lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 3 2 222222222222222 111111 33 555555555555555555555 11111 1111 1 33 11 22 11111 5555555555555555 11 111 111 2 11 2222 3333333 4 3333333333 2 22 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 1 2 1 22 11 444444 22 77777777777 1 4444444 66666666666666 1 22 99999999999999999999
lowQualScore : 5 1 7 0 3 7 333333333333333 3 666666 66 2 666666666666666666666 4 00000 777 4 55 4 0000 0 5 5 999999 11 77 66 2 8 33333 8 0000000000000000 11 8 777 4 777 3 33 1111 7 5555555 0 8 0000000000 3 77 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 4 6 4 0 6 22 11 555555 4 77 99999999999 4 5 3 0000000 22222222222222 6 22 0 44444444444444444444 2 4
lowQualScore : . . . . . . ............... . ...... .. . ..................... . ..... ... . .. . .... . . . ...... .. .. .. . . ..... . ................ .. . ... . ... . .. .... . ....... . . .......... . .. ........................................................................................... . . . . . . .. .. ...... . .. ........... . . . ....... .............. . .. . .................... . .
lowQualScore : 8 9 0 1 6 3 000000000000000 9 111111 11 0 333333333333333333333 0 00000 000 0 55 4 6666 0 0 0 666666 99 00 99 8 0 44444 0 6666666666666666 00 0 555 0 555 0 88 2222 0 5555555 0 3 0000000000 3 55 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 0 0 0 8 0 00 00 000000 0 55 88888888888 0 5 0 6666666 22222222222222 0 00 6 55555555555555555555 5 0
consensus : GTTCAAG-TTCAAGTTCATTT-ATT-CAC-TCA-AGTCAAT-A-----TTAA--T---ATG--ACATAAGAGGT-ACAGTATATA---AT-ATA-ATCAT-AA-----A---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--T---CAGC-AGAGAATGGTG--TAAATTA-TGAAT--CAC-GGA--C--A--AAA--A--TTA--CA-CA---AGNTTTT---GCTCTGGTGAAAAAAC--GT----GACGGCATGTAA----ATTTTTG-TGATATATCAT-AA----TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATTGATTCAAAGCGCATACAC-----TTTTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGNCTAAAGACTTTAGAAATAAAATATGCAACAAGTCT--CTTTTGAA-GTGAATAATTAGTNGCTTAGACATGTAT----CAGGTTACAANAATTTCAGATGTTGTATTTGGT------------TCTATTAAAAACCGAATATCCATCAGGTAAAAAAAA-ATTT------CCNGCAGCTCAGTAANTGC
Reference ( gi|4 ) : GTTCAAGCTTCAAGCTCATTTTATT-CAC-TCA-GTTAAAT-A-----TTCA--T---ATG-CACATAAGAGGTTACAGTAGATA---AT-TTA-ATCAT-AA-----A---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--T---CAG--AGAGAATGGTGA-TAAATCA-TGAAT--CAC-GGA--C--AGTAAA--A--TTA--CA-CA---AGTTTTT---GCTCTGGTGAAGAAAC--GT----GACAGCATGT-A----ATTTTTGCTGATAAATATT-AA----TTGAAGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATT--TTCAA-GCGT-TACAC-----TT---AT-GT-----AATAT--ATTTTCGTA--CATG--TATAAAA--GT--TAAACATCACA-CTTCAGAACA-TCTTATTTG-GAC-AAAG-CTTTAGAGATAAAA-ATGCAA--AGTCT--CTT---GA-GTGAATAATTAGTAG--TAGA----T------TAGGTTACAAAAATTTCAAA----GCATTTGGT------------TCTATT-AAAAC--AATATCTATCAGGT---------ATTTTTTTTCCCCGCAGCTCAGTAAATGC
gi|8 : GTTCATG-TCCAAGTTAATTT-ATT-CAC-TCA-AGTCAAT-C-----ATCAATT---ATG--GCATAAGAAGGTACAGTATATA-------TA-ATCATTAA-----A---TAATA--AC-TAGA-TGAATC----AACCGTGG-AT-G--T---CAGCAAGAGA-TGGTG--TAAATTAATGAAT--CACCGGA--C--A---AA--A--TTATTCA-CA---AGTTTTT---GCTCTGGTGAAAACACCAAT----TACGGTATG--A----ATT
gi|24 : aGTTCAAG-TTCAAGTTCATTT-ATT-CAC-TCA-
gi|21 : GTTCAAG-TTCAAGTTCAATTTATT-CGC-TCA-
gi|3 : caaTTCAAG-TTCA-GTTCATTGTATTTCACCTCA----AGAT-ACTTAGTTCA--TTTCATG--ACATAAACGGGTAC--TAGGTGT--ATATCACATCAT-AATAGAAA---CA-TA--ACGT-GA-TGAATCCGTCAACCGTGG-AT-AGAT---AAGC-AGAGA-TG-TAA-TAA-TCA-TGA-T--CAC-GGA--CGAACTAAACTA--TTA--CACCACATAGTATTTCTCACTCTGTGGAAAAAAC--GTCATCGAC-GCATAT-ACTACATTGTTG-TGACTAATATTCAATAATTTGAAGACAa
gi|11 : TCCAAG-TTCAAATTCATTT-ATT-CAC-TCA-AGTCAAT-A-----TTAA--A---ATG--ACATAAGAGGT-ACAGTATATATATAT-ATA-ATCAT-AA-----A---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--T---AGG--AAAtgtagttggtccatacttacatatatatatacttgtgcagagctattgattcaaagcgcatacactttttatcgtggcacaaatattttgctaggcatgggtataaaatagtagtaaacctcacagcttcagaagagtcttgtttgcgactaaagatttagaaataaaatatgcaacaagtctcttttgaagtgaataattagttgcttagacatgtcaggttacaataatttcagatgttgtcttggtctattaaaaaccgagtagtcatcagataaaaaaatttccggcagctcagtaattg
gi|9 : TTCAAGTTTCA-------TTTATT-CACGTCA-GTCAAGTTA-----TTAA--T---ATG-ACCATAAGAGGTAGCAGT--ATA---AT-ATATATCAT-GA-----AAATTA-TAGTACATAGATTGAATC----AAC-GTGGTATGG--T---CAGC-AGA-AATGGTGGTTAAATTA-TGAATGGCAC-TGAACC--AAAATA--A--TTA--CA-tattgcaaga
gi|22 : CAAG-TTCAAGTTCATTT-ATT-CAC-TCA-tgca
gi|6 : taAAG-TTCAAGTTCATTT-ATT-CAC-TCA-AGTCAAT-A-----TTAA--T---ATG--ACTAAAGTGGT-ACAGTATATA-------TA-ATCAT-AA-----A---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--T---CAGC-AGAG-ATGGTG--TAAATTA-TG-AT--CAC-GGA--C--A--AAAT-A--TTA--CA-CA---AGATTTT---GCTCTGGTGAA-AAAC--GT----GACAGCATGTAA----ATTTTTG-TGATATATCAT-AA----TTGAAGA-AATagt
gi|12 : TCAAGTTCATTT-ATT-CAC-TCA-AGTCAAT-A-----TTAA------ATG--ACACATG-----------------------------T-AA-----A---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--T---CAGC-AGAG-ATGGTG--TAAATacgttagtcatatatatatattgtagtattttcaaggcgtacactttatgtaatataaa
gi|7 : aagTTTATT-CAC-TCA-AGTCAAT-A-----TTAA--A---ATG--ACATAAGAGGT-ACAGTATATA-------TA-ATCAT-AA-----A---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--T---CAGC-AGAG-ATGGTG--TAAATTA-TAAA---AAC-GGA--C-----AAA--ATTTTA--CA-TA---AGATTTT---GCTCTGGTGAA-AAAC--GT----GAAAGCCAGTAA----ATTTTTG-TGATATATCAT-AA----TTGAAGA-AATt
gi|10 : TTAATT-CGC-TCAAGTCA--T-------TTCA--T---ATAACATATATGAGGT-GCAGTG--TA---AT---A-ACCTT-AA-----A---TA-AA--ACATAGA-Tactttatgtaatatata
gi|15 : agttgaattaAATT-A-----TTCA--T---ATG--ACATAAGAGGT-AC--TATATAT--AT-ACA-ATCAT-AA-----A---TA-CA--ACATAacgtaagcagagatatgtaaaaacgatccatcagtgacaaggtatt
gi|13 : A---AT-ATA-ATCAT-AA-----A---TA-CA--ATATTGA-TAAATC----AAC-GTGA-AT-G--GAAATAG--A-AAAATTGTGA-CAAA
gi|6 : agtatatatataTGTAGTATT--TTCAAGGCG--TACACT----TT---AT-GT-----AATAT--Aaa
gi|1 : aagttcaagttcatttattcactcaagtcaatattaatatgactaaagtggtacagtatatataatcataaatataacatagatgaatcaacgtggatgtcagcagagatggtgtaaattatgatcacggacaaaatattacacaagattttgctctggtgaaaaacgtgacagcatgtaaatttttgtgatatatcataattgaagaaatacgttagtcatatatatatatTATTGATTCAAAGCGCATACAC-----TTTTTATCGTGGCACAA-AT--ATTTTGCTAGGCATGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAG-ATTTAGAAATAAAATATGCAACAAGTCT--CTTTTGAA-GTGAATAATTAGTTGCTTAGACATGT------CAGGTTACAATAATTTCAGATGTTGT-CTTGG-------------TCTATTAAAAACCGAGTAGTCATCAGATAAAAAA---ATTT------CCGGCAGCTCAGTAATTGCaa
gi|3 : TATTGATTCAAAGCGCATACAC-----TTTTTATCGTGGCACAA-AT--ATTTTGCTAGGCATGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAG-ATTTAGAAATAAAATATGCAACAAGTCT--CTTTTGAA-GTGAATAATTAGTTGCTTAGACATGT------CAGGTTACAATAATTTCAGATGTTGT-CTTGG-------------TCTATTAAAAACCGAGTAGTCATCAGATAAAAAA---ATTT------CCGGCAGCTCAGTAATTGtaccggattccattaaatatatgatacctcagtcttcctaattttgttgcaattacagatacgctacagtctatcgttcattggcgagtaccacttcatgctacccaatcaacaggaaaaatgatgattagtcgctggttgtcgttctaaattttgatttaaactagtggtcatatacattttgagcgcatgtttatcaaagagcttatcaatggacaaaatattgtttgtcgtaaaattctgctaacataagtcctttgtcgaatcatattatttcactatgccatgtttcataaaaatttggtctttaaggacttgacaaattacgaagaaatccatcttagctggtgacatggaagtgtgtagcttggttacatttcaaactttgacactcctcatgagtgtcacaagaatattatctgaatgccaacgaaaaccagggatttctcatttaatcaccacttttatactgctcgttgcgacaaaatatatgtaaataagtgtttacaaattttgttttcatcattggagagagactttagccccataggaaat
