lowQualScore : 11111 1
lowQualScore : 4 9 66666 3 99 2 1 222 1 777 1 2 1 1 1 444 222 1 2 1 11 1 1 11 3333 11 33 0 1 1 0
lowQualScore : . . ..... . .. . . ... . ... . . . . . ... ... . . . .. . . .. .... .. .. . . . .
lowQualScore : 5 2 55555 1 44 7 9 999 4 000 3 7 3 3 3 777 111 2 9 2 77 2 9 77 8888 77 00 7 3 3 1
consensus : AGCTGAGGC-AAAAA--NAA-T-AT-CA-T---TTGC-TTCT---CAA-TTT-GT-TG-CAA-AAA--T---T-GAA-A--T-TTATG--GACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACCCC
Reference ( gi|4 ) : AGCTGGGGC-AAATA--TAA-T-AT-CA-T---TTGC-TTCT---CAA-TTT-GT-TG-CAA-AAA--T---T-GTA-A--T-TTATG--GACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGTACCCC
gi|6 : AACTGAGGC-AAAAA--TAA-T-AT-CA-T---TTGC-TTCT---CAA-TTT-GC-TG-CAA-AAT--T---T-GAA-A--T-TTATG--GAACT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGTACC
gi|10 : AGCTGGGGC-AAATA----A-T-AT-CA-T---TTGT-TTCT---TCA-TTT-GTATG-CAA-AAA--T---T-GTA-A--T-TTAT---GACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGTACC
gi|12 : aAGCTGAGAC-AAAAA--TGA-T-AT-CA-T---TTGC-TTCT---CAA-TTT-GT-TG-CAA-AAT--T---T-GAA-A--T-TTATG--GACCC----GTGAAGGA--GA-TTATGA---TAGT-A-ATGTAC
gi|3 : aAGCTGAGGC-AAAAA--TAC-T-AT-CA-TAATTTGC-TTCT---CAA-TTT-GT-TG-GAA-AAT--T---T-GAA-A--T-TTATG--GACCT----GAGAAGTA--GATTTATGA--TTA-T-A-ATGTACC
gi|11 : aAACCGAGGCCAAACA--AAA-T--T-CA-T---TTGC-TTCT---CAA-TTT-GT-TG-CAA-AAT--T---T-GAA-A--T-TTATG--GACCT----GTGAAGTA--GATTTATGA--TTACT-A-ATGCAC
gi|5 : AACCGAGGCCAAAGA--AAA-T--T-CA-T---TTGC-TTCT---CAA-TTT-GT-GG-C-A-AAA--T---T-TTACA--T-TTATG--GACCT----GTAAAGAA--GATTTATGA--TTAGT-A-ATGGACC
gi|14 : AGCTGAGGC-AAAAA--TAA-T-AT-CA-T---TTGC-TTCT---CGA-TTT-GT-T--CAA-AAA--T---T-GAA-C--T-TTAGG--GA-CT----GTGAAGGA--G-TTT-TGA--CTAAT-A-ATGCACt
gi|2 : AACCGAGGCCAAACA--AAA-T--T-CA-T---TTGC-TTCT---CAA-TTT-GT-TG-CAG-AAAATT---T-GAA-A--T-TTATG--GACCT----GTGAAGTA--GATTATTGA--TTACTAA-ATGCACCa
gi|15 : aAGCTGAGGC-AAAAA--GAAAT-TT-CA-T---TTGC-TTTT---CAA-TTT-GT-TG-CAA-AAA--T---T-TAA-A--T-TTATG--GATCT----GTGAA-----------------TAGT-A-ATGTATCCCt
gi|13 : taAACTGAGAC-AAA-A--TAA-A-AT-TAAT---TTGC-TTCT---CA--TTT-GT-TG-CAA-AAT--T---T-TAA-A--T-GTATG--GACCT----GTGA---A--GATTTTTGA--TTAGT-A-AGGCACC
gi|7 : aAACTGAGGC-CAAAA---AA-T-TT-CA-T---TTGC-TTCT---CAATTTT-GT-TG-C-A-AAT--T---T-GAA-A--T-TATTG--GAGCT----GTGATGAA--GATTTATGG--ATAGT-A-ATGCACCt
gi|1 : tGGC-AAAAAATTAA-TTATTCA-T---TTGCCTTCT---CAG-TTT-GT-TG-CAA-AAT--T---T-GAA-ACCT-TTATG--GAACT----GC-AAGGACGGA-TTATGAT-TTAAT-A-ATGTACCCC
gi|8 : a-AAATA--AAA---AT-AA-T---TTGC-CTCT---CAA-TTTTGT-TG-CAA-CAA--T---TTGAA-A--TATTATG---ACCT----GTGATGAA--GATTTATGA--TTAGT-ACATGCAACC
