77 777 7 7 7 77 77 7 333333 222222 0 22 6 1111 99 888888888 444 2 6 00 888 77777 44 5 22 9 9 1 999 2 4444 777777777777777777777777 888888888888888888 1 0 6 99 666 0 99 7 111 7 0 7 222222 7777777777777777777 0 888888888 99 4 4 888888 55 9 99 00000000000000000000 5 7 7 444444 0 8 22 0 4 9 444444 0 2 6 6666 0000000000000000000000000000 888 0 8 5555 0 0000000 5 0 6 00 1 6 0 0 0 5 2222222222 0000000000000 11 0 99 0 88888888888 6666 99 2 7 7 3
consensus : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTAT--AACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
Reference ( family-1431 ) : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTAT---ACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
gi|1 : TAAAGGTCATA--T--GA--AACGC--TTCGAAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----------------------------GA----ACAAG--AA--T-----T-C-TCTGT-T------TTTTT-TTTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--GG-AT-CAA--AA-GT-GGTCGAT-CT-CGAAAATGATTTTCGA-TGATCGTGC----TTTATTTCCCTATGCTG-----T---------------------G---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATC-A-AAACAA-ATTATT--------CA-C-TGT--A---T-GGC-TTTGAAAAATGCC-AC-AATGTGC--T-ACTTT------TAA------TCGTAGTAGTAGGCCTCAGAAGGTTGTGAT--TATGTACCTCTTTCC----TCGGGA--TCAC-A-A-TTTAGAA---GAAAACAGC-T--GTG---GG-----TACCAAATCTCCGTA--TA----AGCCTAAT---GTGTA-AT----GTA------G------CT-AT------ACTCGCGTCCTCGTTGAAAAGTATGTAACTTTTATTTTCTCGTTATCAACAATGAA--ATTC--AGCTAATC-A-A-TCAATTTTGTAATTAAACGTTTCATTCTGAGA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--GAA-CCTA-TATTT----CCTAT-ACTAT--ATACACTGAACGTACA--TGTA--CGTGTATACATGTACACCA--GGTGGGGGTG----T---TGTTATGAAAATAATATTTGATCAAATAACACAAATAACCTACTA------T-TAAAAAACATAGAC----CCCTCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAAC-T----AA-GATACT-------GAAGGCTCGAGAGAACACACCAACTGA-TTATGAAGAACCGTGCGTC-TGTAG--TTATTCG---------------------------------TATTACCG-TTTTAGACATA-------------TTTGATTTCGATTAATGAT--AAATGACATGCCACGGT-A--AATC---T-----------ATAC----TTATAAGTTCGTGAATATGCCTA--ATACGGC--------CGGCAATTCACGGGTTTT
gi|10 : AAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|10 : agAGAAACCTACTA------T-TAAATAACATATAC----CCCCCCCT-----CCCTAA---A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatataagaattgcctgttatagaaacctactattaaataacatatacccccccctccctaaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
gi|11 : agaattaacctatatattccataaacgctgaacgtacataagtttttaaaccaggatgggggtagggatacatgtatgaaaataatatttgatcatgacagcgtgaacgttatttaaagaactctcaatataagaattgcctgttatAAAGGTCATA--T--GA--AACCAA--CCCGAAGAAATTGAG--T---TCC-CA--TGCGAATTC-----A------TT-----AATCAA-GG-----T---TTAATTGA----ACAAA--AT--T-----C-C-TTTGT-TA-A--TTCTTT-TCTCAA-TG-CAAGATAACTG-TCAA-TACAGC--TGAAT-CAA--AA--T-GCT-GAT-CT-CGAAAATGA-TTTCGATTGAT-GCGG----CTGATCTACCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------TC--AAAACGACCCACAGTGATGTAAACCAAAA-------CAGT---T---TGT-A-T-T-AAACAA-ATTATT--------CAGC-TGC--A---TAAGCTTTTGAAAAATGCCAACAAATGTGC--T-ACATT------TAATCGTATTCGTAGTAGTAGGCCGCAGAAGTTTTGGGC--GA-GTACCT-TGTCC----TGGG----TTCC-A-A-ATTTGAA---GGAAAATGC-T--ATGCATGGT----TTCCAAATCTCCGT
gi|12 : aGTCACA--T--GA--AAC-AAATCCCGAAGAAATTTAG--T---TCTGCA--TGCAAATTT-----A------TTAATCAA------GGTTTA-T---T-----GG----ACAAG--AA--T-----TCC-TTTGT-TA-C--TTTTTT-TCTCA
gi|12 : at-ATTATT--------CA-C-TGT--A---T-AGC-TTTGAAAAATGCC-AT-AGTGCGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGTACCTTTTTCCTGCATGGGGA--TCCCAA-A-TTCAGAA---GAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattcactgtatagctttgaaaaatgccatagtgcgctacatttaatcgtagtagtaggccgcagaaggttttgactatgtacctttttcctgcatggggatcccaaattcagaagaaac
gi|13 : atgtcacatgaaacaaatcccgaagaaatttagttctgcatgcaaatttattaatcaaggtttattggacaagaattcctttgttactttttttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGTCACA--TTTGATAAAAGACATTTTGAG--AATTGAG--T---TATTCA--TAGGAATTC-----ATTTATTTT-----A------AG-----T---TATC--AA----ACAAAGCAA--T-----T-C-ATTGT-T-----TTATTT-TTTCAA----AAATATAAC---TCAATTACCAC---G-AT-CCA--AATGT-ATGGGAT-CTATGAAAATGA--TTCGG-TCGTCGCAGATATATAATCT---TTTGCTGG----T---------------------G---------------------CC---------------------G---------------------T----TT---------------------CAAAA--------AG------------ATT-TCCAACAGTCTTGTT-------------TGC--A---T-AGC-TTTGGAAAATGAG-AC-CTTGTG----------------TGA------TT------GTAGATCGC--------CAGAC--CATGTGATATTTCCC----AAGGGATTTTCC-A-A-TCTAGAA---GGAAAA--CAT--ACG---GG-----TA-CAAATCc
gi|14 : tgGGTCGTAGAGGGTTGCGAC--CATGTACCTGGTTCC----TAGGGA--TCCC-A-AATTCAGAAAAAGAAAAAAAA-T--ACG---G------TAC-AAATTTA-GTA--CAGGCCGTTCTAGTTTCATATCTATTAAAGTA------ATACGAGCA-AC------ACTCACGTCCTCA----AAAG------------GTTTTCTTGTCATCAATAATAAA--ATCT--AGATA--T-A---TTAATATTGCAAACAAACCTTTCATTCTGGAA-TA------AAAAA----------A--A---AAGAAGTATCATTCAG-AATA-AT--------------A-CCTA-TATTC----CACAT-GCT
gi|15 : AAAGTCATA--T--GA--AACGATATTTTGGAGAAATTTTG--T---TTTGCA--TCGGAATTC-----A------TT-----A------------------------A----ATAAG--AA--TCATTGT-T-TTTAT-CATA--TTTTAT-TC-AAA-TG-CAAGATAAC-G-TGAA-T-------CG-TT-CAA--AT-GT-ACCCGGT-CA-CGAAAATGATCTTCGA-TGATCgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgac
gi|15 : -C-TGC--T---T-AGC-TTCGGTAAATTAC-AC-ATTTTCC--T-ACAAC------TAA------TTGTTATTATAGGTCGCAGAAGGTTGCGAC--CATGTGCGTATTTCC----TAGGGA--TTCCGA-A-TTTAAAA---AGAAACA---T--ACG---GG-----TACccagattacccaactgtttgactctgcttagcttcggtaaattacacattttcctacaactaattgttattataggtcgcagaaggttgcgaccatgtgcgtatttcctagggattccgaatttaaaaagaaacatacgggtaca
gi|16 : aaagtcatatgaaacgatattttggagaaattttgttttgcatcggaattcattaaataagaatcattgtttttatcatattttattcaaatgcaagataacgtgaatcgttcaaatgtacccggtcacgaaaatgatcttcgatgatcccagattacccaactgtttgactCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTG-TGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--TAACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---G-AAAAAGC-T--ATG---GG-----TTTCTAATCT-CGTA---AAGCTAGCCGAGT---GTGTACAT----GTC------T------CT-ACACTCATACTCGCG-CCTCATT-Aa
gi|17 : A---------------------CAAAA-------CACT---T---CGT-ATT----AACAA-ATTATT--------CA-C-TGC--A---T-TGC-TTTGGAAAATGCC-AC-AATGTGT--A-ACATT------Tttttctttttattct
gi|18 : tatgaaacgatttccgaaaaaaaaaaaaagaattatgcatggaaattttatttatcaagatttattcaagaagaatttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTG---GG-----TACCAAATATCAGTA--TGA---AACCTAAT---ATGTA-AT----GTA------G------AT-AC------ACTCATGTCCTCACTGAAAAGTATGGAACTTTTATTTTCTTATTATC-ACTGTTCGTTATCTTTGTCT--TT-A-AATCAATATTCTAAATAAACCTTTCATTCTGACATTT------AAAAAATCTAGAAGTATCATTTAGAAATTATCATTCAGAAATA------A--TAAT--TCA-CATA-TAGTC----CATAT-ACTATAAAAACACTGAACGT--------A--CGAGT-TATC--TAGA--GGGGGTGGGGGTG
gi|19 : C-----C--------A-CCAAATC-----ATGATAAATATGTAAAC------CAAGACATTAATTGAGGAGGGCTCAAGAAAAAACA--GACTGA-TTATGAAGAACCGTGCTTC-TGTAA--CTATTCGT-TTAAATA-A-GAAAATACTTA-TAGGATTACCATTACAGTTTTAAGACATA-------------TTTTATTATGATTAATCATTAAAATGATATGCTACGGTACCAAATCTAGTAGATTTGGGCAATACGTGTTTGTAAGTTCGTGAATATGCCTA--ATACGTCTTCATCATTGGGAA-TCACGGGTTTTcgttgtaa
gi|2 : AAAGGTCATA--TAAGA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGAAATTGCAAATTC-----A------TT-----AAATCAAGG-----T---TTATT-GA----ACAAG--AAATT-----C-C-TTTGTCTA-A--TTTTTT-TCTCAAATG-CAAGATACC-GGTCAA-TGCAGC--TA-AT-CAAGAAA-GT-GCTCGAT-TT-CGAAAATGATTTTCGA-TGATCGCGG----CGAATCTCT-TTTGCTGACAAAT---------------------G---------------------ACGTCCAAAAGACCCACAGTAATG---------------------T---AAA---------------------AAAAAAAAAAACCAGT---AAGAGGT-ATT-T-AA-CAA-ATTATTTCATTATTCA-C-TGC--A---T-AGC-TTTGAAAAATGCC-A---GTTTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGAAGAAGGTTTTGAC--TAAGTACCTGTTTCC----TGGGGA--TCCC-A-------GAA---GAAAAAGGC-T--ATA----------TAGTAGAGGTC--TA--TAAGCTAGCCTAAC---ATGTCTCT----GTA------CA-----CTCGT------GCTCGCGTCCTCATT-A-----------------TGTTCTTGTTATCGACAATCAG--ATCC--AGCTAATT-A-AATTAATATTGTAAATAAACCTTTCAATCCGACA-TT------AAAAA----------A--ATTTGTGAAGTATCATTTAGAAAT
gi|20 : CACAAAAAACATGTAA------T---AAAAATATAGAA----GACCCCAC-----C-----------CAAA------------------------TT----TA-GACATT-------TCGGGCGTGCGAAGAAGCAATAAATGGATTATGAAGAACCGTGAGTT-TGTGG--Tt
gi|21 : attcagaataatacctatattccacatgctgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgacagcgggtacgtaaaataaagacctaagtaaatgcattacctgctgaagaattaacGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTGAG--T---TATGCA--TGGAATTTC-----A------TTTATAAA------GA-----TTTAT-----GAT---ACAAG--AA--T-----T-CATTTG---A-A--TTTTTT---TTAA-TG-CGAGA-AAC-G-TCGG----------------AA--A--------TGAT-CT-------------TCGG-TGATCGCGT----CTTATCTCCCATTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAA---------------------AAAGA-------C
gi|21 : --------CA-T-TGCTGA---T-GAC-GTCAAAAAGACCC-AC-A-TGTGC--T-GCATT-------AA------TCGTAGTAGTAGGccacatgtgctgcattaatcgtagtagtagg
gi|22 : ggtcatatgaaacgatttccgaagaaattgagttatgcatggaatttcatttataaagatttatgatacaagaattcatttgaattttttttaatgcgagaaacgtcggaaatgatcttcggtgatcgcgtcttatctccACACAAAAAACATGTAA------T-TAAAATATAGAAGG----CACCCCAC-----C--------A--------------CAAT---T----AAACTT----TA-GACATC-------TCGGGCGTGCGAAGAAGCAATAAATGG-TTATGAAGAACCGTGAGTT-TGTGG--T
gi|23 : aaacaatatttgatcttatgacagcgggtacgtaaaataaacaactataaagtaaatgcattacctgctgaagaattaaATCGCGG----CTTATTTCCGTTTGATAA----A---------------------G---------------------AC---------------------GTCAAAAATACCCATTGTGATAT---AAA---------------------CAAAAA------CAGT---T---TGT-ATT----AACAA-AGTATT--------TA-C-TGC--A---T-ATC-TTTGAAAAATGCC-AC-AGTGAGC--T-ACAGG------TAA------TCGTAGTAGTAGGTCGCAGAAGTTTGTGAC--CATGTACATCTTCTC----AAGGGA--TC
gi|24 : TAT----CTTTTATCTTCTCAT-ATCAATAAT-AA--ATCC--AG---ATC-A-A-TTCATATTGTAAAAAATCCTTTCATTCTGAAA-TTCATAGAAGAAA----------ATTAATT--AAAT--TCAT---GAAATGCATTGAA--TAATAATGA-CCTATTATTC----CATATCACTAT--
gi|25 : agagcaga-----T---T-----AA----ACAAG--AA--T-----T-T-AATTT-TA-AAATATTTT-TTTAAAATG-CAAGA---------AA-T--------G-AT-GAA--GATGTTACTCGATGCA-C-ACAATGG-----GG-T--TCGTAA----CTTATCTCCC-TTGCTGA----T---------------------G----------------------C---------------------G---------------------TCCAAAA---------------------CGAAC-------CA-----C---TGT-GCTGT-AAACAA-catacttaact
