lowQualScore : 22 222 22222222 111 444444444 2222222222 1 1 111 66666666666666666666666666666666 111111 222222222 22222222 1 1111 3333333333 111111 22 111111 111
lowQualScore : 11 333 3 6 6 33333333 111 7 1 555555555 6 7777777777 1 8 6 2 111 4 99 55 55555555555555555555555555555555 4 8888 4 444444 4 111111111 4 4 00000000 777 4 4 5 77 5 4444 1111111111 99 66 444444 66 66 5 5 5 2 4 66 4 44 4 222222 66 4 1 4 9999 4 0 555 0 5
lowQualScore : .. ... . . . ........ ... . . ......... . .......... . . . . ... . .. .. ................................ . .... . ...... . ......... . . ........ ... . . . .. . .... .......... .. .. ...... .. .. . . . . . .. . .. . ...... .. . . . .... . . ... . .
lowQualScore : 00 333 0 7 7 55555555 777 8 7 111111111 7 1111111111 7 6 8 5 000 0 55 55 11111111111111111111111111111111 0 4444 0 999999 4 999999999 4 4 66666666 888 4 4 0 99 7 2222 0000000000 22 99 444444 99 99 0 0 0 5 4 11 6 00 4 888888 11 7 1 3 4444 4 1 000 2 0
consensus : GTGTTAGCGAGCAGAGGGCAGAGG-ATTGAAG-GGG-AAAA--A---G-AA---GACAAAAATACGACACAGGCCCCTTC----TCTCGGGGCTATTTAAC-ATTC-A----G---TAGGAAGTGTGTAAGATCTCGTC---TA-TTTTG--T--ATTG---T-GA--GC-TGT-------T---A---A-C-AT---TCAGTCTC-TGTTATTT--A--AAAAATAA-TTAAT-CAAAACA-C-AAGATG-TTTA--------CT---TACT-GACTTGAA-TAAGATCACGA--ATTATCGTT-ACA----TTTA-CATG----CCACACTTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCATTT-ATTGC--TATTATAA-ATTAAA------T--AGTTTGGTTGTAC----AATGTT-CCGTTT-C-TCTTTGTTTCG-GTAT
Reference ( gi|7 ) : GTGTTAGCGAGCAGACAGCAGAGG-GTTGAAG-GGG-AAAA--A---G-AA---GACAAAAATATGACACAGGCCTCTTC----TCTAAGGGCTATTTAAC-ATTC-A----G---TAGAAATTGTGAAAGATCTCGTC---TA-TTTTG--T--ATTG-----G----C-TGT-------T---A---A-C-AT---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAAT-CAAAAAA-C-AAGATG-TTTA--------CT---TACT-GACTTGAA-TAAGATCAAGA--ATTATCGTT-ACA----TTTA-AATG----ACACACTTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCATTT-ATTGC--TATTATCA-ATTAAA------T--AGTTTGGTTATAC----AATGTT-CCGTTT-T-TCTTTGTTTCG-GTAT
gi|13 : GTGTTAGCGAGCAGAGGGCAAAG-----------------A--A---T-AC---GATAAAAATACGAAACAGGCCCCTTC----
gi|3 : atttctctgtactagtgttttacaaaaactttgtaatttcatctgaaacaagagGCAGAGA-ATTGAAG-GGGGAAAA--A---G-AA---GACAAAAATACAACACAGGGCTATT----------------TTTAAC-AATC-AATATA---TAGGAAGTGTGTAAGATTTCGTC---TG-TTTTGTAT--ATTGGAGT-G----C-TGT-------T---A---A-CAATCAATCAGTCTC-TGTTATTT-----AAAAATAA-TTGAT-C-AAACA-C-AAGATGTTTTA--------CT---TACT-GATTTGAA-TGAGATCACGAATATTATCGTT-ACA----TTTA-CATG----CCACACTTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCATTC-ATTGC--TATTATAA-ATTAAATACATGT--AATTTGGTTGTAC----AATGTT-CCGTTT-C-TCTTTGTTTCG-GTATgatct
gi|12 : gGCAGATA-ATTGAAG-GGG-AAGAGTA---G-AA---GACAAAAATAAGGCACTGATCCCTTC----TATCGGGACTATTTAAC-TTTC-A----ATTTTAAAAAGTGTGTATGATCTCGTCCTTTC-TTTCG--TGGAGT------G----C-TGT-------T---A---A-C-AA---TC-GTCTT-TGTTAaatgtttggtttctgtaggtttcgtttcggtagatttcg
gi|5 : ggCAGAGG-ATTGAAGTGGG-AAAA--A---ATAA---GATAAAAATACGACACAGGCCCCTTC----TCACGGGACTATTTAAC-ATTCCA----G---TAGAAAGTGTGTAAGATCTCGTC---TA-ATTTG--T--ATTG-----GAGAGC-TAT-------T---A---A-C-AT---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAAT--AAAACA-C-AAGATG-TTTA--------CT---TACT-GACTCGAA-TAAGATCACGA--ATTATCATT-ACA----TTTA-CATG----CCACACTTC--CTGTATGA--CCGGAT------TA-----------------------TT-ATTGC--TATTACAA-ATTAAA------T--AGTTTGGTTGTAC----ACTGTT-CCGTTT-A-CCTTTGTTTCT-GTA
gi|6 : aCAGAGTTGTTGACG-AAA-AGAG--AACTG-AA---GGGGGAAATACGACACTGGCCCCTTC----TCTCGGGGCTATTTAAC-ATTC-A----A---TAGGAAGTGTGTAAGATCTCGTC---TA-TTTTG--T--ATTGGAGT-G----C-TTT-------T---A---A-C-AA---TCAGTCTC-TATTATAT--A--AAAAATGA-TTAAT-T-ATACA-C-AATATG-TTTA--------CT---TACT-GACATGGA-TAAGATCACGA--ATTATCGTT-ACA----T------------------TTC--CTGTATGA--CCATAT------TA--CT--GAGA-TGCT-C-GTGATTT-ATTGC--TA-TA--A-ATTGAA------C--ATTTTGCTTGTAT----AATGTT-CTGTTT-C-TCTTTGTTTTG-GTggtttcatttcgtttccatataagtttcgttttggtataagtttcgtttcgtttcg
gi|4 : atttctctttactggtgttgtacaaaaaccttgtaatttcatctatgaAGAGGTGTTAGCG-AGG-CAAA------G-AATACGACAAAAATACGAAACAGGCCCCTTCGATCTCTCGGGGCTATTTAATTATTTTA----G---TAGGAA--------GATCTCGTC---TA-TTTTG--T--ACTG-----GAGTGC-TGTGACATTGT---A---A-C-AT---TCAGTCTC-TGTTATTT--G--AAAAATAA-TCTTT-CAAACA--C-AAGATG-TTTAATTACTTACTAGTTACT-GACTTGAA-TAAGATCACGA--GTTATTGTT-ACA----TTTA-CATG----CCACACTTC--CTGTATGA--CCGTAT------GA--CT--GAGT-AGCT-C-GACATTT-ATTGCTATATTATAG-ATAAAA------T--AGTTGGGTTGTAC----AATGTT-CCATTT-C-TCTTTGTTTCG-GTAT