gi|2 : ttcaagttcagttcattgtatttcacctcaagatacttagttcatttcatgacataaacgggtactaggtgtatatcacatcataatagaaacataacgtgatgaatccgtcaaccgtggatagataagcagagatgtaataatcatgatcacggacgaactaaactattacaccacatagtatttctcactctgtggaaaaaacgtcatcgacgcatatactacattgttgtgactaatattcaataatttgaagacatgtagttggtccatacttacatatatatatacttgtgcagagcATT--TTCAAAGCAT--ACACGTACTTT---AT-GTTT---GATATTAATTTTTTT-----CG--TATAAAA--GTA-TAAACAT----------GA----TCTTATTTG-GTC-AAAGACT---GAGATAAAA-ATGCAA--AGTCT--CTTTTGAA-GTGAATAATTAGTAG--TAGA----CATTAGCTAGGTTACACAA-TTTCAGA----GTATTTGGT-------------CTATT-AAAAC--AATATCTATCAGGTAAAAAAAAAATT--------CCGCAGCTCAGTAAATGC
gi|14 : gtattaATTTG-GTC-AAAGACTTCAGAAATAAAA-ATACAA--AGTCT--CTT---tacacatattccaatttgttgcaattacagagattacagagagattacagagatggcccagtctatccactccagctacctacaggaaaatgatgaacagttgttctaatttgattaaactagttctaagttctttaggcatgtttaccaaataactttcaatcgaaaatattacgccatttctgtataaattggtcattgaggatttgaaaaactacggaagaaacccatctaacaggtacatgtacacaagttgtgctttgttcattccaaatatttgacagttcacatgtgtcaaaaatagttgaatacaagaaaaccagggatttctatttaatccccttttatactgctcgtgtaaatatatgtaaataattttacaaattttgttttcatcactggagagaactttagcccactaggaaat
gi|5 : ttaacattttatagtaatactaaatata-AAAGACTTTAGAGATAAAA-ATGCAA--AGTCTATTTT---GAAGTGAATAATTAGTAG--TAGA----TAT----TAGGTTACAAAA-TTTCAGA----GTATTTGGTACAAAAATTTGGTCTATT-AAAGC--AATATCTATCTGGTAAAAATAA-ATTT--------CGCAGCTCAGTAAATGCttgaag
gi|20 : TCAAA----GTATTTGGT-------------CTATT-AAAAC--AATATCCATCAGGT---------Atacacattccattaaataatgatactcatctccaattgtgttgcaattacagagatggcacagtctatcgttcattggagtaccactcaaccaacctatttcaacaggaaaatgattagttgttctaaatttgattaaactagttctatgtttttaggcatgtttataaaataactttcactcgaaaatattgttttgtaaattttgtaacataaagcccttg
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AGTAAATGCTACACATTCCATTAAATAATGATAACTCAGTCTCCAATTTTGTT
Unaligned ( gi|17 ): CTATTAAAACAGTAGTCATCAGATAAAAAAATTCCGCAGCTCAGTAATT
Unaligned ( gi|18 ): TTGAAGAAATGCGTTAGTCATATATATATTGTAGTATATTGAA
Unaligned ( gi|19 ): AGAGATGGCACAGTCTATCGTTCATTGGAGAACCACTCCACCA
Unaligned ( gi|23 ): TCAAGTTCATTTATTCACTCAAGTCAATAT
Alignments
lowQualScore : 111111111 11111111 11 11 22222 222222 111 1 11 1111 1111 1 11 111 1 1 77777777777777777777777777777777777777777777777777777777777777777777777777777 11 11 11 1111 11111111111 11 11111 11 11 1 22222 2 22 22 3333333333 4444444444444444 2 1 3333 11 222222222
lowQualScore : 3 3 3 3 3 3 6 55 3 3 888888888 4 4 4 4 8 3 3 666666 99999999 3 3 55 666 3 55 4 8888 4 4 4 4 55 2 4 44 0 00 66 5 1 77 5 77 888 55555 888888 8 1 444 0 11 7777 9 7777 8 0 33 444 0 0 77777777777777777777777777777777777777777777777777777777777777777777777777777 33 11 0 33 2222 88888888888 33 77777 0 8 22 22 2 2 8 5 11111 6 3 22 1 55 3333333333 0 8 2222222222222222 3 2 0000 1 33 3 333333333 1
lowQualScore : . . . . . . . .. . . ......... . . . . . . . ...... ........ . . .. ... . .. . .... . . . . .. . . .. . .. .. . . .. . .. ... ..... ...... . . ... . .. .... . .... . . .. ... . . ............................................................................. .. .. . .. .... ........... .. ..... . . .. .. . . . . ..... . . .. . .. .......... . . ................ . . .... . .. . ......... .
lowQualScore : 6 3 3 1 1 1 2 00 6 6 111111111 0 0 0 0 0 6 6 777777 55555555 6 6 00 444 6 00 0 5555 0 0 0 0 55 5 0 66 1 66 11 0 4 99 7 99 000 22222 333333 0 0 000 6 00 0000 6 4444 0 0 88 000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000 88 00 8 88 4444 55555555555 88 88888 2 8 55 00 5 5 8 0 44444 7 7 33 0 44 2222222222 8 8 2222222222222222 7 0 7777 3 33 2 888888888 0
consensus : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA---A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAGA-ATGGTG--TAA--ATT-ATGAAT--CA-CGGA--CA--AA---A-ATTA------CACA-AGTTTTT---GCTCTGGTGAAAAAAC--GT----GACAGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACNTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGACTTTAGAGATAAAA-ATGCAA-AAGTCTCTTTTGAAGTGAATAATTAGTAGCTTAGACATGTATC-AGGTTACAATAATTTCAGA-TGTT--GT------ATTTGG-TCTATTAAAAACC-AGTATCCATCAGGTAAAAAAAAATTT------CC-GCAGCTCAGTAANTGC
Reference ( family-1354 ) : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA---A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAGA-ATGGTG--TAA--ATT-ATGAAT--CA-CGGA--CA--AA---A-ATTA------CACA-AGNTTTT---GCTCTGGTGAAAAAAC--GT----GACGGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGNCTAAAGACTTTAGAAATAAAATATGCAACAAGTCTCTTTTGAAGTGAATAATTAGTNGCTTAGACATGTATC-AGGTTACAANAATTTCAGA-TGTT--GT------ATTTGGTTCTATTAAAAACCGAATATCCATCAGGTAAAAAAAAATTT------CCNGCAGCTCAGTAANTGC
gi|1 : TATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAA-AT--ATTTTGCTAGGCATGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGA-TTTAGAAATAAAATATGCAACAAGTCTCTTTTGAAGTGAATAATTAGTTGCTTAGACATG--TC-AGGTTACAATAATTTCAGA-TGTT--GT-------CTTGG-TCTATTAAAAACCGAGTAGTCATCAGAT--AAAAAAATTT------CCGGCAGCTCAGTAATTGC
gi|10 : AG-TTGAA--T-T-ATT-A-ATT-CGC-TCAAGTC-A--T---TTCA-T-------ATA-A-CATATATG-AGGT-G-C-AG---TGTA--------ATA-ACCT-TA--AA---T-AAA--ACATAGA-T----------A-C-GTA----------AGC-AGAGATAT-GTA--AAA--ACG-ATCCAT--CA-GTGA--CA--Ataccggattccattaaatatatgatacctcagtcttcctaattttgttgcaattacagatacgctacagtctatcgttcattggcgagtaccacttcatgctacccaatcaacaggaaaaatgatgattagtcgctggttgtcgttctaaattttgatttaaactagtggtcatatacattttgagcgcatgtttatcaaagagcttatcaatggacaaaatattgtttgtcgtaaaattctgctaacataagtcctttgtcgaatcatattatttcactatgccatgtttcataaaaatttggtctttaaggacttgacaaattacgaagaaatccatcttagctggtgacatggaagtgtgtagcttggttacatttcaaactttgacactcctcatgagtgtcacaagaatattatctgaatgccaacgaaaaccagggatttctcatttaatcaccacttttatactgctcgttgcgacaaaatatatgtaaataagtgtttacaaattttgttttcatcattggagagagactttagccccataggaaat
gi|11 : TCCAAG-TTCAAATT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-A-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATATATA-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--T-----AGGAA-ATATTG--CAA--ggtatt
gi|12 : AAG-T-CAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA---------ATG-A-CACA-T-G------------------------------------TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAG--ATGGTG--TAA--ATT-ga
gi|13 : GT-A-T-A----TATATA---AATATA-ATCA-TA--AA---T-ACA--ATATTGA-TAAATC----AA-C-GTGA-AT-G--GAAAT-AGAAA-A
gi|14 : aTTTG-GTC-AAAGACTTCAGAAATAAAA-ATACA--AAGTCTCTTTTGAAGattgtgacaaaaa
gi|15 : ttaacattttatagtaatactaaatataa--T-A-TTCA-T-------ATG-A-CATA-A-G-AGGT-A-C------TATATAT--A-TACA-ATCA-TA--AA---T-ACA--ACATA
gi|17 : aatCTATTAAAA--C-AGTAGTCATCAGATAAAAAAA---TT------CC-GCAGCTCAGTAAT
gi|2 : GTATTAATTTTCAAAGC--ATACACGTACTTTAT----GTTTGATATTAATTTTTTT-----CG--TATAAAA--GTA-TAAACAT-------------GA-TCTTATTTG-GTC-AAAGACT---GAGATAAAA-ATGCAA--AGTCTCTTTTGAAGTGAATAATTAGTAG--TAGACAT-TAGCTAGGTTAC-ACAATTTCAGA-------GT------ATTTGG-TCTATT-AAAAC--AATATCTATCAGGTAAAAAAAAAATT------CC-GCAGCTCAGTAAATGC
gi|20 : --GT------ATTTGGT-CTATTAAAA--C-AATATCCATCAGGTAAAtacacatattccaatttgttgcaattacagagattacagagagattacagagatggcccagtctatccactccagctacctacaggaaaatgatgaacagttgttctaatttgattaaactagttctaagttctttaggcatgtttaccaaataactttcaatcgaaaatattacgccatttctgtataaattggtcattgaggatttgaaaaactacggaagaaacccatctaacaggtacatgtacacaagttgtgctttgttcattccaaatatttgacagttcacatgtgtcaaaaatagttgaatacaagaaaaccagggatttctatttaatccccttttatactgctcgtgtaaatatatgtaaataattttacaaattttgttttcatcactggagagaactttagcccactaggaaat
gi|21 : gtcaaaGTTCAAG-TTCAAGTT-CAATT-T-ATT-CGC-TCAA
gi|22 : caaCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGT
gi|23 : taTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-T
gi|24 : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCA
