lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3333 11 44444 1111 2222222222 11 999999999999999999999999999999999999999999999999999999999999999999999999 1 1 222222 222 1 222222 111 00000000000000000000000000000 2222222 11 3 1 55555555 666666666666666666666666666666666666666 1111 111 1 1111111111 666666666666666666 11111 11 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 22 1 11 22 22 555555555555555555555 1 222 1 1 1 11 11111 2 333 2222222 2 2222 55555555555555555555555555555555555555555555555555555555555555555555 11111 6666666 1 2
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 1111 5 3 777 1 2 4 4 00 9 00000 66 66 7777 99 11 9999999999 4 0 00 0 4 5 444444444444444444444444444444444444444444444444444444444444444444444444 4 999999 2 5 0 99 1 2 0 2 3 8 555555 111 1 444444 111 3 77777777777777777777777777777 6 5555555 88 2 0 8 3 5 44444444 999999999999999999999999999999999999999 7777 6 555 3 5 2 5 5555555555 66 5 000000000000000000 0 55555 7 44 3 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 11 6 5 6 22 33 00 444444444444444444444 2 555 0 3 1 0 3 6 6 5 66 66 44 77777 7 0 6 4 111 6666666 9 2 4 1 6666 99 88888888888888888888888888888888888888888888888888888888888888888888 22222 5555555 5 4 6 0 55
lowQualScore : ................................................................................................................................... . .... . . ... . . . . .. . ..... .. .. .... .. .. .......... . . .. . . . ........................................................................ . ...... . . . .. . . . . . . ...... ... . ...... ... . ............................. . ....... .. . . . . . ........ ....................................... .... . ... . . . . .......... .. . .................. . ..... . .. . ................................................................................... . .. . . . .. .. .. ..................... . ... . . . . . . . . .. .. .. ..... . . . . ... ....... . . . . .... .. .................................................................... ..... ....... . . . . ..
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 4444 0 5 888 8 4 4 4 66 4 22222 11 11 6666 11 00 1111111111 4 7 11 9 5 0 444444444444444444444444444444444444444444444444444444444444444444444444 0 333333 7 3 8 22 0 7 7 2 3 3 555555 000 4 777777 777 2 22222222222222222222222222222 7 8888888 88 0 8 2 2 8 66666666 888888888888888888888888888888888888888 5555 7 555 2 4 7 0 3333333333 99 7 555555555555555555 7 22222 0 55 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 00 0 0 0 00 00 00 777777777777777777777 3 000 7 3 0 7 7 7 0 0 77 77 00 77777 7 7 7 0 333 5555555 6 5 5 2 8888 22 55555555555555555555555555555555555555555555555555555555555555555555 22222 0000000 7 7 0 7 55
consensus : NNAAATGACTGT--G--ATG--C--G--C-GTAC--A-GTGTGT--GT--GTTGT-G-GTGTCT-GTGCTTG-----------TT--TCA-----GCT-----TT-CAG-C-TC-CACC--NCTGGATA---GCAG-NN-TCGCTGCGAAAANG-GAA-GCNG---AGTGCGTAAGTCT-T-C--CCTGCCAG--NT-A--TA--GCCTCTCANACAGTAAGACCTATGTGGCCCAGATATGGGAT-CCTCCNCGAGGTAACAGA-TGGTAACTGG-GC---ACC--GCGGC-----CC--CAG-GCAGAACCGCA------------AGG--TCTCGGAGGAA----GGCCCCTAGATGCGTGG-CATGCNAGGCCCA--CCGGCGTGTGGATATGCCCTGATGCCTGCAAACCTAGT----CCCCAGCTA-TGGGT-AAATAGC-----NCCACTG---CCTTGTGGGTGG------TNNTCGG-AG-A--T-A--CAA-AGGCTAT------GGGAGAAAACCCAGACAGAAAATCCGGANAGATGGAATTCGTCAGCAAAGAAACCGCAATCGTCTA------AGGG-AAAGAAAA-CCCAGACAGAAAACCCT--AACCT-CNAG-GTGC-GAGGTTGAGCGTNGGGCTAAT--CC-----CCCC-ACCTCGG-AAAAA-A-----ACANGA-----TTACGGAAACCNCGAGCAAGTCAAATNNTNTTTCTCGTCTAAGANNNGAAGAAGAACAGAC---CAACAAAACCCGAA-AGCAGC----AGATGACGCGA--AAGCCGACGGAGCCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAAACCCCAAGTTCACCAGGAGAATTGAAACACGGAACGT-NAGAACAATGTATGCCACTGGGA-AACAGC-CAAGTTGC--GAAAGAAATGA-AGAACTATCGTNTAGACATACTAGG-AT-AGCGAAAGCAGATGGACAGG-GTCNGGANAAATCAAAATT-ACANCTGGT-AGACN------ATCATTTACTCCGGAAGA--TCAGACGAC---C-A-CA-G-C-AG-TGGAGT----AGCGACNACGACGANTAAAGAAAC--ANCAA-AGTCATTGTAT-GAA-TGGGCACCTATCAGTAACCGAATAATAACANNAT
Reference ( gi|3 ) : TCAAATGACTGT--G--ATG--C--G--CAGTACTTA-GTGTG---GT--TTTGT-G-GTGTCA-ATGCTTAA-------A--TTGATCA-----GCTCAAAGTT-CAG-A-TC-CACC--TCTGGCTA---GCAG-AGATGTCTGCGAAAACA-GAA-GCAG---AGTGTGTAGGTCT-T-C--CCTACCAG--G--A--TA--GCCTCTCAAACAGTAAGACCTGTGTGGCCCAGATATGGGAT-CCCCCATGAGGTGACAGA-TGGTAACTGG-GG---ATC-----GC-----TC--CAG-TTAAAACCACA------------GGG--TTT------------GGCCCCCAGATGCGTGA-TATACAAGACCCA--CCGGTGAGTGGACATGCCCTGGTGCCCGCAAACCAAAC----CCCCAGCTA-GAGGT-AAATAGT-----ACCACTG---CCTTGTGGGTAG------TAATCGGTAG-A--T-A--CAA-AGGCTAC------GGGAGCAAACCCA-ACAGAAAACCCGGACAGATGGAGTTCGTAAGCAGCGTAATCGCAATCGTCTA------AGGG-AATGAAAACCCCAAACAG-AAGCAC---AACCC-CGAG-GTAC-AAGGTTGATCGTAGGGCCAAT--CC-----CCCT-ACCTCGG-AAAAACA----CACAAGA-----TTACGGAAACCTTGATCAAGTCAAATAGTAT------TCAAAGAGTGG--GAAGACCAGCCATTCAACGCGACCCAAATAGAGGCGTAAAGATGACGTGGACAAGTCAA---ACCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCCAACCCCAAAGTTACAAGAAAGATTGGTACATGGAACGT-GAGAACAATGTATGTCACCGGGATAACAGCTCAAATTGC--CAGAGAAATGA-AGAATTACCATCTAGACATCCTAGGAATCAACGAAAGCAGGCGGACAGG-GCCTGGAAAGATCAAAATT-ACATCTGGTGAGACA------ATCATATACTCTGGCAGA--ACAGATGAC---C-A-CA-G-C-AG-TGGCGT----AGCTATAATGATGAGCAACGAAGC--AGCAATAG-CACTAGAT-GAA-TGGGCACC-------AAACGATTAGTAGCATCAT
gi|2 : AAATGACTGT--G---TGA-C--A--C-GTAC--A-GTGTGTGTGT--GTTGT-G-GTGTCT-GTGCTTGACACTTTCG--TTT-TCA-----GCT---AGC--CA-------CACC--GCTGGATA---GCAG-CT-TG-CTGTGAAA-TG-GAA-GCAG---AATGAGTCGGTCT-T-C--CCTTCCAA--CT-A--TA--GCCTCTCA--TAGTAAGACCTATGTGACCCAGATATGGGAT-CCTCCACAAGG-GGCAGA-CGGTAACTGG-GC---ACCCTGCGGC-----CCGGCCG-GCAGAATCACA------------AGG--TCTAGGAGGAATCTAGGCCCCTAGATGCATGG-TAAACCAGGCCAA--CAGGCGTGTAGATATGCCCTGATACCTGCAAACCTAGA----TCGCAACTA-TGGATCAAATAGT-----TCCACTG---CCTTGTGGATGG------TTTTTGG----A--T-AGTCAA-AGGCTACTTATATGGAAGTAAATCCAGACAGAAAATCCGGGTAGATAGAACTCGTCAGCAA---AA--GCTATCGTCTAACCACTACAG-AA--AAAA----AAGCTG---GCCCTCTAAACT-CAAG-GGGC-A-----GAACGTAGGGTTAAT--CA-----CCCA-ACCTCGGTAAAAAAAAAATCCTGAGA-----TTACAGAAACATCGCTAAAG-CAAACAATCTTTCTCGTCTAAGACTTGAAAAAGAACAGAC---CAACAAAACCCGAA-AGCAGC----AGATGACGCGA--AAGCCGACGGAGCCAAA
gi|11 : AAATGACTGT--GG-ACG--CTTA--CAGT------GTGTG---GT--GTTGT-G-GTGTCGTGTGCTTGC-------CCCTT--TC------GCT-----TT-CAG----C-AACCAGT-TGGATAA--GCA--AGCTTGCTGTGAAGAGC-GAA-GCAG---AATGAGTCAGTCT-T-CG-TCTTCCAACTA--A--TA--GCCT-TCATACAGTAAGACCTATGTGACCCAGATATGGGAT-TCCCAACGAGGTGACAGA-CGGTAAtataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacacaattatttactctggaaatagcagcccagatgatcacatgagaagggagttgcatttctaatgaaaataaaatctaaaaagtctttactgcaatggaatcccattttacctagaattattacagcaagattcaactctagttttcaaaacaca
gi|6 : AATTACTGT--GTGATG--C--G-----TAC--A-GTGTGT--GT--GTTGT-A-GTGCGT-GTGCTTG---------------TCACTCTCGCT-----TT-CAG-C-CT-TACC--ATTGGATA---GCAG-C--TCGCTGCAAAAG---GTA-ACTA---AATATGTAAGTCT-T-C--C------------A--TA--ACCTCTCATGCAGTAAGACCAATGTGGTT-----------T-CCTCCCCGAGGTAACAAAATGGTAACTGG-A----ATC-----ACACGGTTC--CAG-NNNNNNNNNNN------------NNN--NNN------------NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNCCGGCGTGTGGATATGCCCTGATGCCTGCAAGCCTAGT----CCCCAGCTA-TGGGT-AAATAGaatgggcaccctgcggccgtcaaggca
gi|5 : tATGACTGT--T--GTGATC--G--C-TTAC--A-GTGTGT--GT--GTTGTAG-GTGT----TGTGT------------TTG-TCACTCTCGCT-----TT-TAG-C-TC--ACC--ATTG---A---GCAG-TCTTG-CTGCCAA-----GAA---AG---AGCTTA-AGGTCT-T-CTGCCTGCCAA--TT-A--TA--GC-TCTCATGCAGTATGACTAATGTGGTTC----------T-CCCC---GAGGTAACA---TGGTAATTGGTTA---ATC-----GCACGGGCC--AAG-CTAACTCTACG------------GGG--TCTCGGAGGAGACTGGGCCCCCAGATGCATGA-CATGCTAGGCCCA--CCGGCGTGTGGATATGACCCGATGCTTGCAAACCTAGT----CCTCAGCTA-TGGGT-AAATAGccggccagatgagggtcgccccgagggtcgcagccttggttggcaactcaactctaaataaaccggttagatctgactcgtgagccatggaaggcagccaatctataggaagggaacctagaagaagaaaaaaacctggccctcct
gi|1 : gtgTGACTGTCTG--ATG--C--G--C------CA-ATGTATATAT--CTTGT-A-GTGTCT-GTGCTTG---------------TCA------CTCTCGCTTGCAGCA-TT-CATC--ACTGGCTA---ACAG-CT-TG-CTGTGAAA-CG-GAAAGCCG---AGAGCGTAAGTCT-T-T--CTTGCCAG--TT-A--CA--TCCTCTCATACAGTAATACCTATGTGGCCCAGATATGATAT-CCTCCTCGAGGTGACAGA-TGGAAACTGG-GC---ATCTAACGGC-----CC--CAG-GCAGAACCACAAGATCTCGGAGGAGG--TTT------------GGCCCCTAGATGCAAGG-CATGCTAGGCCCA--CCGGTGAGTGGACATGCACTGTTGCCTGCAAACCAAAC----CCCCAGCTA-TGGGT-GATTAAC-----CCCACTG---CCTTGTGGGTGGC-----TGA--GG-AA-A--G-C--CTA-GGAATAT------GGGAGACAACCCAGACAG-AAACCTGGAGAGATGCAATTCGTTAGCATGGTAA-CGCAATCATCTACGT---AAGG-AATA-----CCCAGAGAGAAAACCC---GACCCGCCAGAGTGC-AGGTTTGA-CGTTGGGCTAA---CA-----ACCC-AGCTCTG-TAAAA---------AAGAACTTGTTACAGAAACCccggtcagatgagggtcgcagccttagttggcaactcatctgggagagaaaactctcaataaaccgggtagatctgactcaaaagacatggaaggcagccaatctataggaaggagacctacatgtagaagggaaaaaaaacctggtcctccaggtagggggttgagcatgaggctaattcaataatctcatctcataaaaacaactgccttacaaaaactg
gi|8 : TGT--G--AGG--C--ATACAGTG--TATGTGTG--------TTGT-CTGTGTCT-GTGCTTGC-------A--CTC-TC------GCT-----TT-CAG-C-TC-CACC--CCTTAATACATGTAGCAGTTCGCTGAAAAAAAG-GAA-GCAG---AATGTGAAAGTCT-T-C--CCTGCTAG--GT-A--TA--GCCAATCCAA-AGTTAGACCTATGTGACCCAGATATAAGGT-CCTCCTCGAGGTAGCAGA-TGGAAATTGG-GC---ACCTAACGGC-----CC--CAA-GGAGAACCGCA------------TGG--TCTTGAGAGACTA--GGCCCCTAAATGC-TAAGCATGCATGGCCCA--ATGGTATGTGGATATGCCCTGGTGTCTGCAAACCTAGT----CCCCAGTTA-TGGGT-AAATAGCAACAAACCATTGTTTTTTTGTGTGGAG------TGGTT-GTGGCA--TGA--CAGTAGGCTAagaagcgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctggaacgttagaacaatgacaagtagcaaaagaaatgaaaaactatggtatcgacatactaggtatagtgagagtagatggaaggtatcaggataaaacaaaattcaaagctgagacacggtgaaacatgtaggagatgaagaacatcaagtcagtggagtagcaataatgatgagtgaaagagccaagaaataactgatggattggacaccaattgataatagaataataaaagcaattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|12 : taatggttaGTGTCTA-GTGTG---GTAGTTTAT-G-A-GT-A-GTGCTTTGT------A--CTTTTC------GCT-----TT-CAA-A-TAACACC--ATTGGATA---GCA-----TCTATGTGAAAAGG-AGA-GTCG---AGTGCGTAAGTCTCT-C--CCTGCCAG--T--ACATA--GCCTCTCGATTGG-AAAAGCTATGT--CTCAG---TGG--T-TCCCCGT
gi|9 : ttatTT-CAG-CCTC-CACC--TCTGACTA---GTAG-AAA----TGCG--AACAGGGA-GCTGCCTAGTGTATAAGTAT-C-T--CCTGTCAG--AACA--TA--GCCTCTC-CACA-----AC---TATAGTCC---TATGTAATGTCTCCATGTGACAATACA-TGGTAACTGG-GC---ACTGTGAGGC-----CC--CAG-GCTAAACTACA------------AGG--agtat
gi|7 : tgttgtgtgatgcatctagtgtgtagatatggcttgttatctctcgctG---AGTGCGTAAATCT-TAC--TCTGCCAG--T--A--CAAAGTATCTGCACTACTAAGACTCCT----TCCA---ATG-----CCTCCCCGTGGCAATGCA-TGTCAACTGG-GGTCTAGC-----AC-----CC--CAGGCTAAATTGGAA------------GGGGATATCGGAGCAACAA-GGGCCCAAGAGATGTAG-TATGTAGG-CCCA--CCGGCGTGTGGGCATGCTTTAGCACTC----ATCAA-CTTTGCCCCAGCTATGAGTC-AAATAGC-----ATTACTG---CCTTGTAA-TGGACTTTCTTTTCAGT-----------CAA-AGGCTAT------GGGAGAAAACCCAGACAGAAAACC-GGAGAGATGGCATCCTTTAGCAGAAAAAT-GCAATCATCTA------AGGG-AAGGACAA-CCCAGAGAGAAAACCC---AATCCACCA--GTGCGGAGGTTTGTCATGGCGTGAACAGCC-----CCAT-AC--TGT-AAAAAgcggcaggtagatgggactcatatctaagcc
gi|10 : agtcCTA-TGGGTCAAATAGT-----TACACTG---CC--ATGGG--A------TGACCAG-AG-AGGT-A---AA-ACGCTAT------GGGAGACAACCCAGACAGAAAGTCAAGACAGATGGAGTTTGCCAGCAAAGATACTGCAATCGTCTA------AAGGCAAAGAAAAGCCT-GACAGAAAACACT--AACCT-GGAG-GTAT-TAGG-TGAGCGTAAGGCTAAT--CG-----CCTC-ACCTCGG-AAAAA-G----GAGATGA-----TTACGGAAACCAGAAGCAAGT
gi|4 : TAGT-----TCCACTG---TAT-GTGGATGA------CCATGAG-AG-G--T----CAA-AGGTTAT------GGGAG-ACACCAG-AAAGAAAATCCGGACAGATGGAGTTCGTCAGCAAAGATACTGCAATCGTCTA------AGTG-AGAGAAAACCCT-GACAGAAAACACG--AACCT-GGAG-GTAC-TAGGTTGAGCGAAAGGCTAAT--CC-----ACCTCACCTCGA-AAAAAGA----GAT--GA-----TCACAGAAACCAGAAGCAAGCCAAATTTTAT---------AAGAAGGG--G
gi|5 : CCT-CCAG-GTAG-GGGGTTGAGCATGAGGCTAAT--TCAATAATCTC-ATCTCAT-AAAAACA-----ACTGCC-----TTACAAAAACggggggggcaaggacacggaagttcacatgcgaaggatactccagcaaaccccaagttcaccaggagaattgaaacacggaacgtcccgtaccatgtatgctactggaaaaactgcacagtgcatgaaagaaaaggcggagctatcacttagatatattaggataagtgaatgcagatggacgggtacgggcaaataaacaccaacaccggatagatcatcatttactccggaagatcagacaacaaccatgtaatggagtttgcaattgcaatgacaaaagaaacatcaaagtcgttgtatgatagggcacctatcagtaaccgaataataacagcaatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|19 : gtgatgactgttgtgatcgcttacagtgtgtgtgttgtaggtgttgtgtttgtcactctcgcttttagctcaccattgagcagtcttgctgccaagaaagagcttaaggtcttctgcctgccaattatagctctcatgcagtatgactaatgtggttctccccgaggtaacatggtaattggttaatcgcacgggccaagctaactctacggggtctcggaggagactgggcccccagatgcatgacatgctaggcccaccggcgtgtggatatgacccgatgcttgcaaacctagtcctcagctatgggtaaatagccggtcagatgagggtcgcagccttagttggcaactcatctgggagagaaaactctcaataaaccgggtagatctgactcaaaagacatggaaggcagccaatctataggaaggagacctacatgtagaagggaaaaaaaacctggtTGAGCGTTGGGCCAAT--CC-----CCCT-ACCTCGG-AAAAGCA----TACACGA-----TTGCGGAAACCTTGAACAAGTCAAATtg
gi|4 : GCAAACCCCAAGTTCACCAGGAGAATTGAAACACGGAACGTCCCGTACCATGTATGCTACTGGAAAAACTGCACAG--TGCATGAAAGAAAAGGCGGAGCTATCACTTAGATATATTAGG-ATAAGTGAATGCAGATGGAC-GG-GTACGGGCAAATAAACACCAACACCGGAT-AGATC------ATCATTTACTCCGGAAGA--TCAGACAAC---A-ACCATG-T-AA-TGGAGTTTGCAATTGCAATGACAA--AA-GAAAC--ATCAA-AGTCGTTGTAT-GAT-AGGGCACCTATCAGTAACCGAATAATAACAGC
gi|1 : tagttccactgtatgtggatgaccatgagaggtcaaaggttatgggagacaccagaaagaaaatccggacagatggagttcgtcagcaaagatactgcaatcgtctaagtgagagaaaaccctgacagaaaacacgaacctggaggtactaggttgagcgaaaggctaatccacctcacctcgaaaaaagagatgatcacagaaaccagaagcaagccaaattttataagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccaTGGAACGT-TAGAACAATG-----------------A---CAAGTAGC--AAAAGAAATGA-AAAACTATGGTATCGACATACTAGGTAT-AGTGAGAGTAGATGGA-AGGTATCAGGATAAAACAAAATTCAAAGCTG---AGACACGGTGAAACATGTA----GG-AGATGA-AGAACAT---C-A--A-GTC-AG-TGGAGT----AGCAATAATGATGAGTGAAAGAGCCAAGAAATA---ACT-GAT-GGATTGGACACC-------AATTGA-TAATAGAATAATatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|14 : tgactgtctgatgcgccaatgtatatatcttgtagtgtctgtgcttgtcactctcgcttgcagcattcatcactggctaacagcttgctgtgaaacggaaagccgagagcgtaagtctttcttgccagttacatcctctcatacagtaatacctatgtggcccagatatgatatcctcctcgaggtgacagatggaaactgggcatctaacggccccaggcagaaccacaagatctcggaggaggtttggcccctagatgcaaggcatgctaggcccaccggtgagtggacatgcactgttgcctgcaaaccaaacccccagctatgggtgattaaccccactgccttgtgggtggctgaggaaagcctaggaatatgggagacaacccagacagaaacctggagagatgcaattcgttagcatggtaacgcaatcatctacgtaaggaatacccagagagaaaacccgacccgccagagtgcaggtttgacgttgggctaacaacccagctctgtaaaaaagaacttgttacagaaaccagaagcgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgcGGAGCTT-GAGAACAATGTATGCCACTGGGA-AACAGCTCAAATTGC--CAGAGAAATGA-AGAATTGCCATCTAGACATCCTTGGAATCAGCGAAAGCAGGTGGACAGG-GTCTAGAAAGATCAAAATT-ACATCTGGTAAGACA------ATCATATAaaaagcaattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|13 : ACT------ATCGTTTACTCTGGAAGA--TCAGATGAC---CAA-CA-C-CGAGAAGGAGT----AGCGACCATCATGAATAAAGAAAG--TGCAAAAT-CTTTA-ATGGAG-TGGGGACC-------
gi|15 : gtgactgtagatggatcggatcaggaaatactgtctcaaacggccat------ATCATTTACTCCGGAAGA--TCAGACAACAATC-A-TG-G-T-AA-TGAAGT----TGCAATCGCAATGACAAAAGAAAC--ATCAA-AGTCATTGTAT-CAA-TGGGCACCTATCAGTAACCGAATAATAACAcat
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): CAAATCGAACGTCTCTAGATCGCTAACCTACCTGTAGATGAAACGGAGAGTCGAGTGCGTAAATCTTTCCTTGCCAGTATACAGCCTCTACACTATCAAGACTCCTTCAAACTG
Unaligned ( gi|17 ): CAAGGTCTCGGAGGAATCTTTAGGCCCGGAACTGCATGTGAGTCCAGGCCCACTGCGTGTAGAATTATCCCTGTACCGTGCAAAACCTATAGATCCCAACAAGGGTCAAAT
Unaligned ( gi|18 ): GAAGGGTATCTCGGAGTAGCGAGGACCCCAGGGGTACAGAACACAGGCCCACCAGCGTGTGAACACGCCCTTACTCTC
Unaligned ( gi|20 ): CTAGCCTACTTGTAGGTGCGTTAATCTTGCCCTGCCAGTACAAAGCCTCTACACTGT
Alignments
lowQualScore : 11111 11 11111111 7777777777777777 11111 2222222 111111 2222 2222 22222222222222 33333333333 111 66666666666 1 2222222 22222222 5555555555555555555555 111111 1 22222 1 1 222222222 22222222222 111 222222 111 222222222222222 222222 11 333 2 4444 22 222 22222222222222222222222222222 1 222222222 222 1 2222 1 22222 111 111 1111 111111 333333333333333333 11 11 111 1
lowQualScore : 66 99999 00 66 66 1 555 44444444 777 4 44 4 5555555555555555 11111 8888888 55 1 777777 2222 4 0 1 3 2 666 3 3 3 6 77 0000 3 77777 44 3 3 33333333333333 1 4 0 4 66 55555555555 66 66 1 1 1 444 1 00000000000 2 2 2 5 66 6 5 5 66 7 7 0000000 33333333 2 55 6666666666666666666666 55 222222 3 5 888 0 0 1 3 5 22 77777 0 0 000000000 5 33333333333 5 0 7 1 0 1 5 444 1 1 000000 777 888888888888888 1 88 1 3 22 1 999999 4 333 88 3 3 555 3 0 2 2222 77 000 2 99999999999999999999999999999 3 3 2 4 1 0 3 00 0 0 666666666 9 000 0 2 1 3 8888 0 88 8 1 1 2 00000 0 111 1 888 1 2222 1 2 999999 2 333333333333333333 00 00 4 33 1 6 333 1 8 44 5 8 8 9 111 0 22
lowQualScore : .. ..... .. .. .. . ... ........ ... . .. . ................ ..... ....... .. . ...... .... . . . . . ... . . . . .. .... . ..... .. . . .............. . . . . .. ........... .. .. . . . ... . ........... . . . . .. . . . .. . . ....... ........ . .. ...................... .. ...... . . ... . . . . . .. ..... . . ......... . ........... . . . . . . . ... . . ...... ... ............... . .. . . .. . ...... . ... .. . . ... . . . .... .. ... . ............................. . . . . . . . .. . . ......... . ... . . . . .... . .. . . . . ..... . ... . ... . .... . . ...... . .................. .. .. . .. . . ... . . .. . . . . ... . ..