gi|1 : acaCTCTTC---------GGGCTATTTTAC-AGTC-A----GC--TAAGAAGTGTGTAACATCT-GTC---TA-TTTTGG-T--AATGCGATTG----C--GT-------T---A---A-C-CA---TCAGTCTCCTGTTACTT--ATAAAAAATA--TTAAT-CCAAACATC-AAGATG-TTTA--------CG---TACT-GATTCGAA-agtgtttcgtttcggtaggt
gi|10 : C-A----G---TAAGAAGTGTGTAAGATCT--TC---TA-TTTTG--T--ATTG-----G----AGTGT-------TCGTA---A-C-AA---TCAATCTC-TGTTATTA--A--AATAATAT-TTAAT-CAATAA-------------TA--------CT---TACT-GACTTGAA-TAAGATcgaacgaccgtattactctgagatgcttcgcatttattgctatcaaattaattgtttgtttgtataatgttcttttttctctttgtcttggtaccgtggtctcgttcgttaggttcattcgttcggtatacgctttcgttttcgtttcggtgggtttcgtttcgtttcggctggatgtcggttcttcgtttcgtgtatcattcgtcttcggtcaggctttcgttttcgtattcggttatttcgtttgggtggtaattcccgtttcgtttcgcggtgggatttcgtttgtttcgcatttacaggtacccacaacacttgaacaaaactgctacgaccttgaacaaatgtaaataattacttgaagtgattggataattc
gi|8 : GTGTAAGATCTAGTC---TA-TTTTG--T--ATTG-----GAGTGC-TGT-------T---A-----C-AT---TCAGCC-C-TGTTATTTCAA--AAAAATAA-TTAAT-CAAA----CGAAGATG-TTTA--------CT---TATT-GACTTAAA-TAAGATCACGA--ATGGTCGTTTATA----TTTA-CATG----CCACACTTC--CTGTATG---CC-TAT------AA--CT--GAGA-TGCT-C-GCCATTTTATTGC--TATTATAA-ATTAAA------T--AGTTTTGTTGCAC-----ATGTT-TC--TT-C-TCTTTTTTTCG-GTATgaccgtatataatttactgagatactcgccataaaatattttgcttgtataatgttccg
gi|11 : aAAG-TCTCGCT---TAATTTTG--C--ATTG-----GAAGGCGTGG-------T---------C-AT---TCAGTTTC-TGTTGTTC--A--GAA--TAA-TAAATTCAAACAA-C-AAGATG-TAAAA-------CT---TAC------TGAG-TGAG-TCACGA--ATTAATGTT-A
gi|2 : AGATCTCGTCC--TA-TTT-G--T--ATTGAAGTGG----C-CTT-------T---ATAGATC-AT---ACAGTCTC-TGTTAGTC--T--AAAAATAATTTAAT-C-AGACT-C-AAGATG-TTTT--------AT---TACTAAACTTGAATTAAGATCACGA--ATTGTC-TT-ACAAAATTTTATCATGTAAAACATCTTTCGGCTGTATGAAGACGTAT------CATCTT--GAGGTTGCT-CAGCCATTT-ATTG---TA-TGTGAGAATGGA------T--A--TTGCTTGAACCAAAGATGTTCCCGTTT-A-TCTTCTTTCCATGTATttcttattaacatttcaaagtatgatcaag
gi|10 : ATGA--CCGTATATAATTTA--CT--GAGA-TACT-C-GCCA--T-A------------------AAA------T--ATTTTGCTTGTAT----AATGTT-CCGacagggtttcgggttggcaagtaggttttcattcgtttcggtataagcgtatcgtttcgtttcggtgggtttgttttcgtttcgtagatttcgatttcggtaaataggtttcgttccgttcgatgtgtttgtttggtttcggtatatttgtttcagtgacttatttcgtttctatgttcgtttcgcactttacaggtaccaac
gi|1 : cagtaagaagtgtgtaagatcttctattttgtattggagtgttcgtaacaatcaatctctgttattaaaataatatttaatcaataatacttactgacttgaataagACGA--CCGTAT------TA--CTCTGAGA-TGCTTC-GC-ATTT-ATTGC--TATCA--A-ATT-AA------T--TGTTTGTTTGTAT----AATGTT-CTTTTT-TCTCTTTGTCTTG-GTA
gi|15 : ctcttcgggctattttacagtcagctaagaagtgtgtaacatctgtctattttggtaatgcgattgcgttaaccatcagtctcctgttacttataaaaaatattaatccaaacatcaagatgtttacgtactgattcgaacgaATTT-ATTGC--TATTAT-A-ATTAAA------TGTAATTTGGTTACAC----AATGTT-CTGTTTCT-TTTCTATTT-G-GTATccgtggtctcgttcgttaggttcattcgttcggtatacgctttcgttttcgtttcggtgggtttcgtttcgtttcggctggatgtcggttcttcgtttcgtgtatcattcgtcttcggtcaggctttcgttttcgtattcggttatttcgtttgggtggtaattcccgtttcgtttcgcggtgggatttcgtttgtttcgcatttacaggtacccacaacacttgaacaaaactgctacgaccttgaacaaatgtaaataattacttgaagtgattggataattc
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TGTATAATTATGTATTACATACGCTCAGTTTCCATTATTATCATAATCCAATACTAGTAGTCCACTATTACAGTCTATTTCGTTTCGCTCTGTTTCTATTCAGTTTGATTTTGTTTCGGTAGGTTCCTTTTGGTAGATTTCGTTTCGTTCGCACTTTACAGGTACCCTATAAACACATTGCATTTGGTAAATGCAATTTACCATCAAACTGAAATTCGATCATTTAC
Unaligned ( gi|14 ): AGAGTTTCATTTAGGTAGATTTCGTTTTGCACTTTAGAGGTACCCATAAATATCCATAGGCCATATCGAAATGGGGCAGCAAACAAATATCATCTGTTACA
Unaligned ( gi|16 ): TCGAGCTTATAAATATATATTAATTCAATGTTAAATGTCCATAGATAATT
Alignments
lowQualScore : 1111111111 1111 1 111 1111 4444444444444 1111111 11111 11111111 1111 1111 1111 111111 111111
lowQualScore : 0 6 6 6666666666 0000 77 5 0 333 0000 1 3 3 3 55 7777777777777 1111111 666 77777 00000 3 66666 4 5 8 8 4 88888888 777 4 4 66 5 0000 0000 5 0 0000 66 55 222222 66 66 4 4 4 1 4 55 0 111111 55 3 8888 4 4 4 4
lowQualScore : . . . .......... .... .. . . ... .... . . . . .. ............. ....... ... ..... ..... . ..... . . . . . ........ ... . . .. . .... .... . . .... .. .. ...... .. .. . . . . . .. . ...... .. . .... . . . .
