lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 11 555555555555555555555555555555555 111 11 1111 111111 444444444444444444444 111 22222 111111111111111111111111111111111111111111 222222 999999999999999999999 1
lowQualScore : 6 9 1 4 4 99 888 3 4 6 4 5 4 999999999999999999999999999999999 9 0 222 66 11 9999 0000 888 0 7 666666 555555555555555555555 33 333 6 55555 222222222222222222222222222222222222222222 5 3 88 888888 5 4 555555555555555555555 5 5 3 7
lowQualScore : . . . . . .. ... . . . . . . ................................. . . ... .. .. .... .... ... . . ...... ..................... .. ... . ..... .......................................... . . .. ...... . . ..................... . . . .
lowQualScore : 6 8 9 4 4 00 777 9 0 1 0 4 0 888888888888888888888888888888888 8 9 222 11 99 4444 6666 888 1 6 000000 888888888888888888888 22 333 7 00000 999999999999999999999999999999999999999999 7 0 11 999999 7 0 000000000000000000000 7 0 9 0
consensus : AGGGACAGGCCTGCCCTGAAGGACTTC-AAAGCCAAAATT-CATGCCAAAATC--GGTG-CTNAA-ATGGG-GAAAACG------CCG-TTT---AN-GTC-A--N-CTTTGAAGGTTAA---TT--TC-AGC----ATTG----CAAA---TAATAAATTTT----AGGTTCAAA-------NTGTAAAT---CCGAAAAATTCGAACA-ATGAAA-----AAAAACCCATACACG-TTN-ACG--AA-AT-C--AACG----AAANTT-GA-TATAACAATGTGACTTTTTCCGG-AAAATTGTTC-TCCCNTATAGG-------T--------TT-GTTACCCTGAATTGATCCTT
Reference ( gi|7 ) : AGGGACAAGCCTGCCATGAAGGACTTC-AAAGCCAAAATT-CATTCCAAAATC--GATG-CTAAA-ATAAG-GAAAACA------ACA-TCT---AA-GTC-A--T-CTGTGATGGTTAA---TT--TA-AGC----ATTG----CAAA---TAATACATTTC----AGATTCAAA-------TTGTAAAT---CTAAAAAATTCAAACAAATGAAA-----AAAAACCCAAACCCAATTC-ACA--AA-ATCCCAAACG----AAAGCT-GA-TATAACAATGTGACTTTTCCCCG-AAAATTGTTC-TCTCCTCTAGG-------TA-------TT-GTTGCCTTGAAATGATCCTT
gi|13 : AGCGAAAGGCCTGCTCTGATAGACTTC-AAGGCCAAAACT-GAAGCTAAAATT--GGTG-CTAAG-AGAGA-GAAAGCA------TTG-TGC---AC-GTC-A--A-CTGTGACAGTTAA---TT--TT-AGC----AT
gi|2 : ataaaaatatcgtaaattcgtctAAGGACA-GCCTGCCA-----GGCT---AAA---AAGATT-CATGTCAAA----------CCA-------G-TAAAAC-----------TCTGTAAA-GTT---------TGAAGATTAA---TT--TC-AGC----ATTG----CAA-----------------------TCAA-----------TCAAT---TTGAAAAATTCAAACA
gi|4 : gtataaaaaaatgttgaaaaaggcgagttacacacaaaaaaatggttttaaaagtgtggcttgaggtgattcaatcatgataaaaaaaaaaaccaggttgtcaaaaattaagtttcttattatttgtaggtcttatgtgaatttcaacctcaagacaaggatgctcctaaaaaaaaacctattgtaattatttataagatgatgcacctatcaatatatcatgtcattcGGGACAGACCTGCCCTAAAGGACGTC-AAGACCAAA-TT-CATGCCAAAATC--GGTG-CTAAA-ATAGG-AAAAACATTGTATACA-TGT---AG-GCC-A--A-CT-TGTTGGTAAA---TT--TC-AGC----ATCA----CAGA---TAATGAATGTT----AGATTCAAA-------CTGTAAAT---TTGAAAAATGCAAGCAcacatggcaaagcaatgaaagtagatttacaatgtcttgtggaaaattgttctccgttataggtttttacccttaattgatccttt
gi|8 : gtattcaaacaatgacaaaaggaagctaagcacacagtaacagcggtgtttcgtgtggcttactgagatacaccaccttcaagaactaaagatatgaatatgaaccaggttgtccaaaatcagattcccttatttgtaggcttttgtgattttttgtgaaaattctggggtaaattgttctgaagattgcaacctatcaaaatataataatttcattttGGGACCAGGCTGCCCTGAAGGACTTT-A--GCCAAAACT-CATGCCAAATTT--GGTG-CTCAA-ATAGG-GAAAACA-------CAGTTT---GT-GTC-A--A-GTTTGAAGGTTAA---TT--TC-AGC----ATTG----CAAA---TAATAAATTTT----AGATCCAAA-------TTG
gi|6 : atttttgtagctttttcatgaattcaacctcagaactggggtgtcctaatggaaattgttctttagattgcaattcatcaaaatatcctaatttcattatGGGGCAATCCTGGTTTGAAGAACATC-AAAGCCAAAATT-TATGTCAAAACA--GGTG-C
gi|10 : ctttctcaattttgttggtttcgaccccaaggtataggagtgcccctataggaatcctgcatgctacaaaatactagtatgggggaaaccccaataatGGACAGGCTTGCCATAAGGGACC-C-AAAGCCAGAAT---GT--CAAAATC--AATA-TT-TA-ATGGA-TAAAATG------CTG-TTT---AC-ATC-A--G-CTTTAAGAGTGAAG--TT--TA-A-C----ATTG----TAGA---CAATatgctgaatattgtggatattgaattggttcaaaattaaaatatgaaaaattcaaatctatgtgcaacagaaaataaccgcaaaaacatacatgtataattaatttccggaaattgctcttccctacaggtctttcttttgttac
gi|3 : attctttaAGGCTTGTCTTGAAATACTTC-AAAGCCAAATTT-TATGTCAAAAT---GGTT-CTTAA-ATGGG-GAAAATG------CTG-TTC---AG-ATCAA--T-TTG-GAAAGTTCA---TTTCTACAGTCTAAATTGAGTCTAAA---TAATGAATTGT----AGGTTCAAA-------ATGAAAATAGGCCAAAAAtgatcatagactaacgaagtctgcagaaaataatttgtaaaat
gi|5 : aaatgctgaaaaagaaatgatatagggattcaaaacatatcgaaaataaatattgaatatactgccattgatgctcctgattgagcaattctaagcatacataacatccgtgtaaatatgaagtaggttttcaaaaacagtttctttatctttgttgggttttcgtgaatctacacccaaggcaggggtattattgtaaattaaccatcagcaccaacaaaatagtgttTGCCTTGAAGGTCTTC-AAAGCTAAAATT-CCTGTCAAAATC--GGTG-ATTAG-ACGGG-GAAACTG------CTA-TTT---AG-G-C-A--TATTTTGATTGTTAA---CT--TT-AAC----ATTG----TAGG---TAATACATTAT----AAGCTCAAA-------ATG-----------AAAAATT------AAT--AG-----AATAACC-------------ATG--AA-ATCT---------------T-GA-TATAATAATGTG--------CC-------TGTTC-TCCCCTATAGGCCTTTTCTT-------TT-GTTACCCTGAATTGATCCc
gi|9 : aggtcttcaaaaacaggccccctaatttggtattggattttcataaatttttacctcaaggtaatactattcaaattgtttttaagattgcaacctttaaaattctagagagcagtcaGAGGGACTTCAAAAGCC--AATTCCAGT-CAAAATC--AATG-ATTAA-AGGGG-GAA
gi|15 : gtataaatatattaaacaggttctcaaaaacacgtcccctaattcgtggacttggactgtaaattgtttttaagattgtaacctatcaaaatatcaaaagcagtttgtctgCCTAAATCTTGGTGGCTAAA-ATAGG-GAAAAAC------ACG-GTT---AAGGTC-AATT-TTG-GAAGGTGAAAATTT--TA-GGC----ATTG----CAAAAATTAA-ATATTTT----AGGTggttgatttttacattgtaaatttgataaattaca
gi|17 : ggattcaaccaagagaAAATATAAGTGAAAGCA------CTG-TTT---AT-TCC-A--A-GTTTGAAGGTCAA---TT--TC-AGC----CTCG----CAAA---TAATAAATTTTAAGAAGATTTGAA-------CTG-AAA
gi|1 : caCACTTC----AAATTTAAAACAGAGATAATAAAT---C--ATAGATTCGAA---ATGAAAGTATGAAAAATCCATATACA-TGT-ATG--AA-TTACTAAAGG----A--GCTTGA-TATAACAGTATGATTTTTTTCCGGAAAATTGTTC-TCTTCTACAGG-------TCTTTTCCTTT-GTTACCCCGACTTGATCCTT
gi|11 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaagagacgggtctgtcttgaagAACATATGAAA-----AAATTCCTATACATG-TTCGACAGGAG-AT----AACGGAATAAATTT-TA-TGTTACAATACATTTTTTTCCGG-AAAATTGTTC-TCCCATGT--G-------TG-------TTGGTTTCTTTG
gi|2 : gaattgagctggaacaactttcgaaatg-----AAAAATTCAAACACACATG-GCA--AA-GC----AATG----AAAGTA-GA-TTTA-CAATGT--CTTGTG---G-AAAATTGTTC-TCCGTTATAGG-------T--------TT--TTACCCTTAATTGATCCTTtta
gi|16 : gtataaaaaaatgttgaaaaaggcgagttacacacaaaaaaatggttttaaaagtgtggcttgaggtgattcaatcatgataaaaaaaaaaaccaggttgtcaaaaattaagtttcttattatttgtaggtcttatgtgaatttcaacctcaagacaaggatgctcctaaaaaaaaacctattgtaattatttataagatgatgcacctatcaatatatcatgtcattcaaggacagcctgccaggctaaaaagattcatgtcaaaccagtaaaactctgtaaagtttgaagattaatttcagcattgcaatcaatcaatttgAATTA-ACA--AATGTAC--AACA----GAAAAT-AACTA-AAGAATGTGACTTTTCCCAG-AAAATTGTTCTTCTCTT---------------------TT-GTTACCCTGAATTGATCCTTt
gi|14 : tgaaaA--AA-ATTATAAAAG----AAACTT-GA-TATAA---TGTCACTCTTTTCGA-AAAATTCTTC-TCTCGTAAATGTTT----TT-------TT-GTTGCCCTGAATTGATCTTT
gi|22 : tcagtataatgaaaaatgatatatacgtacgaatg-TATAACAATGTGACTTTTTC------AATGGTAT-TTTCTT---------------------TT-GTTACCCTGAATTGATCC
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): AAGTGCTGAAAACCTAGACCCAGAGTGAGGCGGATTCGAACCACCGCAAAAAGCAATCACAGCATATACTGCTAGCGGTGCAGCTGACTGGGTTATTCTGAGCACAAAATGTCTGACCAGGTTTTCAAAAA
Unaligned ( gi|18 ): GCTACACTAACTTCAAAAACCGGGGTATAAATTCATTTATGAACCAGGTTGTCAAAACCAGGCTCCCT
Unaligned ( gi|19 ): TTTTTCCGGAAAAAGTGTTCTTAACTGTAGGTCTTATCTTTTGTTACCCAGAATTGATCCTTT
Unaligned ( gi|20 ): ACATGGCAATGTGATTGTTCTCCCCTACATGTATCAACTTTTGTTACCCTGAATTGACC
Unaligned ( gi|21 ): ACAATCGTGATTTTTCACATTGGTAAATTTTCTTTTGTTACCCTGAATTGATCCTT
Unaligned ( gi|23 ): GTAAATTGTTCTAAAGATTGCGACCTATTACAATATCACAATTTCATTTAGGGTC
Unaligned ( gi|24 ): GCAGATTCAAACATGGCAATAAATAATCACAGCATATCTGCCACCAGTACAGCT
Unaligned ( gi|25 ): GTTCTCCTCTGTAGGTCTTTCCTTTCGTTATCCTGATTTATTGCCTTAT
Alignments
lowQualScore : 111111111111111 22222222222 99999999999999999999999999999999999999999999999999999999999999999999999999999 5555555555555555555555555
lowQualScore : 4 4 1 0 6 3 33 3 55 3 2 22 666666666666666 2 0 999 3 1 55 666 3 7777 7777 55 55 22 0 2 55555555555 444 33333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 4 333 55 6666 2 3 44 8888888888888888888888888 7777
lowQualScore : . . . . . . .. . .. . . .. ............... . . ... . . .. ... . .... .... .. .. .. . . ........... ... ............................................................................. . . . ... .. .... . . .. ......................... ....
