lowQualScore : 1111111111111111111111111111111111111111111111111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 11 4 2222 22 66666666666666 11 11 5555555555 2 11 1 1 1 1 111 11 3333333333333333333333333333333333333333333333333 111 22 333 5555555555555555555555555555 333 11 1111 33333333333333 999999999999999999999999999999999999999 444444444444444444444 222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 22 0 8888 00 6 11111111111111 44 3 88 4444444444 7 33 0 0 5 0 33 888 33 2222222222222222222222222222222222222222222222222 222 33 8 0 222 0 5 7777777777777777777777777777 333 2 6 00 99 8888 66666666666666 99 6 666666666666666666666666666666666666666 6 8 999999999999999999999 8 8 333333 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 99999 1 6
lowQualScore : .. . .... .. . .............. .. . .. .......... . .. . . . . .. ... .. ................................................. ... .. . . ... . . ............................ ... . . .. .. .... .............. .. . ....................................... . . ..................... . . ...... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..... . .
lowQualScore : 00 0 3333 77 0 33333333333333 00 7 33 2222222222 5 22 0 0 5 0 22 000 22 4444444444444444444444444444444444444444444444444 888 88 0 8 000 8 0 0000000000000000000000000000 777 5 7 22 22 2222 55555555555555 22 7 000000000000000000000000000000000000000 7 0 888888888888888888888 0 0 000000 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 00000 0 0
consensus : NAATACTGGGTGGTG----TGGGTGCAA-CCCCCTC--CTTCAA-T--CCCCT-TCNCT--GTGAAACAA-T--GCACC-TAT-TAT-CATTCT-AAAGCGG-ATNACATT-TAATCTA-TTTAGTTT--ACACA---CAGG-GAGAAG------GGGGGGGGC---GGGGGGGGCGGGTCGATGGG-CCCC-TCTA-ATAC-T-GCTTATGTTAG----------TCTCG--ATTTAAA-A-AAAAAAT--TGAAAAATTT-TGATTT-ATTTTCA--GGC--ATAAAATT-AA-A-CATGATTT--TTAATC-CG--ATATACA-TTTA-GA-TC------C--------TG--ACC-GATTGCAG-AA-------AT---CC-C--A-TTT-TTT-AGTTT------ACTGCTA-----TTAC------A-CG-A---GA-AGCATGGTA-TCCCCCTTTCCCNAAAAATATAAATGTC---ATTAANCAGCTGGAAA--TTGG-ATTTCCCATAG-CCG-AA---GGGG---GGGGAT---ANAAAN-CGC-GAAT-T---TTTAC-CATATAT-ATATACTGCTTGT-TCT-T-G--GTTTTAT-ATT-TG--ACGT--TT--CTTTCT-TNTATTCTAT-CAGG--CTTG-GT-GAT-TTCTTTT-GATGT-TTATTTG-TT-----GTCGTTCNATAG-A-C---G---------G-CTA-CC----------CAT--------------------NTGT-------------------------TTA-----T-----------TCGGT-----------------CAGCGGGTGC-NGGC-CGGAAATGAT-CG--CG--GG-TG-TG---TACT-AATA--CAC-ANGT--TCGTCGGTTCCTTTGAGAT
Reference ( gi|1 ) : AAATATCGGG-GGTG----TGGGTGCAA-CTCCCTC--CTTCAAATAACCCCT-CCCCT--GTGAAACAAAT--ACACCCTAT-TAT-CATTCT-AAAGCGA-ATGACAAT-TAATCTA-TTTAGTTTTTACACAA--CAAGGGAGAAAGAGGGGGGGGGGGGCTTTGGGGGGGGGGGGTTGATGGG-CCC--TCTA-ATAC-TTGCTTATGTTA-----------TCTTA--ATTTGAAAATAAAAAATAATGAAAAATTT-TGATTT-ATTTTCA--GGC--ATAAAACT-AA-A-CATAATTT--TTAATC-CG--AT-T-CA-TTT--GA-TC------T--------TG--ACC-GATTGCAG-AA-------AT---CC-C--A-TTT-TTT-AGTTT------ACTGC-------CTAC------A-CGCA---GA-AGCATGGCACCCCCCCCCCCCCCAAATATATAAATGCC---ATTAAACAGTTGCAAATCTTGGAATTTCCCATAG-C---AA---CCAG---GGGGAT---ATAAATTCAT-GA-------TTTAC-CA-ATATAATACACTGCATGT-TCT-T-G--GTTTTAT-ATT-TG--ACGT--TT--CTTTCT-TATATTCTAT-CAGG--CTT--AT-GATCTTCTTTT-GATGT-TTATTTG-TT-----GTCATTCCATAGCA-C---G---------G-CTA-CC----------CAT--------------------ATGT-------------------------TTA-----T-----------TCGGT-----------------CAGCGGGTGC-CGG--CAAAGATGATCCA--CG--GG-TG-TGT--TATTAAATA--CAC-AGGT--TCGTCGGTTTCCTTGAGAT
gi|3 : AATACTGGGTGGTGAAGGTGTGTGCAA-CCCCC----CTCCAA-TA-CCCCT-CCTCTTAGTGA--CAA-T--ACACC-TAT--ATGCATTCTTAAAGCGGCATGGCATT-TAATCTAGTTTAGTT---ACACAAACCAGGCGAGAA-------GGGAAGGGC------------GGGTTGATG----CC--CCTA-ATAC-T-GCTTAT--TA-----------TACTA--ATTT---AACAAAAAA--------AAGTT-TGATTA-ATTT-CA--GGTCAATAAAATT-AA-AACATG--TT--TTAATC-CGA-AG-A-CA-TTTA-GA-TC---------------TGAAACC-GATTGCAG-AA-------ATATACCAC--A-CTT-TTTGAGTTT------ACTGT-------ATAC------A-C------GATATCATG--------CCTTCCCCAAAAAATATAAATGTCCTAATTAACTAG-TGGAAATT---GCATTTCCCATAA-CAG-AA---GGCG---GGGGGT---ATAA----GT-GATT-----TTTAC-CATATAT
gi|2 : gagaaacgagagagagagatagattatgaagagagagagaaaacaagactG----TGGGTGCAAACCCCCTC----TCAAGT----CGTGTCCCT--GTGAAA-ACATCAGCACC-TATGTAT-CATTCT-AAAGCGG-ATTACATT-TAATCTA--TTAGTTT---CACA---------AGAAA--------GGAGGGTT---------GTGGTTCGATGGGCCCC--TCTA-A-------CTCATGTT------------TCTTGTTATTTAAA---AAAAATTAAT------TTT-TA---T-ATTTTCA--GGC--A-AAAGGT-GA-T-CATGA-TT--TCAATC-CG--AT-TAAA-TTTA-GA-TC------CCCGAATCGTG--TAC-GAGTGCAG-AA-------A----CC-C--A--TT-TTT-AGTGT------ACTTCTAA----TTACTTTGT-T-CACA---AG-AACAT-------CCCTTTTCCCTAAAAATA-----GTC---ATTAA----CTG-AA---TTG--AT---CCAT--------------AT---GGGCA----GTAAAGGTAT-GA-------TTTAC-CATATAT----CACTGCTTG--TCT-T----GTTTT--------------T--TT--TTCTCT-TA---TTTAT-CAGG--CTTGGAT-G----TCTGT---ATGG-TTA-----TT-----GTTCTTCCG-AGAATC---G---------G-CTACCC----------CAT---------------------TGT-------------------------TCACTTCTT-----------TCGATTTTATTTGTTTATCGTGCAGCGGGGGC-CGG---AAAGgcct
gi|12 : ----TGGGTGCA--CCCCCTTATCTTCAAC--ACCCCT-TCACT--GTGAA-CAA-----TAACCTAT-TAT-CAACAT-AA-GCAA-ATTACATT-TAATCTA-TTTAGTTTT
gi|15 : agagagagagagagagagagaagtactAACAA-----CACC-TAT-TAT-CATTCT-AA-GCGA-ATGCCATTATAATCTA-TTTAGTT---ACACA---TAAGGGAGAAGGGGGAGGGGGGGGG----GGGAGG
gi|7 : gGGGGG----GGGGGGGGCGGGTCGTGGGG-CCCCTTCTA-ATACACTGCTC-TCTTAGTGGCCACCCTTCTCA--ATTTAAAAAAAAAAAAT--TGAAAAATTTCTGATTTTATTTTCAGTGGC---CAAATCA-AATA-CATGTTTTTGTTAATCGCGAAAT-A-CA-TTCTAGATTC------T--------TGT-ACCGGATTGCAG-AAAAAATCTAC---CC-C--ATTTT-TTT-AGTTT------ACTG--------TTAC------A-CGAG---AA-AGCATGGTCCTCCCCC
gi|6 : GGAGGGGGTGGGGTGATGGA-CCCC-TCTTTATAC-T-GCTTATGTTAG----------TCTC----TTT-----TAAAGAAT--TGAAAAATAT-TGATTT-ATTTTTA---GC--ATAAAATTAAA-A-CATGATTT--ATAATC-CG--ATATACA-TTTA-GA-TCCCCGTAC--------TG--ATC-GATTGCAG-AA-------AA---TA-CAAA-TTT-TTA-AGTTT------ACTGTAA-----TTACTTTTTTATTGCATGGGA-AGCATGTTA----TTTTTTCCCCAAA-ATATAAAT--C---ATTAAGCAG-TGAAAA--TTGG-ATTTCCTATAG-CCTGAAGGGGAGG---GGGGAT---AAAAAAAAATCGAATTTT--TTTAC-C--GTAT-ATATACTGCTTG--TCT-T-GT-GTTTTAT-
gi|13 : -ATAC-T-GCTTATGTTAG----------TCTTA--ATTTAAATATAAAA-----TGAAAAATTT-TGATT--ATTTTCA--GGC--ATAAAATTAAA-A-CATTATTT--TTAATC-AG--ATATACAGTTT--GA-GC------A--------TC--ACT-GAtaa
gi|9 : TTAG----------TCTTG--ATTT------AAAAAA-AATGAAACATTT-TTATTT-ATTTTCA--GGC--A-AAAA--------------------AATC-CG--ATATACA-TTTA-GA-TCCCCGTGT--------TG--ACC-GATTGCAGAAA-------AT---AC-C--C-TTTATTT-AGTTTCCTATAATTACTTTTTTGTTAC------A-CG-A---GA-AGCATGGTAACCCCCCaga
gi|4 : AC------A-CG-A---GA-AACATAGTATTTCCCCCC-----AAAAACATAACTGTT---ATTAAACAATGGGAA---TTGGA-TTTCCCATAGGCTG-AA---GGGGAGTGGGGATCAAAAGAATTCGA-AAAAATATTTTTAC-CA-C----ATATACTGCTTGT--CT-T-G---TCTTCT-ATT-TG--ATGT--TT--CTTTGT-T-TATTTTAT-CAGA--CTT--G--GAT-TTCTTTT-GATGT-TC---TG-TTAGACGGCTGCTCCATTGTT-C---G---------G-CTT-CCGTTTGATATTTAT--------------------TTGT-------------------------TTA-----T-----------TCGGT-----------------CACCGGGTGC-GGC--CGGAAATGAT-CG--CGGTGG-TG-TATAATACT-AATG--TAC--GGT--T----GGTTCCTTTattttttaaaagtgtaagacttgttgggtattgaaa