lowQualScore : 7 7 7 7777777777 6666 99 7 0 888 6666 4 6 6 6 00 5555555555555 8888888 444 88888 55555 6 11111 0 6 1 0 0 55555555 000 0 0 99 0 6666 6666 0 2 6666 99 55 888888 11 11 4 4 4 1 0 55 7 555555 55 2 5555 0 0 4 4
consensus : GTGTTAGCGAGCAGAGGGCAGAGAATTGAAG-GGG-AAAA--AG-AA---GACAAAAATACGACACAGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AG---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-----GA---G--CTGT-------T---A---A-CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAATCAAAACA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCACGAAT--TATCGTT-A----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCATTT-ATTGC--TATTATAAATTAAA------T--AGTTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTAT
Reference ( family-1311 ) : GTGTTAGCGAGCAGAGGGCAGAGGATTGAAG-GGG-AAAA--AG-AA---GACAAAAATACGACACAGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AG---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG---T-GA---G--CTGT-------T---A---A-CA-T---TCAGTCTC-TGTTATTT--A--AAAAATAA-TTAATCAAAACA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCACGAAT--TATCGTT-A----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCATTT-ATTGC--TATTATAAATTAAA------T--AGTTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTAT
gi|1 : C----TCTTCGGGCTATTT--TAC-AGTC-AGC--TA----AGAAGTGTGTAACATCT-GTC-TA-TTTTGGTAA--TG---C-GATT-G--C-GT-------T---A---A-CC-A---TCAGTCTCCTGTTACTT--ATAAAAAATA--TTAATCCAAACATCAAGATGTTT-A--------CG---TACT-GATTCGAA-
gi|1 : ACGA--CCGTAT------TA--CTCTGAGA-TGCTTC-GC-ATTT-ATTGC--TAT--CAAATT-AA------T--TGTTTGTTTGTAT----AATGTT-CTTTTTTCTCTT-TGTCTTG-GTAcgaacgaccgtattactctgagatgcttcgcatttattgctatcaaattaattgtttgtttgtataatgttcttttttctctttgtcttggtaccgtggtctcgttcgttaggttcattcgttcggtatacgctttcgttttcgtttcggtgggtttcgtttcgtttcggctggatgtcggttcttcgtttcgtgtatcattcgtcttcggtcaggctttcgttttcgtattcggttatttcgtttgggtggtaattcccgtttcgtttcgcggtgggatttcgtttgtttcgcatttacaggtacccacaacacttgaacaaaactgctacgaccttgaacaaatgtaaataattacttgaagtgattggataattc
gi|10 : ctcttcgggctattttacagtcagctaagaagtgtgtaacatctgtctattttggtaatgcgattgcgttaaccatcagtctcctgttacttataaaaaatattaatccaaacatcaagatgtttacgtactgattcgaacgaC-AG---TA----AGAAGTGTGTAAGATCT--TC-TA-TTTTG-TAT--TG-----GA---G---TGT-------TCGTA---A-CA-A---TCAATCTC-TGTTATTA--A--AATAATAT-TTAATCA----A-TAA------T-A--------CT---TACT-GACTTGAA-TAAGATGACccgtggtctcgttcgttaggttcattcgttcggtatacgctttcgttttcgtttcggtgggtttcgtttcgtttcggctggatgtcggttcttcgtttcgtgtatcattcgtcttcggtcaggctttcgttttcgtattcggttatttcgtttgggtggtaattcccgtttcgtttcgcggtgggatttcgtttgtttcgcatttacaggtacccacaacacttgaacaaaactgctacgaccttgaacaaatgtaaataattacttgaagtgattggataattc
gi|10 : ATGA--CCGTATATAATTTA--CT--GAGA-TACT-C-GCCA--T-A-----------------AAA------T--ATTTTGCTTGTAT----AATGTT-C-CGcgtatataatttactgagatactcgccataaaatattttgcttgtataatgttccg
gi|11 : cagtaagaagtgtgtaagatcttctattttgtattggagtgttcgtaacaatcaatctctgttattaaaataatatttaatcaataatacttactgacttgaataagAAG-TCTCGCT-TAATTTTG-CAT--TG---G-AA---G--GCGT-------G---G---T-CA-T---TCAGTTTC-TGTTGTTC--A--GAA--TAA-TAAATTCAAACAACAAGATGTAA-AA-------CT---TAC------TGAG-TGAG-TCACGAAT--TAATGTT-ATTCTTA----TTAA-CATTTCAAA------------GTATGA--TC
gi|12 : GGGCAGATAATTGAAG-GGG-AAGAGTAG-AA---GACAAAAATAAGGCACTGATCCCTTC----TATCGGGACTATTT--AAC-TTTC-AATTTTA----AAAAGTGTGTATGATCTCGTC----CTTTC-TTT--CG---T-GGAGTG--CTGT-------T---A---A-CA-A---TC-GTCTT-TGTTAaag
gi|13 : GTGTTAGCGAGCAGAGGGCAAAGAAT-------------------AC---GATAAAAATACGAAACAGGCCCCTTC----
gi|15 : atttctctgtactagtgttttacaaaaactttgtaatttcatctgaaacaagagATTT-ATTGC--TATTATAA-TTAAA------TGTAATTTGGTTACAC----AATGTT-C-TGTTTCTTTTCTATTT-G-GTATgatct
gi|2 : tataAGATCTCGTCCTA-TTT-G-TAT--TGAAGT-G----G--CCTT-------T---ATAGATCA-T---ACAGTCTC-TGTTAGTC--T--AAAAATAATTTAATC-AGACT-CAAGATGTTT-T--------AT---TACTAAACTTGAATTAAGATCACGAAT--TGTC-TT-A----CAAAATTTTATCATGTAAAACATCTTTCGGCTGTATGAAGACGTAT------CATCTT--GAGGTTGCT-CAGCCATTT-ATTG---TATGTGAGAATGGA------T--A--TTGCTTGAACCAAAGATGTTCC-CGTTTATCTT-CTTTCCATGTATagagtttcatttcgtttcagtagg