gi|26 : gaattgcaataattaagctgtaAAGGTGATA--T--GA--AACGAT-TTCCGAAAAAAAAAAGAAT---TATGCA--TGGGAATTTTATTTA------TC-----A------AGATTTAT---T-----CA----AGAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT----CAA-TG-CAAGATAAC-G-TCAG-TACAGCNTTG-ATATGA--AA-------CGAT-TTCCGAAAcaaa
gi|27 : TACAGTTTTTAGACATA-------------TTTTATTACGATTTATCAT--ACGTAGCATGTCACGGT-C--AATCTA-T-----------AAAC----TTGTAAGTTCGTGGGTACGCCTG--ATAAGGCTTCATCGTC-GGAATTCACGGGTTTT
gi|28 : GGTCATA--T--GA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGCA--TGCCAATTC-----A------TTAATCAA------GGTTTA-T---T-----GA----ACAAG--AAATT-----C-C-TTCGT-TA-A---TTTTT-TCTCCA-TGCCAAGATAAC-G-TCAA-TAC
gi|3 : AA-CCTA-TATTTTCGTCATTT--C--------CGCTGAACGTACATTT-TA--CGTGT-TAT-----AACCAGGGGTGGAGGTGGTG------G-TATG------ATATTTGATC--ATGACAGCGGGAACGT--TA------TCTAAAGAAC
gi|3 : ACGCAAATACCCTACTAGTACTAT-TACAAAATATATACACCCCCCCTCCC-----C--------AATCAAACACTTGAACGAT---T-TGTGAACTT----CA-GACATT-------GCGCGCTCGAAAGAAAACACTGACTGG-TTATGAAATACCGTACGTC-TGTGA--TTACTCATATCAAA-A-A-GAAA-----TA---GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTATGATTAATCAG--AAATAGCATGCCAAGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCATGAGTACGCCTAATATACGGCTTCtaatgtaaagaattacctgcgatagaattaaacgcaaataccctactagtactattacaaaatatatacaccccccctccccaatcaaacacttgaacgatttgtgaacttcagacattgcgcgctcgaaagaaaacactgactggttatgaaataccgtacgtctgtgattactcatatcaaaaagaaataggattattattacagtttttagacatattttattatgattaatcagaaatagcatgccaaggtcaatctatatacttgtaagttcatgagtacgcctaatatacggcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|30 : aacctatattttcgtcatttccgctgaacgtacattttacgtgttataaccaggggtggaggtggtggtatgatatttgatcatgacagcgggaacgttatctaaagaactaatgtaaagaattacctgcgatagaattaaC----CCCCCCCC-----C--------A-TCAAACACTTGAACGAT---T-TATGAACTTAATTCA-GACATT-------TTGCGCTTGAGTGAAAACGCTTACTGG-TTATGAAATACCGTACGTC-TGTGA--Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|31 : caccc-TGTGAACTT----CA-GACATT-------GCGCGCTCGAA--------------GG-TTATGAAATACCGTCCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-TAGGATTATTATTACAGTTTTTAGACATA-------------
gi|32 : ----T---------------------G---------------------AT---------------------T---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ACC-T-AAGCA------TT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-A---GTGTGC--T-GCATT------TCA------TTGTAATAGTAATTCGCAGAAGGTTGTG
gi|33 : cgGTC-TGTGA--TTATTCGTATCAAA-A-AAGAAA-----AA-A-GGATAATTATTA--GTTTTTAGACATACATGTACAATGCATTTTATTACGATTAATCAG--AAATAGCATG
gi|34 : CAGTTTTTAGACATACATTTTGTA----TTTTAGTACGATTAATCAT--AAATAGCATGTCACGGT-C--AATCTA-T-----------TTAC----TTGTAAGTTCGTGAGTACGCCTA--ATA
gi|36 : AAGGTAATA--T--GA--AACGATATTCTGAAGAAGCCGAG--TTAATTTG-----GGGAATTC-----A------TT-----A------
gi|37 : ttAAGGTCATAAAT--GA--AACGAT-TTCCGAAGAAATTGAG--T---TACGCA--TGGGAATTA-----A------TTTATC-A------CA-----T---T-----TACTACACAAG--AA--T-----T-C-atcaagttgtgctacacaaaagttcatt
gi|38 : AAGGTCATA--T--GA--AACGAT-TTCCAAAGAAATTGAG--T---TCTGCA--TGGGAATTCTTTT-A------TC-----A------AGATTTAT---T-----GA----ACAAA--Aca
gi|39 : AGAATGATCTTCGA-TGATCACGG----TTTATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAG---------------------AAAGA-------C
gi|4 : atcTAAAGGTCTAA--T--GA--AACAAA--TCC------------------TTTGC------GAATTC-----A------CT-----AATCAA-GG-----T---TTATT-GA----ACAAG--GA--T-----T-CCTTTGT-TA-T--TTTTTTCTCTCAA-TG-CAAGACAAC-G-TCAA-CATAGC--TG-CT-CAA--AA-GT-GTTCGAT-CT-CAAAAATGATTTTCGA-TGGTCGCGG----CTGATCTCTCTTTGCTGA----TGACGTCAAAACGACCCACAATG---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT----AATAA-ATTATT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-AC-AGTGTTCTAT-ACATT------TAA------TCGTAAGAGTAGGCCACAAAAAGTTTTGTC--TATGTACCTTTTTCG----TGGGGA--TCCC-ACA-TTTAGAA---CAAACAAGC-T--ATG---CG-----TTTAAAATCTCCGTA--TAAGCTAGCCTAGTAG-GCCTACAT----GTT------C------CT-ACACTCGTACTCGCGTCCTCA------------------TTATTTTCTTGTTATCGACAATAAA--ATTA--ATTTAATT-AGA-TTAATATTGTAAATAAACATTTCATTCtcaccgtgatg
gi|42 : tGTATCTCTTTCC----TAGGGA--TCCCAA-A-TTTAAAA---GAAAAA
gi|5 : GTCATA--T--GA--AAC-AAATTCCGAAGAAATTGAG--T---CCTGCA--TGCCAGTTC-----A------TT-----AATCAA-GGCTTA-T---T-----GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TCTCAA-TG-C---------G-TCAA-TACAAC--TG-AT-GAA--AA-GT-GCTCGAT-TT-CCAAAATGATTTTCGA-GGGTCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CG-----------------------------ACC--------CA-C-TAC--AATTT-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TTGTAGTAGTAGGTCGCAGAAGGTTTTGACTATATGTACCTCTTTCC----TGGGGA--TCC-------------------AAAAGC-TACATG---GG-----TTTCAAATATCCGTATTTAAACTAA-----------GTACAT----GTC------T------CT-AC------ACTC------------------AT---AC--TCATTTTCTTGCTATTGACAATCAA--ATCA--AGCTAATTAA-A-TCAATATTGTAAAT---------ATTGT-ATA-TT------AAAAA----------G------------TATCATTCAGAAATA-AT---AATTAAT--CAGTCTTA-TATTg
gi|6 : AAGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTAAG--T---TCTGCA--TCAAGGTTT-----A------TT-----------------------------GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TTTCAA-TG-CAAGATAAT-A-TCAG-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTACAA-TGATTGCGG----CTGATCTCCCTTTGCTGA----T---------------------GACATCAAAACGGCCCACTGTGAT---------------------G---------------------T---AAA---------------------CAA---------CAGT---T---TGT-ATT----GACAA-ATTATT--------CA-C-TGC--A---T-ATC-TTTGAAAAATGC--A--AGTGTGC--T-ACATT------TAA------TCACAGTAGTAGGCCGCAGATGGTTGTGAG--TTTGTACCTCTTT-C----TGGGGA--TCCCAA-A-TTTAGAA---GGAAAAAGC-T--ATG---GGTAGCCTACCAAATCTCCCTATTTTATTAAGGCTAGT---GTGTA-AT----ATA------G------CT-AC------ACTTGCGTCCTCATTGAAAGGTATTTAACTTTTTTTTTTTTttcttt
gi|7 : TAAAGGTCATA--T--GA--AAC-AAATCCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----AATCAA-GG-----T---TTATT-GA----ACAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT-TCTTCT-CG-CAAGACAAC-A-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--T-ACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---GAAAAAAGC-T--ATG---GG-----TTTCTAATCTCCGTA--TAAGCTAGCCGAGT---GTGTACAT----GTACATGTCT------CT-ACACTCATACTCGCGTCCTCATT-A
gi|8 : T---A--GAAT--TAA-CCTA-TATTT----CATAT-ACTCT--TAACTTTT-ATGTATG--T-CAGTCGTGT---T---TACACCA-GGGTGGGGGTTGGA------G-TAT-AAAATAATAGTCGATC--ATGACAtttt
gi|8 : cTATATAATT--A--ACGCAAATAACTTACTA------T-TAAAAAA-ACATAC----CCCCCCCCGCCCCC--------AATCAAAAC-----ACGAT---T-TGGGAACTT----CG-GACATT-------GTGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAA-CCGTGCGTCCTGTGAAATTATTCGTATCAAA-ATA-GAAA-----TA---AGATTATCATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTTTAAGTTCGCGAGTACGgcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatataattaacgcaaataacttactattaaaaaaacatacccccccccgcccccaatcaaaacacgatttgggaacttcggacattgtgggctcgaaagaaaacactgactggttatgaaaaccgtgcgtcctgtgaaattattcgtatcaaaatagaaataagattatcattacagtttttagacatattttattacgattaatcataaatagcatgccacggtcaatctatatacttttaagttcgcgagtacg
gi|9 : ctagaattaacctatatttcatatactcttaacttttatgtatgtcagtcgtgtttacaccagggtgggggttggagtataaaataatagtcgatcatgacagcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgcAAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|9 : agAGAAACCTACTA------T-TAATAA-CATATAC----CCCCCCCC-----CCCTCCCTAA-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatattaagaattgcctgttatagaaacctactattaataacatatacccccccccccctccctaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AAAATAATATTTGATCATATGGCAACTGGGTACGTAAATTTAAGGACTAGAATGAAATGCAAGGAATTTAGAAAATAACATACTATTAAAAATTAGGCAAGACCCCATTCTCCAAA
Unaligned ( gi|35 ): CTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAATCCACGAGGTCGACGATGATACGGCTTTTAATCCTTA
Unaligned ( gi|40 ): CTACGGCTCTCACCTTGCTGATGTCGTCAAAACCACCGTGATGTAAACATTTTGAAATTTAACAAAATTA
Unaligned ( gi|41 ): TGTGCATGTTTCTACACTCGTACTCGCGTTCTCATTATTTTCTTGTTAT
Unaligned ( gi|43 ): AATCCACGATATCCGACGATGATACGGCTTTTAATCCTT
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1111 11111 00000000000000000000000000000 111111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 1111111111111111111 11111111 111111 11111111 11111 11 111 1 444444444444444444444444 88888888888888888888 11111 111111 5555555555555555555 222222222 111111 11 22222222222222222222 333333 111111 1111 3333333333333333333333333333 1111111 3333333333 3333333333333 22222222222 1111
lowQualScore : 33 66 33 8888 33 444 33 0 11111 777777 22222222222222222222222222222 7777 33 77 111111111 2 4444 2 6 3 2 444 3 1 666 3 3 44 77 3 3 6 4 3 6666 2 6666 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 9999999999999999999 55555 00000000 2 5 33 444 2 2 2 33 33 2 555555 888888 1 44 4 6666 33 44444444 555 1 3 55 555 11111 33 2 22 2 0 0 333 0 9999 666666666666666666666666 00000000000000000000 0 4 6 77 999 3 22 11111 0 1 6 999999 4444444444444444444 3 333333333 66 4 4 444444 00 0 77 55555555555555555555 1 6 6 777777 8 0 99 1 1 0 444444 5 2 1 0000 5555555555555555555555555555 777 4 0 8888 4 3333333 2 4 3 55 0 7 5 5 5 0 3333333333 8888888888888 66 5 66 5 33333333333 0000 77 3 3 6 7
lowQualScore : .. .. .. .... .. ... .. . ..... ...... ............................. .... .. .. ......... . .... . . . . ... . . ... . . .. .. . . . . . .... . .... .................................................................................................................... ....... ................... ..... ........ . . .. ... . . . .. .. . ...... ...... . .. . .... .. ........ ... . . .. ... ..... .. . .. . . . ... . .... ........................ .................... . . . .. ... . .. ..... . . . ...... ................... . ......... .. . . ...... .. . .. .................... . . . ...... . . .. . . . ...... . . . .... ............................ ... . . .... . ....... . . . .. . . . . . . .......... ............. .. . .. . ........... .... .. . . . .
