lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 11111 1 11 11 44444444444444 1 3 11111111 5555 1 1111 4444444444444444444444444444 11 3333333333333333333333333 1111111 44444444444444444444444444444444444444444444444444444444444 1111 1 11 666666666666666 11 2 33333333333333333333333 22222 22222 111 888888888888888888 1 3333 1 111 44444444 22 1111 111
lowQualScore : 5 4 66666666 99 4 4 4 4 00000 4 99 777 4 66 2 4 88 777 4 99 4 77 5 3 3 3 55 8 3 3 3 777 0 3 99999999999999 6 8 4 2 9 2 3 77777777 5 66 55 6666 8 4 0 3 88888 11 8 0000 5 5 66 7 2 66 1111111111111111111111111111 00 5555555555555555555555555 4444444 8 66 9 44444444444444444444444444444444444444444444444444444444444 9999 4 8 7777 0 0 5 88 777777777777777 00 0 6 7 66 55555555555555555555555 5 5 66 55555 5 1 1 1 11 44444 000 222222222222222222 3 77 2 9 6 2 55 88 0000 55 777 1 4 666 4 4 000 0 555 88888888 77777 22 3 3 3 3 3 44 4 2222 4 4 222 4 5 5 66
lowQualScore : . . ........ .. . . . . ..... . .. ... . .. . . .. ... . .. . .. . . . . .. . . . . ... . . .............. . . . . . . . ........ . .. .. .... . . . . ..... .. . .... . . .. . . .. ............................ .. ......................... ....... . .. . ........................................................... .... . . .... . . . .. ............... .. . . . .. ....................... . . .. ..... . . . . .. ..... ... .................. . .. . . . . .. .. .... .. ... . . ... . . ... . ... ........ ..... .. . . . . . .. . .... . . ... . . . ..
lowQualScore : 0 4 11111111 99 4 4 3 0 00000 9 55 000 4 11 3 4 44 000 0 44 0 55 1 6 6 6 00 5 6 6 3 888 5 6 66666666666666 0 1 0 0 4 0 8 33333333 0 99 11 0000 1 0 2 6 33333 88 8 6666 0 0 99 2 0 11 6666666666666666666666666666 66 2222222222222222222222222 4444444 2 11 0 11111111111111111111111111111111111111111111111111111111111 4444 4 9 5555 5 8 0 99 000000000000000 22 1 9 5 99 22222222222222222222222 0 0 99 33333 7 4 7 4 11 11111 000 555555555555555555 9 88 3 2 6 4 00 66 1111 55 000 8 0 777 0 0 555 4 888 22222222 22222 33 6 6 6 6 6 55 4 3333 4 4 222 4 0 0 99
consensus : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGAT-AT--GGGTTGTT-T-AAA---GAA-CATTCAAA-G-CTTTATCNTTA-A-CA-AA--TGGTTA-T-CACCAAT-CAAATAATCGG--TATTCA-T--AAGA---ANACGCACCTTTAAAACANAGCTATTATGCCACACTAAGG-ACCAATC---AA---ATAATC-AGTAT--TCATTAAAAAANN--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTT-AAAATCGAATTGGACAACAGATGATTGAGGT-G---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGA----TGTTTTG-AC-AAAACGAAATTG--ATACTGCCAGTA--CTAT--------------AC------------ATATG--CATGTC-------CG-------CG-------TAAT-------TTCATGGGT--GTGAGAAA--------------GG------TA----------T----------T----T--------AA----A-AA-AGAA---CTTTAGGTTTGT-ATG-TAAAT--AAGTG----TCATAC-TGGTTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATA--ACTAT-GACGTGAAATAAAAACAAATTCTGGTTAAATGTTTAAACGATGA---TGTATTT---GAT-----------TAA-GAACACTGATGCATATGGATCAAAGTGGA-TTTATTGTTTGTCGTTGACTGCTTT--A--C--A-C--CT---GAAAAT-ATGTAAG-T-GCCTG--AAAATCACTTGT-TNACTATTATTTTCACTCAAAATA-------TGTTCC--GACC--A-A-AT-TC-AG-TCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
Reference ( gi|1 ) : CCTCTA-GCAT-CCATTGTA--------AAAT-T-TCT-CACCG-CT-----GAAAAAG--CCAA---TTTTGAT-AT--GGTTTGTT-T-CAA---GAA-CATTGGAA-G-TTTTATCCTTA-A-CA-AA--TGTTTA-T-CACCAAT-CAAATAATCAG--TATTCA-TAAAAAA---AAAAACACTTGTAAAACATAGCTATTGTGCCACACTAAGGNACCAATC---AA---ATAATC-AGTAT--TCATTAAAAAAAAAACACCTGTAAAACATAGCTATTATGCCACACTAAGGATTAATCCATAATTTT-AAAATCGAATTGGACAACAGATGATTGAGGT-G---AAGGTCGTTTACTAAAATTTCGGAATGGAATTCAGG----TGTTTTG-AC-AAAACGAAATTG--ATTCTGCCAGTA--CTAT--------------AC------------ATATA--CATGTC-------TG-------CA-------TAAT-------TTCATAGGT--GTAGGAAA--------------AG------T-----------T----------T----T--------AA----A-AA-AAAC---CTTCAGGTTTGT-ATC-TAAATTTAAGTG-GCATTATAT-TGGTTTATTCTTGTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATA--TTCAT-GACGTGAAATAAAAACAAATTCTGGTTAAATGTTTAAACGATGG---TGTATTT---GAT-----------T------CACTGATGCGTATGGATTAAAGTGGATTTTATTGTTTGTCATTGACTGCTTT--A--C--A-C--CT---GAATAT-GTGCAAG-T-GCCTG--AAAATCACTTGT-TTACTATTATTTTCACTCAAAAT--------TGTTCC--GACC--A-A-AT-TC-AG-TCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|6 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-GGCCA-ATTTAATGAAAAGG--CCAA---TTTTAAT-AT--TGGTTGAT-T-AAA---GAA-CATTCAAA-G-CTGTATCAATA-A-CA-GA--TGGTCA-T-CACCAAT-CAAATAAT-GGTATATTCG-T--ACGA---AGATGCACCTTTAAATCAAAACTAGTCTGCTACACTAAGG-ATTAATC----C---ATAAT
gi|14 : aCCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAA--CCAA---TTTTGAT-AT--GGGTTGTG-T-AAA---GAA-CACCCAAA-G-CTTTATCCTTA-A-CA-AA--TGTTTA-T-CACCATT-CAAATAAACAG--TATTAA-T-TAAAA---AAACGCACCTTTAAAACATAGCTATTATTCCACACTAAGG-ATTAATCCATAA---ATttgaaaattaaatttcacaacagattattgcggtgaaggtcgcttgctaaaatttctgaacggaattgaaatgttttgacaaaacgaatttgatacttgcagtaatatatttgccttggaaaacatgtgcttgtccacataatacgtaattttattggtgtgagaaaggtatagataataaatgaaaaaagaactttaggttagcatgtaaataaaagtgtcatactatgtattttattcatttcaacacgaacagaggatgaaaaacttttgttttctgaaaaacaatctgcaaaataattatgacgtgaaataaaaata
gi|15 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAG--TCAA---TTTTGAT-AT--GGGTTGTT-TAAAA---GAAGCATTCAAA-G-ATTTAT-CTTA-A-CA-AA--TG-TTA-T-CAACAAT-CAAATAATCAG--TATTCA-T----TA---AAACGCACCT-TAAAACATAGCTATTATGCCACACTAAGG-ATCAATC----C---ATAATttaaaattgaa
gi|10 : aaCCTCTA-GCAT-CCATTGTACATTGTAAAAAA-T-TCT-CGCCG-CT-----AAAAAAG--CCAA---TTTTGGT-AC--GGGTTGTT-T-AAA---GAA-CATTCAAA-G-CTTTATCCTAA-A-CA-AA--TGTTTA-T-CACCAAT-CAAATAATCAG--TATTCA-T--TAAA---ACACGCACCTTTAAAACGTAGCTGTTATGCCACACTAAG-----AATT---AATTCATAATttaaaatcgaa
gi|4 : aaCCTTTA-CCAT-TCATTGTA--------CCAT-C-TCT-CGCCG-CT-----GGAAAGG--CCAA---TTTGGGA-AT--GGGTTGTT-C-AAA---GAA-TATTCAAA-G-TTTTGGCATTA-A-CG-AA--TGGTCA-T-CAACAAT-CAAATACT------------------A---AGACGCACCTTTAAAATAAAGCTATTCTGCCACAGTAAGG-----AT----------TAGTCTAGAAT--T--TTAAAAAtttaaaatcgaattagacacagatgactgaggtgaaggtcgtttactaaaatttc
gi|21 : aCCTCTA-GCAT-CC-TTGTA--------AACT-G-TCT-CACTG-CT-----GACAAGG--CCAA---TTTTGAT-AT--GGGTTGTT-T-AAA---GGA-CAGTCAAA-G-TTTTATCATCA-A-CA-AA--TGGTTA-T-CACAAAT-CAAATAATtcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|19 : taaCTTCTAAGCATTCCATTGTC--------AAATATGTCT-CGCCGGCT-----GAAAA-G--CCAA---TTTTGGTAAT--GGGTTGTT-T-ATA---TAA-CATCGCAATGCTTCTATCTTTACA-CA-AA--TGTATATT-CACCAAC---AATATTCGG--TATTCA-TAAAAacgtaat
gi|27 : gacCCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-TGCCG-CT-----GAAAAGGCTCCAA---CTTc
gi|3 : aa-CCATTTTA--------AAAT-T-TCTTCGCCG-CT-----GAAAAGGA-CCTA---TTTTGAT-ATCGGGTTATTT-T-TAAATAGAA-CTTTCAAA-G-CTTTATCATTA-G-CACAACTTGGTTA-TACACCAAT-CAAATAATCAA--TATTCACTGAAAg
gi|2 : G-CA-----GAAAAGG--CCAGCTGTTATGAT-AT--GGGTTGTTAT-AAA---GAA-TATTCAAA-A-CTTTATCATTA-A-CA-AA--TGGTCA-T-CACCAAC-CAAATAATCGT--TGTTCA-T--ACGG---AGACGCACCTTTAAAACAAAGTTA-AATGCCACACTAGGGAA-TAATC----C---ATAATtatttttttaaattttaagaacgaatggaaaacagatgattgagatggaaggtcttttattaaaattttgaaccggcattgagattgttattttgaacaaaaagaaattggagtactgccagtactataccgatatagcatgtaacaactgtacactatgcagtatccgataatacgtaactgtgattttatgggtttgtaaaaaataatgaattacttcagtcatttacgaaaaacgaactttaggattgtgattgtaaataaagtgttatactgattatttccttcaaaacgaaccttaatgagtcctctgtggatgctatgttaatttcgttttcttgaaaccacgatctgcaaaaaaaatctattgacgtgaaataaaaacaaacgctgattaaatgtttaaacaattgatatgtaattgaagataatgaggcatgtcaatgcatatgaataaatggaccttgttcagagccttgatgttactccctgaag
gi|25 : tAA---GAA-AATTCAAA-G-GTTTGTCATTT-T-CA-AA--TGGTTA-T-CACCAAT-TAAATAATCGT--TATTTA-TTAAAAA---tctaaaatcgaattggatgacagatgattgaaggaaaggtcgtttactaaaattcagaaccaaattgagatgttctgacaagacgaaattgatactgccagtactatacatatgcatgtccgcataatacgtaattttatgggtgtgagaaaggtataaattgtaaatgaaaaaagaaccttaggttagtatgtaaataaatgtgccatactggtttattcctttaaaaacaaactgatgatgcaatatttttgtttttttgaaaaagatctgcaaaataagtatgacctggaactggttaattaaatgtatttaatgcaggagggtcaaagtggatgtttgttattgactgctttacctcctgaaaatatgtaagtgcccgaaaatcatttgttgattattagatttacttaatatacattgtatgttctgcctaaaattcagtcggaatctgcgcgttaaaaagtaaggttcgtattttg
gi|11 : gttatcttaaTTCTTCTTA-ATCA-------TTCA-T-CA--AATGCAAATAATCA---TACT------AAGGTGTACACGCACCTTTAAAACAAAGCTATTCTGCCACACTAAGG-ATCAATC----C---ATAATgtccacctttagaaaag
gi|22 : aCAAT-CAAATAATCAG--TATTCA-TTCAAAA---ACC--CACCTTTAAAACATAGCTACTATGCCATATCAAGG-ATTAATC----A---ATAATtttaaaatcgaatttgactaatgactgaggtgttcaaggtcgtctactaaaattgagatgtttcgatactgtcaatactatactttgctttgtgcaaggtaaaagtgattgttacataatg
gi|2 : ACCAACC---AA---ATAATC-GTTGT--TCAT--ACGGAGACGCACCTTTAAAACAAAGTTAA-ATGCCACACTAGGGAATAATCCATAATTCT-AAAATCGAATTGGATGACAGATGATTGAAGG-A---AAGGTCGTTTACTAAAA-TTCAGAACCAAATTGAGA----TGTTCTG-AC-AAGACGAAATTG--ATACTGCCAGTA--CTAT--------------AC------------ATATG--CATGTC-------CG-------CATAATACGTAAT-------TTTATGGGT--GTGAGAAA--------------GG------TA----------TAAA-------T----TGTAAATGAAA----A-AA-GAAC---CTT-AGGTTAGT-ATG-TAAA--TAAATGTGC--CATAC-TGGTTTATTCCT-TTAAAAACAAAC--TGATGA------------TGCAATAT--TTT-TGTTTTTTTGAAAA--A-GATCTGCAAAATA--AGTAT-GACCTGGAA------------CTGGTTAA----TTAAA---------TGTATTT---AAT-----------G------CA-GGA-------GGGTCAAAGTGGA------TGTTTGTTATTGACTGCTTT--A--C--CTC--CT---GAAAAT-ATGTAAG-T-GCCCG--AAAATCATTTGT-TGATTATTAGATTTACTTAATATACATTGTATGTTCT--G-CCTAA-A-AT-TC-AG-TCGGAATCTGCGCG-TT---AAAA-AGTAA---G-GT-T-CGTA--TTgtttaaatcgaattagacaacagatgattgaggtgaag
gi|6 : tgcagaaaaggccagctgttatgatatgggttgttataaagaatattcaaaactttatcattaacaaatggtcatcACCAATC---AA---ATAAT--GGTATATTCGT--ACGAAGATGCACCTTTAAATCAAAACTAGTCTGCTACACTAAGGATTAATCCATAATTTG-AAAATTAAATTTCACAACAGATTATTGCGGT-G---AAGGTCGCTTGCTAAAATTTCTGAACGGAATTGAAA----TGTTTTG-AC-AAAACGAATTTG--ATACTTGCAGTA--ATATATTTGCCTTGGAAAAC------------ATGTG--CTTGTCCACATAATA-------CG-------TAAT-------TTTATTGGT--GTGAGAAA--------------GG------TA----------TAGATAATAAAT----G--------AA----A-AA-AGAA---CTTTAGGTTAGC-ATG-TAAATAAAAGTG-TCATACTATGTATTTTATTCAT-TTCAACACGAAC--AGAGGA------------TGAAAAAC--TTT-TG-TTTTCTGAAAA--ACAATCTGCAAAATA--ATTAT-GACGTGAAATAAAAATAttg
gi|14 : acctctagcatccattgtaaaaattctggccaatttaatgaaaaggccaattttaatattggttgattaaagaacattcaaagctgtatcaataacagatggtcatcACCATTC---AA---ATAAAC-AGTAT--TAATTAAAAAAACG-CACCTTTAAAACATAGCTATTATTCCACACTAAGGATTAATCCATAAATTT-AAAATTGAA
gi|10 : cctctaacatccattgtaaaaattctcgccgctgaaaaaaccaattttgatatgggttgtgtaaagaacacccaaagctttatccttaacaaatgtttatcACCAATC---AA---ATAATC-AGTAT--TCATTAAAACACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGAATTAATTCATAATTTT-AAAATCGAATTAGAC-ACAGATGACTGAGGT-G---AAGGTCGTTTACTAAAATTTC