lowQualScore : 99 11111 11 11 11 9 333 33333333 000 4 66 4 9999999999999999 11111 3333333 44 7 222222 3333 4 1 0 6 3 444 3 3 3 7 99 9999 3 22222 88 3 6 77777777777777 0 4 1 4 11 44444444444 11 11 1 1 4 000 3 99999999999 7 9 1 3 11 0 0 0 99 4 8 9999999 00000000 2 33 0000000000000000000000 22 888888 0 6 888 4 2 0 4 0 22 44444 0 0 111111111 0 88888888888 6 1 1 9 3 0 7 777 4 0 777777 999 333333333333333 4 88 0 8 00 0 000000 0 000 55 0 0 000 0 0 5 5555 55 000 5 00000000000000000000000000000 0 0 5 0 0 0 2 55 8 2 555555555 8 222 0 0 0 0 5555 0 88 0 0 0 2 00000 8 888 0 000 0 1111 9 2 222222 2 555555555555555555 22 77 6 88 4 0 444 0 0 00 4 0 0 0 222 2 00
consensus : NNAAATGACTGT--GATGA-CGC-GTAC--AGTGT--GTG-T-GT--T-----GT-G-GTG-TC-TGTGCT-T--G----TC----TC-GCT-----TTCAGC-T---C-CACCA-CTGGATA------GCAGN-TCG-CTGCGAAAAGGGA-AGCCG---AGTGCGTAA-GTC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCC--T-----TGTGG-GTGG------TCGTCGG-AGA--T--CAA-AGGCTA------TGGGAGANAACCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAG-CAAAGAAA-CGCAATC-GTCTA-AG------GG-AAAGAAAA-CCCA-----------GACAGAAAACCCGAACCTCGAG-GTGC-GAGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG---AAAA--A-A-ACAT-----GATTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AA-CAGCTCAAGTTGC--NAGAGAAATGA-AGAACTACCATCTAGACATNCTAGG-AATCA-GCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---C-A-C---A-G--C-AG-TGGAGTN-GCAATCGCGATGANN-AAAGAAACANCAA-AGTCATTGTAT-GAA-TGGGCACCTATCGGTAACCGAATAATAACAGCAT
Reference ( family-1399 ) : NNAAATGACTGT--GATG--CGC-GTAC--AGTGT--GTG-T-GT--T-----GT-G-GTG-TC-TGTGCT-T--G----TT----TCAGCT-----TTCAGC-T---C-CACCN-CTGGATA------GCAGNNTCG-CTGCGAAAANGGA-AGCNG---AGTGCGTAA-GTC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCTAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--TATGCCCTGATGCC-TGC-AAACC--TAGTCCCCAGCTATGGGT-AAATAGC-----NCCACTGCC--T-----TGTGG-GTGG------TNNTCGG-AGA--T-ACAA-AGGCTA------TGGGAGAAAACCCAGAC---AGAAAATCCGGANAGATGGAATTCGTCAG-CAAAGAAACCGCAATC-GTCTA-AG------GG-AAAGAAAA-CCCA-----------GACAGAAAACCCTAACCTCNAG-GTGC-GAGGTTGAGCGTNGGGCTAATCC-----CCCCACCTCGG---AAAA--A-A-ACAN-----GATTACGGAAACCNCGAGCAAGTCAAATNNTNTTTCTCGTCTAAGANNNGAAGAAGAACAGAC---CAACAAAACCCGAA-AGCAGC----AGATGACGCGA--AAGCCGACGGAGCCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAAACCCCAAGTTCACCAGGAGAATTGAAACACGGAACGTNA-GAACAATGTATGCCACTGGGA-AA-CAGC-CAAGTTGC--GAAAGAAATGA-AGAACTATCGTNTAGACATACTAGG-A--TA-GCGAAAGCAGATGGACAGG-GTCNGGANAAA-----TCAAAATT-A-CANCTGGT-AGACNAT----CATTTACTCCGGA------AGATCAGACGAC---C-A-C---A-G--C-AG-TGGAGTA-GCGACNACGACGANT-AAAGAAACANCAA-AGTCATTGTAT-GAA-TGGGCACCTATCAGTAACCGAATAATAACANNAT
gi|1 : TGACTGTCTGATG--CGC----C--AATGT--ATA-T-ATCTT-----GT-A-GTG-TC-TGTGCT-T--G----TCACTCTC-GCT-----TGCAGCAT---T-CATCA-CTGGCTA------ACAGCTT-G-CTGTGAAACGGAA-AGCCG---AGAGCGTAA-GTC-T-T-T--CTTGCCAG-T-TA-CATCCTCT-CAT-AC-AG-TA-ATACCTATGTGGCCCAGATATGATATCCTCCTCGAGGTGAC-AGATGGA-AACTGGG--CA--T-CTAAC--GGCC--C--CAGGCAGAACCACAAGA---TCTCGGAGGA------GGTTTGGCCCCTAGATGCAAGGCATGCTAGGCCCACCGGTGAGTGGA--CATGCACTGTTGCC-TGC-AAACC--AAACCCCCAGCTATGGGT-GATTAAC-----CCCACTGCC--T-----TGTGG-GTGG------CTG-AGG-AAA--G-CCTA-GGAATA------TGGGAGACAACCCAGAC---AG-AAACCTGGAGAGATGCAATTCGTTAG-CATGGTAA-CGCAATC-ATCT--AC------GT-AAGGAATA-CCCA-----------GAGAGAAAACCCGACCCGCCAGAGTGC--AGGTTTGACGTTGGGCTAA-CA-----ACCCAGCTCTGTAAAAAA--G-A-ACTT-----G-TTACAGAAACCAGAAGC
gi|1 : GGAACGTTA-GAACAATG------------------A---CAAGTAGC--AAAAGAAATGA-AAAACTATGGTATCGACATACTAGGTA--TA-GTGAGAGTAGATGGA-AGGTATCAGGATAAA-----ACAAAATTCA-AAGCTGAG-ACACGGTGAAACATGTA-----GG------AGAT--GAAGAA---C-ATC---A-AGTC-AG-TGGAGTA-GCAATAATGATGAGTGAAAGAGCCAAGAA-A-TAACTG-AT-GGATTGGACACCAATTGATAATAGAATAATAAAAGCgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctggaacgttagaacaatgacaagtagcaaaagaaatgaaaaactatggtatcgacatactaggtatagtgagagtagatggaaggtatcaggataaaacaaaattcaaagctgagacacggtgaaacatgtaggagatgaagaacatcaagtcagtggagtagcaataatgatgagtgaaagagccaagaaataactgatggattggacaccaattgataatagaataataaaagcaattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|10 : tgactgtctgatgcgccaatgtatatatcttgtagtgtctgtgcttgtcactctcgcttgcagcattcatcactggctaacagcttgctgtgaaacggaaagccgagagcgtaagtctttcttgccagttacatcctctcatacagtaatacctatgtggcccagatatgatatcctcctcgaggtgacagatggaaactgggcatctaacggccccaggcagaaccacaagatctcggaggaggtttggcccctagatgcaaggcatgctaggcccaccggtgagtggacatgcactgttgcctgcaaaccaaacccccagctatgggtgattaaccccactgccttgtgggtggctgaggaaagcctaggaatatgggagacaacccagacagaaacctggagagatgcaattcgttagcatggtaacgcaatcatctacgtaaggaatacccagagagaaaacccgacccgccagagtgcaggtttgacgttgggctaacaacccagctctgtaaaaaagaacttgttacagaaaccagaagcgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctCTATGGGTCAAATAGT-----TACACTGCC--A-----TG-GG-ATG---------ACCAG-AGAGGT-A-AA-ACGCTA------TGGGAGACAACCCAGAC---AGAAAGTCAAGACAGATGGAGTTTGCCAG-CAAAGATACTGCAATC-GTCTA-AA------GGCAAAGAAAA-GCCT-----------GACAGAAAACACTAACCTGGAG-GTAT-TAGG-TGAGCGTAAGGCTAATCG-----CCTCACCTCGG---AAAA--AGG-AGAT-----GATTACGGAAACCAGAAGCAAGTattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|11 : AAATGACTGT--GG-A--CGC-TTAC--AGTGT--GTGGT-GT--T-----GT-G-GTG-TCGTGTGCT-T--GCCCCTT----TC-GCT-----TTCAGC-------AACCAGTTGGATAA-----GCAAGCTTG-CTGTGAAGAGCGA-AGCAG---AATGAGTCA-GTC-T-T-CG-TCTTCCAA-C-TAATAGCCT-T-CAT-AC-AG-TA-AGACCTATGTGACCCAGATATGGGATTCCCAACGAGGTGAC-AGACGGTAAAATGGG--CA--C-CCTGC--GGCCGTC--AAGGCA
gi|12 : GT-GTCT--AGTGT--G-G-TAGT--TTATGAGT-A-GTGCTT-TGTACT-T--------T----TC-GCT-----TTCAAA-T---AACACCA-TTGGATA------GCA---TCT-ATGTGAAAAGGAG-AGTCG---AGTGCGTAA-GTC-TCT-C--CCTGCCAGTA-CA-TAGCCTCT-C-G-AT-TG-GA-AAAGCTATGT--CTCAG---TGG----TTCCCCGTAGTA
gi|13 : ttatGTAGATGGATCGG-ATCAGGAAATACTGTCTCAAA------CGGCC----ATACTAT----CGTTTACTCTGGA------AGATCAGATGAC---CAA-C---A-C--CGAGAAGGAGTA-GCGACCATCATGAAT-AAAGAAAGTGCAA-AATCTTTA-ATGGAG-TGGGGACCCATt
gi|14 : gtgactGGAGCTTGA-GAACAATGTATGCCACTGGGA-AA-CAGCTCAAATTGC--CAGAGAAATGA-AGAATTGCCATCTAGACATCCTTGG-AATCA-GCGAAAGCAGGTGGACAGG-GTCTAGAAAGA-----TCAAAATT-A-CATCTGGTAAGACAAT----CATATA
gi|15 : AT----CATTTACTCCGGA------AGATCAGACAACAATC-A-T---G-G--T-AA-TGAAGTT-GCAATCGCAATGACA-AAAGAAACATCAA-AGTCATTGTAT-CAA-TGGGCACCTATCAGTAACCGAATAATAACA
gi|16 : tcAAACGGAGAGTCG---AGTGCGTAA-ATCTT-T-C--CTTGCCAGTA-TA-CAGCCTCT--AC-ACTAT-CA-AGACg
gi|17 : caaatcgaacgtctctagatcgctaacctacctgtagatgCAAGG---TCTCGGAGGAATCTTTA----GGCCCGGAACTGCATGTGAGTCCAGGCCCACT-GCGTGTAGAATTAT-CCCTG-TACCGTGCAAAACCTATAGATCCCAAC-AAGGGTCAAATtccttcaaactg
gi|18 : AAGGGTATCTCGGAGTAGCG---A----GGACCCCAGGGGTACAGAACAC-AGGCCCACCAGCGTGTGAA--CACGCCCT
gi|19 : gTGAGCGTTGGGCCAATCC-----CCCTACCTCGG---AAAAGCA-T-ACAC-----GATTGCGGAAACCTTGAACAAGTCAAATtactctc
gi|2 : AAATGACTGT--G-TGA-CAC-GTAC--AGTGT--GTG-T-GTGTT-----GT-G-GTG-TC-TGTGCT-T--GACACTT----TC-GTT-----TTCAGC-TAGCCACACCG-CTGGATA------GCAGCTT-G-CTGTGAAA-TGGA-AGCAG---AATGAGTCG-GTC-T-T-C--CCTTCCAA-C-TA-TAGCCTCT-CAT-A---G-TA-AGACCTATGTGACCCAGATATGGGATCCTCCACAAGG-GGC-AGACGGT-AACTGGG--CA--C-CCTGC--GGCC--CGGCCGGCAGAATCACAAGG---TCTAGGAGGA------ATCTAGGCCCCTAGATGCATGGTAAACCAGGCCAACAGGCGTGTAGA--TATGCCCTGATACC-TGC-AAACC--TAGATCGCAACTATGGATCAAATAGT-----TCCACTGCC--T-----TGTGG-ATGG------TTTTTGG-ATA--G-TCAA-AGGCTACTTATATGGAAGTAAATCCAGAC---AGAAAATCCGGGTAGATAGAACTCGTCAG-CAAAA-----GCTATC-GTCTA-ACCACTACAG-AAAAAAAA-GCTG-----------GCC------CTCTAAACTCAAG-GGGC-A-----GAACGTAGGGTTAATCA-----CCCAACCTCGGTA-AAAA--A-A-AAATCCTGAGATTACAGAAACATCGCTAAAG-CAAACAATCTTTCTCGTCTAAGACTTGAAAAAGAACAGAC---CAACAAAACCCGAA-AGCAGC----AGATGACGCGA--AAGCCGACGGAGCCAAA
gi|2 : ACAAT----TATTTACTCTGGAAATAGCAGCCCAGATGAT---C-A-CATGA-G--A-AG--GGAGTT-GCtataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacacaattatttactctggaaatagcagcccagatgatcacatgagaagggagttgcatttctaatgaaaataaaatctaaaaagtctttactgcaatggaatcccattttacctagaattattacagcaagattcaactctagttttcaaaacaca
gi|20 : aaatgactgtgtgacacgtacagtgtgtgtgtgttgtggtgtctgtgcttgacactttcgttttcagctagccacaccgctggatagcagcttgctgtgaaatggaagcagaatgagtcggtcttcccttccaactatagcctctcatagtaagacctatgtgacccagatatgggatcctccacaaggggcagacggtaactgggcaccctgcggcccggccggcagaatcacaaggtctaggaggaatctaggcccctagatgcatggtaaaccaggccaacaggcgtgtagatatgccctgatacctgcaaacctagatcgcaactatggatcaaatagttccactgccttgtggatggtttttggatagtcaaaggctacttatatggaagtaaatccagacagaaaatccgggtagatagaactcgtcagcaaaagctatcgtctaaccactacagaaaaaaaagctggccctctaaactcaaggggcagaacgtagggttaatcacccaacctcggtaaaaaaaaaatcctgagattacagaaacatcgctaaagcaaacaatctttctcgtctaagacttgaaaaagaacagaccaacaaaacccgaaagcagcagatgacgcgaaagccgacggagccaaatataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacGTGCGTTA-ATC-T-TGC--CCTGCCAGTA-CA-AAGCCTCT--AC-AC-TG-Tatttctaatgaaaataaaatctaaaaagtctttactgcaatggaatcccattttacctagaattattacagcaagattcaactctagttttcaaaacaca
gi|3 : ctagcctacttgtagAAATGACTGT--GATG--CGCAGTACTTAGTGT--G-G-T-TT--T-----GT-G-GTG-TC-AATGCT-TAAA----TTGA--TCAGCTCAAAGTTCAGA-T---C-CACCT-CTGGCTA------GCAGAGATGTCTGCGAAAACAGA-AGCAG---AGTGTGTAG-GTC-T-T-C--CCTACCAG-G--A-TAGCCTCT-CAA-AC-AG-TA-AGACCTGTGTGGCCCAGATATGGGATCCCCCATGAGGTGAC-AGATGGT-AACTGGG--GA--T-C-------GCT--C--CAGTTAAAACCACAGGG---TTT------------------GGCCCCCAGATGCGTGATATACAAGACCCACCGGTGAGTGGA--CATGCCCTGGTGCC-CGC-AAACC--AAACCCCCAGCTAGAGGT-AAATAGT-----ACCACTGCC--T-----TGTGG-GTAG------TAATCGGTAGA--T-ACAA-AGGCTA------CGGGAGCAAACCCA-AC---AGAAAACCCGGACAGATGGAGTTCGTAAG-CAGCGTAATCGCAATC-GTCTA-AG------GG-AATGAAAACCCCA-----------AACAGAAG--CACAACCCCGAG-GTAC-AAGGTTGATCGTAGGGCCAATCC-----CCCTACCTCGG---AAAA--ACACACAA-----GATTACGGAAACCTTGATCAAGTCAAATAGTAT------TCAAAGAGTGG--GAAGACCAGCCATTCAACGCGACCCAAATAGAGGCGTAAAGATGACGTGGACAAGTCAA---ACCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCCAACCCCAAAGTTACAAGAAAGATTGGTACATGGAACGTGA-GAACAATGTATGTCACCGGGATAA-CAGCTCAAATTGC--CAGAGAAATGA-AGAATTACCATCTAGACATCCTAGG-AATCA-ACGAAAGCAGGCGGACAGG-GCCTGGAAAGA-----TCAAAATT-A-CATCTGGTGAGACAAT----CATATACTCTGGC------AGAACAGATGAC---C-A-C---A-G--C-AG-TGGCGTA-GCTATAATGATGAGC-AACGAAGCAGCAATAG-CACTAGAT-GAA-TGGGCACC-------AAACGATTAGTAGCATCAT
gi|4 : tcTAGT-----TCCACTGTA--T------GTGG-ATGA------CCATGAG-AGG--T--CAA-AGGTTA------TGGGAGACA--CCAGAA---AGAAAATCCGGACAGATGGAGTTCGTCAG-CAAAGATACTGCAATC-GTCTA-AG------TG-AGAGAAAA-CCCT-----------GACAGAAAACACGAACCTGGAG-GTAC-TAGGTTGAGCGAAAGGCTAATCCA----CCTCACCTCGA---AAAA--A-G-AGAT-----GATCACAGAAACCAGAAGCAAGCCAAATTTTAT
gi|4 : GCAAACCCCAAGTTCACCAGGAGAATTGAAACACGGAACGTCCCGTACCATGTATGCTACTGGAA-AAACTGC-ACAGT-GCATGAAAGAAAAGGCGGAGCTATCACTTAGATATATTAGG-A--TAAGTGAATGCAGATGGAC-GG-GTACGGGCAAA-----TAAACACC-AACACCGGAT-AGATCAT----CATTTACTCCGGA------AGATCAGACAAC---A-A-CC--ATG--T-AA-TGGAGTTTGCAATTGCAATGACA-AAAGAAACATCAA-AGTCGTTGTAT-GAT-AGGGCACCTATCAGTAACCGAATAATAACAGCaagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccagcaaaccccaagttcaccaggagaattgaaacacggaacgtcccgtaccatgtatgctactggaaaaactgcacagtgcatgaaagaaaaggcggagctatcacttagatatattaggataagtgaatgcagatggacgggtacgggcaaataaacaccaacaccggatagatcatcatttactccggaagatcagacaacaaccatgtaatggagtttgcaattgcaatgacaaaagaaacatcaaagtcgttgtatgatagggcacctatcagtaaccgaataataacagcaatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|5 : tagttccactgtatgtggatgaccatgagaggtcaaaggttatgggagacaccagaaagaaaatccggacagatggagttcgtcagcaaagatactgcaatcgtctaagtgagagaaaaccctgacagaaaacacgaacctggaggtactaggttgagcgaaaggctaatccacctcacctcgaaaaaagagatgatcacagaaaccagaagcaagccaaattttataagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccaATGACTGT--TGTGATCGC-TTAC--AGTGT--GTG-T-GT--T-----GTAG-GTG-T--TGTGTT-T--GTCACTC----TC-GCT-----TTTAGC-T-----CACCA-TTG---A------GCAGTCTTG-CTGCCAAGAAAGA------------GCTTAAGGTC-T-T-CTGCCTGCCAA-T-TA-TAG-CTCT-CAT-GC-AG-TA-TGACTAATGTGG-------------TTCTCCCCGAGGTAAC---ATGGT-AATTGGT--TAATCGC--AC--GGGC--C--AAGCTAACTCTACGGGG---TCTCGGAGGAGACT--G----GGCCCCCAGATGCATGACATGCTAGGCCCACCGGCGTGTGGA--TATGACCCGATGCT-TGC-AAACC--TAGTCCTCAGCTATGGGT-AAATAGC---------CGGTCAGA-----TGAGG-GTCGCAGCCTTAGTTGG-CAA--C-TCA----TCTG------GGAGAGAAAACTC--TC---AATAAA-CCGGGTAGATCTGACTCAAAAGACATGGAAG--GCAGCCAATCTATAG------G---AAGGAGA-CCTACATGTAGAAGGGAAAAAAAACCTGGTCCTCCAG-GTAG-GGGGTTGAGCATGAGGCTAATTCAATAATCTCATCTCAT---AAAA--ACA-ACTG-----CCTTACAAAAACatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|6 : gtgAATTACTGT--G-TGA-TGC-GTAC--AGTGT--GTG-T-GT--T-----GT-A-GTG-CG-TGTGCT-T--G----TCACTCTC-GCT-----TTCAGC-C---T-TACCA-TTGGATA------GCAGC-TCG-CTGC--AAAAGGT-AACTA---AATATGTAA-GTC-T-T-C--C-----------A-TAACCTCT-CAT-GC-AG-TA-AGACCAATGTGGTT-----------TCCTCCCCGAGGTAACAAAATGGT-AACTGGAATCA----C--AC--GGTT--C--CAG------NNNNNNNN---NNNNNNNNNN------N----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCGTGTGGA--TATGCCCTGATGCC-TGC-AAGCC--TAGTCCCCAGCTATGGGT-AAATAGC---------CGGCCAGA-----TGAGG-GTCG-------CCCCGA-GGG--T--CGC-AGCCT-------TGGTTGGCAACTCA-ACTCTAAATAAACCGGTTAGATCTGACTCGTGAG-CCATGGAA-GGCAGCCAATCTATAG------G---AAGGGAA-CCTA-----------GA-AGAAGAtg
gi|7 : t-AGTCG---AGTGCGTAA-ATC-T-TAC--TCTGCCAG-TACA-AAGTATCTGCACTAC----TA-AGACTCCT----TCCA---ATG----CCTCCCCGTGGCAAT-GCATGTC-AACTGGG--GT--C-TA-GC--A-CC--C--CAGGCTAAATTGGAAGGGGATATCGGAGCA------ACAA-GGGCCCAAGAGATGTAGTATG-TAGGCCCACCGGCGTGTGGG--CATGCTTTAGCACT-CAT-CAACT--TTG-CCCCAGCTATGAGTCAAATAGC-----ATTACTGCC--T-----TGTAA--TGGACTTTCTTTTCAG------T--CAA-AGGCTA------TGGGAGAAAACCCAGAC---AGAAAA-CCGGAGAGATGGCATCCTTTAG-CAGAAAAA-TGCAATC-ATCTA-AG------GG-AAGGACAA-CCCA-----------GAGAGAAAACCCAATCCACCA--GTGCGGAGGTTaaaaaacctggccctcct
gi|8 : TGT--GA-G---GC-ATAC--AGTGTATGTG-T-GT--T-----GT-CTGTG-TC-TGTGCT-T--GCAC-TC----TC-GCT-----TTCAGC-T---C-CACCC-CTTAATACATGTAGCAGT-TCG-CTGAAAAAAAGGA-AGCAG---AATGTGAAA-GTC-T-T-C--CCTGCTAG-G-TA-TAGCCAAT-CCA-A--AG-TT-AGACCTATGTGACCCAGATATAAGGTCCTCCTCGAGGTAGC-AGATGGA-AATTGGG--CA--C-CTAAC--GGCC--C--CAAGGAGAACCGCATGG---TCTTGAGAGACT----A----GGCCCCTAAATGCTAAGCATGCATGGCCCAATGGTATGTGGA--TATGCCCTGGTGTC-TGC-AAACC--TAGTCCCCAGTTATGGGT-AAATAGCAACAAACCATTGTT--TTTTTGTGTGGAGTGG------TTGT--G-GCA--TGACAGTAGGCTA------tgtcatggcgtgaacagccccatactgtaaaaa
gi|9 : taatggttaTGT--GATG--CAT-CTA----GTGT--GTA---GA--T-----AT-G-G----C-T-TGTTAT--C----TC----TC-GCT-----TTCAGCCT---C-CACCT-CTGACTA------GTAGAA----ATGCGAACAGGGA--GCTGCCTAGTGTATAA-GTA-T-C-T--CCTGTCAG-AACA-TAGCCTCT-C-C-AC-AACTATAGTCCTATGTA--------ATG----TCTCCATGTGACAAT-ACATGGT-AACTGGG--CA--C-T--GTGAGGCC--C--CAGGCTAAACTACAAGG---
Alignments
lowQualScore : 2 11111111 5555555555555 11111 2222222 111111 2222 22222222222222 33333333333 111 66666666666 1 2222222 111111 4444444444444444444444444444444 111111 1111 111111 1 222222 11 22222222222 111111 111 222222 111 22222222222222 222222 11 222 1 2222 11 222 1 1111 1 111 1 22222 111 111 1111 111111 333333333333333333 11 1 111 11
lowQualScore : 9 4 4 1 66 66 1 555 44444444 777 4 44 4 8888888888888 4 11111 8888888 55 1 777777 66 4 77 2 3 55 2 3 3 3 6 77 0000 3 77777 44 3 3 33333333333333 1 4 0 4 66 55555555555 66 66 1 1 1 444 1 00000000000 2 2 2 5 66 5 5 66 5 7 0000000 222222 777 9999999999999999999999999999999 55 222222 1 0000 8 888 7 2 1 2 888888 0 444444 00 5 33333333333 5 444444 5 4 1 3 3 5 444 1 0 000000 777 55555555555555 77 88 1 3 1 999999 1 1 1 88 1 1 111 2 5 2 4444 88 000 1 1 1 1 1 1 0 3 00 4 0 4444 2 3 0 444 0 0 1 3 8 88 8 1 1 1 00000 0 111 1 888 6 2222 1 2 999999 2 333333333333333333 00 77 8888 888 1 1 6 1 2 3 777 6 8 666 11
lowQualScore : . . . . .. .. . ... ........ ... . .. . ............. . ..... ....... .. . ...... .. . .. . . .. . . . . . .. .... . ..... .. . . .............. . . . . .. ........... .. .. . . . ... . ........... . . . . .. . . .. . . ....... ...... ... ............................... .. ...... . .... . ... . . . . ...... . ...... .. . ........... . ...... . . . . . . ... . . ...... ... .............. .. .. . . . ...... . . . .. . . ... . . . .... .. ... . . . . . . . . .. . . .... . . . ... . . . . . .. . . . . ..... . ... . ... . .... . . ...... . .................. .. .. .... ... . . . . . . ... . . ... ..