lowQualScore : 4 0 6 7 4 3 77 6 00 6 4 77 000000000000000 3 4 444 6 6 00 444 6 1111 7777 00 55 88 8 8 88888888888 999 33333333333333333333333333333333333333333333333333333333333333333333333333333 1 7 0 999 44 9999 2 3 66 4444444444444444444444444 1111
consensus : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTTTAGGTTCAAAATGTAAAT---CTGAAAAATTCGAA-C-A-ATG---AAA-----AAAAACC-ATACAC-GTTC-AC--GAA--------AT---C---A-AC-G----AAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
Reference ( family-1371 ) : AGGGA-C-AGGCCTGCCCTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCCGT-----T-TANGTCA-NCTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTTTAGGTTCAAANTGTAAAT---CCGAAAAATTCGAA-C-A-ATG---AAA-----AAAAACCCATACAC-GTTN-AC--GAA--------AT---C---A-AC-G----AAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCNTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
gi|1 : AGAGA-C-GGGTCTGTCTTGAAGCACTTCAAA-TTTAAAA
gi|1 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaTAAAT---C--ATAGATTCGAA-----ATG---AAAGTATGAAAAATCCATATAC-ATGT-AT--GAATT------AC---T---A-AA-G----GAGCTTGATATAACAGT-ATGATTTTTTTCC---GGAAAA-T--TGTTCTCTTCTACAGGTCTTTTCCT--------TT----GTTACCCCGACTTGATCCTTcagagataataaatcatagattcgaaatgaaagtatgaaaaatccatatacatgtatgaattactaaaggagcttgatataacagtatgatttttttccggaaaattgttctcttctacaggtcttttcctttgttaccccgacttgatcctt
gi|10 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaagagacgggtctgtcttgaagcacttcaaatttaaaacagagataaGGA-C-AGGCTTGCCATAAGGGAC-CCAAA-GCCAGA----ATG-TCAAAATC--AATA-TTT-AATGGATAAAA-TGCTGT-----T-TACATCA-GCTTTA-AGAGTGAA--GTT---TAA-C----ATTG----TAGA--CAAT
gi|11 : attctttaAAAT--GAA-C-ATATG---AAA-----AAATTCCTATACAT-GTTCGACAGGAG--------AT-------A-AC-GGAATAAATTTTATGTTACAAT-ACATTTTTT-TCC---GGAAAA-T--TGTTCTCCCATGTGTG--------T--------TG----GTTtgatcatagactaacgaagtctgcagaaaataatttgtaaaat
gi|13 : gaattgagctggaacaactttcgAGCGA-A-AGGCCTGCTCTGATAGACTTCAAG-GCCAAAACTGAAG-CTAAAATT--GGTG-CTAAGAGAGAGAAAG-CATTGT-----G-CACGTCA-ACTGTG-ACAGTTAA--TTT---TAG-C----ATtctttgtta
gi|14 : ataaaaatatcgtaaattcgtctA-T-A-ATG---AAA-----AATGAT--ATATAC-GT---AC--GAATGAAAATTAT---A---A-AA-G----AAACTTGATATAA---T-GTCACTCTT-TTC---GAAAAA-T--TCTTCTCTCGTAAATG--------T--------TTTTTTGTTGCCCTGAATTGATCTTT
gi|15 : tcagtGGA-TTCAA---CCAAGA-----GACCTAAATCTTGGTGGCTAAAATAGGGAAAAACACGGT-----T-AAGGTCA-ATTTTGGAAGGTGAAAATTT---TAGGC----ATTG----CAAA--AATTAAATATTTTAGGT
gi|16 : TTA-AC---AA--------ATGTAC---A-ACAG----AAAATAACTA-AAGAAT-GTGACTTTT-CCC---AGAAAA-T--TGTTCTTCTCT-------------T--------TT----GTTACCCTGAATTGATCCTT
gi|17 : tgaaaaaGAAAG-CACTGT-----T-TATTCCA-AGTTTG-AAGGTCAA--TTT---CAG-C----CTCG----CAAA--TAATAA--ATTTTAAG---AAGATTTGAA----CTGAAA
gi|19 : caaaatataagtTTTT-TCC---GGAAAAAG--TGTTCTTAACTGTAGG--------TCTTATCTTTT----GTTACCCAGAATTGATCCTT
gi|2 : AAGGA-C-AG-CCTGCC----AGG-CT--AAA----AAGATTCATG-TCAAA-CC--AGT-------------AAAA-CTC------------TGTAA-AGTTTG-AAGATTAA--TTT---CAG-C----ATTG----CAAT--CAATCA--ATTT-----------------------GAAAAATTCAAA-C-A--------------------------CAC-AT-G-GC---AA--------AG---C---A-AT-G----AAAGTAGATTTA-CAAT-GT--CTTGT-------GGAAAA-T--TGTTCTCCGTTATAGG--------T--------TT-----TTACCCTTAATTGATCCTTt
gi|20 : gtataaaaaaatgttgaaaaaggcgagttacacacaaaaaaatggttttaaaagtgtggcttgaggtgattcaatcatgataaaaaaaaaaaccaggttgtcaaaaattaagtttcttattatttgtaggtcttatgtgaatttcaacctcaagacaaggatgctcctaaaaaaaaacctattgtaattatttataagatgatgcacctatcaatatatcatgtcattcA-T--TGTTCTCCCCTACATG--------TATCAACTTTT----GTTACCCTGAATTGACCt
gi|21 : acatggcaatgtgACAATCGTGATTTTT-CACATTGGTAAA-T--T-TTCT------------------T--------TT----GTTACCCTGAATTGATCCTT
gi|22 : TATAACAAT-GTGACTTTT-TC--------AA-TGGTATTTTCT----------------T--------TT----GTTACCCTGAATTGATCC
gi|3 : -AGGCTTGTCTTGAAATACTTCAAA-GCCAAATTTTATG-TCAAAAT---GGTT-CTTAAATGGGGAAAA-TGCTGT-----T-CAGATCA-ATTTGG-AAAGTTCA--TTTCTACAG-TCTAAATTGAGTCTAAA--TAATGA--ATTGTAGGTTCAAAATGAAAATAGGCCAAAAAc
gi|4 : aaatgctgaaaaagaaatgatatagggattcaaaacatatcgaaaataaatattgaatatactgccattgatgctcctgattgagcaattctaagcatacataacatccgtgtaaatatgaagtaggttttcaaaaacagtttctttatctttgttgggttttcgtgaatctacacccaaggcaggggtattattgtaaattaaccatcagcaccaacaaaatagtgttGGGA-C-AGACCTGCCCTAAAGGACGTCAAG-ACCAAA-TTCATG-CCAAAATC--GGTG-CTAAAATAGGAAAAA-CATTGTATACATGTAGGCCA-ACTT-G-TTGGTAAA--TTT---CAG-C----ATCA----CAGA--TAATGA--ATGTTAGATTCAAACTGTAAAT---TTGAAAAATGCAAG-C-A-c
gi|5 : gtattcaaacaatgacaaaaggaagctaagcacacagtaacagcggtgtttcgtgtggcttactgagatacaccaccttcaagaactaaagatatgaatatgaaccaggttgtccaaaatcagattcccttatttgtaggcttttgtgattttttgtgaaaattctggggtaaattgttctgaagattgcaacctatcaaaatataataatttcattttAGAGAGC-AGTCATGCCTTGAAGGTCTTCAAA-GCTAAAATTCCTG-TCAAAATC--GGTG-ATTAGACGGGGAAAC-TGCTAT-----T-TAGG-CATATTTTG-ATTGTTAA--CTT---TAA-C----ATTG----TAGG--TAATAC--ATTATAAGCTCAAAAT-----------GAAAAATT-------A-AT-----AG-----AATAACC-------------AT--GAA--------AT---C-----------------TTGATATAATAAT-GTG--------CC-------------TGTTCTCCCCTATAGGCCTTTTCTT--------TT----GTTACCCTGAATTGATCC
gi|6 : aggtcttcaaaaacaggccccctaatttggtattggattttcataaatttttacctcaaggtaatactattcaaattgtttttaagattgcaacctttaaaattctGGGG-C-AATCCTGGTTTGAAGAACATCAAA-GCCAAAATTTATG-TCAAAACA--GGTG-C
gi|6 : ctttctcaattttgttggtttcgaccccaaggtataggagtgcccctataggaatcctgcatgctacaaaatactagtatgggggaaaccccaataat----ATTG----TGGA--TATTGA--ATT---GGTTCAAAATTAAAAT---ATGAAAAATTCAAATC-T-ATGTGCAAC-----AGAAA---ATA-AC----C-GC--AAA--------AA---C---ATAC-A---------TG-TATAAT-----TAA---TT-TCC---GG-AAA-T--TGCTCTTCCCTACAGGTCTTTCT-T--------TT----GTTACatgctgaatattgtggatattgaattggttcaaaattaaaatatgaaaaattcaaatctatgtgcaacagaaaataaccgcaaaaacatacatgtataattaatttccggaaattgctcttccctacaggtctttcttttgttac
gi|7 : ctttctcaattttgttggtttcgaccccaaggtataggagtgcccctataggaatcctgcatgctacaaaatactagtatgggggaaaccccaataatggggcaatcctggtttgaagaacatcaaagccaaaatttatgtcaaaacaggtgcatgctgaatAGGGA-C-AAGCCTGCCATGAAGGACTTCAAA-GCCAAAATTCATT-CCAAAATC--GATG-CTAAAATAAGGAAAA-CAACAT-----C-TAAGTCA-TCTGTG-ATGGTTAA--TTT---AAG-C----ATTG----CAAA--TAATAC--ATTTCAGATTCAAATTGTAAAT---CTAAAAAATTCAAA-CAA-ATG---AAA-----AAAAACCCAAACCCAATTC-AC--AAA--------AT---CCCAA-AC-G----AAAGCTGATATAACAAT-GTGACTTTT-CCC---CGAAAA-T--TGTTCTCTCCTCTAGG--------TA-------TT----GTTGCCTTGAAATGATCCTT
gi|8 : GGGA-CCAGGC-TGCCCTGAAGGACTTTA---GCCAAAACTCATG-CCAAATTT--GGTG-CTCAAATAGGGAAAA-CACAGT-----T-TGTGTCA-AGTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTTTAGATCCAAATTG
gi|9 : atttttgtagctttttcatgaattcaacctcagaactggggtgtcctaatggaaattgttctttagattgcaattcatcaaaatatcctaatttcattatTGTCTGGAGGGACTTCAAAAGCCAA--TTCCAG-TCAAAATC--AATG-ATTAAA-GGGG-------------------------------G-AAGGTTGA--TTT---TTA-C----ATTG----TAAATTTGATAA--ATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGTGCTGAAAACCTAGACCCAGAGTGAGGCGGATTCGAACCACCGCAAAAAGCAATCACAGCATATACTGCTAGCGGTGCAGCTGACTGGGTTATTCTGAGCACAAAATGTCTGACCAGGTTTTCAAAAA
Unaligned ( gi|18 ): GCTACACTAACTTCAAAAACCGGGGTATAAATTCATTTATGAACCAGGTTGTCAAAACCAGGCTCCCT
Unaligned ( gi|23 ): GTAAATTGTTCTAAAGATTGCGACCTATTACAATATCACAATTTCATTTAGGGTC
Unaligned ( gi|24 ): GCAGATTCAAACATGGCAATAAATAATCACAGCATATCTGCCACCAGTACAGCT
Unaligned ( gi|25 ): GTTCTCCTCTGTAGGTCTTTCCTTTCGTTATCCTGATTTATTGCCTTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 1111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333 5555555555555555555555
lowQualScore : 4 4 1 0 4 3 0 3 55 3 3 1 555 5555555555 0 3 6 33 3 44 3 555 3 6666 77777 44 44 7 0 0000000 22 66 7777777777777777777777777777777777777777777777777777777777777777777777777777777 4 0 0 4 333 55 6666 2 3 44 3 7777777777777777777777 7777
lowQualScore : . . . . . . . . .. . . . ... .......... . . . .. . .. . ... . .... ..... .. .. . . ....... .. .. ............................................................................... . . . . ... .. .... . . .. . ...................... ....