gi|3 : aacctctagcatccattgtacattgtaaaaaattctcgccgctaaaaaagccaattttggtacgggttgtttaaagaacattcaaagctttatcctaaacaaatgtttatcACCAATC---AA---ATAATC-AATAT--TCACTGAAA
gi|15 : ccattttaaaatttcttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacCAATC---AA---ATAATC-AGTAT--TCATTAAAACG----CACCT-TAAAACATAGCTATTATGCCACACTAAGGATCAATCCATAA-TTT-AAAATCGAAtatttttttaaattttaagaacgaatggaaaacagatgattgagatggaaggtcttttattaaaattttgaaccggcattgagattgttattttgaacaaaaagaaattggagtactgccagtactataccgatatagcatgtaacaactgtacactatgcagtatccgataatacgtaactgtgattttatgggtttgtaaaaaataatgaattacttcagtcatttacgaaaaacgaactttaggattgtgattgtaaataaagtgttatactgattatttccttcaaaacgaaccttaatgagtcctctgtggatgctatgttaatttcgttttcttgaaaccacgatctgcaaaaaaaatctattgacgtgaaataaaaacaaacgctgattaaatgtttaaacaattgatatgtaattgaagataatgaggcatgtcaatgcatatgaataaatggaccttgttcagagccttgatgttactccctgaag
gi|22 : aacctctagcatccattgtaaaaattctcgccgctgaaaaagtcaattttgatatgggttgtttaaaagaagcattcaaagatttatcttaacaaatgttatcaaCAATC---AA---ATAATC-AGTAT--TCATTCAAAAACC--CACCTTTAAAACATAGCTACTATGCCATATCAAGGATTAATCAATAATGTT-TAAATCGAATTAGACAACAGATGATTGAGGT-G---AAG
gi|4 : CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGGATTAGTCTAGAATTTTAAAAATCGAATTGAACAAC--ATAATT------------GGTCGTCAACTAAAATTTCGGAACAGAATTGAGA----TGTTTCA-ACGAAAATGAAATCG--ATACCGTCTGTA--CTGT--------------ACTTGCTTAGTGCAATGTAGGCATATC-------AGTATAACACG-------TAAT-------TTCATGGGT--GTGAGAAA--------------GG------TAGAAA------T----------TA---T--------AA----A-AATAAA
gi|11 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggcattaacgaatggtcatcaacaatcaaatactaagacgCACCTTTAAAACAAAGCTATTCTGCCACACTAAGGATCAATCCATAATTTT-AAAATCGAATTTGACTA---ATGACTGAGGT-GTTCAAGGTCGTCTACTAAAATTttacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|5 : attcttcttaatcattcatcaaatgcaaataatcatactaaggtgtacacgCTGTTATGCCACACTAAGAATTAATTCATAATTTT-AAAATCGAATTAGACA-CAGATGACTGAGGT-G---AAGGTCGTTTACTAAAATTTCGGAATGAAATGCAGG----TATTTTG-AC-AAAACGAAATTG--ATTCTGCCCGTA--CTAT--------------AC------------GTCCG--CATA-A-------TA-------CG-------TAAT-------TTCATGGTT--GTATGAGA--------------AG------TGTAAATTATAAT----------T----T--------AA----A-AA-TGAA---CTTCAGGTTTGT-ATG-TAAAATTAAGTG----TCATAC-TGGTTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CA-TTTTCGGAAAA--ACGATCTGCAAAATA--TCTAG-GACGTGAAATAAAAACAAATTCAGG--------TTAAACAAT---------------------------------------TGATGCATATGGATTAATGTGGA-TTTATTGTTTGTCAATGACTGCTTT--AT-C--A-C--CT---GAAAAT-GTACAAT-T-GCCTG--AAAATTACTTGT-GTACTATTATTTTCACTCAAAATA-------TGTTTC--GACC--A-A-AT-TC-AG-TCGGAATTAGCTCG-TT---AAAA-ATG-G---G-GT-T-CGGATGTTAGAgagatgtttcgatactgtcaatactatactttgctttgtgcaaggtaaaagtgattgttacataatg
gi|8 : CTATTATGCCACACTAAGAATTGATCCATAAATAT-AAAATCGAATTGGAAAACAGATGTTTGAGAT-----ATGGTCTTTTA-TCAATTTTTGGAATGGCATTGAGA----TATTTTG-AC-AAAACGAAATTC--ATAATGCCAGTA--CTGT--------------AC------------ATTTG--CATATC-------CA-------CA-------TAA----------------T--GCA-------------------------------------------------------T--------AA----A-AA-AGAA---CTTTAGGTTTGT-ATG-TAAAT----------GTCCTAC-TGGTGTATTTATTTTAAAAACGAAC--TGg
gi|3 : AATTTT-AAGAACGAAT-GGAAAACAGATGATTGAGATGG---AAGGTCTTTTATTAAAATTTTGAACCGGCATTGAGATTGTTATTTTGAAC-AAAAAGAAATTGGAGTACTGCCAGTA--CTAT--------------ACCG----------ATATAG-CATGTcaaaaacattctggataaatgtttaaaagacgatgtatttgattaaagaacaccgatgctcatggatcaaagtggatttattgtttgtcattgactgatttacc
gi|7 : ccattttaaaatttcttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatatttttttaAAATCAAATTGGACAAAAGATGATTGAGGT-G---AAGGTCGTTTACTAAAAT-----------A---AGG----TGTTTTG-AC-AAAACGAAATTG--AATCTGCC-TTA--TTAT--------------AC------------ATATG--AATGTC-------CG-------CA-------TAATACGTAATTCCATGGGT--GTAGAAAA--------------AG------TGTAAA------T----------TATAAT--------AA----A-AATAGAA---CTTCAGGTTTGT-A-----AATTAAAGTG----TCATAC-TGGTTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATA--GTTAT-GATGTGAAATAATAACAAATTCCGATTAAATGTTTAAACGATGA---TGTATTT---GAT-----------TAATGAACACTGATGAATATGGATTAAA------------ATTTGTCA-TGACTGCTTT--A--C--C-C--CT---GAAAAT-GTGT-AG-T-GCCTG--AAA----------TTACTATTATTTTCACTCAAAATA-------TGTTCC--GACC--AGA-AT-TC-AG-TCGAAAaacaactgtacactatgcagtatccgataatacgtaactgtgattttatgggtttgtaaaaaataatgaattacttcagtcatttacgaaaaacgaactttaggattgtgattgtaaataaagtgttatactgattatttccttcaaaacgaaccttaatgagtcctctgtggatgctatgttaatttcgttttcttgaaaccacgatctgcaaaaaaaatctattgacgtgaaataaaaacaaacgctgattaaatgtttaaacaattgatatgtaattgaagataatgaggcatgtcaatgcatatgaataaatggaccttgttcagagccttgatgttactccctgaag
gi|24 : T-G---AAGGCCGTATACTAAAATTTCGGAATAGAATCCAGG----TGTTTTC-AC-AAAACGAAATTG--GTTCTGCCACTA--TAAT--------------AC------------ATATA--CATGTC-------TG-------CA-------TAAT-------tggggttaggatgttagaa
gi|3 : aCAGTATCCGAT--------------A---------------ATA--CGTAAC-------TG----------------TGAT-------TTTATGGGTTTGTAAAAAATAATGAATTACTTCAG------TCA---------T----------T----T--------AC----G-AA-AAACGAACTTTAGGATTGTGATTGTAAATA-AAGTG----TTATAC-TGATT-ATT-TCCTTCAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCG-TTTTCTTGAAACCACGATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACGCTGATTAAATGTTTAAACAATTGATATGTAATTGAAGATAATGAGGCATGT------CA---ATGCATATGAAT--AAATGGACCTTGTTa
gi|9 : ccattttaaaatttcttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatatttttttaaattttaagaacgaatggaaaacagatgattgagatggaaggtcttttattaaaattttgaaccggcattgagattgttattttgaacaaaaagaaattggagtactgccagtactataccgatatagcatgtaacaactgtacactatg-------TA-------CG-------TAAT-------TTCATGGGT--TTGAGAAAGTTACA--------AA------T-----------TA---------T----T--------AATAAAA-AA-AGAA---CTTTAGATTTGT-ATG-TAAATCAAAG-------------------AGTCCT-TTCAAAACAAAC--TAATGA------------T------T---TT-TG-TTTTCTGAAAA--ACGATTAGCAAAATA--ATTAT-GACATGAAATAAAAATAAACTCTGGTTAAATGTATAAACGATGA---TGTATTT---GAT-----------TAATGAACACTGATCCATATGGATCAACGTGGA-TTTATTGTTTGTCATTGACTCTTTT--A--CCTC-C--TT---AAAT-T-ATATAAG-T-GTCTG--AAAATC---------ACTATTATTTTCACTCAAAATA-------TGTTCC--GCCT--A-A-AT-TC-AG-TCcagagccttgatgttactccctgaag
gi|23 : ataaATGGGT--GTGAGAAG--------------GGCATATAT-----------T----------A----T--------AA----ATAA-AAAG---GTT-AGGTTATT-ATG-TAAAT--AAATG-TT-TCCTAC-TGGTTTATTCCT-TTCAAA-CGAAC--CGATGA------------T----T-----TT-CG-TTATCTTAAA
gi|8 : TGT--ATT-TA-TTTT---AAAA--ACGAACTGCAAAA
gi|4 : ctattatgccacactaagaattgatccataaatataaaatcgaattggaaaacagatgtttgagatatggtcttttatcaatttttggaatggcattgagatattttgacaaaacgaaattcataatgccagtactgtacatttgcatatccacataatgcataaaaaagaactttaggtttgtatgtaaatgtcctactggCCGAAAA--ACGATCCGCAAAATA--ACAAT-GACATGAAATTAAAACAAATTATGATTAAATGTTacattctggataaatgtttaaaagacgatgtatttgattaaagaacaccgatgctcatggatcaaagtggatttattgtttgtcattgactgatttacc
gi|8 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggcattaacgaatggtcatcaacaatcaaatactaagacgcacctttaaaataaagctattctgccacagtaaggattagtctagaattttaaaaatcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaAAAAACA--TTCTGGATAAATGTTTAAAAGACGA---TGTATTT---GAT-----------TAAAGAACACCGATGCTCATGGATCAAAGTGGA-TTTATTGTTTGTCATTGACTGATTT--A--C--aa
gi|13 : ctattatgccacactaagaattgatccataaatataaaatcgaattggaaaacagatgtttgagatatggtcttttatcaatttttggaatggcattgagatattttgacaaaacgaaattcataatgccagtactgtacatttgcatatccacataatgcataaaaaagaactttaggtttgtatgtaaatgtcctactggtgtatttattttaaaaacgaactgcTTTAAACAATTA---TGTGTTT---GAT-----------TAATGCACACTGATGCATATGGATCAAAGTAGATTTAAC-GTTTTACAGTGATTGCTGT--A--C----CTTCT---GAAAAT-ACTTAAGGT-TCAT---AAAGTTACTCAA-TGACTATT----TCATTCAAAATAG------TGTCCC--GCCCG-A-A-AT-TT-AT-TCGGAACTACATCG-TT---AAAA-AAT-G---G-GG-TACGAA--c
gi|12 : ------CACTGATGCAAATGGATTAAAGTGGATTT-ATTGTTTGTCGTTGACTGTTTTTTA--CC-A-C--CC---TAAAAT-ATGTATG-TTGCTTTTTAAAGTCATTTGT-TTAGTATTATTTTCACTCAAAA---------TGTTCC--GAAC--A-A-AA-TC-AG-TCGAAA-TAGCTTG-TT----TAA-AAT-G---GAGT-T-AGGA--gat
gi|16 : atgaaaagaattgactggtggcttatcaagaagagtatgattaaatgaaCTGATGCAAATGGATTAAAGTGGA-TTTATTGTTTGTCGTTGACTGTTTT--AACC--A-C--CCTAAAAATAT-GT----T-T-GCTTT--AAAGTCATTTGT-TTAGTA-TATTT--A-TCAAAAT--------GTTTCCCGGAACAAA-A-AT-TC-AG-TCGGAAATAGCTTG-TTAAAAAAA-AAT-G---G-ATGT-TGGA--gtta
gi|17 : aacGCATTGGTTAAAGTGGAATTTATTGTT-GTCATTGACTGCTTT--A--C--AAC--CT---GAAAATTGTGTCAG-A-GCCT---AAAATCACTTGTGCCACTATTATTTGTGATAAATAT--------TGTTC---GACG--C-A-ATATC-AGGTCGGA-CTAGCTCG-TT---AGAA-AAT-GGGTG-GT-T-CGGA--gtt
gi|18 : gattGGATCAAAGTACATTT-ATTGCTTGTTGCTGACTACTTT--A--C--CTC--CT---GAAAAC-ATGTACG-T-GCCGG--AAAATTACTTAT-TGGCTAATATTTTCACTCAAAATA-------TGTTCC---ACCA-A-A-AT-TC-AG-TCGGAATTAGCTCGTTT---CAAA-ATT-G---G-GT-T-CGTA--g
gi|28 : ACTGCTTT--A--C--ATC--CT---GAAAAT-ACGTAAA-T-GCCTG--AAAATGACCTgttag
gi|26 : tACTTTCACTTCAAATA-------TGTTC----GCCTAA-A-AT-TCCAG-TCGGA-CTAGCTCG-TT---AAAACAAT-G---G-G
gi|20 : TTTCACTCAAAATACATGTA-TGTTCC--ACCC--G-ATAT-TC-AG-TCGGAACTAGCTCG-AT----AAA-AAT-GA--G-GT-G-CGGA--cgttggtgttgga
Alignments
lowQualScore : 11111111 111 111 111111 111111 1111 33333333333333333333333333333333333333333333333333333333 4444444444444444444444444444444 111111 99999999999999999999999999999999999999999999999999999999999 222222222 22222 111 33333333333333333333333 22222222222222222222 222222 111111111111111 11 1111 111
lowQualScore : 4 4 44444444 55 4 4 3 99999 88 666 4 4 3 555 3 3 3 3 4 3 3 55 3 3 0 55 4 111 1 66 1 0 444444 1 3 777777 66 66 4 33 0000 2 9999 1 3 999 22 8888 4 4 55 1 0 99999999999999999999999999999999999999999999999999999999 4 66 4 4 9999999999999999999999999999999 111111 55 55 4 77777777777777777777777777777777777777777777777777777777777 55 8888 000000000 4 8888 1 55 55 00000 55 99 222 1 99999 1 5 11 66 11111111111111111111111 4 4 66 9999 4 0 66 1 66 1 77 4 3 55555555555555555555 2 6 555 55 44 888888 44 3 2 3 3 55 3 4 2 3 3 666666666666666 666 3 55 3 3 3 3 3 2 4 0000 4 4 111 4 4 4 66
lowQualScore : . . ........ .. . . . ..... .. ... . . . ... . . . . . . . .. . . . .. . ... . .. . . ...... . . ...... .. .. . .. .... . .... . . ... .. .... . . .. . . ........................................................ . .. . . ............................... ...... .. .. . ........................................................... .. .... ......... . .... . .. .. ..... .. .. ... . ..... . . .. .. ....................... . . .. .... . . .. . .. . .. . . .................... . . ... .. .. ...... .. . . . . .. . . . . . ............... ... . .. . . . . . . . .... . . ... . . . ..