lowQualScore : 6 4 4 8 11 11 9 333 33333333 000 4 66 4 0000000000000 4 11111 3333333 66 7 222222 11 4 00 7 1 00 8 3 3 3 7 99 9999 3 22222 88 3 6 77777777777777 0 4 1 4 11 44444444444 11 11 1 1 4 000 3 99999999999 1 9 1 3 11 0 0 99 9 8 9999999 999999 222 0000000000000000000000000000000 22 888888 0 6666 8 888 1 2 0 4 222222 0 444444 66 0 88888888888 6 444444 0 5 4 5 0 7 777 4 6 777777 999 77777777777777 11 88 0 8 0 000000 0 0 0 55 0 0 555 5 5 5 0000 00 000 0 0 0 0 0 0 0 2 55 2 2 0000 5 5 5 888 0 2 0 2 8 88 0 0 0 4 00000 8 888 0 000 3 1111 9 2 222222 2 555555555555555555 22 77 7777 777 8 0 7 0 2 8 555 7 5 000 00
consensus : NNAAATGACTGTG-TGA-CGC-GTAC--AGTGT--GTG-T-GT--T-----GT-G-GTG-TC-TGTGCT-T--G----TC----TC-GCT-----TTCAGC-T---C-CACCA-CTGGATA------GC--A-G-CTCGCTGCGAAAAGGGAA--GCCGAGTGCGTAA-GTC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TC---------G--TCG-G-A-GG-T-CAA-AGGC------TATGGGAGANAA----CCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANG-AAAC-GCAATC-GTCTA------AGGG-AAAGAAAA-CCCA-----------GACAG------AAA-ACCCGANCCTCGAG-GTGC-GAGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG---AAAA--A-NACAC-----G-ATTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AA-CAGCTCAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---C-A-C---A-G--C-AG-TGGAGTN-GCAATCGCGATGA-NNAAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
Reference ( family-1399 ) : NNAAATGACTGTGATGA-CGC-GTAC--AGTGT--GTG-T-GT--T-----GT-G-GTG-TC-TGTGCT-T--G----TC----TC-GCT-----TTCAGC-T---C-CACCA-CTGGATA------GC--A-G-NTCGCTGCGAAAAGGGAA--GCCGAGTGCGTAA-GTC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TC---------G--TCG-G-A-GA-T-CAA-AGGC------TATGGGAGANAA----CCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAAAG-AAAC-GCAATC-GTCTA------AGGG-AAAGAAAA-CCCA-----------GACAG------AAA-ACCCGAACCTCGAG-GTGC-GAGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG---AAAA--A-AACAT-----G-ATTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AA-CAGCTCAAGTTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---C-A-C---A-G--C-AG-TGGAGTN-GCAATCGCGATGA-NNAAAGAAACANCAA-AGTCATTGTAT-G-AA-TGGGCACCTATCGGTAACC--GAATAATAACAGCAT
gi|1 : TGACTGTC-TGA-TGC-GC-C--AATGT--ATA-T-ATCTT-----GT-A-GTG-TC-TGTGCT-T--G----TCACTCTC-GCT-----TGCAGCAT---T-CATCA-CTGGCTA------AC--A-G-CTTGCTGTGAAACGGAAA--GCCGAGAGCGTAA-GTC-T-T-T--CTTGCCAG-T-TA-CATCCTCT-CAT-AC-AG-TA-ATACCTATGTGGCCCAGATATGATATCCTCCTCGAGGTGAC-AGATGGA-AACTGGG--CA--T-CTAAC--GGCC--C--CAGGCAGAACCACAAGA---TCTCGGAGGA------GGTTTGGCCCCTAGATGCAAGGCATGCTAGGCCCACCGGTGAGTGGA--CATGCACTGTTGCC-TGC-AAACC--AAACCCCCAGCTATGGGT-GATTAAC-----CCCACTGCCT-----TGTGG-GTGG----CT---------G--AGG-A-A-AG-C-CTA-GGAA------TATGGGAGACAA----CCCAGAC---AG-AAACCTGGAGAGATGCAATTCGTTAGCATGG-TAAC-GCAATC-ATCT-------ACGT-AAGGAATA-CCCA-----------GAGAG------AAA-ACCCGACCCGCCAGAGTGC--AGGTTTGACGTTGGGCTAA-CA-----ACCCAGCTCTGTAAAAAA--G-AACTT-----G--TTACAGAAACCAGAAGC
gi|1 : GGAACGTTA-GAACAATG------------------A---CAAGTAGCA--AAAGAAATGA-AAAACTATGGTATCGACATACTAGGTAT-AGTGAGAGTAGATGGA-AGGTATCAGGATAAA-----ACAAAATTCA-AAGCTGAG-ACACGGTGAAACATGTA-----GG------AGAT--GAAGAA---C-ATC---A-AGTC-AG-TGGAGTA-GCAATAATGATGAGTGAAAGAGCCAAGAA-A-TAACTG-AT-G-GATTGGACACCAATTGATAATA--GAATAATAAAAGCAgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctggaacgttagaacaatgacaagtagcaaaagaaatgaaaaactatggtatcgacatactaggtatagtgagagtagatggaaggtatcaggataaaacaaaattcaaagctgagacacggtgaaacatgtaggagatgaagaacatcaagtcagtggagtagcaataatgatgagtgaaagagccaagaaataactgatggattggacaccaattgataatagaataataaaagcaattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|10 : tgactgtctgatgcgccaatgtatatatcttgtagtgtctgtgcttgtcactctcgcttgcagcattcatcactggctaacagcttgctgtgaaacggaaagccgagagcgtaagtctttcttgccagttacatcctctcatacagtaatacctatgtggcccagatatgatatcctcctcgaggtgacagatggaaactgggcatctaacggccccaggcagaaccacaagatctcggaggaggtttggcccctagatgcaaggcatgctaggcccaccggtgagtggacatgcactgttgcctgcaaaccaaacccccagctatgggtgattaaccccactgccttgtgggtggctgaggaaagcctaggaatatgggagacaacccagacagaaacctggagagatgcaattcgttagcatggtaacgcaatcatctacgtaaggaatacccagagagaaaacccgacccgccagagtgcaggtttgacgttgggctaacaacccagctctgtaaaaaagaacttgttacagaaaccagaagcgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctCTATGGGTCAAATAGT-----TACACTGCCA-----TG-GG-ATGA----CC---------A----GAG-A-GG-T-AAA-ACGC------TATGGGAGACAA----CCCAGAC---AGAAAGTCAAGACAGATGGAGTTTGCCAGCAAAG-ATACTGCAATC-GTCTA------AAGGCAAAGAAAA-GCCT-----------GACAG------AAA-ACACTAACCTGGAG-GTAT-TAGG-TGAGCGTAAGGCTAATCG-----CCTCACCTCGG---AAAA--AGGAGAT-----G-ATTACGGAAACCAGAAGCAAGTattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|11 : AAATGACTGTG--GA-CGC-TTAC--AGTGT--GTGGT-GT--T-----GT-G-GTG-TCGTGTGCT-T--G----CCCCTTTC-GCT-----TTCAGC-------AACCAGTTGGATAA-----GC--AAG-CTTGCTGTGAAGAGCGAA--GCAGAATGAGTCA-GTC-T-T-CG-TCTTCCAA-C-TAATAGCCT-T-CAT-AC-AG-TA-AGACCTATGTGACCCAGATATGGGATTCCCAACGAGGTGAC-AGACGGTAAAATGGG--CA--C-CCTGC--GGCCGTC--AAGGCA
gi|12 : A-TGT-GTCT--AGTGT--G-G-TAGT--TTATGAGT-A-GTGCTT-TGTACT-T--------T----TC-GCT-----TTCAAA-T---AACACCA-TTGGATA------GC--A----TCTATGTGAAAAGGAGA--GTCGAGTGCGTAA-GTC-TCT-C--CCTGCCAGTA-CA-TAGCCTCT-C-G-AT-TG-GA-AAAGCTATGT--CTCAG---TGG----TTCCCCGTAGTA
gi|13 : ttGTAGATGGATCGG-ATCAGGAAATACTGTCTCAAA------CGGCC----ATACTAT----CGTTTACTCTGGA------AGATCAGATGAC---CAA-C---A-C--CGAGAAGGAGTA-GCGACCATCATGA-ATAAAGAAAGTGCAA-AATCTTTA-ATGG-AG-TGGGGACCCATt
gi|14 : gtgactGGAGCTTGA-GAACAATGTATGCCACTGGGA-AA-CAGCTCAAATTGCC--AGAGAAATGA-AGAATTGCCATCTAGACATCCTTGGAATCAGCGAAAGCAGGTGGACAGG-GTCTAGAAAGA-----TCAAAATT-A-CATCTGGTAAGACAAT----CATATA
gi|15 : AT----CATTTACTCCGGA------AGATCAGACAACAATC-A-T---G-G--T-AA-TGAAGTT-GCAATCGCAATGA-CAAAAGAAACATCAA-AGTCATTGTAT-C-AA-TGGGCACCTATCAGTAACC--GAATAATAACAG
gi|16 : tcGAAACGGAGA--GTCGAGTGCGTAA-ATCTT-T-C--CTTGCCAGTA-TA-CAGCCTCT--AC-ACTAT-CA-AGAC
gi|17 : caaatcgaacgtctctagatcgctaacctacctgtagatCAAGG---TCTCGGAGGAATCTTTA----GGCCCGGAACTGCATGTGAGTCCAGGCCCACT-GCGTGTAGAATTAT-CCCT-GTACCGTGCAAAACCTATAGATCCCAAC-AAGGGTCAAATtccttcaaactg
gi|18 : AAGGGTATCTCGGAGTAGCG---A----GGACCCCAGGGGTACAGAACAC-AGGCCCACCAGCGTGTGAA--CACGCCCT
gi|19 : gTGAGCGTTGGGCCAATCC-----CCCTACCTCGG---AAAAGCA-TACAC-----G-ATTGCGGAAACCTTGAACAAGTCAAATtactctc
gi|2 : AAATGACTGTG-TGA-CAC-GTAC--AGTGT--GTG-T-GTGTT-----GT-G-GTG-TC-TGTGCT-T--GACACTT----TC-GTT-----TTCAGC-TAGCCACACCG-CTGGATA------GC--A-G-CTTGCTGTGAAA-TGGAA--GCAGAATGAGTCG-GTC-T-T-C--CCTTCCAA-C-TA-TAGCCTCT-CAT-A---G-TA-AGACCTATGTGACCCAGATATGGGATCCTCCACAAGG-GGC-AGACGGT-AACTGGG--CA--C-CCTGC--GGCC--CGGCCGGCAGAATCACAAGG---TCTAGGAGGA------ATCTAGGCCCCTAGATGCATGGTAAACCAGGCCAACAGGCGTGTAGA--TATGCCCTGATACC-TGC-AAACC--TAGATCGCAACTATGGATCAAATAGT-----TCCACTGCCT-----TGTGG-ATGG----TT---------T--TTG-G-A-TAGT-CAA-AGGCTACTTATATGGAAGTAAA----TCCAGAC---AGAAAATCCGGGTAGATAGAACTCGTCAGCAAAA------GCTATC-GTCTAACCACTACAG-AAAAAAAA-GCTG-----------GCC-------------CTCTAAACTCAAG-GGGC-A-----GAACGTAGGGTTAATCA-----CCCAACCTCGGTA-AAAA--A-AAAATCCTGAG-ATTACAGAAACATCGCTAAAG-CAAACAATCTTTCTCGTCTAAGACTTGAAAAAGAACAGAC---CAACAAAACCCGAA-AGCAGC----AGATGACGCGA--AAGCCGACGGAGCCAAA
gi|2 : ACAAT----TATTTACTCTGGAAATAGCAGCCCAGATGAT---C-A-CATGA-G--A-AG--GGAGTT-GCATTTCTAATGA-AAATAAAATCTAAAA-AGTCTTTAC-T-GCAA-TGGAATCCCATT--TTACCTAGAATTATTACAGCAtataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacacaattatttactctggaaatagcagcccagatgatcacatgagaagggagttgcatttctaatgaaaataaaatctaaaaagtctttactgcaatggaatcccattttacctagaattattacagcaagattcaactctagttttcaaaacaca
gi|20 : aaatgactgtgtgacacgtacagtgtgtgtgtgttgtggtgtctgtgcttgacactttcgttttcagctagccacaccgctggatagcagcttgctgtgaaatggaagcagaatgagtcggtcttcccttccaactatagcctctcatagtaagacctatgtgacccagatatgggatcctccacaaggggcagacggtaactgggcaccctgcggcccggccggcagaatcacaaggtctaggaggaatctaggcccctagatgcatggtaaaccaggccaacaggcgtgtagatatgccctgatacctgcaaacctagatcgcaactatggatcaaatagttccactgccttgtggatggtttttggatagtcaaaggctacttatatggaagtaaatccagacagaaaatccgggtagatagaactcgtcagcaaaagctatcgtctaaccactacagaaaaaaaagctggccctctaaactcaaggggcagaacgtagggttaatcacccaacctcggtaaaaaaaaaatcctgagattacagaaacatcgctaaagcaaacaatctttctcgtctaagacttgaaaaagaacagaccaacaaaacccgaaagcagcagatgacgcgaaagccgacggagccaaatataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacGTGCGTTA-ATC-T-TGC--CCTGCCAGTA-CA-AAGCCTCT--AC-AC-TG-Tagattcaactctagttttcaaaacaca
gi|3 : ctagcctacttgtagAAATGACTGTGATG--CGCAGTACTTAGTGT--G-G-T-TT--T-----GT-G-GTG-TC-AATGCT-TAAA----TTGA--TCAGCTCAAAGTTCAGA-T---C-CACCT-CTGGCTA------GCAGA-G-ATGTCTGCGAAAACAGAA--GCAGAGTGTGTAG-GTC-T-T-C--CCTACCAG-G--A-TAGCCTCT-CAA-AC-AG-TA-AGACCTGTGTGGCCCAGATATGGGATCCCCCATGAGGTGAC-AGATGGT-AACTGGG--GA--T-C-------GCT--C--CAGTTAAAACCACAGGG---TTT------------------GGCCCCCAGATGCGTGATATACAAGACCCACCGGTGAGTGGA--CATGCCCTGGTGCC-CGC-AAACC--AAACCCCCAGCTAGAGGT-AAATAGT-----ACCACTGCCT-----TGTGG-GTAG----TA---------A--TCG-GTA-GA-TACAA-AGGC------TACGGGAGCAAA----CCCA-AC---AGAAAACCCGGACAGATGGAGTTCGTAAGCAGCGTAATC-GCAATC-GTCTA------AGGG-AATGAAAACCCCA-----------AACAG------AAGCAC---AACCCCGAG-GTAC-AAGGTTGATCGTAGGGCCAATCC-----CCCTACCTCGG---AAAA--A-CACACAA---G-ATTACGGAAACCTTGATCAAGTCAAATAGTAT------TCAAAGAGTGG--GAAGACCAGCCATTCAACGCGACCCAAATAGAGGCGTAAAGATGACGTGGACAAGTCAA---ACCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCCAACCCCAAAGTTACAAGAAAGATTGGTACATGGAACGTGA-GAACAATGTATGTCACCGGGATAA-CAGCTCAAATTGCC--AGAGAAATGA-AGAATTACCATCTAGACATCCTAGGAATCAACGAAAGCAGGCGGACAGG-GCCTGGAAAGA-----TCAAAATT-A-CATCTGGTGAGACAAT----CATATACTCTGGC------AGAACAGATGAC---C-A-C---A-G--C-AG-TGGCGTA-GCTATAATGATGA-GCAACGAAGCAGCAATAG-CACTAGAT-G-AA-TGGGCACC-------AAAC--GATTAGTAGCATCAT
gi|4 : tcTAGT-----TCCACTGTAT------GTGG-ATGA----CC---------A--TGA-G-A-GG-T-CAA-AGGT------TATGGGAGACA------CCAGAA---AGAAAATCCGGACAGATGGAGTTCGTCAGCAAAG-ATACTGCAATC-GTCTA------AGTG-AGAGAAAA-CCCT-----------GACAG------AAA-ACACGAACCTGGAG-GTAC-TAGGTTGAGCGAAAGGCTAATCCA----CCTCACCTCGA---AAAA--A-GAGAT-----G-ATCACAGAAACCAGAAGCAAGCCAAATTTTAT
gi|4 : GCAAACCCCAAGTTCACCAGGAGAATTGAAACACGGAACGTCCCGTACCATGTATGCTACTGGAA-AAACTGCACAG--TGCATGAAAGAAAAGGCGGAGCTATCACTTAGATATATTAGGA-TAAGTGAATGCAGATGGAC-GG-GTACGGGCAAA-----TAAACACC-AACACCGGAT-AGATCAT----CATTTACTCCGGA------AGATCAGACAAC---A-A-CC--ATG--T-AA-TGGAGTTTGCAATTGCAATGA-CAAAAGAAACATCAA-AGTCGTTGTAT-G-AT-AGGGCACCTATCAGTAACC--GAATAATAACAGCAaagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccagcaaaccccaagttcaccaggagaattgaaacacggaacgtcccgtaccatgtatgctactggaaaaactgcacagtgcatgaaagaaaaggcggagctatcacttagatatattaggataagtgaatgcagatggacgggtacgggcaaataaacaccaacaccggatagatcatcatttactccggaagatcagacaacaaccatgtaatggagtttgcaattgcaatgacaaaagaaacatcaaagtcgttgtatgatagggcacctatcagtaaccgaataataacagcaatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|5 : tagttccactgtatgtggatgaccatgagaggtcaaaggttatgggagacaccagaaagaaaatccggacagatggagttcgtcagcaaagatactgcaatcgtctaagtgagagaaaaccctgacagaaaacacgaacctggaggtactaggttgagcgaaaggctaatccacctcacctcgaaaaaagagatgatcacagaaaccagaagcaagccaaattttataagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccaATGACTGTTGTGATCGC-TTAC--AGTGT--GTG-T-GT--T-----GTAG-GTG-T--TGTGTT-T--GTCACTC----TC-GCT-----TTTAGC-T-----CACCA-TTG---A------GC--A-GTCTTGCTGCCAA----GAA------AGAGCTTAAGGTC-T-T-CTGCCTGCCAA-T-TA-TAG-CTCT-CAT-GC-AG-TA-TGACTAATGTGG-------------TTCTCCCCGAGGTAAC---ATGGT-AATTGGT--TAATCGC--AC--GGGC--C--AAGCTAACTCTACGGGG---TCTCGGAGGAGACT--G----GGCCCCCAGATGCATGACATGCTAGGCCCACCGGCGTGTGGA--TATGACCCGATGCT-TGC-AAACC--TAGTCCTCAGCTATGGGT-AAATAGC---------CGGTCA-----GATGA-G-GG----TCGCAGCCTTAG--TTG-GCA-AC-T-CA------------TCTGGGAGAGAAAACTCTCA------ATAAA--CCGGGTAGATCTGACTCAAAAGACATG-GAAG-GCAGCCAATCTAT-----AGG---AAGGAGA-CCTACATGTAGAAGGGAAAA------AAA-ACCTGGTCCTCCAG-GTAG-GGGGTTGAGCATGAGGCTAATTCAATAATCTCATCTCAT---AAAA--ACAAC-T-----GCCTTACAAAAACatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|6 : gtgAATTACTGTG-TGA-TGC-GTAC--AGTGT--GTG-T-GT--T-----GT-A-GTG-CG-TGTGCT-T--G----TCACTCTC-GCT-----TTCAGC-C---T-TACCA-TTGGATA------GC--A-G-CTCGCTGC-AAAAGGTAA---CTAAATATGTAA-GTC-T-T-C--C-----------A-TAACCTCT-CAT-GC-AG-TA-AGACCAATGTGGTT-----------TCCTCCCCGAGGTAACAAAATGGT-AACTGGAATCA----C--AC--GGTT--C--CAG------NNNNNNNN---NNNNNNNNNN------N----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCGTGTGGA--TATGCCCTGATGCC-TGC-AAGCC--TAGTCCCCAGCTATGGGT-AAATAGC---------CGGCCA-----GATGA-G-GG----TC---------GCCCCG-A-G-GG-T-CGC-AGCC------T-TGGTTGGCAA----CTCA-ACTCTAAATAAACCGGTTAGATCTGACTCGTGAGCCATG-GAAG-GCAGCCAATCTAT-----AGG---AAGGGAA-CCTA-----------GA-AGAAGAAAAAA-ACCTGGCCCTCtg
gi|7 : tA--GTCGAGTGCGTAA-ATC-T-TAC--TCTGCCAG-TACA-AAGTATCTGCACTAC----TA-AGACTCCT----TCCA---ATG----CCTCCCCGTGGCAAT-GCATGTC-AACTGGG--GT--C-TA-GC--A-CC--C--CAGGCTAAATTGGAAGGGGATATCGGAGCA------ACAA-GGGCCCAAGAGATGTAGTATG-TAGGCCCACCGGCGTGTGGG--CATGCTTTAGCACT-CAT-CAACT--TTG-CCCCAGCTATGAGTCAAATAGC-----ATTACTGCCT-----TGTAA--TGGACTTTC---------T--TTT-C-A-G--T-CAA-AGGC------TATGGGAGAAAA----CCCAGAC---AGAAAA-CCGGAGAGATGGCATCCTTTAGCAGAA-AAAT-GCAATC-ATCTA------AGGG-AAGGACAA-CCCA-----------GAGAG------AAA-ACCCAATCCACCA--GTGCGGAGGTTct
gi|8 : AATGGTTATG-TGA-GGC-ATAC--AGTGTATGTG-T-GT--T-----GT-CTGTG-TC-TGTGCT-T--GCAC-TC----TC-GCT-----TTCAGC-T---C-CACCC-CTTAATACATGTAGC--A-G-TTCGCTGAAAAAAAGGAA--GCAGAATGTGAAA-GTC-T-T-C--CCTGCTAG-G-TA-TAGCCAAT-CCA-A--AG-TT-AGACCTATGTGACCCAGATATAAGGTCCTCCTCGAGGTAGC-AGATGGA-AATTGGG--CA--C-CTAAC--GGCC--C--CAAGGAGAACCGCATGG---TCTTGAGAGACT----A----GGCCCCTAAATGCTAAGCATGCATGGCCCAATGGTATGTGGA--TATGCCCTGGTGTC-TGC-AAACC--TAGTCCCCAGTTATGGGT-AAATAGCAACAAACCATTGTTTTTTTGTGTGGAGTGG----TT---------G--TGG-C-ATGA---CAGTAGGC------TAtgtcatggcgtgaacagccccatactgtaaaaa
gi|9 : tTGTG-TGA-TGC-ATCT--AGTGT--GTA---GA--T-----AT-G-G----C-T-TGTTAT--C----TC----TC-GCT-----TTCAGCCT---C-CACCT-CTGACTA------GT--A-G-A--AATGCGAACAGGGAGCTGCCTAGTGTATAA-GTA-T-C-T--CCTGTCAG-AACA-TAGCCTCT-C-C-AC-AACTATAGTCCTATGTA--------ATG----TCTCCATGTGACAAT-ACATGGT-AACTGGG--CA--C-T--GTGAGGCC--C--CAGGCTAAACTACAAGG---
Alignments
lowQualScore : 11111111 55555555555 11111 22222222 111111 2222 22222222222222 3333333 111 66666666666 1 2222222 111111 333333333333333333 111111 1111 1 11111111 1111111 22222222222222222 111111 222 222222 2222 2222222222 222222 11 222 1 2222 11 222 1 111111111 111 1 22222 111 111 1111 111111 111 333333333333 11 1 111 11
lowQualScore : 5 5 4 4 1 66 66 1 555 44444444 777 4 44 4 88888888888 4 11111 22222222 55 1 777777 4 9999999 0 55 2 3 3 3 6 77 0000 3 77777 44 3 3 33333333333333 1 4 2 4 66 2222222 66 66 66 1 1 1 444 1 00000000000 2 2 2 5 66 5 5 66 5 7 0000000 222222 777 555555555555555555 6666 4 4 222222 4 0000 1 8 888 0 0 2 1 33333333 888 5555555 1 5 55555555555555555 8 444444 5 2 1 4 5 2 000 0 0 000000 2222 77 66 1111111111 88 1 3 1 999999 1 1 1 88 1 1 111 2 5 2 4444 88 000 1 1 1 1 1 1 0 3 00 4 0 999999999 444 0 0 1 3 8 88 8 1 1 1 00000 0 111 1 888 6 2222 1 2 999999 2 111 666666666666 00 77 8888 888 1 1 6 1 1 3 777 6 7 666 11
lowQualScore : . . . . . .. .. . ... ........ ... . .. . ........... . ..... ........ .. . ...... . ....... . .. . . . . . .. .... . ..... .. . . .............. . . . . .. ....... .. .. .. . . . ... . ........... . . . . .. . . .. . . ....... ...... ... .................. .... . . ...... . .... . . ... . . . . ........ ... ....... . . ................. . ...... . . . . . . ... . . ...... .... .. .. .......... .. . . . ...... . . . .. . . ... . . . .... .. ... . . . . . . . . .. . . ......... ... . . . . . .. . . . . ..... . ... . ... . .... . . ...... . ... ............ .. .. .... ... . . . . . . ... . . ... ..