gi|3 : GGCAGAGAATTGAAG-GGGGAAAA--AG-AA---GACAAAAATACAACACAGG------------------GCTATTTTTAAC-AATC-AA---TATATAGGAAGTGTGTAAGATTTCGTC-TG-TTTTG-TATATTG-----GA---GTGCTGT-------T---A---A-CAATCAATCAGTCTC-TGTTATTT--A--AAAA-TAA-TTGATCAAA-CA-CAAGATGTTTTA--------CT---TACT-GATTTGAA-TGAGATCACGAATATTATCGTT-A----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCATTC-ATTGC--TATTATAAATTAAATACATGT--AATTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTATacagggtttcgggttggcaagtaggttttcattcgtttcggtataagcgtatcgtttcgtttcggtgggtttgttttcgtttcgtagatttcgatttcggtaaataggtttcgttccgttcgatgtgtttgtttggtttcggtatatttgtttcagtgacttatttcgtttctatgttcgtttcgcactttacaggtaccaac
gi|4 : AA--AG-AATACGACAAAAATACGAAACAGGCCCCTTCGATCTCTCGGGGCTATTT--AATTATTTTAG---TA----GGAAG--------ATCTCGTC-TA-TTTTG-TAC--TG-----GA---GTGCTGTGACATTGT---A---A-CA-T---TCAGTCTC-TGTTATTT--G--AAAAATAA-TCTTTCAAA-CA-CAAGATGTTT-AATTACTTACTAGTTACT-GACTTGAA-TAAGATCACGAGT--TATTGTT-A----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------GA--CT--GAGT-AGCT-C-GACATTT-ATTGCTATATTATAGATAAAA------T--AGTTGGGTTGTAC----AATGTT-C-CATTTCTCTT-TGTTTCG-GTATaatgtttggtttctgtaggtttcgtttcggtagatttcg
gi|5 : acaagaggtgttagcgaggcCAGAGGATTGAAGTGGG-AAAA--AATAA---GATAAAAATACGACACAGGCCCCTTC----TCACGGGACTATTT--AAC-ATTCCAG---TA----GAAAGTGTGTAAGATCTCGTC-TA-ATTTG-TAT--TG---GAGA---G--CTAT-------T---A---A-CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAAT-AAAACA-CAAGATGTTT-A--------CT---TACT-GACTCGAA-TAAGATCACGAAT--TATCATT-A----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGGAT------TA-----------------------TT-ATTGC--TATTACAAATTAAA------T--AGTTTGGTTGTAC----ACTGTT-C-CGTTTACCTT-TGTTTCT-GTAagtgtttcgtttcggtaggt
gi|6 : aAGAGAACTGAAG-GGG-GAAA------------------TACGACACTGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AA---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-----GAGT-G--CTTT-------T---A---A-CA-A---TCAGTCTC-TATTATAT--A--AAAAATGA-TTAATT-ATACA-CAATATGTTT-A--------CT---TACT-GACATGGA-TAAGATCACGAAT--TATCGTT-A----CA----T------------------TTC--CTGTATGA--CCATAT------TA--CT--GAGA-TGCT-C-GTGATTT-ATTGC-----TATAAATTGAA------C--ATTTTGCTTGTAT----AATGTT-C-TGTTTCTCTT-TGTTTTG-GTggtttcatttcgtttccatataagtttcgttttggtataagtttcgtttcgtttcg
gi|7 : atttctctttactggtgttgtacaaaaaccttgtaatttcatctatgacagagttgttgacgaaaGTGTTAGCGAGCAGACAGCAGAGGGTTGAAG-GGG-AAAA--AG-AA---GACAAAAATATGACACAGGCCTCTTC----TCTAAGGGCTATTT--AAC-ATTC-AG---TA----GAAATTGTGAAAGATCTCGTC-TA-TTTTG-TAT--TG----------G--CTGT-------T---A---A-CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAATCAAAAAA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCAAGAAT--TATCGTT-A----CA----TTTA-AATGACACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCATTT-ATTGC--TATTATCAATTAAA------T--AGTTTGGTTATAC----AATGTT-C-CGTTTTTCTT-TGTTTCG-GTAT
gi|8 : GTGTAAGATCTAGTC-TA-TTTTG-TAT--TG-----GA---GTGCTGT-------T---A-----CA-T---TCAGCC-C-TGTTATTTCAA--AAAAATAA-TTAATCAAA-CG--AAGATGTTT-A--------CT---TATT-GACTTAAA-TAAGATCACGAAT--GGTCGTTTA----TA----TTTA-CATGCCACAC----TTC--CTGTATG---CC-TAT------AA--CT--GAGA-TGCT-C-GCCATTTTATTGC--TATTATAAATTAAA------T--AGTTTTGTTGCAC-----ATGTT-T-C--TTCTCTT-TTTTTCG-GTAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGTATAATTATGTATTACATACGCTCAGTTTCCATTATTATCATAATCCAATACTAGTAGTCCACTATTACAGTCTATTTCGTTTCGCTCTGTTTCTATTCAGTTTGATTTTGTTTCGGTAGGTTCCTTTTGGTAGATTTCGTTTCGTTCGCACTTTACAGGTACCCTATAAACACATTGCATTTGGTAAATGCAATTTACCATCAAACTGAAATTCGATCATTTAC
Unaligned ( gi|14 ): AGAGTTTCATTTAGGTAGATTTCGTTTTGCACTTTAGAGGTACCCATAAATATCCATAGGCCATATCGAAATGGGGCAGCAAACAAATATCATCTGTTACA
Unaligned ( gi|16 ): TCGAGCTTATAAATATATATTAATTCAATGTTAAATGTCCATAGATAATT
Alignments
lowQualScore : 2222222222 1111 1 111 1111 44444444444444444444 11111 1 11111111 1111 1111 1111 111111 111111
lowQualScore : 6 2 5 5 2222222222 1 0000 77 5 0 333 0000 1 3 3 3 55 3 11111111111111111111 666 3 00000 3 666666 4 0 3 8 4 88888888 777 4 4 66 5 0000 0000 5 0 0000 66 55 222222 66 66 4 4 4 1 4 55 0 111111 55 3 8888 4 4 4 4
lowQualScore : . . . . .......... . .... .. . . ... .... . . . . .. . .................... ... . ..... . ...... . . . . . ........ ... . . .. . .... .... . . .... .. .. ...... .. .. . . . . . .. . ...... .. . .... . . . .