lowQualScore : 4 0 55555555 00 0 0 6 11111 66 444 0 0 6 000 6 6 6 6 5 6 6 00 6 6 5 55 0 000 0 99 0 1 111111 8 1 888888 44 99 5 55 6666 6 9999 0 6 222 11 5555 0 0 55 4 9 33333333333333333333333333333333333333333333333333333333 4 11 4 4 8888888888888888888888888888888 555555 55 55 0 33333333333333333333333333333333333333333333333333333333333 55 5555 000000000 0 5555 2 55 55 99999 55 55 555 8 66666 8 2 99 11 33333333333333333333333 4 4 11 9999 4 7 11 8 11 1 66 4 4 33333333333333333333 2 7 888 33 22 333333 66 6 1 6 6 00 6 0 4 4 3 444444444444444 999 3 88 3 3 3 3 3 3 0 2222 0 0 000 0 4 4 11
consensus : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---A--AATAATCAG-TAT--TCATTAAA----AGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGAT----GTTTTGA-C-AAAACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------G-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGTAAA--T--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGATG-TATTTGATTAA--GAACACTG----------ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTTA--C-A-C--CTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
Reference ( family-1299 ) : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCNTTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAGAANACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---A--AATAATCAG-TAT--TCATTAAA----AAANN--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGAT----GTTTTGA-C-AAAACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------G-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGTAAA--T--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGATG-TATTTGATTAA--GAACACTG----------ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTTA--C-A-C--CTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TNACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|1 : CCTCTA-GCAT-CCATTGTA--------AAAT-T-TCT-CACCG-CT-----GAAAAAG--CCAA---TTTTGATA-T-GGTTTGTT-T---CA-AGAA-CATT-GGAAGTTT-TATCCTTA-ACA-AA--TGTTTA-T-CACCAATCAAATAATCAG--TATTCA-TAAAAAAAAAAACACTTGTAAAACATAGCTATTGTGCCACACTAAGGN-----ACCAAT-C---A--AATAATCAG-TAT--TCATTAAA----AAAAAAACACCTGTAAAACATAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAATGGAATTCAGGT----GTTTTGA-C-AAAACGAAATTGA--TTCTGCCAGTA------------------------CTAT--------------AC------------A-TAT--ACA-TG-TC-------T-------G-------C-------ATAA------TTTCATAG--GT--GT-AGGAAA--------------A-G----T-------------T----------T----T-------A--A----AAA---------A-AAC----CTTCAGGTTTG--TA--TCTAAATTT--A--A--GTGGCATTATATTG-G---TTTATTCTTGTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAT--TCAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGGTG-TATTTGATT-------CACTG----------ATGCGTATGGATTAAAGTGGATTTTATTGTTT---GTCATTGACTG--CTTTA--C-A-C--CTGAATA-TGTGCAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------T-------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|10 : CCTCTA-GCAT-CCATTGTACATTGTAAAAAA-T-TCT-CGCCG-CT-----AAAAAAG--CCAA---TTTTGGTA-C-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCCTAA-ACA-AA--TGTTTA-T-CACCAATCAAATAATCAG--TATTCA-TTAAAACACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGA------ATTAAT-
gi|10 : aaCAAAGCT-TTATCCTAAACAAATGTTTATCACCAAT-C---A--AATAATCAG-TAT--TCATTAAA----ACACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGAATTAATTCATAATTTTAAAA-TCGAATTAGAC-ACAGATGACTGAGGTG---AAGGTCGTTTACTAAAATTTCtcataattttaaaatcgaattagacacagatgactgaggtgaaggtcgtttactaaaatttc
gi|11 : aacctctagcatccattgtacattgtaaaaaattctcgccgctaaaaaagccaattttggtacgggttgtttaaagaacattAATGC---A--AATAATCA--------TACTAAGGTGTACACG--CACCTTTAAAACAAAGCTATTCTGCCACACTAAGGATCAATCCATAATTTTAAAA-TCGAATTTGACTA---ATGACTGAGGTGTTCAAGGTCGTCTACTAA-------------AATTGAGAT----GTT----------------TCGA--TACTGTCAATA------------------------CTAT--------------AC------------
gi|12 : attcttcttaatcattcatcaATGAAAA-GAATTGACTGGTG----GCTTATCAA-GAAGA-G-TAT--GATTAAATGAACACTG----------ATGCAAATGGATTAAAGTGGA-TTTATTGTTT---GTCGTTGACTGTTTTTTAC-C-A-C--CCTAAAA-TATGTAT-GTTGCTTTTTAAAGTCATTTGT-TTAGTATTATTT-TCACTCAAA---------A------TGTTCCG--AA-C--A-A-AA-TC-A-GTCGAAA-TAGCTTG-TT----TAA-AAT-G---GAGT-T-AGGA--tttgctttgtgcaaggtaaaagtgattgttacataatg
gi|13 : TTTA--AACAATTATG-TGTTTGATTAAT-GCACACTG----------ATGCATATGGATCAAAGTAGA-TTTAACGTTT---TACAGTGATTG--CTGTA--C---CTTCTGAAAA-TACTTAAGG-TTC--AT-AAAGTTACTCAA-TGACTA----TT-TCATTCAAAA-------TAG-----TGTCCCG--CC-CG-A-A-AT-TT-A-TTCGGAACTACATCG-TT---AAAA-AAT-G---G-GG-TACGAA--gtta
gi|14 : CCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAA--CCAA---TTTTGATA-T-GGGTTGTG-T---AA-AGAA-CACC-CAAAGCTT-TATCCTTA-ACA-AA--TGTTTA-T-CACCATTCAAATAAACAG--TATTAATTAAAAAAACG--CACCTTTAAAACATAGCTATTATTCCACACTAAGG------ATTAAT-CCATA--AATgat
gi|15 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAG--TCAA---TTTTGATA-T-GGGTTGTT-TA--AA-AGAAGCATT-CAAAGATT-TATC-TTA-ACA-AA--T-GTTA-T-CAACAATCAAATAATCAG--TATTCA-T--TAAAACG--CACC-TTAAAACATAGCTATTATGCCACACTAAGG------ATCAAT-C------CATAATttaaaattgaa
gi|16 : aaAAC-CTG----------ATGCAAATGGATTAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--TTTTAACC-ACC--CTAAAAA-TATGT---T-TGC--TTTAAAGTCATTTGT-TTAGTA-TATTT---A-TCAAAA-------TG------TTTCCCGGAACAA--A-A-AT-TC-A-GTCGGAAATAGCTTG-TTAAAAAAA-AAT-G---G-ATGT-TGGA--ttaaaatcgaa
gi|17 : TGCAT-TGG-TTAAAGTGGAATTTATTGTT----GTCATTGACTG--CTTTA--CAA-C--CTGAAAATTGTGTCA-G-AGC--CT-AAAATCACTTGTGCCACTATTATTTGTGAT---AAA-------TAT-----TGTT-CG--AC-G--C-A-ATATC-AGGTCGG-ACTAGCTCG-TT---AGAA-AAT-GGGTG-GT-T-CGGA--gtt
gi|18 : gatGGATCAAAGTACA-TTTATTGCTT---GTTGCTGACTA--CTTTA--C-CTC--CTGAAAA-CATGTAC-G-TGC--CGGAAAATTACTTAT-TGGCTAATATTT-TCACTCAAAA-------TA------TGTTCC---AC-CA-A-A-AT-TC-A-GTCGGAATTAGCTCGTTT---CAAA-ATT-G---G-GT-T-CGTA--g
gi|19 : CTTCTAAGCATTCCATTGTC--------AAATATGTCT-CGCCGGCT-----GAAAAG---CCAA---TTTTGGTAAT-GGGTTGTT-T---AT-ATAA-CATCGCAATGCTTCTATCTTTACACA-AA--TGTATATT-CACCAAC--AATATTCGG--TATTCA-TAAAAgttag
gi|2 : gacG-CA-----GAAAAGG--CCAGCTGTTATGATA-T-GGGTTGTTAT---AA-AGAA-TATT-CAAAACTT-TATCATTA-ACA-AA--TGGTCA-T-CACCAACCAAATAATCGT--TGTTCA-TACGGAGACG--CACCTTTAAAACAAAGTTA-AATGCCACACTAGGG------AATAAT-C------CATAATc
gi|2 : t------ACCAAC-C---A--AATAATCGT-TGT--TCATACGG----AGACG--CACCTTTAAAACAAAGTTAA-ATGCCACACTAGGGAATAATCCATAATTCTAAAA-TCGAATTGGATGACAGATGATTGAAGGA---AAGGTCGTTTACTAAAATT-CAGAACCAAATTGAGAT----GTTCTGA-C-AAGACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------GCATAATAC-------GTAA------TTTTATGG--GT--GT-GAGAAA--------------G-G----T----A--------TAAA-------T----TGTAAATGA--A----AAA---------A-GAA----CCTTAGGTTAG--TA--TGTAAA--T--A--AATGTG---CCATACTG-G---TTTATTCC-TTTAAAAACAAAC--TGATGA------------TGCAATAT--TTT-TGTTTTTTTGAAAA--A-GATCTGCAAAATAA--GTAT-GACCTGGAA--------------CTGGTTAA----TTA--A------ATG-TATTTAATGCA--GGA-----------------------GGGTCAAAGTGGA------TGTTT---GTTATTGACTG--CTTTA--C-CTC--CTGAAAA-TATGTAA-G-TGC--CCGAAAATCATTTGT-TGATTATTAGAT-TTACTTAATATACATTGTA------TGTTCTG---C-CTAA-A-AT-TC-A-GTCGGAATCTGCGCG-TT---AAAA-AGTAA---G-GT-T-CGTA--TTtctaaaatcgaattggatgacagatgattgaaggaaaggtcgtttactaaaattcagaaccaaattgagatgttctgacaagacgaaattgatactgccagtactatacatatgcatgtccgcataatacgtaattttatgggtgtgagaaaggtataaattgtaaatgaaaaaagaaccttaggttagtatgtaaataaatgtgccatactggtttattcctttaaaaacaaactgatgatgcaatatttttgtttttttgaaaaagatctgcaaaataagtatgacctggaactggttaattaaatgtatttaatgcaggagggtcaaagtggatgtttgttattgactgctttacctcctgaaaatatgtaagtgcccgaaaatcatttgttgattattagatttacttaatatacattgtatgttctgcctaaaattcagtcggaatctgcgcgttaaaaagtaaggttcgtattttg
gi|20 : tgcagaaaaggccagctgttatgatatgggttgttataaagaatattcaaaactttatcattaacaaatggtcatcTT-TCACTCAAAA-------TACATGTATGTTCCA--CC-C--G-ATAT-TC-A-GTCGGAACTAGCTCG-AT----AAA-AAT-GA--G-GT-G-CGGA--ttg
gi|21 : ttaacgttttccagtggttgatttacctcttaaaaatacgcaagttcagCCTCTA-GCAT-CC-TTGTA--------AACT-G-TCT-CACTG-CT-----GACAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGGA-CAGT-CAAAGTTT-TATCATCA-ACA-AA--TGGTTA-T-CACAAATCAAATAATattaggg
gi|22 : taaCAAT-C---A--AATAATCAG-TAT--TCATTCAA----AAACC--CACCTTTAAAACATAGCTACTATGCCATATCAAGGATTAATCAATAATGTTTAAA-TCGAATTAGACAACAGATGATTGAGGTG---AAGacgtaat
gi|23 : ATGG--GT--GT-GAGAAG--------------G-GCATAT----A--------T----------TA---T-------A--A----ATA---------A-AAA----GGTTAGGTTAT--TA--TGTAAA--T--A--A--ATGTT-TCCTACTG-G---TTTATTCCTTTC--AAACGAAC--CGATGA------------T----T-----TT-CG-TTATCTTAAA
gi|24 : TG---AAGGCCGTATACTAAAATTTCGGAATAGAATCCAGGT----GTTTTCA-C-AAAACGAAATTGG--TTCTGCCACTA------------------------TAAT--------------AC------------A-TAT--ACA-TG-TC-------T-------G-------C-------ATAA------T
gi|25 : aGTTATC-TTA-AA-AGAA-AATT-CAAAGGTT-TGTCATTT-TCA-AA--TGGTTA-T-CACCAATTAAATAATCGT--TATTTA-TTAAAAAGTC--CACCTTTAGAAa