gi|3 : TTCAAG-TTCA-GTT-C-ATTGT-ATTTCACCTCAAG---A--T-ACTTAG-TTCATTTCATG-A-CATA-A-ACGGGT-A-CTAGGTGTATATC---A-CATC-ATAA-TAGAAA---C-ATA--ACGT-GA-TGAATCCGTCAA-CCGTGG-AT-AGATAAGC-AGAGA-----TG--TAATAATC-ATGA-T--CA-CGGA--CG--AACTAA-ACTATTACACCACATAGTATTTCTCACTCTGTGGAAAAAAC--GTCATCGAC-GCATATACTACATTGTTG-TGACTAATATTCAATAATTTGAAGA-CAT
gi|3 : TATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAA-AT--ATTTTGCTAGGCATGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGA-TTTAGAAATAAAATATGCAACAAGTCTCTTTTGAAGTGAATAATTAGTTGCTTAGACATG--TC-AGGTTACAATAATTTCAGA-TGTT--GT-------CTTGG-TCTATTAAAAACCGAGTAGTCATCAGAT--AAAAAAATTT------CCGGCAGCTCAGTAATTGgtagttggtccatacttacatatatatatacttgtgcagagctattgattcaaagcgcatacactttttatcgtggcacaaatattttgctaggcatgggtataaaatagtagtaaacctcacagcttcagaagagtcttgtttgcgactaaagatttagaaataaaatatgcaacaagtctcttttgaagtgaataattagttgcttagacatgtcaggttacaataatttcagatgttgtcttggtctattaaaaaccgagtagtcatcagataaaaaaatttccggcagctcagtaattg
gi|4 : ttcaagttcagttcattgtatttcacctcaagatacttagttcatttcatgacataaacgggtactaggtgtatatcacatcataatagaaacataacgtgatgaatccgtcaaccgtggatagataagcagagatgtaataatcatgatcacggacgaactaaactattacaccacatagtatttctcactctgtggaaaaaacgtcatcgacgcatatactacattgttgtgactaatattcaataatttgaagacatgtagttggtccatacttacatatatatatacttgtgcagagcGTTCAAGCTTCAAGCT-C-ATT-TTATT-CAC-TCAGTTAAA--T-A-TTCA-T-------ATGCA-CATA-A-G-AGGTTA-C-AG---TAGATA---A-TTTA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAG--AGAGA-ATGGTGA-TAA--ATC-ATGAAT--CA-CGGA--CAGTAA---A-ATTA------CACA-AGTTTTT---GCTCTGGTGAAGAAAC--GT----GACAGCATGT---A-ATTTTTGCTGAT--AAATA--TTAA-TTGAAGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATT--TT--C-AAGCGT-TACAC-----TTAT-GT-----AATAT--ATTTT-C---GTACATGTATAAA--AGT--TAAACATCACA-CTTCAGAACA-TCTTATTTG-GAC-AAAG-CTTTAGAGATAAAA-ATGCA--AAGTCTCTT---GAGTGAATAATTAGTAG--TAG------ATT-AGGTTACAAAAATTTCAAA-------GC------ATTTGGTTCTATT-AAAAC--AATATCTATCAGGT--------ATTTTTTTTCCCCGCAGCTCAGTAAATGC
gi|5 : AAAGACTTTAGAGATAAAA-ATGCAA--AGTCTATTTTGAAGTGAATAATTAGTAG--TAGA----TATT-AGGTTACAA-AATTTCAGAGTATTTGGTACAAAAATTTGG-TCTATT-AAAGC--AATATCTATCTGGTAAAAATAAATTT------C--GCAGCTCAGTAAATGC
gi|6 : AAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CTAA-A-G-TGGT-A-C-AG---TAT------A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAG--ATGGTG--TAA--ATT-ATG-AT--CA-CGGA--CA--AA---ATATTA------CACA-AGATTTT---GCTCTGGTG-AAAAAC--GT----GACAGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATtacacattccattaaataatgatactcatctccaattgtgttgcaattacagagatggcacagtctatcgttcattggagtaccactcaaccaacctatttcaacaggaaaatgattagttgttctaaatttgattaaactagttctatgtttttaggcatgtttataaaataactttcactcgaaaatattgttttgtaaattttgtaacataaagcccttg
gi|6 : TGTAGTATT--TT--CAAGGCG--TACACTT--Tacgttagtcatatatatatattgtagtattttcaaggcgtacactttatgtaatataaa
gi|7 : aagttcaagttcatttattcactcaagtcaatattaatatgactaaagtggtacagtatatataatcataaatataacatagatgaatcaacgtggatgtcagcagagatggtgtaaattatgatcacggacaaaatattacacaagattttgctctggtgaaaaacgtgacagcatgtaaatttttgtgatatatcataattgaagaaatacgttagtcatatatatatatTT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-A-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA-------TA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAG--ATGGTG--TAA--ATT-ATAAA---AA-CGGA--CA--AA---ATTTTA------CATA-AGATTTT---GCTCTGGTG-AAAAAC--GT----GAAAGCCAGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATatgtaatataaa
gi|8 : GTTCATG-TCCAAGTT-A-ATT-T-ATT-CAC-TCAAGTCAA--TCA-TCAATT-------ATG-G-CATA-A-GAAGGT-A-C-AG---TAT------A-TATA-ATCATTA--AA---TAATA--AC-TAGA-TGAATC----AACC-GTGG-AT-G--TCAGCAAGAG--ATGGTG--TAA--ATTAATGAAT--CACCGGA--C---AA---A-ATTATT----CACA-AGTTTTT---GCTCTGGTGAAAACACCAAT----TACGGTATG----A-ATTactttatgtaatatata
gi|9 : a-TTCAAGTTTC-ATT-T-ATT-CACGTC-AGTCAAGTT-A-TTAA-T-------ATG-ACCATA-A-G-AGGT-AGC-AG-----TATA---A-TATATATCA-TG--AAAATT-ATAGTACATAGATTGAATC----AA-C-GTGGTATGG--TCAGC-AGA-A-ATGGTGGTTAA--ATT-ATGAATGGCA-CTGAACCA--AAAT-A-ATTA------CA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTAAATGCTACACATTCCATTAAATAATGATAACTCAGTCTCCAATTTTGTT
Unaligned ( gi|18 ): TTGAAGAAATGCGTTAGTCATATATATATTGTAGTATATTGAA
Unaligned ( gi|19 ): AGAGATGGCACAGTCTATCGTTCATTGGAGAACCACTCCACCA
Alignments
lowQualScore : 111111111 11111111 11 11 22222 222222 111 1 11 1111 1111 1 11 111 1 1 77777777777777777777777777777777777777777777777777777777777777777777777777777 11 11 11 1111 11111111111 11 11111 11 11 1 1 1 1 1 22 3333333333 4444444444444444 3333 11 2222222222
lowQualScore : 3 3 3 3 3 3 6 55 3 3 888888888 4 4 4 4 8 3 3 666666 99999999 3 3 55 666 3 55 4 8888 4 4 4 4 55 2 4 44 0 00 66 5 1 77 5 77 888 55555 888888 8 1 444 0 11 7777 3 7777 8 0 33 444 0 0 77777777777777777777777777777777777777777777777777777777777777777777777777777 33 11 0 33 2222 88888888888 33 77777 0 8 22 22 1 2 8 5 5 5 6 3 7 3 7 1 55 3333333333 99 2222222222222222 6 5555 1 33 3 3333333333 1
lowQualScore : . . . . . . . .. . . ......... . . . . . . . ...... ........ . . .. ... . .. . .... . . . . .. . . .. . .. .. . . .. . .. ... ..... ...... . . ... . .. .... . .... . . .. ... . . ............................................................................. .. .. . .. .... ........... .. ..... . . .. .. . . . . . . . . . . . . .. .......... .. ................ . .... . .. . .......... .
lowQualScore : 6 3 3 1 1 1 2 00 6 6 111111111 0 0 0 0 0 6 6 777777 55555555 6 6 00 444 6 00 0 5555 0 0 0 0 55 5 0 66 1 66 11 0 4 99 7 99 000 22222 333333 0 4 000 6 00 0000 8 4444 0 0 88 000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000 88 00 8 88 4444 55555555555 88 88888 2 8 55 00 0 5 8 0 0 5 7 3 3 3 3 4 44 2222222222 88 2222222222222222 7 3333 3 33 2 3333333333 0
consensus : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA---A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAGA-ATGGTG--TAA--ATT-ATGAAT--CA-CGGA--CA--AA---A-ATTA------CACA-AGTTTTT---GCTCTGGTGAAAAAAC--GT----GACAGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACNTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGACTTTAGAGATAAAA-ATGCAA-AAGTCTCTTTTGAAGTGAATAATTAGTAGCTTAGACATGTATC-AGGTTACAATAATTTCAGA-TGTT--GT------ATTTGG-TCTATTAAAA--C-AGTATCCATCAGGTAAAAAAAAATTT-------CC-GCAGCTCAGTAANTGC
Reference ( family-1354 ) : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA---A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAGA-ATGGTG--TAA--ATT-ATGAAT--CA-CGGA--CA--AA---A-ATTA------CACA-AGTTTTT---GCTCTGGTGAAAAAAC--GT----GACAGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACNTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGACTTTAGAGATAAAA-ATGCAA-AAGTCTCTTTTGAAGTGAATAATTAGTAGCTTAGACATGTATC-AGGTTACAATAATTTCAGA-TGTT--GT------ATTTGG-TCTATTAAAAACC-AGTATCCATCAGGTAAAAAAAAATTT-------CC-GCAGCTCAGTAANTGC
gi|1 : TATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAA-AT--ATTTTGCTAGGCATGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGA-TTTAGAAATAAAATATGCAACAAGTCTCTTTTGAAGTGAATAATTAGTTGCTTAGACATG--TC-AGGTTACAATAATTTCAGA-TGTT--GT-------CTTGG-TCTATTAAAAACCGAGTAGTCATCAGAT--AAAAAAATTT-------CCGGCAGCTCAGTAATTGC
gi|10 : AG-TTGAA--T-T-ATT-A-ATT-CGC-TCAAGTC-A--T---TTCA-T-------ATA-A-CATATATG-AGGT-G-C-AG---TGTA--------ATA-ACCT-TA--AA---T-AAA--ACATAGA-T----------A-C-GTA----------AGC-AGAGATAT-GTA--AAA--ACG-ATCCAT--CA-GTGA--CA--Ataccggattccattaaatatatgatacctcagtcttcctaattttgttgcaattacagatacgctacagtctatcgttcattggcgagtaccacttcatgctacccaatcaacaggaaaaatgatgattagtcgctggttgtcgttctaaattttgatttaaactagtggtcatatacattttgagcgcatgtttatcaaagagcttatcaatggacaaaatattgtttgtcgtaaaattctgctaacataagtcctttgtcgaatcatattatttcactatgccatgtttcataaaaatttggtctttaaggacttgacaaattacgaagaaatccatcttagctggtgacatggaagtgtgtagcttggttacatttcaaactttgacactcctcatgagtgtcacaagaatattatctgaatgccaacgaaaaccagggatttctcatttaatcaccacttttatactgctcgttgcgacaaaatatatgtaaataagtgtttacaaattttgttttcatcattggagagagactttagccccataggaaat