lowQualScore : 7 5 0 7 9999999999 3 6666 99 7 0 888 6666 4 6 6 6 00 6 00000000000000000000 444 6 55555 6 666666 0 5 2 0 0 55555555 000 0 0 99 0 6666 6666 0 2 6666 99 55 888888 11 11 4 4 4 1 0 55 7 555555 55 2 5555 0 0 4 4
consensus : GTGTTAGCGAGCAGAGGGCAGAGAATTGAAG-GGG-AAAA--AG-AAGACAAAAATACGACACAGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AG---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-GA--G--C-TG---T-------TA---A-CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAATCAAAACA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCACGAAT--TATCG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTTATTGC--TATTATAAATTAAA------T--AGTTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTAT
Reference ( family-1311 ) : GTGTTAGCGAGCAGAGGGCAGAGAATTGAAG-GGG-AAAA--AG-AAGACAAAAATACGACACAGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AG---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-GA--G--C-TG---T-------TA---A-CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAATCAAAACA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCACGAAT--TATCG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTTATTGC--TATTATAAATTAAA------T--AGTTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTAT
gi|1 : C----TCTTCGGGCTATTT--TAC-AGTC-AGC--TA----AGAAGTGTGTAACATCT-GTC-TA-TTTTGGTAA--TGCGATTG--C--G---T-------TA---A-CC-A---TCAGTCTCCTGTTACTT--ATAAAAAATA--TTAATCCAAACATCAAGATGTTT-A--------CG---TACT-GATTCGAA-
gi|1 : ACGA--CCGTAT------TA--CTCTGAGA-TGCTTC-GC-A-TTTATTGC--TAT--CAAATT-AA------T--TGTTTGTTTGTAT----AATGTT-CTTTTTTCTCTT-TGTCTTG-GTAcgaacgaccgtattactctgagatgcttcgcatttattgctatcaaattaattgtttgtttgtataatgttcttttttctctttgtcttggtaccgtggtctcgttcgttaggttcattcgttcggtatacgctttcgttttcgtttcggtgggtttcgtttcgtttcggctggatgtcggttcttcgtttcgtgtatcattcgtcttcggtcaggctttcgttttcgtattcggttatttcgtttgggtggtaattcccgtttcgtttcgcggtgggatttcgtttgtttcgcatttacaggtacccacaacacttgaacaaaactgctacgaccttgaacaaatgtaaataattacttgaagtgattggataattc
gi|10 : ctcttcgggctattttacagtcagctaagaagtgtgtaacatctgtctattttggtaatgcgattgcgttaaccatcagtctcctgttacttataaaaaatattaatccaaacatcaagatgtttacgtactgattcgaacgaC-AG---TA----AGAAGTGTGTAAGATCT--TC-TA-TTTTG-TAT--TG-GA--G----TG---TTCG----TA---A-CA-A---TCAATCTC-TGTTATTA--A--AATAATAT-TTAATCA----A-TAA------T-A--------CT---TACT-GACTTGAA-TAAGATGACccgtggtctcgttcgttaggttcattcgttcggtatacgctttcgttttcgtttcggtgggtttcgtttcgtttcggctggatgtcggttcttcgtttcgtgtatcattcgtcttcggtcaggctttcgttttcgtattcggttatttcgtttgggtggtaattcccgtttcgtttcgcggtgggatttcgtttgtttcgcatttacaggtacccacaacacttgaacaaaactgctacgaccttgaacaaatgtaaataattacttgaagtgattggataattc
gi|10 : ATGA--CCGTATATAATTTA--CT--GAGA-TACT-C-GCCA---TA-----------------AAA------T--ATTTTGCTTGTAT----AATGTT-C-CGcgtatataatttactgagatactcgccataaaatattttgcttgtataatgttccg
gi|11 : cagtaagaagtgtgtaagatcttctattttgtattggagtgttcgtaacaatcaatctctgttattaaaataatatttaatcaataatacttactgacttgaataagAAG-TCTCGCT-TAATTTTG-CAT--TG-GAAGG--CGTG---G-------T------CA-T---TCAGTTTC-TGTTGTTC--A--GAA--TAA-TAAATTCAAACAACAAGATGTAA-AA-------CT---TAC------TGAG-TGAG-TCACGAAT--TAATG-TTATTCTTA----TTAA-CATTTCAAA------------GTATGA--TC
gi|12 : GGGCAGATAATTGAAG-GGG-AAGAGTAG-AAGACAAAAATAAGGCACTGATCCCTTC----TATCGGGACTATTT--AAC-TTTC-AATTTTA----AAAAGTGTGTATGATCTCGTC-CT-TTCTT-TCG--TG-GAGTG--C-TG---T-------TA---A-CA-A---TC-GTCTT-TGTTAaag
gi|13 : GTGTTAGCGAGCAGAGGGCAAAGAAT-------------------ACGATAAAAATACGAAACAGGCCCCTTC----
gi|15 : atttctctgtactagtgttttacaaaaactttgtaatttcatctgaaacaagagA-TTTATTGC--TATTATAA-TTAAA------TGTAATTTGGTTACAC----AATGTT-C-TGTTTCTTTTCTATTT-G-GTATgatct
gi|2 : tataAGATCTCGTCCTA-TTT-G-TAT--TG-AA--G--T-GGCCTT-------TATAGATCA-T---ACAGTCTC-TGTTAGTC--T--AAAAATAATTTAATC-AGACT-CAAGATGTTT-T--------AT---TACTAAACTTGAATTAAGATCACGAAT--TGTC--TTA----CAAAATTTTATCATGTAAAACATCTTTCGGCTGTATGAAGACGTAT------CATCTT--GAGGTTGCT-CAGCCA-TTTATTG---TATGTGAGAATGGA------T--A--TTGCTTGAACCAAAGATGTTCC-CGTTTATCTT-CTTTCCATGTATagagtttcatttcgtttcagtagg
gi|3 : GGCAGAGAATTGAAG-GGGGAAAA--AG-AAGACAAAAATACAACACAGG------------------GCTATTTTTAAC-AATC-AA---TATATAGGAAGTGTGTAAGATTTCGTC-TG-TTTTG-TATATTG-GA--GTGC-TG---T-------TA---A-CAATCAATCAGTCTC-TGTTATTT--A--AAAA-TAA-TTGATCAAA-CA-CAAGATGTTTTA--------CT---TACT-GATTTGAA-TGAGATCACGAATATTATCG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTCATTGC--TATTATAAATTAAATACATGT--AATTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTATacagggtttcgggttggcaagtaggttttcattcgtttcggtataagcgtatcgtttcgtttcggtgggtttgttttcgtttcgtagatttcgatttcggtaaataggtttcgttccgttcgatgtgtttgtttggtttcggtatatttgtttcagtgacttatttcgtttctatgttcgtttcgcactttacaggtaccaac
gi|4 : GTGTTAGCGAG------GCAAAGAAT-------------------ACGACAAAAATACGAAACAGGCCCCTTCGATCTCTCGGGGCTATTT--AATTATTTTAG---TA----GGAAG--------ATCTCGTC-TA-TTTTG-TAC--TG-GA--GTGC-TG---TGACATTGTA---A-CA-T---TCAGTCTC-TGTTATTT--G--AAAAATAA-TCTTTCAAA-CA-CAAGATGTTT-AATTACTTACTAGTTACT-GACTTGAA-TAAGATCACGAGT--TATTG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------GA--CT--GAGT-AGCT-C-GACA-TTTATTGCTATATTATAGATAAAA------T--AGTTGGGTTGTAC----AATGTT-C-CATTTCTCTT-TGTTTCG-GTATaatgtttggtttctgtaggtttcgtttcggtagatttcg
gi|5 : acaagagCAGAGGATTGAAGTGGG-AAAA--AATAAGATAAAAATACGACACAGGCCCCTTC----TCACGGGACTATTT--AAC-ATTCCAG---TA----GAAAGTGTGTAAGATCTCGTC-TA-ATTTG-TAT--TG-GA--GAGC-TA---T-------TA---A-CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAAT-AAAACA-CAAGATGTTT-A--------CT---TACT-GACTCGAA-TAAGATCACGAAT--TATCA-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGGAT------TA------------------------TTATTGC--TATTACAAATTAAA------T--AGTTTGGTTGTAC----ACTGTT-C-CGTTTACCTT-TGTTTCT-GTAagtgtttcgtttcggtaggt
gi|6 : aAGAGAACTGAAG-GGG-GAAA---------------TACGACACTGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AA---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-GAGTG--C-TT---T-------TA---A-CA-A---TCAGTCTC-TATTATAT--A--AAAAATGA-TTAATT-ATACA-CAATATGTTT-A--------CT---TACT-GACATGGA-TAAGATCACGAAT--TATCG-TTA----CA----T------------------TTC--CTGTATGA--CCATAT------TA--CT--GAGA-TGCT-C-GTGA-TTTATTGC-----TATAAATTGAA------C--ATTTTGCTTGTAT----AATGTT-C-TGTTTCTCTT-TGTTTTG-GTggtttcatttcgtttccatataagtttcgttttggtataagtttcgtttcgtttcg
gi|7 : atttctctttactggtgttgtacaaaaaccttgtaatttcatctatgacagagttgttgacgaaaGTGTTAGCGAGCAGACAGCAGAGGGTTGAAG-GGG-AAAA--AG-AAGACAAAAATATGACACAGGCCTCTTC----TCTAAGGGCTATTT--AAC-ATTC-AG---TA----GAAATTGTGAAAGATCTCGTC-TA-TTTTG-TAT--TG-G------C-TG---T-------TA---A-CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAATCAAAAAA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCAAGAAT--TATCG-TTA----CA----TTTA-AATGACACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTTATTGC--TATTATCAATTAAA------T--AGTTTGGTTATAC----AATGTT-C-CGTTTTTCTT-TGTTTCG-GTAT
gi|8 : GTGTAAGATCTAGTC-TA-TTTTG-TAT--TG-GAGTG--C-TG---T-------T----A-CA-T---TCAG-CCC-TGTTATTTCAA--AAAAATAA-TTAATC-AAACG--AAGATGTTT-A--------CT---TATT-GACTTAAA-TAAGATCACGAAT--GGTCGTTTA----TA----TTTA-CATGCCACAC----TTC--CTGTATG---CC-TAT------AA--CT--GAGA-TGCT-C-GCCATTTTATTGC--TATTATAAATTAAA------T--AGTTTTGTTGCAC-----ATGTT-T-C--TTCTCTT-TTTTTCG-GTAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGTATAATTATGTATTACATACGCTCAGTTTCCATTATTATCATAATCCAATACTAGTAGTCCACTATTACAGTCTATTTCGTTTCGCTCTGTTTCTATTCAGTTTGATTTTGTTTCGGTAGGTTCCTTTTGGTAGATTTCGTTTCGTTCGCACTTTACAGGTACCCTATAAACACATTGCATTTGGTAAATGCAATTTACCATCAAACTGAAATTCGATCATTTAC
Unaligned ( gi|14 ): AGAGTTTCATTTAGGTAGATTTCGTTTTGCACTTTAGAGGTACCCATAAATATCCATAGGCCATATCGAAATGGGGCAGCAAACAAATATCATCTGTTACA
Unaligned ( gi|16 ): TCGAGCTTATAAATATATATTAATTCAATGTTAAATGTCCATAGATAATT
Alignments
lowQualScore : 2222222222 1111 1 111 1111 44444444444444444444 11111 1 11111111 1111 1111 1111 111111 111111
lowQualScore : 6 2 5 5 2222222222 1 0000 77 5 0 333 0000 1 3 3 3 55 3 11111111111111111111 666 3 00000 3 666666 4 0 3 8 4 88888888 777 4 4 66 5 0000 0000 5 0 0000 66 55 222222 66 66 4 4 4 1 4 55 0 111111 55 3 8888 4 4 4 4
lowQualScore : . . . . .......... . .... .. . . ... .... . . . . .. . .................... ... . ..... . ...... . . . . . ........ ... . . .. . .... .... . . .... .. .. ...... .. .. . . . . . .. . ...... .. . .... . . . .