gi|20 : gaagct-CA-T---TTAC-TTCT---CAA-TTT-GT-TG-CAA-AAA--T---T-GAA-A--T-TC-TG--GATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ACGTAC
gi|17 : -CA-T---TTGC-TTCT---CA--TTT-CT-TG-CAA-AAT--T---T-GAA-A--T-TTTTG--GATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCAC
gi|24 : A-T---TTGC-TTCT---CAA-TTT-GT-TG-CAA-AAA--C---T-TTG-A--T-TGATG--GACCT----ATGAGGGA--GATTTATGA--TT--T-A-ATtt
gi|30 : A-T---TTGC-TTCT---CAA-TTTAGC-TG-----AAT--T---T-G-A-T--T-TTATG--GA-------GTGAAAGA--GATTTATGA--TTAaagg
gi|26 : aaaaatA-T---TTTC-CACA---CAA-TTT-GA-TT-CAA-AGA--T---T-TCT-A--T-TTGAA--GGTCT----TTGAAGGA--GGTTTAGGA--TGAAT-A-ag
gi|31 : g-T---TTGC-TTCT---CAA-TTT-AT-TG-CTA-AAT--T---T-GAA-A--T-TTATG--GACCA----GTGAAGAA--GATTTATGgg
gi|16 : cc-T---TTAC-TTTG---CAA-TTT--T-TGATAA-AAA--TAATT-GAA-A--T-TTGTT--TGCCT----GTGAAGGA--GATTTATGA--TTAAT-A-
gi|21 : gg-T---TTAC-TTCA---CAG-TT--GT-CA-CAA-AAA--T---T-GAA-C--T-TTGGG--GGCCT----GTGAGGGA--GATTTAGAA--TCAAT-A-AGGCATCgacact
gi|18 : g---TTGC-TTCT---CAA-TTT-TT-TG-CAA-AT---T---T-GAA-A--T-TTTTG--GATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCAC
gi|29 : ca---TTAC-TTCT---CAA-TTT-GT-TG-CAA-A----T---T-GAA-A--T-TC-TG--GATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ttc
gi|9 : ---TTGC-TTCT---CAA-TTT-GT-TG-CAA-AAA------T-GAA-A--T-TTGTA--GACTT----ATG-AGAA--GATTCATGATTTTAGT-A-ATACACCTCacgt
gi|28 : aactgaagcccaaaaaattggC-TTCT---CAG-TTT-GT-TG-CAA-AAT--T---T-GAA-A--T-TTATG--GACCT----GAGAAGGA--GATTTATGA--TTAGT-A-ATGTACCC
gi|25 : -TTCTGTACAA-TTT-GT-TG-CAA-AAA--T---T-GGA-C--T-TTGAA--GACCT----GCAAAGGA--GGTTTATGA--TCAAT-G-ATG
gi|27 : tt-TTCTGTACAA-TTT-GT-TG-CAA-AAA--T---T-GGA-C--T-TTGAA--GACCT----GCAAAGGA--GGTTTATGA--TCAAT-G-AGGCACgc
gi|22 : -TTCTACACAA-CTC-GA-TG-CAAAAAA--T---T-TTA-A--C-TC-TGAAGATCTG---GTGATGGA--GGTTTACGA--TCAAT-A-
gi|19 : ---CAA-TTC-AT-AG-CAA-AAT--T---T-TCA-A--T-TTGAA--GACCTAGCTGTGAAGGA--GGTTTTTGA--TCAAT-A-AGGCACCgacac
gi|23 : tctgca---CAA-TTT-GA-AG-CAA-CAA--T---T-GAA-A--C-TTGTG--GGCTT----TTGAAAAA--GATTTATGA--TCAAC-A-
gi|32 : taggcctacttaa-CAA-GAA--T---T-TTA-C--T-TTAAA--GACCT----GCGAAGGA--GGTTTATGA--TCAAT-A-AGGTACCa
gi|33 : tcAA--T---T-TTA-A--T-TTG-A--GACCT----GTGAAGGA--GGTACATGA--TCAAT-A-AGGCACC
gi|34 : c--T---T-G-A-A--T-TTATG--GACAT----ATGAAGCA--GATTTATGA---TAAT-A-AGGTACCCat
Alignments
lowQualScore : 11
lowQualScore : 5 2 7 666 2 22 2 222 1 666 1 2 1 1 777 222 1 11 1 0 3333 11 22 0 1 1
lowQualScore : . . . ... . .. . ... . ... . . . . ... ... . .. . . .... .. .. . . .