gi|11 : TCCAAG-TTCAAATT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-A-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATATATA-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--T-----AGGAA-ATATTG--CAA--ggtatt
gi|12 : AAG-T-CAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA---------ATG-A-CACA-T-G------------------------------------TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAG--ATGGTG--TAA--ATT-ga
gi|13 : GT-A-T-A----TATATA---AATATA-ATCA-TA--AA---T-ACA--ATATTGA-TAAATC----AA-C-GTGA-AT-G--GAAAT-AGAAA-A
gi|14 : aAAAGACTTCAGAAATAAAA-ATAC-A-AAGTCTCTTTTGAAGattgtgacaaaaa
gi|15 : ttaacattttatagtaatactaaatataatttggtc--T-A-TTCA-T-------ATG-A-CATA-A-G-AGGT-A-C------TATATAT--A-TACA-ATCA-TA--AA---T-ACA--ACATA
gi|17 : aatCTATTAAAA--C-AGTAGTCATCAGATAAAAAAA---TT-------CC-GCAGCTCAGTAAT
gi|2 : GTATTAATTTTCAAAGC--ATACACGTACTTTAT----GTTTGATATTAATTTTTTT-----CG--TATAAAA--GTA-TAAACAT-------------GA-TCTTATTTG-GTC-AAAGACT---GAGATAAAA-ATGCAA-A-GTCTCTTTTGAAGTGAATAATTAGTAG--TAGACAT-TAGCTAGGTTACA-CAATTTCAGA-------GT------ATTTGG-TCTATTAAAA--C-AATATCTATCAGGTAAAAAAAAAATT-------CC-GCAGCTCAGTAAATGC
gi|20 : --GT------ATTTGG-TCTATTAAAA--C-AATATCCATCAGGTAAAtacacatattccaatttgttgcaattacagagattacagagagattacagagatggcccagtctatccactccagctacctacaggaaaatgatgaacagttgttctaatttgattaaactagttctaagttctttaggcatgtttaccaaataactttcaatcgaaaatattacgccatttctgtataaattggtcattgaggatttgaaaaactacggaagaaacccatctaacaggtacatgtacacaagttgtgctttgttcattccaaatatttgacagttcacatgtgtcaaaaatagttgaatacaagaaaaccagggatttctatttaatccccttttatactgctcgtgtaaatatatgtaaataattttacaaattttgttttcatcactggagagaactttagcccactaggaaat
gi|21 : gtcaaaGTTCAAG-TTCAAGTT-CAATT-T-ATT-CGC-TCAA
gi|22 : caaCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGT
gi|23 : taTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-T
gi|24 : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCA
gi|3 : TTCAAG-TTCA-GTT-C-ATTGT-ATTTCACCTCAAG---A--T-ACTTAG-TTCATTTCATG-A-CATA-A-ACGGGT-A-CTAGGTGTATATC---A-CATC-ATAA-TAGAAA---C-ATA--ACGT-GA-TGAATCCGTCAA-CCGTGG-AT-AGATAAGC-AGAGA-----TG--TAATAATC-ATGA-T--CA-CGGA--CG--AACTAA-ACTATTACACCACATAGTATTTCTCACTCTGTGGAAAAAAC--GTCATCGAC-GCATATACTACATTGTTG-TGACTAATATTCAATAATTTGAAGA-CAT
gi|3 : TATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAA-AT--ATTTTGCTAGGCATGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGA-TTTAGAAATAAAATATGCAACAAGTCTCTTTTGAAGTGAATAATTAGTTGCTTAGACATG--TC-AGGTTACAATAATTTCAGA-TGTT--GT-------CTTGG-TCTATTAAAAACCGAGTAGTCATCAGAT--AAAAAAATTT-------CCGGCAGCTCAGTAATTGgtagttggtccatacttacatatatatatacttgtgcagagctattgattcaaagcgcatacactttttatcgtggcacaaatattttgctaggcatgggtataaaatagtagtaaacctcacagcttcagaagagtcttgtttgcgactaaagatttagaaataaaatatgcaacaagtctcttttgaagtgaataattagttgcttagacatgtcaggttacaataatttcagatgttgtcttggtctattaaaaaccgagtagtcatcagataaaaaaatttccggcagctcagtaattg
gi|4 : ttcaagttcagttcattgtatttcacctcaagatacttagttcatttcatgacataaacgggtactaggtgtatatcacatcataatagaaacataacgtgatgaatccgtcaaccgtggatagataagcagagatgtaataatcatgatcacggacgaactaaactattacaccacatagtatttctcactctgtggaaaaaacgtcatcgacgcatatactacattgttgtgactaatattcaataatttgaagacatgtagttggtccatacttacatatatatatacttgtgcagagcGTTCAAGCTTCAAGCT-C-ATT-TTATT-CAC-TCAGTTAAA--T-A-TTCA-T-------ATGCA-CATA-A-G-AGGTTA-C-AG---TAGATA---A-TTTA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAG--AGAGA-ATGGTGA-TAA--ATC-ATGAAT--CA-CGGA--CAGTAA---A-ATTA------CACA-AGTTTTT---GCTCTGGTGAAGAAAC--GT----GACAGCATGT---A-ATTTTTGCTGAT--AAATA--TTAA-TTGAAGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATT--TT--C-AAGCGT-TACAC-----TTAT-GT-----AATAT--ATTTT-C---GTACATGTATAAA--AGT--TAAACATCACA-CTTCAGAACA-TCTTATTTG-GAC-AAAG-CTTTAGAGATAAAA-ATGC-A-AAGTCTCTT---GAGTGAATAATTAGTAG--TAG------ATT-AGGTTACAAAAATTTCAAA-------GC------ATTTGGTTCTATTAAAA--C-AATATCTATCAGGT--------ATTTTTTTTCCCC-GCAGCTCAGTAAATGC
gi|5 : AAAGACTTTAGAGATAAAA-ATGCAA-A-GTCTATTTTGAAGTGAATAATTAGTAG--TAGA----TATT-AGGTTACAA-AATTTCAGAGTATTTGGTACAAAAATTTGG-TCTATTAAAG--C-AATATCTATCTGGTAAAAATAAATTT--------C-GCAGCTCAGTAAATGC
gi|6 : AAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CTAA-A-G-TGGT-A-C-AG---TAT------A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAG--ATGGTG--TAA--ATT-ATG-AT--CA-CGGA--CA--AA---ATATTA------CACA-AGATTTT---GCTCTGGTG-AAAAAC--GT----GACAGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATtacacattccattaaataatgatactcatctccaattgtgttgcaattacagagatggcacagtctatcgttcattggagtaccactcaaccaacctatttcaacaggaaaatgattagttgttctaaatttgattaaactagttctatgtttttaggcatgtttataaaataactttcactcgaaaatattgttttgtaaattttgtaacataaagcccttg
gi|6 : TGTAGTATT--TT--CAAGGCG--TACACTT--Tacgttagtcatatatatatattgtagtattttcaaggcgtacactttatgtaatataaa
gi|7 : aagttcaagttcatttattcactcaagtcaatattaatatgactaaagtggtacagtatatataatcataaatataacatagatgaatcaacgtggatgtcagcagagatggtgtaaattatgatcacggacaaaatattacacaagattttgctctggtgaaaaacgtgacagcatgtaaatttttgtgatatatcataattgaagaaatacgttagtcatatatatatatTT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-A-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA-------TA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAG--ATGGTG--TAA--ATT-ATAAA---AA-CGGA--CA--AA---ATTTTA------CATA-AGATTTT---GCTCTGGTG-AAAAAC--GT----GAAAGCCAGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATatgtaatataaa
gi|8 : GTTCATG-TCCAAGTT-A-ATT-T-ATT-CAC-TCAAGTCAA--TCA-TCAATT-------ATG-G-CATA-A-GAAGGT-A-C-AG---TAT------A-TATA-ATCATTA--AA---TAATA--AC-TAGA-TGAATC----AACC-GTGG-AT-G--TCAGCAAGAG--ATGGTG--TAA--ATTAATGAAT--CACCGGA--C---AA---A-ATTATT----CACA-AGTTTTT---GCTCTGGTGAAAACACCAAT----TACGGTATG----A-ATTactttatgtaatatata
gi|9 : a-TTCAAGTTTC-ATT-T-ATT-CACGTC-AGTCAAGTT-A-TTAA-T-------ATG-ACCATA-A-G-AGGT-AGC-AG-----TATA---A-TATATATCA-TG--AAAATT-ATAGTACATAGATTGAATC----AA-C-GTGGTATGG--TCAGC-AGA-A-ATGGTGGTTAA--ATT-ATGAATGGCA-CTGAACCA--AAAT-A-ATTA------CA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTAAATGCTACACATTCCATTAAATAATGATAACTCAGTCTCCAATTTTGTT
Unaligned ( gi|18 ): TTGAAGAAATGCGTTAGTCATATATATATTGTAGTATATTGAA
Unaligned ( gi|19 ): AGAGATGGCACAGTCTATCGTTCATTGGAGAACCACTCCACCA
Alignments
lowQualScore : 111111111 11111111 11 11 22222 222222 111 1 11 1111 1111 1 11 111 1 1 77777777777777777777777777777777777777777777777777777777777777777777777777777 11 11 11 1111 11111111111 11 11111 11 11 1 1 1 1 1 22 3333333333 4444444444444444 1 11 11 2222222222
lowQualScore : 3 3 3 3 3 3 6 55 3 3 888888888 4 4 4 4 8 3 3 666666 99999999 3 3 55 666 3 55 4 8888 4 4 4 4 55 2 4 44 0 00 66 5 1 77 5 77 888 55555 888888 8 1 444 0 11 7777 3 7777 8 0 33 444 0 0 77777777777777777777777777777777777777777777777777777777777777777777777777777 33 11 0 33 2222 88888888888 33 77777 0 8 22 22 1 2 8 5 5 5 6 3 7 3 7 1 55 3333333333 99 2222222222222222 6 1 55 1 33 3 3333333333 1
lowQualScore : . . . . . . . .. . . ......... . . . . . . . ...... ........ . . .. ... . .. . .... . . . . .. . . .. . .. .. . . .. . .. ... ..... ...... . . ... . .. .... . .... . . .. ... . . ............................................................................. .. .. . .. .... ........... .. ..... . . .. .. . . . . . . . . . . . . .. .......... .. ................ . . .. . .. . .......... .