lowQualScore : 0 0 4 4 8 11 11 9 333 33333333 000 4 66 4 00000000000 4 11111 99999999 66 7 222222 4 9999999 7 00 8 3 3 3 7 99 9999 3 22222 88 3 6 77777777777777 0 4 9 4 11 1111111 11 11 11 1 1 4 000 3 99999999999 1 9 1 3 11 0 0 99 9 8 9999999 999999 222 444444444444444444 9999 4 4 888888 4 6666 0 8 888 4 2 2 0 22222222 000 5555555 0 0 99999999999999999 8 444444 0 5 0 3 7 7 111 1 6 777777 1111 99 77 0000000000 88 0 8 0 000000 0 0 0 55 0 0 555 5 5 5 0000 00 000 0 0 0 0 0 0 0 2 55 2 2 555555555 888 0 2 0 2 8 88 0 0 0 4 00000 8 888 0 000 3 1111 9 2 222222 2 777 777777777777 22 77 7777 777 0 0 7 0 0 8 555 7 8 000 00
consensus : NNAAATGACTGT-G-TGA-CGC-GTAC--AGTGT--GTG-T-GT--T-----GT-G-GTG-TC-TGTGCT-TG----TC-CTCTC-GCT-----TTCAGC-T---C-CACCA-CTGGATA------GCA-G-C--TCGCTGCGAAAAGGGAA--GCCGAGTGCGTAAG-TC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TCG--TCG-G----A-G--GT-CAA-AGGC------T-AT----GGGAGANAACCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANG-AAAC-GCAATC-G-TCTA-AGGG-AAAGAAAA-CC----CA-----------GANAG------AAA-ACCCGANCCTCNAG-GTAC--GAGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG----AAAA--A-NACAC---GA--TTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AACAGCT-CAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---CA-C---A-G--C-AGT-GGAGTN-GCAATCGCGATGA-NNAAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
Reference ( family-1399 ) : NNAAATGACTGT-G-TGA-CGC-GTAC--AGTGT--GTG-T-GT--T-----GT-G-GTG-TC-TGTGCT-TG----TC----TC-GCT-----TTCAGC-T---C-CACCA-CTGGATA------GCA-G-C--TCGCTGCGAAAAGGGAA--GCCGAGTGCGTAAG-TC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TCG--TCG-G----A-G--GT-CAA-AGGC------T-AT----GGGAGANAACCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANG-AAAC-GCAATC-G-TCTA-AGGG-AAAGAAAA-CC----CA-----------GACAG------AAA-ACCCGANCCTCGAG-GTGC--GAGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG----AAAA--A-NACAC---GA--TTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AACAGCT-CAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---CA-C---A-G--C-AGT-GGAGTN-GCAATCGCGATGA-NNAAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
gi|1 : TGACTGT-C-TGA-TGC-GC-C--AATGT--ATA-T-ATCTT-----GT-A-GTG-TC-TGTGCT-TG----TCACTCTC-GCT-----TGCAGCAT---T-CATCA-CTGGCTA------ACA-G-C--TTGCTGTGAAACGGAAA--GCCGAGAGCGTAAG-TC-T-T-T--CTTGCCAG-T-TA-CATCCTCT-CAT-AC-AG-TA-ATACCTATGTGGCCCAGATATGATATCCTCCTCGAGGTGAC-AGATGGA-AACTGGG--CA--T-CTAAC--GGCC--C--CAGGCAGAACCACAAGA---TCTCGGAGGA------GGTTTGGCCCCTAGATGCAAGGCATGCTAGGCCCACCGGTGAGTGGA--CATGCACTGTTGCC-TGC-AAACC--AAACCCCCAGCTATGGGT-GATTAAC-----CCCACTGCCT-----TGTGG-GTGG----CTG--AGG-A----A-A--GC-CTA-GGAA------T-AT----GGGAGACAACCCAGAC---AG-AAACCTGGAGAGATGCAATTCGTTAGCATGG-TAAC-GCAATC-A-TCT--ACGT-AAGGAATA-CC----CA-----------GAGAG------AAA-ACCCGACCCGCCAGAGTGC---AGGTTTGACGTTGGGCTAA-CA-----ACCCAGCTCTGTAA-AAAA--G-AACTT---G---TTACAGAAACCAGAAGC
gi|1 : GGAACGTTA-GAACAATG-----------------A----CAAGTAGCA--AAAGAAATGA-AAAACTATGGTATCGACATACTAGGTAT-AGTGAGAGTAGATGGA-AGGTATCAGGATAAA-----ACAAAATTCA-AAGCTGAG-ACACGGTGAAACATGTA-----GG------AGAT--GAAGAA---CATC---A-AGTC-AGT-GGAGTA-GCAATAATGATGAGTGAAAGAGCCAAGAA-A-TAACTG-AT-G-GATTGGACACCAATTGATAATA--GAATAATAAAAGCAgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctggaacgttagaacaatgacaagtagcaaaagaaatgaaaaactatggtatcgacatactaggtatagtgagagtagatggaaggtatcaggataaaacaaaattcaaagctgagacacggtgaaacatgtaggagatgaagaacatcaagtcagtggagtagcaataatgatgagtgaaagagccaagaaataactgatggattggacaccaattgataatagaataataaaagcaattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|10 : tgactgtctgatgcgccaatgtatatatcttgtagtgtctgtgcttgtcactctcgcttgcagcattcatcactggctaacagcttgctgtgaaacggaaagccgagagcgtaagtctttcttgccagttacatcctctcatacagtaatacctatgtggcccagatatgatatcctcctcgaggtgacagatggaaactgggcatctaacggccccaggcagaaccacaagatctcggaggaggtttggcccctagatgcaaggcatgctaggcccaccggtgagtggacatgcactgttgcctgcaaaccaaacccccagctatgggtgattaaccccactgccttgtgggtggctgaggaaagcctaggaatatgggagacaacccagacagaaacctggagagatgcaattcgttagcatggtaacgcaatcatctacgtaaggaatacccagagagaaaacccgacccgccagagtgcaggtttgacgttgggctaacaacccagctctgtaaaaaagaacttgttacagaaaccagaagcgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctCTATGGGTCAAATAGT-----TACACTGCCA-----TG-GG-ATGA----CCA----GAG----A-G--GT-AAA-ACGC------T-AT----GGGAGACAACCCAGAC---AGAAAGTCAAGACAGATGGAGTTTGCCAGCAAAG-ATACTGCAATC-G-TCTA-AAGGCAAAGAAAA-GC----CT-----------GACAG------AAA-ACACTAACCTGGAG-GTAT--TAGG-TGAGCGTAAGGCTAATCG-----CCTCACCTCGG----AAAA--AGGAGAT---GA--TTACGGAAACCAGAAGCAAGTattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|11 : AAATGACTGT-G--GA-CGC-TTAC--AGTGT--GTGGT-GT--T-----GT-G-GTG-TCGTGTGCT-TG----CCCCTTTC-GCT-----TTCAGC-------AACCAGTTGGATAA-----GCAAG-C--TTGCTGTGAAGAGCGAA--GCAGAATGAGTCAG-TC-T-T-CG-TCTTCCAA-C-TAATAGCCT-T-CAT-AC-AG-TA-AGACCTATGTGACCCAGATATGGGATTCCCAACGAGGTGAC-AGACGGTAAAATGGG--CA--C-CCTGC--GGCCGTC--AAGGCA
gi|12 : A-TGT-GTCT--AGTGT--G-G-TAGT--TTATGAGT-A-GTGCTT-TGTACT-T------T----TC-GCT-----TTCAAA-T---AACACCA-TTGGATA------GCA-T-C--TA--TGTGAAAAGGAGA--GTCGAGTGCGTAAG-TC-TCT-C--CCTGCCAGTA-CA-TAGCCTCT-C-G-AT-TG-GA-AAAGCTATGT--CTCAG---TGG----TTCCCCGTAGTA
gi|13 : ttGTAGATGGATCGG-ATCAGGAAATACTGTCTCAAA------CGGCC----ATACTAT----CGTTTACTCTGGA------AGATCAGATGAC---CAAC---A-C--CGAGAAGGAGTA-GCGACCATCATGA-ATAAAGAAAGTGCAA-AATCTTTA-ATGG-AG-TGGGGACCCATt
gi|14 : gtgactGGAGCTTGA-GAACAATGTATGCCACTGGGA-AACAGCT-CAAATTGCC--AGAGAAATGA-AGAATTGCCATCTAGACATCCTTGGAATCAGCGAAAGCAGGTGGACAGG-GTCTAGAAAGA-----TCAAAATT-A-CATCTGGTAAGACAAT----CATATA
gi|15 : AT----CATTTACTCCGGA------AGATCAGACAACAATCA-T---G-G--T-AAT-GAAGTT-GCAATCGCAATGA-CAAAAGAAACATCAA-AGTCATTGTAT-C-AA-TGGGCACCTATCAGTAACC--GAATAATAACAG
gi|16 : tcGAAACGGAGA--GTCGAGTGCGTAAA-TCTT-T-C--CTTGCCAGTA-TA-CAGCCTCT--AC-ACTAT-CA-AGAC
gi|17 : caaatcgaacgtctctagatcgctaacctacctgtagatCAAGG---TCTCGGAGGAATCTTTA----GGCCCGGAACTGCATGTGAGTCCAGGCCCACT-GCGTGTAGAATTAT-CCCT-GTACCGTGCAAAACCTATAGATCCCAAC-AAGGGTCAAATtccttcaaactg
gi|18 : AAGGGTATCTCGGAGTAGCG---A----GGACCCCAGGGGTACAGAACAC-AGGCCCACCAGCGTGTGAA--CACGCCCT
gi|19 : gTGAGCGTTGGGCCAATCC-----CCCTACCTCGG----AAAAGCA-TACAC---GA--TTGCGGAAACCTTGAACAAGTCAAATtactctc
gi|2 : AAATGACTGT-G-TGA-CAC-GTAC--AGTGT--GTG-T-GTGTT-----GT-G-GTG-TC-TGTGCT-TGACACTT----TC-GTT-----TTCAGC-TAGCCACACCG-CTGGATA------GCA-G-C--TTGCTGTGAAA-TGGAA--GCAGAATGAGTCGG-TC-T-T-C--CCTTCCAA-C-TA-TAGCCTCT-CAT-A---G-TA-AGACCTATGTGACCCAGATATGGGATCCTCCACAAGG-GGC-AGACGGT-AACTGGG--CA--C-CCTGC--GGCC--CGGCCGGCAGAATCACAAGG---TCTAGGAGGA------ATCTAGGCCCCTAGATGCATGGTAAACCAGGCCAACAGGCGTGTAGA--TATGCCCTGATACC-TGC-AAACC--TAGATCGCAACTATGGATCAAATAGT-----TCCACTGCCT-----TGTGG-ATGG----TTT--TTG-G----ATA--GT-CAA-AGGCTACTTAT-AT----GGAAGTAAATCCAGAC---AGAAAATCCGGGTAGATAGAACTCGTCAGCAA---AA---GCTATC-G-TCT-------------AA-CCACTACA-----------GAAAA------AAA-AGCTGGCCCTCTAA-ACTCAAGGGGCAGAACGTAGGGTTAATCA-----CCCAACCTCGGTAAAAAAA--A-AATCCTGAGA--TTACAGAAACATCGCTAAAG-CAAACAATCTTTCTCGTCTAAGACTTGAAAAAGAACAGAC---CAACAAAACCCGAA-AGCAGC----AGATGACGCGA--AAGCCGACGGAGCCAAA
gi|2 : ACAAT----TATTTACTCTGGAAATAGCAGCCCAGATGAT---CA-CATGA-G--A-AG--GGAGTT-GCATTTCTAATGA-AAATAAAATCTAAAA-AGTCTTTAC-T-GCAA-TGGAATCCCATT--TTACCTAGAATTATTACAGCAtataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacacaattatttactctggaaatagcagcccagatgatcacatgagaagggagttgcatttctaatgaaaataaaatctaaaaagtctttactgcaatggaatcccattttacctagaattattacagcaagattcaactctagttttcaaaacaca
gi|20 : aaatgactgtgtgacacgtacagtgtgtgtgtgttgtggtgtctgtgcttgacactttcgttttcagctagccacaccgctggatagcagcttgctgtgaaatggaagcagaatgagtcggtcttcccttccaactatagcctctcatagtaagacctatgtgacccagatatgggatcctccacaaggggcagacggtaactgggcaccctgcggcccggccggcagaatcacaaggtctaggaggaatctaggcccctagatgcatggtaaaccaggccaacaggcgtgtagatatgccctgatacctgcaaacctagatcgcaactatggatcaaatagttccactgccttgtggatggtttttggatagtcaaaggctacttatatggaagtaaatccagacagaaaatccgggtagatagaactcgtcagcaaaagctatcgtctaaccactacagaaaaaaaagctggccctctaaactcaaggggcagaacgtagggttaatcacccaacctcggtaaaaaaaaaatcctgagattacagaaacatcgctaaagcaaacaatctttctcgtctaagacttgaaaaagaacagaccaacaaaacccgaaagcagcagatgacgcgaaagccgacggagccaaatataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacGTGCGTTAA-TC-T-TGC--CCTGCCAGTA-CA-AAGCCTCT--AC-AC-TG-Tagattcaactctagttttcaaaacaca
gi|3 : ctagcctacttgtagAAATGACTGT-GATG--CGCAGTACTTAGTGT--G-G-T-TT--T-----GT-G-GTG-TC-AATGCT-TAAA--TTGA--TCAGCTCAAAGTTCAGA-T---C-CACCT-CTGGCTA------GCA-G-AGATGTCTGCGAAAACAGAA--GCAGAGTGTGTAGG-TC-T-T-C--CCTACCAG-G--A-TAGCCTCT-CAA-AC-AG-TA-AGACCTGTGTGGCCCAGATATGGGATCCCCCATGAGGTGAC-AGATGGT-AACTGGG--GA--T-C--GC-----T--C--CAGTTAAAACCACAGGG---TTT------------------GGCCCCCAGATGCGTGATATACAAGACCCACCGGTGAGTGGA--CATGCCCTGGTGCC-CGC-AAACC--AAACCCCCAGCTAGAGGT-AAATAGT-----ACCACTGCCT-----TGTGG-GTAG----TAA--TCG-GT---A-G--ATACAA-AGGC------T-AC----GGGAGCAAACCCA-AC---AGAAAACCCGGACAGATGGAGTTCGTAAGCAGCGTAATC-GCAATC-G-TCTA-AGGG-AATGAAAACCC----CA-----------AACAG------AAGCAC---AACCCCGAG-GTAC--AAGGTTGATCGTAGGGCCAATCC-----CCCTACCTCGG----AAAA--A-CACACAA-GA--TTACGGAAACCTTGATCAAGTCAAATAGTAT------TCAAAGAGTGG--GAAGACCAGCCATTCAACGCGACCCAAATAGAGGCGTAAAGATGACGTGGACAAGTCAA---ACCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCCAACCCCAAAGTTACAAGAAAGATTGGTACATGGAACGTGA-GAACAATGTATGTCACCGGGATAACAGCT-CAAATTGCC--AGAGAAATGA-AGAATTACCATCTAGACATCCTAGGAATCAACGAAAGCAGGCGGACAGG-GCCTGGAAAGA-----TCAAAATT-A-CATCTGGTGAGACAAT----CATATACTCTGGC------AGAACAGATGAC---CA-C---A-G--C-AGT-GGCGTA-GCTATAATGATGA-GCAACGAAGCAGCAATAG-CACTAGAT-G-AA-TGGGCACC-------AAAC--GATTAGTAGCATCAT
gi|4 : tcTAGT-----TCCACTGTAT------GTGG-ATGA----CCA--TGA-G----A-G--GT-CAA-AGGT------T-AT----GGGAGACA--CCAGAA---AGAAAATCCGGACAGATGGAGTTCGTCAGCAAAG-ATACTGCAATC-G-TCTA-AGTG-AGAGAAAA-CC----CT-----------GACAG------AAA-ACACGAACCTGGAG-GTAC--TAGGTTGAGCGAAAGGCTAATCCA----CCTCACCTCGA----AAAA--A-GAGAT---GA--TCACAGAAACCAGAAGCAAGCCAAATTTTAT
gi|4 : GCAAACCCCAAGTTCACCAGGAGAATTGAAACACGGAACGTCCCGTACCATGTATGCTACTGGAA-AA--ACTGCACAGTGCATGAAAGAAAAGGCGGAGCTATCACTTAGATATATTAGGA-TAAGTGAATGCAGATGGAC-GG-GTACGGGCAAA-----TAAACACC-AACACCGGAT-AGATCAT----CATTTACTCCGGA------AGATCAGACAAC---AA-CC--ATG--T-AAT-GGAGTTTGCAATTGCAATGA-CAAAAGAAACATCAA-AGTCGTTGTAT-G-AT-AGGGCACCTATCAGTAACC--GAATAATAACAGCAaagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccagcaaaccccaagttcaccaggagaattgaaacacggaacgtcccgtaccatgtatgctactggaaaaactgcacagtgcatgaaagaaaaggcggagctatcacttagatatattaggataagtgaatgcagatggacgggtacgggcaaataaacaccaacaccggatagatcatcatttactccggaagatcagacaacaaccatgtaatggagtttgcaattgcaatgacaaaagaaacatcaaagtcgttgtatgatagggcacctatcagtaaccgaataataacagcaatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|5 : tagttccactgtatgtggatgaccatgagaggtcaaaggttatgggagacaccagaaagaaaatccggacagatggagttcgtcagcaaagatactgcaatcgtctaagtgagagaaaaccctgacagaaaacacgaacctggaggtactaggttgagcgaaaggctaatccacctcacctcgaaaaaagagatgatcacagaaaccagaagcaagccaaattttataagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccaATGACTGTTG-TGATCGC-TTAC--AGTGT--GTG-T-GT--T-----GTAG-GTG-T--TGTGTT-TG----TCACTCTC-GCT-----TTTAGC-T---C--ACCA-TTG---A------GCA-GTC--TTGCTGCCAAGAAAGA----------GCTTAAGGTC-T-T-CTGCCTGCCAA-T-TA-TAGC-TCT-CAT-GC-AG-TA-TGACTAATGTGG-------------TTCTCCCCGAGGTAAC-A--TGGT-AATTGGT--TAATCGC--AC--GGGC--C--AAGCTAACTCTACGGGG---TCTCGGAGGA------GACTGGGCCCCCAGATGCATGACATGCTAGGCCCACCGGCGTGTGGA--TATGACCCGATGCT-TGC-AAACC--TAGTCCTCAGCTATGGGT-AAATAGC---------CGGTCA-----GATGA-G-GG----TCG---CA-GCCTTA-GTTGG-CAA----C------TCATCTGGGAGAGAAAACTCT--C---AATAAA-CCGGGTAGATCTGACTCAAAAGACATG-GAAG-GCAGCC-AATCTATAGG---AAGGAGA-CC----TACATGTAGAAGGGAAAA------AAA-ACCTGGTCCTCCAG-GTAG--GGGGTTGAGCATGAGGCTAATTCAATAATCTCATCTCAT----AAAA--A-CA-AC---TGCCTTACAAAAACatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|6 : gtgAATTACTGT-G-TGA-TGC-GTAC--AGTGT--GTG-T-GT--T-----GT-A-GTG-CG-TGTGCT-TG----TCACTCTC-GCT-----TTCAGC-C---T-TACCA-TTGGATA------GCA-G-C--TCGCTGC-AAAAGGTAA---CTAAATATGTAAG-TC-T-T-C--C-----------A-TAACCTCT-CAT-GC-AG-TA-AGACCAATGTGGTT-----------TCCTCCCCGAGGTAACAAAATGGT-AACTGGAATCA----C--AC--GGTT--C--CAG------NNNNNNNN---NNNNNNNNNN------N----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCGTGTGGA--TATGCCCTGATGCC-TGC-AAGCC--TAGTCCCCAGCTATGGGT-AAATAGC---------CGGCCA-----GATGA-G-GG----TCGCCCCG-A----G-G--GT-CGC-AGCC------T--T----GGTTGGCAACTCA-ACTCTAAATAAACCGGTTAGATCTGACTCGTGAGCCATG-GAAG-GCAGCCAA-TCTATAGG---AAGGGAA-CC----TA-----------GA-AGAAGAAAAAA-ACCTGGCCCTCtg
gi|7 : tA--GTCGAGTGCGTAAA-TC-T-TAC--TCTGCCAG-TACA-AAGTATCTGCACTAC----TA-AGACTCCT----TCCA---ATG----CCTCCCCGTGGCAAT-GCATGTC-AACTGGG--GT--C-TA-GC--A-CC--C--CAGGCTAAATTGGAAGGGGATATCGGAGCA------ACAA-GGGCCCAAGAGATGTAGTATG-TAGGCCCACCGGCGTGTGGG--CATGCTTTAGCACT-CAT-CAACT--TTG-CCCCAGCTATGAGTCAAATAGC-----ATTACTGCCT-----TGTAA--TGGACTTTCT--TTT-C----A-G---T-CAA-AGGC------T-AT----GGGAGAAAACCCAGAC---AGAAAA-CCGGAGAGATGGCATCCTTTAGCAGAA-AAAT-GCAATC-A-TCTA-AGGG-AAGGACAA-CC----CA-----------GAGAG------AAA-ACCCAATCCACCA--GTGCG-GAGGTTct
gi|8 : AATGGTTAT-G-TGA-GGC-ATAC--AGTGTATGTG-T-GT--T-----GT-CTGTG-TC-TGTGCT-TGCAC-TC----TC-GCT-----TTCAGC-T---C-CACCC-CTTAATACATGTAGCA-G-T--TCGCTGAAAAAAAGGAA--GCAGAATGTGAAAG-TC-T-T-C--CCTGCTAG-G-TA-TAGCCAAT-CCA-A--AG-TT-AGACCTATGTGACCCAGATATAAGGTCCTCCTCGAGGTAGC-AGATGGA-AATTGGG--CA--C-CTAAC--GGCC--C--CAAGGAGAACCGCATGG---TCTTGAGAGACT----A----GGCCCCTAAATGCTAAGCATGCATGGCCCAATGGTATGTGGA--TATGCCCTGGTGTC-TGC-AAACC--TAGTCCCCAGTTATGGGT-AAATAGCAACAAACCATTGTTTTTTTGTGTGGAGTGG----TTG--TGG-C----A-T--GA-CAGTAGGC------T-Atgtcatggcgtgaacagccccatactgtaaaaa
gi|9 : tTGT-G-TGA-TGC-ATCT--AGTGT--GTA---GA--T-----AT-G-G----C-T-TGTTATC----TC----TC-GCT-----TTCAGCCT---C-CACCT-CTGACTA------GTA-G-A----AATGCGAACAGGGAGCTGCCTAGTGTATAAG-TA-T-C-T--CCTGTCAG-AACA-TAGCCTCT-C-C-AC-AACTATAGTCCTATGTA--------ATG----TCTCCATGTGACAAT-ACATGGT-AACTGGG--CA--C-T--GTGAGGCC--C--CAGGCTAAACTACAAGG---
Alignments
lowQualScore : 11 1111111111 33333333333 2222222 111111 2222 22222222222222 3333333 111 66666666666 1 2222222 111111 333333333333333333 111111 1111 111 1 1111111 333333333333333333 111111 11 222222 2222 2222222222 222222 11 222 1 2222 11 222 1 111111111 111 1 22222 111 111 1111 111111 333333333333333333 11 1 111 11
lowQualScore : 5 5 5 55 0 66 66 4 22 555 4 8888888888 4 22222222222 4 777 8888888 55 1 777777 4 9999999 3 55 2 3 3 3 6 77 0000 3 77777 44 3 3 33333333333333 1 4 0 4 66 2222222 66 66 66 1 1 1 444 1 00000000000 2 2 2 5 66 5 5 66 5 7 0000000 222222 777 555555555555555555 6666 4 4 222222 7777 1 0000 8 888 7 2 1 5 1 666 0 5555555 1 000000000000000000 333333 5 2 1 1 5 77 22 0 0 000000 2222 77 66 1111111111 88 1 3 1 999999 1 1 1 88 1 1 111 2 5 2 4444 88 000 1 1 1 1 1 1 0 3 00 4 0 999999999 444 0 0 1 3 8 88 8 1 1 1 00000 0 111 1 888 6 2222 1 2 999999 2 333333333333333333 00 77 8888 888 1 1 6 1 1 3 777 6 7 666 11
lowQualScore : . . . .. . .. .. . .. ... . .......... . ........... . ... ....... .. . ...... . ....... . .. . . . . . .. .... . ..... .. . . .............. . . . . .. ....... .. .. .. . . . ... . ........... . . . . .. . . .. . . ....... ...... ... .................. .... . . ...... .... . .... . ... . . . . . ... . ....... . .................. ...... . . . . . .. .. . . ...... .... .. .. .......... .. . . . ...... . . . .. . . ... . . . .... .. ... . . . . . . . . .. . . ......... ... . . . . . .. . . . . ..... . ... . ... . .... . . ...... . .................. .. .. .... ... . . . . . . ... . . ... ..