gi|5 : G---GGGGGT----CAAAT-CGC-AA-------TTCTCACA-ATATCAT-C-CTGCTTGCCTCTAT-GAGGTGTTATTATTATGTTACGTGCTT--CTCTTT-TTTATTCTATGCAGGTCCTTC-GTCGAT-TTCTTTTCGATGTCTTATTTGTTT-----ATC--TCGATAG-A-C---G---------G-CTA-CC----------CATTGTTGGTTCCTCTTCTTTGCATGT-------------------------TTA-----TCTTTCGTTTACTCGGT-----------------CAGAGGGTGTGCGGCTCGGAAATGATAAAGTCG--GG-TG-TG---TA-TACATAATCACTATGTCATCGTCGGTGTCTCTGAGATtgatattctcgatgtaaaattataaataaactcgaacaaatcgaaa
gi|8 : gtttccctgataggcagaaggggATATCCTGCTTGT-TCT-TTG--GTTT----ATT-TG--ACG---TT--CTTTCTCTCTTTTCTAT-CA-G--CTTG-AT-G-----CTTTT-GATGT-TTA-TTG-T-------TTATCCGAAAG-A-C---G---------GACTA-CC----------CAT--------------------ATGTTCGGTTCTTTATGATGGATCTTATGTTA-----T-----------TCGTT-----------------CAG-GGGTGC-AGGC-CGGAAATGAT-CG--CG--GGATGATG---TAT--AATA--CAC-AAA---TCGTC-GTTCCTTTGAGATctcgatactctctcagatgactctgaacaaaaagaaa
gi|11 : -TG--ATGC--TTATTTTTTT-TAAATTC-----AGA--CTT---T-GCT-TTCTTTT-GATGT-TTATTTG-TTTA---CTCAGTC---AG-A-CTTTGTTGTCTTTTG-ATG-TT----------TAT--------------------TTGT-------------------------TTA-----T-----------TCAGT-----------------CAGCGCGTGC-tctcgatgatcaaactcgaaaatagaaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GATGTACCCCTCAAATACTGCTATGTTAGTCTTATTCAGAGATATTTATTTCTAGCATAACCAAAATATGATTATGATCCATAAATCATTTAAATCCCCGTACACAATTCATAAATTATATATTTCATATATTTTAAAATTGTTACCGTAAATAT
Unaligned ( gi|14 ): GGGGGGGGGGGGTTAAACAGAATTCGAAAAAGATTTTTACCATATTTACTGCTTGTTTTGTTGTCGATGTTTCTTTGTTTAATTTATCAGATTTGGATTTCTTT
Unaligned ( gi|16 ): TAAATACACATTTATGGTCGGTTCTTTTTGATATTCTCGATGTAAAATTGTTTTTAAAAAAACCCTCGATCAAATCAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 11 11111 4444 11 22222 1111 4444444444 222222 33333 22222222222 22222 1111111111 1111 111 11 555555555555555 3333333333333333333333 111111 77777777777777777777777777777 222222 111 22222 11 22222 111 111 66666666666666666666666666666 11 111 11 222222222222 3333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 22222222 22 111 1 1 1 444444 1 111 1
lowQualScore : 5 1111 33 99999 4444 1 33 66 44444 8 88 8 88 0 8 1 8 8 0 0 5555 1111111111 888888 11111 1 3 2 6 5 77 5 77777777777 00000 888 4444444444 2 0 5 88 999 0000 66 333 9999 22 777 5 33 5 5 5 5 5 5 222222222222222 8888 6 7777777777777777777777 6 6 999999 33333333333333333333333333333 5 5 3 555555 6 44 6 66 444 44444 8 11 6 99 88888 000 000 55555555555555555555555555555 00 666 1 99 5 888888888888 5 77 0 888 1 5 6 77 6 5 77 4444 1 5 6 6 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 44444444 2 33 99 8 444 0 0 0 111111 3 0 1 777 0 2
lowQualScore : . .... .. ..... .... . .. .. ..... . .. . .. . . . . . . . .... .......... ...... ..... . . . . . .. . ........... ..... ... .......... . . . .. ... .... .. ... .... .. ... . .. . . . . . . ............... .... . ...................... . . ...... ............................. . . . ...... . .. . .. ... ..... . .. . .. ..... ... ... ............................. .. ... . .. . ............ . .. . ... . . . .. . . .. .... . . . . ............................................................................................................................ ... ........ . .. .. . ... . . . ...... . . . ... . .
lowQualScore : 5 2222 22 88888 5555 0 88 44 44444 0 88 0 88 8 0 0 0 0 8 8 1111 2222222222 888888 77777 0 7 5 7 7 99 7 55555555555 66666 999 5555555555 5 4 0 22 444 2222 99 999 1111 66 444 0 66 0 0 0 0 0 0 111111111111111 3333 7 2222222222222222222222 7 7 222222 44444444444444444444444444444 7 7 0 777777 0 22 7 22 000 22222 2 00 7 22 77777 000 000 77777777777777777777777777777 77 999 4 99 7 666666666666 7 99 4 000 7 7 6 99 6 7 99 4444 4 7 7 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 777 22222222 5 00 22 0 000 0 0 0 555555 2 0 0 000 0 5
consensus : NAATACCGGGTGGTG----TGGGTGCAA-CCCCCTC--CTTCAA-TA-CCCCTCCCCT--GTGAAACAA-T--ACACC-TAT-TAT-CATTCT-AAAGCGA-ATGACATT-TAATCTA-TTTAGTTT--ACACAA--C-A-GG-GAGAA------GGGGGGGGGG---GGGGGGGGCGGGTCGATGGGCCCC-TCTA-AT--ACT-GCTTATGTTAG----------TCTTA--ATTT--AAAAA--AAAAAT--TGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AATT-AA--A-CATGATTT--TTAATC-CGATATA-CA-TT-T-AG-A-TC------C--------TG-A--CC-GATTGCAGAA-------A-T---CC-C--A-TTT-TTT-AGTTT------ACTG-----------CT-----ATTA-------CACG-AG-AAGCATGGT-ATCCCCCTTTCCCCAAAA-ATATAAATGTC---ATTAAACAG-TGGAAAT--TGGA-TTTCCC--ATAG-CC-GAAGG---GG---GGGGGT---ANAAAN-CG--CGA------A-----TTTTTACCA-TATATATATACTGCTTGT-TCT-T-G--GTTTTAT-ATT-TG--ACGT--TTCTTTCT-TTTA--TTCTAT-CAGG--CTTG-T-GAT-TTCTTTT-GATGT-TTATTTGTT------GTC-------GT--TCNATAG-ACGG-CTACC----------C-----------------------AT--------------------NTGTT-------------------------TA---TTCG--------GTCAGCGGGTGC--GGC-CGGAAATGAT-CG---CGGG-TG-TG-TAT---T-AATACAC-ANGT--TC-GTCGGTTCCTTTGAGAT
Reference ( family-135 ) : NAATACTGGGTGGTG----TGGGTGCAA-CCCCCTC--CTTCAA-T--CCCCTTCNCT--GTGAAACAA-T--GCACC-TAT-TAT-CATTCT-AAAGCGG-ATNACATT-TAATCTA-TTTAGTTT--ACACA---C-A-GG-GAGAA------GGGGGGGGGC---GGGGGGGGCGGGTCGATGGGCCCC-TCTA-AT--ACT-GCTTATGTTAG----------TCTCG--ATTT--AAAAA--AAAAAT--TGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AATT-AA--A-CATGATTT--TTAATC-CGATATA-CA-TT-T-AG-A-TC------C--------TG-A--CC-GATTGCAGAA-------A-T---CC-C--A-TTT-TTT-AGTTT------ACTG-----------CT-----ATTA-------CACG-AG-AAGCATGGT-ATCCCCCTTTCCCNAAAA-ATATAAATGTC---ATTAANCAGCTGGAAAT--TGGA-TTTCCC--ATAG-CC-GAAGG---GG---GGGGAT---ANAAAN-CG--CGA------A-----TTTTTACCA-TATATATATACTGCTTGT-TCT-T-G--GTTTTAT-ATT-TG--ACGT--TTCTTTCT-TNTA--TTCTAT-CAGG--CTTGGT-GAT-TTCTTTT-GATGT-TTATTTGTT------GTC-------GT--TCNATAG-ACGG-CTACC----------C-----------------------AT--------------------NTGTT-------------------------TA---TTCG--------GTCAGCGGGTGC-NGGC-CGGAAATGAT-CG---CGGG-TG-TG-TAC---T-AATACAC-ANGT--TC-GTCGGTTCCTTTGAGAT
gi|1 : AATATCGGG-GGTG----TGGGTGCAA-CTCCCTC--CTTCAAATAACCCCTCCCCT--GTGAAACAAAT--ACACCCTAT-TAT-CATTCT-AAAGCGA-ATGACAAT-TAATCTA-TTTAGTTTTTACACAA--C-AAGG-GAGAAAGAGGGGGGGGGGGGCTTTGGGGGGGGGGGGTTGATGGGCCC--TCTA-AT--ACTTGCTTATGTTA-----------TCTTA--ATTT--GAAAATAAAAAATAATGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AACT-AA--A-CATAATTT--TTAATC-CGAT-T--CA-TT-T--G-A-TC------T--------TG-A--CC-GATTGCAGAA-------A-T---CC-C--A-TTT-TTT-AGTTT------ACTG-----------CC-------TA-------CACGCAG-AAGCATGGC-ACCCCCCCCCCCCCCAAATATATAAATGCC---ATTAAACAGTTGCAAATCTTGGAATTTCCC--ATAG-C---AACC---AG---GGGGAT---ATAAATTCA--TGA--------------TTTACCAATATA-ATACACTGCATGT-TCT-T-G--GTTTTAT-ATT-TG--ACGT--TTCTTTCT-TATA--TTCTAT-CAGG--CTT-AT-GATCTTCTTTT-GATGT-TTATTTGTT------GTC-------AT--TCCATAGCACGG-CTACC----------C-----------------------AT--------------------ATGTT-------------------------TA---TTCG--------GTCAGCGGGTGC-CGG--CAAAGATGATCCA---CGGG-TG-TGTTAT---TAAATACAC-AGGT--TC-GTCGGTTTCCTTGAGAT