lowQualScore : 44 99 44 1111 44 444 44 4 66666 222222 44444444444444444444444444444 8888 44 33 555555555 9 8888 9 2 1 7 444 1 5 999 3 3 66 11 3 1 2 2 1 5555 1 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333 4444444444444444444 22222 44444444 7 3 77 777 7 7 7 77 77 7 333333 222222 0 22 6 1111 99 22222222 444 2 6 00 888 77777 44 5 22 9 9 1 999 2 4444 777777777777777777777777 77777777777777777777 1 0 6 99 666 0 99 99999 7 0 7 222222 7777777777777777777 0 888888888 99 4 4 888888 55 9 99 00000000000000000000 5 7 7 444444 0 8 22 0 4 9 444444 0 2 6 6666 0000000000000000000000000000 888 0 8 5555 0 0000000 5 0 6 00 1 6 0 0 0 5 2222222222 0000000000000 11 0 99 0 88888888888 6666 99 2 7 7 3
consensus : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTA--T--A-CTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
Reference ( family-1431 ) : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTA--T--AACTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
gi|1 : TAAAGGTCATA--T--GA--AACGC--TTCGAAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----------------------------GA----ACAAG--AA--T-----T-C-TCTGT-T------TTTTT-TTTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--GG-AT-CAA--AA-GT-GGTCGAT-CT-CGAAAATGATTTTCGA-TGATCGTGC----TTTATTTCCCTATGCTG-----T---------------------G---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATC-A-AAACAA-ATTATT--------CA-C-TGT--A---T-GGC-TTTGAAAAATGCC-AC-AATGTGC--T-ACTTT------TAA------TCGTAGTAGTAGGCCTCAGAAGGTTGTGAT--TATGTACCTCTTTCC----TCGGGA--TCAC-A-A-TTTAGAA---GAAAACAGC-T--GTG---GG-----TACCAAATCTCCGTA--TA----AGCCTAAT---GTGTA-AT----GTA------G------CT-AT------ACTCGCGTCCTCGTTGAAAAGTATGT--AACTTTTATTTTCTCGTTATCAACAATGAA--ATTC--AGCTAATC-A-A-TCAATTTTGTAATTAAACGTTTCATTCTGAGA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--GAA-CCTA-TATTT----CCTAT-ACTAT--ATACACTGAACGTACA--TGTA--CGTGTATACATGTACACCA--GGTGGGGGTG----T---TGTTATGAAAATAATATTTGATCAAATAACACAAATAACCTACTA------T-TAAAAAACATAGAC----CCCTCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAAC-T----AA-GATACT-------GAAGGCTCGAGAGAACACACCAACTGA-TTATGAAGAACCGTGCGTC-TGTAG--TTATTCG---------------------------------TATTACCG-TTTTAGACATA-------------TTTGATTTCGATTAATGAT--AAATGACATGCCACGGT-A--AATC---T-----------ATAC----TTATAAGTTCGTGAATATGCCTA--ATACGGC--------CGGCAATTCACGGGTTTT
gi|10 : AAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|10 : agAGAAACCTACTA------T-TAAATAACATATAC----CCCCCCCT-----CCCTAA---A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatataagaattgcctgttatagaaacctactattaaataacatatacccccccctccctaaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
gi|11 : agaattaacctatatattccataaacgctgaacgtacataagtttttaaaccaggatgggggtagggatacatgtatgaaaataatatttgatcatgacagcgtgaacgttatttaaagaactctcaatataagaattgcctgttatAAAGGTCATA--T--GA--AACCAA--CCCGAAGAAATTGAG--T---TCC-CA--TGCGAATTC-----A------TT-----AATCAA-GG-----T---TTAATTGA----ACAAA--AT--T-----C-C-TTTGT-TA-A--TTCTTT-TCTCAA-TG-CAAGATAACTG-TCAA-TACAGC--TGAAT-CAA--AA--T-GCT-GAT-CT-CGAAAATGA-TTTCGATTGAT-GCGG----CTGATCTACCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------TC--AAAACGACCCACAGTGATGTAAACCAAAA-------CAGT---T---TGT-A-T-T-AAACAA-ATTATT--------CAGC-TGC--A---TAAGCTTTTGAAAAATGCCAACAAATGTGC--T-ACATT------TAATCGTATTCGTAGTAGTAGGCCGCAGAAGTTTTGGGC--GA-GTACCT-TGTCC----TGGG----TTCC-A-A-ATTTGAA---GGAAAATGC-T--ATGCATGGT----TTCCAAATCTCCGT
gi|12 : aGTCACA--T--GA--AAC-AAATCCCGAAGAAATTTAG--T---TCTGCA--TGCAAATTT-----A------TTAATCAA------GGTTTA-T---T-----GG----ACAAG--AA--T-----TCC-TTTGT-TA-C--TTTTTT-TCTCA
gi|12 : at-ATTATT--------CA-C-TGT--A---T-AGC-TTTGAAAAATGCC-AT-AGTGCGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGTACCTTTTTCCTGCATGGGGA--TCCCAA-A-TTCAGAA---GAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattcactgtatagctttgaaaaatgccatagtgcgctacatttaatcgtagtagtaggccgcagaaggttttgactatgtacctttttcctgcatggggatcccaaattcagaagaaac
gi|13 : atgtcacatgaaacaaatcccgaagaaatttagttctgcatgcaaatttattaatcaaggtttattggacaagaattcctttgttactttttttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGTCACA--TTTGATAAAAGACATTTTGAG--AATTGAG--T---TATTCA--TAGGAATTC-----ATTTATTTT-----A------AG-----T---TATC--AA----ACAAAGCAA--T-----T-C-ATTGT-T-----TTATTT-TTTCAA----AAATATAAC---TCAATTACCAC---G-AT-CCA--AATGT-ATGGGAT-CTATGAAAATGA--TTCGG-TCGTCGCAGATATATAATCT---TTTGCTGG----T---------------------G---------------------CC---------------------G---------------------T----TT---------------------CAAAA--------AG------------ATT-TCCAACAGTCTTGTT-------------TGC--A---T-AGC-TTTGGAAAATGAG-AC-CTTGTG----------------TGA------TT------GTAGATCGC--------CAGAC--CATGTGATATTTCCC----AAGGGATTTTCC-A-A-TCTAGAA---GGAAAA--CAT--ACG---GG-----TA-CAAATCc
gi|14 : tgGGTCGTAGAGGGTTGCGAC--CATGTACCTGGTTCC----TAGGGA--TCCC-A-AATTCAGAAAAAGAAAAAAAA-T--ACG---G------TAC-AAATTTA-GTA--CAGGCCGTTCTAGTTTCATATCTATTAAAGTA------ATACGAGCA-AC------ACTCACGTCCTCA----AAAG--------------GTTTTCTTGTCATCAATAATAAA--ATCT--AGATA--T-A---TTAATATTGCAAACAAACCTTTCATTCTGGAA-TA------AAAAA----------A--A---AAGAAGTATCATTCAG-AATA-AT--------------A-CCTA-TATTC----CACAT-GCT
gi|15 : AAAGTCATA--T--GA--AACGATATTTTGGAGAAATTTTG--T---TTTGCA--TCGGAATTC-----A------TT-----A------------------------A----ATAAG--AA--TCATTGT-T-TTTAT-CATA--TTTTAT-TC-AAA-TG-CAAGATAAC-G-TGAA-T-------CG-TT-CAA--AT-GT-ACCCGGT-CA-CGAAAATGATCTTCGA-TGATCgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgac
gi|15 : -C-TGC--T---T-AGC-TTCGGTAAATTAC-AC-ATTTTCC--T-ACAAC------TAA------TTGTTATTATAGGTCGCAGAAGGTTGCGAC--CATGTGCGTATTTCC----TAGGGA--TTCCGA-A-TTTAAAA---AGAAACA---T--ACG---GG-----TACccagattacccaactgtttgactctgcttagcttcggtaaattacacattttcctacaactaattgttattataggtcgcagaaggttgcgaccatgtgcgtatttcctagggattccgaatttaaaaagaaacatacgggtaca
gi|16 : aaagtcatatgaaacgatattttggagaaattttgttttgcatcggaattcattaaataagaatcattgtttttatcatattttattcaaatgcaagataacgtgaatcgttcaaatgtacccggtcacgaaaatgatcttcgatgatcccagattacccaactgtttgactCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTG-TGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--TAACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---G-AAAAAGC-T--ATG---GG-----TTTCTAATCT-CGTA---AAGCTAGCCGAGT---GTGTACAT----GTC------T------CT-ACACTCATACTCGCG-CCTCATT-Aa
gi|17 : A---------------------CAAAA-------CACT---T---CGT-ATT----AACAA-ATTATT--------CA-C-TGC--A---T-TGC-TTTGGAAAATGCC-AC-AATGTGT--A-ACATT------Tttttctttttattct
gi|18 : tatgaaacgatttccgaaaaaaaaaaaaagaattatgcatggaaattttatttatcaagatttattcaagaagaatttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTG---GG-----TACCAAATATCAGTA--TGA---AACCTAAT---ATGTA-AT----GTA------G------AT-AC------ACTCATGTCCTCACTGAAAAGTA--TGGAACTTTTATTTTCTTATTATC-ACTGTTCGTTATCTTTGTCT--TT-A-AATCAATATTCTAAATAAACCTTTCATTCTGACATTT------AAAAAATCTAGAAGTATCATTTAGAAATTATCATTCAGAAATA------A--TAAT--TCA-CATA-TAGTC----CATAT-ACTATAAAAACACTGAACGT--------A--CGAGT-TATC--TAGA--GGGGGTGGGGGTG
gi|19 : C-----C--------A-CCAAATC-----ATGATAAATATGTAAAC------CAAGACATTAATTGAGGAGGGCTCAAGAAAAAACA--GACTGA-TTATGAAGAACCGTGCTTC-TGTAA--CTATTCGT-TTAAATA-A-GAAAATACTTA-TAGGATTACCATTACAGTTTTAAGACATA-------------TTTTATTATGATTAATCATTAAAATGATATGCTACGGTACCAAATCTAGTAGATTTGGGCAATACGTGTTTGTAAGTTCGTGAATATGCCTA--ATACGTCTTCATCATTGGGAA-TCACGGGTTTTcgttgtaa