lowQualScore : 0 0 0 22 1 99 11 4 22 222 4 3333333333 4 99999999999 4 888 3333333 66 7 222222 4 9999999 1 00 8 3 3 3 7 99 9999 3 22222 88 3 6 77777777777777 0 4 1 4 11 1111111 11 11 11 1 1 4 000 3 99999999999 1 9 1 3 11 0 0 99 9 8 9999999 999999 222 444444444444444444 9999 4 4 888888 0000 0 6666 8 888 1 2 0 9 2 444 0 5555555 0 999999999999999999 555555 0 5 0 0 7 99 33 1 6 777777 1111 99 77 0000000000 88 0 8 0 000000 0 0 0 55 0 0 555 5 5 5 0000 00 000 0 0 0 0 0 0 0 2 55 2 2 555555555 888 0 2 0 2 8 88 0 0 0 4 00000 8 888 0 000 3 1111 9 2 222222 2 555555555555555555 22 77 7777 777 0 0 7 0 0 8 555 7 8 000 00
consensus : NNAAATGACTGT-G-TGA-CGC-GTAC--AGTGT--GTG-TGT--TGT-G-GT-GTC-T-------GTGCTT-G------T-CA-C-TCTC---GCTTTCAGC-T---C-CACCA-CTGGATA------GCA-G-C--TCGCTGCGAAAAGGGAA--GCCGAGTGCGTAA-GTC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TCG--TCG-G----A-G--GT-CAA-AGGC------T-A--TGGGAGANAA----CCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANGAAA-C-GCAATC-GTCTA-AGGG-AAAGAAAACC----C-A-----------GA-----NAGAAA-ACCCGANCCTCNAG-G--TAC-GAGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG----AAAA--A-NACAC---GA--TTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AACAGCT-CAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGAA------GATCAGACGAC---C-A-C-A---G--C-AG-TGGAGTN-GCAATCGCGATGA-NNAAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
Reference ( family-1399 ) : NNAAATGACTGT-G-TGA-CGC-GTAC--AGTGT--GTG-TGT--TGT-G-GT-GTC-T-------GTGCTT-G------T-C--C-TCTC---GCTTTCAGC-T---C-CACCA-CTGGATA------GCA-G-C--TCGCTGCGAAAAGGGAA--GCCGAGTGCGTAA-GTC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TCG--TCG-G----A-G--GT-CAA-AGGC------T-A--TGGGAGANAA----CCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANGAAA-C-GCAATC-GTCTA-AGGG-AAAGAAAACC----C-A-----------GA-----NAGAAA-ACCCGANCCTCNAG-G--TAC-GAGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG----AAAA--A-NACAC---GA--TTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AACAGCT-CAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGAA------GATCAGACGAC---C-A-C-A---G--C-AG-TGGAGTN-GCAATCGCGATGA-NNAAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
gi|1 : TGACTGT-C-TGA-TGC-GC-C--AATGT--ATA-TATCTTGT-A-GT-GTC-T-------GTGCTT-G------T-CA-C-TCTC---GCTTGCAGCAT---T-CATCA-CTGGCTA------ACA-G-C--TTGCTGTGAAACGGAAA--GCCGAGAGCGTAA-GTC-T-T-T--CTTGCCAG-T-TA-CATCCTCT-CAT-AC-AG-TA-ATACCTATGTGGCCCAGATATGATATCCTCCTCGAGGTGAC-AGATGGA-AACTGGG--CA--T-CTAAC--GGCC--C--CAGGCAGAACCACAAGA---TCTCGGAGGA------GGTTTGGCCCCTAGATGCAAGGCATGCTAGGCCCACCGGTGAGTGGA--CATGCACTGTTGCC-TGC-AAACC--AAACCCCCAGCTATGGGT-GATTAAC-----CCCACTGCCT-----TGTGG-GTGG----CTG--AGG-A----A-A--GC-CTA-GGAA------T-A--TGGGAGACAA----CCCAGAC---AG-AAACCTGGAGAGATGCAATTCGTTAGCATGGTAA-C-GCAATC-ATCT--ACGT-AAGGAATACC----C-A-----------GA-----GAGAAA-ACCCGACCCGCCAGAG--TGC--AGGTTTGACGTTGGGCTAA-CA-----ACCCAGCTCTGTAA-AAAA--G-AACTT---G---TTACAGAAACCAGAAGC
gi|1 : GGAACGTTA-GAACAATG-----------------A----CAAGTAGCA--AAAGAAATGA-AAAACTATGGTATCGACATACTAGGTAT-AGTGAGAGTAGATGGA-AGGTATCAGGATAAA-----ACAAAATTCA-AAGCTGAG-ACACGGTGAAACATGTA-----GGA------GAT--GAAGAA---C-ATC-A---AGTC-AG-TGGAGTA-GCAATAATGATGAGTGAAAGAGCCAAGAA-A-TAACTG-AT-G-GATTGGACACCAATTGATAATA--GAATAATAAAAGCAgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctggaacgttagaacaatgacaagtagcaaaagaaatgaaaaactatggtatcgacatactaggtatagtgagagtagatggaaggtatcaggataaaacaaaattcaaagctgagacacggtgaaacatgtaggagatgaagaacatcaagtcagtggagtagcaataatgatgagtgaaagagccaagaaataactgatggattggacaccaattgataatagaataataaaagcaattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|10 : tgactgtctgatgcgccaatgtatatatcttgtagtgtctgtgcttgtcactctcgcttgcagcattcatcactggctaacagcttgctgtgaaacggaaagccgagagcgtaagtctttcttgccagttacatcctctcatacagtaatacctatgtggcccagatatgatatcctcctcgaggtgacagatggaaactgggcatctaacggccccaggcagaaccacaagatctcggaggaggtttggcccctagatgcaaggcatgctaggcccaccggtgagtggacatgcactgttgcctgcaaaccaaacccccagctatgggtgattaaccccactgccttgtgggtggctgaggaaagcctaggaatatgggagacaacccagacagaaacctggagagatgcaattcgttagcatggtaacgcaatcatctacgtaaggaatacccagagagaaaacccgacccgccagagtgcaggtttgacgttgggctaacaacccagctctgtaaaaaagaacttgttacagaaaccagaagcgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctCTATGGGTCAAATAGT-----TACACTGCCA-----TG-GG-ATGA----CCA----GAG----A-G--GT-AAA-ACGC------T-A--TGGGAGACAA----CCCAGAC---AGAAAGTCAAGACAGATGGAGTTTGCCAGCAAAGATA-CTGCAATC-GTCTA-AAGGCAAAGAAAAGC----C-T-----------GA-----CAGAAA-ACACTAACCTGGAG-G--TAT-TAGG-TGAGCGTAAGGCTAATCG-----CCTCACCTCGG----AAAA--AGGAGAT---GA--TTACGGAAACCAGAAGCAAGTattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|11 : AAATGACTGT-G--GA-CGC-TTAC--AGTGT--GTGGTGT--TGT-G-GT-GTCGT-------GTGCTT-G------C-C--CCTTTC---GCTTTCAGC-------AACCAGTTGGATAA-----GCAAG-C--TTGCTGTGAAGAGCGAA--GCAGAATGAGTCA-GTC-T-T-CG-TCTTCCAA-C-TAATAGCCT-T-CAT-AC-AG-TA-AGACCTATGTGACCCAGATATGGGATTCCCAACGAGGTGAC-AGACGGTAAAATGGG--CA--C-CCTGC--GGCCGTC--AAGGCA
gi|12 : TGT--GTC-TAG--TGT-G-GTAGTT-TATGAGTAGTGCTTTG------TAC--T-TTTC---GCTTTCAAA-T---AACACCA-TTGGATA------GCA-T-C--TA--TGTGAAAAGGAGA--GTCGAGTGCGTAA-GTC-TCT-C--CCTGCCAGTA-CA-TAGCCTCT-C-G-AT-TG-GA-AAAGCTATGT--CTCAG---TGG----TTCCCCGTAGTA
gi|13 : ttaGTAGATGGATCGG-ATCAGGAAATACTGTCTCAAA------CGGCC----ATACTAT----CGTTTACTCTGGAA------GATCAGATGAC---CAA-C-A---C--CGAGAAGGAGTA-GCGACCATCATGA-ATAAAGAAAGTGCAA-AATCTTTA-ATGG-AG-TGGGGACCCATt
gi|14 : gtgactGGAGCTTGA-GAACAATGTATGCCACTGGGA-AACAGCT-CAAATTGCC--AGAGAAATGA-AGAATTGCCATCTAGACATCCTTGGAATCAGCGAAAGCAGGTGGACAGG-GTCTAGAAAGA-----TCAAAATT-A-CATCTGGTAAGACAAT----CATATA
gi|15 : AT----CATTTACTCCGGAA------GATCAGACAACAATC-A-T-G---G--T-AA-TGAAGTT-GCAATCGCAATGA-CAAAAGAAACATCAA-AGTCATTGTAT-C-AA-TGGGCACCTATCAGTAACC--GAATAATAACAG
gi|16 : tcGAAACGGAGA--GTCGAGTGCGTAA-ATCTT-T-C--CTTGCCAGTA-TA-CAGCCTCT--AC-ACTAT-CA-AGAC
gi|17 : caaatcgaacgtctctagatcgctaacctacctgtagatCAAGG---TCTCGGAGGAATCTTTA----GGCCCGGAACTGCATGTGAGTCCAGGCCCACT-GCGTGTAGAATTAT-CCCT-GTACCGTGCAAAACCTATAGATCCCAAC-AAGGGTCAAATtccttcaaactg
gi|18 : AAGGGTATCTCGGAGTAGCG---A----GGACCCCAGGGGTACAGAACAC-AGGCCCACCAGCGTGTGAA--CACGCCCT
gi|19 : gTGAGCGTTGGGCCAATCC-----CCCTACCTCGG----AAAAGCA-TACAC---GA--TTGCGGAAACCTTGAACAAGTCAAATtactctc
gi|2 : AAATGACTGT-G-TGA-CAC-GTAC--AGTGT--GTG-TGTGTTGT-G-GT-GTC-T-------GTGCTT-G------A-CA-C-TTTC---GTTTTCAGC-TAGCCACACCG-CTGGATA------GCA-G-C--TTGCTGTGAAA-TGGAA--GCAGAATGAGTCG-GTC-T-T-C--CCTTCCAA-C-TA-TAGCCTCT-CAT-A---G-TA-AGACCTATGTGACCCAGATATGGGATCCTCCACAAGG-GGC-AGACGGT-AACTGGG--CA--C-CCTGC--GGCC--CGGCCGGCAGAATCACAAGG---TCTAGGAGGA------ATCTAGGCCCCTAGATGCATGGTAAACCAGGCCAACAGGCGTGTAGA--TATGCCCTGATACC-TGC-AAACC--TAGATCGCAACTATGGATCAAATAGT-----TCCACTGCCT-----TGTGG-ATGG----TTT--TTG-G----ATA--GT-CAA-AGGCTACTTAT-A--TGGAAGTAAA----TCCAGAC---AGAAAATCCGGGTAGATAGAACTCGTCAGCAA--AA----GCTATC-GTCT-------------AACCACTAC-A-----------GA-----AAAAAA-AGCTGGCCCTCTAA-ACTCAA-GGGGCAGAACGTAGGGTTAATCA-----CCCAACCTCGGTAAAAAAA--A-AATCCTGAGA--TTACAGAAACATCGCTAAAG-CAAACAATCTTTCTCGTCTAAGACTTGAAAAAGAACAGAC---CAACAAAACCCGAA-AGCAGC----AGATGACGCGA--AAGCCGACGGAGCCAAA
gi|2 : ACAAT----TATTTACTCTGGAAATAGCAGCCCAGATGAT---C-A-C-ATGAG--A-AG--GGAGTT-GCATTTCTAATGA-AAATAAAATCTAAAA-AGTCTTTAC-T-GCAA-TGGAATCCCATT--TTACCTAGAATTATTACAGCAtataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacacaattatttactctggaaatagcagcccagatgatcacatgagaagggagttgcatttctaatgaaaataaaatctaaaaagtctttactgcaatggaatcccattttacctagaattattacagcaagattcaactctagttttcaaaacaca
gi|20 : aaatgactgtgtgacacgtacagtgtgtgtgtgttgtggtgtctgtgcttgacactttcgttttcagctagccacaccgctggatagcagcttgctgtgaaatggaagcagaatgagtcggtcttcccttccaactatagcctctcatagtaagacctatgtgacccagatatgggatcctccacaaggggcagacggtaactgggcaccctgcggcccggccggcagaatcacaaggtctaggaggaatctaggcccctagatgcatggtaaaccaggccaacaggcgtgtagatatgccctgatacctgcaaacctagatcgcaactatggatcaaatagttccactgccttgtggatggtttttggatagtcaaaggctacttatatggaagtaaatccagacagaaaatccgggtagatagaactcgtcagcaaaagctatcgtctaaccactacagaaaaaaaagctggccctctaaactcaaggggcagaacgtagggttaatcacccaacctcggtaaaaaaaaaatcctgagattacagaaacatcgctaaagcaaacaatctttctcgtctaagacttgaaaaagaacagaccaacaaaacccgaaagcagcagatgacgcgaaagccgacggagccaaatataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacGTGCGTTA-ATC-T-TGC--CCTGCCAGTA-CA-AAGCCTCT--AC-AC-TG-Tagattcaactctagttttcaaaacaca
gi|3 : ctagcctacttgtagAAATGACTGT-GATG--CGCAGTACTTAGTGT--G-G-TTT--TGT-G-GT-GTC-A-------ATGCTT-AAATTGAT-C--A-GCTCAAAG--TTCAGA-T---C-CACCT-CTGGCTA------GCA-G-AGATGTCTGCGAAAACAGAA--GCAGAGTGTGTAG-GTC-T-T-C--CCTACCAG-G--A-TAGCCTCT-CAA-AC-AG-TA-AGACCTGTGTGGCCCAGATATGGGATCCCCCATGAGGTGAC-AGATGGT-AACTGGG--GA--T-C--GC-----T--C--CAGTTAAAACCACAGGG---TTT------------------GGCCCCCAGATGCGTGATATACAAGACCCACCGGTGAGTGGA--CATGCCCTGGTGCC-CGC-AAACC--AAACCCCCAGCTAGAGGT-AAATAGT-----ACCACTGCCT-----TGTGG-GTAG----TAA--TCG-GT---A-G--ATACAA-AGGC------T-A--CGGGAGCAAA----CCCA-AC---AGAAAACCCGGACAGATGGAGTTCGTAAGCAGCGTAATC-GCAATC-GTCTA-AGGG-AATGAAAACC----CCA-----------AA-----CAGAAGCAC---AACCCCGAG-G--TAC-AAGGTTGATCGTAGGGCCAATCC-----CCCTACCTCGG----AAAA--A-CACACAA-GA--TTACGGAAACCTTGATCAAGTCAAATAGTATT------CAAAGAGTGG--GAAGACCAGCCATTCAACGCGACCCAAATAGAGGCGTAAAGATGACGTGGACAAGTCAA---ACCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCCAACCCCAAAGTTACAAGAAAGATTGGTACATGGAACGTGA-GAACAATGTATGTCACCGGGATAACAGCT-CAAATTGCC--AGAGAAATGA-AGAATTACCATCTAGACATCCTAGGAATCAACGAAAGCAGGCGGACAGG-GCCTGGAAAGA-----TCAAAATT-A-CATCTGGTGAGACAAT----CATATACTCTGGCA------GAACAGATGAC---C-A-C-A---G--C-AG-TGGCGTA-GCTATAATGATGA-GCAACGAAGCAGCAATAG-CACTAGAT-G-AA-TGGGCACC-------AAAC--GATTAGTAGCATCAT
gi|4 : tcTAGT-----TCCACTGTAT------GTGG-ATGA----CCA--TGA-G----A-G--GT-CAA-AGGT------T-A--TGGGAGACA------CCAGAA---AGAAAATCCGGACAGATGGAGTTCGTCAGCAAAGATA-CTGCAATC-GTCTA-AGTG-AGAGAAAACC----C-T-----------GA-----CAGAAA-ACACGAACCTGGAG-G--TAC-TAGGTTGAGCGAAAGGCTAATCCA----CCTCACCTCGA----AAAA--A-GAGAT---GA--TCACAGAAACCAGAAGCAAGCCAAATTTTAT
gi|4 : GCAAACCCCAAGTTCACCAGGAGAATTGAAACACGGAACGTCCCGTACCATGTATGCTACTGGAA-AA--ACTGCACAGTGCATGAAAGAAAAGGCGGAGCTATCACTTAGATATATTAGGA-TAAGTGAATGCAGATGGAC-GG-GTACGGGCAAA-----TAAACACC-AACACCGGAT-AGATCAT----CATTTACTCCGGAA------GATCAGACAAC---A-A-CCAT--G--T-AA-TGGAGTTTGCAATTGCAATGA-CAAAAGAAACATCAA-AGTCGTTGTAT-G-AT-AGGGCACCTATCAGTAACC--GAATAATAACAGCAaagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccagcaaaccccaagttcaccaggagaattgaaacacggaacgtcccgtaccatgtatgctactggaaaaactgcacagtgcatgaaagaaaaggcggagctatcacttagatatattaggataagtgaatgcagatggacgggtacgggcaaataaacaccaacaccggatagatcatcatttactccggaagatcagacaacaaccatgtaatggagtttgcaattgcaatgacaaaagaaacatcaaagtcgttgtatgatagggcacctatcagtaaccgaataataacagcaatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|5 : tagttccactgtatgtggatgaccatgagaggtcaaaggttatgggagacaccagaaagaaaatccggacagatggagttcgtcagcaaagatactgcaatcgtctaagtgagagaaaaccctgacagaaaacacgaacctggaggtactaggttgagcgaaaggctaatccacctcacctcgaaaaaagagatgatcacagaaaccagaagcaagccaaattttataagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccaATGACTGTTG-TGATCGC-TTAC--AGTGT--GTG-TGT--TGTAG-GT-GT--T-------GTGTTT-G------T-CA-C-TCTC---GCTTTTAGC-T-----CACCA-TTG---A------GCA-GTC--TTGCTGCCAA----GAA------AGAGCTTAAGGTC-T-T-CTGCCTGCCAA-T-TA-TAG-CTCT-CAT-GC-AG-TA-TGACTAATGTGG-------------TTCTCCCCGAGGTAAC---ATGGT-AATTGGT--TAATCGC--AC--GGGC--C--AAGCTAACTCTACGGGG---TCTCGGAGGAGACT--G----GGCCCCCAGATGCATGACATGCTAGGCCCACCGGCGTGTGGA--TATGACCCGATGCT-TGC-AAACC--TAGTCCTCAGCTATGGGT-AAATAGC---------CGGTCA-----GATGA-G-GG----TCG---CA-GCCTTA-GTTGG-CAA----C------TCATCTGGGAGAGAAAACTCTCA------ATAAA--CCGGGTAGATCTGACTCAAAAGACATGGAA-G-GCAGCCAATCTATAGG---AAGGAGACC----T-ACATGTAGAAGGGA-----AAAAAA-ACCTGGTCCTCCAG-G--TAG-GGGGTTGAGCATGAGGCTAATTCAATAATCTCATCTCAT----AAAA--A-CA-AC---TGCCTTACAAAAACatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|6 : gtgAATTACTGT-G-TGA-TGC-GTAC--AGTGT--GTG-TGT--TGT-A-GT-GCG-T-------GTGCTT-G------T-CA-C-TCTC---GCTTTCAGC-C---T-TACCA-TTGGATA------GCA-G-C--TCGCTGC-AAAAGGTAA---CTAAATATGTAA-GTC-T-T-C--C-----------A-TAACCTCT-CAT-GC-AG-TA-AGACCAATGTGGTT-----------TCCTCCCCGAGGTAACAAAATGGT-AACTGGAATCA----C--AC--GGTT--C--CAG------NNNNNNNN---NNNNNNNNNN------N----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCGTGTGGA--TATGCCCTGATGCC-TGC-AAGCC--TAGTCCCCAGCTATGGGT-AAATAGC---------CGGCCA-----GATGA-G-GG----TCGCCCCG-A----G-G--GT-CGC-AGCC------T----TGGTTGGCAA----CTCA-ACTCTAAATAAACCGGTTAGATCTGACTCGTGAGCCATGGAA-G-GCAGCCAATCTATAGG---AAGGGAACC----T-A-----------GAAGAAGAAAAAA-ACCTGGCCCTCtg
gi|7 : tA--GTCGAGTGCGTAA-ATC-T-TAC--TCTGCCAG-TACA-AAGTATCTGCACTAC----TA-AGACTCCT----TCCA---ATG----CCTCCCCGTGGCAAT-GCATGTC-AACTGGG--GT--C-TA-GC--A-CC--C--CAGGCTAAATTGGAAGGGGATATCGGAGCA------ACAA-GGGCCCAAGAGATGTAGTATG-TAGGCCCACCGGCGTGTGGG--CATGCTTTAGCACT-CAT-CAACT--TTG-CCCCAGCTATGAGTCAAATAGC-----ATTACTGCCT-----TGTAA--TGGACTTTCT--TTT-C----A-G---T-CAA-AGGC------T-A--TGGGAGAAAA----CCCAGAC---AGAAAA-CCGGAGAGATGGCATCCTTTAGCAGAAAAA-T-GCAATC-ATCTA-AGGG-AAGGACAACC----C-A-----------GA-----GAGAAA-ACCCAATCCACCA--G--TGCGGAGGTTct
gi|8 : AATGGTTAT-G-TGA-GGC-ATAC--AGTGTATGTG-TGT--TGT-CTGT-GTC-T-------GTGCTT-G------C-A--C-TCTC---GCTTTCAGC-T---C-CACCC-CTTAATACATGTAGCA-G-T--TCGCTGAAAAAAAGGAA--GCAGAATGTGAAA-GTC-T-T-C--CCTGCTAG-G-TA-TAGCCAAT-CCA-A--AG-TT-AGACCTATGTGACCCAGATATAAGGTCCTCCTCGAGGTAGC-AGATGGA-AATTGGG--CA--C-CTAAC--GGCC--C--CAAGGAGAACCGCATGG---TCTTGAGAGACT----A----GGCCCCTAAATGCTAAGCATGCATGGCCCAATGGTATGTGGA--TATGCCCTGGTGTC-TGC-AAACC--TAGTCCCCAGTTATGGGT-AAATAGCAACAAACCATTGTTTTTTTGTGTGGAGTGG----TTG--TGG-C----A-T--GA-CAGTAGGC------T-A--tgtcatggcgtgaacagccccatactgtaaaaa
gi|9 : tTGT-G-TGA-TGC-ATCT--AGTGT--GTA--GA--TAT-G-G-----------------CTT-G------T-TATC-TCTC---GCTTTCAGCCT---C-CACCT-CTGACTA------GTA-G-A----AATGCGAACAGGGAGCTGCCTAGTGTATAA-GTA-T-C-T--CCTGTCAG-AACA-TAGCCTCT-C-C-AC-AACTATAGTCCTATGTA--------ATG----TCTCCATGTGACAAT-ACATGGT-AACTGGG--CA--C-T--GTGAGGCC--C--CAGGCTAAACTACAAGG---
Alignments
lowQualScore : 11 1111111111 1111111 11111 2222222 111111 2222 22222222222222 3333333 111 66666666666 1 2222222 111111 333333333333333333 111111 1111 111 1 1111111 333333333333333333 111111 11 222222 2222 2222222222 222222 11 222 1 2222 11 222 1 111111111 111 1 22222 111 111 1111 111111 333333333333333333 11 1 111 11
lowQualScore : 5 5 5 55 0 66 66 4 22 555 4 8888888888 4 3333333 4 4 11111 8888888 55 1 777777 4 9999999 3 55 2 3 3 3 6 77 0000 3 77777 44 3 3 33333333333333 1 4 0 4 66 2222222 66 66 66 1 1 1 444 1 00000000000 2 2 2 5 66 5 5 66 5 7 0000000 222222 777 555555555555555555 6666 4 4 222222 7777 1 0000 8 888 7 2 1 5 1 666 0 5555555 1 000000000000000000 333333 5 2 1 1 5 77 22 0 0 000000 2222 77 66 1111111111 88 1 3 1 999999 1 1 1 88 1 1 111 2 5 2 4444 88 000 1 1 1 1 1 1 0 3 00 4 0 999999999 444 0 0 1 3 8 88 8 1 1 1 00000 0 111 1 888 6 2222 1 2 999999 2 333333333333333333 00 77 8888 888 1 1 6 1 1 3 777 6 7 666 11
lowQualScore : . . . .. . .. .. . .. ... . .......... . ....... . . ..... ....... .. . ...... . ....... . .. . . . . . .. .... . ..... .. . . .............. . . . . .. ....... .. .. .. . . . ... . ........... . . . . .. . . .. . . ....... ...... ... .................. .... . . ...... .... . .... . ... . . . . . ... . ....... . .................. ...... . . . . . .. .. . . ...... .... .. .. .......... .. . . . ...... . . . .. . . ... . . . .... .. ... . . . . . . . . .. . . ......... ... . . . . . .. . . . . ..... . ... . ... . .... . . ...... . .................. .. .. .... ... . . . . . . ... . . ... ..