gi|10 : aGATGTACCCC-TCAA-AT--ACT-GC-TATGTTAG----------TCTT--------------------AT--TCAGAGAT-----A-TTTATTTCTA---GC--ATAACCA----AA--A-TATGA-TT--ATGATC-C-ATAAATCA-TT-T-AA-A-TC------C--------
gi|11 : -TG--ATGC--TTATTTTT-TTTAAATTC-----AGA--CTT--T-GCT-TTCTTTT-GATGT-TTATTTGTTTACTCAGTCAGACTTTGTTGTCTTTTG-ATGT-TT-------------------------------------AT--------------------TTGTT-------------------------TA---TTCA--------GTCAGCGCGTGC--GAA-CGGAAATCTC-CG---CGccgtacacaattcataaattatatatttcatatattttaaaattgttaccgtaaatat
gi|12 : ----TGGGTGCA--CCCCCTTATCTTCAA-CA-CCCCTTCACT--GTGAA-CAA-T--A-ACC-TAT-TAT-CAACAT-AA-GCAA-ATTACATT-TAATCTA-TTTAGTTT--
gi|13 : agagagagagagagagagagaagtact-AT--ACT-GCTTATGTTAG----------TCTTA--ATTT--AAATA--TAAAA---TGAAAAATTT-TGA--TTATTTTCA--GGC--ATAA--AATTAAA--A-CATTATTT--TTAATC-AGATATA-CAGTT-TGAGCA-TCA-----C--------TG-A--t
gi|14 : GG---GG---GGGGGTTAAACAGAA-TT--CGA------AAAAGATTTTTACCA-TAT---T-TACTGCTTGT-T-T-T-G-----TTG----T-CG--ATGT--TTCTTTGT-TTAA--TT-TAT-CAGA--TTTG---GAT-TTCTTTaga
gi|15 : gggAACAA-----CACC-TAT-TAT-CATTCT--AAGCGA-ATGCCATTATAATCTA-TTTAG-TT--ACACA---TAA-GG-GAGAA------GGGGGAGGGG---GGGGGGGGAGG
gi|2 : gG----TGGGTGCAAACCCCCTC----TCAA-G--TCGTGTCCCT--GTGAAAACA-TCAGCACC-TATGTAT-CATTCT-AAAGCGG-ATTACATT-TAATCTA-TT-AGTTT-----CA---C-A-----AGAA------AGGAGGGTT-----------GTGGTTCGATGGGCCCC-TCTA-A--------CTCATGTT------------TCTTGTTATTT----AAA--AAAAAT--T----AATTT-TTA---TATTTTCA--GGC--A-AA--AGGT-GA--T-CATGA-TT--TCAATC-CGAT-TA-AA-TT-T-AG-A-TC------CCCGAATCGTG-T--AC-GAGTGCAGAA-------A-----CC-C--A--TT-TTT-AGTGT------ACTT-----------CTA----ATTACTTTGTTCACA-AG-AA-CAT-------CCCTTTTCCCTAAAA-ATA-----GTC---ATTAA----CTG--AAT--T-GA-T---CC--ATA-------------TG---GGCAGT---A-AAGG-TA--TGA--------------TTTACCA-TATAT---CACTGCTTG--TCT-T----GTT----------------T--TTTTTTCT-CTTA--TT-TAT-CAGG--CTTG---GAT-GTCTGT---ATGG-TTA-TTGT--------TC-------TT--CCGAGAA-TCGG-CTACC----------CCATTGTTCACTTCTTTCGATTTTAT--------------------TTGTT-------------------------TA----TCG--------TGCAGCGGG-----GGC-CGGAAA
gi|3 : AATACTGGGTGGTGAAGGTGTGTGCAA-CCCCC----CTCCAA-TA-CCCCTCCTCTTAGTGA--CAA-T--ACACC-TAT--ATGCATTCTTAAAGCGGCATGGCATT-TAATCTAGTTTAGTT---ACACAAACC-A-GGCGAGAA------GGGAAGGG-------------CGGGTTGATG----CC-CCTA-AT--ACT-GCTTATTATA------------CT-A--ATTT--AACAA--AAAAA---------AGTT-TGA-TTAATTT-CA--GGTCAATAA--AATT-AA--AACATG--TT--TTAATC-CGA-AGA-CA-TT-T-AG-A-TC---------------TG-AAACC-GATTGCAGAA-------A-TATACCAC--A-CTT-TTTGAGTTT------ACTG------------T-----AT-A-------CACG-AT-A-TCATG--------CCTTCCCCAAAAA-ATATAAATGTCCTAATTAACTAG-TGGAAAT--TGCA-TTTCCC--ATAA-CA-GAAGG---CG---GGGGGT---ATAA----G--TG-------A-----TTTTTACCA-TATATg
gi|4 : gagaaacgagagagagagatagattatgaagagagagagaaaacaagactA-------CACG-AG-AAACATAGT-ATTTCCC----CCCAAAA-ACATAACTGTT---ATTAAACAA-TGGGAAT--TGGA-TTTCCC--ATAGGCT-GAAGG---GGAGTGGGGATCA-AAAGAA-TT--CGAAAAAATA-----TTTTTACC-----ACATATACTGCTTG--TCT-T----GTCTTCT-ATT-TG--ATGT--TTCTTTGT-T-TA--TTTTAT-CAGA--CTTG---GAT-TTCTTTT-GATGT----TCTGTTAGACG-GCT-------GC--TCCATTGTTCGG-CTTCCGTTTGATATTT-----------------------AT--------------------TTGTT-------------------------TA---TTCG--------GTCACCGGGTGC--GGC-CGGAAATGAT-CG---CGGT-GG-TG-TA----T-AATACTA-ATGT--ACGGTTGGTTCCTTTgcct
gi|5 : -TTTCCCTGATAG-GCAGAAGG---GG---GGGGGG---TCAAAT-CG--C-A------A-----TTCTCACAA-TAT---CATCCTGCTTGCCTCTAT-GAGGTGTTATTATTATGTTACGTGCTTCTCTTT-TTTA--TTCTATGCAGGTCCTTCGTCGAT-TTCTTTTCGATGTCTTATTTGTTT-----ATC-----------TCGATAG-ACGG-CTACC----------C-----------------------ATTGTTGGTTCCTCTTCTTTGCATGTT-------------------------TATCTTTCGTTTACTCGGTCAGAGGGTGTGCGGCTCGGAAATGAT-AAAGTCGGG-TG-TG-TATACAT-AAT-CACTATGTCATC-GTCGGTGTCTCTGAGATtgatattctcgatgtaaaattataaataaactcgaacaaatcgaaa
gi|6 : g---GGAGGGGGTGGGGTGATGGACCCC-TCTTTAT--ACT-GCTTATGTTAG----------TCTCT---TTT--AAAGA--A----T--TGAAAAATAT-TGA-TTTATTTTTA---GC--ATAA--AATTAAA--A-CATGATTT--ATAATC-CGATATA-CA-TT-T-AG-A-TCCCCGTAC--------TG-A--TC-GATTGCAGAA-------A-A---TA-CAAA-TTT-TTA-AGTTT------ACTGTAATTACTTTTTT-----ATTG-------CATG-GG-AAGCATGTT-AT---TTTTTCCCC-AAA-ATATAAA--TC---ATTAAGCAG-TGAAAAT--TGGA-TTTCCT--ATAG-CCTGAAGGGGAGG---GGGGAT---AAAAAA-AAATCGA------ATT---TTTTTACC---GTATATATACTGCTTG--TCT-T-GT-GTTTTAT-ctcgatactctctcagatgactctgaacaaaaagaaa
gi|7 : GGGGG---GGGGGGGGCGGGTCGTGGGGCCCCTTCTA-ATACACT-GCTC-TCTTAGTGGCCACCCTTCTCA--ATTTAAAAAAA--AAAAAT--TGAAAAATTTCTGATTTTATTTTCAGTGGC----CA--AATC-AAATA-CATGTTTTTGTTAATCGCGAAATA-CA-TTCT-AG-ATTC------T--------TGTA--CCGGATTGCAGAAAAAATCTA-C---CC-C--ATTTT-TTT-AGTTT------ACTG-------------------TTA-------CACG-AGAAAGCATGGTCCTCCCCCtaa
gi|8 : ATATCCTGCTTGT-TCT-TTG--GTTT----ATT-TG--ACG---TTCTTTCTCTCTT--TTCTAT-CA-G--CTTGAT-G-----CTTTT-GATGT-TTATTGTTT------ATC------------CGAAAG-ACGGACTACC----------C-----------------------AT--------------------ATGTTCGGTTCTTTATGATGGATCTTATGTTA---TTCG--------TTCAG-GGGTGC-AGGC-CGGAAATGAT-CG---CGGGATGATG-TA----T-AATACAC-AAA---TC-GTC-GTTCCTTTGAGAT
gi|9 : TTAG----------TCTTG--ATTT--AAAAA--AAA-----TGAAACATTT-TTA-TTTATTTTCA--GGC--A-AA--AA---------------------AATC-CGATATA-CA-TT-T-AG-A-TC------CCCGTGT--TG-A--CC-GATTGCAGAA-------AAT---AC-C--C-TTTATTT-AGTTTCCTATAATTA-----------CTTTTTTGTTA-------CACG-AG-AAGCATGGTAACCCCCCATTTTTTAAAA-GTGTAAtctcgatgatcaaactcgaaaatagaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAAATACACATTTATGGTCGGTTCTTTTTGATATTCTCGATGTAAAATTGTTTTTAAAAAAACCCTCGATCAAATCAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 11 11111 2222 11 111 1111 1 2222 33333333 22222 11111 22222222222 111 1111111111 1111 111 11 555555555555555 3333333333333333333333 111111 77777777777777777777777777777 222222 111 11 22222 111 111 666666666666666666666666 222222 11 2222222222222222 22222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 22222222 111 1 1 1 333333 1 111 1
lowQualScore : 5 1111 33 99999 1111 0 33 444 5555 8 88 8 8 0 8 8 8 0 4444 22222222 55555 5 66666 1 3 2 6 5 77 5 0 77777777777 5 333 888 4444444444 2 0 5 88 999 0000 66 333 9999 22 777 5 33 5 5 5 5 5 5 222222222222222 8888 6 7777777777777777777777 6 6 999999 33333333333333333333333333333 5 5 3 555555 6 3 6 66 444 0 0 8 8 11 8 99 88888 000 000 555555555555555555555555 3 111111 1 22 5 8888888888888888 77 0 888 1 5 1 77 6 5 77 88888 1 5 6 6 3 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 44444444 2 99 6 6 8 444 0 0 0 444444 3 0 1 777 0 2
lowQualScore : . .... .. ..... .... . .. ... .... . .. . . . . . . . .... ........ ..... . ..... . . . . . .. . . ........... . ... ... .......... . . . .. ... .... .. ... .... .. ... . .. . . . . . . ............... .... . ...................... . . ...... ............................. . . . ...... . . . .. ... . . . . .. . .. ..... ... ... ........................ . ...... . .. . ................ .. . ... . . . .. . . .. ..... . . . . . ............................................................................................................................. ... ........ . .. . . . ... . . . ...... . . . ... . .