lowQualScore : 6 3 3 1 1 1 2 00 6 6 111111111 0 0 0 0 0 6 6 777777 55555555 6 6 00 444 6 00 0 5555 0 0 0 0 55 5 0 66 1 66 11 0 4 99 7 99 000 22222 333333 0 4 000 6 00 0000 8 4444 0 0 88 000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000 88 00 8 88 4444 55555555555 88 88888 2 8 55 00 0 5 8 0 0 5 7 3 3 3 3 4 44 2222222222 88 2222222222222222 7 4 77 3 33 2 3333333333 0
consensus : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA---A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAGA-ATGGTG--TAA--ATT-ATGAAT--CA-CGGA--CA--AA---A-ATTA------CACA-AGTTTTT---GCTCTGGTGAAAAAAC--GT----GACAGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACNTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGACTTTAGAGATAAAA-ATGCAA-AAGTCTCTTTTGAAGTGAATAATTAGTAGCTTAGACATGTATC-AGGTTACAATAATTTCAGA-TGTT--GTA------TTTGG-TCTATT-AAAAC--AGTATCCATCAGGTAAAAAAAAATTT-------CC-GCAGCTCAGTAANTGC
Reference ( family-1354 ) : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA---A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAGA-ATGGTG--TAA--ATT-ATGAAT--CA-CGGA--CA--AA---A-ATTA------CACA-AGTTTTT---GCTCTGGTGAAAAAAC--GT----GACAGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACNTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGACTTTAGAGATAAAA-ATGCAA-AAGTCTCTTTTGAAGTGAATAATTAGTAGCTTAGACATGTATC-AGGTTACAATAATTTCAGA-TGTT--GTA------TTTGG-TCTATT-AAAAC--AGTATCCATCAGGTAAAAAAAAATTT-------CC-GCAGCTCAGTAANTGC
gi|1 : TATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAA-AT--ATTTTGCTAGGCATGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGA-TTTAGAAATAAAATATGCAACAAGTCTCTTTTGAAGTGAATAATTAGTTGCTTAGACATG--TC-AGGTTACAATAATTTCAGA-TGTT--GT-------CTTGG-TCTATTAAAAACCGAGTAGTCATCAGAT--AAAAAAATTT-------CCGGCAGCTCAGTAATTGC
gi|10 : AG-TTGAA--T-T-ATT-A-ATT-CGC-TCAAGTC-A--T---TTCA-T-------ATA-A-CATATATG-AGGT-G-C-AG---TGTA--------ATA-ACCT-TA--AA---T-AAA--ACATAGA-T----------A-C-GTA----------AGC-AGAGATAT-GTA--AAA--ACG-ATCCAT--CA-GTGA--CA--Ataccggattccattaaatatatgatacctcagtcttcctaattttgttgcaattacagatacgctacagtctatcgttcattggcgagtaccacttcatgctacccaatcaacaggaaaaatgatgattagtcgctggttgtcgttctaaattttgatttaaactagtggtcatatacattttgagcgcatgtttatcaaagagcttatcaatggacaaaatattgtttgtcgtaaaattctgctaacataagtcctttgtcgaatcatattatttcactatgccatgtttcataaaaatttggtctttaaggacttgacaaattacgaagaaatccatcttagctggtgacatggaagtgtgtagcttggttacatttcaaactttgacactcctcatgagtgtcacaagaatattatctgaatgccaacgaaaaccagggatttctcatttaatcaccacttttatactgctcgttgcgacaaaatatatgtaaataagtgtttacaaattttgttttcatcattggagagagactttagccccataggaaat
gi|11 : TCCAAG-TTCAAATT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-A-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATATATA-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--T-----AGGAA-ATATTG--CAA--ggtatt
gi|12 : AAG-T-CAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA---------ATG-A-CACA-T-G------------------------------------TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAG--ATGGTG--TAA--ATT-ga
gi|13 : GT-A-T-A----TATATA---AATATA-ATCA-TA--AA---T-ACA--ATATTGA-TAAATC----AA-C-GTGA-AT-G--GAAAT-AGAAA-A
gi|14 : aAAAGACTTCAGAAATAAAA-ATAC-A-AAGTCTCTTTTGAAGattgtgacaaaaa
gi|15 : ttaacattttatagtaatactaaatataatttggtc--T-A-TTCA-T-------ATG-A-CATA-A-G-AGGT-A-C------TATATAT--A-TACA-ATCA-TA--AA---T-ACA--ACATA
gi|17 : aatCTATT-AAAAC--AGTAGTCATCAGATAAAAAAA---TT-------CC-GCAGCTCAGTAAT
gi|2 : GTATTAATTTTCAAAGC--ATACACGTACTTTAT----GTTTGATATTAATTTTTTT-----CG--TATAAAA--GTA-TAAACAT-------------GA-TCTTATTTG-GTC-AAAGACT---GAGATAAAA-ATGCAA-A-GTCTCTTTTGAAGTGAATAATTAGTAG--TAGACAT-TAGCTAGGTTACA-CAATTTCAGA-------GTA------TTTGG-TCTATT-AAAAC--AATATCTATCAGGTAAAAAAAAAATT-------CC-GCAGCTCAGTAAATGC
gi|20 : --GTA------TTTGG-TCTATT-AAAAC--AATATCCATCAGGTAAAtacacatattccaatttgttgcaattacagagattacagagagattacagagatggcccagtctatccactccagctacctacaggaaaatgatgaacagttgttctaatttgattaaactagttctaagttctttaggcatgtttaccaaataactttcaatcgaaaatattacgccatttctgtataaattggtcattgaggatttgaaaaactacggaagaaacccatctaacaggtacatgtacacaagttgtgctttgttcattccaaatatttgacagttcacatgtgtcaaaaatagttgaatacaagaaaaccagggatttctatttaatccccttttatactgctcgtgtaaatatatgtaaataattttacaaattttgttttcatcactggagagaactttagcccactaggaaat
gi|21 : gtcaaaGTTCAAG-TTCAAGTT-CAATT-T-ATT-CGC-TCAA
gi|22 : caaCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGT
gi|23 : taTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-T
gi|24 : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCA
gi|3 : TTCAAG-TTCA-GTT-C-ATTGT-ATTTCACCTCAAG---A--T-ACTTAG-TTCATTTCATG-A-CATA-A-ACGGGT-A-CTAGGTGTATATC---A-CATC-ATAA-TAGAAA---C-ATA--ACGT-GA-TGAATCCGTCAA-CCGTGG-AT-AGATAAGC-AGAGA-----TG--TAATAATC-ATGA-T--CA-CGGA--CG--AACTAA-ACTATTACACCACATAGTATTTCTCACTCTGTGGAAAAAAC--GTCATCGAC-GCATATACTACATTGTTG-TGACTAATATTCAATAATTTGAAGA-CAT
gi|3 : TATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAA-AT--ATTTTGCTAGGCATGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGA-TTTAGAAATAAAATATGCAACAAGTCTCTTTTGAAGTGAATAATTAGTTGCTTAGACATG--TC-AGGTTACAATAATTTCAGA-TGTT--GT-------CTTGG-TCTATTAAAAACCGAGTAGTCATCAGAT--AAAAAAATTT-------CCGGCAGCTCAGTAATTGgtagttggtccatacttacatatatatatacttgtgcagagctattgattcaaagcgcatacactttttatcgtggcacaaatattttgctaggcatgggtataaaatagtagtaaacctcacagcttcagaagagtcttgtttgcgactaaagatttagaaataaaatatgcaacaagtctcttttgaagtgaataattagttgcttagacatgtcaggttacaataatttcagatgttgtcttggtctattaaaaaccgagtagtcatcagataaaaaaatttccggcagctcagtaattg
gi|4 : ttcaagttcagttcattgtatttcacctcaagatacttagttcatttcatgacataaacgggtactaggtgtatatcacatcataatagaaacataacgtgatgaatccgtcaaccgtggatagataagcagagatgtaataatcatgatcacggacgaactaaactattacaccacatagtatttctcactctgtggaaaaaacgtcatcgacgcatatactacattgttgtgactaatattcaataatttgaagacatgtagttggtccatacttacatatatatatacttgtgcagagcGTTCAAGCTTCAAGCT-C-ATT-TTATT-CAC-TCAGTTAAA--T-A-TTCA-T-------ATGCA-CATA-A-G-AGGTTA-C-AG---TAGATA---A-TTTA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAG--AGAGA-ATGGTGA-TAA--ATC-ATGAAT--CA-CGGA--CAGTAA---A-ATTA------CACA-AGTTTTT---GCTCTGGTGAAGAAAC--GT----GACAGCATGT---A-ATTTTTGCTGAT--AAATA--TTAA-TTGAAGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATT--TT--C-AAGCGT-TACAC-----TTAT-GT-----AATAT--ATTTT-C---GTACATGTATAAA--AGT--TAAACATCACA-CTTCAGAACA-TCTTATTTG-GAC-AAAG-CTTTAGAGATAAAA-ATGC-A-AAGTCTCTT---GAGTGAATAATTAGTAG--TAG------ATT-AGGTTACAAAAATTTCAAA-------GCA------TTTGGTTCTATT-AAAAC--AATATCTATCAGGT--------ATTTTTTTTCCCC-GCAGCTCAGTAAATGC
gi|5 : AAAGACTTTAGAGATAAAA-ATGCAA-A-GTCTATTTTGAAGTGAATAATTAGTAG--TAGA----TATT-AGGTTACAA-AATTTCAGAGTATTTGGTACAAAAATTTGG-TCTATT-AAAGC--AATATCTATCTGGTAAAAATAAATTT--------C-GCAGCTCAGTAAATGC
gi|6 : AAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CTAA-A-G-TGGT-A-C-AG---TAT------A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAG--ATGGTG--TAA--ATT-ATG-AT--CA-CGGA--CA--AA---ATATTA------CACA-AGATTTT---GCTCTGGTG-AAAAAC--GT----GACAGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATtacacattccattaaataatgatactcatctccaattgtgttgcaattacagagatggcacagtctatcgttcattggagtaccactcaaccaacctatttcaacaggaaaatgattagttgttctaaatttgattaaactagttctatgtttttaggcatgtttataaaataactttcactcgaaaatattgttttgtaaattttgtaacataaagcccttg
gi|6 : TGTAGTATT--TT--CAAGGCG--TACACTT--Tacgttagtcatatatatatattgtagtattttcaaggcgtacactttatgtaatataaa
gi|7 : aagttcaagttcatttattcactcaagtcaatattaatatgactaaagtggtacagtatatataatcataaatataacatagatgaatcaacgtggatgtcagcagagatggtgtaaattatgatcacggacaaaatattacacaagattttgctctggtgaaaaacgtgacagcatgtaaatttttgtgatatatcataattgaagaaatacgttagtcatatatatatatTT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-A-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA-------TA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAG--ATGGTG--TAA--ATT-ATAAA---AA-CGGA--CA--AA---ATTTTA------CATA-AGATTTT---GCTCTGGTG-AAAAAC--GT----GAAAGCCAGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATatgtaatataaa
gi|8 : GTTCATG-TCCAAGTT-A-ATT-T-ATT-CAC-TCAAGTCAA--TCA-TCAATT-------ATG-G-CATA-A-GAAGGT-A-C-AG---TAT------A-TATA-ATCATTA--AA---TAATA--AC-TAGA-TGAATC----AACC-GTGG-AT-G--TCAGCAAGAG--ATGGTG--TAA--ATTAATGAAT--CACCGGA--C---AA---A-ATTATT----CACA-AGTTTTT---GCTCTGGTGAAAACACCAAT----TACGGTATG----A-ATTactttatgtaatatata
gi|9 : a-TTCAAGTTTC-ATT-T-ATT-CACGTC-AGTCAAGTT-A-TTAA-T-------ATG-ACCATA-A-G-AGGT-AGC-AG-----TATA---A-TATATATCA-TG--AAAATT-ATAGTACATAGATTGAATC----AA-C-GTGGTATGG--TCAGC-AGA-A-ATGGTGGTTAA--ATT-ATGAATGGCA-CTGAACCA--AAAT-A-ATTA------CA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTAAATGCTACACATTCCATTAAATAATGATAACTCAGTCTCCAATTTTGTT
Unaligned ( gi|18 ): TTGAAGAAATGCGTTAGTCATATATATATTGTAGTATATTGAA
Unaligned ( gi|19 ): AGAGATGGCACAGTCTATCGTTCATTGGAGAACCACTCCACCA
Alignments
lowQualScore : 111111111 11111111 11 11 22222 222222 111 1 11 1111 1111 1 11 111 1 1 77777777777777777777777777777777777777777777777777777777777777777777777777777 11 11 11 1111 11111111111 11 11111 11 11 1 1 1 1 1 22 3333333333 4444444444444444 1 11 11 2222222222
lowQualScore : 3 3 3 3 3 3 6 55 3 3 888888888 4 4 4 4 8 3 3 666666 99999999 3 3 55 666 3 55 4 8888 4 4 4 4 55 2 4 44 0 00 66 5 1 77 5 77 888 55555 888888 8 1 444 0 11 7777 3 7777 8 0 33 444 0 0 77777777777777777777777777777777777777777777777777777777777777777777777777777 33 11 0 33 2222 88888888888 33 77777 0 8 22 22 1 2 8 5 5 5 6 3 7 3 7 1 55 3333333333 99 2222222222222222 6 1 55 1 33 3 3333333333 1
lowQualScore : . . . . . . . .. . . ......... . . . . . . . ...... ........ . . .. ... . .. . .... . . . . .. . . .. . .. .. . . .. . .. ... ..... ...... . . ... . .. .... . .... . . .. ... . . ............................................................................. .. .. . .. .... ........... .. ..... . . .. .. . . . . . . . . . . . . .. .......... .. ................ . . .. . .. . .......... .