lowQualScore : 0 0 0 22 1 99 11 4 22 222 4 3333333333 4 8888888 4 4 11111 3333333 66 7 222222 4 9999999 1 00 8 3 3 3 7 99 9999 3 22222 88 3 6 77777777777777 0 4 1 4 11 1111111 11 11 11 1 1 4 000 3 99999999999 1 9 1 3 11 0 0 99 9 8 9999999 999999 222 444444444444444444 9999 4 4 888888 0000 0 6666 8 888 1 2 0 9 2 444 0 5555555 0 999999999999999999 555555 0 5 0 0 7 99 33 1 6 777777 1111 99 77 0000000000 88 0 8 0 000000 0 0 0 55 0 0 555 5 5 5 0000 00 000 0 0 0 0 0 0 0 2 55 2 2 555555555 888 0 2 0 2 8 88 0 0 0 4 00000 8 888 0 000 3 1111 9 2 222222 2 555555555555555555 22 77 7777 777 0 0 7 0 0 8 555 7 8 000 00
consensus : NNAAATGACTGT-G-TGA-CGC-GTAC--AGTGT--GTG-TGT--TGT-G-GT-GTC-T-------GTGCTT-G------TCA-CTCT-CGCT-----TTCAGC-T---C-CACCA-CTGGATA------GCA-G-C--TCGCTGCGAAAAGGGAA--GCCGAGTGCGTAA-GTC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TCG--TCG-G----A-G--GT-CAA-AGGC------T-A--TGGGAGANAA----CCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANGAAA-C-GCAATC-GTCTA-AGGG-AAAGAAAACC----C-A-----------GA-----NAGAAA-ACCCGANCCTCNAG-G--TAC-GAGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG----AAAA--A-NACAC---GA--TTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AACAGCT-CAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---C-A-C---A-G--C-AG-TGGAGTN-GCAATCGCGATGA-NNAAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
Reference ( family-1399 ) : NNAAATGACTGT-G-TGA-CGC-GTAC--AGTGT--GTG-TGT--TGT-G-GT-GTC-T-------GTGCTT-G------TCA-CTCT-CGCT-----TTCAGC-T---C-CACCA-CTGGATA------GCA-G-C--TCGCTGCGAAAAGGGAA--GCCGAGTGCGTAA-GTC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TCG--TCG-G----A-G--GT-CAA-AGGC------T-A--TGGGAGANAA----CCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANGAAA-C-GCAATC-GTCTA-AGGG-AAAGAAAACC----C-A-----------GA-----NAGAAA-ACCCGANCCTCNAG-G--TAC-GAGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG----AAAA--A-NACAC---GA--TTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AACAGCT-CAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---C-A-C---A-G--C-AG-TGGAGTN-GCAATCGCGATGA-NNAAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
gi|1 : TGACTGT-C-TGA-TGC-GC-C--AATGT--ATA-TATCTTGT-A-GT-GTC-T-------GTGCTT-G------TCA-CTCT-CGCT-----TGCAGCAT---T-CATCA-CTGGCTA------ACA-G-C--TTGCTGTGAAACGGAAA--GCCGAGAGCGTAA-GTC-T-T-T--CTTGCCAG-T-TA-CATCCTCT-CAT-AC-AG-TA-ATACCTATGTGGCCCAGATATGATATCCTCCTCGAGGTGAC-AGATGGA-AACTGGG--CA--T-CTAAC--GGCC--C--CAGGCAGAACCACAAGA---TCTCGGAGGA------GGTTTGGCCCCTAGATGCAAGGCATGCTAGGCCCACCGGTGAGTGGA--CATGCACTGTTGCC-TGC-AAACC--AAACCCCCAGCTATGGGT-GATTAAC-----CCCACTGCCT-----TGTGG-GTGG----CTG--AGG-A----A-A--GC-CTA-GGAA------T-A--TGGGAGACAA----CCCAGAC---AG-AAACCTGGAGAGATGCAATTCGTTAGCATGGTAA-C-GCAATC-ATCT--ACGT-AAGGAATACC----C-A-----------GA-----GAGAAA-ACCCGACCCGCCAGAG--TGC--AGGTTTGACGTTGGGCTAA-CA-----ACCCAGCTCTGTAA-AAAA--G-AACTT---G---TTACAGAAACCAGAAGC
gi|1 : GGAACGTTA-GAACAATG-----------------A----CAAGTAGCA--AAAGAAATGA-AAAACTATGGTATCGACATACTAGGTAT-AGTGAGAGTAGATGGA-AGGTATCAGGATAAA-----ACAAAATTCA-AAGCTGAG-ACACGGTGAAACATGTA-----GG------AGAT--GAAGAA---C-ATC---A-AGTC-AG-TGGAGTA-GCAATAATGATGAGTGAAAGAGCCAAGAA-A-TAACTG-AT-G-GATTGGACACCAATTGATAATA--GAATAATAAAAGCAgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctggaacgttagaacaatgacaagtagcaaaagaaatgaaaaactatggtatcgacatactaggtatagtgagagtagatggaaggtatcaggataaaacaaaattcaaagctgagacacggtgaaacatgtaggagatgaagaacatcaagtcagtggagtagcaataatgatgagtgaaagagccaagaaataactgatggattggacaccaattgataatagaataataaaagcaattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|10 : tgactgtctgatgcgccaatgtatatatcttgtagtgtctgtgcttgtcactctcgcttgcagcattcatcactggctaacagcttgctgtgaaacggaaagccgagagcgtaagtctttcttgccagttacatcctctcatacagtaatacctatgtggcccagatatgatatcctcctcgaggtgacagatggaaactgggcatctaacggccccaggcagaaccacaagatctcggaggaggtttggcccctagatgcaaggcatgctaggcccaccggtgagtggacatgcactgttgcctgcaaaccaaacccccagctatgggtgattaaccccactgccttgtgggtggctgaggaaagcctaggaatatgggagacaacccagacagaaacctggagagatgcaattcgttagcatggtaacgcaatcatctacgtaaggaatacccagagagaaaacccgacccgccagagtgcaggtttgacgttgggctaacaacccagctctgtaaaaaagaacttgttacagaaaccagaagcgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctCTATGGGTCAAATAGT-----TACACTGCCA-----TG-GG-ATGA----CCA----GAG----A-G--GT-AAA-ACGC------T-A--TGGGAGACAA----CCCAGAC---AGAAAGTCAAGACAGATGGAGTTTGCCAGCAAAGATA-CTGCAATC-GTCTA-AAGGCAAAGAAAAGC----C-T-----------GA-----CAGAAA-ACACTAACCTGGAG-G--TAT-TAGG-TGAGCGTAAGGCTAATCG-----CCTCACCTCGG----AAAA--AGGAGAT---GA--TTACGGAAACCAGAAGCAAGTattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|11 : AAATGACTGT-G--GA-CGC-TTAC--AGTGT--GTGGTGT--TGT-G-GT-GTCGT-------GTGCTT-G------CCC-CTTT-CGCT-----TTCAGC-------AACCAGTTGGATAA-----GCAAG-C--TTGCTGTGAAGAGCGAA--GCAGAATGAGTCA-GTC-T-T-CG-TCTTCCAA-C-TAATAGCCT-T-CAT-AC-AG-TA-AGACCTATGTGACCCAGATATGGGATTCCCAACGAGGTGAC-AGACGGTAAAATGGG--CA--C-CCTGC--GGCCGTC--AAGGCA
gi|12 : TGT--GTC-TAG--TGT-G-GTAGTT-TATGAGTAGTGCTTTG------T-A-CTTTTCGCT-----TTCAAA-T---AACACCA-TTGGATA------GCA-T-C--TA--TGTGAAAAGGAGA--GTCGAGTGCGTAA-GTC-TCT-C--CCTGCCAGTA-CA-TAGCCTCT-C-G-AT-TG-GA-AAAGCTATGT--CTCAG---TGG----TTCCCCGTAGTA
gi|13 : ttaGTAGATGGATCGG-ATCAGGAAATACTGTCTCAAA------CGGCC----ATACTAT----CGTTTACTCTGGA------AGATCAGATGAC---CAA-C---A-C--CGAGAAGGAGTA-GCGACCATCATGA-ATAAAGAAAGTGCAA-AATCTTTA-ATGG-AG-TGGGGACCCATt
gi|14 : gtgactGGAGCTTGA-GAACAATGTATGCCACTGGGA-AACAGCT-CAAATTGCC--AGAGAAATGA-AGAATTGCCATCTAGACATCCTTGGAATCAGCGAAAGCAGGTGGACAGG-GTCTAGAAAGA-----TCAAAATT-A-CATCTGGTAAGACAAT----CATATA
gi|15 : AT----CATTTACTCCGGA------AGATCAGACAACAATC-A-T---G-G--T-AA-TGAAGTT-GCAATCGCAATGA-CAAAAGAAACATCAA-AGTCATTGTAT-C-AA-TGGGCACCTATCAGTAACC--GAATAATAACAG
gi|16 : tcGAAACGGAGA--GTCGAGTGCGTAA-ATCTT-T-C--CTTGCCAGTA-TA-CAGCCTCT--AC-ACTAT-CA-AGAC
gi|17 : caaatcgaacgtctctagatcgctaacctacctgtagatCAAGG---TCTCGGAGGAATCTTTA----GGCCCGGAACTGCATGTGAGTCCAGGCCCACT-GCGTGTAGAATTAT-CCCT-GTACCGTGCAAAACCTATAGATCCCAAC-AAGGGTCAAATtccttcaaactg
gi|18 : AAGGGTATCTCGGAGTAGCG---A----GGACCCCAGGGGTACAGAACAC-AGGCCCACCAGCGTGTGAA--CACGCCCT
gi|19 : gTGAGCGTTGGGCCAATCC-----CCCTACCTCGG----AAAAGCA-TACAC---GA--TTGCGGAAACCTTGAACAAGTCAAATtactctc
gi|2 : AAATGACTGT-G-TGA-CAC-GTAC--AGTGT--GTG-TGTGTTGT-G-GT-GTC-T-------GTGCTT-G------ACA-CTTT-CGTT-----TTCAGC-TAGCCACACCG-CTGGATA------GCA-G-C--TTGCTGTGAAA-TGGAA--GCAGAATGAGTCG-GTC-T-T-C--CCTTCCAA-C-TA-TAGCCTCT-CAT-A---G-TA-AGACCTATGTGACCCAGATATGGGATCCTCCACAAGG-GGC-AGACGGT-AACTGGG--CA--C-CCTGC--GGCC--CGGCCGGCAGAATCACAAGG---TCTAGGAGGA------ATCTAGGCCCCTAGATGCATGGTAAACCAGGCCAACAGGCGTGTAGA--TATGCCCTGATACC-TGC-AAACC--TAGATCGCAACTATGGATCAAATAGT-----TCCACTGCCT-----TGTGG-ATGG----TTT--TTG-G----ATA--GT-CAA-AGGCTACTTAT-A--TGGAAGTAAA----TCCAGAC---AGAAAATCCGGGTAGATAGAACTCGTCAGCAA--AA----GCTATC-GTCT-------------AACCACTAC-A-----------GA-----AAAAAA-AGCTGGCCCTCTAA-ACTCAA-GGGGCAGAACGTAGGGTTAATCA-----CCCAACCTCGGTAAAAAAA--A-AATCCTGAGA--TTACAGAAACATCGCTAAAG-CAAACAATCTTTCTCGTCTAAGACTTGAAAAAGAACAGAC---CAACAAAACCCGAA-AGCAGC----AGATGACGCGA--AAGCCGACGGAGCCAAA
gi|2 : ACAAT----TATTTACTCTGGAAATAGCAGCCCAGATGAT---C-A-CATGA-G--A-AG--GGAGTT-GCATTTCTAATGA-AAATAAAATCTAAAA-AGTCTTTAC-T-GCAA-TGGAATCCCATT--TTACCTAGAATTATTACAGCAtataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacacaattatttactctggaaatagcagcccagatgatcacatgagaagggagttgcatttctaatgaaaataaaatctaaaaagtctttactgcaatggaatcccattttacctagaattattacagcaagattcaactctagttttcaaaacaca
gi|20 : aaatgactgtgtgacacgtacagtgtgtgtgtgttgtggtgtctgtgcttgacactttcgttttcagctagccacaccgctggatagcagcttgctgtgaaatggaagcagaatgagtcggtcttcccttccaactatagcctctcatagtaagacctatgtgacccagatatgggatcctccacaaggggcagacggtaactgggcaccctgcggcccggccggcagaatcacaaggtctaggaggaatctaggcccctagatgcatggtaaaccaggccaacaggcgtgtagatatgccctgatacctgcaaacctagatcgcaactatggatcaaatagttccactgccttgtggatggtttttggatagtcaaaggctacttatatggaagtaaatccagacagaaaatccgggtagatagaactcgtcagcaaaagctatcgtctaaccactacagaaaaaaaagctggccctctaaactcaaggggcagaacgtagggttaatcacccaacctcggtaaaaaaaaaatcctgagattacagaaacatcgctaaagcaaacaatctttctcgtctaagacttgaaaaagaacagaccaacaaaacccgaaagcagcagatgacgcgaaagccgacggagccaaatataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacGTGCGTTA-ATC-T-TGC--CCTGCCAGTA-CA-AAGCCTCT--AC-AC-TG-Tagattcaactctagttttcaaaacaca
gi|3 : ctagcctacttgtagAAATGACTGT-GATG--CGCAGTACTTAGTGT--G-G-TTT--TGT-G-GT-GTC-A-------ATGCTT-AAATTGATCA-------GCTCAAAGTTCAGA-T---C-CACCT-CTGGCTA------GCA-G-AGATGTCTGCGAAAACAGAA--GCAGAGTGTGTAG-GTC-T-T-C--CCTACCAG-G--A-TAGCCTCT-CAA-AC-AG-TA-AGACCTGTGTGGCCCAGATATGGGATCCCCCATGAGGTGAC-AGATGGT-AACTGGG--GA--T-C--GC-----T--C--CAGTTAAAACCACAGGG---TTT------------------GGCCCCCAGATGCGTGATATACAAGACCCACCGGTGAGTGGA--CATGCCCTGGTGCC-CGC-AAACC--AAACCCCCAGCTAGAGGT-AAATAGT-----ACCACTGCCT-----TGTGG-GTAG----TAA--TCG-GT---A-G--ATACAA-AGGC------T-A--CGGGAGCAAA----CCCA-AC---AGAAAACCCGGACAGATGGAGTTCGTAAGCAGCGTAATC-GCAATC-GTCTA-AGGG-AATGAAAACC----CCA-----------AA-----CAGAAGCAC---AACCCCGAG-G--TAC-AAGGTTGATCGTAGGGCCAATCC-----CCCTACCTCGG----AAAA--A-CACACAA-GA--TTACGGAAACCTTGATCAAGTCAAATAGTATT------CAAAGAGTGG--GAAGACCAGCCATTCAACGCGACCCAAATAGAGGCGTAAAGATGACGTGGACAAGTCAA---ACCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCCAACCCCAAAGTTACAAGAAAGATTGGTACATGGAACGTGA-GAACAATGTATGTCACCGGGATAACAGCT-CAAATTGCC--AGAGAAATGA-AGAATTACCATCTAGACATCCTAGGAATCAACGAAAGCAGGCGGACAGG-GCCTGGAAAGA-----TCAAAATT-A-CATCTGGTGAGACAAT----CATATACTCTGGC------AGAACAGATGAC---C-A-C---A-G--C-AG-TGGCGTA-GCTATAATGATGA-GCAACGAAGCAGCAATAG-CACTAGAT-G-AA-TGGGCACC-------AAAC--GATTAGTAGCATCAT
gi|4 : tcTAGT-----TCCACTGTAT------GTGG-ATGA----CCA--TGA-G----A-G--GT-CAA-AGGT------T-A--TGGGAGACA------CCAGAA---AGAAAATCCGGACAGATGGAGTTCGTCAGCAAAGATA-CTGCAATC-GTCTA-AGTG-AGAGAAAACC----C-T-----------GA-----CAGAAA-ACACGAACCTGGAG-G--TAC-TAGGTTGAGCGAAAGGCTAATCCA----CCTCACCTCGA----AAAA--A-GAGAT---GA--TCACAGAAACCAGAAGCAAGCCAAATTTTAT
gi|4 : GCAAACCCCAAGTTCACCAGGAGAATTGAAACACGGAACGTCCCGTACCATGTATGCTACTGGAA-AA--ACTGCACAGTGCATGAAAGAAAAGGCGGAGCTATCACTTAGATATATTAGGA-TAAGTGAATGCAGATGGAC-GG-GTACGGGCAAA-----TAAACACC-AACACCGGAT-AGATCAT----CATTTACTCCGGA------AGATCAGACAAC---A-A-CC--ATG--T-AA-TGGAGTTTGCAATTGCAATGA-CAAAAGAAACATCAA-AGTCGTTGTAT-G-AT-AGGGCACCTATCAGTAACC--GAATAATAACAGCAaagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccagcaaaccccaagttcaccaggagaattgaaacacggaacgtcccgtaccatgtatgctactggaaaaactgcacagtgcatgaaagaaaaggcggagctatcacttagatatattaggataagtgaatgcagatggacgggtacgggcaaataaacaccaacaccggatagatcatcatttactccggaagatcagacaacaaccatgtaatggagtttgcaattgcaatgacaaaagaaacatcaaagtcgttgtatgatagggcacctatcagtaaccgaataataacagcaatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|5 : tagttccactgtatgtggatgaccatgagaggtcaaaggttatgggagacaccagaaagaaaatccggacagatggagttcgtcagcaaagatactgcaatcgtctaagtgagagaaaaccctgacagaaaacacgaacctggaggtactaggttgagcgaaaggctaatccacctcacctcgaaaaaagagatgatcacagaaaccagaagcaagccaaattttataagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccaATGACTGTTG-TGATCGC-TTAC--AGTGT--GTG-TGT--TGTAG-GT-GT--T-------GTGTTT-G------TCA-CTCT-CGCT-----TTTAGC-T-----CACCA-TTG---A------GCA-GTC--TTGCTGCCAA----GAA------AGAGCTTAAGGTC-T-T-CTGCCTGCCAA-T-TA-TAG-CTCT-CAT-GC-AG-TA-TGACTAATGTGG-------------TTCTCCCCGAGGTAAC---ATGGT-AATTGGT--TAATCGC--AC--GGGC--C--AAGCTAACTCTACGGGG---TCTCGGAGGAGACT--G----GGCCCCCAGATGCATGACATGCTAGGCCCACCGGCGTGTGGA--TATGACCCGATGCT-TGC-AAACC--TAGTCCTCAGCTATGGGT-AAATAGC---------CGGTCA-----GATGA-G-GG----TCG---CA-GCCTTA-GTTGG-CAA----C------TCATCTGGGAGAGAAAACTCTCA------ATAAA--CCGGGTAGATCTGACTCAAAAGACATGGAA-G-GCAGCCAATCTATAGG---AAGGAGACC----T-ACATGTAGAAGGGA-----AAAAAA-ACCTGGTCCTCCAG-G--TAG-GGGGTTGAGCATGAGGCTAATTCAATAATCTCATCTCAT----AAAA--A-CA-AC---TGCCTTACAAAAACatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|6 : gtgAATTACTGT-G-TGA-TGC-GTAC--AGTGT--GTG-TGT--TGT-A-GT-GCG-T-------GTGCTT-G------TCA-CTCT-CGCT-----TTCAGC-C---T-TACCA-TTGGATA------GCA-G-C--TCGCTGC-AAAAGGTAA---CTAAATATGTAA-GTC-T-T-C--C-----------A-TAACCTCT-CAT-GC-AG-TA-AGACCAATGTGGTT-----------TCCTCCCCGAGGTAACAAAATGGT-AACTGGAATCA----C--AC--GGTT--C--CAG------NNNNNNNN---NNNNNNNNNN------N----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCGTGTGGA--TATGCCCTGATGCC-TGC-AAGCC--TAGTCCCCAGCTATGGGT-AAATAGC---------CGGCCA-----GATGA-G-GG----TCGCCCCG-A----G-G--GT-CGC-AGCC------T----TGGTTGGCAA----CTCA-ACTCTAAATAAACCGGTTAGATCTGACTCGTGAGCCATGGAA-G-GCAGCCAATCTATAGG---AAGGGAACC----T-A-----------GAAGAAGAAAAAA-ACCTGGCCCTCtg
gi|7 : tA--GTCGAGTGCGTAA-ATC-T-TAC--TCTGCCAG-TACA-AAGTATCTGCACTAC----TA-AGACTCCT----TCCA---ATG----CCTCCCCGTGGCAAT-GCATGTC-AACTGGG--GT--C-TA-GC--A-CC--C--CAGGCTAAATTGGAAGGGGATATCGGAGCA------ACAA-GGGCCCAAGAGATGTAGTATG-TAGGCCCACCGGCGTGTGGG--CATGCTTTAGCACT-CAT-CAACT--TTG-CCCCAGCTATGAGTCAAATAGC-----ATTACTGCCT-----TGTAA--TGGACTTTCT--TTT-C----A-G---T-CAA-AGGC------T-A--TGGGAGAAAA----CCCAGAC---AGAAAA-CCGGAGAGATGGCATCCTTTAGCAGAAAAA-T-GCAATC-ATCTA-AGGG-AAGGACAACC----C-A-----------GA-----GAGAAA-ACCCAATCCACCA--G--TGCGGAGGTTct
gi|8 : AATGGTTAT-G-TGA-GGC-ATAC--AGTGTATGTG-TGT--TGT-CTGT-GTC-T-------GTGCTT-G-------CA-CTCT-CGCT-----TTCAGC-T---C-CACCC-CTTAATACATGTAGCA-G-T--TCGCTGAAAAAAAGGAA--GCAGAATGTGAAA-GTC-T-T-C--CCTGCTAG-G-TA-TAGCCAAT-CCA-A--AG-TT-AGACCTATGTGACCCAGATATAAGGTCCTCCTCGAGGTAGC-AGATGGA-AATTGGG--CA--C-CTAAC--GGCC--C--CAAGGAGAACCGCATGG---TCTTGAGAGACT----A----GGCCCCTAAATGCTAAGCATGCATGGCCCAATGGTATGTGGA--TATGCCCTGGTGTC-TGC-AAACC--TAGTCCCCAGTTATGGGT-AAATAGCAACAAACCATTGTTTTTTTGTGTGGAGTGG----TTG--TGG-C----A-T--GA-CAGTAGGC------T-A--tgtcatggcgtgaacagccccatactgtaaaaa
gi|9 : tTGT-G-TGA-TGC-ATCT--AGTGT--GTA--GA--TAT-G-G-----------------CTT-G------TTATCTCT-CGCT-----TTCAGCCT---C-CACCT-CTGACTA------GTA-G-A----AATGCGAACAGGGAGCTGCCTAGTGTATAA-GTA-T-C-T--CCTGTCAG-AACA-TAGCCTCT-C-C-AC-AACTATAGTCCTATGTA--------ATG----TCTCCATGTGACAAT-ACATGGT-AACTGGG--CA--C-T--GTGAGGCC--C--CAGGCTAAACTACAAGG---
Alignments
lowQualScore : 11 1111111111 1111111 11111 2222222 111111 2222 22222222222222 3333333 111 66666666666 1 2222222 111111 333333333333333333 111111 1111 111 1 1111111 333333333333333333 111111 11 222222 2222 2222222222 222222 11 222 1 2222 11 222 1 111111111 111 1 22222 111 111 1111 111111 333333333333333333 11 1 111 11
lowQualScore : 5 5 5 55 0 66 66 4 22 555 4 8888888888 4 3333333 4 4 11111 8888888 55 1 777777 4 9999999 3 55 2 3 3 3 6 77 0000 3 77777 44 3 3 33333333333333 1 4 0 4 66 2222222 66 66 66 1 1 1 444 1 00000000000 2 2 2 5 66 5 5 66 5 7 0000000 222222 777 555555555555555555 6666 4 4 222222 7777 1 0000 8 888 7 2 1 5 1 666 0 5555555 1 000000000000000000 333333 5 2 1 1 5 77 22 0 0 000000 2222 77 66 1111111111 88 1 3 1 999999 1 1 1 88 1 1 111 2 5 2 4444 88 000 1 1 1 1 1 1 0 3 00 4 0 999999999 444 0 0 1 3 8 88 8 1 1 1 00000 0 111 1 888 6 2222 1 2 999999 2 333333333333333333 00 77 8888 888 1 1 6 1 1 3 777 6 7 666 11
lowQualScore : . . . .. . .. .. . .. ... . .......... . ....... . . ..... ....... .. . ...... . ....... . .. . . . . . .. .... . ..... .. . . .............. . . . . .. ....... .. .. .. . . . ... . ........... . . . . .. . . .. . . ....... ...... ... .................. .... . . ...... .... . .... . ... . . . . . ... . ....... . .................. ...... . . . . . .. .. . . ...... .... .. .. .......... .. . . . ...... . . . .. . . ... . . . .... .. ... . . . . . . . . .. . . ......... ... . . . . . .. . . . . ..... . ... . ... . .... . . ...... . .................. .. .. .... ... . . . . . . ... . . ... ..