lowQualScore : 5 2222 22 88888 8888 2 88 444 6666 0 88 0 0 6 0 0 0 8 9999 00000000 00000 0 77777 0 7 5 7 7 99 7 7 55555555555 0 999 999 5555555555 5 4 0 22 444 2222 99 999 1111 66 444 0 66 0 0 0 0 0 0 111111111111111 3333 7 2222222222222222222222 7 7 222222 44444444444444444444444444444 7 7 0 777777 0 2 7 22 000 8 8 0 2 00 0 22 77777 000 000 777777777777777777777777 6 111111 3 99 7 5555555555555555 99 4 000 7 7 7 99 6 7 99 66666 4 7 7 7 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 777 22222222 5 22 7 7 0 000 0 0 0 000000 2 0 0 000 0 5
consensus : NAATACCGGGTGGTG----TGGGTGCAA-CCCCCTC--CTTCAA-TA-CCCCTCCCCT--GTGAAA-CAA-TA-CACC-TAT-TAT-CATTCT-AAAGCGA-ATGACATT-TAATCTA-TTTAGTTT--ACACAA--CA-GG-GAGAA-----GGGGGGGGGG----GGGGGGGGCGGGTCGATGGGCCCC-TCTA-AT--ACT-GCTTATGTTAG----------TCT-TA--ATTT--AAAAA--AAAAAT--TGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AATT-AA--A-CATGATTT--TTAATC-CGATATA-CA-TT-T-AG-A-TC------C--------TG-A--CC-GATTGCAGAA-------A-T---CC-C--A-TTT-TTT-AGTTT------ACTG-----------CT-----ATTA-------CACG-AG-AAGCATGGT-ATCCCCCTTTCCCCAAAA-ATATAAATGTC---ATTAAACAG-TGGAAA--TTGG-ATTTCCC--ATAG-CC-GAAGG---GG---GGGGGT---ANAAA-NCG--CGAA------TTTTTACCATATAT-ATATACTGCTTGT-TCT-T-G--GTTTTAT-ATT-TG--ACGT--TTCTTTCT-TTTA--TTCTAT-CAGG--CTT-G-T-GAT-TTCTTTT-GATGT-TTATTTGTT------GTC-------GT--TCNATAG-A-CGG-CTACC----------C-----------------------AT--------------------NTGTT-------------------------TA---TTCG--------GTCAGCGG--GTGC-GGC-CGGAAATGAT-CG---CGGG-TG-TG-TAT---T-AATACAC-ANGT--TC-GTCGGTTCCTTTGAGAT
Reference ( family-135 ) : NAATACCGGGTGGTG----TGGGTGCAA-CCCCCTC--CTTCAA-TA-CCCCTCCCCT--GTGAAA-CAA-TA-CACC-TAT-TAT-CATTCT-AAAGCGA-ATGACATT-TAATCTA-TTTAGTTT--ACACAA--CA-GG-GAGAA-----GGGGGGGGGG----GGGGGGGGCGGGTCGATGGGCCCC-TCTA-AT--ACT-GCTTATGTTAG----------TCT-TA--ATTT--AAAAA--AAAAAT--TGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AATT-AA--A-CATGATTT--TTAATC-CGATATA-CA-TT-T-AG-A-TC------C--------TG-A--CC-GATTGCAGAA-------A-T---CC-C--A-TTT-TTT-AGTTT------ACTG-----------CT-----ATTA-------CACG-AG-AAGCATGGT-ATCCCCCTTTCCCCAAAA-ATATAAATGTC---ATTAAACAG-TGGAAA--TTGG-ATTTCCC--ATAG-CC-GAAGG---GG---GGGGGT---ANAAA-NCG--CGAA------TTTTTACCATATAT-ATATACTGCTTGT-TCT-T-G--GTTTTAT-ATT-TG--ACGT--TTCTTTCT-TTTA--TTCTAT-CAGG--CTT-G-T-GAT-TTCTTTT-GATGT-TTATTTGTT------GTC-------GT--TCNATAG-A-CGG-CTACC----------C-----------------------AT--------------------NTGTT-------------------------TA---TTCG--------GTCAGCGG--GTGC-GGC-CGGAAATGAT-CG---CGGG-TG-TG-TAT---T-AATACAC-ANGT--TC-GTCGGTTCCTTTGAGAT
gi|1 : AATATCGGG-GGTG----TGGGTGCAA-CTCCCTC--CTTCAAATAACCCCTCCCCT--GTGAAA-CAAATA-CACCCTAT-TAT-CATTCT-AAAGCGA-ATGACAAT-TAATCTA-TTTAGTTTTTACACAA--CAAGG-GAGAAAGAGGGGGGGGGGGGCTTTGGGGGGGGGGGGTTGATGGGCCC--TCTA-AT--ACTTGCTTATGTTA-----------TCT-TA--ATTT--GAAAATAAAAAATAATGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AACT-AA--A-CATAATTT--TTAATC-CGAT-T--CA-TT-T--G-A-TC------T--------TG-A--CC-GATTGCAGAA-------A-T---CC-C--A-TTT-TTT-AGTTT------ACTG-----------C-------CTA-------CACGCAG-AAGCATGGC-ACCCCCCCCCCCCCCAAATATATAAATGCC---ATTAAACAGTTGCAAATCTTGGAATTTCCC--ATAG-C---AACC---AG---GGGGAT---ATAAATTCA--TGA---------TTTACCA-ATATAATACACTGCATGT-TCT-T-G--GTTTTAT-ATT-TG--ACGT--TTCTTTCT-TATA--TTCTAT-CAGG--CTT-A-T-GATCTTCTTTT-GATGT-TTATTTGTT------GTC-------AT--TCCATAGCA-CGG-CTACC----------C-----------------------AT--------------------ATGTT-------------------------TA---TTCG--------GTCAGCGG--GTGC-CGG-CAAAGATGATCCA---CGGG-TG-TGTTAT---TAAATACAC-AGGT--TC-GTCGGTTTCCTTGAGAT
gi|10 : aGATGTACCCC-TCAA-AT--ACT-GC-TATGTTAG----------TCT-T--------------------AT--TCAGAGAT-----A-TTTATTTCTA---GC--ATAACCA----AA--A-TATGA-TT--ATGATC-C-ATAAATCA-TT-T-AA-A-TC------C--------
gi|11 : -TG--ATGC--TTATTTTT-TTTAAATTC-----AGA--CTT---T-GCT-TTCTTTT-GATGT-TTATTTGTTTACTCAGTCAGACTTTGTTGTCTTTTG-A-TGT-TT-------------------------------------AT--------------------TTGTT-------------------------TA---TTCA--------GTCAGCGC--GTGC-GAA-CGGAAATCTC-CG---CGccgtacacaattcataaattatatatttcatatattttaaaattgttaccgtaaatat
gi|12 : ----TGGGTGCA--CCCCCTTATCTTCAA-CA-CCCCTTCACT--GTGAA--CAA-TA--ACC-TAT-TAT-CAACAT-AA-GCAA-ATTACATT-TAATCTA-TTTAGTTT--
gi|13 : agagagagagagagagagagaagtact-AT--ACT-GCTTATGTTAG----------TCT-TA--ATTT--AAATA--TAAAA---TGAAAAATTT-TGA--TTATTTTCA--GGC--ATAA--AATTAAA--A-CATTATTT--TTAATC-AGATATA-CAGTT-TGAGCA-TCA-----C--------TG-A--t
gi|14 : GG---GG---GGGGGTTAAACAGA-ATT--CGAAAAAGA-TTTTTACCATAT----T-TACTGCTTGT-T-T-T-G-----TTGT-----CG--ATGT--TTCTTTGT-TTAA--TT-TAT-CAGA--TTT-G---GAT-TTCTTTaga
gi|15 : gggAA-CAA----CACC-TAT-TAT-CATTCT-AA-GCGA-ATGCCATTATAATCTA-TTTAGTT---ACACAT--AA-GG-GAGAA-----GGGGGAGGGG----GGGGGGGGAGG
gi|2 : gG----TGGGTGCAAACCCCCTC----TCAA--G-TCGTGTCCCT--GTGAAAACAT-CAGCACC-TATGTAT-CATTCT-AAAGCGG-ATTACATT-TAATCTA-TT-AGTTT---CACAA----------GAA-----AGGAGGGTTG------------TGGTTCGATGGGCCCC-TCTA-A--------CTCATGTT------------TCT-TGTTATTT----AAA--AAAAAT--T----AATTT-TTA---TATTTTCA--GGC--A-AA--AGGT-GA--T-CATGA-TT--TCAATC-CGAT-TA-AA-TT-T-AG-A-TC------CCCGAATCGTG-T--AC-GAGTGCAGAA-------A-----CC-C--A--TT-TTT-AGTGT------ACTT-----------CTA----ATTACTTTGTTCACA-AG-AA-CAT-------CCCTTTTCCCTAAAA-ATA-----GTC---ATT-AAC---TG--AA--TT-G-AT---CC--ATA-------------TG---GGCAGT---A-AAG-GTA--TGA---------TTTACCATATAT----CACTGCTTG--TCT-T----GTT----------------T--TTTTTTCT-CTTA--TT-TAT-CAGG--CTT-G---GAT-GTCTGT---ATGG-TTA-TTGT--------TC-------TT--CCGAGAA-T-CGG-CTACC----------CCATTGTTCACTTCTTTCGATTTTAT--------------------TTGTT-------------------------TA----TCG--------TGCAGCGG--G----GGC-CGGAAA
gi|3 : AATACTGGGTGGTGAAGGTGTGTGCAA-CCCCC----CTCCAA-TA-CCCCTCCTCTTAGTGA---CAA-TA-CACC-TAT--ATGCATTCTTAAAGCGGCATGGCATT-TAATCTAGTTTAGTT---ACACAAACCA-GGCGAGAA-----GGGAAGGG--------------CGGGTTGATG----CC-CCTA-AT--ACT-GCTTAT--TA-----------TAC-TA--ATTT--AACAA--AAAAA---------AGTT-TGA-TTAATTT-CA--GGTCAATAA--AATT-AA--AACATG--TT--TTAATC-CGA-AGA-CA-TT-T-AG-A-TC---------------TG-AAACC-GATTGCAGAA-------A-TATACCAC--A-CTT-TTTGAGTTT------ACTG------------T-----AT-A-------CACG-AT-A-TCATG--------CCTTCCCCAAAAA-ATATAAATGTCCTAATTAACTAG-TGGAAA--TTGC-ATTTCCC--ATAA-CA-GAAGG---CG---GGGGGT---ATAA----G--TG-A------TTTTTACCATATAT-g
gi|4 : gagaaacgagagagagagatagattatgaagagagagagaaaacaagactA-------CACG-AG-AAACATAGT-ATTTCCC----CCCAAAA-ACATAACTGTT---ATTAAACAA-TGGGAA--TTGG-ATTTCCC--ATAGGCT-GAAGG---GGAGTGGGGATCA-AAAGA-ATT--CGAAAAAATATTTTTACCACATAT-A----CTGCTTGT--CT-T-G---TCTTCT-ATT-TG--ATGT--TTCTTTGT-TT-A--TTTTAT-CAGA--CTT-G---GAT-TTCTTTT-GATGT-TC---TGTTAGACG-GCT-------GC--TCCATTG-TTCGG-CTTCCGTTTGATATTT-----------------------AT--------------------TTGTT-------------------------TA---TTCG--------GTCACCGG--GTGC-GGC-CGGAAATGAT-CG---CGGT-GG-TG-TA----T-AATACTA-ATGT--ACGGTTGGTTCCTTTgcct