lowQualScore : 3 5 5 999 5 11 2 888 4 888 3 6 3 2 555 111 2 66 2 6 7777 66 99 4 2 2
consensus : AGCTGAGGC-AAA-A-AN--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GAAA--T-TTATGGACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACCCC
Reference ( family-1408 ) : AGCTGAGGC-AAA-A-AN--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GAAA--T-TTATGGACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACCCC
gi|1 : AGGC-AAA-A-AATTAA-TTATTCAT---TTGCCTTCT---CAG-TTT-GT-TG-CAAAAT--T---T-GAAACCT-TTATGGAACT----GC-AAGGACGGA-TTATGAT-TTAAT-A-ATGTACCCC
gi|10 : AGCTGGGGC-AAA----T--AA-T-AT-CAT---TTGT-TTCT---TCA-TTT-GTATG-CAAAAA--T---T-GTAA--T-TTATG-ACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGTACC
gi|11 : aAACCGAGGC-CAA-ACAA--AA-T--T-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAT--T---T-GAAA--T-TTATGGACCT----GTGAAGTA--GATTTATGA--TTACT-A-ATGCAC
gi|12 : AGCTGAGAC-AAA-A-AT--GA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAT--T---T-GAAA--T-TTATGGACCC----GTGAAGGA--GA-TTATGA---TAGT-A-ATGTAC
gi|13 : aAACTGAGAC-AAA-ATAA--AA-T--T-AAT---TTGC-TTCT---CA--TTT-GT-TG-CAAAAT--T---T-TAAA--T-GTATGGACCT----GTGA---A--GATTTTTGA--TTAGT-A-AGGCACC
gi|14 : aAGCTGAGGC-AAA-A-AT--AA-T-AT-CAT---TTGC-TTCT---CGA-TTT-GT-T--CAAAAA--T---T-GAAC--T-TTAGGGA-CT----GTGAAGGA--G-TTT-TGA--CTAAT-A-ATGCACt
gi|15 : AGCTGAGGC-AAA-A-AG--AAAT-TT-CAT---TTGC-TTTT---CAA-TTT-GT-TG-CAAAAA--T---T-TAAA--T-TTATGGATCT----GTGAA-----------------TAGT-A-ATGTATCCCa
gi|16 : taT---TTAC-TTTG---CAA-TTT--T-TGATAAAAA--TAATT-GAAA--T-TTGTTTGCCT----GTGAAGGA--GATTTATGA--TTAAT-A-AGACAC
gi|17 : gg-CAT---TTGC-TTCT---CA--TTT-CT-TG-CAAAAT--T---T-GAAA--T-TTTTGGATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACt
gi|18 : ---TTGC-TTCT---CAA-TTT-TT-TG-CAAAT---T---T-GAAA--T-TTTTGGATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACtt
gi|19 : ca---CAA-TTC-AT-AG-CAAAAT--T---T-TCAA--T-TTGAAGACCTAGCTGTGAAGGA--GGTTTTTGA--TCAAT-A-AGGCACCttc
gi|2 : tctgcaAACCGAGGC-CAA-ACAA--AA-T--T-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAGAAAATT---T-GAAA--T-TTATGGACCT----GTGAAGTA--GATTATTGA--TTACTAA-ATGCACC
gi|20 : a-CAT---TTAC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GAAA--T-TC-TGGATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ACGTACt
gi|21 : T---TTAC-TTCA---CAG-TT--GT-CA-CAAAAA--T---T-GAAC--T-TTGGGGGCCT----GTGAGGGA--GATTTAGAA--TCAAT-A-AGGCATC
gi|22 : g-TTCTACACAA-CTC-GA-TG-CAAAAAATT---T-TAAC--T-CTGAAGATCTG---GTGATGGA--GGTTTACGA--TCAAT-A-AGACAC