lowQualScore : 4 0 6 7 3 3 1 6 00 6 5 2 888 2222222222 8 1 5 44 1 22 1 444 1 5555 99999 22 22 6 1 6666666 88 11 5555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 7 0 999 44 9999 2 3 66 1 0000000000000000000000 1111
consensus : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTT-GA-AGGTT--AAT-TT---CA-GC----ATTG----CAAA--TAATAA--ATTNTAGGTTCAAA---ATGTAAATCTG--AAAAATTCAAA-C-A-ATG---AAAAAAAA-CC-ATACAC-GT-C-AC--GAA--------AT---C---A-A----C-G----AAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
Reference ( family-1371 ) : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTT-GA-AGGTT--AAT-TT---CA-GC----ATTG----CAAA--TAATAA--ATTTTAGGTTCAAA---ATGTAAATCTG--AAAAATTCGAA-C-A-ATG---AAAAAAAA-CC-ATACAC-GTTC-AC--GAA--------AT---C---A-A----C-G----AAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
gi|1 : AGAGA-C-GGGTCTGTCTTGAAGCACTTCAAA-TTTAAAA
gi|1 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaAGA--TAATAA--ATCATAGATTCGAA---ATGAAAGTATG--AAAAAT-------------------------CC-ATATAC-ATGT-AT--GAATT------AC---T---A-A----A-G----GAGCTTGATATAACAGT-ATGATTTTTTTCC---GGAAAA-T--TGTTCTCTTCTACAGGTCTTTTCCT--------TT----GTTACCCCGACTTGATCCTTcagagataataaatcatagattcgaaatgaaagtatgaaaaatccatatacatgtatgaattactaaaggagcttgatataacagtatgatttttttccggaaaattgttctcttctacaggtcttttcctttgttaccccgacttgatcctt
gi|10 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaagagacgggtctgtcttgaagcacttcaaatttaaaacagGGA-C-AGGCTTGCCATAAGGGACC-CAAA-GCCAGAAT----G-TCAAAATC--AATA-TTTAA-TGGATAAAA-TGCTGT-----T-TACATCA-GCTTT-AA-GAGTG--AAG-TT---TA-AC----ATTG----TAGA--CAATTG--ATCATAGACT---A---ACG-AAGTCTGCAGAAAAT
gi|11 : attctttaAAAT--GAA-C-ATATG---AAAAAATT-CCTATACAT-GTTCGACAGGAG--------AT-------A-A----C-GGAATAAATTTTATGTTACAAT-ACATTTTTT-TCC---GGAAAA-T--TGTTCTCCCATGTGTG--------T--------TG----GTTaatttgtaaaat
gi|13 : gaattgagctggaacaactttcgAGCGA-A-AGGCCTGCTCTGATAGACTTCAAG-GCCAAAACTGAAG-CTAAAATT--GGTG-CTAAGAGAGAGAAAG-CATTGT-----G-CACGTCA-ACTGT-GA-CAGTT--AAT-TT---TA-GC----ATtctttgtta
gi|14 : ataaaaatatcgtaaattcgtctA-T-A-ATG---AAAAATGA-T--ATATAC-GT---AC--GAATGAAAATTAT---A---A-A----A-G----AAACTTGATATAA---T-GTCACTCTT-TTC---GAAAAA-T--TCTTCTCTCGTAAATG--------T--------TTTTTTGTTGCCCTGAATTGATCTTT
gi|15 : tcagtGGA-TTCAA---CCAAGA-----GACCTAAATCTTGGTGGCTAAAATAGGGAAAAACACGGT-----T-AAGGTCA-ATTTTGGA-AGGTGAAAAT-TT---TAGGC----ATTG----CAAA--AATTAAATATTTTAGGT
gi|16 : AA--------ATGTAC---A-A----CAG----AAAATAACTA-AAGAAT-GTGACTTTT-CCC---AGAAAA-T--TGTTCTTCTCT-------------T--------TT----GTTACCCTGAATTGATCCTT
gi|17 : tgaaaaattaacGAAAG-CACTGT-----T-TATTCCA-AGTTT-GA-AGGTC--AAT-TT---CA-GC----CTCG----CAAA--TAATAA--ATTTTAAG---AAG---ATTTGAA-CTG--AAA
gi|19 : caaaatataagtTTTT-TCC---GGAAAAAG--TGTTCTTAACTGTAGG--------TCTTATCTTTT----GTTACCCAGAATTGATCCTT
gi|2 : AAGGA-C-AG-CCTGCC----AGG-CT--AAA----AAGATTCATG-TCAAA-CC--AGT-------------AAAA-CTCTGT--------A----A-AGTTT-GA-AGATT--AAT-TT---CA-GC----ATTG----CAA--------------------TCAA-------TCAATTTG--AAAAATTCAAA-C-A--------------------CACAT-G----GC---AA--------AG---C---A-A----T-G----AAAGTAGATTTA-CAAT-GT--CTTGT-------GGAAAA-T--TGTTCTCCGTTATAGG--------T--------TT-----TTACCCTTAATTGATCCTTt
gi|20 : gtataaaaaaatgttgaaaaaggcgagttacacacaaaaaaatggttttaaaagtgtggcttgaggtgattcaatcatgataaaaaaaaaaaccaggttgtcaaaaattaagtttcttattatttgtaggtcttatgtgaatttcaacctcaagacaaggatgctcctaaaaaaaaacctattgtaattatttataagatgatgcacctatcaatatatcatgtcattcA-T--TGTTCTCCCCTACATG--------TATCAACTTTT----GTTACCCTGAATTGACCt
gi|21 : acatggcaatgtgACAATCGTGATTTTT-CACATTGGTAAA-T--T-TTCT------------------T--------TT----GTTACCCTGAATTGATCCTT
gi|22 : TATAACAAT-GTGACTTTT-TC--------AA-TGGTATTTTCT----------------T--------TT----GTTACCCTGAATTGATCC
gi|3 : -AGGCTTGTCTTGAAATACTTCAAA-GCCAAATTTTATG-TCAAAAT---GGTT-CTTAAATGGGGAAAA-TGCTGT-----T-CAGATCA-ATTTG-GA-AAGTT--CAT-TTCTACA-GTCTAAATTGAGTCTAAA--TAATGA--ATTGTAGGTTCAAA---ATGAAAATc
gi|4 : aaatgctgaaaaagaaatgatatagggattcaaaacatatcgaaaataaatattgaatatactgccattgatgctcctgattgagcaattctaagcatacataacatccgtgtaaatatgaagtaggttttcaaaaacagtttctttatctttgttgggttttcgtgaatctacacccaaggcaggggtattattgtaaattaaccatcagcaccaacaaaatagtgttGGGA-C-AGACCTGCCCTAAAGGACGTCAAG-ACCAAA-TTCATG-CCAAAATC--GGTG-CTAAAATAGGAAAAA-CATTGTATACATGTAGGCCA-ACTT--GT-TGGTA--AAT-TT---CA-GC----ATCA----CAGA--TAATGA--ATGTTAGATTCAAA---CTGTAAATTTG--AAAAATGCAAG-C-A-aggccaaaaac
gi|5 : gtattcaaacaatgacaaaaggaagctaagcacacagtaacagcggtgtttcgtgtggcttactgagatacaccaccttcaagaactaaagatatgaatatgaaccaggttgtccaaaatcagattcccttatttgtaggcttttgtgattttttgtgaaaattctggggtaaattgttctgaagattgcaacctatcaaaatataataatttcattttAGAGAGC-AGTCATGCCTTGAAGGTCTTCAAA-GCTAAAATTCCTG-TCAAAATC--GGTG-ATTAGACGGGGAAAC-TGCTAT-----T-TAGG-CATATTTT-GA-TTGTT--AAC-TT---TA-AC----ATTG----TAGG--TAATAC--ATTATAAGCTCAAA---A--------TG--AAAAATT-------A-AT-----AGAATAA-CC-AT--------------GAA--------AT---C---------------------TTGATATAATAAT-GTG--------CC-------------TGTTCTCCCCTATAGGCCTTTTCTT--------TT----GTTACCCTGAATTGATCC
gi|6 : aggtcttcaaaaacaggccccctaatttggtattggattttcataaatttttacctcaaggtaatactattcaaattgtttttaagattgcaacctttaaaattctGGGG-C-AATCCTGGTTTGAAGAACATCAAA-GCCAAAATTTATG-TCAAAACA--GGTG-C----ATGCTGAA------TAT-----T----GTGG-ATATT-GA-A--TT--GG--TT---CA-AA----ATTA-----AAA--T-ATGA--A----AAATTCAAATCTATGTGCAACAG---AAAAT---AA-C----CG---CAAAAA----C-ATACAT-GT---AT----A--------AT---T---A-ATTTCC-G----GAAATTG
gi|6 : ctttctcaattttgttggtttcgaccccaaggtataggagtgcccctataggaatcctgcatgctacaaaatactagtatgggggaaaccccaataatT-----T-TATGTCA-A-----AACAGGTG--CATGCT---GA-AT----ATTG----TGGA--TATTGA--ATT---GGTTCAAA---ATTAAAATATG--AAAAATTCAAATC-T-ATGTGCAACAGAAA----ATA-AC----C-GC--AAA--------AA---C---ATA----C-A---------TG-TATAAT-----TAA---TT-TCC---GG-AAA-T--TGCTCTTCCCTACAGGTCTTTCT-T--------TT----GTTACctcttccctacaggtctttcttttgttac
gi|7 : ctttctcaattttgttggtttcgaccccaaggtataggagtgcccctataggaatcctgcatgctacaaaatactagtatgggggaaaccccaataatggggcaatcctggtttgaagaacatcaaagccaaaaAGGGA-C-AAGCCTGCCATGAAGGACTTCAAA-GCCAAAATTCATT-CCAAAATC--GATG-CTAAAATAAGGAAAA-CAACAT-----C-TAAGTCA-TCTGT-GA-TGGTT--AAT-TT---AA-GC----ATTG----CAAA--TAATAC--ATTTCAGATTCAAA---TTGTAAATCTA--AAAAATTCAAA-CAA-ATG---AAAAAAAACCC-AAACCCAATTC-AC--AAA--------AT---CCCAA-A----C-G----AAAGCTGATATAACAAT-GTGACTTTT-CCC---CGAAAA-T--TGTTCTCTCCTCTAGG--------TA-------TT----GTTGCCTTGAAATGATCCTT
gi|8 : GGGA-CCAGGC-TGCCCTGAAGGACTTTA---GCCAAAACTCATG-CCAAATTT--GGTG-CTCAAATAGGGAAAA-CACAGT-----T-TGTGTCA-AGTTT-GA-AGGTT--AAT-TT---CA-GC----ATTG----CAAA--TAATAA--ATTTTAGATCCAAA---TTG
gi|9 : atttttgtagctttttcatgaattcaacctcagaactggggtgtcctaatggaaattgttctttagattgcaattcatcaaaatatcctaatttcattatTGTCTGGAGGGACTTCAAAAGCCAA--TTCCAG-TCAAAATC--AATG-ATTAAA-GGGG--------------------------------GA-AGGTT--GAT-TT---TT-AC----ATTG----TAAATTTGATAA--ATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGTGCTGAAAACCTAGACCCAGAGTGAGGCGGATTCGAACCACCGCAAAAAGCAATCACAGCATATACTGCTAGCGGTGCAGCTGACTGGGTTATTCTGAGCACAAAATGTCTGACCAGGTTTTCAAAAA
Unaligned ( gi|18 ): GCTACACTAACTTCAAAAACCGGGGTATAAATTCATTTATGAACCAGGTTGTCAAAACCAGGCTCCCT
Unaligned ( gi|23 ): GTAAATTGTTCTAAAGATTGCGACCTATTACAATATCACAATTTCATTTAGGGTC
Unaligned ( gi|24 ): GCAGATTCAAACATGGCAATAAATAATCACAGCATATCTGCCACCAGTACAGCT
Unaligned ( gi|25 ): GTTCTCCTCTGTAGGTCTTTCCTTTCGTTATCCTGATTTATTGCCTTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111 1111111 2222222222222222222222222222222222222222222222222222222222222222222222 5555555555555555555555
lowQualScore : 4 4 1 0 4 3 0 3 55 3 3 1 555 999999999999 3 3 3 11 44 555 3 7777 88888 44 44 3 11 0000000 22 66 7777777777777777777777777777777777777777777777777777777777777777777777 2 1 1 4 44 55 6666 2 3 44 3 7777777777777777777777 7777
lowQualScore : . . . . . . . . .. . . . ... ............ . . . .. .. ... . .... ..... .. .. . .. ....... .. .. ...................................................................... . . . . .. .. .... . . .. . ...................... ....