lowQualScore : 0 0 0 22 1 99 11 4 22 222 4 3333333333 4 8888888 4 4 11111 3333333 66 7 222222 4 9999999 1 00 8 3 3 3 7 99 9999 3 22222 88 3 6 77777777777777 0 4 1 4 11 1111111 11 11 11 1 1 4 000 3 99999999999 1 9 1 3 11 0 0 99 9 8 9999999 999999 222 444444444444444444 9999 4 4 888888 0000 0 6666 8 888 1 2 0 9 2 444 0 5555555 0 999999999999999999 555555 0 5 0 0 7 99 33 1 6 777777 1111 99 77 0000000000 88 0 8 0 000000 0 0 0 55 0 0 555 5 5 5 0000 00 000 0 0 0 0 0 0 0 2 55 2 2 555555555 888 0 2 0 2 8 88 0 0 0 4 00000 8 888 0 000 3 1111 9 2 222222 2 555555555555555555 22 77 7777 777 0 0 7 0 0 8 555 7 8 000 00
consensus : NNAAATGACTGT-G-TGA-CGC-GTAC--AGTGT--GTG-TGT--TGT-G-GT-GTC-T-------GTGCTT-G------TCA-CTCT-CGCT-----TTCAGC-T---C-CACCA-CTGGATA------GCA-G-C--TCGCTGCGAAAAGGGAA--GCCGAGTGCGTAA-GTC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TCG--TCG-G----A-G--GT-CAA-AGGC------T-A--TGGGAGANAA----CCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANGAAA-C-GCAATC-GTCTA-AGGG-AAAGAAAACC----C-A-----------GA-----NAGAAA-ACCCGANCCTCNAG-G--TAC-GAGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG----AAAA--A-NACAC---GA--TTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AACAGCT-CAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---C-A-C---A-G--C-AG-TGGAGTN-GCAATCGCGATGA-NNAAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
Reference ( family-1399 ) : NNAAATGACTGT-G-TGA-CGC-GTAC--AGTGT--GTG-TGT--TGT-G-GT-GTC-T-------GTGCTT-G------TCA-CTCT-CGCT-----TTCAGC-T---C-CACCA-CTGGATA------GCA-G-C--TCGCTGCGAAAAGGGAA--GCCGAGTGCGTAA-GTC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TCG--TCG-G----A-G--GT-CAA-AGGC------T-A--TGGGAGANAA----CCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANGAAA-C-GCAATC-GTCTA-AGGG-AAAGAAAACC----C-A-----------GA-----NAGAAA-ACCCGANCCTCNAG-G--TAC-GAGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG----AAAA--A-NACAC---GA--TTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AACAGCT-CAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---C-A-C---A-G--C-AG-TGGAGTN-GCAATCGCGATGA-NNAAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
gi|1 : TGACTGT-C-TGA-TGC-GC-C--AATGT--ATA-TATCTTGT-A-GT-GTC-T-------GTGCTT-G------TCA-CTCT-CGCT-----TGCAGCAT---T-CATCA-CTGGCTA------ACA-G-C--TTGCTGTGAAACGGAAA--GCCGAGAGCGTAA-GTC-T-T-T--CTTGCCAG-T-TA-CATCCTCT-CAT-AC-AG-TA-ATACCTATGTGGCCCAGATATGATATCCTCCTCGAGGTGAC-AGATGGA-AACTGGG--CA--T-CTAAC--GGCC--C--CAGGCAGAACCACAAGA---TCTCGGAGGA------GGTTTGGCCCCTAGATGCAAGGCATGCTAGGCCCACCGGTGAGTGGA--CATGCACTGTTGCC-TGC-AAACC--AAACCCCCAGCTATGGGT-GATTAAC-----CCCACTGCCT-----TGTGG-GTGG----CTG--AGG-A----A-A--GC-CTA-GGAA------T-A--TGGGAGACAA----CCCAGAC---AG-AAACCTGGAGAGATGCAATTCGTTAGCATGGTAA-C-GCAATC-ATCT--ACGT-AAGGAATACC----C-A-----------GA-----GAGAAA-ACCCGACCCGCCAGAG--TGC--AGGTTTGACGTTGGGCTAA-CA-----ACCCAGCTCTGTAA-AAAA--G-AACTT---G---TTACAGAAACCAGAAGC
gi|1 : GGAACGTTA-GAACAATG-----------------A----CAAGTAGCA--AAAGAAATGA-AAAACTATGGTATCGACATACTAGGTAT-AGTGAGAGTAGATGGA-AGGTATCAGGATAAA-----ACAAAATTCA-AAGCTGAG-ACACGGTGAAACATGTA-----GG------AGAT--GAAGAA---C-ATC---A-AGTC-AG-TGGAGTA-GCAATAATGATGAGTGAAAGAGCCAAGAA-A-TAACTG-AT-G-GATTGGACACCAATTGATAATA--GAATAATAAAAGCAgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctggaacgttagaacaatgacaagtagcaaaagaaatgaaaaactatggtatcgacatactaggtatagtgagagtagatggaaggtatcaggataaaacaaaattcaaagctgagacacggtgaaacatgtaggagatgaagaacatcaagtcagtggagtagcaataatgatgagtgaaagagccaagaaataactgatggattggacaccaattgataatagaataataaaagcaattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|10 : tgactgtctgatgcgccaatgtatatatcttgtagtgtctgtgcttgtcactctcgcttgcagcattcatcactggctaacagcttgctgtgaaacggaaagccgagagcgtaagtctttcttgccagttacatcctctcatacagtaatacctatgtggcccagatatgatatcctcctcgaggtgacagatggaaactgggcatctaacggccccaggcagaaccacaagatctcggaggaggtttggcccctagatgcaaggcatgctaggcccaccggtgagtggacatgcactgttgcctgcaaaccaaacccccagctatgggtgattaaccccactgccttgtgggtggctgaggaaagcctaggaatatgggagacaacccagacagaaacctggagagatgcaattcgttagcatggtaacgcaatcatctacgtaaggaatacccagagagaaaacccgacccgccagagtgcaggtttgacgttgggctaacaacccagctctgtaaaaaagaacttgttacagaaaccagaagcgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctCTATGGGTCAAATAGT-----TACACTGCCA-----TG-GG-ATGA----CCA----GAG----A-G--GT-AAA-ACGC------T-A--TGGGAGACAA----CCCAGAC---AGAAAGTCAAGACAGATGGAGTTTGCCAGCAAAGATA-CTGCAATC-GTCTA-AAGGCAAAGAAAAGC----C-T-----------GA-----CAGAAA-ACACTAACCTGGAG-G--TAT-TAGG-TGAGCGTAAGGCTAATCG-----CCTCACCTCGG----AAAA--AGGAGAT---GA--TTACGGAAACCAGAAGCAAGTattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|11 : AAATGACTGT-G--GA-CGC-TTAC--AGTGT--GTGGTGT--TGT-G-GT-GTCGT-------GTGCTT-G------CCC-CTTT-CGCT-----TTCAGC-------AACCAGTTGGATAA-----GCAAG-C--TTGCTGTGAAGAGCGAA--GCAGAATGAGTCA-GTC-T-T-CG-TCTTCCAA-C-TAATAGCCT-T-CAT-AC-AG-TA-AGACCTATGTGACCCAGATATGGGATTCCCAACGAGGTGAC-AGACGGTAAAATGGG--CA--C-CCTGC--GGCCGTC--AAGGCA
gi|12 : TGT--GTC-TAG--TGT-G-GTAGTT-TATGAGTAGTGCTTTG------T-A-CTTTTCGCT-----TTCAAA-T---AACACCA-TTGGATA------GCA-T-C--TA--TGTGAAAAGGAGA--GTCGAGTGCGTAA-GTC-TCT-C--CCTGCCAGTA-CA-TAGCCTCT-C-G-AT-TG-GA-AAAGCTATGT--CTCAG---TGG----TTCCCCGTAGTA
gi|13 : ttaGTAGATGGATCGG-ATCAGGAAATACTGTCTCAAA------CGGCC----ATACTAT----CGTTTACTCTGGA------AGATCAGATGAC---CAA-C---A-C--CGAGAAGGAGTA-GCGACCATCATGA-ATAAAGAAAGTGCAA-AATCTTTA-ATGG-AG-TGGGGACCCATt
gi|14 : gtgactGGAGCTTGA-GAACAATGTATGCCACTGGGA-AACAGCT-CAAATTGCC--AGAGAAATGA-AGAATTGCCATCTAGACATCCTTGGAATCAGCGAAAGCAGGTGGACAGG-GTCTAGAAAGA-----TCAAAATT-A-CATCTGGTAAGACAAT----CATATA
gi|15 : AT----CATTTACTCCGGA------AGATCAGACAACAATC-A-T---G-G--T-AA-TGAAGTT-GCAATCGCAATGA-CAAAAGAAACATCAA-AGTCATTGTAT-C-AA-TGGGCACCTATCAGTAACC--GAATAATAACAG
gi|16 : tcGAAACGGAGA--GTCGAGTGCGTAA-ATCTT-T-C--CTTGCCAGTA-TA-CAGCCTCT--AC-ACTAT-CA-AGAC
gi|17 : caaatcgaacgtctctagatcgctaacctacctgtagatCAAGG---TCTCGGAGGAATCTTTA----GGCCCGGAACTGCATGTGAGTCCAGGCCCACT-GCGTGTAGAATTAT-CCCT-GTACCGTGCAAAACCTATAGATCCCAAC-AAGGGTCAAATtccttcaaactg
gi|18 : AAGGGTATCTCGGAGTAGCG---A----GGACCCCAGGGGTACAGAACAC-AGGCCCACCAGCGTGTGAA--CACGCCCT
gi|19 : gTGAGCGTTGGGCCAATCC-----CCCTACCTCGG----AAAAGCA-TACAC---GA--TTGCGGAAACCTTGAACAAGTCAAATtactctc
gi|2 : AAATGACTGT-G-TGA-CAC-GTAC--AGTGT--GTG-TGTGTTGT-G-GT-GTC-T-------GTGCTT-G------ACA-CTTT-CGTT-----TTCAGC-TAGCCACACCG-CTGGATA------GCA-G-C--TTGCTGTGAAA-TGGAA--GCAGAATGAGTCG-GTC-T-T-C--CCTTCCAA-C-TA-TAGCCTCT-CAT-A---G-TA-AGACCTATGTGACCCAGATATGGGATCCTCCACAAGG-GGC-AGACGGT-AACTGGG--CA--C-CCTGC--GGCC--CGGCCGGCAGAATCACAAGG---TCTAGGAGGA------ATCTAGGCCCCTAGATGCATGGTAAACCAGGCCAACAGGCGTGTAGA--TATGCCCTGATACC-TGC-AAACC--TAGATCGCAACTATGGATCAAATAGT-----TCCACTGCCT-----TGTGG-ATGG----TTT--TTG-G----ATA--GT-CAA-AGGCTACTTAT-A--TGGAAGTAAA----TCCAGAC---AGAAAATCCGGGTAGATAGAACTCGTCAGCAA--AA----GCTATC-GTCT-------------AACCACTAC-A-----------GA-----AAAAAA-AGCTGGCCCTCTAA-ACTCAA-GGGGCAGAACGTAGGGTTAATCA-----CCCAACCTCGGTAAAAAAA--A-AATCCTGAGA--TTACAGAAACATCGCTAAAG-CAAACAATCTTTCTCGTCTAAGACTTGAAAAAGAACAGAC---CAACAAAACCCGAA-AGCAGC----AGATGACGCGA--AAGCCGACGGAGCCAAA
gi|2 : ACAAT----TATTTACTCTGGAAATAGCAGCCCAGATGAT---C-A-CATGA-G--A-AG--GGAGTT-GCATTTCTAATGA-AAATAAAATCTAAAA-AGTCTTTAC-T-GCAA-TGGAATCCCATT--TTACCTAGAATTATTACAGCAtataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacacaattatttactctggaaatagcagcccagatgatcacatgagaagggagttgcatttctaatgaaaataaaatctaaaaagtctttactgcaatggaatcccattttacctagaattattacagcaagattcaactctagttttcaaaacaca
gi|20 : aaatgactgtgtgacacgtacagtgtgtgtgtgttgtggtgtctgtgcttgacactttcgttttcagctagccacaccgctggatagcagcttgctgtgaaatggaagcagaatgagtcggtcttcccttccaactatagcctctcatagtaagacctatgtgacccagatatgggatcctccacaaggggcagacggtaactgggcaccctgcggcccggccggcagaatcacaaggtctaggaggaatctaggcccctagatgcatggtaaaccaggccaacaggcgtgtagatatgccctgatacctgcaaacctagatcgcaactatggatcaaatagttccactgccttgtggatggtttttggatagtcaaaggctacttatatggaagtaaatccagacagaaaatccgggtagatagaactcgtcagcaaaagctatcgtctaaccactacagaaaaaaaagctggccctctaaactcaaggggcagaacgtagggttaatcacccaacctcggtaaaaaaaaaatcctgagattacagaaacatcgctaaagcaaacaatctttctcgtctaagacttgaaaaagaacagaccaacaaaacccgaaagcagcagatgacgcgaaagccgacggagccaaatataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacGTGCGTTA-ATC-T-TGC--CCTGCCAGTA-CA-AAGCCTCT--AC-AC-TG-Tagattcaactctagttttcaaaacaca
gi|3 : ctagcctacttgtagAAATGACTGT-GATG--CGCAGTACTTAGTGT--G-G-TTT--TGT-G-GT-GTC-A-------ATGCTT-AAATTGATCA-------GCTCAAAGTTCAGA-T---C-CACCT-CTGGCTA------GCA-G-AGATGTCTGCGAAAACAGAA--GCAGAGTGTGTAG-GTC-T-T-C--CCTACCAG-G--A-TAGCCTCT-CAA-AC-AG-TA-AGACCTGTGTGGCCCAGATATGGGATCCCCCATGAGGTGAC-AGATGGT-AACTGGG--GA--T-C--GC-----T--C--CAGTTAAAACCACAGGG---TTT------------------GGCCCCCAGATGCGTGATATACAAGACCCACCGGTGAGTGGA--CATGCCCTGGTGCC-CGC-AAACC--AAACCCCCAGCTAGAGGT-AAATAGT-----ACCACTGCCT-----TGTGG-GTAG----TAA--TCG-GT---A-G--ATACAA-AGGC------T-A--CGGGAGCAAA----CCCA-AC---AGAAAACCCGGACAGATGGAGTTCGTAAGCAGCGTAATC-GCAATC-GTCTA-AGGG-AATGAAAACC----CCA-----------AA-----CAGAAGCAC---AACCCCGAG-G--TAC-AAGGTTGATCGTAGGGCCAATCC-----CCCTACCTCGG----AAAA--A-CACACAA-GA--TTACGGAAACCTTGATCAAGTCAAATAGTATT------CAAAGAGTGG--GAAGACCAGCCATTCAACGCGACCCAAATAGAGGCGTAAAGATGACGTGGACAAGTCAA---ACCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCCAACCCCAAAGTTACAAGAAAGATTGGTACATGGAACGTGA-GAACAATGTATGTCACCGGGATAACAGCT-CAAATTGCC--AGAGAAATGA-AGAATTACCATCTAGACATCCTAGGAATCAACGAAAGCAGGCGGACAGG-GCCTGGAAAGA-----TCAAAATT-A-CATCTGGTGAGACAAT----CATATACTCTGGC------AGAACAGATGAC---C-A-C---A-G--C-AG-TGGCGTA-GCTATAATGATGA-GCAACGAAGCAGCAATAG-CACTAGAT-G-AA-TGGGCACC-------AAAC--GATTAGTAGCATCAT
gi|4 : tcTAGT-----TCCACTGTAT------GTGG-ATGA----CCA--TGA-G----A-G--GT-CAA-AGGT------T-A--TGGGAGACA------CCAGAA---AGAAAATCCGGACAGATGGAGTTCGTCAGCAAAGATA-CTGCAATC-GTCTA-AGTG-AGAGAAAACC----C-T-----------GA-----CAGAAA-ACACGAACCTGGAG-G--TAC-TAGGTTGAGCGAAAGGCTAATCCA----CCTCACCTCGA----AAAA--A-GAGAT---GA--TCACAGAAACCAGAAGCAAGCCAAATTTTAT
gi|4 : GCAAACCCCAAGTTCACCAGGAGAATTGAAACACGGAACGTCCCGTACCATGTATGCTACTGGAA-AA--ACTGCACAGTGCATGAAAGAAAAGGCGGAGCTATCACTTAGATATATTAGGA-TAAGTGAATGCAGATGGAC-GG-GTACGGGCAAA-----TAAACACC-AACACCGGAT-AGATCAT----CATTTACTCCGGA------AGATCAGACAAC---A-A-CC--ATG--T-AA-TGGAGTTTGCAATTGCAATGA-CAAAAGAAACATCAA-AGTCGTTGTAT-G-AT-AGGGCACCTATCAGTAACC--GAATAATAACAGCAaagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccagcaaaccccaagttcaccaggagaattgaaacacggaacgtcccgtaccatgtatgctactggaaaaactgcacagtgcatgaaagaaaaggcggagctatcacttagatatattaggataagtgaatgcagatggacgggtacgggcaaataaacaccaacaccggatagatcatcatttactccggaagatcagacaacaaccatgtaatggagtttgcaattgcaatgacaaaagaaacatcaaagtcgttgtatgatagggcacctatcagtaaccgaataataacagcaatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|5 : tagttccactgtatgtggatgaccatgagaggtcaaaggttatgggagacaccagaaagaaaatccggacagatggagttcgtcagcaaagatactgcaatcgtctaagtgagagaaaaccctgacagaaaacacgaacctggaggtactaggttgagcgaaaggctaatccacctcacctcgaaaaaagagatgatcacagaaaccagaagcaagccaaattttataagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccaATGACTGTTG-TGATCGC-TTAC--AGTGT--GTG-TGT--TGTAG-GT-GT--T-------GTGTTT-G------TCA-CTCT-CGCT-----TTTAGC-T-----CACCA-TTG---A------GCA-GTC--TTGCTGCCAA----GAA------AGAGCTTAAGGTC-T-T-CTGCCTGCCAA-T-TA-TAG-CTCT-CAT-GC-AG-TA-TGACTAATGTGG-------------TTCTCCCCGAGGTAAC---ATGGT-AATTGGT--TAATCGC--AC--GGGC--C--AAGCTAACTCTACGGGG---TCTCGGAGGAGACT--G----GGCCCCCAGATGCATGACATGCTAGGCCCACCGGCGTGTGGA--TATGACCCGATGCT-TGC-AAACC--TAGTCCTCAGCTATGGGT-AAATAGC---------CGGTCA-----GATGA-G-GG----TCG---CA-GCCTTA-GTTGG-CAA----C------TCATCTGGGAGAGAAAACTCTCA------ATAAA--CCGGGTAGATCTGACTCAAAAGACATGGAA-G-GCAGCCAATCTATAGG---AAGGAGACC----T-ACATGTAGAAGGGA-----AAAAAA-ACCTGGTCCTCCAG-G--TAG-GGGGTTGAGCATGAGGCTAATTCAATAATCTCATCTCAT----AAAA--A-CA-AC---TGCCTTACAAAAACatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|6 : gtgAATTACTGT-G-TGA-TGC-GTAC--AGTGT--GTG-TGT--TGT-A-GT-GCG-T-------GTGCTT-G------TCA-CTCT-CGCT-----TTCAGC-C---T-TACCA-TTGGATA------GCA-G-C--TCGCTGC-AAAAGGTAA---CTAAATATGTAA-GTC-T-T-C--C-----------A-TAACCTCT-CAT-GC-AG-TA-AGACCAATGTGGTT-----------TCCTCCCCGAGGTAACAAAATGGT-AACTGGAATCA----C--AC--GGTT--C--CAG------NNNNNNNN---NNNNNNNNNN------N----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCGTGTGGA--TATGCCCTGATGCC-TGC-AAGCC--TAGTCCCCAGCTATGGGT-AAATAGC---------CGGCCA-----GATGA-G-GG----TCGCCCCG-A----G-G--GT-CGC-AGCC------T----TGGTTGGCAA----CTCA-ACTCTAAATAAACCGGTTAGATCTGACTCGTGAGCCATGGAA-G-GCAGCCAATCTATAGG---AAGGGAACC----T-A-----------GAAGAAGAAAAAA-ACCTGGCCCTCtg
gi|7 : tA--GTCGAGTGCGTAA-ATC-T-TAC--TCTGCCAG-TACA-AAGTATCTGCACTAC----TA-AGACTCCT----TCCA---ATG----CCTCCCCGTGGCAAT-GCATGTC-AACTGGG--GT--C-TA-GC--A-CC--C--CAGGCTAAATTGGAAGGGGATATCGGAGCA------ACAA-GGGCCCAAGAGATGTAGTATG-TAGGCCCACCGGCGTGTGGG--CATGCTTTAGCACT-CAT-CAACT--TTG-CCCCAGCTATGAGTCAAATAGC-----ATTACTGCCT-----TGTAA--TGGACTTTCT--TTT-C----A-G---T-CAA-AGGC------T-A--TGGGAGAAAA----CCCAGAC---AGAAAA-CCGGAGAGATGGCATCCTTTAGCAGAAAAA-T-GCAATC-ATCTA-AGGG-AAGGACAACC----C-A-----------GA-----GAGAAA-ACCCAATCCACCA--G--TGCGGAGGTTct
gi|8 : AATGGTTAT-G-TGA-GGC-ATAC--AGTGTATGTG-TGT--TGT-CTGT-GTC-T-------GTGCTT-G-------CA-CTCT-CGCT-----TTCAGC-T---C-CACCC-CTTAATACATGTAGCA-G-T--TCGCTGAAAAAAAGGAA--GCAGAATGTGAAA-GTC-T-T-C--CCTGCTAG-G-TA-TAGCCAAT-CCA-A--AG-TT-AGACCTATGTGACCCAGATATAAGGTCCTCCTCGAGGTAGC-AGATGGA-AATTGGG--CA--C-CTAAC--GGCC--C--CAAGGAGAACCGCATGG---TCTTGAGAGACT----A----GGCCCCTAAATGCTAAGCATGCATGGCCCAATGGTATGTGGA--TATGCCCTGGTGTC-TGC-AAACC--TAGTCCCCAGTTATGGGT-AAATAGCAACAAACCATTGTTTTTTTGTGTGGAGTGG----TTG--TGG-C----A-T--GA-CAGTAGGC------T-A--tgtcatggcgtgaacagccccatactgtaaaaa
gi|9 : tTGT-G-TGA-TGC-ATCT--AGTGT--GTA--GA--TAT-G-G-----------------CTT-G------TTATCTCT-CGCT-----TTCAGCCT---C-CACCT-CTGACTA------GTA-G-A----AATGCGAACAGGGAGCTGCCTAGTGTATAA-GTA-T-C-T--CCTGTCAG-AACA-TAGCCTCT-C-C-AC-AACTATAGTCCTATGTA--------ATG----TCTCCATGTGACAAT-ACATGGT-AACTGGG--CA--C-T--GTGAGGCC--C--CAGGCTAAACTACAAGG---
blockSeqs : T A T AG TT AT G GT AG A TTATGAGTA T AATTGAT T T CAAAG TAGCCA AG A CATGTA A AGATGT A CT A G T C G TG TAC A GCACT TA C T ACCCAGATATGGGA A A A AT ATCGC GA GT GG G G A GTA C ATCTTTA G A G C AT G A TA A C AACAAAC TTTTGT AGT ACTTTCTTTTC GTT A T TACTTA CATC C AACT G TCT T C C A A CT A AAAGGC A TACATGTAGAAGG AGAAGA C A A G . CT GG CAATAA TAAA GC GG TCCTGAGA AG G T G . A G G . C C ATT C T A GTAA AC . C A T C A G C T T TAACAGCT ATG C C A C TC . A A T CTGTC AA G GTA T . T T AATAGC T AATCATGGT AA TT CATC AT A G T A T T GG . C CAG TA
blockSeqs : . . . T . . . . CT . CGT . C . . . TAA A A A . TCTTG A . C . . . A G TAT . CAT A . . ACCCAGATATGGGA C . . . CCCT . . . G A A GGA C ATCTA C A A C . . . . A C TA T AT TCGCAGCCTT TA . . . A A . G . T T C C A TC A AAGGG T ACTACA C . C C T . . T CA . . T CACAAGA TT A T T G . T C AACAGCT C . C A C CA . T A G . A T GTG A . A C . C CACATGAGA T A CGCA CA A T . G A C GC . T CAG .
blockSeqs : . . . G . . . . G . CT . T . . . CTC G A . . CTTG C . C . . . . . TAC . CAT T . . GCCCAGATATGGGA A . . . CCCT . . . T A A . A GACTG T A T A . . . . C C TC T AT TCGCCCCGA G . . . A A . G . C C A A T CT . AAGTG A CCA A . A A G . . G G . . A ACTGCC TC T C C . T T AAACTG C . A . A CA . T A G . A T AT A . T T . T CAACACCG T T TCTA AA T A . G T G C . C T .
blockSeqs : . . . T . . . . G . CA . A . . . TC T C . . CTTG A . A . . . . . TAC . CAA T . . ACCCAGATATAAGG A . . . CCTA . . . C A N . C GCGA C G T T . . . . T C AC T GT TAATCGGT G . . . A C . G . T C C T A G . ATAGG A CT C . C A G . . A C . . C GATGA TT T . C . C C A . . C . A . T T . T AACCATGT T T AATG GC G G . G A T G . T . .
blockSeqs : . . . G . . . . G . GT . T . . . CT A A . . CTCG A . A . . . . . AAC . CAT A . . CTCAGTGG C . . . CTA . . . G G G . N ACAA C A C N . . . . T . TC G AT TTTTTGG G . . . A G . . . A T A T G G . ATAGG A CT C . C T C . . T A . . G CACGA AG G C . A C . C CACAGC . A TGCA CA A T . G G . G . .
blockSeqs : . . . A . . . . G . CT . T . . . TC A A . . TTCG A . T . . . . . CT . CAT A . . TCCAATG C . . . TC . . . G A G . C CTA N N N T . . . . T . AT G G CCATGAG G . . . A C . . . . T G A G T . AAGGG G TA A . C C C . . G C . . C GATGA . T
blockSeqs : . . . A . . . . A . T . T . . . T C C . . CTA A . C . . . . . CT . CCA A . . GTT C . . . CT . . . G . A . T N A G T A . . . . . . . T G TTGTGGC G . . . A A . . . . G T . A . . . . CA G . . T
blockSeqs : . . . G . . . . . . . . T . . . AA . . A . . . . . TT . CG A . . ATG T . . . C . . . . . . . T T C . . . . . T CCAGAG T . . . .
blockSeqs : . . C . . . . . GT . AC A . . G A .
blockSeqs : . . . . . . . G . AC . . .
blockSeqs : . . . . . . . CC . .
blockSeqCons : ** TC***** TAC* AAGGG** N* **** NACGA***** CA A** GT* **** NA*
originalCons : NNAAATGACTGT-G-TGA-CGC-GTAC--AGTGT--GTG-TGT--TGT-G-GT-GTC-T-------GTGCTT-G------TCA-CTCT-CGCT-----TTCAGC-T---C-CACCA-CTGGATA------GCA-G-C--TCGCTGCGAAAAGGGAA--GCCGAGTGCGTAA-GTC-T-T-C--CCTGCCAG-N-TA-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TCG--TCG-G----A-G--GT-CAA-AGGC------T-A--TGGGAGANAA----CCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANGAAA-C-GCAATC-GTCTA-AGGG-AAAGAAAACC----C-A-----------GA-----NAGAAA-ACCCGANCCTCNAG-G--TAC-GAGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG----AAAA--A-NACAC---GA--TTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AACAGCT-CAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---C-A-C---A-G--C-AG-TGGAGTN-GCAATCGCGATGA-NNAAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
finalCons : NNAAATGACTGT-G-TGA-CGC-GTAC--AGTGT--GTG-TGT--TGT-G-GT-GTC-T-------GTGCTT-G------TCA-CTCT-CGCT-----TTCAGCTC-----CACCA-CTGGATA------GCA-G-C--TCGCTGCGAAAAGGGAA--GCCGAGTGCGTAA-GTC-T-T-C--CCTGCCAGTAC-A-TAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----GGCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TCG--TCG-G----A-G--GT-CAA-AGGC------T-A--TGGGAGANAA----CCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANGAAA-C-GCAATC-GTCTAAGGG--AAAGAAAACC----C-A-----------GA-----NAGAAA-ACCCGANCCTCNAG-G--TACN-AGGTTGAGCGTAGGGCTAATCC-----CCCCACCTCGG----AAAA--A-NANACGA-----TTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AACAGCT-CAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATTA--CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---C-A-C---A-G--C-AG-TGGAGTN-GCAATCGCGATGANA-AAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
Alignments
lowQualScore : 11 1111111111 1111111 11111 2222222 111111 111111 22222222222222 3333333 111 5555555555555555 1 2222222 111111 333333333333333333 111111 1111 111 1 1111111 333333333333333333 111111 222222 33333 222222 11 222 1 2222 11 222 1 111111111 111 1 22222 111 111 1111 111111 333333333333333333 11 1 111 11
lowQualScore : 5 5 5 55 0 66 66 4 22 555 4 8888888888 4 3333333 4 4 11111 8888888 55 1 777777 4 9999999 3 55 2 3 3 3 6 77 666666 77777 44 3 3 33333333333333 1 4 0 4 66 2222222 66 66 66 1 1 1 444 1 2222222222222222 2 2 2 5 66 5 5 66 5 7 0000000 222222 777 555555555555555555 6666 4 4 222222 7777 1 0000 8 888 7 2 1 5 1 666 0 5555555 1 000000000000000000 333333 5 2 1 1 5 99999 0 3 0 000000 5 77 77 66 1 00000 77 88 1 3 1 999999 1 1 1 88 1 1 111 2 5 2 4444 88 000 1 1 1 1 1 1 0 3 00 4 0 999999999 444 0 0 1 3 8 88 8 1 1 1 00000 0 111 1 888 6 2222 1 2 999999 2 333333333333333333 00 77 8888 999 1 1 6 1 1 3 777 6 7 666 11
lowQualScore : . . . .. . .. .. . .. ... . .......... . ....... . . ..... ....... .. . ...... . ....... . .. . . . . . .. ...... ..... .. . . .............. . . . . .. ....... .. .. .. . . . ... . ................ . . . . .. . . .. . . ....... ...... ... .................. .... . . ...... .... . .... . ... . . . . . ... . ....... . .................. ...... . . . . . ..... . . . ...... . .. .. .. . ..... .. .. . . . ...... . . . .. . . ... . . . .... .. ... . . . . . . . . .. . . ......... ... . . . . . .. . . . . ..... . ... . ... . .... . . ...... . .................. .. .. .... ... . . . . . . ... . . ... ..