gi|23 : ---CAA-TTT-GA-AG-CAACAA--T---T-GAAA--C-TTGTGGGCTT----TTGAAAAA--GATTTATGA--TCAAC-A-
gi|24 : taggcctacttaaAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAACTT---T-G--A--T-TGATGGACCT----ATGAGGGA--GATTTATGA--TT--T-A-ATa
gi|25 : -TTCTGTACAA-TTT-GT-TG-CAAAAA--T---T-GGAC--T-TTGAAGACCT----GCAAAGGA--GGTTTATGA--TCAAT-G-ATGaagg
gi|26 : ttAT---TTTC-CACA---CAA-TTT-GA-TT-CAAAGA--T---T-TCTA--T-TTGAAGGTCT----TTGAAGGA--GGTTTAGGA--TGAAT-A-gc
gi|27 : g-TTCTGTACAA-TTT-GT-TG-CAAAAA--T---T-GGAC--T-TTGAAGACCT----GCAAAGGA--GGTTTATGA--TCAAT-G-AGGCACgg
gi|28 : C-TTCT---CAG-TTT-GT-TG-CAAAAT--T---T-GAAA--T-TTATGGACCT----GAGAAGGA--GATTTATGA--TTAGT-A-ATGTACCC
gi|29 : ---TTAC-TTCT---CAA-TTT-GT-TG-CAAA----T---T-GAAA--T-TC-TGGATCT----GTGAAGGA--GATTTATGA--TTAGT-A-
gi|3 : AGCTGAGGC-AAA-A-AT--AC-T-AT-CATAATTTGC-TTCT---CAA-TTT-GT-TG-GAAAAT--T---T-GAAA--T-TTATGGACCT----GAGAAGTA--GATTTATGA--TTA-T-A-ATGTACCacgt
gi|30 : a-A-AA--AA-T-AT-------TTGC-TTCT---CAA-TTTAGC-TG-----AA--T---T-TGAT--T-TTATGGA-------GTGAAAGA--GATTTATGA--TTA
gi|31 : T---TTGC-TTCT---CAA-TTT-AT-TG-CTAAAT--T---T-GAAA--T-TTATGGACCA----GTGAAGAA--GATTTATGag
gi|32 : cc-CAAGAA--T---T-TTAC--T-TTAAAGACCT----GCGAAGGA--GGTTTATGA--TCAAT-A-AGGTACC
gi|33 : tcAA--T---T-TTAA--T-TTG-AGACCT----GTGAAGGA--GGTACATGA--TCAAT-A-AGGCACC
gi|34 : c--T---T-GAA---T-TTATGGACAT----ATGAAGCA--GATTTATGA---TAAT-A-AGGTACCCat
gi|4 : ttAGCTGGGGC-AAA-T-AT--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GTAA--T-TTATGGACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGTACCCC
gi|5 : AACCGAGGCCAAA-G-AA--AA-T--T-CAT---TTGC-TTCT---CAA-TTT-GT-GG-CAAAAT--T---T-TACA--T-TTATGGACCT----GTAAAGAA--GATTTATGA--TTAGT-A-ATGGACC
gi|6 : AACTGAGGC-AAA-A-AT--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GC-TG-CAAAAT--T---T-GAAA--T-TTATGGAACT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGTACCt
gi|7 : AACTGAGGC-CAA-A-A---AA-T-TT-CAT---TTGC-TTCT---CAATTTT-GT-TG-C-AAAT--T---T-GAAA--T-TATTGGAGCT----GTGATGAA--GATTTATGG--ATAGT-A-ATGCACC
gi|8 : tGAAGCTAAATA-AA--AA-T-A---AT---TTGC-CTCT---CAA-TTTTGT-TG-CAACAA--T---TTGAAA--TATTATG-ACCT----GTGATGAA--GATTTATGA--TTAGT-ACATGCAACC
gi|9 : AACTGAAGC-CCA-A-AA--AA-T----TGG---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA------T-GAAA--T-TTGTAGACTT----ATG-AGAA--GATTCATGATTTTAGT-A-ATACACCTC
Alignments
lowQualScore : 11
lowQualScore : 5 2 7 666 2 22 2 222 1 666 1 2 1 1 777 222 1 11 1 0 3333 11 22 0 1 1
lowQualScore : . . . ... . .. . ... . ... . . . . ... ... . .. . . .... .. .. . . .