gi|2 : AAAGGTCATA--TAAGA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGAAATTGCAAATTC-----A------TT-----AAATCAAGG-----T---TTATT-GA----ACAAG--AAATT-----C-C-TTTGTCTA-A--TTTTTT-TCTCAAATG-CAAGATACC-GGTCAA-TGCAGC--TA-AT-CAAGAAA-GT-GCTCGAT-TT-CGAAAATGATTTTCGA-TGATCGCGG----CGAATCTCT-TTTGCTGACAAAT---------------------G---------------------ACGTCCAAAAGACCCACAGTAATG---------------------T---AAA---------------------AAAAAAAAAAACCAGT---AAGAGGT-ATT-T-AA-CAA-ATTATTTCATTATTCA-C-TGC--A---T-AGC-TTTGAAAAATGCC-A---GTTTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGAAGAAGGTTTTGAC--TAAGTACCTGTTTCC----TGGGGA--TCCC--------AGAA---GAAAAAGGC-T--AT-----A-----TAGTAGAGGTC--TA--TAAGCTAGCCTAAC---ATGTCTCT----GTAC-----A------CTCGT------GCTCGCGTCCTCA--------------------TTATGTTCTTGTTATCGACAATCAG--ATCC--AGCTAATTAA-A-TTAATATTGTAAATAAACCTTTCAATCCGACA-TT------AAAAA----------A--ATTTGTGAAGTATCATTTAGAAAT
gi|20 : CACAAAAAACATGTAA------T---AAAAATATAGAA----GACCCCAC-----C-----------CAAA------------------------TT----TA-GACATT-------TCGGGCGTGCGAAGAAGCAATAAATGGATTATGAAGAACCGTGAGTT-TGTGG--Tt
gi|21 : attcagaataatacctatattccacatgctgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgacagcgggtacgtaaaataaagacctaagtaaatgcattacctgctgaagaattaacGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTGAG--T---TATGCA--TGGAATTTC-----A------TTTATAAA------GA-----TTTAT-----GAT---ACAAG--AA--T-----T-CATTTG---A-A--TTTTTT---TTAA-TG-CGAGA-AAC-G-TCGG----------------AA--A--------TGAT-CT-------------TCGG-TGATCGCGT----CTTATCTCCCATTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAA---------------------AAAGA-------C
gi|21 : --------CA-T-TGCTGA---T-GAC-GTCAAAAAGACCC-AC-A-TGTGC--T-GCATT-------AA------TCGTAGTAGTAGGccacatgtgctgcattaatcgtagtagtagg
gi|22 : ggtcatatgaaacgatttccgaagaaattgagttatgcatggaatttcatttataaagatttatgatacaagaattcatttgaattttttttaatgcgagaaacgtcggaaatgatcttcggtgatcgcgtcttatctccACACAAAAAACATGTAA------T-TAAAATATAGAAGG----CACCCCAC-----C--------A--------------CAAT---T----AAACTT----TA-GACATC-------TCGGGCGTGCGAAGAAGCAATAAATGG-TTATGAAGAACCGTGAGTT-TGTGG--T
gi|23 : aaacaatatttgatcttatgacagcgggtacgtaaaataaacaactataaagtaaatgcattacctgctgaagaattaaATCGCGG----CTTATTTCCGTTTGATAA----A---------------------G---------------------AC---------------------GTCAAAAATACCCATTGTGATAT---AAA---------------------CAAAAA------CAGT---T---TGT-ATT----AACAA-AGTATT--------TA-C-TGC--A---T-ATC-TTTGAAAAATGCC-AC-AGTGAGC--T-ACAGG------TAA------TCGTAGTAGTAGGTCGCAGAAGTTTGTGAC--CATGTACATCTTCTC----AAGGGA--TC
gi|24 : A--T--ATCTTTTATCTTCTCAT-ATCAATAAT-AA--ATCC--AG---ATC-A-A-TTCATATTGTAAAAAATCCTTTCATTCTGAAA-TTCATAGAAGAAA----------ATTAATT--AAAT--TCAT---GAAATGCATTGAA--TAATAATGA-CCTATTATTC----CATATCACTAT--
gi|25 : agagcag-----T---T-----AA----ACAAG--AA--T-----T-T-AATTT-TA-AAATATTTT-TTTAAAATG-CAAGA---------AA-T--------G-AT-GAA--GATGTTACTCGATGCA-C-ACAATGG-----GG-T--TCGTAA----CTTATCTCCC-TTGCTGA----T---------------------G----------------------C---------------------G---------------------TCCAAAA---------------------CGAAC-------CA-----C---TGT-GCTGT-AAACAA-catacttaact
gi|26 : gaattgcaataattaagctgtaAAGGTGATA--T--GA--AACGAT-TTCCGAAAAAAAAAAGAAT---TATGCA--TGGGAATTTTATTTA------TC-----A------AGATTTAT---T-----CA----AGAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT----CAA-TG-CAAGATAAC-G-TCAG-TACAGCNTTG-ATATGA--AA-------CGAT-TTCCGAAAcaaa
gi|27 : TACAGTTTTTAGACATA-------------TTTTATTACGATTTATCAT--ACGTAGCATGTCACGGT-C--AATCTA-T-----------AAAC----TTGTAAGTTCGTGGGTACGCCTG--ATAAGGCTTCATCGTC-GGAATTCACGGGTTTT
gi|28 : GGTCATA--T--GA--AAC-AAATCCCAAAGAAATTTAG--T---TCTGCA--TGCCAATTC-----A------TTAATCAA------GGTTTA-T---T-----GA----ACAAG--AAATT-----C-C-TTCGT-TA-A---TTTTT-TCTCCA-TGCCAAGATAAC-G-TCAA-TAC
gi|3 : AA-CCTA-TATTTTCGTCATTT--C--------CGCTGAACGTACATTT-TA--CGTGT-TAT-----AACCAGGGGTGGAGGTGGTG------G-TATG------ATATTTGATC--ATGACAGCGGGAACGT--TA------TCTAAAGAAC
gi|3 : ACGCAAATACCCTACTAGTACTAT-TACAAAATATATACACCCCCCCTCCC-----C--------AATCAAACACTTGAACGAT---T-TGTGAACTT----CA-GACATT-------GCGCGCTCGAAAGAAAACACTGACTGG-TTATGAAATACCGTACGTC-TGTGA--TTACTCATATCAAA-A-A-GAAA-----TA---GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTATGATTAATCAG--AAATAGCATGCCAAGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCATGAGTACGCCTAATATACGGCTTCtaatgtaaagaattacctgcgatagaattaaacgcaaataccctactagtactattacaaaatatatacaccccccctccccaatcaaacacttgaacgatttgtgaacttcagacattgcgcgctcgaaagaaaacactgactggttatgaaataccgtacgtctgtgattactcatatcaaaaagaaataggattattattacagtttttagacatattttattatgattaatcagaaatagcatgccaaggtcaatctatatacttgtaagttcatgagtacgcctaatatacggcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|30 : aacctatattttcgtcatttccgctgaacgtacattttacgtgttataaccaggggtggaggtggtggtatgatatttgatcatgacagcgggaacgttatctaaagaactaatgtaaagaattacctgcgatagaattaaC----CCCCCCCC-----C--------A-TCAAACACTTGAACGAT---T-TATGAACTTAATTCA-GACATT-------TTGCGCTTGAGTGAAAACGCTTACTGG-TTATGAAATACCGTACGTC-TGTGA--Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|31 : caccc-TGTGAACTT----CA-GACATT-------GCGCGCTCGAA--------------GG-TTATGAAATACCGTCCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-TAGGATTATTATTACAGTTTTTAGACATA-------------
gi|32 : ----T---------------------G---------------------AT---------------------T---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ACC-T-AAGCA------TT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-A---GTGTGC--T-GCATT------TCA------TTGTAATAGTAATTCGCAGAAGGTTGTG
gi|33 : cgGTC-TGTGA--TTATTCGTATCAAA-A-AAGAAA-----AA-A-GGATAATTATTA--GTTTTTAGACATACATGTACAATGCATTTTATTACGATTAATCAG--AAATAGCATG
gi|34 : CAGTTTTTAGACATACATTTTGTA----TTTTAGTACGATTAATCAT--AAATAGCATGTCACGGT-C--AATCTA-T-----------TTAC----TTGTAAGTTCGTGAGTACGCCTA--ATA
gi|36 : AAGGTAATA--T--GA--AACGATATTCTGAAGAAGCCGAG--TTAATTTG-----GGGAATTC-----A------TT-----A------
gi|37 : ttAAGGTCATAAAT--GA--AACGAT-TTCCGAAGAAATTGAG--T---TACGCA--TGGGAATTA-----A------TTTATC-A------CA-----T---T-----TACTACACAAG--AA--T-----T-C-atcaagttgtgctacacaaaagttcatt
gi|38 : AAGGTCATA--T--GA--AACGAT-TTCCAAAGAAATTGAG--T---TCTGCA--TGGGAATTCTTTT-A------TC-----A------AGATTTAT---T-----GA----ACAAA--Aca
gi|39 : AGAATGATCTTCGA-TGATCACGG----TTTATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAG---------------------AAAGA-------C
gi|4 : atcTAAAGGTCTAA--T--GA--AACAAA--TCC------------------TTTGC------GAATTC-----A------CT-----AATCAA-GG-----T---TTATT-GA----ACAAG--GA--T-----T-CCTTTGT-TA-T--TTTTTTCTCTCAA-TG-CAAGACAAC-G-TCAA-CATAGC--TG-CT-CAA--AA-GT-GTTCGAT-CT-CAAAAATGATTTTCGA-TGGTCGCGG----CTGATCTCTCTTTGCTGA----TGACGTCAAAACGACCCACAATG---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT----AATAA-ATTATT--------CA-C-TGC--A---T-AAC-TTTGAAAAATACC-AC-AGTGTTCTAT-ACATT------TAA------TCGTAAGAGTAGGCCACAAAAAGTTTTGTC--TATGTACCTTTTTCG----TGGGGA--TCCC-ACA-TTTAGAA---CAAACAAGC-T--ATG---CG-----TTTAAAATCTCCGTA--TAAGCTAGCCTAGTAG-GCCTACAT----GTT------C------CT-ACACTCGTACTCGCGTCCTCA--------------------TTATTTTCTTGTTATCGACAATAAA--ATTA--ATTTAATT-AGA-TTAATATTGTAAATAAACATTTCATTCtcaccgtgatg
gi|42 : tGTATCTCTTTCC----TAGGGA--TCCCAA-A-TTTAAAA---GAAAAA