gi|26 : ACTT-TCACTTCAAA-------TA------TGTTC----GC-CTAA-A-AT-TCCA-GTCGGA-CTAGCTCG-TT---AAAACAAT-G---G-Gaag
gi|27 : CCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-TGCCG-CT-----GAAAAGGCTCCAA---CTTcgttggtgttgga
gi|28 : aaACTG--CTTTA--C-ATC--CTGAAAA-TACGTAA-A-TGC--CTGAAAATGACCTg
gi|3 : t-CCATTTTA--------AAAT-T-TCTTCGCCG-CT-----GAAAAGGA-CCTA---TTTTGATA-TCGGGTTATT-TTTAAATAGAA-CTTT-CAAAGCTT-TATCATTA-GCACAACTTGGTTA-TACACCAATCAAATAATCAA--TATTCA-
gi|3 : AATTTTAAGA-ACGAAT-GGAAAACAGATGATTGAGATGG--AAGGTCTTTTATTAAAATTTTGAACCGGCATTGAGATTGTTATTTTGAAC-AAAAAGAAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGT--------------AC------------ACTAT--GCAGTA-TC-------C-------GATAATA-C-------GTAACTGTGATTTTATGG--GTTTGT-AAAAAATAATGAATTACTTCA-G----TC---A--------T----------T----T-------ACGA----AAA---------ACGAA----CTTTAGGATTG--TGATTGTAAA--T--A--AA-GTG---TTATACTG-A---TT-ATTTCCTT-CAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCG-TTTTCTTGAAACCACGATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACG--CTGATTAAATGTTTA--AACAAT--TGATATGTAATTGA--AGATAATGAGGCATGTCAATGCATATGAAT--AAATGGA-CC--TTGTTCAGAGCC-TTGA-TG----TTA--CTC-C--CTGAActgaaatatttttttaaattttaagaacgaatggaaaacagatgattgagatggaaggtcttttattaaaattttgaaccggcattgagattgttattttgaacaaaaagaaattggagtactgccagtactataccgatatagcatgtaacaactgtacactatgcagtatccgataatacgtaactgtgattttatgggtttgtaaaaaataatgaattacttcagtcatttacgaaaaacgaactttaggattgtgattgtaaataaagtgttatactgattatttccttcaaaacgaaccttaatgagtcctctgtggatgctatgttaatttcgttttcttgaaaccacgatctgcaaaaaaaatctattgacgtgaaataaaaacaaacgctgattaaatgtttaaacaattgatatgtaattgaagataatgaggcatgtcaatgcatatgaataaatggaccttgttcagagccttgatgttactccctgaag
gi|4 : ccattttaaaatttcttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatatttttttaCCTTTA-CCAT-TCATTGTA--------CCAT-C-TCT-CGCCG-CT-----GGAAAGG--CCAA---TTTGGGAA-T-GGGTTGTT-C---AA-AGAA-TATT-CAAAGTTT-TGGCATTA-ACG-AA--TGGTCA-T-CAACAATCAAATACT----------------AAGACG--CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGG------ATTAGT-C------------TAG-AAT--T--TTAAA----AAg
gi|4 : aCATTAACG------AATGGT-C---ATCAACAATCAAATAC--T------A----AGACG--CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGGATTAGTCTAGAATTTTAAAAATCGAATTGAACAACA--TAATTG-----------GTCGTCAACTAAAATTTCGGAACAGAATTGAGAT----GTTTCAA-CGAAAATGAAATCGA--TACCGTCTGTA------------------------CTGT--------------ACTTGCTTAGTGCAA-TGTAGGCA-TA-TCAGTATAAC-------A-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----TAGAAA--------T----------TA---T-------A--A----AAATAAATTACGA-AAATTTTTTTTAGGTTGGATTA--TA-AAA--T--ATCA--ATG---TCtcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|4 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggCCGAAAA--ACGATCCGCAAAATAA--CAAT-GACATGAAATTAAAACAAATT--ATGATTAAATGTTtaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|5 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggcattaacgaatggtcatcaacaatcaaatactaagacgcacctttaaaataaagctattctgccacagtaaggattagtctagaattttaaaaatcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaCTGTTATGCCACACTAAGAATTAATTCATAATTTTAAAA-TCGAATTAGACA-CAGATGACTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAATGAAATGCAGGT----ATTTTGA-C-AAAACGAAATTGA--TTCTGCCCGTA------------------------CTAT--------------AC------------G-TCC--GCA-TAAT----------------A-------C-------GTAA------TTTCATGGTTGT--AT-GAGAAG--------------T-G----T----AAATTATAAT----------T----T-------A--A----AAA---------T-GAA----CTTCAGGTTTG--TA--TGTAAAATT--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CA-TTTTCGGAAAA--ACGATCTGCAAAATAT--CTAG-GACGTGAAATAAAAACAAATT--CAGG--------TTA--AACAA---------TTGAT-------------------------GCATATGGATTAATGTGGA-TTTATTGTTT---GTCAATGACTG--CTTTAT-C-A-C--CTGAAAA-TGTACAA-T-TGC--CTGAAAATTACTTGT-GTACTATTATTT-TCACTCAAAA-------TA------TGTTTCG--AC-C--A-A-AT-TC-A-GTCGGAATTAGCTCG-TT---AAAA-ATG-G---G-GT-T-CGGATGTTAGAaa
gi|6 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-GGCCA-ATTTAATGAAAAGG--CCAA---TTTTAATA-T-TGGTTGAT-T---AA-AGAA-CATT-CAAAGCTG-TATCAATA-ACA-GA--TGGTCA-T-CACCAATCAAATAAT-GGTATATTCG-TACGAAGATG--CACCTTTAAATCAAAACTAGTCTGCTACACTAAGG------ATTAAT-C------CATAATg
gi|6 : a------ACCAAT-C---A--AATAAT-GG-TATATTCGTACGA----AGATG--CACCTTTAAATCAAAACTAGTCTGCTACACTAAGGATTAATCCATAATTTGAAAA-TTAAATTTCACAACAGATTATTGCGGTG---AAGGTCGCTTGCTAAAATTTCTGAACGGAATTGAAAT----GTTTTGA-C-AAAACGAATTTGA--TACTTGCAGTA------------------------ATATATTTGCCTTGGAAAAC------------A-TGT--GCT-TG-TC-------CACATAATA-------C-------GTAA------TTTTATTG--GT--GT-GAGAAA--------------G-G----T----A--------TAGATAATAAAT----G-------A--A----AAA---------A-GAA----CTTTAGGTTAG--CA--TGTAAA--TAAA--A--GTG---TCATACTATGTATTTTATTCA-TTTCAACACGAAC--AGAGGA------------TGAAAAAC--TTT-TG-TTTTCTGAAAA--ACAATCTGCAAAATAA--TTAT-GACGTGAAATAAAAATAttgaaaattaaatttcacaacagattattgcggtgaaggtcgcttgctaaaatttctgaacggaattgaaatgttttgacaaaacgaatttgatacttgcagtaatatatttgccttggaaaacatgtgcttgtccacataatacgtaattttattggtgtgagaaaggtatagataataaatgaaaaaagaactttaggttagcatgtaaataaaagtgtcatactatgtattttattcatttcaacacgaacagaggatgaaaaacttttgttttctgaaaaacaatctgcaaaataattatgacgtgaaataaaaata
gi|7 : acctctagcatccattgtaaaaattctggccaatttaatgaaaaggccaattttaatattggttgattaaagaacattcaaagctgtatcaataacagatggtcatcAAA-TCAAATTGGACAAAAGATGATTGAGGTG---AAGGTCGTTTACTAAAAT--------------AAGGT----GTTTTGA-C-AAAACGAAATTGA--ATCTGCC-TTA------------------------TTAT--------------AC------------A-TAT--GAA-TG-TC-------C-------G-------CATAATACGTAA------TTCCATGG--GT--GTAGAAAAA--------------GTG----T----AAA------T----------TATAAT-------A--A----AAAT--------A-GAA----CTTCAGGTTTG--TA------AA--TTAA--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAG--TTAT-GATGTGAAATAATAACAAATT--CCGATTAAATGTTTA--AACGATGATG-TATTTGATTAAT-GAACACTG----------ATGAATATGGATTAAA------------ATTT---GTCA-TGACTG--CTTTA--C-C-C--CTGAAAA-TGTGT-A-G-TGC--CTGAAA----------TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--AGA-AT-TC-A-GTCGAAA
gi|8 : CTATTATGCCACACTAAGAATTGATCCATAAATATAAAA-TCGAATTGGAAAACAGATGTTTGAGAT----ATGGTCTTTTA-TCAATTTTTGGAATGGCATTGAGAT----ATTTTGA-C-AAAACGAAATTCA--TAATGCCAGTA------------------------CTGT--------------AC------------A-TTT--GCA-TA-TC-------C-------A-------C-------ATAA------T--------------------------------------G----C----A--------T-----------------------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGT--------A--A--ATG---T------------------CCT-----------AC--TGGTG--------------------T--ATT-TA-TTTT---AAAA--ACGAACTGCAAAA------------------------ACA--TT--CTGGATAAATGTTTA--AAAGACGATG-TATTTGATTAAA-GAACACCG----------ATGCTCATGGATCAAAGTGGA-TTTATTGTTT---GTCATTGACTG--ATTTA--C-tggggttaggatgttagaa
gi|9 : -------C-------GTAA------TTTCATGG--GT--TT-GAGAAA--------------G-T----T----A--------CAAATTA----T----T-------A--ATAAAAAA---------A-GAA----CTTTAGATTTG--TA--TGTAAA--TCAA--A--GAG---TC-------------------CTTTCAAAACAAAC--TAATGA------------T------T---TT-TG-TTTTCTGAAAA--ACGATTAGCAAAATAA--TTAT-GACATGAAATAAAAATAAACT--CTGGTTAAATGTATA--AACGATGATG-TATTTGATTAAT-GAACACTG----------ATCCATATGGATCAACGTGGA-TTTATTGTTT---GTCATTGACTC--TTTTA--C-CTC--CTTAAAT-TATATAA-G-TGT--CTGAAAATC---------ACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--CC-T--A-A-AT-TC-A-GTCc
Alignments
lowQualScore : 11111111 111 1 111111 111111 11111 11111 33333333333333333333333333333333333333333333333333333333 4444444444444444444444444444444 111111 99999999999999999999999999999999999999999999999999999999999 222222222 22222 111 33333333333333333333333 22222222222222222222 222222 111111111111111 11 1111 111
lowQualScore : 4 4 44444444 55 4 4 3 99999 88 666 4 4 3 555 3 3 3 3 4 3 3 55 3 3 0 55 2 0 0 66 1 0 444444 1 3 555555 88 77 55555 44444 77 1 3 999 22 8888 4 4 55 1 0 99999999999999999999999999999999999999999999999999999999 4 66 4 4 9999999999999999999999999999999 111111 55 55 4 77777777777777777777777777777777777777777777777777777777777 55 8888 000000000 4 8888 1 55 55 00000 55 99 222 1 99999 1 5 11 66 11111111111111111111111 4 4 66 9999 4 0 66 1 66 1 77 4 3 55555555555555555555 2 6 555 55 44 888888 44 3 2 3 3 55 3 4 2 3 3 666666666666666 666 3 55 3 3 3 3 3 2 4 0000 4 4 111 4 4 4 66
lowQualScore : . . ........ .. . . . ..... .. ... . . . ... . . . . . . . .. . . . .. . . . .. . . ...... . . ...... .. .. ..... ..... .. . . ... .. .... . . .. . . ........................................................ . .. . . ............................... ...... .. .. . ........................................................... .. .... ......... . .... . .. .. ..... .. .. ... . ..... . . .. .. ....................... . . .. .... . . .. . .. . .. . . .................... . . ... .. .. ...... .. . . . . .. . . . . . ............... ... . .. . . . . . . . .... . . ... . . . ..