lowQualScore : 3 5 5 999 5 11 2 888 4 888 3 6 3 2 555 111 2 66 2 6 7777 66 99 4 2 2
consensus : AGCTGAGGC-AAA-A-AN--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GAAA--T-TTATGGACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACCCC
Reference ( family-1408 ) : AGCTGAGGC-AAA-A-AN--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GAAA--T-TTATGGACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACCCC
gi|1 : AGGC-AAA-A-AATTAA-TTATTCAT---TTGCCTTCT---CAG-TTT-GT-TG-CAAAAT--T---T-GAAACCT-TTATGGAACT----GC-AAGGACGGA-TTATGAT-TTAAT-A-ATGTACCCC
gi|10 : AGCTGGGGC-AAA----T--AA-T-AT-CAT---TTGT-TTCT---TCA-TTT-GTATG-CAAAAA--T---T-GTAA--T-TTATG-ACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGTACC
gi|11 : aAACCGAGGC-CAA-ACAA--AA-T--T-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAT--T---T-GAAA--T-TTATGGACCT----GTGAAGTA--GATTTATGA--TTACT-A-ATGCAC
gi|12 : AGCTGAGAC-AAA-A-AT--GA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAT--T---T-GAAA--T-TTATGGACCC----GTGAAGGA--GA-TTATGA---TAGT-A-ATGTAC
gi|13 : aAACTGAGAC-AAA-ATAA--AA-T--T-AAT---TTGC-TTCT---CA--TTT-GT-TG-CAAAAT--T---T-TAAA--T-GTATGGACCT----GTGA---A--GATTTTTGA--TTAGT-A-AGGCACC
gi|14 : aAGCTGAGGC-AAA-A-AT--AA-T-AT-CAT---TTGC-TTCT---CGA-TTT-GT-T--CAAAAA--T---T-GAAC--T-TTAGGGA-CT----GTGAAGGA--G-TTT-TGA--CTAAT-A-ATGCACt
gi|15 : AGCTGAGGC-AAA-A-AG--AAAT-TT-CAT---TTGC-TTTT---CAA-TTT-GT-TG-CAAAAA--T---T-TAAA--T-TTATGGATCT----GTGAA-----------------TAGT-A-ATGTATCCCa
gi|16 : taT---TTAC-TTTG---CAA-TTT--T-TGATAAAAA--TAATT-GAAA--T-TTGTTTGCCT----GTGAAGGA--GATTTATGA--TTAAT-A-AGACAC
gi|17 : gg-CAT---TTGC-TTCT---CA--TTT-CT-TG-CAAAAT--T---T-GAAA--T-TTTTGGATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACt
gi|18 : ---TTGC-TTCT---CAA-TTT-TT-TG-CAAAT---T---T-GAAA--T-TTTTGGATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACtt
gi|19 : ca---CAA-TTC-AT-AG-CAAAAT--T---T-TCAA--T-TTGAAGACCTAGCTGTGAAGGA--GGTTTTTGA--TCAAT-A-AGGCACCttc
gi|2 : tctgcaAACCGAGGC-CAA-ACAA--AA-T--T-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAGAAAATT---T-GAAA--T-TTATGGACCT----GTGAAGTA--GATTATTGA--TTACTAA-ATGCACC
gi|20 : a-CAT---TTAC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GAAA--T-TC-TGGATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ACGTACt
gi|21 : T---TTAC-TTCA---CAG-TT--GT-CA-CAAAAA--T---T-GAAC--T-TTGGGGGCCT----GTGAGGGA--GATTTAGAA--TCAAT-A-AGGCATC
gi|22 : g-TTCTACACAA-CTC-GA-TG-CAAAAAATT---T-TAAC--T-CTGAAGATCTG---GTGATGGA--GGTTTACGA--TCAAT-A-AGACAC
gi|23 : ---CAA-TTT-GA-AG-CAACAA--T---T-GAAA--C-TTGTGGGCTT----TTGAAAAA--GATTTATGA--TCAAC-A-
gi|24 : taggcctacttaaAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAACTT---T-G--A--T-TGATGGACCT----ATGAGGGA--GATTTATGA--TT--T-A-ATa