lowQualScore : 4 0 6 7 3 3 1 6 00 6 5 2 888 111111111111 3 7 3 00 66 888 3 1111 11111 66 66 3 44 2222222 22 99 4444444444444444444444444444444444444444444444444444444444444444444444 8 0 6 0 99 44 9999 2 3 66 1 0000000000000000000000 1111
consensus : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTNTAGATTCAAA---ATGTAAATCTG--AAAAATTCAAAC-A-ATGAAAAAA-A-CC-ATACACG--T-----ACGAA--------AT---C---AAC-G----AAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
Reference ( family-1371 ) : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTNTAGGTTCAAA---ATGTAAATCTG--AAAAATTCAAAC-A-ATGAAAAAAAA-CC-ATACACG--T----CACGAA--------AT---C---AAC-G----AAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
gi|1 : AGAGA-C-GGGTCTGTCTTGAAGCACTTCAAA-TTTAAAA
gi|1 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaAGA--TAATAA--ATCATAGATTCGAA---ATGAAAGTATG--AAAAATCCA-------------------T-ATACATG--T-----ATGAATT------AC---T---AAA-G----GAGCTTGATATAACAGT-ATGATTTTTTTCC---GGAAAA-T--TGTTCTCTTCTACAGGTCTTTTCCT--------TT----GTTACCCCGACTTGATCCTTcagagataataaatcatagattcgaaatgaaagtatgaaaaatccatatacatgtatgaattactaaaggagcttgatataacagtatgatttttttccggaaaattgttctcttctacaggtcttttcctttgttaccccgacttgatcctt
gi|10 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaagagacgggtctgtcttgaagcacttcaaatttaaaacagGGA-C-AGGCTTGCCATAAGGGACC-CAAA-GCCAGAAT----G-TCAAAATC--AATA-TTTAA-TGGATAAAA-TGCTGT-----T-TACATCA-GCTTTA-AGAGTGAA--GTT---TAA-C----ATTG----TAGA--CAATTG--ATCATAGACT---A---ACG-AAGTCTGCAGAAAAT
gi|11 : attctttaAAC-ATATGAAAAAATT-CCTATACATG--TTCGACAGGAG--------AT-------AAC-GGAATAAATTTTATGTTACAAT-ACATTTTTT-TCC---GGAAAA-T--TGTTCTCCCATGTGTG--------T--------TG----GTTaatttgtaaaat
gi|13 : gaattgagctggaacaactttcgaaatgAGCGA-A-AGGCCTGCTCTGATAGACTTCAAG-GCCAAAACTGAAG-CTAAAATT--GGTG-CTAAGAGAGAGAAAG-CATTGT-----G-CACGTCA-ACTGTG-ACAGTTAA--TTT---TAG-C----ATtctttgtta
gi|14 : ataaaaatatcgtaaattcgtctAT-A-ATGAAAAATGA-T--ATATACG--T-----ACGAATGAAAATTAT---A---AAA-G----AAACTTGATATAA---T-GTCACTCTT-TTC---GAAAAA-T--TCTTCTCTCGTAAATG--------T--------TTTTTTGTTGCCCTGAATTGATCTTT
gi|15 : tcagtGGA-TTCAA---CCAAGA-----GACCTAAATCTTGGTGGCTAAAATAGGGAAAAACACGGT-----T-AAGGTCA-ATTTTGGAAGGTGAAAATTT---TAGGC----ATTG----CAAA--AATTAAATATTTTAGGT
gi|16 : AA--------ATGTAC---AACAG----AAAATAACTA-AAGAAT-GTGACTTTT-CCC---AGAAAA-T--TGTTCTTCTCT-------------T--------TT----GTTACCCTGAATTGATCCTT
gi|17 : tgaaaaattaacGAAAG-CACTGT-----T-TATTCCA-AGTTTG-AAGGTCAA--TTT---CAG-C----CTCG----CAAA--TAATAA--ATTTTAAG---AAG---ATTTGAA-CTG--AAA
gi|19 : caaaatataagtTTTT-TCC---GGAAAAAG--TGTTCTTAACTGTAGG--------TCTTATCTTTT----GTTACCCAGAATTGATCCTT
gi|2 : AAGGA-C-AG-CCTGCC----AGG-CT--AAA----AAGATTCATG-TCAAA-CC--AGT-------------AAAA-CTCTGT--------A----A-AGTTTG-AAGATTAA--TTT---CAG-C----ATTG----CAA--------------------TCAA-------TCAATTTG--AAAAATTCAAAC-A-------------------CACA--T----GGC-AA--------AG---C---AAT-G----AAAGTAGATTTA-CAAT-GT--CTTGT-------GGAAAA-T--TGTTCTCCGTTATAGG--------T--------TT-----TTACCCTTAATTGATCCTTt
gi|20 : gtataaaaaaatgttgaaaaaggcgagttacacacaaaaaaatggttttaaaagtgtggcttgaggtgattcaatcatgataaaaaaaaaaaccaggttgtcaaaaattaagtttcttattatttgtaggtcttatgtgaatttcaacctcaagacaaggatgctcctaaaaaaaaacctattgtaattatttataagatgatgcacctatcaatatatcatgtcattcA-T--TGTTCTCCCCTACATG--------TATCAACTTTT----GTTACCCTGAATTGACCt
gi|21 : acatggcaatgtgACAATCGTGATTTTT-CACATTGGTAAA-T--T-TTCT------------------T--------TT----GTTACCCTGAATTGATCCTT
gi|22 : TATAACAAT-GTGACTTTT-TC--------AA-TGGTATTTTCT----------------T--------TT----GTTACCCTGAATTGATCC
gi|3 : -AGGCTTGTCTTGAAATACTTCAAA-GCCAAATTTTATG-TCAAAAT---GGTT-CTTAAATGGGGAAAA-TGCTGT-----T-CAGATCA-ATTTGG-AAAGTTCA--TTTCTACAG-TCTAAATTGAGTCTAAA--TAATGA--ATTGTAGGTTCAAA---ATGAAAATc
gi|4 : aaatgctgaaaaagaaatgatatagggattcaaaacatatcgaaaataaatattgaatatactgccattgatgctcctgattgagcaattctaagcatacataacatccgtgtaaatatgaagtaggttttcaaaaacagtttctttatctttgttgggttttcgtgaatctacacccaaggcaggggtattattgtaaattaaccatcagcaccaacaaaatagtgttGGGA-C-AGACCTGCCCTAAAGGACGTCAAG-ACCAAA-TTCATG-CCAAAATC--GGTG-CTAAAATAGGAAAAA-CATTGTATACATGTAGGCCA-ACTT-G-TTGGTAAA--TTT---CAG-C----ATCA----CAGA--TAATGA--ATGTTAGATTCAAA---CTGTAAATTTG--AAAAATGCAAGC-A-aggccaaaaac
gi|5 : gtattcaaacaatgacaaaaggaagctaagcacacagtaacagcggtgtttcgtgtggcttactgagatacaccaccttcaagaactaaagatatgaatatgaaccaggttgtccaaaatcagattcccttatttgtaggcttttgtgattttttgtgaaaattctggggtaaattgttctgaagattgcaacctatcaaaatataataatttcattttAGAGAGC-AGTCATGCCTTGAAGGTCTTCAAA-GCTAAAATTCCTG-TCAAAATC--GGTG-ATTAGACGGGGAAAC-TGCTAT-----T-TAGG-CATATTTTG-ATTGTTAA--CTT---TAA-C----ATTG----TAGG--TAATAC--ATTATAAGCTCAAA---A--------TG--AAAAATT------A-AT--AGAATAA-CC-AT---------------GAA--------AT---C----------------TTGATATAATAAT-GTG--------CC-------------TGTTCTCCCCTATAGGCCTTTTCTT--------TT----GTTACCCTGAATTGATCC
gi|6 : aggtcttcaaaaacaggccccctaatttggtattggattttcataaatttttacctcaaggtaatactattcaaattgtttttaagattgcaacctttaaaattctGGGG-C-AATCCTGGTTTGAAGAACATCAAA-GCCAAAATTTATG-TCAAAACA--GGTG-C----ATGCTGAA------TAT-----T----GTGG-ATATTG-AA--TTGG---TT---CAA-A----ATTA-----AAA--T-ATGA--A----AAATTCAAATCTATGTGCAACAG---AAAAT---AAC----CGCAAAAA----C-ATACATG--T------------------AT------------------AATTAAT-----------------T-TCC---GG-AAA-T--TGCTCTTCCCTACAGGTCTTTCT-T--------TT----GTTAC
gi|7 : ctttctcaattttgttggtttcgaccccaaggtataggagtgcccctataggaatcctgcatgctacaaaatactagtatgggggaaaccccaataatAGGGA-C-AAGCCTGCCATGAAGGACTTCAAA-GCCAAAATTCATT-CCAAAATC--GATG-CTAAAATAAGGAAAA-CAACAT-----C-TAAGTCA-TCTGTG-ATGGTTAA--TTT---AAG-C----ATTG----CAAA--TAATAC--ATTTCAGATTCAAA---TTGTAAATCTA--AAAAATTCAAACAA-ATGAAAAAAAACCC-AAACCCAATT----CACAAA--------AT---CCCAAAC-G----AAAGCTGATATAACAAT-GTGACTTTT-CCC---CGAAAA-T--TGTTCTCTCCTCTAGG--------TA-------TT----GTTGCCTTGAAATGATCCTT
gi|8 : GGGA-CCAGGC-TGCCCTGAAGGACTTTA---GCCAAAACTCATG-CCAAATTT--GGTG-CTCAAATAGGGAAAA-CACAGT-----T-TGTGTCA-AGTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTTTAGATCCAAA---TTG
gi|9 : atttttgtagctttttcatgaattcaacctcagaactggggtgtcctaatggaaattgttctttagattgcaattcatcaaaatatcctaatttcattatTGTCTGGAGGGACTTCAAAAGCCAA--TTCCAG-TCAAAATC--AATG-ATTAAA-GGGG-------------------------------G-AAGGTTGA--TTT---TTA-C----ATTG----TAAATTTGATAA--ATTACA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGTGCTGAAAACCTAGACCCAGAGTGAGGCGGATTCGAACCACCGCAAAAAGCAATCACAGCATATACTGCTAGCGGTGCAGCTGACTGGGTTATTCTGAGCACAAAATGTCTGACCAGGTTTTCAAAAA
Unaligned ( gi|18 ): GCTACACTAACTTCAAAAACCGGGGTATAAATTCATTTATGAACCAGGTTGTCAAAACCAGGCTCCCT
Unaligned ( gi|23 ): GTAAATTGTTCTAAAGATTGCGACCTATTACAATATCACAATTTCATTTAGGGTC
Unaligned ( gi|24 ): GCAGATTCAAACATGGCAATAAATAATCACAGCATATCTGCCACCAGTACAGCT
Unaligned ( gi|25 ): GTTCTCCTCTGTAGGTCTTTCCTTTCGTTATCCTGATTTATTGCCTTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111 1111111 0000000000000000000000000000000000000000000000000000000000000000000000 5555555555555555555555
lowQualScore : 4 4 1 0 4 3 0 3 55 3 3 1 555 999999999999 3 3 3 11 44 555 3 7777 88888 44 44 3 0 0000000 22 66 0000000000000000000000000000000000000000000000000000000000000000000000 4 0 1 4 44 55 6666 2 3 44 3 7777777777777777777777 7777
lowQualScore : . . . . . . . . .. . . . ... ............ . . . .. .. ... . .... ..... .. .. . . ....... .. .. ...................................................................... . . . . .. .. .... . . .. . ...................... ....