lowQualScore : 4 0 55555555 00 0 0 6 11111 66 444 0 0 6 000 6 6 6 6 4 6 6 00 6 6 5 55 0 1 2 99 0 1 111111 8 1 222222 77 99 66666 33333 99 0 6 222 11 5555 0 0 55 4 9 33333333333333333333333333333333333333333333333333333333 4 11 4 4 8888888888888888888888888888888 555555 55 55 0 33333333333333333333333333333333333333333333333333333333333 55 5555 000000000 0 5555 2 55 55 99999 55 55 555 8 66666 8 2 99 11 33333333333333333333333 4 4 11 9999 4 7 11 8 11 1 66 4 4 33333333333333333333 2 7 888 33 22 333333 66 6 1 6 6 00 6 0 1 4 3 444444444444444 999 3 88 3 3 3 3 3 3 0 2222 0 0 000 0 4 4 11
consensus : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---A--AATAATCGG-TAT--TCATTCGAAG-----ACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGAT----GTTTTGA-C-AAAACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------G-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGTAAA--T--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGATG-TATTTGATTAA--GAACACTG----------ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTTA--C-A-C--CTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
Reference ( family-1299 ) : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---A--AATAATCAG-TAT--TCATTAAAAG-----ACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGAT----GTTTTGA-C-AAAACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------G-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGTAAA--T--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGATG-TATTTGATTAA--GAACACTG----------ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTTA--C-A-C--CTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|1 : CCTCTA-GCAT-CCATTGTA--------AAAT-T-TCT-CACCG-CT-----GAAAAAG--CCAA---TTTTGATA-T-GGTTTGTT-T---CA-AGAA-CATT-GGAAGTTT-TATCCTTA-ACA-AA--TGTTTA-T-CACCAATCAAATAATCAG--TATTCA-TAAAAAAAAAAACACTTGTAAAACATAGCTATTGTGCCACACTAAGGN-----ACCAAT-C---A--AATAATCAG-TAT--TCATTAAAAA-----AAAAACACCTGTAAAACATAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAATGGAATTCAGGT----GTTTTGA-C-AAAACGAAATTGA--TTCTGCCAGTA------------------------CTAT--------------AC------------A-TAT--ACA-TG-TC-------T-------G-------C-------ATAA------TTTCATAG--GT--GT-AGGAAA--------------A-G----T-------------T----------T----T-------A--A----AAA---------A-AAC----CTTCAGGTTTG--TA--TCTAAATTT--A--A--GTGGCATTATATTG-G---TTTATTCTTGTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAT--TCAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGGTG-TATTTGATT-------CACTG----------ATGCGTATGGATTAAAGTGGATTTTATTGTTT---GTCATTGACTG--CTTTA--C-A-C--CTGAATA-TGTGCAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------T-------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|10 : CCTCTA-GCAT-CCATTGTACATTGTAAAAAA-T-TCT-CGCCG-CT-----AAAAAAG--CCAA---TTTTGGTA-C-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCCTAA-ACA-AA--TGTTTA-T-CACCAATCAAATAATCAG--TATTCA-TTAAAACACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGA------ATTAAT-
gi|10 : aaCAAAGCT-TTATCCTAAACAAATGTTTATCACCAAT-C---A--AATAATCAG-TAT--TCATTAAAAC-----ACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGAATTAATTCATAATTTTAAAA-TCGAATTAGAC-ACAGATGACTGAGGTG---AAGGTCGTTTACTAAAATTTCtcataattttaaaatcgaattagacacagatgactgaggtgaaggtcgtttactaaaatttc
gi|11 : aacctctagcatccattgtacattgtaaaaaattctcgccgctaaaaaagccaattttggtacgggttgtttaaagaacattAATGC---A--AATAATCA--TAC--T-----AAGGTGTACACG--CACCTTTAAAACAAAGCTATTCTGCCACACTAAGGATCAATCCATAATTTTAAAA-TCGAATTTGACTA---ATGACTGAGGTGTTCAAGGTCGTCTACTAA-------------AATTGAGAT----GTT----------------TCGA--TACTGTCAATA------------------------CTAT--------------AC------------
gi|12 : attcttcttaatcattcatcaATGAAAA-GAATTGACTGGTG----GCTTATCAA-GAAGA-G-TAT--GATTAAATGAACACTG----------ATGCAAATGGATTAAAGTGGA-TTTATTGTTT---GTCGTTGACTGTTTTTTAC-C-A-C--CCTAAAA-TATGTAT-GTTGCTTTTTAAAGTCATTTGT-TTAGTATTATTT-TCACTCAAA---------A------TGTTCCG--AA-C--A-A-AA-TC-A-GTCGAAA-TAGCTTG-TT----TAA-AAT-G---GAGT-T-AGGA--tttgctttgtgcaaggtaaaagtgattgttacataatg
gi|13 : TTTA--AACAATTATG-TGTTTGATTAAT-GCACACTG----------ATGCATATGGATCAAAGTAGA-TTTAACGTTT---TACAGTGATTG--CTGTA--C---CTTCTGAAAA-TACTTAAGG-TTC--AT-AAAGTTACTCAA-TGACTA----TT-TCATTCAAAA-------TAG-----TGTCCCG--CC-CG-A-A-AT-TT-A-TTCGGAACTACATCG-TT---AAAA-AAT-G---G-GG-TACGAA--gtta
gi|14 : CCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAA--CCAA---TTTTGATA-T-GGGTTGTG-T---AA-AGAA-CACC-CAAAGCTT-TATCCTTA-ACA-AA--TGTTTA-T-CACCATTCAAATAAACAG--TATTAATTAAAAAAACG--CACCTTTAAAACATAGCTATTATTCCACACTAAGG------ATTAAT-CCATA--AATgat
gi|15 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAG--TCAA---TTTTGATA-T-GGGTTGTT-TA--AA-AGAAGCATT-CAAAGATT-TATC-TTA-ACA-AA--T-GTTA-T-CAACAATCAAATAATCAG--TATTCA-TTAAA--ACG--CACC-TTAAAACATAGCTATTATGCCACACTAAGG------ATCAAT-C------CATAATttaaaattgaa
gi|16 : aaAAC-CTG----------ATGCAAATGGATTAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--TTTTAACC-ACC--CTAAAAA-TATGT---T-TGC--TTTAAAGTCATTTGT-TTAGTA-TATTT---A-TCAAAA-------TG------TTTCCCGGAACAA--A-A-AT-TC-A-GTCGGAAATAGCTTG-TTAAAAAAA-AAT-G---G-ATGT-TGGA--ttaaaatcgaa
gi|17 : TGCAT-TGG-TTAAAGTGGAATTTATTGTT----GTCATTGACTG--CTTTA--CAA-C--CTGAAAATTGTGTCA-G-AGC--CT-AAAATCACTTGTGCCACTATTATTTGTGAT---AAA-------TAT-----TGTT-CG--AC-G--C-A-ATATC-AGGTCGG-ACTAGCTCG-TT---AGAA-AAT-GGGTG-GT-T-CGGA--gtt
gi|18 : gatGGATCAAAGTACA-TTTATTGCTT---GTTGCTGACTA--CTTTA--C-CTC--CTGAAAA-CATGTAC-G-TGC--CGGAAAATTACTTAT-TGGCTAATATTT-TCACTCAAAA-------TA------TGTTCC---AC-CA-A-A-AT-TC-A-GTCGGAATTAGCTCGTTT---CAAA-ATT-G---G-GT-T-CGTA--g
gi|19 : CTTCTAAGCATTCCATTGTC--------AAATATGTCT-CGCCGGCT-----GAAAAG---CCAA---TTTTGGTAAT-GGGTTGTT-T---AT-ATAA-CATCGCAATGCTTCTATCTTTACACA-AA--TGTATATT-CACCAAC--AATATTCGG--TATTCA-TAAAAgttag
gi|2 : gacG-CA-----GAAAAGG--CCAGCTGTTATGATA-T-GGGTTGTTAT---AA-AGAA-TATT-CAAAACTT-TATCATTA-ACA-AA--TGGTCA-T-CACCAACCAAATAATCGT--TGTTCA-TACGGAGACG--CACCTTTAAAACAAAGTTA-AATGCCACACTAGGG------AATAAT-C------CATAATc
gi|2 : t------ACCAAC-C---A--AATAATCGT-TGT--TCATACGGAG-----ACG--CACCTTTAAAACAAAGTTAA-ATGCCACACTAGGGAATAATCCATAATTCTAAAA-TCGAATTGGATGACAGATGATTGAAGGA---AAGGTCGTTTACTAAAATT-CAGAACCAAATTGAGAT----GTTCTGA-C-AAGACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------GCATAATAC-------GTAA------TTTTATGG--GT--GT-GAGAAA--------------G-G----T----A--------TAAA-------T----TGTAAATGA--A----AAA---------A-GAA----CCTTAGGTTAG--TA--TGTAAA--T--A--AATGTG---CCATACTG-G---TTTATTCC-TTTAAAAACAAAC--TGATGA------------TGCAATAT--TTT-TGTTTTTTTGAAAA--A-GATCTGCAAAATAA--GTAT-GACCTGGAA--------------CTGGTTAA----TTA--A------ATG-TATTTAATGCA--GGA-----------------------GGGTCAAAGTGGA------TGTTT---GTTATTGACTG--CTTTA--C-CTC--CTGAAAA-TATGTAA-G-TGC--CCGAAAATCATTTGT-TGATTATTAGAT-TTACTTAATATACATTGTA------TGTTCTG---C-CTAA-A-AT-TC-A-GTCGGAATCTGCGCG-TT---AAAA-AGTAA---G-GT-T-CGTA--TTtctaaaatcgaattggatgacagatgattgaaggaaaggtcgtttactaaaattcagaaccaaattgagatgttctgacaagacgaaattgatactgccagtactatacatatgcatgtccgcataatacgtaattttatgggtgtgagaaaggtataaattgtaaatgaaaaaagaaccttaggttagtatgtaaataaatgtgccatactggtttattcctttaaaaacaaactgatgatgcaatatttttgtttttttgaaaaagatctgcaaaataagtatgacctggaactggttaattaaatgtatttaatgcaggagggtcaaagtggatgtttgttattgactgctttacctcctgaaaatatgtaagtgcccgaaaatcatttgttgattattagatttacttaatatacattgtatgttctgcctaaaattcagtcggaatctgcgcgttaaaaagtaaggttcgtattttg
gi|20 : tgcagaaaaggccagctgttatgatatgggttgttataaagaatattcaaaactttatcattaacaaatggtcatcTT-TCACTCAAAA-------TACATGTATGTTCCA--CC-C--G-ATAT-TC-A-GTCGGAACTAGCTCG-AT----AAA-AAT-GA--G-GT-G-CGGA--ttg
gi|21 : ttaacgttttccagtggttgatttacctcttaaaaatacgcaagttcagCCTCTA-GCAT-CC-TTGTA--------AACT-G-TCT-CACTG-CT-----GACAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGGA-CAGT-CAAAGTTT-TATCATCA-ACA-AA--TGGTTA-T-CACAAATCAAATAATattaggg
gi|22 : taaCAAT-C---A--AATAATCAG-TAT--TCATTCAAAA-----ACC--CACCTTTAAAACATAGCTACTATGCCATATCAAGGATTAATCAATAATGTTTAAA-TCGAATTAGACAACAGATGATTGAGGTG---AAGacgtaat
gi|23 : ATGG--GT--GT-GAGAAG--------------G-GCATAT----A--------T----------TA---T-------A--A----ATA---------A-AAA----GGTTAGGTTAT--TA--TGTAAA--T--A--A--ATGTT-TCCTACTG-G---TTTATTCCTTTC--AAACGAAC--CGATGA------------T----T-----TT-CG-TTATCTTAAA
gi|24 : TG---AAGGCCGTATACTAAAATTTCGGAATAGAATCCAGGT----GTTTTCA-C-AAAACGAAATTGG--TTCTGCCACTA------------------------TAAT--------------AC------------A-TAT--ACA-TG-TC-------T-------G-------C-------ATAA------T
gi|25 : aGTTATC-TTA-AA-AGAA-AATT-CAAAGGTT-TGTCATTT-TCA-AA--TGGTTA-T-CACCAATTAAATAATCGT--TATTTATTAAAAAGTC---CACCTTTAGAAa
gi|26 : ACTT-TCACTTCAAA-------TA------TGTTC----GC-CTAA-A-AT-TCCA-GTCGGA-CTAGCTCG-TT---AAAACAAT-G---G-Gaag