gi|25 : -TTCTGTACAA-TTT-GT-TG-CAAAAA--T---T-GGAC--T-TTGAAGACCT----GCAAAGGA--GGTTTATGA--TCAAT-G-ATGaagg
gi|26 : ttAT---TTTC-CACA---CAA-TTT-GA-TT-CAAAGA--T---T-TCTA--T-TTGAAGGTCT----TTGAAGGA--GGTTTAGGA--TGAAT-A-gc
gi|27 : g-TTCTGTACAA-TTT-GT-TG-CAAAAA--T---T-GGAC--T-TTGAAGACCT----GCAAAGGA--GGTTTATGA--TCAAT-G-AGGCACgg
gi|28 : C-TTCT---CAG-TTT-GT-TG-CAAAAT--T---T-GAAA--T-TTATGGACCT----GAGAAGGA--GATTTATGA--TTAGT-A-ATGTACCC
gi|29 : ---TTAC-TTCT---CAA-TTT-GT-TG-CAAA----T---T-GAAA--T-TC-TGGATCT----GTGAAGGA--GATTTATGA--TTAGT-A-
gi|3 : AGCTGAGGC-AAA-A-AT--AC-T-AT-CATAATTTGC-TTCT---CAA-TTT-GT-TG-GAAAAT--T---T-GAAA--T-TTATGGACCT----GAGAAGTA--GATTTATGA--TTA-T-A-ATGTACCacgt
gi|30 : a-A-AA--AA-T-AT-------TTGC-TTCT---CAA-TTTAGC-TG-----AA--T---T-TGAT--T-TTATGGA-------GTGAAAGA--GATTTATGA--TTA
gi|31 : T---TTGC-TTCT---CAA-TTT-AT-TG-CTAAAT--T---T-GAAA--T-TTATGGACCA----GTGAAGAA--GATTTATGag
gi|32 : cc-CAAGAA--T---T-TTAC--T-TTAAAGACCT----GCGAAGGA--GGTTTATGA--TCAAT-A-AGGTACC
gi|33 : tcAA--T---T-TTAA--T-TTG-AGACCT----GTGAAGGA--GGTACATGA--TCAAT-A-AGGCACC
gi|34 : c--T---T-GAA---T-TTATGGACAT----ATGAAGCA--GATTTATGA---TAAT-A-AGGTACCCat
gi|4 : ttAGCTGGGGC-AAA-T-AT--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GTAA--T-TTATGGACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGTACCCC
gi|5 : AACCGAGGCCAAA-G-AA--AA-T--T-CAT---TTGC-TTCT---CAA-TTT-GT-GG-CAAAAT--T---T-TACA--T-TTATGGACCT----GTAAAGAA--GATTTATGA--TTAGT-A-ATGGACC
gi|6 : AACTGAGGC-AAA-A-AT--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GC-TG-CAAAAT--T---T-GAAA--T-TTATGGAACT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGTACCt
gi|7 : AACTGAGGC-CAA-A-A---AA-T-TT-CAT---TTGC-TTCT---CAATTTT-GT-TG-C-AAAT--T---T-GAAA--T-TATTGGAGCT----GTGATGAA--GATTTATGG--ATAGT-A-ATGCACC
gi|8 : tGAAGCTAAATA-AA--AA-T-A---AT---TTGC-CTCT---CAA-TTTTGT-TG-CAACAA--T---TTGAAA--TATTATG-ACCT----GTGATGAA--GATTTATGA--TTAGT-ACATGCAACC
gi|9 : AACTGAAGC-CCA-A-AA--AA-T----TGG---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA------T-GAAA--T-TTGTAGACTT----ATG-AGAA--GATTCATGATTTTAGT-A-ATACACCTC
blockSeqs : C T C T A A . AAT . ACA T A A A AAT AAT T . A AGCT . TT A C
blockSeqs : T . T A . A . . . GTA . T . . AAT . . . . G . . . .
blockSeqs : . . C T . A . . . GTA . . . . ACT . . . . . . . . .
blockSeqs : . . . A . T . . . . . . . . A . . . . . . . . .
blockSeqs : . . . T . A . . . . . . . . T . . . . . . . . .
blockSeqs : . . . G . A . . . . . . . . T . . . . . . . . .
blockSeqs : . . . A . A . . . . . . . . T . . . . . . . . .
blockSeqs : . . . T . A . . . . . . . . A . . . . . . . . .
blockSeqs : . . . A . T . . . . . . . . A . . . . . . . . .