gi|5 : GTCATA--T--GA--AAC-AAATTCCGAAGAAATTGAG--T---CCTGCA--TGCCAGTTC-----A------TT-----AATCAA-GGCTTA-T---T-----GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TCTCAA-TG-C---------G-TCAA-TACAAC--TG-AT-GAA--AA-GT-GCTCGAT-TT-CCAAAATGATTTTCGA-GGGTCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CG-----------------------------ACC--------CA-C-TAC--AATTT-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TTGTAGTAGTAGGTCGCAGAAGGTTTTGACTATATGTACCTCTTTCC----TGGGGA--TCC-------------------AAAAGC-TACATG---GG-----TTTCAAATATCCGTATTTAAACTAA-----------GTACAT----GTC------T------CT-AC------ACTC------------------A--T--A---CTCATTTTCTTGCTATTGACAATCAA--ATCA--AGCTAATTAA-A-TCAATATTGTAAAT---------ATTGT-ATA-TT------AAAAA----------G------------TATCATTCAGAAATA-AT---AATTAAT--CAGTCTTA-TATTg
gi|6 : AAGGTCATA--T--GA--AACGAT-TTCCGAAGAAATTAAG--T---TCTGCA--TCAAGGTTT-----A------TT-----------------------------GA----ACAAG--AA--T-----T-CCTTTGT-TA-A--TTTTTT-TTTCAA-TG-CAAGATAAT-A-TCAG-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTACAA-TGATTGCGG----CTGATCTCCCTTTGCTGA----T---------------------GACATCAAAACGGCCCACTGTGAT---------------------G---------------------T---AAA---------------------CAA---------CAGT---T---TGT-ATT----GACAA-ATTATT--------CA-C-TGC--A---T-ATC-TTTGAAAAATGC--A--AGTGTGC--T-ACATT------TAA------TCACAGTAGTAGGCCGCAGATGGTTGTGAG--TTTGTACCTCTTT-C----TGGGGA--TCCCAA-A-TTTAGAA---GGAAAAAGC-T--ATG---GGTAGCCTACCAAATCTCCCTATTTTATTAAGGCTAGT---GTGTA-AT----ATA------G------CT-AC------ACTTGCGTCCTCATTGAAAGGTATTT--AACTTTTTTTTTTTTttcttt
gi|7 : TAAAGGTCATA--T--GA--AAC-AAATCCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----AATCAA-GG-----T---TTATT-GA----ACAAG--AA--T-----TTC-TTTGT-TA-A--TTTTTT-TCTTCT-CG-CAAGACAAC-A-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATG-T-AAAC-------TG--------CA-TGGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGC--T-ACATTTACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCC-A-A------AA---GAAAAAAGC-T--ATG---GG-----TTTCTAATCTCCGTA--TAAGCTAGCCGAGT---GTGTACAT----GTACATGTCT------CT-ACACTCATACTCGCGTCCTCATT-A
gi|8 : T---A--GAAT--TAA-CCTA-TATTT----CATAT-ACTCT--TAACTTTT-ATGTATG--T-CAGTCGTGT---T---TACACCA-GGGTGGGGGTTGGA------G-TAT-AAAATAATAGTCGATC--ATGACAtttt
gi|8 : cTATATAATT--A--ACGCAAATAACTTACTA------T-TAAAAAA-ACATAC----CCCCCCCCGCCCCC--------AATCAAAAC-----ACGAT---T-TGGGAACTT----CG-GACATT-------GTGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAA-CCGTGCGTCCTGTGAAATTATTCGTATCAAA-ATA-GAAA-----TA---AGATTATCATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTTTAAGTTCGCGAGTACGgcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatataattaacgcaaataacttactattaaaaaaacatacccccccccgcccccaatcaaaacacgatttgggaacttcggacattgtgggctcgaaagaaaacactgactggttatgaaaaccgtgcgtcctgtgaaattattcgtatcaaaatagaaataagattatcattacagtttttagacatattttattacgattaatcataaatagcatgccacggtcaatctatatacttttaagttcgcgagtacg
gi|9 : ctagaattaacctatatttcatatactcttaacttttatgtatgtcagtcgtgtttacaccagggtgggggttggagtataaaataatagtcgatcatgacagcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgcAAT--TAA-CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACA--T-AA-----GT-TTT---TAAACCAGGA-TGGGGGTAGGGATACATG-TATGAAAATAATATTTGATC--ATGACA
gi|9 : agAGAAACCTACTA------T-TAATAA-CATATAC----CCCCCCCC-----CCCTCCCTAA-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-A-AATA-----TATT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatattaagaattgcctgttatagaaacctactattaataacatatacccccccccccctccctaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
blockSeqs : AA TT TA GACA AA TAA AT TATTT TTTATT AATCAAGGTTTAATT CTAC GC AT CATTGTT C AAA C A C T TG T A NTT A A GA TG T G A T T ATAT G CAAA GACGTCAAAACGACCCACAGTGATGTAAAC AAAAAAC CCCACTGTGATGTA AGTCT TCATTATT G G TG ATT A T A CA TA A TACATG TCGTAT T TA T TGCA TT AAATTC AAA G A AC CAT TAGCC TC C TT G TTC T TAAA CATGTCTCTACACTCAT CTGAAAAGTATGGAACTT A A TT TTT A AA AAA A T CATAGA ATCTAGAAGTATCATTTAG G CATTGAA AA T T TTTCGT CA AA TTTTACGTGTTAT A G G ATACAT . . A C GTACTA C C T ACCC CCCTCCCTAATCAAACA AAA A AATT A AATTGAG C A C AA T T T A ATACTTATA CATGTACAATGCA TA A CA G AGATTTGGGCA GTGT AT T A G T
blockSeqs : . AA . GATA . . . TTTT . AAATCAAGGTTTATT T . AT TCC . TA . A . T GG . A T . . . TG . . C T . . A . GACGTCCAAAAGACCCACAGTAATGTAAA A CCCACTGTGATGTA AAAT . . G . . . . . T . . TACATG . T . T . . AAATTC . A . . . T AC C TT G AG C . ATACGAGCAAC TTGAAAGGTATTTAACTT G T . T C AA AAA C . . AATTTGT T ATAAT . . . TC T . TCAGTCGTGTT G G G ATACAT . . A A . . T G . CAATCAAACACTTGA . . . . . A . . . C . . . TATT CATTTTGTA . . . . . . . T G . .
blockSeqs : . . . GATA . . . . . AATCAAGGTTTATT . . . TCA . A . . . T G . G C . . . G . . . T . . G . GACGTCAAAAATACCCATTGTGATATAAA . TAAGAGGTATTTA AAAT . . . . . . . . C . . . . C . G . . GAATTT . G . . . . AC A . G . T . TCTACACTCAT AAAG A C . C C AA AGA C . . ATTAATT G AT . . . TC G . ACGAGTTATC A G G . . . A A . . T A . GCCCCCAATCAAAAC . . . . . A . . . C . . . TATA . . . . . . . . T
blockSeqs : . . . CAA . . . . . AATCAAGGTTTATT . . . TTC . C . . . T G . A T . . . G . . . T . . A . GACGTCAAAACGACCCACAATGATGTAAA . CTGTGCTGTA AAAT . . . . . . . . C . . . . G . A . . ACATTT . A . . . . TT C . G . C . CCTACACTCGT ATAC G A . C T A AAA A . . AAAA T A . . . TC A . TAAGTTTT C G . . . . G G . . C T . CCCTAAATCAAACA . . . . . C . . . C . . . TATT . . . . . . . .
blockSeqs : . . . AAA . . . . . AATCAAGGTTTATT . . . TCC . A . . . T G . A T . . . G . . . T . . T . GACATCAAAACGGCCCACTGTGATGTAAA . TTTGTACCTA AAAG . . . . . . . . C . . . . G . T . . AAATTT . G . . . . AC C . A . C . CACTCGT . G C . A C A AA T . . G . . . . TT A . TAAGTTTT A . . . T C . . T T . CATCAAACACTTGA . . . . . C . . . C . . . AAA . . . . . . . .
blockSeqs : . . . AAA . . . . . AATCAAGGCTTATT . . . TCC . A . . . T G . A T . . . G . . . T . . T . GCGTCCAAAA . TTTGTATTA AAAT . . . . . . . . C . . . . T . G . . AAATTT . A . . . . AG C . T . C . GATAC . . . . A . . A . . . . T . T T . . C T . CACCAAATC . . . . . C . . . . . . . TA . . . . . . . .
blockSeqs : . . . GAT . . . . . AATCAAGGTTTATT . . . TCC . A . . . C G . A T . . . G . . . T . . T . GACGTCAA . TTCGTATT AAAT . . . . . . . . C . . . . T . C . . AAATT . A . . . . TT C . G . . . TCTAC . . . . . A C . . . . CCAAA . . . . . C . . . . . . . TA . . . . . . .
blockSeqs : . . . GAT . . . . . TATAAAGATTTAT . . . TTC . A . . . T G . A T . . . G . . . T . . T . GATTTAAA . TTTGTATT A . . . . . . . . C . . . . G . T . . AATCT . A . . . . TT . . . . . . GCTAC . . CA . . . . . . . . . . .
blockSeqs : . . . AAA . . . . . AAGATTTATT . . . CC . T . . . C A . A . . . . . . . . . . . G . GACGTCAG . TTTGTATT . . . . . . . . . C . . . . G . C . . AA . G . . . . AC . . . . . . . . . .
blockSeqs : . . . GAT . . . . . AAGATTTATT . . . TC . A . . . . A . . . . . . . . . . . . . G . GCCGTTT . TTTGTATT . . . . . . . . . C . . . . T . C . . AA . A . . . . TT . .
blockSeqs : . . . GAT . . . . . TATCACATT . . . CC . A . . . . . . . . . . . . . . . . . . G . GACGT . ATTTCC . . . . . . . . . C . . . . T . C . . . . . . . A
blockSeqs : . . . AAA . . . . . AAGTTATC . . . TT . A . . . . . . . . . . . . G . GACGT . . . . . . . . . . . . . . . G . T . . . . .
blockSeqs : . . . AAA . . . . . A . . . CC . . . . GACGT . . . . . . . . . . . . . . T . . .
blockSeqs : . . . GAT . . . . . . . . . TC . . . . . . . . . . . .
blockSeqs : . . . AAA . . . . . . .