lowQualScore : 7 5 0 7 9999999999 3 6666 99 7 0 888 6666 4 6 6 6 00 6 00000000000000000000 444 6 55555 6 666666 0 5 2 0 0 55555555 000 0 0 99 0 6666 6666 0 2 6666 99 55 888888 11 11 4 4 4 1 0 55 7 555555 55 2 5555 0 0 4 4
consensus : GTGTTAGCGAGCAGAGGGCAGAGAATTGAAG-GGG-AAAA--AG-AAGACAAAAATACGACACAGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AG---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-GA--G--C-TG---T-------TA---A-CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAATCAAAACA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCACGAAT--TATCG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTTATTGC--TATTATAAATTAAA------T--AGTTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTAT
Reference ( family-1311 ) : GTGTTAGCGAGCAGAGGGCAGAGAATTGAAG-GGG-AAAA--AG-AAGACAAAAATACGACACAGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AG---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-GA--G--C-TG---T-------TA---A-CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAATCAAAACA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCACGAAT--TATCG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTTATTGC--TATTATAAATTAAA------T--AGTTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTAT
gi|1 : C----TCTTCGGGCTATTT--TAC-AGTC-AGC--TA----AGAAGTGTGTAACATCT-GTC-TA-TTTTGGTAA--TGCGATTG--C--G---T-------TA---A-CC-A---TCAGTCTCCTGTTACTT--ATAAAAAATA--TTAATCCAAACATCAAGATGTTT-A--------CG---TACT-GATTCGAA-
gi|1 : ACGA--CCGTAT------TA--CTCTGAGA-TGCTTC-GC-A-TTTATTGC--TAT--CAAATT-AA------T--TGTTTGTTTGTAT----AATGTT-CTTTTTTCTCTT-TGTCTTG-GTAcgaacgaccgtattactctgagatgcttcgcatttattgctatcaaattaattgtttgtttgtataatgttcttttttctctttgtcttggtaccgtggtctcgttcgttaggttcattcgttcggtatacgctttcgttttcgtttcggtgggtttcgtttcgtttcggctggatgtcggttcttcgtttcgtgtatcattcgtcttcggtcaggctttcgttttcgtattcggttatttcgtttgggtggtaattcccgtttcgtttcgcggtgggatttcgtttgtttcgcatttacaggtacccacaacacttgaacaaaactgctacgaccttgaacaaatgtaaataattacttgaagtgattggataattc
gi|10 : ctcttcgggctattttacagtcagctaagaagtgtgtaacatctgtctattttggtaatgcgattgcgttaaccatcagtctcctgttacttataaaaaatattaatccaaacatcaagatgtttacgtactgattcgaacgaC-AG---TA----AGAAGTGTGTAAGATCT--TC-TA-TTTTG-TAT--TG-GA--G----TG---TTCG----TA---A-CA-A---TCAATCTC-TGTTATTA--A--AATAATAT-TTAATCA----A-TAA------T-A--------CT---TACT-GACTTGAA-TAAGATGACccgtggtctcgttcgttaggttcattcgttcggtatacgctttcgttttcgtttcggtgggtttcgtttcgtttcggctggatgtcggttcttcgtttcgtgtatcattcgtcttcggtcaggctttcgttttcgtattcggttatttcgtttgggtggtaattcccgtttcgtttcgcggtgggatttcgtttgtttcgcatttacaggtacccacaacacttgaacaaaactgctacgaccttgaacaaatgtaaataattacttgaagtgattggataattc
gi|10 : ATGA--CCGTATATAATTTA--CT--GAGA-TACT-C-GCCA---TA-----------------AAA------T--ATTTTGCTTGTAT----AATGTT-C-CGcgtatataatttactgagatactcgccataaaatattttgcttgtataatgttccg
gi|11 : cagtaagaagtgtgtaagatcttctattttgtattggagtgttcgtaacaatcaatctctgttattaaaataatatttaatcaataatacttactgacttgaataagAAG-TCTCGCT-TAATTTTG-CAT--TG-GAAGG--CGTG---G-------T------CA-T---TCAGTTTC-TGTTGTTC--A--GAA--TAA-TAAATTCAAACAACAAGATGTAA-AA-------CT---TAC------TGAG-TGAG-TCACGAAT--TAATG-TTATTCTTA----TTAA-CATTTCAAA------------GTATGA--TC
gi|12 : GGGCAGATAATTGAAG-GGG-AAGAGTAG-AAGACAAAAATAAGGCACTGATCCCTTC----TATCGGGACTATTT--AAC-TTTC-AATTTTA----AAAAGTGTGTATGATCTCGTC-CT-TTCTT-TCG--TG-GAGTG--C-TG---T-------TA---A-CA-A---TC-GTCTT-TGTTAaag
gi|13 : GTGTTAGCGAGCAGAGGGCAAAGAAT-------------------ACGATAAAAATACGAAACAGGCCCCTTC----
gi|15 : atttctctgtactagtgttttacaaaaactttgtaatttcatctgaaacaagagA-TTTATTGC--TATTATAA-TTAAA------TGTAATTTGGTTACAC----AATGTT-C-TGTTTCTTTTCTATTT-G-GTATgatct
gi|2 : tataAGATCTCGTCCTA-TTT-G-TAT--TG-AA--G--T-GGCCTT-------TATAGATCA-T---ACAGTCTC-TGTTAGTC--T--AAAAATAATTTAATC-AGACT-CAAGATGTTT-T--------AT---TACTAAACTTGAATTAAGATCACGAAT--TGTC--TTA----CAAAATTTTATCATGTAAAACATCTTTCGGCTGTATGAAGACGTAT------CATCTT--GAGGTTGCT-CAGCCA-TTTATTG---TATGTGAGAATGGA------T--A--TTGCTTGAACCAAAGATGTTCC-CGTTTATCTT-CTTTCCATGTATagagtttcatttcgtttcagtagg
gi|3 : GGCAGAGAATTGAAG-GGGGAAAA--AG-AAGACAAAAATACAACACAGG------------------GCTATTTTTAAC-AATC-AA---TATATAGGAAGTGTGTAAGATTTCGTC-TG-TTTTG-TATATTG-GA--GTGC-TG---T-------TA---A-CAATCAATCAGTCTC-TGTTATTT--A--AAAA-TAA-TTGATCAAA-CA-CAAGATGTTTTA--------CT---TACT-GATTTGAA-TGAGATCACGAATATTATCG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTCATTGC--TATTATAAATTAAATACATGT--AATTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTATacagggtttcgggttggcaagtaggttttcattcgtttcggtataagcgtatcgtttcgtttcggtgggtttgttttcgtttcgtagatttcgatttcggtaaataggtttcgttccgttcgatgtgtttgtttggtttcggtatatttgtttcagtgacttatttcgtttctatgttcgtttcgcactttacaggtaccaac
gi|4 : GTGTTAGCGAG------GCAAAGAAT-------------------ACGACAAAAATACGAAACAGGCCCCTTCGATCTCTCGGGGCTATTT--AATTATTTTAG---TA----GGAAG--------ATCTCGTC-TA-TTTTG-TAC--TG-GA--GTGC-TG---TGACATTGTA---A-CA-T---TCAGTCTC-TGTTATTT--G--AAAAATAA-TCTTTCAAA-CA-CAAGATGTTT-AATTACTTACTAGTTACT-GACTTGAA-TAAGATCACGAGT--TATTG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------GA--CT--GAGT-AGCT-C-GACA-TTTATTGCTATATTATAGATAAAA------T--AGTTGGGTTGTAC----AATGTT-C-CATTTCTCTT-TGTTTCG-GTATaatgtttggtttctgtaggtttcgtttcggtagatttcg
gi|5 : acaagagCAGAGGATTGAAGTGGG-AAAA--AATAAGATAAAAATACGACACAGGCCCCTTC----TCACGGGACTATTT--AAC-ATTCCAG---TA----GAAAGTGTGTAAGATCTCGTC-TA-ATTTG-TAT--TG-GA--GAGC-TA---T-------TA---A-CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAAT-AAAACA-CAAGATGTTT-A--------CT---TACT-GACTCGAA-TAAGATCACGAAT--TATCA-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGGAT------TA------------------------TTATTGC--TATTACAAATTAAA------T--AGTTTGGTTGTAC----ACTGTT-C-CGTTTACCTT-TGTTTCT-GTAagtgtttcgtttcggtaggt
gi|6 : aAGAGAACTGAAG-GGG-GAAA---------------TACGACACTGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AA---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-GAGTG--C-TT---T-------TA---A-CA-A---TCAGTCTC-TATTATAT--A--AAAAATGA-TTAATT-ATACA-CAATATGTTT-A--------CT---TACT-GACATGGA-TAAGATCACGAAT--TATCG-TTA----CA----T------------------TTC--CTGTATGA--CCATAT------TA--CT--GAGA-TGCT-C-GTGA-TTTATTGC-----TATAAATTGAA------C--ATTTTGCTTGTAT----AATGTT-C-TGTTTCTCTT-TGTTTTG-GTggtttcatttcgtttccatataagtttcgttttggtataagtttcgtttcgtttcg
gi|7 : atttctctttactggtgttgtacaaaaaccttgtaatttcatctatgacagagttgttgacgaaaGTGTTAGCGAGCAGACAGCAGAGGGTTGAAG-GGG-AAAA--AG-AAGACAAAAATATGACACAGGCCTCTTC----TCTAAGGGCTATTT--AAC-ATTC-AG---TA----GAAATTGTGAAAGATCTCGTC-TA-TTTTG-TAT--TG-G------C-TG---T-------TA---A-CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAATCAAAAAA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCAAGAAT--TATCG-TTA----CA----TTTA-AATGACACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTTATTGC--TATTATCAATTAAA------T--AGTTTGGTTATAC----AATGTT-C-CGTTTTTCTT-TGTTTCG-GTAT
gi|8 : GTGTAAGATCTAGTC-TA-TTTTG-TAT--TG-GAGTG--C-TG---T-------T----A-CA-T---TCAG-CCC-TGTTATTTCAA--AAAAATAA-TTAATC-AAACG--AAGATGTTT-A--------CT---TATT-GACTTAAA-TAAGATCACGAAT--GGTCGTTTA----TA----TTTA-CATGCCACAC----TTC--CTGTATG---CC-TAT------AA--CT--GAGA-TGCT-C-GCCATTTTATTGC--TATTATAAATTAAA------T--AGTTTTGTTGCAC-----ATGTT-T-C--TTCTCTT-TTTTTCG-GTAT
blockSeqs : C G T T GAAAAAG C GATC TT T T TTT TATA C C A . AT . GTGCTGTGACATTG TAG T ATCAA . TCAA T A A A T ATTACTTA AGT A T AT T . AAAT T ATCT GG AG ATAATT TC . T . A C T TA TACATG GT T CAAA C . C T
blockSeqs : . C T . AAAAAAT A . . . C . . C . . . . . AGGCGTGG . . A . AA . C A . . A . . . . . . . . . . . . . . . . . C . . . . A . . . . .