blockSeqs : . . . T . A . . . . . . . . A . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . T . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . T . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . A . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : N** A* ** ** **
originalCons : AGCTGAGGC-AAA-A-AN--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GAAA--T-TTATGGACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACCCC
finalCons : AGCTGAGGC-AAA-A-AN--AA-TA-T-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GAAA--T-TTATGGACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACCCC
Alignments
lowQualScore : 11
lowQualScore : 5 2 7 666 2 22 2 222 1 666 1 2 1 1 777 222 1 11 1 0 3333 11 22 0 1 1
lowQualScore : . . . ... . .. . ... . ... . . . . ... ... . .. . . .... .. .. . . .
lowQualScore : 3 5 5 999 5 11 2 888 4 888 3 6 3 2 555 111 2 66 2 6 7777 66 99 4 2 2
consensus : AGCTGAGGC-AAA-A-AN--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GAAA--T-TTATGGACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACCCC
Reference ( family-1408 ) : AGCTGAGGC-AAA-A-AN--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GAAA--T-TTATGGACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACCCC
gi|1 : AGGC-AAA-A-AATTAA-TTATTCAT---TTGCCTTCT---CAG-TTT-GT-TG-CAAAAT--T---T-GAAACCT-TTATGGAACT----GC-AAGGACGGA-TTATGAT-TTAAT-A-ATGTACCCC
gi|10 : AGCTGGGGC-AAA----T--AA-T-AT-CAT---TTGT-TTCT---TCA-TTT-GTATG-CAAAAA--T---T-GTAA--T-TTATG-ACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGTACC
gi|11 : aAACCGAGGC-CAA-ACAA--AA-T--T-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAT--T---T-GAAA--T-TTATGGACCT----GTGAAGTA--GATTTATGA--TTACT-A-ATGCAC
gi|12 : AGCTGAGAC-AAA-A-AT--GA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAT--T---T-GAAA--T-TTATGGACCC----GTGAAGGA--GA-TTATGA---TAGT-A-ATGTAC
gi|13 : aAACTGAGAC-AAA-ATAA--AA-T--T-AAT---TTGC-TTCT---CA--TTT-GT-TG-CAAAAT--T---T-TAAA--T-GTATGGACCT----GTGA---A--GATTTTTGA--TTAGT-A-AGGCACC
gi|14 : aAGCTGAGGC-AAA-A-AT--AA-T-AT-CAT---TTGC-TTCT---CGA-TTT-GT-T--CAAAAA--T---T-GAAC--T-TTAGGGA-CT----GTGAAGGA--G-TTT-TGA--CTAAT-A-ATGCACt
gi|15 : AGCTGAGGC-AAA-A-AG--AAAT-TT-CAT---TTGC-TTTT---CAA-TTT-GT-TG-CAAAAA--T---T-TAAA--T-TTATGGATCT----GTGAA-----------------TAGT-A-ATGTATCCCa
gi|16 : taT---TTAC-TTTG---CAA-TTT--T-TGATAAAAA--TAATT-GAAA--T-TTGTTTGCCT----GTGAAGGA--GATTTATGA--TTAAT-A-AGACAC
gi|17 : gg-CAT---TTGC-TTCT---CA--TTT-CT-TG-CAAAAT--T---T-GAAA--T-TTTTGGATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACt
gi|18 : ---TTGC-TTCT---CAA-TTT-TT-TG-CAAAT---T---T-GAAA--T-TTTTGGATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGCACtt
gi|19 : ca---CAA-TTC-AT-AG-CAAAAT--T---T-TCAA--T-TTGAAGACCTAGCTGTGAAGGA--GGTTTTTGA--TCAAT-A-AGGCACCttc