gi|5 : TTTCCCTGATAG-GCAGAAGG---GG---GGGGGG---TCAAA-TCG--C-AA------TTCTCACAATAT----CATCCTGCTTGCCTCTAT-GAGGTGTTATTATTATGTTACGTGCTTCTCTTT-TTTA--TTCTATGCAGGTCCTTCG-TCGAT-TTCTTTTCGATGTCTTATTTGTTT-----ATC-----------TCGATAG-A-CGG-CTACC----------C-----------------------ATTGTTGGTTCCTCTTCTTTGCATGTT-------------------------TATCTTTCGTTTACTCGGTCAGAGGGTGTGC-GGCTCGGAAATGAT-AAAGTCGGG-TG-TG-TATACAT-AAT-CACTATGTCATC-GTCGGTGTCTCTGAGATtgatattctcgatgtaaaattataaataaactcgaacaaatcgaaa
gi|6 : g----GGAGGGGGTGGGGTGATGGACCCC-TCTTTAT--ACT-GCTTATGTTAG----------TCTCT----TTT--AAAGA--A----T--TGAAAAATAT-TGA-TTTATTTTTA---GC--ATAA--AATTAAA--A-CATGATTT--ATAATC-CGATATA-CA-TT-T-AG-A-TCCCCGTAC--------TG-A--TC-GATTGCAGAA-------A-A---TA-CAAA-TTT-TTA-AGTTT------ACTGTAATTACTTTTTT-----ATTG-------CATG-GG-AAGCATGTT-AT---TTTTTCCCC-AAA-ATATAAA--TC---ATTAAGCAG-TGAAAA--TTGG-ATTTCCT--ATAG-CCTGAAGGGGAGG---GGGGAT---AAAAA-AAAATCGAATT----TTTTTACC--GTAT-ATATACTGCTTG--TCT-T-GT-GTTTTAT-ctcgatactctctcagatgactctgaacaaaaagaaa
gi|7 : GGGGG----GGGGGGGGCGGGTCGTGGGGCCCCTTCTA-ATACACT-GCTC-TCTTAGTGGCCACCCTTCT-CA--ATTTAAAAAAA--AAAAAT--TGAAAAATTTCTGATTTTATTTTCAGTGGC----CA--AATC-AAATA-CATGTTTTTGTTAATCGCGAAATA-CA-TTCT-AG-ATTC------T--------TGTA--CCGGATTGCAGAAAAAATCTA-C---CC-C--ATTTT-TTT-AGTTT------ACTG-------------------TTA-------CACG-AGAAAGCATGGTCCTCCCCCtaa
gi|8 : -ATATCCTGCTTGT-TCT-TTG--GTTT----ATT-TG--ACG---TTCTTTCTCTCTT--TTCTAT-CA-G--CTT-GAT-G-----CTTTT-GATGT-TTATTGTTT------ATC------------CGAAAG-A-CGGACTACC----------C-----------------------AT--------------------ATGTTCGGTTCTTTATGATGGATCTTATGTTA---TTCG--------TTCAG-GG--GTGCAGGC-CGGAAATGAT-CG---CGGGATGATG-TA----T-AATACAC-AAA---TC-GTC-GTTCCTTTGAGAT
gi|9 : TTAG----------TCT-TG--ATTT--AAAAA--AAA-----TGAAACATTT-TTA-TTTATTTTCA--GGC--A-AA--AA---------------------AATC-CGATATA-CA-TT-T-AG-A-TC------CCCGTGT--TG-A--CC-GATTGCAGAA-------AAT---AC-C--C-TTTATTT-AGTTTCCTATAATTA-----------CTTTTTTGTTA-------CACG-AG-AAGCATGGTAACCCCCCATTTTTTAAAA-GTGTAAtctcgatgatcaaactcgaaaatagaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAAATACACATTTATGGTCGGTTCTTTTTGATATTCTCGATGTAAAATTGTTTTTAAAAAAACCCTCGATCAAATCAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 11 11111 2222 11 111 1111 1 2222 33333333 22222 11111 22222222222 111 1111111111 1111 111 11 555555555555555 3333333333333333333333 111111 77777777777777777777777777777 222222 111 11 22222 111 111 666666666666666666666666 222222 11 2222222222222222 22222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 22222222 111 1 1 1 333333 1 111 1
lowQualScore : 5 1111 33 99999 1111 0 33 444 5555 8 88 8 8 0 8 8 8 0 4444 22222222 55555 5 66666 1 3 2 6 5 77 5 0 77777777777 5 333 888 4444444444 2 0 5 88 999 0000 66 333 9999 22 777 5 33 5 5 5 5 5 5 222222222222222 8888 6 7777777777777777777777 6 6 999999 33333333333333333333333333333 5 5 3 555555 6 3 6 66 444 0 0 8 8 11 8 99 88888 000 000 555555555555555555555555 3 111111 1 22 5 8888888888888888 77 0 888 1 5 1 77 6 5 77 88888 1 5 6 6 3 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 44444444 2 99 6 6 8 444 0 0 0 444444 3 0 1 777 0 2
lowQualScore : . .... .. ..... .... . .. ... .... . .. . . . . . . . .... ........ ..... . ..... . . . . . .. . . ........... . ... ... .......... . . . .. ... .... .. ... .... .. ... . .. . . . . . . ............... .... . ...................... . . ...... ............................. . . . ...... . . . .. ... . . . . .. . .. ..... ... ... ........................ . ...... . .. . ................ .. . ... . . . .. . . .. ..... . . . . . ............................................................................................................................. ... ........ . .. . . . ... . . . ...... . . . ... . .
lowQualScore : 5 2222 22 88888 8888 2 88 444 6666 0 88 0 0 6 0 0 0 8 9999 00000000 00000 0 77777 0 7 5 7 7 99 7 7 55555555555 0 999 999 5555555555 5 4 0 22 444 2222 99 999 1111 66 444 0 66 0 0 0 0 0 0 111111111111111 3333 7 2222222222222222222222 7 7 222222 44444444444444444444444444444 7 7 0 777777 0 2 7 22 000 8 8 0 2 00 0 22 77777 000 000 777777777777777777777777 6 111111 3 99 7 5555555555555555 99 4 000 7 7 7 99 6 7 99 66666 4 7 7 7 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 777 22222222 5 22 7 7 0 000 0 0 0 000000 2 0 0 000 0 5
consensus : NAATACCGGGTGGTG----TGGGTGCAA-CCCCCTC--CTTCAA-TA-CCCCTCCCCT--GTGAAA-CAA-TA-CACC-TAT-TAT-CATTCT-AAAGCGA-ATGACATT-TAATCTA-TTTAGTTT--ACACAA--CA-GG-GAGAA-----GGGGGGGGGG----GGGGGGGGCGGGTCGATGGGCCCC-TCTA-AT--ACT-GCTTATGTTAG----------TCT-TA--ATTT--AAAAA--AAAAAT--TGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AATT-AA--A-CATGATTT--TTAATC-CGATATA-CA-TT-T-AG-A-TC------C--------TG-A--CC-GATTGCAGAA-------A-T---CC-C--A-TTT-TTT-AGTTT------ACTG-----------CT-----ATTA-------CACG-AG-AAGCATGGT-ATCCCCCTTTCCCCAAAA-ATATAAATGTC---ATTAAACAG-TGGAAA--TTGG-ATTTCCC--ATAG-CC-GAAGG---GG---GGGGGT---ANAAA-NCG--CGAA------TTTTTACCATATAT-ATATACTGCTTGT-TCT-T-G--GTTTTAT-ATT-TG--ACGT--TTCTTTCT-TTTA--TTCTAT-CAGG--CTT-G-T-GAT-TTCTTTT-GATGT-TTATTTGTT------GTC-------GT--TCNATAG-A-CGG-CTACC----------C-----------------------AT--------------------NTGTT-------------------------TA---TTCG--------GTCAGCGG--GTGC-GGC-CGGAAATGAT-CG---CGGG-TG-TG-TAT---T-AATACAC-ANGT--TC-GTCGGTTCCTTTGAGAT
Reference ( family-135 ) : NAATACCGGGTGGTG----TGGGTGCAA-CCCCCTC--CTTCAA-TA-CCCCTCCCCT--GTGAAA-CAA-TA-CACC-TAT-TAT-CATTCT-AAAGCGA-ATGACATT-TAATCTA-TTTAGTTT--ACACAA--CA-GG-GAGAA-----GGGGGGGGGG----GGGGGGGGCGGGTCGATGGGCCCC-TCTA-AT--ACT-GCTTATGTTAG----------TCT-TA--ATTT--AAAAA--AAAAAT--TGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AATT-AA--A-CATGATTT--TTAATC-CGATATA-CA-TT-T-AG-A-TC------C--------TG-A--CC-GATTGCAGAA-------A-T---CC-C--A-TTT-TTT-AGTTT------ACTG-----------CT-----ATTA-------CACG-AG-AAGCATGGT-ATCCCCCTTTCCCCAAAA-ATATAAATGTC---ATTAAACAG-TGGAAA--TTGG-ATTTCCC--ATAG-CC-GAAGG---GG---GGGGGT---ANAAA-NCG--CGAA------TTTTTACCATATAT-ATATACTGCTTGT-TCT-T-G--GTTTTAT-ATT-TG--ACGT--TTCTTTCT-TTTA--TTCTAT-CAGG--CTT-G-T-GAT-TTCTTTT-GATGT-TTATTTGTT------GTC-------GT--TCNATAG-A-CGG-CTACC----------C-----------------------AT--------------------NTGTT-------------------------TA---TTCG--------GTCAGCGG--GTGC-GGC-CGGAAATGAT-CG---CGGG-TG-TG-TAT---T-AATACAC-ANGT--TC-GTCGGTTCCTTTGAGAT
gi|1 : AATATCGGG-GGTG----TGGGTGCAA-CTCCCTC--CTTCAAATAACCCCTCCCCT--GTGAAA-CAAATA-CACCCTAT-TAT-CATTCT-AAAGCGA-ATGACAAT-TAATCTA-TTTAGTTTTTACACAA--CAAGG-GAGAAAGAGGGGGGGGGGGGCTTTGGGGGGGGGGGGTTGATGGGCCC--TCTA-AT--ACTTGCTTATGTTA-----------TCT-TA--ATTT--GAAAATAAAAAATAATGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AACT-AA--A-CATAATTT--TTAATC-CGAT-T--CA-TT-T--G-A-TC------T--------TG-A--CC-GATTGCAGAA-------A-T---CC-C--A-TTT-TTT-AGTTT------ACTG-----------C-------CTA-------CACGCAG-AAGCATGGC-ACCCCCCCCCCCCCCAAATATATAAATGCC---ATTAAACAGTTGCAAATCTTGGAATTTCCC--ATAG-C---AACC---AG---GGGGAT---ATAAATTCA--TGA---------TTTACCA-ATATAATACACTGCATGT-TCT-T-G--GTTTTAT-ATT-TG--ACGT--TTCTTTCT-TATA--TTCTAT-CAGG--CTT-A-T-GATCTTCTTTT-GATGT-TTATTTGTT------GTC-------AT--TCCATAGCA-CGG-CTACC----------C-----------------------AT--------------------ATGTT-------------------------TA---TTCG--------GTCAGCGG--GTGC-CGG-CAAAGATGATCCA---CGGG-TG-TGTTAT---TAAATACAC-AGGT--TC-GTCGGTTTCCTTGAGAT