lowQualScore : 6 3 3 1 1 1 2 00 6 6 111111111 0 0 0 0 0 6 6 777777 55555555 6 6 00 444 6 00 0 5555 0 0 0 0 55 5 0 66 1 66 11 0 4 99 7 99 000 22222 333333 0 4 000 6 00 0000 8 4444 0 0 88 000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000 88 00 8 88 4444 55555555555 88 88888 2 8 55 00 0 5 8 0 0 5 7 3 3 3 3 4 44 2222222222 88 2222222222222222 7 4 77 3 33 2 3333333333 0
consensus : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA---A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAGA-ATGGTG--TAA--ATT-ATGAAT--CA-CGGA--CA--AA---A-ATTA------CACA-AGTTTTT---GCTCTGGTGAAAAAAC--GT----GACAGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACNTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGACTTTAGAGATAAAA-ATGCAA-AAGTCTCTTTTGAAGTGAATAATTAGTAGCTTAGACATGTATC-AGGTTACAATAATTTCAGA-TGTT--GTA------TTTGG-TCTATT-AAAAC--AGTATCCATCAGGTAAAAAAAAATTT-------CC-GCAGCTCAGTAANTGC
Reference ( family-1354 ) : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA---A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAGA-ATGGTG--TAA--ATT-ATGAAT--CA-CGGA--CA--AA---A-ATTA------CACA-AGTTTTT---GCTCTGGTGAAAAAAC--GT----GACAGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACNTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGACTTTAGAGATAAAA-ATGCAA-AAGTCTCTTTTGAAGTGAATAATTAGTAGCTTAGACATGTATC-AGGTTACAATAATTTCAGA-TGTT--GTA------TTTGG-TCTATT-AAAAC--AGTATCCATCAGGTAAAAAAAAATTT-------CC-GCAGCTCAGTAANTGC
gi|1 : TATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAA-AT--ATTTTGCTAGGCATGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGA-TTTAGAAATAAAATATGCAACAAGTCTCTTTTGAAGTGAATAATTAGTTGCTTAGACATG--TC-AGGTTACAATAATTTCAGA-TGTT--GT-------CTTGG-TCTATTAAAAACCGAGTAGTCATCAGAT--AAAAAAATTT-------CCGGCAGCTCAGTAATTGC
gi|10 : AG-TTGAA--T-T-ATT-A-ATT-CGC-TCAAGTC-A--T---TTCA-T-------ATA-A-CATATATG-AGGT-G-C-AG---TGTA--------ATA-ACCT-TA--AA---T-AAA--ACATAGA-T----------A-C-GTA----------AGC-AGAGATAT-GTA--AAA--ACG-ATCCAT--CA-GTGA--CA--Ataccggattccattaaatatatgatacctcagtcttcctaattttgttgcaattacagatacgctacagtctatcgttcattggcgagtaccacttcatgctacccaatcaacaggaaaaatgatgattagtcgctggttgtcgttctaaattttgatttaaactagtggtcatatacattttgagcgcatgtttatcaaagagcttatcaatggacaaaatattgtttgtcgtaaaattctgctaacataagtcctttgtcgaatcatattatttcactatgccatgtttcataaaaatttggtctttaaggacttgacaaattacgaagaaatccatcttagctggtgacatggaagtgtgtagcttggttacatttcaaactttgacactcctcatgagtgtcacaagaatattatctgaatgccaacgaaaaccagggatttctcatttaatcaccacttttatactgctcgttgcgacaaaatatatgtaaataagtgtttacaaattttgttttcatcattggagagagactttagccccataggaaat
gi|11 : TCCAAG-TTCAAATT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-A-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATATATA-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--T-----AGGAA-ATATTG--CAA--ggtatt
gi|12 : AAG-T-CAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA---------ATG-A-CACA-T-G------------------------------------TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAG--ATGGTG--TAA--ATT-ga
gi|13 : GT-A-T-A----TATATA---AATATA-ATCA-TA--AA---T-ACA--ATATTGA-TAAATC----AA-C-GTGA-AT-G--GAAAT-AGAAA-A
gi|14 : aAAAGACTTCAGAAATAAAA-ATAC-A-AAGTCTCTTTTGAAGattgtgacaaaaa
gi|15 : ttaacattttatagtaatactaaatataatttggtc--T-A-TTCA-T-------ATG-A-CATA-A-G-AGGT-A-C------TATATAT--A-TACA-ATCA-TA--AA---T-ACA--ACATA
gi|17 : aatCTATT-AAAAC--AGTAGTCATCAGATAAAAAAA---TT-------CC-GCAGCTCAGTAAT
gi|2 : GTATTAATTTTCAAAGC--ATACACGTACTTTAT----GTTTGATATTAATTTTTTT-----CG--TATAAAA--GTA-TAAACAT-------------GA-TCTTATTTG-GTC-AAAGACT---GAGATAAAA-ATGCAA-A-GTCTCTTTTGAAGTGAATAATTAGTAG--TAGACAT-TAGCTAGGTTACA-CAATTTCAGA-------GTA------TTTGG-TCTATT-AAAAC--AATATCTATCAGGTAAAAAAAAAATT-------CC-GCAGCTCAGTAAATGC
gi|20 : --GTA------TTTGG-TCTATT-AAAAC--AATATCCATCAGGTAAAtacacatattccaatttgttgcaattacagagattacagagagattacagagatggcccagtctatccactccagctacctacaggaaaatgatgaacagttgttctaatttgattaaactagttctaagttctttaggcatgtttaccaaataactttcaatcgaaaatattacgccatttctgtataaattggtcattgaggatttgaaaaactacggaagaaacccatctaacaggtacatgtacacaagttgtgctttgttcattccaaatatttgacagttcacatgtgtcaaaaatagttgaatacaagaaaaccagggatttctatttaatccccttttatactgctcgtgtaaatatatgtaaataattttacaaattttgttttcatcactggagagaactttagcccactaggaaat
gi|21 : gtcaaaGTTCAAG-TTCAAGTT-CAATT-T-ATT-CGC-TCAA
gi|22 : caaCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGT
gi|23 : taTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-T
gi|24 : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCA
gi|3 : TTCAAG-TTCA-GTT-C-ATTGT-ATTTCACCTCAAG---A--T-ACTTAG-TTCATTTCATG-A-CATA-A-ACGGGT-A-CTAGGTGTATATC---A-CATC-ATAA-TAGAAA---C-ATA--ACGT-GA-TGAATCCGTCAA-CCGTGG-AT-AGATAAGC-AGAGA-----TG--TAATAATC-ATGA-T--CA-CGGA--CG--AACTAA-ACTATTACACCACATAGTATTTCTCACTCTGTGGAAAAAAC--GTCATCGAC-GCATATACTACATTGTTG-TGACTAATATTCAATAATTTGAAGA-CAT
gi|3 : TATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAA-AT--ATTTTGCTAGGCATGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGA-TTTAGAAATAAAATATGCAACAAGTCTCTTTTGAAGTGAATAATTAGTTGCTTAGACATG--TC-AGGTTACAATAATTTCAGA-TGTT--GT-------CTTGG-TCTATTAAAAACCGAGTAGTCATCAGAT--AAAAAAATTT-------CCGGCAGCTCAGTAATTGgtagttggtccatacttacatatatatatacttgtgcagagctattgattcaaagcgcatacactttttatcgtggcacaaatattttgctaggcatgggtataaaatagtagtaaacctcacagcttcagaagagtcttgtttgcgactaaagatttagaaataaaatatgcaacaagtctcttttgaagtgaataattagttgcttagacatgtcaggttacaataatttcagatgttgtcttggtctattaaaaaccgagtagtcatcagataaaaaaatttccggcagctcagtaattg
gi|4 : ttcaagttcagttcattgtatttcacctcaagatacttagttcatttcatgacataaacgggtactaggtgtatatcacatcataatagaaacataacgtgatgaatccgtcaaccgtggatagataagcagagatgtaataatcatgatcacggacgaactaaactattacaccacatagtatttctcactctgtggaaaaaacgtcatcgacgcatatactacattgttgtgactaatattcaataatttgaagacatgtagttggtccatacttacatatatatatacttgtgcagagcGTTCAAGCTTCAAGCT-C-ATT-TTATT-CAC-TCAGTTAAA--T-A-TTCA-T-------ATGCA-CATA-A-G-AGGTTA-C-AG---TAGATA---A-TTTA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAG--AGAGA-ATGGTGA-TAA--ATC-ATGAAT--CA-CGGA--CAGTAA---A-ATTA------CACA-AGTTTTT---GCTCTGGTGAAGAAAC--GT----GACAGCATGT---A-ATTTTTGCTGAT--AAATA--TTAA-TTGAAGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATT--TT--C-AAGCGT-TACAC-----TTAT-GT-----AATAT--ATTTT-C---GTACATGTATAAA--AGT--TAAACATCACA-CTTCAGAACA-TCTTATTTG-GAC-AAAG-CTTTAGAGATAAAA-ATGC-A-AAGTCTCTT---GAGTGAATAATTAGTAG--TAG------ATT-AGGTTACAAAAATTTCAAA-------GCA------TTTGGTTCTATT-AAAAC--AATATCTATCAGGT--------ATTTTTTTTCCCC-GCAGCTCAGTAAATGC