gi|2 : tctgcaAACCGAGGC-CAA-ACAA--AA-T--T-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAGAAAATT---T-GAAA--T-TTATGGACCT----GTGAAGTA--GATTATTGA--TTACTAA-ATGCACC
gi|20 : a-CAT---TTAC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GAAA--T-TC-TGGATCT----GTGAAGGA--GATTTATGA--TTAGT-A-ACGTACt
gi|21 : T---TTAC-TTCA---CAG-TT--GT-CA-CAAAAA--T---T-GAAC--T-TTGGGGGCCT----GTGAGGGA--GATTTAGAA--TCAAT-A-AGGCATC
gi|22 : g-TTCTACACAA-CTC-GA-TG-CAAAAAATT---T-TAAC--T-CTGAAGATCTG---GTGATGGA--GGTTTACGA--TCAAT-A-AGACAC
gi|23 : ---CAA-TTT-GA-AG-CAACAA--T---T-GAAA--C-TTGTGGGCTT----TTGAAAAA--GATTTATGA--TCAAC-A-
gi|24 : taggcctacttaaAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAACTT---T-G--A--T-TGATGGACCT----ATGAGGGA--GATTTATGA--TT--T-A-ATa
gi|25 : -TTCTGTACAA-TTT-GT-TG-CAAAAA--T---T-GGAC--T-TTGAAGACCT----GCAAAGGA--GGTTTATGA--TCAAT-G-ATGaagg
gi|26 : ttAT---TTTC-CACA---CAA-TTT-GA-TT-CAAAGA--T---T-TCTA--T-TTGAAGGTCT----TTGAAGGA--GGTTTAGGA--TGAAT-A-gc
gi|27 : g-TTCTGTACAA-TTT-GT-TG-CAAAAA--T---T-GGAC--T-TTGAAGACCT----GCAAAGGA--GGTTTATGA--TCAAT-G-AGGCACgg
gi|28 : C-TTCT---CAG-TTT-GT-TG-CAAAAT--T---T-GAAA--T-TTATGGACCT----GAGAAGGA--GATTTATGA--TTAGT-A-ATGTACCC
gi|29 : ---TTAC-TTCT---CAA-TTT-GT-TG-CAAA----T---T-GAAA--T-TC-TGGATCT----GTGAAGGA--GATTTATGA--TTAGT-A-
gi|3 : AGCTGAGGC-AAA-A-AT--AC-T-AT-CATAATTTGC-TTCT---CAA-TTT-GT-TG-GAAAAT--T---T-GAAA--T-TTATGGACCT----GAGAAGTA--GATTTATGA--TTA-T-A-ATGTACCacgt
gi|30 : a-A-AA--AA-T-AT-------TTGC-TTCT---CAA-TTTAGC-TG-----AA--T---T-TGAT--T-TTATGGA-------GTGAAAGA--GATTTATGA--TTA
gi|31 : T---TTGC-TTCT---CAA-TTT-AT-TG-CTAAAT--T---T-GAAA--T-TTATGGACCA----GTGAAGAA--GATTTATGag
gi|32 : cc-CAAGAA--T---T-TTAC--T-TTAAAGACCT----GCGAAGGA--GGTTTATGA--TCAAT-A-AGGTACC
gi|33 : tcAA--T---T-TTAA--T-TTG-AGACCT----GTGAAGGA--GGTACATGA--TCAAT-A-AGGCACC
gi|34 : c--T---T-GAA---T-TTATGGACAT----ATGAAGCA--GATTTATGA---TAAT-A-AGGTACCCat
gi|4 : ttAGCTGGGGC-AAA-T-AT--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA--T---T-GTAA--T-TTATGGACCT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGTACCCC
gi|5 : AACCGAGGCCAAA-G-AA--AA-T--T-CAT---TTGC-TTCT---CAA-TTT-GT-GG-CAAAAT--T---T-TACA--T-TTATGGACCT----GTAAAGAA--GATTTATGA--TTAGT-A-ATGGACC
gi|6 : AACTGAGGC-AAA-A-AT--AA-T-AT-CAT---TTGC-TTCT---CAA-TTT-GC-TG-CAAAAT--T---T-GAAA--T-TTATGGAACT----GTGAAGGA--GATTTATGA--TTAGT-A-ATGTACCt
gi|7 : AACTGAGGC-CAA-A-A---AA-T-TT-CAT---TTGC-TTCT---CAATTTT-GT-TG-C-AAAT--T---T-GAAA--T-TATTGGAGCT----GTGATGAA--GATTTATGG--ATAGT-A-ATGCACC
gi|8 : tGAAGCTAAATA-AA--AA-T-A---AT---TTGC-CTCT---CAA-TTTTGT-TG-CAACAA--T---TTGAAA--TATTATG-ACCT----GTGATGAA--GATTTATGA--TTAGT-ACATGCAACC
gi|9 : AACTGAAGC-CCA-A-AA--AA-T----TGG---TTGC-TTCT---CAA-TTT-GT-TG-CAAAAA------T-GAAA--T-TTGTAGACTT----ATG-AGAA--GATTCATGATTTTAGT-A-ATACACCTC