lowQualScore : 4 0 6 7 3 3 1 6 00 6 5 2 888 111111111111 3 7 3 00 66 888 3 1111 11111 66 66 3 4 2222222 22 99 5555555555555555555555555555555555555555555555555555555555555555555555 5 5 6 0 99 44 9999 2 3 66 1 0000000000000000000000 1111
consensus : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTNTAGATTCAAA---ATGTAAATCTG--AAAAATTCAAAC-A-ATGAAAAA--A--A--CCATACACG---T---AC--GAA--------ATC---AA-G----AAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
Reference ( family-1371 ) : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTNTAGATTCAAA---ATGTAAATCTG--AAAAATTCAAAC-A-ATGAAAAA--A--A--CCATACACG---T---AC--GAA--------ATC---AACG----AAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
gi|1 : AGAGA-C-GGGTCTGTCTTGAAGCACTTCAAA-TTTAAAA
gi|1 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaAGA--TAATAA--ATCATAGATTCGAA---ATGAAAGTATG--AAAAATCCA-----------------------TATACATG---T---AT--GAATT------ACT---AAAG----GAGCTTGATATAACAGT-ATGATTTTTTTCC---GGAAAA-T--TGTTCTCTTCTACAGGTCTTTTCCT--------TT----GTTACCCCGACTTGATCCTTcagagataataaatcatagattcgaaatgaaagtatgaaaaatccatatacatgtatgaattactaaaggagcttgatataacagtatgatttttttccggaaaattgttctcttctacaggtcttttcctttgttaccccgacttgatcctt
gi|10 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaagagacgggtctgtcttgaagcacttcaaatttaaaacagGGA-C-AGGCTTGCCATAAGGGACC-CAAA-GCCAGAAT----G-TCAAAATC--AATA-TTTAA-TGGATAAAA-TGCTGT-----T-TACATCA-GCTTTA-AGAGTGAA--GTT---TAA-C----ATTG----TAGA--CAATTG--ATCATAGACT---A---ACG-AAGTCTGCAGAAAAT
gi|11 : attctttaAAC-ATATGAAAAA--ATTC--CTATACATG---TTCGACAGGAG--------AT----AACGGAATAAATTTTATGTTACAAT-ACATTTTTT-TCC---GGAAAA-T--TGTTCTCCCATGTGTG--------T--------TG----GTTaatttgtaaaat
gi|13 : gaattgagctggaacaactttcgaaatgAGCGA-A-AGGCCTGCTCTGATAGACTTCAAG-GCCAAAACTGAAG-CTAAAATT--GGTG-CTAAGAGAGAGAAAG-CATTGT-----G-CACGTCA-ACTGTG-ACAGTTAA--TTT---TAG-C----ATtctttgtta
gi|14 : ataaaaatatcgtaaattcgtctAT-A-ATGAAAAA--T--G--ATATATACG---T---AC--GAATGAAAATTATA---AAAG----AAACTTGATATAA---T-GTCACTCTT-TTC---GAAAAA-T--TCTTCTCTCGTAAATG--------T--------TTTTTTGTTGCCCTGAATTGATCTTT
gi|15 : tcagtGGA-TTCAA---CCAAGA-----GACCTAAATCTTGGTGGCTAAAATAGGGAAAAACACGGT-----T-AAGGTCA-ATTTTGGAAGGTGAAAATTT---TAGGC----ATTG----CAAA--AATTAAATATTTTAGGT
gi|16 : TGAAAAATTA--A--CAA---ATG---T---AC--AA-----------C---A--G----AAAATAACTA-AAGAAT-GTGACTTTT-CCC---AGAAAA-T--TGTTCTTCTCT-------------T--------TT----GTTACCCTGAATTGATCCTT
gi|17 : GAAAG-CACTGT-----T-TATTCCA-AGTTTG-AAGGTCAA--TTT---CAG-C----CTCG----CAAA--TAATAA--ATTTTAAG---AAG---ATTTGAA-CTG--AAA
gi|19 : caaaatataagtTTTT-TCC---GGAAAAAG--TGTTCTTAACTGTAGG--------TCTTATCTTTT----GTTACCCAGAATTGATCCTT
gi|2 : AAGGA-C-AG-CCTGCC----AGG-CT--AAA----AAGATTCATG-TCAAA-CC--AGT-------------AAAA-CTCTGT--------A----A-AGTTTG-AAGATTAA--TTT---CAG-C----ATTG----CAA--------------------TCAA-------TCAATTTG--AAAAATTCAAAC-A----------------------CACA---T---GG--CAA--------AGC---AATG----AAAGTAGATTTA-CAAT-GT--CTTGT-------GGAAAA-T--TGTTCTCCGTTATAGG--------T--------TT-----TTACCCTTAATTGATCCTTt
gi|20 : gtataaaaaaatgttgaaaaaggcgagttacacacaaaaaaatggttttaaaagtgtggcttgaggtgattcaatcatgataaaaaaaaaaaccaggttgtcaaaaattaagtttcttattatttgtaggtcttatgtgaatttcaacctcaagacaaggatgctcctaaaaaaaaacctattgtaattatttataagatgatgcacctatcaatatatcatgtcattcA-T--TGTTCTCCCCTACATG--------TATCAACTTTT----GTTACCCTGAATTGACCt
gi|21 : acatggcaatgtgACAATCGTGATTTTT-CACATTGGTAAA-T--T-TTCT------------------T--------TT----GTTACCCTGAATTGATCCTT
gi|22 : TATAACAAT-GTGACTTTT-TC--------AA-TGGTATTTTCT----------------T--------TT----GTTACCCTGAATTGATCC
gi|3 : -AGGCTTGTCTTGAAATACTTCAAA-GCCAAATTTTATG-TCAAAAT---GGTT-CTTAAATGGGGAAAA-TGCTGT-----T-CAGATCA-ATTTGG-AAAGTTCA--TTTCTACAG-TCTAAATTGAGTCTAAA--TAATGA--ATTGTAGGTTCAAA---ATGAAAATc
gi|4 : aaatgctgaaaaagaaatgatatagggattcaaaacatatcgaaaataaatattgaatatactgccattgatgctcctgattgagcaattctaagcatacataacatccgtgtaaatatgaagtaggttttcaaaaacagtttctttatctttgttgggttttcgtgaatctacacccaaggcaggggtattattgtaaattaaccatcagcaccaacaaaatagtgttGGGA-C-AGACCTGCCCTAAAGGACGTCAAG-ACCAAA-TTCATG-CCAAAATC--GGTG-CTAAAATAGGAAAAA-CATTGTATACATGTAGGCCA-ACTT-G-TTGGTAAA--TTT---CAG-C----ATCA----CAGA--TAATGA--ATGTTAGATTCAAA---CTGTAAATTTG--AAAAATGCAAGC-A-aggccaaaaac
gi|5 : gtattcaaacaatgacaaaaggaagctaagcacacagtaacagcggtgtttcgtgtggcttactgagatacaccaccttcaagaactaaagatatgaatatgaaccaggttgtccaaaatcagattcccttatttgtaggcttttgtgattttttgtgaaaattctggggtaaattgttctgaagattgcaacctatcaaaatataataatttcattttAGAGAGC-AGTCATGCCTTGAAGGTCTTCAAA-GCTAAAATTCCTG-TCAAAATC--GGTG-ATTAGACGGGGAAAC-TGCTAT-----T-TAGG-CATATTTTG-ATTGTTAA--CTT---TAA-C----ATTG----TAGG--TAATAC--ATTATAAGCTCAAA---A--------TG--AAAAATT------A-AT-AGAAT--A--A--CCAT----------------GAA--------ATC---------------TTGATATAATAAT-GTG--------CC-------------TGTTCTCCCCTATAGGCCTTTTCTT--------TT----GTTACCCTGAATTGATCC
gi|6 : aggtcttcaaaaacaggccccctaatttggtattggattttcataaatttttacctcaaggtaatactattcaaattgtttttaagattgcaacctttaaaattctGGGG-C-AATCCTGGTTTGAAGAACATCAAA-GCCAAAATTTATG-TCAAAACA--GGTG-C----ATGCTGAA------TAT-----T----GTGG-ATATTG-AA--TTGG---TT---CAA-A----ATTA-----AAA--T-ATGA--A----AAATTCAAATCTATGTGCAACAG---AAAAT---AAC----CGCAAAA--A------CATACATG---T---AT----A--------ATT---AA-------------------------------TT-TCC---GG-AAA-T--TGCTCTTCCCTACAGGTCTTTCT-T--------TT----GTTAC
gi|7 : ctttctcaattttgttggtttcgaccccaaggtataggagtgcccctataggaatcctgcatgctacaaaatactagtatgggggaaaccccaataatAGGGA-C-AAGCCTGCCATGAAGGACTTCAAA-GCCAAAATTCATT-CCAAAATC--GATG-CTAAAATAAGGAAAA-CAACAT-----C-TAAGTCA-TCTGTG-ATGGTTAA--TTT---AAG-C----ATTG----CAAA--TAATAC--ATTTCAGATTCAAA---TTGTAAATCTA--AAAAATTCAAACAA-ATGAAAAA--A--AACCCAAACCCAATTC---AC--AAA--------ATCCCAAACG----AAAGCTGATATAACAAT-GTGACTTTT-CCC---CGAAAA-T--TGTTCTCTCCTCTAGG--------TA-------TT----GTTGCCTTGAAATGATCCTT
gi|8 : GGGA-CCAGGC-TGCCCTGAAGGACTTTA---GCCAAAACTCATG-CCAAATTT--GGTG-CTCAAATAGGGAAAA-CACAGT-----T-TGTGTCA-AGTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTTTAGATCCAAA---TTG
gi|9 : atttttgtagctttttcatgaattcaacctcagaactggggtgtcctaatggaaattgttctttagattgcaattcatcaaaatatcctaatttcattatTGTCTGGAGGGACTTCAAAAGCCAA--TTCCAG-TCAAAATC--AATG-ATTAAA-GGGG-------------------------------G-AAGGTTGA--TTT---TTA-C----ATTG----TAAATTTGATAA--ATTACA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGTGCTGAAAACCTAGACCCAGAGTGAGGCGGATTCGAACCACCGCAAAAAGCAATCACAGCATATACTGCTAGCGGTGCAGCTGACTGGGTTATTCTGAGCACAAAATGTCTGACCAGGTTTTCAAAAA
Unaligned ( gi|18 ): GCTACACTAACTTCAAAAACCGGGGTATAAATTCATTTATGAACCAGGTTGTCAAAACCAGGCTCCCT
Unaligned ( gi|23 ): GTAAATTGTTCTAAAGATTGCGACCTATTACAATATCACAATTTCATTTAGGGTC
Unaligned ( gi|24 ): GCAGATTCAAACATGGCAATAAATAATCACAGCATATCTGCCACCAGTACAGCT
Unaligned ( gi|25 ): GTTCTCCTCTGTAGGTCTTTCCTTTCGTTATCCTGATTTATTGCCTTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111 1111111 1111111111111111111111111111111111111111111111111111111111111111111111 5555555555555555555555
lowQualScore : 4 4 1 0 4 3 0 3 55 3 3 1 555 999999999999 3 3 3 11 44 555 3 7777 88888 44 44 3 0 0000000 22 66 1111111111111111111111111111111111111111111111111111111111111111111111 4 0 1 4 44 55 6666 2 3 44 3 7777777777777777777777 7777
lowQualScore : . . . . . . . . .. . . . ... ............ . . . .. .. ... . .... ..... .. .. . . ....... .. .. ...................................................................... . . . . .. .. .... . . .. . ...................... ....