gi|27 : CCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-TGCCG-CT-----GAAAAGGCTCCAA---CTTcgttggtgttgga
gi|28 : aaACTG--CTTTA--C-ATC--CTGAAAA-TACGTAA-A-TGC--CTGAAAATGACCTg
gi|3 : t-CCATTTTA--------AAAT-T-TCTTCGCCG-CT-----GAAAAGGA-CCTA---TTTTGATA-TCGGGTTATT-TTTAAATAGAA-CTTT-CAAAGCTT-TATCATTA-GCACAACTTGGTTA-TACACCAATCAAATAATCAA--TATTCACTGAAA
gi|3 : AATTTTAAGA-ACGAAT-GGAAAACAGATGATTGAGATGG--AAGGTCTTTTATTAAAATTTTGAACCGGCATTGAGATTGTTATTTTGAAC-AAAAAGAAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGT--------------AC------------ACTAT--GCAGTA-TC-------C-------GATAATA-C-------GTAACTGTGATTTTATGG--GTTTGT-AAAAAATAATGAATTACTTCA-G----TC---A--------T----------T----T-------ACGA----AAA---------ACGAA----CTTTAGGATTG--TGATTGTAAA--T--A--AA-GTG---TTATACTG-A---TT-ATTTCCTT-CAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCG-TTTTCTTGAAACCACGATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACG--CTGATTAAATGTTTA--AACAAT--TGATATGTAATTGA--AGATAATGAGGCATGTCAATGCATATGAAT--AAATGGA-CC--TTGTTCAGAGCC-TTGA-TG----TTA--CTC-C--CTGAAtatttttttaaattttaagaacgaatggaaaacagatgattgagatggaaggtcttttattaaaattttgaaccggcattgagattgttattttgaacaaaaagaaattggagtactgccagtactataccgatatagcatgtaacaactgtacactatgcagtatccgataatacgtaactgtgattttatgggtttgtaaaaaataatgaattacttcagtcatttacgaaaaacgaactttaggattgtgattgtaaataaagtgttatactgattatttccttcaaaacgaaccttaatgagtcctctgtggatgctatgttaatttcgttttcttgaaaccacgatctgcaaaaaaaatctattgacgtgaaataaaaacaaacgctgattaaatgtttaaacaattgatatgtaattgaagataatgaggcatgtcaatgcatatgaataaatggaccttgttcagagccttgatgttactccctgaag
gi|4 : ccattttaaaatttcttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatatttttttaCCTTTA-CCAT-TCATTGTA--------CCAT-C-TCT-CGCCG-CT-----GGAAAGG--CCAA---TTTGGGAA-T-GGGTTGTT-C---AA-AGAA-TATT-CAAAGTTT-TGGCATTA-ACG-AA--TGGTCA-T-CAACAATCAAATACT----------------AAGACG--CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGG------ATTAGT-C---g
gi|4 : aCATTAACG------AATGGT-C---ATCAACAATCAAATAC--T------AAG-----ACG--CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGGATTAGTCTAGAATTTTAAAAATCGAATTGAACAACA--TAATTG-----------GTCGTCAACTAAAATTTCGGAACAGAATTGAGAT----GTTTCAA-CGAAAATGAAATCGA--TACCGTCTGTA------------------------CTGT--------------ACTTGCTTAGTGCAA-TGTAGGCA-TA-TCAGTATAAC-------A-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----TAGAAA--------T----------TA---T-------A--A----AAATAAATTACGA-AAATTTTTTTTAGGTTGGATTA--TA-AAA--T--ATCA--ATG---TCtagaattttaaaaatcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|4 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggCCGAAAA--ACGATCCGCAAAATAA--CAAT-GACATGAAATTAAAACAAATT--ATGATTAAATGTTtaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|5 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggcattaacgaatggtcatcaacaatcaaatactaagacgcacctttaaaataaagctattctgccacagtaaggattagtctagaattttaaaaatcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaCTGTTATGCCACACTAAGAATTAATTCATAATTTTAAAA-TCGAATTAGACA-CAGATGACTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAATGAAATGCAGGT----ATTTTGA-C-AAAACGAAATTGA--TTCTGCCCGTA------------------------CTAT--------------AC------------G-TCC--GCA-TAAT----------------A-------C-------GTAA------TTTCATGGTTGT--AT-GAGAAG--------------T-G----T----AAATTATAAT----------T----T-------A--A----AAA---------T-GAA----CTTCAGGTTTG--TA--TGTAAAATT--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CA-TTTTCGGAAAA--ACGATCTGCAAAATAT--CTAG-GACGTGAAATAAAAACAAATT--CAGG--------TTA--AACAA---------TTGAT-------------------------GCATATGGATTAATGTGGA-TTTATTGTTT---GTCAATGACTG--CTTTAT-C-A-C--CTGAAAA-TGTACAA-T-TGC--CTGAAAATTACTTGT-GTACTATTATTT-TCACTCAAAA-------TA------TGTTTCG--AC-C--A-A-AT-TC-A-GTCGGAATTAGCTCG-TT---AAAA-ATG-G---G-GT-T-CGGATGTTAGAaa
gi|6 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-GGCCA-ATTTAATGAAAAGG--CCAA---TTTTAATA-T-TGGTTGAT-T---AA-AGAA-CATT-CAAAGCTG-TATCAATA-ACA-GA--TGGTCA-T-CACCAATCAAATAAT-GGTATATTCG-TACGAAGATG--CACCTTTAAATCAAAACTAGTCTGCTACACTAAGG------ATTAAT-C------CATAATg
gi|6 : a------ACCAAT-C---A--AATAAT-GG-TATATTCGTACGAAG-----ATG--CACCTTTAAATCAAAACTAGTCTGCTACACTAAGGATTAATCCATAATTTGAAAA-TTAAATTTCACAACAGATTATTGCGGTG---AAGGTCGCTTGCTAAAATTTCTGAACGGAATTGAAAT----GTTTTGA-C-AAAACGAATTTGA--TACTTGCAGTA------------------------ATATATTTGCCTTGGAAAAC------------A-TGT--GCT-TG-TC-------CACATAATA-------C-------GTAA------TTTTATTG--GT--GT-GAGAAA--------------G-G----T----A--------TAGATAATAAAT----G-------A--A----AAA---------A-GAA----CTTTAGGTTAG--CA--TGTAAA--TAAA--A--GTG---TCATACTATGTATTTTATTCA-TTTCAACACGAAC--AGAGGA------------TGAAAAAC--TTT-TG-TTTTCTGAAAA--ACAATCTGCAAAATAA--TTAT-GACGTGAAATAAAAATAttgaaaattaaatttcacaacagattattgcggtgaaggtcgcttgctaaaatttctgaacggaattgaaatgttttgacaaaacgaatttgatacttgcagtaatatatttgccttggaaaacatgtgcttgtccacataatacgtaattttattggtgtgagaaaggtatagataataaatgaaaaaagaactttaggttagcatgtaaataaaagtgtcatactatgtattttattcatttcaacacgaacagaggatgaaaaacttttgttttctgaaaaacaatctgcaaaataattatgacgtgaaataaaaata
gi|7 : acctctagcatccattgtaaaaattctggccaatttaatgaaaaggccaattttaatattggttgattaaagaacattcaaagctgtatcaataacagatggtcatcAAA-TCAAATTGGACAAAAGATGATTGAGGTG---AAGGTCGTTTACTAAAAT--------------AAGGT----GTTTTGA-C-AAAACGAAATTGA--ATCTGCC-TTA------------------------TTAT--------------AC------------A-TAT--GAA-TG-TC-------C-------G-------CATAATACGTAA------TTCCATGG--GT--GTAGAAAAA--------------GTG----T----AAA------T----------TATAAT-------A--A----AAAT--------A-GAA----CTTCAGGTTTG--TA------AA--TTAA--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAG--TTAT-GATGTGAAATAATAACAAATT--CCGATTAAATGTTTA--AACGATGATG-TATTTGATTAAT-GAACACTG----------ATGAATATGGATTAAA------------ATTT---GTCA-TGACTG--CTTTA--C-C-C--CTGAAAA-TGTGT-A-G-TGC--CTGAAA----------TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--AGA-AT-TC-A-GTCGAAA
gi|8 : CTATTATGCCACACTAAGAATTGATCCATAAATATAAAA-TCGAATTGGAAAACAGATGTTTGAGAT----ATGGTCTTTTA-TCAATTTTTGGAATGGCATTGAGAT----ATTTTGA-C-AAAACGAAATTCA--TAATGCCAGTA------------------------CTGT--------------AC------------A-TTT--GCA-TA-TC-------C-------A-------C-------ATAA------T--------------------------------------G----C----A--------T-----------------------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGT--------A--A--ATG---T------------------CCT-----------AC--TGGTG--------------------T--ATT-TA-TTTT---AAAA--ACGAACTGCAAAA------------------------ACA--TT--CTGGATAAATGTTTA--AAAGACGATG-TATTTGATTAAA-GAACACCG----------ATGCTCATGGATCAAAGTGGA-TTTATTGTTT---GTCATTGACTG--ATTTA--C-tggggttaggatgttagaa
gi|9 : -------C-------GTAA------TTTCATGG--GT--TT-GAGAAA--------------G-T----T----A--------CAAATTA----T----T-------A--ATAAAAAA---------A-GAA----CTTTAGATTTG--TA--TGTAAA--TCAA--A--GAG---TC-------------------CTTTCAAAACAAAC--TAATGA------------T------T---TT-TG-TTTTCTGAAAA--ACGATTAGCAAAATAA--TTAT-GACATGAAATAAAAATAAACT--CTGGTTAAATGTATA--AACGATGATG-TATTTGATTAAT-GAACACTG----------ATCCATATGGATCAACGTGGA-TTTATTGTTT---GTCATTGACTC--TTTTA--C-CTC--CTTAAAT-TATATAA-G-TGT--CTGAAAATC---------ACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--CC-T--A-A-AT-TC-A-GTCc
Alignments
lowQualScore : 11111111 111 1 111111 1111 33333333333333333333333333333333333333333333333333333333 4444444444444444444444444444444 111111 99999999999999999999999999999999999999999999999999999999999 222222222 22222 111 33333333333333333333333 22222222222222222222 222222 111111111111111 11 1111 111
lowQualScore : 4 4 44444444 55 4 4 3 99999 88 666 4 4 3 555 3 3 3 3 4 3 3 55 3 3 0 55 2 0 0 66 1 0 555555 0 3 0000 777 77 5 0 1 77 1 3 999 22 8888 4 4 55 1 0 99999999999999999999999999999999999999999999999999999999 4 66 4 4 9999999999999999999999999999999 111111 55 55 4 77777777777777777777777777777777777777777777777777777777777 55 8888 000000000 4 8888 1 55 55 00000 55 99 222 1 99999 1 5 11 66 11111111111111111111111 4 4 66 9999 4 0 66 1 66 1 77 4 3 55555555555555555555 2 6 555 55 44 888888 44 3 2 3 3 55 3 4 2 3 3 666666666666666 666 3 55 3 3 3 3 3 2 4 0000 4 4 111 4 4 4 66
lowQualScore : . . ........ .. . . . ..... .. ... . . . ... . . . . . . . .. . . . .. . . . .. . . ...... . . .... ... .. . . . .. . . ... .. .... . . .. . . ........................................................ . .. . . ............................... ...... .. .. . ........................................................... .. .... ......... . .... . .. .. ..... .. .. ... . ..... . . .. .. ....................... . . .. .... . . .. . .. . .. . . .................... . . ... .. .. ...... .. . . . . .. . . . . . ............... ... . .. . . . . . . . .... . . ... . . . ..