gi|10 : aGATGTACCCC-TCAA-AT--ACT-GC-TATGTTAG----------TCT-T--------------------AT--TCAGAGAT-----A-TTTATTTCTA---GC--ATAACCA----AA--A-TATGA-TT--ATGATC-C-ATAAATCA-TT-T-AA-A-TC------C--------
gi|11 : -TG--ATGC--TTATTTTT-TTTAAATTC-----AGA--CTT---T-GCT-TTCTTTT-GATGT-TTATTTGTTTACTCAGTCAGACTTTGTTGTCTTTTG-A-TGT-TT-------------------------------------AT--------------------TTGTT-------------------------TA---TTCA--------GTCAGCGC--GTGC-GAA-CGGAAATCTC-CG---CGccgtacacaattcataaattatatatttcatatattttaaaattgttaccgtaaatat
gi|12 : ----TGGGTGCA--CCCCCTTATCTTCAA-CA-CCCCTTCACT--GTGAA--CAA-TA--ACC-TAT-TAT-CAACAT-AA-GCAA-ATTACATT-TAATCTA-TTTAGTTT--
gi|13 : agagagagagagagagagagaagtact-AT--ACT-GCTTATGTTAG----------TCT-TA--ATTT--AAATA--TAAAA---TGAAAAATTT-TGA--TTATTTTCA--GGC--ATAA--AATTAAA--A-CATTATTT--TTAATC-AGATATA-CAGTT-TGAGCA-TCA-----C--------TG-A--t
gi|14 : GG---GG---GGGGGTTAAACAGA-ATT--CGAAAAAGA-TTTTTACCATAT----T-TACTGCTTGT-T-T-T-G-----TTGT-----CG--ATGT--TTCTTTGT-TTAA--TT-TAT-CAGA--TTT-G---GAT-TTCTTTaga
gi|15 : gggAA-CAA----CACC-TAT-TAT-CATTCT-AA-GCGA-ATGCCATTATAATCTA-TTTAGTT---ACACAT--AA-GG-GAGAA-----GGGGGAGGGG----GGGGGGGGAGG
gi|2 : gG----TGGGTGCAAACCCCCTC----TCAA--G-TCGTGTCCCT--GTGAAAACAT-CAGCACC-TATGTAT-CATTCT-AAAGCGG-ATTACATT-TAATCTA-TT-AGTTT---CACAA----------GAA-----AGGAGGGTTG------------TGGTTCGATGGGCCCC-TCTA-A--------CTCATGTT------------TCT-TGTTATTT----AAA--AAAAAT--T----AATTT-TTA---TATTTTCA--GGC--A-AA--AGGT-GA--T-CATGA-TT--TCAATC-CGAT-TA-AA-TT-T-AG-A-TC------CCCGAATCGTG-T--AC-GAGTGCAGAA-------A-----CC-C--A--TT-TTT-AGTGT------ACTT-----------CTA----ATTACTTTGTTCACA-AG-AA-CAT-------CCCTTTTCCCTAAAA-ATA-----GTC---ATT-AAC---TG--AA--TT-G-AT---CC--ATA-------------TG---GGCAGT---A-AAG-GTA--TGA---------TTTACCATATAT----CACTGCTTG--TCT-T----GTT----------------T--TTTTTTCT-CTTA--TT-TAT-CAGG--CTT-G---GAT-GTCTGT---ATGG-TTA-TTGT--------TC-------TT--CCGAGAA-T-CGG-CTACC----------CCATTGTTCACTTCTTTCGATTTTAT--------------------TTGTT-------------------------TA----TCG--------TGCAGCGG--G----GGC-CGGAAA
gi|3 : AATACTGGGTGGTGAAGGTGTGTGCAA-CCCCC----CTCCAA-TA-CCCCTCCTCTTAGTGA---CAA-TA-CACC-TAT--ATGCATTCTTAAAGCGGCATGGCATT-TAATCTAGTTTAGTT---ACACAAACCA-GGCGAGAA-----GGGAAGGG--------------CGGGTTGATG----CC-CCTA-AT--ACT-GCTTAT--TA-----------TAC-TA--ATTT--AACAA--AAAAA---------AGTT-TGA-TTAATTT-CA--GGTCAATAA--AATT-AA--AACATG--TT--TTAATC-CGA-AGA-CA-TT-T-AG-A-TC---------------TG-AAACC-GATTGCAGAA-------A-TATACCAC--A-CTT-TTTGAGTTT------ACTG------------T-----AT-A-------CACG-AT-A-TCATG--------CCTTCCCCAAAAA-ATATAAATGTCCTAATTAACTAG-TGGAAA--TTGC-ATTTCCC--ATAA-CA-GAAGG---CG---GGGGGT---ATAA----G--TG-A------TTTTTACCATATAT-g
gi|4 : gagaaacgagagagagagatagattatgaagagagagagaaaacaagactA-------CACG-AG-AAACATAGT-ATTTCCC----CCCAAAA-ACATAACTGTT---ATTAAACAA-TGGGAA--TTGG-ATTTCCC--ATAGGCT-GAAGG---GGAGTGGGGATCA-AAAGA-ATT--CGAAAAAATATTTTTACCACATAT-A----CTGCTTGT--CT-T-G---TCTTCT-ATT-TG--ATGT--TTCTTTGT-TT-A--TTTTAT-CAGA--CTT-G---GAT-TTCTTTT-GATGT-TC---TGTTAGACG-GCT-------GC--TCCATTG-TTCGG-CTTCCGTTTGATATTT-----------------------AT--------------------TTGTT-------------------------TA---TTCG--------GTCACCGG--GTGC-GGC-CGGAAATGAT-CG---CGGT-GG-TG-TA----T-AATACTA-ATGT--ACGGTTGGTTCCTTTgcct
gi|5 : TTTCCCTGATAG-GCAGAAGG---GG---GGGGGG---TCAAA-TCG--C-AA------TTCTCACAATAT----CATCCTGCTTGCCTCTAT-GAGGTGTTATTATTATGTTACGTGCTTCTCTTT-TTTA--TTCTATGCAGGTCCTTCG-TCGAT-TTCTTTTCGATGTCTTATTTGTTT-----ATC-----------TCGATAG-A-CGG-CTACC----------C-----------------------ATTGTTGGTTCCTCTTCTTTGCATGTT-------------------------TATCTTTCGTTTACTCGGTCAGAGGGTGTGC-GGCTCGGAAATGAT-AAAGTCGGG-TG-TG-TATACAT-AAT-CACTATGTCATC-GTCGGTGTCTCTGAGATtgatattctcgatgtaaaattataaataaactcgaacaaatcgaaa
gi|6 : g----GGAGGGGGTGGGGTGATGGACCCC-TCTTTAT--ACT-GCTTATGTTAG----------TCTCT----TTT--AAAGA--A----T--TGAAAAATAT-TGA-TTTATTTTTA---GC--ATAA--AATTAAA--A-CATGATTT--ATAATC-CGATATA-CA-TT-T-AG-A-TCCCCGTAC--------TG-A--TC-GATTGCAGAA-------A-A---TA-CAAA-TTT-TTA-AGTTT------ACTGTAATTACTTTTTT-----ATTG-------CATG-GG-AAGCATGTT-AT---TTTTTCCCC-AAA-ATATAAA--TC---ATTAAGCAG-TGAAAA--TTGG-ATTTCCT--ATAG-CCTGAAGGGGAGG---GGGGAT---AAAAA-AAAATCGAATT----TTTTTACC--GTAT-ATATACTGCTTG--TCT-T-GT-GTTTTAT-ctcgatactctctcagatgactctgaacaaaaagaaa
gi|7 : GGGGG----GGGGGGGGCGGGTCGTGGGGCCCCTTCTA-ATACACT-GCTC-TCTTAGTGGCCACCCTTCT-CA--ATTTAAAAAAA--AAAAAT--TGAAAAATTTCTGATTTTATTTTCAGTGGC----CA--AATC-AAATA-CATGTTTTTGTTAATCGCGAAATA-CA-TTCT-AG-ATTC------T--------TGTA--CCGGATTGCAGAAAAAATCTA-C---CC-C--ATTTT-TTT-AGTTT------ACTG-------------------TTA-------CACG-AGAAAGCATGGTCCTCCCCCtaa
gi|8 : -ATATCCTGCTTGT-TCT-TTG--GTTT----ATT-TG--ACG---TTCTTTCTCTCTT--TTCTAT-CA-G--CTT-GAT-G-----CTTTT-GATGT-TTATTGTTT------ATC------------CGAAAG-A-CGGACTACC----------C-----------------------AT--------------------ATGTTCGGTTCTTTATGATGGATCTTATGTTA---TTCG--------TTCAG-GG--GTGCAGGC-CGGAAATGAT-CG---CGGGATGATG-TA----T-AATACAC-AAA---TC-GTC-GTTCCTTTGAGAT
gi|9 : TTAG----------TCT-TG--ATTT--AAAAA--AAA-----TGAAACATTT-TTA-TTTATTTTCA--GGC--A-AA--AA---------------------AATC-CGATATA-CA-TT-T-AG-A-TC------CCCGTGT--TG-A--CC-GATTGCAGAA-------AAT---AC-C--C-TTTATTT-AGTTTCCTATAATTA-----------CTTTTTTGTTA-------CACG-AG-AAGCATGGTAACCCCCCATTTTTTAAAA-GTGTAAtctcgatgatcaaactcgaaaatagaaa
blockSeqs : T AAGG AA TTATC CA TA AAA CAG . GT G T A C A G A ACCAGGC . G G G A T T T AC . GTGGCCACCCT C GTT AAA AAAAAT C C TT GTG CAAT CC TTA ATA AT TGT G TA T G C G C T CCCGAATCG AAA G AAAATCTACCCCATT A G CCTATA TAATTACTTTTTTATTG . A T GTCCTC T A . AT CTA . G . . TG GGCT GGA AGT TAAACAGAATTCGAAAAAGA T ATATA A CC A GAGGTGTTATTATTA TT TGC T C T AA C G TC CGTC C . C C T ATCCGAAAGACGGACTACCCATATGTTCGGTTCTTTATGATGGATCTTATGT TCT TTTACTCG C GT A T . AGT A A . TACAT A T T TCA G G
blockSeqs : . A TC TA . AA TA . T . . A . . . T AAGG . T G A T G . . . . G . A A AAAAAT G . T G AT . TTA AA AT A . TA . . . . . . CCCGTAC TA . ATATACCACAC . . . CTAATTACTTTGTT . . A GTAACC T A . CT . . G . . . GGCA . . CAAAAGAATTCGAAAAAATA T ATA A T . GTCTTCTATT . C G . A . T . . GAT A . . . T TCTTCCGAGAATCGGCTACCCCATTGTTCACTTCTTTCGATTTTATTTGTT . . C . . . . . . . . T A . T T . G
blockSeqs : . . C G . A TA . T . . . . . . A . . G G G C G . . . . G . A A TAAAA G . T G AT . GT A TT T . TA . . . . . . CCCGTGT A . AATACAAAT . . . CTTTTTTGTTA . . G GTATT T A . A . . A . . . GCCT . . AAAAAAAAATCGAATT T AT C T . TGGTTTATT . T C . T . C . . T A . . . T TATCTCGATAGACGGCTACCCATTGTTGGTTCCTCTTCTTTGCATGTT . . C . . . . . . . . T . . A . . .