blockSeqCons : GAA* AATCAAGGTTTATT*************** TCC****** A*** TTTGTATTA********** AAATTT** TGAAAGAT************ AAA** ATTAAT************* AT******* TAAGTTGTT*********** ****** ** CCCAATCAAACA**************** TATA******
originalCons : TAAAGGTCATA--T--GA--AACGANATTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TT-----A------GG-----T---T-----GA----ACAAG--AA--T-----T-C-TTTGT-TA-A--TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ATT-T-AAACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCC-A-A-TTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATT-AAAAGTA--T--A-CTTTTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATT-A-A-TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAA----------ATCATTTAGAAATTATCATTCAGAAATA-AT---A--TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACA--T-NA--CGTGT-TAT---TAAACCAGGGGTGGGGGTGGGGATACATG-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCC-----C--------A-TCAAACA-----ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAA-----TA-T-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
finalCons : TAAAGGTCATA--T--GA--AACGAA-TTCCGAAGAAATTGAG--T---TCTGCA--TGGGAATTC-----A------TTAATCAAGGTTTATT---------------GA----ACAAG--AA--TTCC------TTTGT-TAA---TTTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-GT-GCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGTTTGTATTA----------AACAA-ATTATT--------CA-C-TGC--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGC--T-ACATT------TAA------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCCAAATTT--AGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCGCGTCCTCATGAAAGAT------------TTATTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATTAAA--TCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAAATTAAT-------------AAATTATCATTCAGAAATAAT-------TAAT--TAA-CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACATAAGTTGTT-----------TAAACCAGGGGTGGGGGTGGGG------G-TATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC----CCCCCCCCCCCAATCAAACA----------------ACGAT---T-TGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-A-GAAATATA------GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AAAATAATATTTGATCATATGGCAACTGGGTACGTAAATTTAAGGACTAGAATGAAATGCAAGGAATTTAGAAAATAACATACTATTAAAAATTAGGCAAGACCCCATTCTCCAAA
Unaligned ( gi|35 ): CTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAATCCACGAGGTCGACGATGATACGGCTTTTAATCCTTA
Unaligned ( gi|40 ): CTACGGCTCTCACCTTGCTGATGTCGTCAAAACCACCGTGATGTAAACATTTTGAAATTTAACAAAATTA
Unaligned ( gi|41 ): TGTGCATGTTTCTACACTCGTACTCGCGTTCTCATTATTTTCTTGTTAT
Unaligned ( gi|43 ): AATCCACGATATCCGACGATGATACGGCTTTTAATCCTT
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 11 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 1111111 11111111 11111 11 111 3333333333333333333333333 111111 00000000000000000000000000 222222 7777777777777777777 222222 1111111111111 111111 11 11111 444444444444444444444444444444444 44444444 11 111111 11111 222222 1111111 111111111 3333333333333 22222222222 1111
lowQualScore : 33 66 33 00 55555 33 4444 33 0 2 4 3 55 2 2 2 55 2 0 2 4444 2 2 3 3 2 444 3 444 3 3 44 000 3 6 4 3 6666 2 6666 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 5555555 6 9 3 9 55555 00000000 2 2 2 33 444 2 2 2 33 66 777777 888888 888888 1 44 4 6666 33 1 0 11 555 3 55 555 11111 33 2 22 2 0 0 333 8 8888 9999999999999999999999999 111111 00000000000000000000000000 55 4 6 77 999 3 22 0 0 1 6 555555 2222222222222222222 3 333333 3333333333333 4 111111 00 00000 3 2 555555555555555555555555555555555 1 00000000 33 1 0 666666 5 1 77 888 99999 5 555555 0 8888 4 3333333 2 4 3 55 0 7 5 5 0 999999999 8888888888888 66 5 66 5 33333333333 0000 77 3 3 6 7
lowQualScore : .. .. .. .. ..... .. .... .. . . . . .. . . . .. . . . .... . . . . . ... . ... . . .. ... . . . . .... . .... .................................................................................................................... ....... ....... . . . . ..... ........ . . . .. ... . . . .. .. ...... ...... ...... . .. . .... .. . . .. ... . .. ... ..... .. . .. . . . ... . .... ......................... ...... .......................... .. . . .. ... . .. . . . . ...... ................... . ...... ............. . ...... .. ..... . . ................................. . ........ .. . . ...... . . .. ... ..... . ...... . .... . ....... . . . .. . . . . . ......... ............. .. . .. . ........... .... .. . . . .
lowQualScore : 22 55 22 11 99999 22 3333 22 3 2 4 7 33 3 2 2 33 4 3 9 8888 9 9 1 1 7 444 1 999 3 3 66 444 1 2 2 1 5555 1 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333 2222222 2 2 1 1 22222 44444444 7 7 7 77 777 7 7 7 77 33 777777 222222 222222 0 22 6 1111 99 5 3 00 444 6 00 888 77777 44 5 22 9 9 1 999 2 5555 3333333333333333333333333 555555 44444444444444444444444444 55 0 6 99 666 0 99 1 7 0 7 888888 3333333333333333333 0 333333 6666666666666 0 111111 00 66666 4 5 111111111111111111111111111111111 1 11111111 88 0 1 444444 7 7 99 888 44444 0 111111 8 5555 0 0000000 5 0 6 00 1 6 0 0 5 888888888 0000000000000 11 0 99 0 88888888888 6666 99 2 7 7 3
consensus : TAAAGGTCATA--T--GA--AACGA-ATTCCGAAGAAATT-----GAG--TT---CTGCA--TGGGAATT-C-ATTAA--TCAAGGTTT-ATTGA-ACAAG--AA-TTCCTTTGT-T--A-AT-TTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-G-TGCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-AT-T-AAACAA-ATTATT--------CA-C-TG-C--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGCTA--CATT------TA------A------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCCAAATTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCG------CGTCCTCA-T-AAA------G--A---------TTTA--TTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATTAAATCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAAAT-TA-----A-T-------AAATTATCATTCAGAAATA-AT-T-AAT-----TAA-----CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACAT---AAGT---TGT-T-----TAAACCAGGGGTGGGGGTGGGG------GTATGAAAATAATATTTGATC--ATGACACAAGNAACCTACTA------T-TAAAAAACATATAC--CCCCCCCC---CCC-----AATCA-AACA-----ACGATTTGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-AGAAA-----TAT-GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
Reference ( family-1431 ) : TAAAGGTCATA--T--GA--AACGA-ATTCCGAAGAAATT-----GAG--TT---CTGCA--TGGGAATT-C-ATTAA--TCAAGGTTT-ATTGA-ACAAG--AA-TTCCTTTGT-T--A-AT-TTTTT-TCTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--TG-AT-CAA--AA-G-TGCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-AT-T-AAACAA-ATTATT--------CA-C-TG-C--A---T-AGC-TTTGAAAAATGCC-AC-AGTGTGCTA--CATT------TA------A------TCGTAGTAGTAGGCCGCAGAAGGTTNTGAC--TATGTACCTCTTTCC----TGGGGA--TCCCAAATTTAGAA---GAAAAAAGC-T--ATG---GG-----TACCAAATCTCCGTA--TAAGCTAGCCTAGT---GTGTACAT----GTA------N------CT-AC------ACTCG------CGTCCTCA-TGAAA------G--A---------TTTA--TTTTCTTGTTATCGACAATNAA--ATCC--AGCTAATTAAATCAATATTGTAAATAAACCTTTCATTCTGANA-TT------AAAAAAT-TA-----A-T-------AAATTATCATTCAGAAATA-AT-T-AAT-----TAA-----CCTA-TATTC----CATAT-ACTAT--AAACGCTGAACGTACAT---AAGT---TGT-T-----TAAACCAGGGGTGGGGGTGGGG------GTATGAAAATAATATTTGATC--ATGACACAAANAACCTACTA------T-TAAAAAACATATAC--CCCCCCCC---CCC-----AATCA-AACA-----ACGATTTGTGAACTT----CA-GACATT-------GCGGGCTCGAGAGAAAACACTGACTGG-TTATGAAAAACCGTGCGTC-TGTGA--TTATTCGTATCAAA-A-AGAAA-----TATAGGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCGTGAGTACGCCTA--ATACGGCTTCATCGTCGGGAATTCACGGGTTTT
gi|1 : TAAAGGTCATA--T--GA--AACGC--TTCGAAAGAAATT-----GAG--TT---CTGCA--TGGGAATT-C-ATT-----------------GA-ACAAG--AA-TTC-TCTGT-T-------TTTTT-TTTCAA-TG-CAAGATAAC-G-TCAA-TACAGC--GG-AT-CAA--AA-G-TGGTCGAT-CT-CGAAAATGATTTTCGA-TGATCGTGC----TTTATTTCCCTATGCTG-----T---------------------G---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-AT-CAAAACAA-ATTATT--------CA-C-TG-T--A---T-GGC-TTTGAAAAATGCC-AC-AATGTGCTA--CTTT------TA------A------TCGTAGTAGTAGGCCTCAGAAGGTTGTGAT--TATGTACCTCTTTCC----TCGGGA--TCAC-AATTTAGAA---GAAAACAGC-T--GTG---GG-----TACCAAATCTCCGTA--TA----AGCCTAAT---GTGTA-AT----GTA------G------CT-AT------ACTCG------CGTCCTCGTTGAAA------A--GTATGTAACTTTTA--TTTTCTCGTTATCAACAATGAA--ATTC--AGCTAATC-AATCAATTTTGTAATTAAACGTTTCATTCTGAGA-TT------AAAAAAT-CATTT--A-G-------AAATTATCATTCAGAAATA-ATAT-AAT-----GAA-----CCTA-TATTT----CCTAT-ACTAT--ATACACTGAACGTACAT-----GTACGTGTATACATGTACACCA--GGTGGGGGTGTTG------TTATGAAAATAATATTTGATCAAATAACACAAATAACCTACTA------T-TAAAAAACATAGAC--CCCTCCCC---C--------ATCA-AACA-----ACGATTTGTGAAC-T----AA-GATACT-------GAAGGCTCGAGAGAACACACCAACTGA-TTATGAAGAACCGTGCGTC-TGTAG--TTATTCG-------------------------------TATTACCG-TTTTAGACATA-------------TTTGATTTCGATTAATGAT--AAATGACATGCCACGGT-A--AATC---T-----------ATAC----TTATAAGTTCGTGAATATGCCTA--ATACGGC--------CGGCAATTCACGGGTTTT