lowQualScore : 4 0 55555555 00 0 0 6 11111 66 444 0 0 6 000 6 6 6 6 4 6 6 00 6 6 5 55 0 1 2 99 0 1 555555 5 1 2222 777 99 3 4 7 99 0 6 222 11 5555 0 0 55 4 9 33333333333333333333333333333333333333333333333333333333 4 11 4 4 8888888888888888888888888888888 555555 55 55 0 33333333333333333333333333333333333333333333333333333333333 55 5555 000000000 0 5555 2 55 55 99999 55 55 555 8 66666 8 2 99 11 33333333333333333333333 4 4 11 9999 4 7 11 8 11 1 66 4 4 33333333333333333333 2 7 888 33 22 333333 66 6 1 6 6 00 6 0 1 4 3 444444444444444 999 3 88 3 3 3 3 3 3 0 2222 0 0 000 0 4 4 11
consensus : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---AAATAATCGGTAT--TCATNCGAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGAT----GTTTTGA-C-AAAACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------G-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGTAAA--T--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGATG-TATTTGATTAA--GAACACTG----------ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTTA--C-A-C--CTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
Reference ( family-1299 ) : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---AAATAATCGGTAT--TCATTCGAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGAT----GTTTTGA-C-AAAACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------G-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGTAAA--T--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGATG-TATTTGATTAA--GAACACTG----------ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTTA--C-A-C--CTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|1 : CCTCTA-GCAT-CCATTGTA--------AAAT-T-TCT-CACCG-CT-----GAAAAAG--CCAA---TTTTGATA-T-GGTTTGTT-T---CA-AGAA-CATT-GGAAGTTT-TATCCTTA-ACA-AA--TGTTTA-T-CACCAATCAAATAATCAG--TATTCA-TAAAAAAAAAAACACTTGTAAAACATAGCTATTGTGCCACACTAAGGN-----ACCAAT-C---AAATAATCAGTAT--TCATTAAAAAAAAAACACCTGTAAAACATAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAATGGAATTCAGGT----GTTTTGA-C-AAAACGAAATTGA--TTCTGCCAGTA------------------------CTAT--------------AC------------A-TAT--ACA-TG-TC-------T-------G-------C-------ATAA------TTTCATAG--GT--GT-AGGAAA--------------A-G----T-------------T----------T----T-------A--A----AAA---------A-AAC----CTTCAGGTTTG--TA--TCTAAATTT--A--A--GTGGCATTATATTG-G---TTTATTCTTGTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAT--TCAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGGTG-TATTTGATT-------CACTG----------ATGCGTATGGATTAAAGTGGATTTTATTGTTT---GTCATTGACTG--CTTTA--C-A-C--CTGAATA-TGTGCAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------T-------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|10 : CCTCTA-GCAT-CCATTGTACATTGTAAAAAA-T-TCT-CGCCG-CT-----AAAAAAG--CCAA---TTTTGGTA-C-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCCTAA-ACA-AA--TGTTTA-T-CACCAATCAAATAATCAG--TATTCA-TTAAAACACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGA------ATTAAT-
gi|10 : aaCAAAGCT-TTATCCTAAACAAATGTTTATCACCAAT-C---AAATAATCAGTAT--TCATTAAAACACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGAATTAATTCATAATTTTAAAA-TCGAATTAGAC-ACAGATGACTGAGGTG---AAGGTCGTTTACTAAAATTTCtcataattttaaaatcgaattagacacagatgactgaggtgaaggtcgtttactaaaatttc
gi|11 : aacctctagcatccattgtacattgtaaaaaattctcgccgctaaaaaagccaattttggtacgggttgtttaaagaacattAATGC---AAATAATCA-TAC--TAAGGTGTACACG--CACCTTTAAAACAAAGCTATTCTGCCACACTAAGGATCAATCCATAATTTTAAAA-TCGAATTTGACTA---ATGACTGAGGTGTTCAAGGTCGTCTACTAA-------------AATTGAGAT----GTT----------------TCGA--TACTGTCAATA------------------------CTAT--------------AC------------
gi|12 : attcttcttaatcattcatcaATGAAAA-GAATTGACTGGTG----GCTTATCAA-GAAGA-G-TAT--GATTAAATGAACACTG----------ATGCAAATGGATTAAAGTGGA-TTTATTGTTT---GTCGTTGACTGTTTTTTAC-C-A-C--CCTAAAA-TATGTAT-GTTGCTTTTTAAAGTCATTTGT-TTAGTATTATTT-TCACTCAAA---------A------TGTTCCG--AA-C--A-A-AA-TC-A-GTCGAAA-TAGCTTG-TT----TAA-AAT-G---GAGT-T-AGGA--tttgctttgtgcaaggtaaaagtgattgttacataatg
gi|13 : TTTA--AACAATTATG-TGTTTGATTAAT-GCACACTG----------ATGCATATGGATCAAAGTAGA-TTTAACGTTT---TACAGTGATTG--CTGTA--C---CTTCTGAAAA-TACTTAAGG-TTC--AT-AAAGTTACTCAA-TGACTA----TT-TCATTCAAAA-------TAG-----TGTCCCG--CC-CG-A-A-AT-TT-A-TTCGGAACTACATCG-TT---AAAA-AAT-G---G-GG-TACGAA--gtta
gi|14 : CCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAA--CCAA---TTTTGATA-T-GGGTTGTG-T---AA-AGAA-CACC-CAAAGCTT-TATCCTTA-ACA-AA--TGTTTA-T-CACCATTCAAATAAACAG--TATTAATTAAAAAAACG--CACCTTTAAAACATAGCTATTATTCCACACTAAGG------ATTAAT-CCATAAATgat
gi|15 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAG--TCAA---TTTTGATA-T-GGGTTGTT-TA--AA-AGAAGCATT-CAAAGATT-TATC-TTA-ACA-AA--T-GTTA-T-CAACAATCAAATAATCAG--TATTCA-TTAAA--ACG--CACC-TTAAAACATAGCTATTATGCCACACTAAGG------ATCAAT-C----CATAATttaaaattgaa
gi|16 : aaAAC-CTG----------ATGCAAATGGATTAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--TTTTAACC-ACC--CTAAAAA-TATGT---T-TGC--TTTAAAGTCATTTGT-TTAGTA-TATTT---A-TCAAAA-------TG------TTTCCCGGAACAA--A-A-AT-TC-A-GTCGGAAATAGCTTG-TTAAAAAAA-AAT-G---G-ATGT-TGGA--ttaaaatcgaa
gi|17 : TGCAT-TGG-TTAAAGTGGAATTTATTGTT----GTCATTGACTG--CTTTA--CAA-C--CTGAAAATTGTGTCA-G-AGC--CT-AAAATCACTTGTGCCACTATTATTTGTGAT---AAA-------TAT-----TGTT-CG--AC-G--C-A-ATATC-AGGTCGG-ACTAGCTCG-TT---AGAA-AAT-GGGTG-GT-T-CGGA--gtt
gi|18 : gatGGATCAAAGTACA-TTTATTGCTT---GTTGCTGACTA--CTTTA--C-CTC--CTGAAAA-CATGTAC-G-TGC--CGGAAAATTACTTAT-TGGCTAATATTT-TCACTCAAAA-------TA------TGTTCC---AC-CA-A-A-AT-TC-A-GTCGGAATTAGCTCGTTT---CAAA-ATT-G---G-GT-T-CGTA--g
gi|19 : CTTCTAAGCATTCCATTGTC--------AAATATGTCT-CGCCGGCT-----GAAAAG---CCAA---TTTTGGTAAT-GGGTTGTT-T---AT-ATAA-CATCGCAATGCTTCTATCTTTACACA-AA--TGTATATT-CACCAAC--AATATTCGG--TATTCA-TAAAAgttag
gi|2 : gacG-CA-----GAAAAGG--CCAGCTGTTATGATA-T-GGGTTGTTAT---AA-AGAA-TATT-CAAAACTT-TATCATTA-ACA-AA--TGGTCA-T-CACCAACCAAATAATCGT--TGTTCA-TACGGAGACG--CACCTTTAAAACAAAGTTA-AATGCCACACTAGGG------AATAAT-C----CATAATc
gi|2 : t------ACCAAC-C---AAATAATCGTTGT--TCATACGGAGACG--CACCTTTAAAACAAAGTTAA-ATGCCACACTAGGGAATAATCCATAATTCTAAAA-TCGAATTGGATGACAGATGATTGAAGGA---AAGGTCGTTTACTAAAATT-CAGAACCAAATTGAGAT----GTTCTGA-C-AAGACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------GCATAATAC-------GTAA------TTTTATGG--GT--GT-GAGAAA--------------G-G----T----A--------TAAA-------T----TGTAAATGA--A----AAA---------A-GAA----CCTTAGGTTAG--TA--TGTAAA--T--A--AATGTG---CCATACTG-G---TTTATTCC-TTTAAAAACAAAC--TGATGA------------TGCAATAT--TTT-TGTTTTTTTGAAAA--A-GATCTGCAAAATAA--GTAT-GACCTGGAA--------------CTGGTTAA----TTA--A------ATG-TATTTAATGCA--GGA-----------------------GGGTCAAAGTGGA------TGTTT---GTTATTGACTG--CTTTA--C-CTC--CTGAAAA-TATGTAA-G-TGC--CCGAAAATCATTTGT-TGATTATTAGAT-TTACTTAATATACATTGTA------TGTTCTG---C-CTAA-A-AT-TC-A-GTCGGAATCTGCGCG-TT---AAAA-AGTAA---G-GT-T-CGTA--TTtctaaaatcgaattggatgacagatgattgaaggaaaggtcgtttactaaaattcagaaccaaattgagatgttctgacaagacgaaattgatactgccagtactatacatatgcatgtccgcataatacgtaattttatgggtgtgagaaaggtataaattgtaaatgaaaaaagaaccttaggttagtatgtaaataaatgtgccatactggtttattcctttaaaaacaaactgatgatgcaatatttttgtttttttgaaaaagatctgcaaaataagtatgacctggaactggttaattaaatgtatttaatgcaggagggtcaaagtggatgtttgttattgactgctttacctcctgaaaatatgtaagtgcccgaaaatcatttgttgattattagatttacttaatatacattgtatgttctgcctaaaattcagtcggaatctgcgcgttaaaaagtaaggttcgtattttg
gi|20 : tgcagaaaaggccagctgttatgatatgggttgttataaagaatattcaaaactttatcattaacaaatggtcatcTT-TCACTCAAAA-------TACATGTATGTTCCA--CC-C--G-ATAT-TC-A-GTCGGAACTAGCTCG-AT----AAA-AAT-GA--G-GT-G-CGGA--ttg
gi|21 : ttaacgttttccagtggttgatttacctcttaaaaatacgcaagttcagCCTCTA-GCAT-CC-TTGTA--------AACT-G-TCT-CACTG-CT-----GACAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGGA-CAGT-CAAAGTTT-TATCATCA-ACA-AA--TGGTTA-T-CACAAATCAAATAATattaggg
gi|22 : taaCAAT-C---AAATAATCAGTAT--TCATTCAAAAACC--CACCTTTAAAACATAGCTACTATGCCATATCAAGGATTAATCAATAATGTTTAAA-TCGAATTAGACAACAGATGATTGAGGTG---AAGacgtaat
gi|23 : ATGG--GT--GT-GAGAAG--------------G-GCATAT----A--------T----------TA---T-------A--A----ATA---------A-AAA----GGTTAGGTTAT--TA--TGTAAA--T--A--A--ATGTT-TCCTACTG-G---TTTATTCCTTTC--AAACGAAC--CGATGA------------T----T-----TT-CG-TTATCTTAAA
gi|24 : TG---AAGGCCGTATACTAAAATTTCGGAATAGAATCCAGGT----GTTTTCA-C-AAAACGAAATTGG--TTCTGCCACTA------------------------TAAT--------------AC------------A-TAT--ACA-TG-TC-------T-------G-------C-------ATAA------T
gi|25 : aGTTATC-TTA-AA-AGAA-AATT-CAAAGGTT-TGTCATTT-TCA-AA--TGGTTA-T-CACCAATTAAATAATCGT--TATTTATTAAAAAGTC---CACCTTTAGAAa
gi|26 : ACTT-TCACTTCAAA-------TA------TGTTC----GC-CTAA-A-AT-TCCA-GTCGGA-CTAGCTCG-TT---AAAACAAT-G---G-Gaag
gi|27 : CCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-TGCCG-CT-----GAAAAGGCTCCAA---CTTcgttggtgttgga
gi|28 : aaACTG--CTTTA--C-ATC--CTGAAAA-TACGTAA-A-TGC--CTGAAAATGACCTg
gi|3 : t-CCATTTTA--------AAAT-T-TCTTCGCCG-CT-----GAAAAGGA-CCTA---TTTTGATA-TCGGGTTATT-TTTAAATAGAA-CTTT-CAAAGCTT-TATCATTA-GCACAACTTGGTTA-TACACCAATCAAATAATCAA--TATTCACTGAAA
gi|3 : AATTTTAAGA-ACGAAT-GGAAAACAGATGATTGAGATGG--AAGGTCTTTTATTAAAATTTTGAACCGGCATTGAGATTGTTATTTTGAAC-AAAAAGAAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGT--------------AC------------ACTAT--GCAGTA-TC-------C-------GATAATA-C-------GTAACTGTGATTTTATGG--GTTTGT-AAAAAATAATGAATTACTTCA-G----TC---A--------T----------T----T-------ACGA----AAA---------ACGAA----CTTTAGGATTG--TGATTGTAAA--T--A--AA-GTG---TTATACTG-A---TT-ATTTCCTT-CAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCG-TTTTCTTGAAACCACGATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACG--CTGATTAAATGTTTA--AACAAT--TGATATGTAATTGA--AGATAATGAGGCATGTCAATGCATATGAAT--AAATGGA-CC--TTGTTCAGAGCC-TTGA-TG----TTA--CTC-C--CTGAAtatttttttaaattttaagaacgaatggaaaacagatgattgagatggaaggtcttttattaaaattttgaaccggcattgagattgttattttgaacaaaaagaaattggagtactgccagtactataccgatatagcatgtaacaactgtacactatgcagtatccgataatacgtaactgtgattttatgggtttgtaaaaaataatgaattacttcagtcatttacgaaaaacgaactttaggattgtgattgtaaataaagtgttatactgattatttccttcaaaacgaaccttaatgagtcctctgtggatgctatgttaatttcgttttcttgaaaccacgatctgcaaaaaaaatctattgacgtgaaataaaaacaaacgctgattaaatgtttaaacaattgatatgtaattgaagataatgaggcatgtcaatgcatatgaataaatggaccttgttcagagccttgatgttactccctgaag
gi|4 : ccattttaaaatttcttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatatttttttaCCTTTA-CCAT-TCATTGTA--------CCAT-C-TCT-CGCCG-CT-----GGAAAGG--CCAA---TTTGGGAA-T-GGGTTGTT-C---AA-AGAA-TATT-CAAAGTTT-TGGCATTA-ACG-AA--TGGTCA-T-CAACAATCAAATACT----------------AAGACG--CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGG------ATTAGT-C---g
gi|4 : aCAAT-C---AAATA---------------CTAAGACG--CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGGATTAGTCTAGAATTTTAAAAATCGAATTGAACAACA--TAATTG-----------GTCGTCAACTAAAATTTCGGAACAGAATTGAGAT----GTTTCAA-CGAAAATGAAATCGA--TACCGTCTGTA------------------------CTGT--------------ACTTGCTTAGTGCAA-TGTAGGCA-TA-TCAGTATAAC-------A-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----TAGAAA--------T----------TA---T-------A--A----AAATAAATTACGA-AAATTTTTTTTAGGTTGGATTA--TA-AAA--T--ATCA--ATG---TCtagaattttaaaaatcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|4 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggcattaacgaatggtcatcaaCCGAAAA--ACGATCCGCAAAATAA--CAAT-GACATGAAATTAAAACAAATT--ATGATTAAATGTTtaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|5 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggcattaacgaatggtcatcaacaatcaaatactaagacgcacctttaaaataaagctattctgccacagtaaggattagtctagaattttaaaaatcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaCTGTTATGCCACACTAAGAATTAATTCATAATTTTAAAA-TCGAATTAGACA-CAGATGACTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAATGAAATGCAGGT----ATTTTGA-C-AAAACGAAATTGA--TTCTGCCCGTA------------------------CTAT--------------AC------------G-TCC--GCA-TAAT----------------A-------C-------GTAA------TTTCATGGTTGT--AT-GAGAAG--------------T-G----T----AAATTATAAT----------T----T-------A--A----AAA---------T-GAA----CTTCAGGTTTG--TA--TGTAAAATT--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CA-TTTTCGGAAAA--ACGATCTGCAAAATAT--CTAG-GACGTGAAATAAAAACAAATT--CAGG--------TTA--AACAA---------TTGAT-------------------------GCATATGGATTAATGTGGA-TTTATTGTTT---GTCAATGACTG--CTTTAT-C-A-C--CTGAAAA-TGTACAA-T-TGC--CTGAAAATTACTTGT-GTACTATTATTT-TCACTCAAAA-------TA------TGTTTCG--AC-C--A-A-AT-TC-A-GTCGGAATTAGCTCG-TT---AAAA-ATG-G---G-GT-T-CGGATGTTAGAaa