blockSeqs : . T . AAAAAG C . . . . . . C . . . . . GTGGCCTT . . T . CA . A A . . . . . . . . . . . . . . . . . . . . C . . . . A . . . . .
blockSeqs : T . GAAA A . . . . . . C . . . . . GTGTTCG . . A . CT . A A . . . . . . . . . . . . . . . . . . . . C . . . . G . . . . .
blockSeqs : . . . A . . . . . . C . . . . . GTGCTGT . . T . TA . A A . . . . . . . . . . . . . . . . . . . . G . . . . G . . . . .
blockSeqs : . . . . . . . . . . C . . . . . GTGCTGT . . T . TG . A A . . . . . . . . . . . . . . . . . . . . C . . . . T . . . . .
blockSeqs : . . . . C . . . . . GAGCTAT . . T . CA . . . . . . . . . . . . . . . . . . . . . . . C . . . . G . . . . .
blockSeqs : C . . . . . GTGCTTT . . A . TA . . . . . . . . . . . . . . . . . . . . . G . . . . .
blockSeqs : A . . . . . GTGCTGT . . T . CA . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . CTGT . . T .
blockSeqCons : AAAAA***** *** GTGCTGT************* CA**** **** **
originalCons : GTGTTAGCGAGCAGAGGGCAGAGAATTGAAG-GGG-AAAA--AG-AAGACAAAAATACGACACAGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AG---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-GA--G--C-TG---T-------TA---A-CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAATCAAAACA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCACGAAT--TATCG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTTATTGC--TATTATAAATTAAA------T--AGTTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTAT
finalCons : GTGTTAGCGAGCAGAGGGCAGAGAATTGAAG-GGGAAAAA-----AAGACAAAAATACGACACAGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AG---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-GAGTGCTGT-------------TA---A-CA-T---TCAGTCTC-TGTTATTCA----AAAAATAA-TTAATCAAAACA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCACGAAT--TATCG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTTATTGC--TATTATAAATTAAA------T--AGTTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGTATAATTATGTATTACATACGCTCAGTTTCCATTATTATCATAATCCAATACTAGTAGTCCACTATTACAGTCTATTTCGTTTCGCTCTGTTTCTATTCAGTTTGATTTTGTTTCGGTAGGTTCCTTTTGGTAGATTTCGTTTCGTTCGCACTTTACAGGTACCCTATAAACACATTGCATTTGGTAAATGCAATTTACCATCAAACTGAAATTCGATCATTTAC
Unaligned ( gi|14 ): AGAGTTTCATTTAGGTAGATTTCGTTTTGCACTTTAGAGGTACCCATAAATATCCATAGGCCATATCGAAATGGGGCAGCAAACAAATATCATCTGTTACA
Unaligned ( gi|16 ): TCGAGCTTATAAATATATATTAATTCAATGTTAAATGTCCATAGATAATT
Alignments
lowQualScore : 33333333 1111 1 111 1111 1111111 11111 1 11111111 1111 1111 1111 111111 111111
lowQualScore : 6 2 5 5 2 44444444 0000 77 5 0 333 0000 1 3 3 3 55 3 55 3 5555555 55 00000 3 666666 4 0 3 8 4 88888888 777 4 4 66 5 0000 0000 5 0 0000 66 55 222222 66 66 4 4 4 1 4 55 0 111111 55 3 8888 4 4 4 4
lowQualScore : . . . . . ........ .... .. . . ... .... . . . . .. . .. . ....... .. ..... . ...... . . . . . ........ ... . . .. . .... .... . . .... .. .. ...... .. .. . . . . . .. . ...... .. . .... . . . .
lowQualScore : 7 5 0 7 1 11111111 6666 99 7 0 888 6666 4 6 6 6 00 6 00 6 5555555 00 55555 6 666666 0 5 2 0 0 55555555 000 0 0 99 0 6666 6666 0 2 6666 99 55 888888 11 11 4 4 4 1 0 55 7 555555 55 2 5555 0 0 4 4
consensus : GTGTTAGCGAGCAGAGGGCAGAGAATTGAAG-GGGAAAAA---A--AGACAAAAATACGACACAGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AG---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-GAGTG--C-TGT-------TAA--CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAATCAAAACA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCACGAAT--TATCG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTTATTGC--TATTATAAATTAAA------T--AGTTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTAT
Reference ( family-1311 ) : GTGTTAGCGAGCAGAGGGCAGAGAATTGAAG-GGGAAAAA---A--AGACAAAAATACGACACAGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AG---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-GAGTG--C-TGT-------TAA--CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAATCAAAACA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCACGAAT--TATCG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTTATTGC--TATTATAAATTAAA------T--AGTTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTAT
gi|1 : C----TCTTCGGGCTATTT--TAC-AGTC-AGC--TA----AGAAGTGTGTAACATCT-GTC-TA-TTTTGGTAA--TGCGATTG--C--GT-------TAA--CC-A---TCAGTCTCCTGTTACTT--ATAAAAAATA--TTAATCCAAACATCAAGATGTTT-A--------CG---TACT-GATTCGAA-
gi|1 : ACGA--CCGTAT------TA--CTCTGAGA-TGCTTC-GC-A-TTTATTGC--TAT--CAAATT-AA------T--TGTTTGTTTGTAT----AATGTT-CTTTTTTCTCTT-TGTCTTG-GTAcgaacgaccgtattactctgagatgcttcgcatttattgctatcaaattaattgtttgtttgtataatgttcttttttctctttgtcttggtaccgtggtctcgttcgttaggttcattcgttcggtatacgctttcgttttcgtttcggtgggtttcgtttcgtttcggctggatgtcggttcttcgtttcgtgtatcattcgtcttcggtcaggctttcgttttcgtattcggttatttcgtttgggtggtaattcccgtttcgtttcgcggtgggatttcgtttgtttcgcatttacaggtacccacaacacttgaacaaaactgctacgaccttgaacaaatgtaaataattacttgaagtgattggataattc