gi|10 : -AAT-----TAA-----CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACAT---AAGT---T-T-T-----TAAACCAGGA-TGGGGGTAGGGATACATGTATGAAAATAATATTTGATC--ATGACA
gi|10 : agAGAAACCTACTA------T-TAAATAACATATAC--CCCCCCCT---CCCTA---AATCA-AACA-----ACGATTTGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-AAATA-----TATTGGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatataagaattgcctgttatagaaacctactattaaataacatatacccccccctccctaaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
gi|11 : agaattaacctatatattccataaacgctgaacgtacataagtttttaaaccaggatgggggtagggatacatgtatgaaaataatatttgatcatgacagcgtgaacgttatttaaagaactctcaatataagaattgcctgttatAAAGGTCATA--T--GA--AACCA-AC-CCGAAGAAATT-----GAG--TT---CC-CA--TGCGAATT-C-ATTAA--TCAAGGTTTAATTGA-ACAA---AA-TTCCTTTGT-T--A-AT-TCTTT-TCTCAA-TG-CAAGATAACTG-TCAA-TACAGC--TGAAT-CAA--AA---TGCT-GAT-CT-CGAAAATGA-TTTCGATTGAT-GCGG----CTGATCTACCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------TC--AAAACGACCCACAGTGATGTAAACCAAAA-------CAGT---T---TGT-AT-T-AAACAA-ATTATT--------CAGC-TG-C--A---TAAGCTTTTGAAAAATGCCAACAAATGTGCTA--CATT------TA------ATCGTATTCGTAGTAGTAGGCCGCAGAAGTTTTGGGC--GA-GTACCT-TGTCC----TGGG----TTCCAAATTT-GAA---GGAAAATGC-T--ATGCATGGT----TTCCAAATCTCCGT
gi|12 : aGTCACA--T--GA--AACAA-ATCCCGAAGAAATT-----TAG--TT---CTGCA--TGCAAATT-T-ATTAA--TCAAGGTTT-ATTGG-ACAAG--AA-TTCCTTTGT-T--A-CT-TTTTT-TCTCA
gi|12 : at-ATTATT--------CA-C-TG-T--A---T-AGC-TTTGAAAAATGCC-AT-AGTGCGCTA--CATT------TA------A------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGTACCTTTTTCCTGCATGGGGA--TCCCAAATTCAGAA---GAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattcactgtatagctttgaaaaatgccatagtgcgctacatttaatcgtagtagtaggccgcagaaggttttgactatgtacctttttcctgcatggggatcccaaattcagaagaaac
gi|13 : atgtcacatgaaacaaatcccgaagaaatttagttctgcatgcaaatttattaatcaaggtttattggacaagaattcctttgttactttttttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGTCACA--TTTGATAAAAGACATTTTGAG--AATT-----GAG--TT---ATTCA--TAGGAATT-C-ATTTATTTTAAG--TT-ATCAA-ACAAAGCAA-TTCA-TTGT-T-----T-TATTT-TTTCAA----AAATATAAC---TCAATTACCAC---G-AT-CCA--AATG-TATGGGAT-CTATGAAAATGA--TTCGG-TCGTCGCAGATATATAATCT---TTTGCTGG----T---------------------G---------------------CC---------------------G---------------------T----TT---------------------CAAAA--------AGA---T---T----T-C-CAACAGTCTTGTT-------------TG-C--A---T-AGC-TTTGGAAAATGAG-AC-CTTGTG---------------TG------A------TT------GTAGATCGC--------CAGAC--CATGTGATATTTCCC----AAGGGATTTTCC-AATCTAGAA---GGAAAA--CAT--ACG---GG-----TA-CAAATCc
gi|14 : tgGGTCGTAGAGGGTTGCGAC--CATGTACCTGGTTCC----TAGGGA--TCCCAAATTCAGAAAAAGAAAAAAAA-T--ACG---G------TAC-AAATTTA-GTA--CAGGCCGTTCTAGTTTCATATCTATTAAAGTA------ATACGAGCA-AC------ACTCA------CGTCCTCA---AAA------G--G---------TTT------TCTTGTCATCAATAATAAA--ATCT--AGATA--TA--TTAATATTGCAAACAAACCTTTCATTCTGGAA-TA------AAAAAA---A-----A-A-------GAAGTATCATTCAG-AATA-AT-------------A-----CCTA-TATTC----CACAT-GCTGC--AG----TGAAT------------T---TGT-T-----TA--------TTGGGGGAAAG-----------GAAAATAATATTTGTTC--AT
gi|15 : AAAGTCATA--T--GA--AACGATATTTTGGAGAAATT-----TTG--TT---TTGCA--TCGGAATT-C-ATTAA--ATAAGAATC-ATTG------------TT--TTTAT-C--ATAT-TTTAT-TC-AAA-TG-CAAGATAAC-G-TGAA-T-------CG-TT-CAA--AT-G-TACCCGGT-CA-CGAAAATGATCTTCGA-TGATCatgac
gi|15 : -C-TG-C--T---T-AGC-TTCGGTAAATTAC-AC-ATTTTCCTA--CAAC------TA------A------TTGTTATTATAGGTCGCAGAAGGTTGCGAC--CATGTGCGTATTTCC----TAGGGA--TTCCGAATTTAAAA---AGAAACA---T--ACG---GG-----TACccagattacccaactgtttgactctgcttagcttcggtaaattacacattttcctacaactaattgttattataggtcgcagaaggttgcgaccatgtgcgtatttcctagggattccgaatttaaaaagaaacatacgggtaca
gi|16 : aaagtcatatgaaacgatattttggagaaattttgttttgcatcggaattcattaaataagaatcattgtttttatcatattttattcaaatgcaagataacgtgaatcgttcaaatgtacccggtcacgaaaatgatcttcgatgatcccagattacccaactgtttgactCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTG-TGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGC---CCACTGTGATGT-AAAC-------TG--------CA-T-GGGC--C---T-AGC-TTTGAATAATACA-AC-AGTGTGCTAA-CATT------TACATGTAA------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCCAAA---AG-------AAAAAGC-T--ATG---GG-----TTTCTAATCT-CGTA---AAGCTAGCCGAGT---GTGTACAT----GTC------T------CT-ACACTCATACTCG------CG-CCTCA--------------------------TTA--TTTTCTTTTTATa
gi|17 : TA--T--GA--AACGA-TTTCCGAAAAAAAAAAAAAGAA--TT---ATGCA--TGGAAATT-TTATTTA--TCAAGATTT-ATTCA-AGAAG--AA-TTTCTTtct
gi|17 : A---------------------CAAAA-------CACT---T---CGT-AT-T-AA-CAA-ATTATT--------CA-C-TG-C--A---T-TGC-TTTGGAAAATGCC-AC-AATGTGTAA--CATT------Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaaacacttcgtattaacaaattattcactgcattgctttggaaaatgccacaatgtgtaacattt
gi|18 : tatgaaacgatttccgaaaaaaaaaaaaagaattatgcatggaaattttatttatcaagatttattcaagaagaatttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTG---GG-----TACCAAATATCAGTA--TGA---AACCTAAT---ATGTA-AT----GTA------G------AT-AC------ACTCA------TGTCCTCACTGAAAAGTATGG--AACT------TTTA--TTTTCTTATTATC-ACTGTTCGTTATCTTTGTCT--TTAAATCAATATTCTAAATAAACCTTTCATTCTGACATTT------AAAAAATCTAGAAGTA-TCATTTAGAAATTATCATTCAGAAATA-A--T-AAT-----TCA-----CATA-TAGTC----CATAT-ACTATAAAAACACTGAACGTAC-----GAGT---TAT-C-----TAGA--GGGGGTGGGGGTG
gi|19 : CCA---CCA-----AATCATGATA-----A--ATATGTAAAC------CAAGACATTAATTGAGGAGGGCTCAAGAAAAAACA--GACTGA-TTATGAAGAACCGTGCTTC-TGTAA--CTATTCGT-TTAAATA-AGAAAATACTTATAGGATTACCATTACAGTTTTAAGACATA-------------TTTTATTATGATTAATCATTAAAATGATATGCTACGGTACCAAATCTAGTAGATTTGGGCAATACGTGTTTGTAAGTTCGTGAATATGCCTA--ATACGTCTTCATCATTGGGAA-TCACGGGTTTTcgttgtaa
gi|2 : AAAGGTCATA--TAAGA--AACAA-ATCCCAAAGAAATT-----TAG--TT---CTGAAATTGCAAATT-C-ATTAAA-TCAAGGTTT-ATTGA-ACAAG--AAATTCCTTTGTCT--A-AT-TTTTT-TCTCAAATG-CAAGATACC-GGTCAA-TGCAGC--TA-AT-CAAGAAA-G-TGCTCGAT-TT-CGAAAATGATTTTCGA-TGATCGCGG----CGAATCTCT-TTTGCTGACAAAT---------------------G---------------------ACGTCCAAAAGACCCACAGTAATG---------------------T---AAA---------------------AAAAAAAAAAACCAGT---AAGAGGT-AT-T-TAACAA-ATTATTTCATTATTCA-C-TG-C--A---T-AGC-TTTGAAAAATGCC-A---GTTTGCTA--CATT------TA------A------TCGTAGTAGTAGGCCGAAGAAGGTTTTGAC--TAAGTACCTGTTTCC----TGGGGA--TCCCA------GAA---GAAAAAGGC-T--ATA----------TAGTAGAGGTC--TA--TAAGCTAGCCTAAC---ATGTCTCT----GTA------CA-----CTCGT------GCTCG------CGTCCTCA-T-------------------------TA--TGTTCTTGTTATCGACAATCAG--ATCC--AGCTAATTAAATTAATATTGTAAATAAACCTTTCAATCCGACA-TTA-----AAAAAAT-TT-----G-T-------GAAGTATCATTTAGAAAT
gi|20 : ATTCAGAA-------T-AAT-------A-----CCTA-TATTC----CACAT-GCTGC--AG----TGAAT------------T---TGT-T-----TA--------TTGGGGGAAAG-----------GAAAATAATATTTGTTCATATGACAt
gi|20 : AAATT----TA-GACATT-------TCGGGCGTGCGAAGAAGCAATAAATGGATTATGAAGAACCGTGAGTT-TGTGG--Tgcgggtacgtaaaataaagacctaagtaaatgcattacctgctgaagaattaaccacaaaaaacatgtaataaaaatatagaagaccccacccaaatttagacatttcgggcgtgcgaagaagcaataaatggattatgaagaaccgtgagtttgtggt
gi|21 : attcagaataatacctatattccacatgctgcagtgaatttgtttattgggggaaaggaaaataatatttgttcatatgacagcgggtacgtaaaataaagacctaagtaaatgcattacctgctgaagaattaaccacaaaaaacatgtaataaaaatatagaagaccccacccGGTCATA--T--GA--AACGA-TTTCCGAAGAAATT-----GAG--TT---ATGCA--TGGAATTT-C-ATTTA--TAAAGATTT-A-TGATACAAG--AA-TTCATTTG-----A-AT-TTTTT---TTAA-TG-CGAGA-AAC-G-TCGG----------------AA--A--------TGAT-CT-------------TCGG-TGATCGCGT----CTTATCTCCCATTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAA---------------------AAAGA-------C
gi|21 : --------CA-T-TG-CTGA---T-GAC-GTCAAAAAGACCC-AC-A-TGTGCTG--CATT-------A------A------TCGTAGTAGTAGGccacatgtgctgcattaatcgtagtagtagg
gi|22 : ggtcatatgaaacgatttccgaagaaattgagttatgcatggaatttcatttataaagatttatgatacaagaattcatttgaattttttttaatgcgagaaacgtcggaaatgatcttcggtgatcgcgtcttatctccACACAAAAAACATGTAA------T-TAAAATATAGAAGG--CACCCCAC---CAC-----AATTA-AAC-------------------TT----TA-GACATC-------TCGGGCGTGCGAAGAAGCAATAAATGG-TTATGAAGAACCGTGAGTT-TGTGG--T
gi|23 : aaacaatatttgatcttatgacagcgggtacgtaaaataaacaactataaagtaaatgcattacctgctgaagaattaaATCGCGG----CTTATTTCCGTTTGATAA----A---------------------G---------------------AC---------------------GTCAAAAATACCCATTGTGATAT---AAA---------------------CAAAAA------CAGT---T---TGT-AT-T-AA-CAA-AGTATT--------TA-C-TG-C--A---T-ATC-TTTGAAAAATGCC-AC-AGTGAGCTA--CAGG------TA------A------TCGTAGTAGTAGGTCGCAGAAGTTTGTGAC--CATGTACATCTTCTC----AAGGGA--TC
gi|24 : ---------TTTA--TCTTCTCAT-ATCAATAAT-AA--ATCC--AG---ATCAATTCA-TATTGTAAAAAATCCTTTCATTCTGAAA-TTCATAGAAGAAAAT-TA-----ATT-------AAAT--TCAT---GAAATGCAT-TGAATAATAATGA-----CCTATTATTC----CATATCACTAT--
gi|25 : agagcagatatctGAATTGC-AATAA--TTAAGCTGT-ATTAA-ACAAG--AA-TTTAATT-T-TAAA-ATATTTTT-TTAAAA-TG-CAAGA-AA-----------------TG-AT-GAA--GATGTTACTCGATGCA-C-ACAATGG-----GG-T--TCGTAA----CTTATCTCCC-TTGCTGA----T---------------------G----------------------C---------------------G---------------------TCCAAAA---------------------CGAAC-------CACT---G---TGC-TG-T-AAACAA-catacttaact