gi|5 : AAAGACTTTAGAGATAAAA-ATGCAA-A-GTCTATTTTGAAGTGAATAATTAGTAG--TAGA----TATT-AGGTTACAA-AATTTCAGAGTATTTGGTACAAAAATTTGG-TCTATT-AAAGC--AATATCTATCTGGTAAAAATAAATTT--------C-GCAGCTCAGTAAATGC
gi|6 : AAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CTAA-A-G-TGGT-A-C-AG---TAT------A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAG--ATGGTG--TAA--ATT-ATG-AT--CA-CGGA--CA--AA---ATATTA------CACA-AGATTTT---GCTCTGGTG-AAAAAC--GT----GACAGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATtacacattccattaaataatgatactcatctccaattgtgttgcaattacagagatggcacagtctatcgttcattggagtaccactcaaccaacctatttcaacaggaaaatgattagttgttctaaatttgattaaactagttctatgtttttaggcatgtttataaaataactttcactcgaaaatattgttttgtaaattttgtaacataaagcccttg
gi|6 : TGTAGTATT--TT--CAAGGCG--TACACTT--Tacgttagtcatatatatatattgtagtattttcaaggcgtacactttatgtaatataaa
gi|7 : aagttcaagttcatttattcactcaagtcaatattaatatgactaaagtggtacagtatatataatcataaatataacatagatgaatcaacgtggatgtcagcagagatggtgtaaattatgatcacggacaaaatattacacaagattttgctctggtgaaaaacgtgacagcatgtaaatttttgtgatatatcataattgaagaaatacgttagtcatatatatatatTT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-A-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA-------TA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAG--ATGGTG--TAA--ATT-ATAAA---AA-CGGA--CA--AA---ATTTTA------CATA-AGATTTT---GCTCTGGTG-AAAAAC--GT----GAAAGCCAGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATatgtaatataaa
gi|8 : GTTCATG-TCCAAGTT-A-ATT-T-ATT-CAC-TCAAGTCAA--TCA-TCAATT-------ATG-G-CATA-A-GAAGGT-A-C-AG---TAT------A-TATA-ATCATTA--AA---TAATA--AC-TAGA-TGAATC----AACC-GTGG-AT-G--TCAGCAAGAG--ATGGTG--TAA--ATTAATGAAT--CACCGGA--C---AA---A-ATTATT----CACA-AGTTTTT---GCTCTGGTGAAAACACCAAT----TACGGTATG----A-ATTactttatgtaatatata
gi|9 : a-TTCAAGTTTC-ATT-T-ATT-CACGTC-AGTCAAGTT-A-TTAA-T-------ATG-ACCATA-A-G-AGGT-AGC-AG-----TATA---A-TATATATCA-TG--AAAATT-ATAGTACATAGATTGAATC----AA-C-GTGGTATGG--TCAGC-AGA-A-ATGGTGGTTAA--ATT-ATGAATGGCA-CTGAACCA--AAAT-A-ATTA------CA
blockSeqs : C T A G T T C GT C C TTCATTTC C C . . C T G TAGGTG ATATATA T T GA AAT A GT T CGTC C C T G GA C A A GT TA A A GG C AC AGT ATA TT . T . A CA . A TA . C . A . C AA TT CA GTAC CGTGGCACAA TA GCTAG G AT AG A C G G C T C T A C A A CT ACATTAGCT AT GTATTTGGTACAAAAA T A CG G AA A TTTTTCCCC T
blockSeqs : . . . . . . G . . . TT . . . . A . . AG ATAAA . . . . . . . . . . . . . A . A A . . A . . . G AT . . A . A . . A TA . . . C . . GA . A TT GTTTGAT . TTT T A A C C . . . . C . A . A T . ACATGTC AA TGTTGT . . . T AA A CCG A
blockSeqs : . . . . . . . . . . A . . . . . . . AG ATATA . . . . . . . . . . . . . A . A . . . A . . . A AT . . A . . . . A T . . . C . . . . T TT GTAAT . C . . . A . . . . . C . A . A A . ATATT C GTA . . . T AA A CC T
blockSeqs : . . . . . . . . . . T . . . . . . . AG ATCA . . . . . . . . . . . . . C . A . . . A . . . A A . . T . . . . G . . . . . . C . . . . A . ATT A GCA . . . G AA . CC A
blockSeqs : . . . . . . . . . . T . . . . . . . AG ATAA . . . . . . . . . . . . . C . A . . . A . . . A A . . . . . . . . . T . . C A
blockSeqs : . . . . . . . . . . T . . . . . . . AG ATAA . . . . . . . . . . . . . C . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . A . . . . . . . AG ATA . . . . . . . . . . . . . C . . . . .
blockSeqs : . . . . . . . . . . T . . . . . . . A A . . . . . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqCons : ATAA**** A* AT*** ****** *** **** T*** ** ** ** ACATT***** A* GTA************* ** AA CC********
originalCons : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATA---A-TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAGA-ATGGTG--TAA--ATT-ATGAAT--CA-CGGA--CA--AA---A-ATTA------CACA-AGTTTTT---GCTCTGGTGAAAAAAC--GT----GACAGCATGTA--A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATTGATT--CAAAGCGCATACACTT--TTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACNTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGACTTTAGAGATAAAA-ATGCAA-AAGTCTCTTTTGAAGTGAATAATTAGTAGCTTAGACATGTATC-AGGTTACAATAATTTCAGA-TGTT--GTA------TTTGG-TCTATT-AAAAC--AGTATCCATCAGGTAAAAAAAAATTT-------CC-GCAGCTCAGTAANTGC
finalCons : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA-T-------ATG-A-CATA-A-G-AGGT-A-C-AG---TATATAA----TATA-ATCA-TA--AA---T-ATA--ACATAGA-TGAATC----AA-C-GTGG-AT-G--TCAGC-AGAGA-ATGGTG--TAA--ATT-ATGAAT--CA-CGGA--CA--AAAT---ATTA------CACA-AGTTTTT---GCTCTGGTGAAAAAAC--GT----GACAGCATGT---A-ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATT--TT--CAAAGCG--TACACTT--TTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACNTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGACTTTAGAGATAAAA-ATGCAA-AAGTCTCTTTTGAAGTGAATAATTAGTAG--TAGACATT-----AGGTTACAA-AATTTCAGAGTA-------------TTTGG-TCTATT-AAAAC--AGTATCCATCAGGTAAAAAAAAATTTCC--------GCAGCTCAGTAANTGC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTAAATGCTACACATTCCATTAAATAATGATAACTCAGTCTCCAATTTTGTT
Unaligned ( gi|18 ): TTGAAGAAATGCGTTAGTCATATATATATTGTAGTATATTGAA
Unaligned ( gi|19 ): AGAGATGGCACAGTCTATCGTTCATTGGAGAACCACTCCACCA
Alignments
lowQualScore : 11111111 111111 111 11 11111 1 111 111 1 11 1111 2222222 1 11 111 1 1 77777777777777777777777777777777777777777777777777777777777777777777777777777 22 33 1111 11111111111 11 11111 11 11 1 1 1 1 1 22 22 1111 1 55555555555555555555 1 11 11 2222222222
lowQualScore : 3 3 3 3 3 3 6 55 3 3 88888888 4 4 4 4 888 3 3 666666 999999 3 3 55 666 3 55 4 8888 8 4 4 55 2 4 000 0 00 66 5 1 77 5 77 44444 77 1 444 8 1 444 0 11 7777 3 4444444 0 33 444 0 0 77777777777777777777777777777777777777777777777777777777777777777777777777777 22 0 00 2222 88888888888 33 77777 0 8 22 22 1 2 8 5 5 5 6 3 7 3 7 1 22 0 22 7777 8 6 55555555555555555555 6 1 55 1 33 3 3333333333 1
lowQualScore : . . . . . . . .. . . ........ . . . . ... . . ...... ...... . . .. ... . .. . .... . . . .. . . ... . .. .. . . .. . .. ..... .. . ... . . ... . .. .... . ....... . .. ... . . ............................................................................. .. . .. .... ........... .. ..... . . .. .. . . . . . . . . . . . . .. . .. .... . . .................... . . .. . .. . .......... .