gi|10 : ctcttcgggctattttacagtcagctaagaagtgtgtaacatctgtctattttggtaatgcgattgcgttaaccatcagtctcctgttacttataaaaaatattaatccaaacatcaagatgtttacgtactgattcgaacgaC-AG---TA----AGAAGTGTGTAAGATCT--TC-TA-TTTTG-TAT--TG-GAGTG--T-TCG-------TAA--CA-A---TCAATCTC-TGTTATTA--A--AATAATAT-TTAATCA----A-TAA------T-A--------CT---TACT-GACTTGAA-TAAGATGACccgtggtctcgttcgttaggttcattcgttcggtatacgctttcgttttcgtttcggtgggtttcgtttcgtttcggctggatgtcggttcttcgtttcgtgtatcattcgtcttcggtcaggctttcgttttcgtattcggttatttcgtttgggtggtaattcccgtttcgtttcgcggtgggatttcgtttgtttcgcatttacaggtacccacaacacttgaacaaaactgctacgaccttgaacaaatgtaaataattacttgaagtgattggataattc
gi|10 : ATGA--CCGTATATAATTTA--CT--GAGA-TACT-C-GCCA---TA-----------------AAA------T--ATTTTGCTTGTAT----AATGTT-C-CGcgtatataatttactgagatactcgccataaaatattttgcttgtataatgttccg
gi|11 : cagtaagaagtgtgtaagatcttctattttgtattggagtgttcgtaacaatcaatctctgttattaaaataatatttaatcaataatacttactgacttgaataagAAG-TCTCGCT-TAATTTTG-CAT--TG-GAAGG--CGTGG-------T----CA-T---TCAGTTTC-TGTTGTTC--A--GAA--TAA-TAAATTCAAACAACAAGATGTAA-AA-------CT---TAC------TGAG-TGAG-TCACGAAT--TAATG-TTATTCTTA----TTAA-CATTTCAAA------------GTATGA--TC
gi|12 : GGGCAGATAATTGAAG-GGGAAGAGTAGA--AGACAAAAATAAGGCACTGATCCCTTC----TATCGGGACTATTT--AAC-TTTC-AATTTTA----AAAAGTGTGTATGATCTCGTC-CT-TTCTT-TCG--TG-GAGTG--C-TGT-------TAA--CA-A---TC-GTCTT-TGTTAaag
gi|13 : GTGTTAGCGAGCAGAGGGCAAAGAAT-----------------A--CGATAAAAATACGAAACAGGCCCCTTC----
gi|15 : atttctctgtactagtgttttacaaaaactttgtaatttcatctgaaacaagagA-TTTATTGC--TATTATAA-TTAAA------TGTAATTTGGTTACAC----AATGTT-C-TGTTTCTTTTCTATTT-G-GTATgatct
gi|2 : tataAGATCTCGTCCTA-TTT-G-TAT--TG-AAGTGGCC-TTTA------TAGATCA-T---ACAGTCTC-TGTTAGTC--T--AAAAATAATTTAATC-AGACT-CAAGATGTTT-T--------AT---TACTAAACTTGAATTAAGATCACGAAT--TGTC--TTA----CAAAATTTTATCATGTAAAACATCTTTCGGCTGTATGAAGACGTAT------CATCTT--GAGGTTGCT-CAGCCA-TTTATTG---TATGTGAGAATGGA------T--A--TTGCTTGAACCAAAGATGTTCC-CGTTTATCTT-CTTTCCATGTATagagtttcatttcgtttcagtagg
gi|3 : GGCAGAGAATTGAAG-GGGGAAAA---AGAAGACAAAAATACAACACAGG------------------GCTATTTTTAAC-AATC-AA---TATATAGGAAGTGTGTAAGATTTCGTC-TG-TTTTG-TATATTG-GAGTG--C-TGT-------TAA--CAATCAATCAGTCTC-TGTTATTT--A--AAAA-TAA-TTGATCAAA-CA-CAAGATGTTTTA--------CT---TACT-GATTTGAA-TGAGATCACGAATATTATCG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTCATTGC--TATTATAAATTAAATACATGT--AATTTGGTTGTAC----AATGTT-C-CGTTTCTCTT-TGTTTCG-GTATacagggtttcgggttggcaagtaggttttcattcgtttcggtataagcgtatcgtttcgtttcggtgggtttgttttcgtttcgtagatttcgatttcggtaaataggtttcgttccgttcgatgtgtttgtttggtttcggtatatttgtttcagtgacttatttcgtttctatgttcgtttcgcactttacaggtaccaac
gi|4 : GTGTTAGCGAG------GCAAAGAAT-----------------A--CGACAAAAATACGAAACAGGCCCCTTCGATCTCTCGGGGCTATTT--AATTATTTTAG---TA----GGAAG--------ATCTCGTC-TA-TTTTG-TAC--TG-GAGTG--C-TGTGACATTGTAA--CA-T---TCAGTCTC-TGTTATTT--G--AAAAATAA-TCTTTCAAA-CA-CAAGATGTTT-AATTACTTACTAGTTACT-GACTTGAA-TAAGATCACGAGT--TATTG-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGTAT------GA--CT--GAGT-AGCT-C-GACA-TTTATTGCTATATTATAGATAAAA------T--AGTTGGGTTGTAC----AATGTT-C-CATTTCTCTT-TGTTTCG-GTATaatgtttggtttctgtaggtttcgtttcggtagatttcg
gi|5 : acaagagCAGAGGATTGAAGTGGGAAAAA---ATAAGATAAAAATACGACACAGGCCCCTTC----TCACGGGACTATTT--AAC-ATTCCAG---TA----GAAAGTGTGTAAGATCTCGTC-TA-ATTTG-TAT--TG-GAGAG--C-TAT-------TAA--CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAAT-AAAACA-CAAGATGTTT-A--------CT---TACT-GACTCGAA-TAAGATCACGAAT--TATCA-TTA----CA----TTTA-CATGCCACAC----TTC--CTGTATGA--CCGGAT------TA------------------------TTATTGC--TATTACAAATTAAA------T--AGTTTGGTTGTAC----ACTGTT-C-CGTTTACCTT-TGTTTCT-GTAagtgtttcgtttcggtaggt
gi|6 : aAGAGAACTGAAG-GGGGAAA----------------TACGACACTGGCCCCTTC----TCTCGGGGCTATTT--AAC-ATTC-AA---TA----GGAAGTGTGTAAGATCTCGTC-TA-TTTTG-TAT--TG-GAGTG--C-TTT-------TAA--CA-A---TCAGTCTC-TATTATAT--A--AAAAATGA-TTAATT-ATACA-CAATATGTTT-A--------CT---TACT-GACATGGA-TAAGATCACGAAT--TATCG-TTA----CA----T------------------TTC--CTGTATGA--CCATAT------TA--CT--GAGA-TGCT-C-GTGA-TTTATTGC-----TATAAATTGAA------C--ATTTTGCTTGTAT----AATGTT-C-TGTTTCTCTT-TGTTTTG-GTggtttcatttcgtttccatataagtttcgttttggtataagtttcgtttcgtttcg
gi|7 : atttctctttactggtgttgtacaaaaaccttgtaatttcatctatgacagagttgttgacgaaaGTGTTAGCGAGCAGACAGCAGAGGGTTGAAG-GGGAAAAAG--A--AGACAAAAATATGACACAGGCCTCTTC----TCTAAGGGCTATTT--AAC-ATTC-AG---TA----GAAATTGTGAAAGATCTCGTC-TA-TTTTG-TAT--TG-G------C-TGT-------TAA--CA-T---TCAGTCTC-TGTTATTC--A--AAAAATAA-TTAATCAAAAAA-CAAGATGTTT-A--------CT---TACT-GACTTGAA-TAAGATCAAGAAT--TATCG-TTA----CA----TTTA-AATGACACAC----TTC--CTGTATGA--CCGTAT------TA--CT--GAGA-TGCT-C-GCCA-TTTATTGC--TATTATCAATTAAA------T--AGTTTGGTTATAC----AATGTT-C-CGTTTTTCTT-TGTTTCG-GTAT
gi|8 : GTGTAAGATCTAGTC-TA-TTTTG-TAT--TG-GAGTG--C-TGT-------T-A--CA-T---TCAG-CCC-TGTTATTTCAA--AAAAATAA-TTAATC-AAACG--AAGATGTTT-A--------CT---TATT-GACTTAAA-TAAGATCACGAAT--GGTCGTTTA----TA----TTTA-CATGCCACAC----TTC--CTGTATG---CC-TAT------AA--CT--GAGA-TGCT-C-GCCATTTTATTGC--TATTATAAATTAAA------T--AGTTTTGTTGCAC-----ATGTT-T-C--TTCTCTT-TTTTTCG-GTAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGTATAATTATGTATTACATACGCTCAGTTTCCATTATTATCATAATCCAATACTAGTAGTCCACTATTACAGTCTATTTCGTTTCGCTCTGTTTCTATTCAGTTTGATTTTGTTTCGGTAGGTTCCTTTTGGTAGATTTCGTTTCGTTCGCACTTTACAGGTACCCTATAAACACATTGCATTTGGTAAATGCAATTTACCATCAAACTGAAATTCGATCATTTAC
Unaligned ( gi|14 ): AGAGTTTCATTTAGGTAGATTTCGTTTTGCACTTTAGAGGTACCCATAAATATCCATAGGCCATATCGAAATGGGGCAGCAAACAAATATCATCTGTTACA
Unaligned ( gi|16 ): TCGAGCTTATAAATATATATTAATTCAATGTTAAATGTCCATAGATAATT