lowQualScore : 0 0 0 22 1 99 11 4 22 222 4 3333333333 4 8888888 4 4 11111 3333333 66 7 222222 4 9999999 1 00 8 3 3 3 7 99 000000 22222 88 3 6 77777777777777 0 4 1 4 11 1111111 11 11 11 1 1 4 000 3 1111111111111111 1 9 1 3 11 0 0 99 9 8 9999999 999999 222 444444444444444444 9999 4 4 888888 0000 0 6666 8 888 1 2 0 9 2 444 0 5555555 0 999999999999999999 555555 0 5 0 0 7 99999 1 0 6 777777 7 99 99 77 0 00000 11 88 0 8 0 000000 0 0 0 55 0 0 555 5 5 5 0000 00 000 0 0 0 0 0 0 0 2 55 2 2 555555555 888 0 2 0 2 8 88 0 0 0 4 00000 8 888 0 000 3 1111 9 2 222222 2 555555555555555555 22 77 7777 555 0 0 7 0 0 8 555 7 8 000 00
consensus : NNAAATGACTGT-G-TGA-CGC-GTAC--AGTGT--GTG-TGT--TGT-G-GT-GTC-T-------GTGCTT-G------TCA-CTCT-CGCT-----TTCAGC-T---C-CACCA-CTGGATA------GCA-G-C--TCGCTGCGAAAAGGGAA--GCCGAGTGCGTAA-GTC-T-T-C--CCTGCCAG-T-AC-ATAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----G----GCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TCG--TCG-G----A-G--GT-CAA-AGGC------T-A--TGGGAGANAA----CCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANGAAA-C-GCAATC-GTCTA-AGGG-AAAGAAAACC----C-A-----------GA-----NAGAAA-ACCCGANCCTCNAG-GTAC-GA--GGTTGAGCGTAGGGCTAATCC-----CCCCACCTC-GG--AAAA--A-NANAC-----G-ATTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AACAGCT-CAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---C-A-C---A-G--C-AG-TGGAGTN-GCAATCGCGATGA-NNAAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
Reference ( family-1399 ) : NNAAATGACTGT-G-TGA-CGC-GTAC--AGTGT--GTG-TGT--TGT-G-GT-GTC-T-------GTGCTT-G------TCA-CTCT-CGCT-----TTCAGC-T---C-CACCA-CTGGATA------GCA-G-C--TCGCTGCGAAAAGGGAA--GCCGAGTGCGTAA-GTC-T-T-C--CCTGCCAG-T-AC-ATAGCCTCT-CAN-AC-AG-TA-AGACCTATGTGGCCCAGATATGGGATCCTCCNCGAGGTAAC-AGATGGT-AACTGGG--CA--C-C--GC--GGCC--C--CAGGCAGAACCGCAAGG---TCTCGGAGGA------A----G----GCCCCCAGATGCGTGGCATGCNAGGCCCACCGGCGTGTGGA--CATGCCCTGGTGCC-TGC-AAACC--TAGNCCCCAGCTATGGGTCAAATAGC-----NCCACTGCCT-----TGTGG-GTGG----TCG--TCG-G----A-G--GT-CAA-AGGC------T-A--TGGGAGANAA----CCCAGAC---AGAAAATCCGGACAGATGGAATTCGTNAGCAANGAAA-C-GCAATC-GTCTA-AGGG-AAAGAAAACC----C-A-----------GA-----NAGAAA-ACCCGANCCTCNAG-GTAC-NA--GGTTGAGCGTAGGGCTAATCC-----CCCCACCTC-GG--AAAA--A-NANAC-----G-ATTACGGAAACCNCGAGCAAGTCAAATANTATTTCTCGTCNAAGANTNGAAGAAGANCAGNCATTCAACGCGACCCGAATAGCGGCGTAAAGATGACGCGGACAAGCCGACGGANCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCNAACCCCAAGNTCACNAGGAGGATTGGNACACGGAACGTNA-GAACAATGTATGCCACCGGGA-AACAGCT-CAAATTGCN--AGAGAAATGA-AGAACTACCATCTAGACATNCTAGGAATCAGCGAAAGCAGATGGACAGG-GTCNGGAAAGA-----TCAAAATT-A-CANCTGGT-AGACGAT----CATTTACTCCGGA------AGATCAGACGAC---C-A-C---A-G--C-AG-TGGAGTN-GCAATCGCGATGA-NAAAAGAANCANCAA-AGTCNTTGTAT-G-AA-TGGGCACCCATCGGTAACC--GAATAATAACAGCAT
gi|1 : TGACTGT-C-TGA-TGC-GC-C--AATGT--ATA-TATCTTGT-A-GT-GTC-T-------GTGCTT-G------TCA-CTCT-CGCT-----TGCAGCAT---T-CATCA-CTGGCTA------ACA-G-C--TTGCTGTGAAACGGAAA--GCCGAGAGCGTAA-GTC-T-T-T--CTTGCCAG-TTAC-AT--CCTCT-CAT-AC-AG-TA-ATACCTATGTGGCCCAGATATGATATCCTCCTCGAGGTGAC-AGATGGA-AACTGGG--CA--T-CTAAC--GGCC--C--CAGGCAGAACCACAAGA---TCTCGGAGGA------G----GTTTGGCCCCTAGATGCAAGGCATGCTAGGCCCACCGGTGAGTGGA--CATGCACTGTTGCC-TGC-AAACC--AAACCCCCAGCTATGGGT-GATTAAC-----CCCACTGCCT-----TGTGG-GTGG----CTG--AGG-A----A-A--GC-CTA-GGAA------T-A--TGGGAGACAA----CCCAGAC---AG-AAACCTGGAGAGATGCAATTCGTTAGCATGGTAA-C-GCAATC-ATCT--ACGT-AAGGAATACC----C-A-----------GA-----GAGAAA-ACCCGACCCGCCAGAGTGC-AG--GTTTGA-CGTTGGGCTAA-CA-----ACCCAGCTCTGT--AAAA--A-AGAACTT---G--TTACAGAAACCAGAAGC
gi|1 : GGAACGTTA-GAACAATG-----------------A----CAAGTAGCA--AAAGAAATGA-AAAACTATGGTATCGACATACTAGGTAT-AGTGAGAGTAGATGGA-AGGTATCAGGATAAA-----ACAAAATTCA-AAGCTGAG-ACACGGTGAAACATGTA-----GG------AGAT--GAAGAA---C-ATC---A-AGTC-AG-TGGAGTA-GCAATAATGATGAGTGAAAGAGCCAAGAA-A-TAACTG-AT-G-GATTGGACACCAATTGATAATA--GAATAATAAAAGCAgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctggaacgttagaacaatgacaagtagcaaaagaaatgaaaaactatggtatcgacatactaggtatagtgagagtagatggaaggtatcaggataaaacaaaattcaaagctgagacacggtgaaacatgtaggagatgaagaacatcaagtcagtggagtagcaataatgatgagtgaaagagccaagaaataactgatggattggacaccaattgataatagaataataaaagcaattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|10 : tgactgtctgatgcgccaatgtatatatcttgtagtgtctgtgcttgtcactctcgcttgcagcattcatcactggctaacagcttgctgtgaaacggaaagccgagagcgtaagtctttcttgccagttacatcctctcatacagtaatacctatgtggcccagatatgatatcctcctcgaggtgacagatggaaactgggcatctaacggccccaggcagaaccacaagatctcggaggaggtttggcccctagatgcaaggcatgctaggcccaccggtgagtggacatgcactgttgcctgcaaaccaaacccccagctatgggtgattaaccccactgccttgtgggtggctgaggaaagcctaggaatatgggagacaacccagacagaaacctggagagatgcaattcgttagcatggtaacgcaatcatctacgtaaggaatacccagagagaaaacccgacccgccagagtgcaggtttgacgttgggctaacaacccagctctgtaaaaaagaacttgttacagaaaccagaagcgctgaagaaacccaagataggtgtactgctgaggaatgaaacatgacacatttggggggaagccgaaaggaagcccaaaagccgataggttccatagtagcgccaaaactgaacatgaactgtacataggatgctCTATGGGTCAAATAGT-----TACACTGCCA-----TG-GG-ATGA----CCA----GAG----A-G--GT-AAA-ACGC------T-A--TGGGAGACAA----CCCAGAC---AGAAAGTCAAGACAGATGGAGTTTGCCAGCAAAGATA-CTGCAATC-GTCTA-AAGGCAAAGAAAAGC----C-T-----------GA-----CAGAAA-ACACTAACCTGGAG-GTAT-TA--GG-TGAGCGTAAGGCTAATCG-----CCTCACCTC-GG--AAAA--AGGAGAT-----G-ATTACGGAAACCAGAAGCAAGTattcaaagtataagaagttgacagttatacaagcttatgcaccaacaaatgatgatagagaggaagagaaagagaggtttaccatcaactacaagatagtgtatcaggctgcaataaacatgacatgcttattgtcatgggtgacatgaacgcaaagataggccaagacaac
gi|11 : AAATGACTGT-G--GA-CGC-TTAC--AGTGT--GTGGTGT--TGT-G-GT-GTCGT-------GTGCTT-G------CCC-CTTT-CGCT-----TTCAGC-------AACCAGTTGGATAA-----GCAAG-C--TTGCTGTGAAGAGCGAA--GCAGAATGAGTCA-GTC-T-T-CG-TCTTCCAACT-A--ATAGCCT-T-CAT-AC-AG-TA-AGACCTATGTGACCCAGATATGGGATTCCCAACGAGGTGAC-AGACGGTAAAATGGG--CA--C-CCTGC--GGCCGTC--AAGGCA
gi|12 : TGT--GTC-TAG--TGT-G-GTAGTT-TATGAGTAGTGCTTTG------T-A-CTTTTCGCT-----TTCAAA-T---AACACCA-TTGGATA------GCA-T-C--TA--TGTGAAAAGGAGA--GTCGAGTGCGTAA-GTC-TCT-C--CCTGCCAG-T-AC-ATAGCCTCT-C-G-AT-TG-GA-AAAGCTATGT--CTCAG---TGG----TTCCCCGTAGTA
gi|13 : ttaGTAGATGGATCGG-ATCAGGAAATACTGTCTCAAA------CGGCC----ATACTAT----CGTTTACTCTGGA------AGATCAGATGAC---CAA-C---A-C--CGAGAAGGAGTA-GCGACCATCATGA-ATAAAGAAAGTGCAA-AATCTTTA-ATGG-AG-TGGGGACCCATt
gi|14 : gtgactGGAGCTTGA-GAACAATGTATGCCACTGGGA-AACAGCT-CAAATTGCC--AGAGAAATGA-AGAATTGCCATCTAGACATCCTTGGAATCAGCGAAAGCAGGTGGACAGG-GTCTAGAAAGA-----TCAAAATT-A-CATCTGGTAAGACAAT----CATATA
gi|15 : AT----CATTTACTCCGGA------AGATCAGACAACAATC-A-T---G-G--T-AA-TGAAGTT-GCAATCGCAATGA-CAAAAGAAACATCAA-AGTCATTGTAT-C-AA-TGGGCACCTATCAGTAACC--GAATAATAACAG
gi|16 : tcGAAACGGAGA--GTCGAGTGCGTAA-ATCTT-T-C--CTTGCCAG-T-AT-ACAGCCTCT--AC-ACTAT-CA-AGAC
gi|17 : caaatcgaacgtctctagatcgctaacctacctgtagatCAAGG---TCTCGGAGGAATCTTTA----G----GCCCGGAACTGCATGTGAGTCCAGGCCCACT-GCGTGTAGAATTAT-CCCT-GTACCGTGCAAAACCTATAGATCCCAAC-AAGGGTCAAATtccttcaaactg
gi|18 : AAGGGTATCTCGGAGTAGCG---A----G----GACCCCAGGGGTACAGAACAC-AGGCCCACCAGCGTGTGAA--CACGCCCT
gi|19 : gTGAGCGTTGGGCCAATCC-----CCCTACCTC-GG--AAAAGCA-TACAC-----G-ATTGCGGAAACCTTGAACAAGTCAAATtactctc
gi|2 : AAATGACTGT-G-TGA-CAC-GTAC--AGTGT--GTG-TGTGTTGT-G-GT-GTC-T-------GTGCTT-G------ACA-CTTT-CGTT-----TTCAGC-TAGCCACACCG-CTGGATA------GCA-G-C--TTGCTGTGAAA-TGGAA--GCAGAATGAGTCG-GTC-T-T-C--CCTTCCA----ACTATAGCCTCT-CAT-A---G-TA-AGACCTATGTGACCCAGATATGGGATCCTCCACAAGG-GGC-AGACGGT-AACTGGG--CA--C-CCTGC--GGCC--CGGCCGGCAGAATCACAAGG---TCTAGGAGGA------ATCTAG----GCCCCTAGATGCATGGTAAACCAGGCCAACAGGCGTGTAGA--TATGCCCTGATACC-TGC-AAACC--TAGATCGCAACTATGGATCAAATAGT-----TCCACTGCCT-----TGTGG-ATGG----TTT--TTG-G----ATA--GT-CAA-AGGCTACTTAT-A--TGGAAGTAAA----TCCAGAC---AGAAAATCCGGGTAGATAGAACTCGTCAGCAA--AA----GCTATC-GTCT-------------AACCACTAC-A-----------GA-----AAAAAA-AGCTGGCCCTCTAA-ACTC-AAGGGGCAGAACGTAGGGTTAATCA-----CCCAACCTC-GGTAAAAA--A-AAAATCCTGAG-ATTACAGAAACATCGCTAAAG-CAAACAATCTTTCTCGTCTAAGACTTGAAAAAGAACAGAC---CAACAAAACCCGAA-AGCAGC----AGATGACGCGA--AAGCCGACGGAGCCAAA
gi|2 : ACAAT----TATTTACTCTGGAAATAGCAGCCCAGATGAT---C-A-CATGA-G--A-AG--GGAGTT-GCATTTCTAATGA-AAATAAAATCTAAAA-AGTCTTTAC-T-GCAA-TGGAATCCCATT--TTACCTAGAATTATTACAGCAtataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacacaattatttactctggaaatagcagcccagatgatcacatgagaagggagttgcatttctaatgaaaataaaatctaaaaagtctttactgcaatggaatcccattttacctagaattattacagcaagattcaactctagttttcaaaacaca
gi|20 : aaatgactgtgtgacacgtacagtgtgtgtgtgttgtggtgtctgtgcttgacactttcgttttcagctagccacaccgctggatagcagcttgctgtgaaatggaagcagaatgagtcggtcttcccttccaactatagcctctcatagtaagacctatgtgacccagatatgggatcctccacaaggggcagacggtaactgggcaccctgcggcccggccggcagaatcacaaggtctaggaggaatctaggcccctagatgcatggtaaaccaggccaacaggcgtgtagatatgccctgatacctgcaaacctagatcgcaactatggatcaaatagttccactgccttgtggatggtttttggatagtcaaaggctacttatatggaagtaaatccagacagaaaatccgggtagatagaactcgtcagcaaaagctatcgtctaaccactacagaaaaaaaagctggccctctaaactcaaggggcagaacgtagggttaatcacccaacctcggtaaaaaaaaaatcctgagattacagaaacatcgctaaagcaaacaatctttctcgtctaagacttgaaaaagaacagaccaacaaaacccgaaagcagcagatgacgcgaaagccgacggagccaaatataccaccaaaataggcacctggaatgtaagaacactactagcactccagagtggaaaatgtgcaaatggacagatacaagatcgaaatcttatgattaagtgaggttagatggaatacatcaggcatgtcgtgtgttaactccgctcacGTGCGTTA-ATC-T-TGC--CCTGCCAG-T-AC-AAAGCCTCT--AC-AC-TG-Tagattcaactctagttttcaaaacaca
gi|3 : ctagcctacttgtagAAATGACTGT-GATG--CGCAGTACTTAGTGT--G-G-TTT--TGT-G-GT-GTC-A-------ATGCTT-AAATTGATCA-------GCTCAAAGTTCAGA-T---C-CACCT-CTGGCTA------GCA-G-AGATGTCTGCGAAAACAGAA--GCAGAGTGTGTAG-GTC-T-T-C--CCTACCAG-G-A---TAGCCTCT-CAA-AC-AG-TA-AGACCTGTGTGGCCCAGATATGGGATCCCCCATGAGGTGAC-AGATGGT-AACTGGG--GA--T-C--GC-----T--C--CAGTTAAAACCACAGGG---TTT------------------G----GCCCCCAGATGCGTGATATACAAGACCCACCGGTGAGTGGA--CATGCCCTGGTGCC-CGC-AAACC--AAACCCCCAGCTAGAGGT-AAATAGT-----ACCACTGCCT-----TGTGG-GTAG----TAA--TCG-GT---A-G--ATACAA-AGGC------T-A--CGGGAGCAAA----CCCA-AC---AGAAAACCCGGACAGATGGAGTTCGTAAGCAGCGTAATC-GCAATC-GTCTA-AGGG-AATGAAAACC----CCA-----------AA-----CAGAAGCAC---AACCCCGAG-GTAC-AA--GGTTGATCGTAGGGCCAATCC-----CCCTACCTC-GG--AAAA--A-CACACAA---G-ATTACGGAAACCTTGATCAAGTCAAATAGTATT------CAAAGAGTGG--GAAGACCAGCCATTCAACGCGACCCAAATAGAGGCGTAAAGATGACGTGGACAAGTCAA---ACCCAAAGAGGAGCTTGTACACAGAAAGAGTCGTTGGCCAACCCCAAAGTTACAAGAAAGATTGGTACATGGAACGTGA-GAACAATGTATGTCACCGGGATAACAGCT-CAAATTGCC--AGAGAAATGA-AGAATTACCATCTAGACATCCTAGGAATCAACGAAAGCAGGCGGACAGG-GCCTGGAAAGA-----TCAAAATT-A-CATCTGGTGAGACAAT----CATATACTCTGGC------AGAACAGATGAC---C-A-C---A-G--C-AG-TGGCGTA-GCTATAATGATGA-GCAACGAAGCAGCAATAG-CACTAGAT-G-AA-TGGGCACC-------AAAC--GATTAGTAGCATCAT
gi|4 : tcTAGT-----TCCACTGTAT------GTGG-ATGA----CCA--TGA-G----A-G--GT-CAA-AGGT------T-A--TGGGAGACA------CCAGAA---AGAAAATCCGGACAGATGGAGTTCGTCAGCAAAGATA-CTGCAATC-GTCTA-AGTG-AGAGAAAACC----C-T-----------GA-----CAGAAA-ACACGAACCTGGAG-GTAC-TA--GGTTGAGCGAAAGGCTAATCCA----CCTCACCTC-GA--AAAA--A-GAGAT-----G-ATCACAGAAACCAGAAGCAAGCCAAATTTTAT
gi|4 : GCAAACCCCAAGTTCACCAGGAGAATTGAAACACGGAACGTCCCGTACCATGTATGCTACTGGAA-AA--ACTGCACAGTGCATGAAAGAAAAGGCGGAGCTATCACTTAGATATATTAGGA-TAAGTGAATGCAGATGGAC-GG-GTACGGGCAAA-----TAAACACC-AACACCGGAT-AGATCAT----CATTTACTCCGGA------AGATCAGACAAC---A-A-CC--ATG--T-AA-TGGAGTTTGCAATTGCAATGA-CAAAAGAAACATCAA-AGTCGTTGTAT-G-AT-AGGGCACCTATCAGTAACC--GAATAATAACAGCAaagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccagcaaaccccaagttcaccaggagaattgaaacacggaacgtcccgtaccatgtatgctactggaaaaactgcacagtgcatgaaagaaaaggcggagctatcacttagatatattaggataagtgaatgcagatggacgggtacgggcaaataaacaccaacaccggatagatcatcatttactccggaagatcagacaacaaccatgtaatggagtttgcaattgcaatgacaaaagaaacatcaaagtcgttgtatgatagggcacctatcagtaaccgaataataacagcaatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|5 : tagttccactgtatgtggatgaccatgagaggtcaaaggttatgggagacaccagaaagaaaatccggacagatggagttcgtcagcaaagatactgcaatcgtctaagtgagagaaaaccctgacagaaaacacgaacctggaggtactaggttgagcgaaaggctaatccacctcacctcgaaaaaagagatgatcacagaaaccagaagcaagccaaattttataagaaggggggggggggcaaggacacggaagttcacatgcgaaggatactccaATGACTGTTG-TGATCGC-TTAC--AGTGT--GTG-TGT--TGTAG-GT-GT--T-------GTGTTT-G------TCA-CTCT-CGCT-----TTTAGC-T-----CACCA-TTG---A------GCA-GTC--TTGCTGCCAA----GAA------AGAGCTTAAGGTC-T-T-CTGCCTGCCAA-T--T-ATAG-CTCT-CAT-GC-AG-TA-TGACTAATGTGG-------------TTCTCCCCGAGGTAAC---ATGGT-AATTGGT--TAATCGC--AC--GGGC--C--AAGCTAACTCTACGGGG---TCTCGGAGGAGACT--G----G----GCCCCCAGATGCATGACATGCTAGGCCCACCGGCGTGTGGA--TATGACCCGATGCT-TGC-AAACC--TAGTCCTCAGCTATGGGT-AAATAGC---------CGGTCA-----GATGA-G-GG----TCG---CA-GCCTTA-GTTGG-CAA----C------TCATCTGGGAGAGAAAACTCTCA------ATAAA--CCGGGTAGATCTGACTCAAAAGACATGGAA-G-GCAGCCAATCTATAGG---AAGGAGACC----T-ACATGTAGAAGGGA-----AAAAAA-ACCTGGTCCTCCAG-GTAG-GG--GGTTGAGCATGAGGCTAATTCAATAATCTCATCTC-AT--AAAA--A-CAACT-----GCCTTACAAAAACatattctagtcaaagtacataaaaacaacaatagttcaagtttactcactaaccaatgatgcagacgatggagagaaagaaatatttacgagcagctgcagaacgtcatagattaggcaccaagatatgggacaatgctgataataggtgacctaatgcaaaagttggaaaacagctggaaggagagaatg
gi|6 : gtgAATTACTGT-G-TGA-TGC-GTAC--AGTGT--GTG-TGT--TGT-A-GT-GCG-T-------GTGCTT-G------TCA-CTCT-CGCT-----TTCAGC-C---T-TACCA-TTGGATA------GCA-G-C--TCGCTGC-AAAAGGTAA---CTAAATATGTAA-GTC-T-T-C--C-------------ATAACCTCT-CAT-GC-AG-TA-AGACCAATGTGGTT-----------TCCTCCCCGAGGTAACAAAATGGT-AACTGGAATCA----C--AC--GGTT--C--CAG------NNNNNNNN---NNNNNNNNNN------N----N----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCGTGTGGA--TATGCCCTGATGCC-TGC-AAGCC--TAGTCCCCAGCTATGGGT-AAATAGC---------CGGCCA-----GATGA-G-GG----TCGCCCCG-A----G-G--GT-CGC-AGCC------T----TGGTTGGCAA----CTCA-ACTCTAAATAAACCGGTTAGATCTGACTCGTGAGCCATGGAA-G-GCAGCCAATCTATAGG---AAGGGAACC----T-A-----------GAAGAAGAAAAAA-ACCTGGCCCTCtg
gi|7 : tA--GTCGAGTGCGTAA-ATC-T-TAC--TCTGCCAG-T-AC-AAAGTATCTGCACTAC----TA-AGACTCCT----TCCA---ATG----CCTCCCCGTGGCAAT-GCATGTC-AACTGGG--GT--C-TA-GC--A-CC--C--CAGGCTAAATTGGAAGGGGATATCGGAGCA------ACAA-G----GGCCCAAGAGATGTAGTATG-TAGGCCCACCGGCGTGTGGG--CATGCTTTAGCACT-CAT-CAACT--TTG-CCCCAGCTATGAGTCAAATAGC-----ATTACTGCCT-----TGTAA--TGGACTTTCT--TTT-C----A-G---T-CAA-AGGC------T-A--TGGGAGAAAA----CCCAGAC---AGAAAA-CCGGAGAGATGGCATCCTTTAGCAGAAAAA-T-GCAATC-ATCTA-AGGG-AAGGACAACC----C-A-----------GA-----GAGAAA-ACCCAATCCACCA--GTGCGGA--GGTTct
gi|8 : AATGGTTAT-G-TGA-GGC-ATAC--AGTGTATGTG-TGT--TGT-CTGT-GTC-T-------GTGCTT-G-------CA-CTCT-CGCT-----TTCAGC-T---C-CACCC-CTTAATACATGTAGCA-G-T--TCGCTGAAAAAAAGGAA--GCAGAATGTGAAA-GTC-T-T-C--CCTGCTAG---GT-ATAGCCAAT-CCA-A--AG-TT-AGACCTATGTGACCCAGATATAAGGTCCTCCTCGAGGTAGC-AGATGGA-AATTGGG--CA--C-CTAAC--GGCC--C--CAAGGAGAACCGCATGG---TCTTGAGAGACT----A----G----GCCCCTAAATGCTAAGCATGCATGGCCCAATGGTATGTGGA--TATGCCCTGGTGTC-TGC-AAACC--TAGTCCCCAGTTATGGGT-AAATAGCAACAAACCATTGTTTTTTTGTGTGGAGTGG----TTG--TGG-C----A-T--GA-CAGTAGGC------T-A--tgtcatggcgtgaacagccccatactgtaaaaa
gi|9 : tTGT-G-TGA-TGC-ATCT--AGTGT--GTA--GA--TAT-G-G-----------------CTT-G------TTATCTCT-CGCT-----TTCAGCCT---C-CACCT-CTGACTA------GTA-G-A----AATGCGAACAGGGAGCTGCCTAGTGTATAA-GTA-T-C-T--CCTGTCAG-A-AC-ATAGCCTCT-C-C-AC-AACTATAGTCCTATGTA--------ATG----TCTCCATGTGACAAT-ACATGGT-AACTGGG--CA--C-T--GTGAGGCC--C--CAGGCTAAACTACAAGG---