lowQualScore : 4 0 6 7 3 3 1 6 00 6 5 2 888 111111111111 3 7 3 00 66 888 3 1111 11111 66 66 3 4 2222222 22 99 0000000000000000000000000000000000000000000000000000000000000000000000 5 5 6 0 99 44 9999 2 3 66 1 0000000000000000000000 1111
consensus : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTNTAGATTCAAA---ATGTAAATCTG--AAAAATTCAAAC-A-ATGAAAAA--A--A--CCATACACG---T---AC--GAA-----A-T--C--A----A--GAAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
Reference ( family-1371 ) : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTNTAGATTCAAA---ATGTAAATCTG--AAAAATTCAAAC-A-ATGAAAAA--A--A--CCATACACG---T---AC--GAA-----A-T--C--A----A--GAAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
gi|1 : AGAGA-C-GGGTCTGTCTTGAAGCACTTCAAA-TTTAAAA
gi|1 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaAGA--TAATAA--ATCATAGATTCGAA---ATGAAAGTATG--AAAAATCCA-----------------------TATACATG---T---AT--GAATT---ACT--A--A----A--GGAGCTTGATATAACAGT-ATGATTTTTTTCC---GGAAAA-T--TGTTCTCTTCTACAGGTCTTTTCCT--------TT----GTTACCCCGACTTGATCCTTcagagataataaatcatagattcgaaatgaaagtatgaaaaatccatatacatgtatgaattactaaaggagcttgatataacagtatgatttttttccggaaaattgttctcttctacaggtcttttcctttgttaccccgacttgatcctt
gi|10 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaagagacgggtctgtcttgaagcacttcaaatttaaaacagGGA-C-AGGCTTGCCATAAGGGACC-CAAA-GCCAGAAT----G-TCAAAATC--AATA-TTTAA-TGGATAAAA-TGCTGT-----T-TACATCA-GCTTTA-AGAGTGAA--GTT---TAA-C----ATTG----TAGA--CAATTG--ATCATAGACT---A---ACG-AAGTCTGCAGAAAAT
gi|11 : attctttaAAC-ATATGAAAAA--ATTC--CTATACATG---TTCGACAGGAG-----A-TAACGGA----A--TAAATTTTATGTTACAAT-ACATTTTTT-TCC---GGAAAA-T--TGTTCTCCCATGTGTG--------T--------TG----GTTaatttgtaaaat
gi|13 : gaattgagctggaacaactttcgaaatgAGCGA-A-AGGCCTGCTCTGATAGACTTCAAG-GCCAAAACTGAAG-CTAAAATT--GGTG-CTAAGAGAGAGAAAG-CATTGT-----G-CACGTCA-ACTGTG-ACAGTTAA--TTT---TAG-C----ATtctttgtta
gi|14 : ataaaaatatcgtaaattcgtctAT-A-ATGAAAAA--T--G--ATATATACG---T---AC--GAATGAAAA-T--T--ATAAAA--GAAACTTGATATAA---T-GTCACTCTT-TTC---GAAAAA-T--TCTTCTCTCGTAAATG--------T--------TTTTTTGTTGCCCTGAATTGATCTTT
gi|15 : tcagtGGA-TTCAA---CCAAGA-----GACCTAAATCTTGGTGGCTAAAATAGGGAAAAACACGGT-----T-AAGGTCA-ATTTTGGAAGGTGAAAATTT---TAGGC----ATTG----CAAA--AATTAAATATTTTAGGT
gi|16 : TGAAAAATTA--A--CAA---ATG---T---AC--AA-----------C--A-------GAAAATAACTA-AAGAAT-GTGACTTTT-CCC---AGAAAA-T--TGTTCTTCTCT-------------T--------TT----GTTACCCTGAATTGATCCTT
gi|17 : GAAAG-CACTGT-----T-TATTCCA-AGTTTG-AAGGTCAA--TTT---CAG-C----CTCG----CAAA--TAATAA--ATTTTAAG---AAG---ATTTGAA-CTG--AAA
gi|19 : caaaatataagtTTTT-TCC---GGAAAAAG--TGTTCTTAACTGTAGG--------TCTTATCTTTT----GTTACCCAGAATTGATCCTT
gi|2 : AAGGA-C-AG-CCTGCC----AGG-CT--AAA----AAGATTCATG-TCAAA-CC--AGT-------------AAAA-CTCTGT--------A----A-AGTTTG-AAGATTAA--TTT---CAG-C----ATTG----CAA--------------------TCAA-------TCAATTTG--AAAAATTCAAAC-A----------------------CACA---T---GG--CAA-----A-G--C--A----AT-GAAAGTAGATTTA-CAAT-GT--CTTGT-------GGAAAA-T--TGTTCTCCGTTATAGG--------T--------TT-----TTACCCTTAATTGATCCTTt
gi|20 : gtataaaaaaatgttgaaaaaggcgagttacacacaaaaaaatggttttaaaagtgtggcttgaggtgattcaatcatgataaaaaaaaaaaccaggttgtcaaaaattaagtttcttattatttgtaggtcttatgtgaatttcaacctcaagacaaggatgctcctaaaaaaaaacctattgtaattatttataagatgatgcacctatcaatatatcatgtcattcA-T--TGTTCTCCCCTACATG--------TATCAACTTTT----GTTACCCTGAATTGACCt
gi|21 : acatggcaatgtgACAATCGTGATTTTT-CACATTGGTAAA-T--T-TTCT------------------T--------TT----GTTACCCTGAATTGATCCTT
gi|22 : TATAACAAT-GTGACTTTT-TC--------AA-TGGTATTTTCT----------------T--------TT----GTTACCCTGAATTGATCC
gi|3 : -AGGCTTGTCTTGAAATACTTCAAA-GCCAAATTTTATG-TCAAAAT---GGTT-CTTAAATGGGGAAAA-TGCTGT-----T-CAGATCA-ATTTGG-AAAGTTCA--TTTCTACAG-TCTAAATTGAGTCTAAA--TAATGA--ATTGTAGGTTCAAA---ATGAAAATc
gi|4 : aaatgctgaaaaagaaatgatatagggattcaaaacatatcgaaaataaatattgaatatactgccattgatgctcctgattgagcaattctaagcatacataacatccgtgtaaatatgaagtaggttttcaaaaacagtttctttatctttgttgggttttcgtgaatctacacccaaggcaggggtattattgtaaattaaccatcagcaccaacaaaatagtgttGGGA-C-AGACCTGCCCTAAAGGACGTCAAG-ACCAAA-TTCATG-CCAAAATC--GGTG-CTAAAATAGGAAAAA-CATTGTATACATGTAGGCCA-ACTT-G-TTGGTAAA--TTT---CAG-C----ATCA----CAGA--TAATGA--ATGTTAGATTCAAA---CTGTAAATTTG--AAAAATGCAAGC-A-aggccaaaaac
gi|5 : gtattcaaacaatgacaaaaggaagctaagcacacagtaacagcggtgtttcgtgtggcttactgagatacaccaccttcaagaactaaagatatgaatatgaaccaggttgtccaaaatcagattcccttatttgtaggcttttgtgattttttgtgaaaattctggggtaaattgttctgaagattgcaacctatcaaaatataataatttcattttAGAGAGC-AGTCATGCCTTGAAGGTCTTCAAA-GCTAAAATTCCTG-TCAAAATC--GGTG-ATTAGACGGGGAAAC-TGCTAT-----T-TAGG-CATATTTTG-ATTGTTAA--CTT---TAA-C----ATTG----TAGG--TAATAC--ATTATAAGCTCAAA---A--------TG--AAAAATT------A-AT-AGAAT--A--A--CCAT----------------GAA-----A-T--C---------------TTGATATAATAAT-GTG--------CC-------------TGTTCTCCCCTATAGGCCTTTTCTT--------TT----GTTACCCTGAATTGATCC
gi|6 : aggtcttcaaaaacaggccccctaatttggtattggattttcataaatttttacctcaaggtaatactattcaaattgtttttaagattgcaacctttaaaattctGGGG-C-AATCCTGGTTTGAAGAACATCAAA-GCCAAAATTTATG-TCAAAACA--GGTG-C----ATGCTGAA------TAT-----T----GTGG-ATATTG-AA--TTGG---TT---CAA-A----ATTA-----AAA--T-ATGA--A----AAATTCAAATCTATGTGCAACAG---AAAAT---AAC----CGCAAAA--A------CATACATG---T---AT----A-----A-T--T--A----A----------------------------TT-TCC---GG-AAA-T--TGCTCTTCCCTACAGGTCTTTCT-T--------TT----GTTAC
gi|7 : ctttctcaattttgttggtttcgaccccaaggtataggagtgcccctataggaatcctgcatgctacaaaatactagtatgggggaaaccccaataatAGGGA-C-AAGCCTGCCATGAAGGACTTCAAA-GCCAAAATTCATT-CCAAAATC--GATG-CTAAAATAAGGAAAA-CAACAT-----C-TAAGTCA-TCTGTG-ATGGTTAA--TTT---AAG-C----ATTG----CAAA--TAATAC--ATTTCAGATTCAAA---TTGTAAATCTA--AAAAATTCAAACAA-ATGAAAAA--A--AACCCAAACCCAATTC---AC--AAA-----A-TCCC--A----AACGAAAGCTGATATAACAAT-GTGACTTTT-CCC---CGAAAA-T--TGTTCTCTCCTCTAGG--------TA-------TT----GTTGCCTTGAAATGATCCTT
gi|8 : GGGA-CCAGGC-TGCCCTGAAGGACTTTA---GCCAAAACTCATG-CCAAATTT--GGTG-CTCAAATAGGGAAAA-CACAGT-----T-TGTGTCA-AGTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTTTAGATCCAAA---TTG
gi|9 : atttttgtagctttttcatgaattcaacctcagaactggggtgtcctaatggaaattgttctttagattgcaattcatcaaaatatcctaatttcattatTGTCTGGAGGGACTTCAAAAGCCAA--TTCCAG-TCAAAATC--AATG-ATTAAA-GGGG-------------------------------G-AAGGTTGA--TTT---TTA-C----ATTG----TAAATTTGATAA--ATTACA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGTGCTGAAAACCTAGACCCAGAGTGAGGCGGATTCGAACCACCGCAAAAAGCAATCACAGCATATACTGCTAGCGGTGCAGCTGACTGGGTTATTCTGAGCACAAAATGTCTGACCAGGTTTTCAAAAA
Unaligned ( gi|18 ): GCTACACTAACTTCAAAAACCGGGGTATAAATTCATTTATGAACCAGGTTGTCAAAACCAGGCTCCCT
Unaligned ( gi|23 ): GTAAATTGTTCTAAAGATTGCGACCTATTACAATATCACAATTTCATTTAGGGTC
Unaligned ( gi|24 ): GCAGATTCAAACATGGCAATAAATAATCACAGCATATCTGCCACCAGTACAGCT
Unaligned ( gi|25 ): GTTCTCCTCTGTAGGTCTTTCCTTTCGTTATCCTGATTTATTGCCTTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111 1111111 1111111111111111111111111111111111111111111111111111111111111111111111 5555555555555555555555
lowQualScore : 4 4 1 0 4 3 0 3 55 3 3 1 555 999999999999 3 3 3 11 44 555 3 7777 88888 44 44 3 0 0000000 22 66 1111111111111111111111111111111111111111111111111111111111111111111111 4 0 1 4 44 55 6666 2 3 44 3 7777777777777777777777 7777
lowQualScore : . . . . . . . . .. . . . ... ............ . . . .. .. ... . .... ..... .. .. . . ....... .. .. ...................................................................... . . . . .. .. .... . . .. . ...................... ....