lowQualScore : 6 3 3 1 1 1 2 00 6 6 11111111 0 0 0 0 000 6 6 777777 000000 6 6 00 444 6 00 0 5555 0 0 0 55 5 0 555 1 66 11 7 4 99 7 99 33333 99 4 000 0 4 000 6 00 0000 8 8888888 0 88 000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000 00 8 00 4444 55555555555 88 88888 2 8 55 00 0 5 8 0 0 5 7 3 3 3 3 4 00 8 00 0000 0 0 88888888888888888888 7 4 77 3 33 2 3333333333 0
consensus : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAAT-------ATG-A-CATA-A-G-A-GGT-A-C-AG---TATATA---A-TATA-ATCAT-A--AA---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--TCAGCA-GAGA-ATGGTG--TAA--ATTA-TGAAT--CAC-GGA--C-----A--AAAT-ATTACAC---A-AGTTTTT---GCTCTGGTGAAAAAAC--GT----GACAGCATGTAA----ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATTGATTCAAAGCGCATACACTT--TTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACNTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGACTTTAGAGATAAAA-ATGCAA-AAGTCTCTTTTGAAGTGAATAATTAGTAGCTTAGACATGTTAG----GTTAC-AATAATTTCAGA----GT-------------ATTTGG-TCTATT-AAAAC--AGTATCCATCAGGTAAAAAAAAATTT-------CC-GCAGCTCAGTAANTGC
Reference ( family-1354 ) : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAAT-------ATG-A-CATA-A-G-A-GGT-A-C-AG---TATATA---A-TATA-ATCAT-A--AA---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--TCAGCA-GAGA-ATGGTG--TAA--ATTA-TGAAT--CAC-GGA--C-----A--AAAT-ATTACAC---A-AGTTTTT---GCTCTGGTGAAAAAAC--GT----GACAGCATGT-A----ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATT--TTCAAAGCG--TACACTT--TTTATCGTGGCACAATAT--ATTTTGCTAGGCACGGGTATAAAATAGTAGTAAACNTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGACTTTAGAGATAAAA-ATGCAA-AAGTCTCTTTTGAAGTGAATAATTAGTAG--TAGACA--TTAG----GTTAC-AA-AATTTCAGA----GT-------------ATTTGG-TCTATT-AAAAC--AGTATCCATCAGGTAAAAAAAAATTT-------CC-GCAGCTCAGTAANTGC
gi|1 : TATTGATTCAAAGCGCATACACTT--TTTATCGTGGCACAA-AT--ATTTTGCTAGGCATGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGA-TTTAGAAATAAAATATGCAACAAGTCTCTTTTGAAGTGAATAATTAGTTGCTTAGACATGTCAG----GTTAC-AATAATTTCAGATGTTGT--------------CTTGG-TCTATTAAAAACCGAGTAGTCATCAGAT--AAAAAAATTT-------CCGGCAGCTCAGTAATTGC
gi|10 : AG-TTGAA--T-T-ATT-A-ATT-CGC-TCAAGTC-A--T---TTCAT-------ATA-A-CATATATG-A-GGT-G-C-AG---TGTA--------ATA-ACCTT-A--AA---TA-AA--ACATAGA-T----------AC-GTA----------AGCA-GAGATAT-GTA--AAA--ACGA-TCCAT--CAG-TGA--C-----A--AGGT-ATTtaccggattccattaaatatatgatacctcagtcttcctaattttgttgcaattacagatacgctacagtctatcgttcattggcgagtaccacttcatgctacccaatcaacaggaaaaatgatgattagtcgctggttgtcgttctaaattttgatttaaactagtggtcatatacattttgagcgcatgtttatcaaagagcttatcaatggacaaaatattgtttgtcgtaaaattctgctaacataagtcctttgtcgaatcatattatttcactatgccatgtttcataaaaatttggtctttaaggacttgacaaattacgaagaaatccatcttagctggtgacatggaagtgtgtagcttggttacatttcaaactttgacactcctcatgagtgtcacaagaatattatctgaatgccaacgaaaaccagggatttctcatttaatcaccacttttatactgctcgttgcgacaaaatatatgtaaataagtgtttacaaattttgttttcatcattggagagagactttagccccataggaaat
gi|11 : TCCAAG-TTCAAATT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAAA-------ATG-A-CATA-A-G-A-GGT-A-C-AG---TATATATATA-TATA-ATCAT-A--AA---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--T----A-GGAA-ATATTG--CAA--
gi|12 : AAG-T-CAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAA--------ATG-A-CACA-T-G------------------------------------T-A--AA---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--TCAGCA-GAG--ATGGTG--TAA--ATTga
gi|13 : GT-A-T-A----TATATA---AATATA-ATCAT-A--AA---TA-CA--ATATTGA-TAAATC----AAC-GTGA-AT-G--GAAATA-GAAA-A
gi|14 : aAAAGACTTCAGAAATAAAA-ATAC-A-AAGTCTCTTTTGAAGattgtgacaaaaa
gi|15 : ttaacattttatagtaatactaaatataatttggtc--T-A-TTCAT-------ATG-A-CATA-A-G-A-GGT-A-C------TATATAT--A-TACA-ATCAT-A--AA---TA-CA--ACATA
gi|17 : aatCTATT-AAAAC--AGTAGTCATCAGATAAAAAAA---TT-------CC-GCAGCTCAGTAAT
gi|2 : ATT--TTCAAAGCA--TACACGTACTTTAT----GTTTGATATTAATTTTTTT-----CG--TATAAAA--GTA-TAAACAT-------------GA-TCTTATTTG-GTC-AAAGACT---GAGATAAAA-ATGCAA-A-GTCTCTTTTGAAGTGAATAATTAGTAG--TAGACA--TTAGCTAGGTTAC-AC-AATTTCAGA----GT-------------ATTTGG-TCTATT-AAAAC--AATATCTATCAGGTAAAAAAAAAATT-------CC-GCAGCTCAGTAAATGC
gi|20 : gtattaTCAAA----GT-------------ATTTGG-TCTATT-AAAAC--AATATCCATCAGGTAAAtacacatattccaatttgttgcaattacagagattacagagagattacagagatggcccagtctatccactccagctacctacaggaaaatgatgaacagttgttctaatttgattaaactagttctaagttctttaggcatgtttaccaaataactttcaatcgaaaatattacgccatttctgtataaattggtcattgaggatttgaaaaactacggaagaaacccatctaacaggtacatgtacacaagttgtgctttgttcattccaaatatttgacagttcacatgtgtcaaaaatagttgaatacaagaaaaccagggatttctatttaatccccttttatactgctcgtgtaaatatatgtaaataattttacaaattttgttttcatcactggagagaactttagcccactaggaaat
gi|21 : gGTTCAAG-TTCAAGTT-CAATT-T-ATT-CGC-TCAA
gi|22 : caaCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGT
gi|23 : taTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-T
gi|24 : GTTCAAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCA
gi|3 : TTCAAG-TTCA-GTT-C-ATTGT-ATTTCACCTCAAG---A--T-ACTTAGTTCATTTCATG-A-CATA-A-ACG-GGT-A-CTAGGTGTATATC---A-CATC-ATAAT-AGAAA---CA-TA--ACGT-GA-TGAATCCGTCAACCGTGG-AT-AGATAAGCA-GAGA-----TG--TAATAATCA-TGA-T--CAC-GGA--CGAACTA--AACT-ATTACACCACATAGTATTTCTCACTCTGTGGAAAAAAC--GTCATCGAC-GCATAT-ACTACATTGTTG-TGACTAATATTCAATAATTTGAAGA-CAT
gi|3 : TATTGATTCAAAGCGCATACACTT--TTTATCGTGGCACAA-AT--ATTTTGCTAGGCATGGGTATAAAATAGTAGTAAACCTCACAGCTTCAGAAGAGTCTTGTTTGCGACTAAAGA-TTTAGAAATAAAATATGCAACAAGTCTCTTTTGAAGTGAATAATTAGTTGCTTAGACATGTCAG----GTTAC-AATAATTTCAGATGTTGT--------------CTTGG-TCTATTAAAAACCGAGTAGTCATCAGAT--AAAAAAATTT-------CCGGCAGCTCAGTAATTGgtagttggtccatacttacatatatatatacttgtgcagagctattgattcaaagcgcatacactttttatcgtggcacaaatattttgctaggcatgggtataaaatagtagtaaacctcacagcttcagaagagtcttgtttgcgactaaagatttagaaataaaatatgcaacaagtctcttttgaagtgaataattagttgcttagacatgtcaggttacaataatttcagatgttgtcttggtctattaaaaaccgagtagtcatcagataaaaaaatttccggcagctcagtaattg
gi|4 : ttcaagttcagttcattgtatttcacctcaagatacttagttcatttcatgacataaacgggtactaggtgtatatcacatcataatagaaacataacgtgatgaatccgtcaaccgtggatagataagcagagatgtaataatcatgatcacggacgaactaaactattacaccacatagtatttctcactctgtggaaaaaacgtcatcgacgcatatactacattgttgtgactaatattcaataatttgaagacatgtagttggtccatacttacatatatatatacttgtgcagagcGTTCAAGCTTCAAGCT-C-ATT-TTATT-CAC-TCAGTTAAA--T-A-TTCAT-------ATGCA-CATA-A-G-A-GGTTA-C-AG---TAGATA---A-TTTA-ATCAT-A--AA---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--TCAG-A-GAGA-ATGGTGA-TAA--ATCA-TGAAT--CAC-GGA--C-----AGTAAA--ATTACAC---A-AGTTTTT---GCTCTGGTGAAGAAAC--GT----GACAGCATGT-A----ATTTTTGCTGAT--AAATA--TTAA-TTGAAGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTATT--TTC-AAGCGT-TACAC-----TTAT-GT-----AATAT--ATTTT-C---GTACATGTATAAA--AGT--TAAACATCACA-CTTCAGAACA-TCTTATTTG-GAC-AAAG-CTTTAGAGATAAAA-ATGC-A-AAGTCTCTT---GAGTGAATAATTAGTAG--TAG--A--TTAG----GTTACAAA-AATTTCAAA----GC-------------ATTTGGTTCTATT-AAAAC--AATATCTATCAGGT--------ATTTTTTTTCCCC-GCAGCTCAGTAAATGC
gi|5 : AAAGACTTTAGAGATAAAA-ATGCAA-A-GTCTATTTTGAAGTGAATAATTAGTAG--TAGATA--TTAG----GTTAC-AA-AATTTCAGA----GTATTTGGTACAAAAATTTGG-TCTATT-AAAGC--AATATCTATCTGGTAAAAATAAATTT--------C-GCAGCTCAGTAAATGC
gi|6 : AAG-TTCAAGTT-C-ATT-T-ATT-CAC-TCAAGTCAA--T-A-TTAAT-------ATG-A-CTAA-A-G-T-GGT-A-C-AG---TAT------A-TATA-ATCAT-A--AA---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--TCAGCA-GAG--ATGGTG--TAA--ATTA-TG-AT--CAC-GGA--C-----A--AAAT-ATTACAC---A-AGATTTT---GCTCTGGTG-AAAAAC--GT----GACAGCATGTAA----ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATtacacattccattaaataatgatactcatctccaattgtgttgcaattacagagatggcacagtctatcgttcattggagtaccactcaaccaacctatttcaacaggaaaatgattagttgttctaaatttgattaaactagttctatgtttttaggcatgtttataaaataactttcactcgaaaatattgttttgtaaattttgtaacataaagcccttg
gi|6 : TGTAGTATT--TTCAAGGCG--TACACTT--Tacgttagtcatatatatatattgtagtattttcaaggcgtacactttatgtaatataaa
gi|7 : aagttcaagttcatttattcactcaagtcaatattaatatgactaaagtggtacagtatatataatcataaatataacatagatgaatcaacgtggatgtcagcagagatggtgtaaattatgatcacggacaaaatattacacaagattttgctctggtgaaaaacgtgacagcatgtaaatttttgtgatatatcataattgaagaaatacgttagtcatatatatatatTT-T-ATT-CAC-TCAAGTCAA--T-A-TTAAA-------ATG-A-CATA-A-G-A-GGT-A-C-AG---TATATA-------TA-ATCAT-A--AA---TA-TA--ACATAGA-TGAATC----AAC-GTGG-AT-G--TCAGCA-GAGA--TGGTG--TAA--ATTA-TAAA---AAC-GGA--C-----A--AAAT-TTTACAT---A-AGATTTT---GCTCTGGTG-AAAAAC--GT----GAAAGCCAGTAA----ATTTTTG-TGAT--ATATC--ATAA-TTGAAGA-AATatgtaatataaa
gi|8 : GTTCATG-TCCAAGTT-A-ATT-T-ATT-CAC-TCAAGTCAA--TCA-TCAATT------ATG-G-CATA-A-G-AAGGT-A-C-AG---TATATA-------TA-ATCATTA--AA---TAATA--AC-TAGA-TGAATC----AACCGTGG-AT-G--TCAGCAAGAGA--TGGTG--TAA--ATTAATGAAT--CACCGGA--C-----A--AAATTATT-CAC---A-AGTTTTT---GCTCTGGTGAAAACACCAAT----TACGGTATG--A----ATTactttatgtaatatata
gi|9 : a-TTCAAGTTTC-ATT-T-ATT-CACGTC-AGTCAAGTT-A-TTAAT-------ATG-ACCATA-A-G-A-GGT-AGC-AG-----TATA---A-TATATATCAT-G--AAAATTA-TAGTACATAGATTGAATC----AAC-GTGGTATGG--TCAGCA-GA-A-ATGGTGGTTAA--ATTA-TGAATGGCAC-TGAACC-----A--AAATAATTACA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTAAATGCTACACATTCCATTAAATAATGATAACTCAGTCTCCAATTTTGTT
Unaligned ( gi|18 ): TTGAAGAAATGCGTTAGTCATATATATATTGTAGTATATTGAA
Unaligned ( gi|19 ): AGAGATGGCACAGTCTATCGTTCATTGGAGAACCACTCCACCA