blockSeqs : . . . . . . . . . . . . . T G . . . . G . A A AAAAA G . T G AT . TT A A T . AA . . . . . . AC T . AATACCCT . . . TATA . . G TTAT A A . . . . . . . . ACA . . TCAAATCGCAA C CA A T . GTTGT . T G . T . C . . G A . . . . AGACGGCTGCTCCATTGTTCGGCTTCCGTTTGATATTTATTTGTT . . A . . . . .
blockSeqs : . . C . . . . . G . G A AAA G . T G A . TC T A T . TA . . . . . . C A . ACCCA . . . TTA . . G . . . . . . . . AAAGGTATGA T T C . . GTT . T T . T . . . . G A . . . . TACTCAGTCAGACTTTGTTGTCTTTTGATGTTTATTTGTT . . . . . .
blockSeqs : . . . . . . . AT . . . . A . . A . A . T . . . . . . T A . . . . . . ATAAGTGA . . . . . . C . . . . . . G . .
blockSeqs : . . . . AT . . . . . . . . . . . A . . . . . . .
blockSeqCons : CA** G**** G********** AAAAAT**** TA AATACCCAT************* CTTTTTTATTA****************** GTAC** ** GGCT* AAAAGAATTCGAAAAGTA****** ATA*** GTGTTTATT******* G****
originalCons : NAATACCGGGTGGTG----TGGGTGCAA-CCCCCTC--CTTCAA-TA-CCCCTCCCCT--GTGAAA-CAA-TA-CACC-TAT-TAT-CATTCT-AAAGCGA-ATGACATT-TAATCTA-TTTAGTTT--ACACAA--CA-GG-GAGAA-----GGGGGGGGGG----GGGGGGGGCGGGTCGATGGGCCCC-TCTA-AT--ACT-GCTTATGTTAG----------TCT-TA--ATTT--AAAAA--AAAAAT--TGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AATT-AA--A-CATGATTT--TTAATC-CGATATA-CA-TT-T-AG-A-TC------C--------TG-A--CC-GATTGCAGAA-------A-T---CC-C--A-TTT-TTT-AGTTT------ACTG-----------CT-----ATTA-------CACG-AG-AAGCATGGT-ATCCCCCTTTCCCCAAAA-ATATAAATGTC---ATTAAACAG-TGGAAA--TTGG-ATTTCCC--ATAG-CC-GAAGG---GG---GGGGGT---ANAAA-NCG--CGAA------TTTTTACCATATAT-ATATACTGCTTGT-TCT-T-G--GTTTTAT-ATT-TG--ACGT--TTCTTTCT-TTTA--TTCTAT-CAGG--CTT-G-T-GAT-TTCTTTT-GATGT-TTATTTGTT------GTC-------GT--TCNATAG-A-CGG-CTACC----------C-----------------------AT--------------------NTGTT-------------------------TA---TTCG--------GTCAGCGG--GTGC-GGC-CGGAAATGAT-CG---CGGG-TG-TG-TAT---T-AATACAC-ANGT--TC-GTCGGTTCCTTTGAGAT
finalCons : NAATACCGGGTGGTG----TGGGTGCAA-CCCCCTC--CTTCAA-TA-CCCCTCCCCT--GTGAAA-CAACA--CACC-TAT-TAT-CATTCT-AAAGCGA-ATGACATT-TAATCTA-TTTAGTTT--ACACAA--CA-GG-GAGAA-----GGGGGGGGGGG----GGGGGGGCGGGTCGATGGGCCCC-TCTA-AT--ACT-GCTTATGTTAG----------TCT-TA--ATTT--AAAAAAAAAAT----TGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AATT-AA--A-CATGATTT--TTAATC-CGATATA-CA-TT-T-AG-A-TC------C--------TG-A--CC-GATTGCAGAAAATACCCAT-------------TT-TTT-AGTTT------ACTGCTTTTTTATTA------------------CACG-AG-AAGCATGGTAC--CCCCTTTCCCCAAAA-ATATAAATGTC---ATTAAACAG-TGGAAA--TTGG-ATTTCCC--ATAGGCT-GAAGG---GG---GGGGGTAAAAGAATTCGAAAAGTA------TTTTTACCATATATA---TACTGCTTGT-TCT-TGTGTTTATT-------TG--ACGT--TTCTTTCT-TTTA--TTCTAT-CAGG--CTTG----GAT-TTCTTTT-GATGT-TTATTTGTT------GTC-------GT--TCNATAG-A-CGG-CTACC----------C-----------------------AT--------------------NTGTT-------------------------TA---TTCG--------GTCAGCGG--GTGC-GGC-CGGAAATGAT-CG---CGGG-TG-TG-TAT---T-AATACAC-ANGT--TC-GTCGGTTCCTTTGAGAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAAATACACATTTATGGTCGGTTCTTTTTGATATTCTCGATGTAAAATTGTTTTTAAAAAAACCCTCGATCAAATCAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 11 11111 2222 11 1 1111 33333333 333333 1111 22222222222 111 2222222222 11 1111 111 11 444444444444444 11 111111111 111111 6666666666666666666 2222222 111 11 22222 111 111 6666666666666666666666 11 44444444444 1111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 22222222 111 1 1 1 333333 1 111 1
lowQualScore : 5 1111 33 99999 1111 0 33 3 88 8 888 8 88 8 8 0 8 8 8 0 0 5555 22222222 111111 0 4444 3 2 6 5 77 5 77777777777 5 333 888 6666666666 2 0 5 44 999 0000 66 888 66 22 777 5 33 5 5 5 5 5 5 555555555555555 33 6 666666666 6 88 6 999999 8888888888888888888 0 5 5 3 9999999 6 66 444 0 0 8 8 11 8 99 00000 000 000 66 1111111111111111111111 55 88 5 99 5 44444444444 1 5 77 0 888 5 5 77 6 5 77 5555 1 5 6 6 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 44444444 2 99 6 6 8 444 0 0 0 444444 3 0 1 777 0 2
lowQualScore : . .... .. ..... .... . .. . .. . ... . .. . . . . . . . . .... ........ ...... . .... . . . . .. . ........... . ... ... .......... . . . .. ... .... .. ... .. .. ... . .. . . . . . . ............... .. . ......... . .. . ...... ................... . . . . ....... . .. ... . . . . .. . .. ..... ... ... .. ...................... .. .. . .. . ........... . . .. . ... . . .. . . .. .... . . . . ............................................................................................................................ ... ........ . .. . . . ... . . . ...... . . . ... . .
lowQualScore : 5 2222 22 88888 8888 2 88 2 88 0 888 0 88 0 0 6 0 0 0 8 8 1111 00000000 555555 2 2222 7 5 7 7 99 7 55555555555 0 999 999 5555555555 5 4 0 44 444 2222 99 999 99 66 444 0 66 0 0 0 0 0 0 999999999999999 66 7 777777777 7 33 7 222222 0000000000000000000 1 7 7 0 6666666 0 22 000 8 8 0 2 00 0 22 55555 000 000 11 9999999999999999999999 99 22 0 99 7 44444444444 4 0 99 4 000 3 7 99 6 7 99 1111 4 7 7 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 777 22222222 5 22 7 7 0 000 0 0 0 000000 2 0 0 000 0 5
consensus : NAATACCGGGTGGTG----TGGGTGCAA-CCCCCTC--CTTCAA-TA-CCCCTCCCCT--GTGAAA-CAA-TA-CACC-TAT-TAT-CATTC-TAAAGCGA-ATGACATT-TAATCTA-TTTAGTTT--ACACAA--CA-GG-GAGAA-----GGGGGGGGGG----GGGGGGGGCGGGTCGATGGGCCCC-TCTA-AT--ACT-GCTTATGTTAG----------TCT-TA--ATTT--AAAAA--AAAAAT--TGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AATTAAA--ACATGATTT--TTAATC-CGATATA-CA-TT-T-AG-A-TC------C--------TG--ACC-GATTGCAGAAA-A----TA-CC-CA-TTTTTT-AGTTT------ACTG------CT--TT--TTTGTTACACG-AG-AAGCATGGTA--CCCCCTTTCCCCAAAAATATAAATGTC---ATTAAACAG-TGGAAA--TTGG-ATTTCCC--ATAGGCTGAAGG---GG---GGGGG-T-AAA-AGAATTCG-AAAA-T-ATTTTTACC-ATAT-ATATACTGCTTGT-TCT-TG---TG-TT---TATT-TG--ACGT--TTCTTTCT-TTTA--TTCTAT-CAGG--CTT-G--GAT-TTCTTTT-GATGT-TTATTTGTT------GTC-------GT--TCNATAG-ACGG-CTACC----------C-----------------------AT--------------------NTGTT-------------------------TA---TTCG--------GTCAGCGG--GTGC-GGC-CGGAAATGAT-CG---CGGG-TG-TG-TAT---T-AATACAC-ANGT--TC-GTCGGTTCCTTTGAGAT
Reference ( family-135 ) : NAATACCGGGTGGTG----TGGGTGCAA-CCCCCTC--CTTCAA-TA-CCCCTCCCCT--GTGAAA-CAA-CA-CACC-TAT-TAT-CATTC-TAAAGCGA-ATGACATT-TAATCTA-TTTAGTTT--ACACAA--CA-GG-GAGAA-----GGGGGGGGGG----GGGGGGGGCGGGTCGATGGGCCCC-TCTA-AT--ACT-GCTTATGTTAG----------TCT-TA--ATTT--AAAAA--AAAAAT--TGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AATT-AA--ACATGATTT--TTAATC-CGATATA-CA-TT-T-AG-A-TC------C--------TG--ACC-GATTGCAGAAA-A----TA-CC-CA-TTTTTT-AGTTT------ACTG------CT--TT--TTTATTACACG-AG-AAGCATGGTA--CCCCCTTTCCCCAAAAATATAAATGTC---ATTAAACAG-TGGAAA--TTGG-ATTTCCC--ATAGGCTGAAGG---GG---GGGGG-T-AAA-AGAATTCG-AAAAGT-ATTTTTACC-ATAT-ATATACTGCTTGT-TCT-TG---TG-TT---TATT-TG--ACGT--TTCTTTCT-TTTA--TTCTAT-CAGG--CTT-G--GAT-TTCTTTT-GATGT-TTATTTGTT------GTC-------GT--TCNATAG-ACGG-CTACC----------C-----------------------AT--------------------NTGTT-------------------------TA---TTCG--------GTCAGCGG--GTGC-GGC-CGGAAATGAT-CG---CGGG-TG-TG-TAT---T-AATACAC-ANGT--TC-GTCGGTTCCTTTGAGAT