lowQualScore : 4 0 6 7 3 3 1 6 00 6 5 2 888 111111111111 3 7 3 00 66 888 3 1111 11111 66 66 3 4 2222222 22 99 0000000000000000000000000000000000000000000000000000000000000000000000 5 5 6 0 99 44 9999 2 3 66 1 0000000000000000000000 1111
consensus : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTNTAGATTCAAA---ATGTAAATCTG--AAAAATTCAAAC-A-ATGAAAAA--A--A--CCATACACG---T---AC--GAA-----A-T--C--A----A--GAAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
Reference ( family-1371 ) : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTNTAGATTCAAA---ATGTAAATCTG--AAAAATTCAAAC-A-ATGAAAAA--A--A--CCATACACG---T---AC--GAA-----A-T--C--A----A--GAAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
gi|1 : AGAGA-C-GGGTCTGTCTTGAAGCACTTCAAA-TTTAAAA
gi|1 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaAGA--TAATAA--ATCATAGATTCGAA---ATGAAAGTATG--AAAAATCCA-----------------------TATACATG---T---AT--GAATT---ACT--A--A----A--GGAGCTTGATATAACAGT-ATGATTTTTTTCC---GGAAAA-T--TGTTCTCTTCTACAGGTCTTTTCCT--------TT----GTTACCCCGACTTGATCCTTcagagataataaatcatagattcgaaatgaaagtatgaaaaatccatatacatgtatgaattactaaaggagcttgatataacagtatgatttttttccggaaaattgttctcttctacaggtcttttcctttgttaccccgacttgatcctt
gi|10 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaagagacgggtctgtcttgaagcacttcaaatttaaaacagGGA-C-AGGCTTGCCATAAGGGACC-CAAA-GCCAGAAT----G-TCAAAATC--AATA-TTTAA-TGGATAAAA-TGCTGT-----T-TACATCA-GCTTTA-AGAGTGAA--GTT---TAA-C----ATTG----TAGA--CAATTG--ATCATAGACT---A---ACG-AAGTCTGCAGAAAAT
gi|11 : attctttaAAC-ATATGAAAAA--ATTC--CTATACATG---TTCGACAGGAG-----A-TAACGGA----A--TAAATTTTATGTTACAAT-ACATTTTTT-TCC---GGAAAA-T--TGTTCTCCCATGTGTG--------T--------TG----GTTaatttgtaaaat
gi|13 : gaattgagctggaacaactttcgaaatgAGCGA-A-AGGCCTGCTCTGATAGACTTCAAG-GCCAAAACTGAAG-CTAAAATT--GGTG-CTAAGAGAGAGAAAG-CATTGT-----G-CACGTCA-ACTGTG-ACAGTTAA--TTT---TAG-C----ATtctttgtta
gi|14 : ataaaaatatcgtaaattcgtctAT-A-ATGAAAAA--T--G--ATATATACG---T---AC--GAATGAAAA-T--T--ATAAAA--GAAACTTGATATAA---T-GTCACTCTT-TTC---GAAAAA-T--TCTTCTCTCGTAAATG--------T--------TTTTTTGTTGCCCTGAATTGATCTTT
gi|15 : tcagtGGA-TTCAA---CCAAGA-----GACCTAAATCTTGGTGGCTAAAATAGGGAAAAACACGGT-----T-AAGGTCA-ATTTTGGAAGGTGAAAATTT---TAGGC----ATTG----CAAA--AATTAAATATTTTAGGT
gi|16 : TGAAAAATTA--A--CAA---ATG---T---AC--AA-----------C--A-------GAAAATAACTA-AAGAAT-GTGACTTTT-CCC---AGAAAA-T--TGTTCTTCTCT-------------T--------TT----GTTACCCTGAATTGATCCTT
gi|17 : GAAAG-CACTGT-----T-TATTCCA-AGTTTG-AAGGTCAA--TTT---CAG-C----CTCG----CAAA--TAATAA--ATTTTAAG---AAG---ATTTGAA-CTG--AAA
gi|19 : caaaatataagtTTTT-TCC---GGAAAAAG--TGTTCTTAACTGTAGG--------TCTTATCTTTT----GTTACCCAGAATTGATCCTT
gi|2 : AAGGA-C-AG-CCTGCC----AGG-CT--AAA----AAGATTCATG-TCAAA-CC--AGT-------------AAAA-CTCTGT--------A----A-AGTTTG-AAGATTAA--TTT---CAG-C----ATTG----CAA--------------------TCAA-------TCAATTTG--AAAAATTCAAAC-A----------------------CACA---T---GG--CAA-----A-G--C--A----AT-GAAAGTAGATTTA-CAAT-GT--CTTGT-------GGAAAA-T--TGTTCTCCGTTATAGG--------T--------TT-----TTACCCTTAATTGATCCTTt
gi|20 : gtataaaaaaatgttgaaaaaggcgagttacacacaaaaaaatggttttaaaagtgtggcttgaggtgattcaatcatgataaaaaaaaaaaccaggttgtcaaaaattaagtttcttattatttgtaggtcttatgtgaatttcaacctcaagacaaggatgctcctaaaaaaaaacctattgtaattatttataagatgatgcacctatcaatatatcatgtcattcA-T--TGTTCTCCCCTACATG--------TATCAACTTTT----GTTACCCTGAATTGACCt
gi|21 : acatggcaatgtgACAATCGTGATTTTT-CACATTGGTAAA-T--T-TTCT------------------T--------TT----GTTACCCTGAATTGATCCTT
gi|22 : TATAACAAT-GTGACTTTT-TC--------AA-TGGTATTTTCT----------------T--------TT----GTTACCCTGAATTGATCC
gi|3 : -AGGCTTGTCTTGAAATACTTCAAA-GCCAAATTTTATG-TCAAAAT---GGTT-CTTAAATGGGGAAAA-TGCTGT-----T-CAGATCA-ATTTGG-AAAGTTCA--TTTCTACAG-TCTAAATTGAGTCTAAA--TAATGA--ATTGTAGGTTCAAA---ATGAAAATc
gi|4 : aaatgctgaaaaagaaatgatatagggattcaaaacatatcgaaaataaatattgaatatactgccattgatgctcctgattgagcaattctaagcatacataacatccgtgtaaatatgaagtaggttttcaaaaacagtttctttatctttgttgggttttcgtgaatctacacccaaggcaggggtattattgtaaattaaccatcagcaccaacaaaatagtgttGGGA-C-AGACCTGCCCTAAAGGACGTCAAG-ACCAAA-TTCATG-CCAAAATC--GGTG-CTAAAATAGGAAAAA-CATTGTATACATGTAGGCCA-ACTT-G-TTGGTAAA--TTT---CAG-C----ATCA----CAGA--TAATGA--ATGTTAGATTCAAA---CTGTAAATTTG--AAAAATGCAAGC-A-aggccaaaaac
gi|5 : gtattcaaacaatgacaaaaggaagctaagcacacagtaacagcggtgtttcgtgtggcttactgagatacaccaccttcaagaactaaagatatgaatatgaaccaggttgtccaaaatcagattcccttatttgtaggcttttgtgattttttgtgaaaattctggggtaaattgttctgaagattgcaacctatcaaaatataataatttcattttAGAGAGC-AGTCATGCCTTGAAGGTCTTCAAA-GCTAAAATTCCTG-TCAAAATC--GGTG-ATTAGACGGGGAAAC-TGCTAT-----T-TAGG-CATATTTTG-ATTGTTAA--CTT---TAA-C----ATTG----TAGG--TAATAC--ATTATAAGCTCAAA---A--------TG--AAAAATT------A-AT-AGAAT--A--A--CCAT----------------GAA-----A-T--C---------------TTGATATAATAAT-GTG--------CC-------------TGTTCTCCCCTATAGGCCTTTTCTT--------TT----GTTACCCTGAATTGATCC
gi|6 : aggtcttcaaaaacaggccccctaatttggtattggattttcataaatttttacctcaaggtaatactattcaaattgtttttaagattgcaacctttaaaattctGGGG-C-AATCCTGGTTTGAAGAACATCAAA-GCCAAAATTTATG-TCAAAACA--GGTG-C----ATGCTGAA------TAT-----T----GTGG-ATATTG-AA--TTGG---TT---CAA-A----ATTA-----AAA--T-ATGA--A----AAATTCAAATCTATGTGCAACAG---AAAAT---AAC----CGCAAAA--A------CATACATG---T---AT----A-----A-T--T--A----A----------------------------TT-TCC---GG-AAA-T--TGCTCTTCCCTACAGGTCTTTCT-T--------TT----GTTAC
gi|7 : ctttctcaattttgttggtttcgaccccaaggtataggagtgcccctataggaatcctgcatgctacaaaatactagtatgggggaaaccccaataatAGGGA-C-AAGCCTGCCATGAAGGACTTCAAA-GCCAAAATTCATT-CCAAAATC--GATG-CTAAAATAAGGAAAA-CAACAT-----C-TAAGTCA-TCTGTG-ATGGTTAA--TTT---AAG-C----ATTG----CAAA--TAATAC--ATTTCAGATTCAAA---TTGTAAATCTA--AAAAATTCAAACAA-ATGAAAAA--A--AACCCAAACCCAATTC---AC--AAA-----A-TCCC--A----AACGAAAGCTGATATAACAAT-GTGACTTTT-CCC---CGAAAA-T--TGTTCTCTCCTCTAGG--------TA-------TT----GTTGCCTTGAAATGATCCTT
gi|8 : GGGA-CCAGGC-TGCCCTGAAGGACTTTA---GCCAAAACTCATG-CCAAATTT--GGTG-CTCAAATAGGGAAAA-CACAGT-----T-TGTGTCA-AGTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTTTAGATCCAAA---TTG
gi|9 : atttttgtagctttttcatgaattcaacctcagaactggggtgtcctaatggaaattgttctttagattgcaattcatcaaaatatcctaatttcattatTGTCTGGAGGGACTTCAAAAGCCAA--TTCCAG-TCAAAATC--AATG-ATTAAA-GGGG-------------------------------G-AAGGTTGA--TTT---TTA-C----ATTG----TAAATTTGATAA--ATTACA
blockSeqs : G C G A A A TT G A G ACA ATACATGTAGGC T C G CA AA CTA G CTAA AGTCT TT AT A TCTATGT TC CA TCAAACAAATGAAAAAAAACCCAAACCCAATTCACAAAATCCCAAACG T C C AT T ATTG A A GG C GTAGGTCTTATCTT TTTT
blockSeqs : . . G C . . . . A T CA GCACGT . T . AG . . . . C . . T ATTT TT . AACCGCAAAAACATACATGTATAATTAA C G . CA T G A . . C ACATGTATCAACTT .
blockSeqs : . . G T . . . . T T CA TAAGGT . G . AG . . . . C . . T ATGA TT . TCAAACACACATGGCAAAGCAATG A C . GA C G A . . T ATAGGCCTTTTCTT .
blockSeqs : . . A C . . . . A T CT TTATTC . G . AG . . . . C . . G CTGT AC . TAATAGAATAACCATGAAATC G C . GA T A A . . A ACAGGTCTTTCTT .
blockSeqs : . . T T . . . . T C TG TCAGAT . T . AA . . . . C . . T TTGT TC . G C . GA C G A . . G CTAGGTA .
blockSeqs : . . T T . . . . A T CA CTAAGT . C . TG . . . . T . . A ACG C . . T . GA T G T . . C GTGTGT .
blockSeqs : . . G A . . . . C T TG TTGTGT . T . TT . . . . C . . T T . . . C . G T G A . . C AAATGT .
blockSeqs : . . G C . . . . T T CA TTAGG . T . TG . . . . C . . T A . . . C C . . . C ATAGGT .
blockSeqs : . . T . . . . . . CA TGT . C . AG . . . . T . . A . . . . . . . . C T .
blockSeqs : . . . . . . . . A . G . AG . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . A . . . . . . . . . . T .
blockSeqCons : T* ATAGGTT***************
originalCons : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTNTAGATTCAAA---ATGTAAATCTG--AAAAATTCAAAC-A-ATGAAAAA--A--A--CCATACACG---T---AC--GAA-----A-T--C--A----A--GAAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATAGG--------T--------TT----GTTACCCTGAATTGATCCTT
finalCons : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTNTAGATTCAAA---ATGTAAATCTG--AAAAATTCAAAC-A-ATGAAAAA--A--A--CCATACACG---T---AC--GAA-----A-T--C--A----A--GAAANTTGATATAACAAT-GTGACTTTTT-CC---GGAAAA-T--TGTTCTCCCCTATAGGTT---------------TT----GTTACCCTGAATTGATCCTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGTGCTGAAAACCTAGACCCAGAGTGAGGCGGATTCGAACCACCGCAAAAAGCAATCACAGCATATACTGCTAGCGGTGCAGCTGACTGGGTTATTCTGAGCACAAAATGTCTGACCAGGTTTTCAAAAA
Unaligned ( gi|18 ): GCTACACTAACTTCAAAAACCGGGGTATAAATTCATTTATGAACCAGGTTGTCAAAACCAGGCTCCCT
Unaligned ( gi|23 ): GTAAATTGTTCTAAAGATTGCGACCTATTACAATATCACAATTTCATTTAGGGTC
Unaligned ( gi|24 ): GCAGATTCAAACATGGCAATAAATAATCACAGCATATCTGCCACCAGTACAGCT
Unaligned ( gi|25 ): GTTCTCCTCTGTAGGTCTTTCCTTTCGTTATCCTGATTTATTGCCTTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111 1111111 1111111111111111111111111111111111111111111111111111111111111111111111 6666666666666666666666666666
lowQualScore : 4 4 1 0 4 3 0 3 55 3 3 1 555 999999999999 3 3 3 11 44 555 3 7777 88888 44 44 3 0 0000000 22 66 1111111111111111111111111111111111111111111111111111111111111111111111 4 0 1 4 44 55 6666 2 3 44 0000000000000000000000000000 555
lowQualScore : . . . . . . . . .. . . . ... ............ . . . .. .. ... . .... ..... .. .. . . ....... .. .. ...................................................................... . . . . .. .. .... . . .. ............................ ...