gi|26 : AAGGTGATA--T--GA--AACGA-TTTCCGAAAAAAAA-----AAGAATT---ATGCA--TGGGAATT-TTATTTA--TCAAGATTT-ATTCA-AGAAG--AA-TTTCTTTGT-T--A-AT-TTTT----TCAA-TG-CAAGATAAC-G-TCAG-TACAGCNTTG-ATATGA--AA-------CGAT-TTCCGAAAcaaa
gi|27 : TACAGTTTTTAGACATA-------------TTTTATTACGATTTATCAT--ACGTAGCATGTCACGGT-C--AATCTA-T-----------AAAC----TTGTAAGTTCGTGGGTACGCCTG--ATAAGGCTTCATCGTC-GGAATTCACGGGTTTT
gi|28 : GGTCATA--T--GA--AACAA-ATCCCAAAGAAATT-----TAG--TT---CTGCA--TGCCAATT-C-ATTAA--TCAAGGTTT-ATTGA-ACAAGA-AA-TTCCTTCGT-T--A-A--TTTTT-TCTCCA-TGCCAAGATAAC-G-TCAA-TAC
gi|3 : AA-----CCTA-TATTTTCGTCATTT--C--------CGCTGAACGTACATTTTACGT----GT-T-----ATAACCAGGGGTGGAGGTGGTG------GTATG------ATATTTGATC--ATGACAGCGGGAACGT--TA------TCTAAAGAAC
gi|3 : ACGCAAATACCCTACTAGTACTAT-TACAAAATATATACACCCCCCCTC---CCC-----AATCA-AACACTTGAACGATTTGTGAACTT----CA-GACATT-------GCGCGCTCGAAAGAAAACACTGACTGG-TTATGAAATACCGTACGTC-TGTGA--TTACTCATATCAAA-A-AGAAA-----TA--GGATTATTATTACAGTTTTTAGACATA-------------TTTTATTATGATTAATCAG--AAATAGCATGCCAAGGT-C--AATCTA-T-----------ATAC----TTGTAAGTTCATGAGTACGCCTAATATACGGCTTCtaatgtaaagaattacctgcgatagaattaaacgcaaataccctactagtactattacaaaatatatacaccccccctccccaatcaaacacttgaacgatttgtgaacttcagacattgcgcgctcgaaagaaaacactgactggttatgaaataccgtacgtctgtgattactcatatcaaaaagaaataggattattattacagtttttagacatattttattatgattaatcagaaatagcatgccaaggtcaatctatatacttgtaagttcatgagtacgcctaatatacggcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|30 : aacctatattttcgtcatttccgctgaacgtacattttacgtgttataaccaggggtggaggtggtggtatgatatttgatcatgacagcgggaacgttatctaaagaactaatgtaaagaattacctgcgatagaattaaAC--CCCCCCCC---CCC-----CATCA-AACACTTGAACGATTTATGAACTTAATTCA-GACATT-------TTGCGCTTGAGTGAAAACGCTTACTGG-TTATGAAATACCGTACGTC-TGTGA--Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacggcttttaatcctt
gi|31 : cTGTGAACTT----CA-GACATT-------GCGCGCTCGAA--------------GG-TTATGAAATACCGTCCGTC-TGTGA--TTATTCGTATCAAA-A-AGAAA-----TATAGGATTATTATTACAGTTTTTAGACATA-------------
gi|32 : ----T---------------------G---------------------AT---------------------T---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-ACCT-AAGCA------TT--------CA-C-TG-C--A---T-AAC-TTTGAAAAATACC-A---GTGTGCTG--CATT------TC------A------TTGTAATAGTAATTCGCAGAAGGTTGTG
gi|33 : cgGTC-TGTGA--TTATTCGTATCAAA-A-AAGAA-----AAAAGGATAATTATTA--GTTTTTAGACATACATGTACAATGCATTTTATTACGATTAATCAG--AAATAGCATG
gi|34 : CAGTTTTTAGACATACATTTTGTA----TTTTAGTACGATTAATCAT--AAATAGCATGTCACGGT-C--AATCTA-T-----------TTAC----TTGTAAGTTCGTGAGTACGCCTA--ATA
gi|36 : AAGGTAATA--T--GA--AACGATATTCTGAAGAAGCC-----GAG--TTAATTTG-----GGGAATT-C-ATTAA--TCAAGTTGT-GCTAC-ACAAA--AG-TTCATT
gi|37 : ttAAGGTCATAAAT--GA--AACGA-TTTCCGAAGAAATT-----GAG--TT---ACGCA--TGGGAATT-A-ATTTA--TC-ACATTT-ACTAC-ACAAG--AA-TTCC
gi|38 : AAGGTCATA--T--GA--AACGA-TTTCCAAAGAAATT-----GAG--TT---CTGCA--TGGGAATT-C-TTTTA--TCAAGATTT-ATTGA-ACAAA--Aa
gi|39 : AGAATGATCTTCGA-TGATCACGG----TTTATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---CAG---------------------AAAGA-------C
gi|4 : atcTAAAGGTCTAA--T--GA--AACAA-ATCC---------------------T---TTGC------GAATT-C-ACTAA--TCAAGGTTT-ATTGA-ACAAG--GA-TTCCTTTGT-T--A-TT-TTTTTCTCTCAA-TG-CAAGACAAC-G-TCAA-CATAGC--TG-CT-CAA--AA-G-TGTTCGAT-CT-CAAAAATGATTTTCGA-TGGTCGCGG----CTGATCTCTCTTTGCTGA----TGACGTCAAAACGACCCACAATG---------------------AT---------------------G---------------------T---AAA---------------------CAAAA-------CAGT---T---TGT-AT-T-AA-TAA-ATTATT--------CA-C-TG-C--A---T-AAC-TTTGAAAAATACC-AC-AGTGTTCTATACATT------TA------A------TCGTAAGAGTAGGCCACAAAAAGTTTTGTC--TATGTACCTTTTTCG----TGGGGA--TCCCACATTTAGAA---CAAACAAGC-T--ATG---CG-----TTTAAAATCTCCGTA--TAAGCTAGCCTAGTAG-GCCTACAT----GTT------C------CT-ACACTCGTACTCG------CGTCCTCA--------------------------TTA--TTTTCTTGTTATCGACAATAAA--ATTA--ATTTAATTAGATTAATATTGTAAATAAACATTTCATTCtcaccgtgatg
gi|41 : tTGTGCAT----GTT------T------CT-AC------ACTCGTACTCGCGTTCTCA-T-------------------------TA--TTTTCTTGTTAT
gi|42 : GTATCTCTTTCC----TAGGGA--TCCCAAATTTAAAA---GAAAAA
gi|5 : GTCATA--T--GA--AACAA-ATTCCGAAGAAATT-----GAG--TC---CTGCA--TGCCAGTT-C-ATTAA--TCAAGGCTT-ATTGA-ACAAG--AA-TTCCTTTGT-T--A-AT-TTTTT-TCTCAA-TG---------C-G-TCAA-TACAAC--TG-AT-GAA--AA-G-TGCTCGAT-TT-CCAAAATGATTTTCGA-GGGTCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CG----------------------------ACC--------CA-C-TA-C--AATTT-AGC-TTTGAAAAATGCC-AC-AGTGTGCTA--CATT------TA------A------TTGTAGTAGTAGGTCGCAGAAGGTTTTGACTATATGTACCTCTTTCC----TGGGGA--TCC-----------------AAAAGC-TACATG---GG-----TTTCAAATATCCGTATTTAAACTAA-----------GTACAT----GTC------T------CT-AC------A--------------CTCA-T-------------A---------CTCA--TTTTCTTGCTATTGACAATCAA--ATCA--AGCTAATTAAATCAATATTGTAAAT---------ATTGT-ATA-TT------AAAAAG-----------------------TATCATTCAGAAATA-A--T-AAT-----TAATCAGTCTTA-TATTg
gi|6 : AAGGTCATA--T--GA--AACGA-TTTCCGAAGAAATT-----AAG--TT---CTGCA--T------------------CAAGGTTT-ATTGA-ACAAG--AA-TTCCTTTGT-T--A-AT-TTTTT-TTTCAA-TG-CAAGATAAT-A-TCAG-TACAGC--TG-AT-CAA--AA-G-TGCTCGAT-CT-CGAAAATGATTTACAA-TGATTGCGG----CTGATCTCCCTTTGCTGA----T---------------------GACATCAAAACGGCCCACTGTGAT---------------------G---------------------T---AAA---------------------CAA---------CAGT---T---TGT-AT-T-GA-CAA-ATTATT--------CA-C-TG-C--A---T-ATC-TTTGAAAAATGC--A--AGTGTGCTA--CATT------TA------A------TCACAGTAGTAGGCCGCAGATGGTTGTGAG--TTTGTACCTCTTT-C----TGGGGA--TCCCAAATTTAGAA---GGAAAAAGC-T--ATG---GGTAGCCTACCAAATCTCCCTATTTTATTAAGGCTAGT---GTGTA-AT----ATA------G------CT-AC------ACTTG------CGTCCTCATTGAAA------GGTA---------TTTAACTTTTTTTTTTttcttt
gi|7 : TAAAGGTCATA--T--GA--AACAA-ATCCCGAAGAAATT-----GAG--TT---CTGCA--TGGGAATT-C-ATTAA--TCAAGGTTT-ATTGA-ACAAG--AA-TTTCTTTGT-T--A-AT-TTTTT-TCTTCT-CG-CAAGACAAC-A-TCAA-TACAGC--TG-AT-CAA--AA-G-TGCTCGAT-CT-CGAAAATGATTTTCGA-TGATCGCGG----CTGATCTCCCTTTGCTGA----T---------------------G---------------------AC---------------------G---------------------T---------------------------CAAAA-------CGGCCCAC---TGTGATGT-AAAC-------TG--------CA-TGGG-C--C---T-AGC-TTTGAATAATACA-AC-AGTGTGCTA--CATTTACATGTA------A------TCGTAGTAGTAGGCCGCAGAAGGTTTTGAC--TATGCACCTTTATCC----TGGGGA--TCCCAA------AA---GAAAAAAGC-T--ATG---GG-----TTTCTAATCTCCGTA--TAAGCTAGCCGAGT---GTGTACAT----GTACATGTCT------CT-ACACTCATACTCG------CGTCCTCA-Ttt
gi|8 : -AAT-----TAA-----CCTA-TATTT----CATAT-ACTCT--TAACTTTT-ATGTATGT---CAGTCG-TGT-T-----TACACCA-GGGTGGGGGTTGGA------GTAT-AAAATAATAGTCGATC--ATGACAtatttt
gi|8 : ctagTATATAATT--A--ACGCAAATAACTTACTA------T-TAAAAAA-ACATAC--CCCCCCCCGCCCCC-----AATCA-AAAC-----ACGATTTGGGAACTT----CG-GACATT-------GTGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAA-CCGTGCGTCCTGTGAAATTATTCGTATCAAA-ATAGAAA-----TA--AGATTATCATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAGCATGCCACGGT-C--AATCTA-T-----------ATAC----TTTTAAGTTCGCGAGTACGgcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgctatataattaacgcaaataacttactattaaaaaaacatacccccccccgcccccaatcaaaacacgatttgggaacttcggacattgtgggctcgaaagaaaacactgactggttatgaaaaccgtgcgtcctgtgaaattattcgtatcaaaatagaaataagattatcattacagtttttagacatattttattacgattaatcataaatagcatgccacggtcaatctatatacttttaagttcgcgagtacg
gi|9 : ctagaattaacctatatttcatatactcttaacttttatgtatgtcagtcgtgtttacaccagggtgggggttggagtataaaataatagtcgatcatgacagcgtggacgtttatttaaagaactaaaatgttttttttttaaaaaaagaaattacctgc-AAT-----TAA-----CCTA-TAT---------AT-TCCAT--AAACGCTGAACGTACAT---AAGT---T-T-T-----TAAACCAGGA-TGGGGGTAGGGATACATGTATGAAAATAATATTTGATC--ATGACA
gi|9 : agAGAAACCTACTA------T-TAATAA-CATATAC--CCCCCCCC---CCCTCCCTAATCA-AACA-----ACGATTTGTGAACTT----CA-GATATT-------GCGGGCTCGAAAGAAAACACTGACTGG-TTATGAAAAACCATGGGTC-TGTGA--TTATTCGTAT-AAA-A-AAATA-----TATTGGATTATTATTACAGTTTTTAGACATA-------------TTTTATTACGATTAATCAT--AAATAACATGCCACGGT-C--AATCTA-T-----------ATAC----TTGTACGCTCGTGAGTACGCCAA--ATACgcgtgaacgttatttaaagaactctcaatattaagaattgcctgttatagaaacctactattaataacatatacccccccccccctccctaatcaaacaacgatttgtgaacttcagatattgcgggctcgaaagaaaacactgactggttatgaaaaaccatgggtctgtgattattcgtataaaaaaatatattggattattattacagtttttagacatattttattacgattaatcataaataacatgccacggtcaatctatatacttgtacgctcgtgagtacgccaaatac
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AAAATAATATTTGATCATATGGCAACTGGGTACGTAAATTTAAGGACTAGAATGAAATGCAAGGAATTTAGAAAATAACATACTATTAAAAATTAGGCAAGACCCCATTCTCCAAA
Unaligned ( gi|35 ): CTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAATCCACGAGGTCGACGATGATACGGCTTTTAATCCTTA
Unaligned ( gi|40 ): CTACGGCTCTCACCTTGCTGATGTCGTCAAAACCACCGTGATGTAAACATTTTGAAATTTAACAAAATTA
Unaligned ( gi|43 ): AATCCACGATATCCGACGATGATACGGCTTTTAATCCTT