gi|1 : AATATCGGG-GGTG----TGGGTGCAA-CTCCCTC--CTTCAAATAACCCCTCCCCT--GTGAAA-CAAATA-CACCCTAT-TAT-CATTC-TAAAGCGA-ATGACAAT-TAATCTA-TTTAGTTTTTACACAA--CAAGG-GAGAAAGAGGGGGGGGGGGGCTTTGGGGGGGGGGGGTTGATGGGCCC--TCTA-AT--ACTTGCTTATGTTA-----------TCT-TA--ATTT--GAAAATAAAAAATAATGAAAAATTT-TGA-TTTATTTTCA--GGC--ATAA--AACT-AA--ACATAATTT--TTAATC-CGAT-T--CA-TT-T--G-A-TC------T--------TG--ACC-GATTGCAG-AA-A----T--CC-CA-TTTTTT-AGTTT------ACTG------C-----------CTACACGCAG-AAGCATGGCACCCCCCCCCCCCCCAAATATATAAATGCC---ATTAAACAGTTGCAAATCTTGGAATTTCCC--ATA-GC--AACC---AG---GGGGA-T-ATA---AATTCA-TGA-------TTTACCAATATAATACACTGCATGT-TCT-TG----G-TTTTATATT-TG--ACGT--TTCTTTCT-TATA--TTCTAT-CAGG--CTT-AT-GATCTTCTTTT-GATGT-TTATTTGTT------GTC-------AT--TCCATAGCACGG-CTACC----------C-----------------------AT--------------------ATGTT-------------------------TA---TTCG--------GTCAGCGG--GTGC-CGG-CAAAGATGATCCA---CGGG-TG-TGTTAT---TAAATACAC-AGGT--TC-GTCGGTTTCCTTGAGAT
gi|10 : aGATGTACCCC-TCAA-AT--ACT-GC-TATGTTAG----------TCT-T--------------------AT--TCAGAGAT-----A-TTTATTTCTA---GC--ATAACCA----AA--ATATGA-TT--ATGATC-C-ATAAATCA-TT-T-AA-A-TC------C--------
gi|11 : -TG--ATGC--TTATTTTT-TTTAAATTC-----AGA--CTT-T--GCT-TTCTTTT-GATGT-TTATTTGTTTACTCAGTCAGACTTTGTTGTCTTTTG-ATGT-TT-------------------------------------AT--------------------TTGTT-------------------------TA---TTCA--------GTCAGCGC--GTGC-GAA-CGGAAATCTC-CG---CGccgtacacaattcataaattatatatttcatatattttaaaattgttaccgtaaatat
gi|12 : ----TGGGTGCA--CCCCCTTATCTTCAA-CA-CCCCTTCACT--GTGAA--CAA-TA--ACC-TAT-TAT-CAACA-TAA-GCAA-ATTACATT-TAATCTA-TTTAGTTT--
gi|13 : agagagagagagagagagagaagtact-AT--ACT-GCTTATGTTAG----------TCT-TA--ATTT--AAATA--TAAAA---TGAAAAATTT-TGA--TTATTTTCA--GGC--ATAA--AATTAAA--ACATTATTT--TTAATC-AGATATA-CAGTT-TGAGCA-TCA-----C--------TG--At
gi|14 : GG---GG---GGGGT-T-AAACAGAATTCG-AAAAAG-ATTTTTACC-ATAT--T-TACTGCTTGT-T-T-TG-------T---TG-T-CG--ATGT--TTCTTTGT-TTAA--TT-TAT-CAGA--TTT-G--GAT-TTCTTTaga
gi|15 : ggggAA-CAA-CA-C--C-TAT-TAT-CATTC-TAA-GCGA-ATGCCATTATAATCTA-TTTAGTT---ACACAT--AA-GG-GAGAA-----GGGGGAGGGG----GGGGGGGGAGG
gi|2 : gG----TGGGTGCAAACCCCCTC----TCAA--G-TCGTGTCCCT--GTGAAAACAT-CAGCACC-TATGTAT-CATTC-TAAAGCGG-ATTACATT-TAATCTA-TT-AGTTT---CACAA----------GAA-----AGGAGGGTTG------------TGGTTCGATGGGCCCC-TCTA-A--------CTCATGTT------------TCT-TGTTATTT----AAA--AAAAAT--T----AATTT-TTA---TATTTTCA--GGC--A-AA--AGGT-GA--TCATGA-TT--TCAATC-CGAT-TA-AA-TT-T-AG-A-TC------CCCGAATCGTG--TAC-GAGTGCAGAA--------A-CC-CA--TTTTT-AGTGT------ACTT------CTAATTACTTTGTT-CACA-AG-AA-CAT-------CCCTTTTCCCTAAAAATA-----GTC---ATT-AAC---TG--AA--TT-G-AT---CC--ATA---T---------G---GGCAG-T-AAA-GGTAT--G-A---------TTTACC-ATAT-AT-CACTGCTTG--TCT-TG---T--T----------------T--TTTTTTCT-CTTA--TT-TAT-CAGG--CTT-G--GAT-GTCTGT---ATGG-TTA-TTGT--------TC-------TT--CCGAGAA-TCGG-CTACC----------CCATTGTTCACTTCTTTCGATTTTAT--------------------TTGTT-------------------------TA----TCG--------TGCAGCGG--G----GGC-CGGAAA
gi|3 : AATACTGGGTGGTGAAGGTGTGTGCAA-CCCCC----CTCCAA-TA-CCCCTCCTCTTAGTG--A-CAA-TA-CACC-TA--TATGCATTCTTAAAGCGGCATGGCATT-TAATCTAGTTTAG-TT--ACACAAACCA-GGCGAGAA-------------------GGGAAGGGCGGGTTGATG----CC-CCTA-AT--ACT-GCTTA--TTA-----------TAC-TA--ATTT--AACAA--A---------AAAAAGTT-TGA--TTAATTTCA--GGTCAATAA--AATTAAA--ACATG--TT--TTAATC-CGA-AGA-CA-TT-T-AG-A-T-------C--------TGAAACC-GATTGCAGAAATA----TA-CCACA-CTTTTTGAGTTT------ACTG----------------TA-TACACG-AT--ATCATG--------CCTTCCCCAAAAAATATAAATGTCCTAATTAACTAG-TGGAAA--TTGC-ATTTCCC--ATA-ACAGAAGG---CG---GGGGG-T--------AT------AAGTGATTTTTACC-ATAT-ATg
gi|4 : gagaaacgagagagagagatagattatgaagagagagagaaaacaagactACACG-AG-AAACATAGTA--TTTCC---CCCCAAAAACATAACTGTT---ATTAAACAA-TGGGAA--TTGG-ATTTCCC--ATAGGCTGAAGG---GGAGTGGGGA-TCAAA-AGAATTCGAAAAAAT-ATTTTTACC---AC-ATATACTGCTTG--TCT-TG---TC-TTC--TATT-TG--ATGT--TTCTTT-G-TTTA--TTTTAT-CAGA--CTT-G--GAT-TTCTTTT-GATGT----TCTGTTAGACG-GCT-------GC--TCCATTGTTCGG-CTTCCGTTTGATATTT-----------------------AT--------------------TTGTT-------------------------TA---TTCG--------GTCACCGG--GTGC-GGC-CGGAAATGAT-CG---CGGT-GG-TG-TA----T-AATACTA-ATGT--ACGGTTGGTTCCTTTgcct
gi|5 : TTTCCCTGATAGGCAGAAGG---GG---GGGGGGT-CAA-A----TCG-CAA-----TTCTCACA-ATAT--CATCCTGCTTGCCTCTATGAGGTG-TTAT-TATTATGTTACGTGCTTCTCTTT-TTTA--TTCTATGCAGGTCCTTCGTCGAT-TTCTTTTCGATGTCTTATTTGTTT-----ATC-----------TCGATAG-ACGG-CTACC----------C-----------------------ATTGTTGGTTCCTCTTCTTTGCATGTT-------------------------TATCTTTCGTTTACTCGGTCAGAGGGTGTGC-GGCTCGGAAATGAT-AAAGTCGGG-TG-TG-TATACAT-AAT-CACTATGTCATC-GTCGGTGTCTCTGAGATtgatattctcgatgtaaaattataaataaactcgaacaaatcgaaa
gi|6 : g----GGAGGGGGTGGGGTGATGGACCCC-TCTTTAT--ACT-GCTTATGTTAG----------TCTCT----TTT--AAAGA--A----T--TGAAAAATAT-TGA-TTTATTTTTA---GC--ATAA--AATTAAA--ACATGATTT--ATAATC-CGATATA-CA-TT-T-AG-A-TCCCCGTAC--------TG--ATC-GATTGCAGAAA-A----TA-CA-AA-TTTTTA-AGTTT------ACTGTAATTACT--TT--TTTATTGCATG-GG-AAGCATGTTA----TTTTTTCCCC-AAAATATAAA--TC---ATTAAGCAG-TGAAAA--TTGG-ATTTCCT--ATAGCCTGAAGGGGAGG---GGGGA-TAAAA-AAAAATCG-AA---T-TTTTTTACC-GTAT-ATATACTGCTTG--TCT-TG---TGTTT---TATT-ctcgatactctctcagatgactctgaacaaaaagaaa
gi|7 : GGGGG----GGGGGGGGCGGGTCGTGGGGCCCCTTCTA-ATACACT-GCTC-TCTTAGTGGCCACCCTTCT-CA--ATTTAAAAAAA--AAAAAT--TGAAAAATTTCTGATTTTATTTTCAGTGGC----CA--AATC-AAATACATGTTTTTGTTAATCGCGAAATA-CA-TTCT-AG-ATTC------T--------TGT-ACCGGATTGCAGAAA-AAATCTACCC-CATTTTTTT-AGTTT------ACTG------------------TTACACG-AGAAAGCATGGTC--CTCCCaa
gi|8 : -ATATCCTGCTTGT-TCT-TT---GG-TT---TATT-TG--ACG---TTCTTTCTCTCTT--TTCTAT-CA-G--CTT-G--A---TGCTTTT-GATGT-TTATTGTTT------ATC------------CGAAAG-ACGGACTACC----------C-----------------------AT--------------------ATGTTCGGTTCTTTATGATGGATCTTATGTTA---TTCG--------TTCAG-GG--GTGCAGGC-CGGAAATGAT-CG---CGGGATGATG-TA----T-AATACAC-AAA---TC-GTC-GTTCCTTTGAGATcc
gi|9 : TTAG----------TCT-TG--ATTT--AAAAA--AAA-----TGAAACATTT-TTA-TTTATTTTCA--GGC--A-AA--AA--------------------AATC-CGATATA-CA-TT-T-AG-A-TC------CCCGTGT--TG--ACC-GATTGCAGAAA-A----TA-CC-CT-TTATTT-AGTTTCCTATAATTA------CT--TT--TTTGTTACACG-AG-AAGCATGGTAACCCCCCATTTTTTAAAAGTGTAAtctcgatgatcaaactcgaaaatagaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAAATACACATTTATGGTCGGTTCTTTTTGATATTCTCGATGTAAAATTGTTTTTAAAAAAACCCTCGATCAAATCAA