lowQualScore : 4 0 6 7 3 3 1 6 00 6 5 2 888 111111111111 3 7 3 00 66 888 3 1111 11111 66 66 3 4 2222222 22 99 0000000000000000000000000000000000000000000000000000000000000000000000 5 5 6 0 99 44 9999 2 3 66 2222222222222222222222222222 888
consensus : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTNTAGATTCAAA---ATGTAAATCTG--AAAAATTCAAAC-A-ATGAAAAA--A--A--CCATACACG---T---AC--GAA-----A-T--C--A----A--GAAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATA----GG-------T-------TTT---GTTACCCTGAATTGATCCTT
Reference ( family-1371 ) : AGGGA-C-AGGCCTGCCTTGAAGGACTTCAAA-GCCAAAATTCATG-CCAAAATC--GGTG-CTNAAATGGGGAAAA-CGCTGT-----T-TANGTCA-ACTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTNTAGATTCAAA---ATGTAAATCTG--AAAAATTCAAAC-A-ATGAAAAA--A--A--CCATACACG---T---AC--GAA-----A-T--C--A----A--GAAANTTGATATAACAAT-GTGACTTTT-TCC---GGAAAA-T--TGTTCTCCCCTATA----GG-------T-------TTT---GTTACCCTGAATTGATCCTT
gi|1 : AGAGA-C-GGGTCTGTCTTGAAGCACTTCAAA-TTTAAAA
gi|1 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaAGA--TAATAA--ATCATAGATTCGAA---ATGAAAGTATG--AAAAATCCA-----------------------TATACATG---T---AT--GAATT---ACT--A--A----A--GGAGCTTGATATAACAGT-ATGATTTTTTTCC---GGAAAA-T--TGTTCTCTTCTACA----GG-------TCTTTTCCTTT---GTTACCCCGACTTGATCCTTcagagataataaatcatagattcgaaatgaaagtatgaaaaatccatatacatgtatgaattactaaaggagcttgatataacagtatgatttttttccggaaaattgttctcttctacaggtcttttcctttgttaccccgacttgatcctt
gi|10 : atgtgaaataaaaagtgtggcgtgatacggatcaatcgaaccatataaaaaaaataaattactaatcgcagcagtgcagtggatgacttgagctattctatgctaaaagtacatatacccatgtaaatatgaaccatgtccgtctaatttttcgtcggtttttcgtgaatttctacccaaccaacgctatggtgcctctaaaaatactattgtaaattgttcttgaatttttaatctaccaaaataccatcaaaaattacatgtaagagacgggtctgtcttgaagcacttcaaatttaaaacagGGA-C-AGGCTTGCCATAAGGGACC-CAAA-GCCAGAAT----G-TCAAAATC--AATA-TTTAA-TGGATAAAA-TGCTGT-----T-TACATCA-GCTTTA-AGAGTGAA--GTT---TAA-C----ATTG----TAGA--CAATTG--ATCATAGACT---A---ACG-AAGTCTGCAGAAAAT
gi|11 : attctttaAAC-ATATGAAAAA--ATTC--CTATACATG---TTCGACAGGAG-----A-TAACGGA----A--TAAATTTTATGTTACAAT-ACATTTTTT-TCC---GGAAAA-T--TGTTCTCCCATGTGTGTTGG-------TTTC----TTT---GTTAaatttgtaaaat
gi|13 : gaattgagctggaacaactttcgaaatgAGCGA-A-AGGCCTGCTCTGATAGACTTCAAG-GCCAAAACTGAAG-CTAAAATT--GGTG-CTAAGAGAGAGAAAG-CATTGT-----G-CACGTCA-ACTGTG-ACAGTTAA--TTT---TAG-C----AT
gi|14 : ataaaaatatcgtaaattcgtctAT-A-ATGAAAAA--T--G--ATATATACG---T---AC--GAATGAAAA-T--T--ATAAAA--GAAACTTGATATAA---T-GTCACTCTT-TTC---GAAAAA-T--TCTTCTCTCGTAAA----TG-------T-------TTTTTTGTTGCCCTGAATTGATCTTT
gi|15 : tcagtGGA-TTCAA---CCAAGA-----GACCTAAATCTTGGTGGCTAAAATAGGGAAAAACACGGT-----T-AAGGTCA-ATTTTGGAAGGTGAAAATTT---TAGGC----ATTG----CAAA--AATTAAATATTTTAGGT
gi|16 : TGAAAAATTA--A--CAA---ATG---T---AC--AA-----------C--A-------GAAAATAACTA-AAGAAT-GTGACTTTT-CCC---AGAAAA-T--TGTTCTTCTC-----------------T-------TTT---GTTACCCTGAATTGATCCTT
gi|17 : GAAAG-CACTGT-----T-TATTCCA-AGTTTG-AAGGTCAA--TTT---CAG-C----CTCG----CAAA--TAATAA--ATTTTAAG---AAG---ATTTGAA-CTG--AAA
gi|19 : caaaatataagtTTTT-TCC---GGAAAAAG--TGTTCTTAACTGTA----GG-------TCTTATCTTTT---GTTACCCAGAATTGATCCTT
gi|2 : AAGGA-C-AG-CCTGCC----AGG-CT--AAA----AAGATTCATG-TCAAA-CC--AGT-------------AAAA-CTCTGT--------A----A-AGTTTG-AAGATTAA--TTT---CAG-C----ATTG----CAA--------------------TCAA-------TCAATTTG--AAAAATTCAAAC-A----------------------CACA---T---GG--CAA-----A-G--C--A----AT-GAAAGTAGATTTA-CAAT-GT--CTTGT-------GGAAAA-T--TGTTCTCCGTTATA----GG-------T-------TT-----TTACCCTTAATTGATCCTTt
gi|20 : gtataaaaaaatgttgaaaaaggcgagttacacacaaaaaaatggttttaaaagtgtggcttgaggtgattcaatcatgataaaaaaaaaaaccaggttgtcaaaaattaagtttcttattatttgtaggtcttatgtgaatttcaacctcaagacaaggatgctcctaaaaaaaaacctattgtaattatttataagatgatgcacctatcaatatatcatgtcattcA-T--TGTTCTCCCCTACA----TG-------TATCAACTTTT---GTTACCCTGAATTGACCt
gi|21 : acatggcaatgtgACAATCGTGATTTTT-CACATTGGTAAA-T--T-TTCT-----------------------------TTT---GTTACCCTGAATTGATCCTT
gi|22 : TATAACAAT-GTGACTTTT-TC--------AA-TGGTATTTTC--------------------T-------TTT---GTTACCCTGAATTGATCC
gi|3 : -AGGCTTGTCTTGAAATACTTCAAA-GCCAAATTTTATG-TCAAAAT---GGTT-CTTAAATGGGGAAAA-TGCTGT-----T-CAGATCA-ATTTGG-AAAGTTCA--TTTCTACAG-TCTAAATTGAGTCTAAA--TAATGA--ATTGTAGGTTCAAA---ATGAAAATc
gi|4 : aaatgctgaaaaagaaatgatatagggattcaaaacatatcgaaaataaatattgaatatactgccattgatgctcctgattgagcaattctaagcatacataacatccgtgtaaatatgaagtaggttttcaaaaacagtttctttatctttgttgggttttcgtgaatctacacccaaggcaggggtattattgtaaattaaccatcagcaccaacaaaatagtgttGGGA-C-AGACCTGCCCTAAAGGACGTCAAG-ACCAAA-TTCATG-CCAAAATC--GGTG-CTAAAATAGGAAAAA-CATTGTATACATGTAGGCCA-ACTT-G-TTGGTAAA--TTT---CAG-C----ATCA----CAGA--TAATGA--ATGTTAGATTCAAA---CTGTAAATTTG--AAAAATGCAAGC-A-aggccaaaaac
gi|5 : gtattcaaacaatgacaaaaggaagctaagcacacagtaacagcggtgtttcgtgtggcttactgagatacaccaccttcaagaactaaagatatgaatatgaaccaggttgtccaaaatcagattcccttatttgtaggcttttgtgattttttgtgaaaattctggggtaaattgttctgaagattgcaacctatcaaaatataataatttcattttAGAGAGC-AGTCATGCCTTGAAGGTCTTCAAA-GCTAAAATTCCTG-TCAAAATC--GGTG-ATTAGACGGGGAAAC-TGCTAT-----T-TAGG-CATATTTTG-ATTGTTAA--CTT---TAA-C----ATTG----TAGG--TAATAC--ATTATAAGCTCAAA---A--------TG--AAAAATT------A-AT-AGAAT--A--A--CCAT----------------GAA-----A-T--C---------------TTGATATAATAAT-GTG--------CC-------------TGTTCTCCCCTATA----GGCCTTTTCT-------TTT---GTTACCCTGAATTGATCC
gi|6 : aggtcttcaaaaacaggccccctaatttggtattggattttcataaatttttacctcaaggtaatactattcaaattgtttttaagattgcaacctttaaaattctGGGG-C-AATCCTGGTTTGAAGAACATCAAA-GCCAAAATTTATG-TCAAAACA--GGTG-C----ATGCTGAA------TAT-----T----GTGG-ATATTG-AA--TTGG---TT---CAA-A----ATTA-----AAA--T-ATGA--A----AAATTCAAATCTATGTGCAACAG---AAAAT---AAC----CGCAAAA--A------CATACATG---T---AT----A-----A-T--T--A----A----------------------------TT-TCC---GG-AAA-T--TGCTCTTCCCTACA----GGTCTTTC-T-------TTT---GTTAC
gi|7 : ctttctcaattttgttggtttcgaccccaaggtataggagtgcccctataggaatcctgcatgctacaaaatactagtatgggggaaaccccaataatAGGGA-C-AAGCCTGCCATGAAGGACTTCAAA-GCCAAAATTCATT-CCAAAATC--GATG-CTAAAATAAGGAAAA-CAACAT-----C-TAAGTCA-TCTGTG-ATGGTTAA--TTT---AAG-C----ATTG----CAAA--TAATAC--ATTTCAGATTCAAA---TTGTAAATCTA--AAAAATTCAAACAA-ATGAAAAA--A--AACCCAAACCCAATTC---AC--AAA-----A-TCCC--A----AACGAAAGCTGATATAACAAT-GTGACTTTT-CCC---CGAAAA-T--TGTTCTCTCCTCTA----GG-------T-------ATT---GTTGCCTTGAAATGATCCTT
gi|8 : GGGA-CCAGGC-TGCCCTGAAGGACTTTA---GCCAAAACTCATG-CCAAATTT--GGTG-CTCAAATAGGGAAAA-CACAGT-----T-TGTGTCA-AGTTTG-AAGGTTAA--TTT---CAG-C----ATTG----CAAA--TAATAA--ATTTTAGATCCAAA---TTG
gi|9 : atttttgtagctttttcatgaattcaacctcagaactggggtgtcctaatggaaattgttctttagattgcaattcatcaaaatatcctaatttcattatTGTCTGGAGGGACTTCAAAAGCCAA--TTCCAG-TCAAAATC--AATG-ATTAAA-GGGG-------------------------------G-AAGGTTGA--TTT---TTA-C----ATTG----TAAATTTGATAA--ATTACA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGTGCTGAAAACCTAGACCCAGAGTGAGGCGGATTCGAACCACCGCAAAAAGCAATCACAGCATATACTGCTAGCGGTGCAGCTGACTGGGTTATTCTGAGCACAAAATGTCTGACCAGGTTTTCAAAAA
Unaligned ( gi|18 ): GCTACACTAACTTCAAAAACCGGGGTATAAATTCATTTATGAACCAGGTTGTCAAAACCAGGCTCCCT
Unaligned ( gi|23 ): GTAAATTGTTCTAAAGATTGCGACCTATTACAATATCACAATTTCATTTAGGGTC
Unaligned ( gi|24 ): GCAGATTCAAACATGGCAATAAATAATCACAGCATATCTGCCACCAGTACAGCT
Unaligned ( gi|25 ): GTTCTCCTCTGTAGGTCTTTCCTTTCGTTATCCTGATTTATTGCCTTAT