gi|6 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-GGCCA-ATTTAATGAAAAGG--CCAA---TTTTAATA-T-TGGTTGAT-T---AA-AGAA-CATT-CAAAGCTG-TATCAATA-ACA-GA--TGGTCA-T-CACCAATCAAATAAT-GGTATATTCG-TACGAAGATG--CACCTTTAAATCAAAACTAGTCTGCTACACTAAGG------ATTAAT-C----CATAATg
gi|6 : a------ACCAAT-C---AAATAAT-GGTATATTCGTACGAAGATG--CACCTTTAAATCAAAACTAGTCTGCTACACTAAGGATTAATCCATAATTTGAAAA-TTAAATTTCACAACAGATTATTGCGGTG---AAGGTCGCTTGCTAAAATTTCTGAACGGAATTGAAAT----GTTTTGA-C-AAAACGAATTTGA--TACTTGCAGTA------------------------ATATATTTGCCTTGGAAAAC------------A-TGT--GCT-TG-TC-------CACATAATA-------C-------GTAA------TTTTATTG--GT--GT-GAGAAA--------------G-G----T----A--------TAGATAATAAAT----G-------A--A----AAA---------A-GAA----CTTTAGGTTAG--CA--TGTAAA--TAAA--A--GTG---TCATACTATGTATTTTATTCA-TTTCAACACGAAC--AGAGGA------------TGAAAAAC--TTT-TG-TTTTCTGAAAA--ACAATCTGCAAAATAA--TTAT-GACGTGAAATAAAAATAttgaaaattaaatttcacaacagattattgcggtgaaggtcgcttgctaaaatttctgaacggaattgaaatgttttgacaaaacgaatttgatacttgcagtaatatatttgccttggaaaacatgtgcttgtccacataatacgtaattttattggtgtgagaaaggtatagataataaatgaaaaaagaactttaggttagcatgtaaataaaagtgtcatactatgtattttattcatttcaacacgaacagaggatgaaaaacttttgttttctgaaaaacaatctgcaaaataattatgacgtgaaataaaaata
gi|7 : acctctagcatccattgtaaaaattctggccaatttaatgaaaaggccaattttaatattggttgattaaagaacattcaaagctgtatcaataacagatggtcatcAAA-TCAAATTGGACAAAAGATGATTGAGGTG---AAGGTCGTTTACTAAAAT--------------AAGGT----GTTTTGA-C-AAAACGAAATTGA--ATCTGCC-TTA------------------------TTAT--------------AC------------A-TAT--GAA-TG-TC-------C-------G-------CATAATACGTAA------TTCCATGG--GT--GTAGAAAAA--------------GTG----T----AAA------T----------TATAAT-------A--A----AAAT--------A-GAA----CTTCAGGTTTG--TA------AA--TTAA--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAG--TTAT-GATGTGAAATAATAACAAATT--CCGATTAAATGTTTA--AACGATGATG-TATTTGATTAAT-GAACACTG----------ATGAATATGGATTAAA------------ATTT---GTCA-TGACTG--CTTTA--C-C-C--CTGAAAA-TGTGT-A-G-TGC--CTGAAA----------TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--AGA-AT-TC-A-GTCGAAA
gi|8 : CTATTATGCCACACTAAGAATTGATCCATAAATATAAAA-TCGAATTGGAAAACAGATGTTTGAGAT----ATGGTCTTTTA-TCAATTTTTGGAATGGCATTGAGAT----ATTTTGA-C-AAAACGAAATTCA--TAATGCCAGTA------------------------CTGT--------------AC------------A-TTT--GCA-TA-TC-------C-------A-------C-------ATAA------T--------------------------------------G----C----A--------T-----------------------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGT--------A--A--ATG---T------------------CCT-----------AC--TGGTG--------------------T--ATT-TA-TTTT---AAAA--ACGAACTGCAAAA------------------------ACA--TT--CTGGATAAATGTTTA--AAAGACGATG-TATTTGATTAAA-GAACACCG----------ATGCTCATGGATCAAAGTGGA-TTTATTGTTT---GTCATTGACTG--ATTTA--C-tggggttaggatgttagaa
gi|9 : -------C-------GTAA------TTTCATGG--GT--TT-GAGAAA--------------G-T----T----A--------CAAATTA----T----T-------A--ATAAAAAA---------A-GAA----CTTTAGATTTG--TA--TGTAAA--TCAA--A--GAG---TC-------------------CTTTCAAAACAAAC--TAATGA------------T------T---TT-TG-TTTTCTGAAAA--ACGATTAGCAAAATAA--TTAT-GACATGAAATAAAAATAAACT--CTGGTTAAATGTATA--AACGATGATG-TATTTGATTAAT-GAACACTG----------ATCCATATGGATCAACGTGGA-TTTATTGTTT---GTCATTGACTC--TTTTA--C-CTC--CTTAAAT-TATATAA-G-TGT--CTGAAAATC---------ACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--CC-T--A-A-AT-TC-A-GTCc
Alignments
lowQualScore : 11111111 111 1 111111 111111 33333333333333333333333333333333333333333333333333333333 4444444444444444444444444444444 111111 99999999999999999999999999999999999999999999999999999999999 222222222 22222 111 33333333333333333333333 22222222222222222222 222222 111111111111111 11 1111 111
lowQualScore : 4 4 44444444 55 4 4 3 99999 88 666 4 4 3 555 3 3 3 3 4 3 3 55 3 3 0 55 2 0 0 66 1 0 444444 1 3 555555 44 77 1 0 1 77 1 3 999 22 8888 4 4 55 1 0 99999999999999999999999999999999999999999999999999999999 4 66 4 4 9999999999999999999999999999999 111111 55 55 4 77777777777777777777777777777777777777777777777777777777777 55 8888 000000000 4 8888 1 55 55 00000 55 99 222 1 99999 1 5 11 66 11111111111111111111111 4 4 66 9999 4 0 66 1 66 1 77 4 3 55555555555555555555 2 6 555 55 44 888888 44 3 2 3 3 55 3 4 2 3 3 666666666666666 666 3 55 3 3 3 3 3 2 4 0000 4 4 111 4 4 4 66
lowQualScore : . . ........ .. . . . ..... .. ... . . . ... . . . . . . . .. . . . .. . . . .. . . ...... . . ...... .. .. . . . .. . . ... .. .... . . .. . . ........................................................ . .. . . ............................... ...... .. .. . ........................................................... .. .... ......... . .... . .. .. ..... .. .. ... . ..... . . .. .. ....................... . . .. .... . . .. . .. . .. . . .................... . . ... .. .. ...... .. . . . . .. . . . . . ............... ... . .. . . . . . . . .... . . ... . . . ..
lowQualScore : 4 0 55555555 00 0 0 6 11111 66 444 0 0 6 000 6 6 6 6 4 6 6 00 6 6 5 55 0 1 2 99 0 1 111111 8 1 222222 44 99 0 4 7 99 0 6 222 11 5555 0 0 55 4 9 33333333333333333333333333333333333333333333333333333333 4 11 4 4 8888888888888888888888888888888 555555 55 55 0 33333333333333333333333333333333333333333333333333333333333 55 5555 000000000 0 5555 2 55 55 99999 55 55 555 8 66666 8 2 99 11 33333333333333333333333 4 4 11 9999 4 7 11 8 11 1 66 4 4 33333333333333333333 2 7 888 33 22 333333 66 6 1 6 6 00 6 0 1 4 3 444444444444444 999 3 88 3 3 3 3 3 3 0 2222 0 0 000 0 4 4 11
consensus : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---A--AATAATCGGTAT--TCATNCGAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGAT----GTTTTGA-C-AAAACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------G-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGTAAA--T--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGATG-TATTTGATTAA--GAACACTG----------ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTTA--C-A-C--CTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
Reference ( family-1299 ) : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---A--AATAATCGGTAT--TCATNCGAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGAT----GTTTTGA-C-AAAACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------G-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGTAAA--T--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGATG-TATTTGATTAA--GAACACTG----------ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTTA--C-A-C--CTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|1 : CCTCTA-GCAT-CCATTGTA--------AAAT-T-TCT-CACCG-CT-----GAAAAAG--CCAA---TTTTGATA-T-GGTTTGTT-T---CA-AGAA-CATT-GGAAGTTT-TATCCTTA-ACA-AA--TGTTTA-T-CACCAATCAAATAATCAG--TATTCA-TAAAAAAAAAAACACTTGTAAAACATAGCTATTGTGCCACACTAAGGN-----ACCAAT-C---A--AATAATCAGTAT--TCATTAAAAAAAAAACACCTGTAAAACATAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAATGGAATTCAGGT----GTTTTGA-C-AAAACGAAATTGA--TTCTGCCAGTA------------------------CTAT--------------AC------------A-TAT--ACA-TG-TC-------T-------G-------C-------ATAA------TTTCATAG--GT--GT-AGGAAA--------------A-G----T-------------T----------T----T-------A--A----AAA---------A-AAC----CTTCAGGTTTG--TA--TCTAAATTT--A--A--GTGGCATTATATTG-G---TTTATTCTTGTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAT--TCAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGGTG-TATTTGATT-------CACTG----------ATGCGTATGGATTAAAGTGGATTTTATTGTTT---GTCATTGACTG--CTTTA--C-A-C--CTGAATA-TGTGCAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------T-------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|10 : CCTCTA-GCAT-CCATTGTACATTGTAAAAAA-T-TCT-CGCCG-CT-----AAAAAAG--CCAA---TTTTGGTA-C-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCCTAA-ACA-AA--TGTTTA-T-CACCAATCAAATAATCAG--TATTCA-TTAAAACACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGA------ATTAAT-
gi|10 : aaCAAAGCT-TTATCCTAAACAAATGTTTATCACCAAT-C---A--AATAATCAGTAT--TCATTAAAACACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGAATTAATTCATAATTTTAAAA-TCGAATTAGAC-ACAGATGACTGAGGTG---AAGGTCGTTTACTAAAATTTCtcataattttaaaatcgaattagacacagatgactgaggtgaaggtcgtttactaaaatttc
gi|11 : aacctctagcatccattgtacattgtaaaaaattctcgccgctaaaaaagccaattttggtacgggttgtttaaagaacattAATGC---A--AATAATCA-TAC--TAAGGTGTACACG--CACCTTTAAAACAAAGCTATTCTGCCACACTAAGGATCAATCCATAATTTTAAAA-TCGAATTTGACTA---ATGACTGAGGTGTTCAAGGTCGTCTACTAA-------------AATTGAGAT----GTT----------------TCGA--TACTGTCAATA------------------------CTAT--------------AC------------
gi|12 : attcttcttaatcattcatcaATGAAAA-GAATTGACTGGTG----GCTTATCAA-GAAGA-G-TAT--GATTAAATGAACACTG----------ATGCAAATGGATTAAAGTGGA-TTTATTGTTT---GTCGTTGACTGTTTTTTAC-C-A-C--CCTAAAA-TATGTAT-GTTGCTTTTTAAAGTCATTTGT-TTAGTATTATTT-TCACTCAAA---------A------TGTTCCG--AA-C--A-A-AA-TC-A-GTCGAAA-TAGCTTG-TT----TAA-AAT-G---GAGT-T-AGGA--tttgctttgtgcaaggtaaaagtgattgttacataatg
gi|13 : TTTA--AACAATTATG-TGTTTGATTAAT-GCACACTG----------ATGCATATGGATCAAAGTAGA-TTTAACGTTT---TACAGTGATTG--CTGTA--C---CTTCTGAAAA-TACTTAAGG-TTC--AT-AAAGTTACTCAA-TGACTA----TT-TCATTCAAAA-------TAG-----TGTCCCG--CC-CG-A-A-AT-TT-A-TTCGGAACTACATCG-TT---AAAA-AAT-G---G-GG-TACGAA--gtta
gi|14 : CCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAA--CCAA---TTTTGATA-T-GGGTTGTG-T---AA-AGAA-CACC-CAAAGCTT-TATCCTTA-ACA-AA--TGTTTA-T-CACCATTCAAATAAACAG--TATTAATTAAAAAAACG--CACCTTTAAAACATAGCTATTATTCCACACTAAGG------ATTAAT-CCATA--AATgat
gi|15 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAG--TCAA---TTTTGATA-T-GGGTTGTT-TA--AA-AGAAGCATT-CAAAGATT-TATC-TTA-ACA-AA--T-GTTA-T-CAACAATCAAATAATCAG--TATTCA-TTAAA--ACG--CACC-TTAAAACATAGCTATTATGCCACACTAAGG------ATCAAT-C------CATAATttaaaattgaa
gi|16 : aaAAC-CTG----------ATGCAAATGGATTAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--TTTTAACC-ACC--CTAAAAA-TATGT---T-TGC--TTTAAAGTCATTTGT-TTAGTA-TATTT---A-TCAAAA-------TG------TTTCCCGGAACAA--A-A-AT-TC-A-GTCGGAAATAGCTTG-TTAAAAAAA-AAT-G---G-ATGT-TGGA--ttaaaatcgaa
gi|17 : TGCAT-TGG-TTAAAGTGGAATTTATTGTT----GTCATTGACTG--CTTTA--CAA-C--CTGAAAATTGTGTCA-G-AGC--CT-AAAATCACTTGTGCCACTATTATTTGTGAT---AAA-------TAT-----TGTT-CG--AC-G--C-A-ATATC-AGGTCGG-ACTAGCTCG-TT---AGAA-AAT-GGGTG-GT-T-CGGA--gtt
gi|18 : gatGGATCAAAGTACA-TTTATTGCTT---GTTGCTGACTA--CTTTA--C-CTC--CTGAAAA-CATGTAC-G-TGC--CGGAAAATTACTTAT-TGGCTAATATTT-TCACTCAAAA-------TA------TGTTCC---AC-CA-A-A-AT-TC-A-GTCGGAATTAGCTCGTTT---CAAA-ATT-G---G-GT-T-CGTA--g
gi|19 : CTTCTAAGCATTCCATTGTC--------AAATATGTCT-CGCCGGCT-----GAAAAG---CCAA---TTTTGGTAAT-GGGTTGTT-T---AT-ATAA-CATCGCAATGCTTCTATCTTTACACA-AA--TGTATATT-CACCAAC--AATATTCGG--TATTCA-TAAAAgttag
gi|2 : gacG-CA-----GAAAAGG--CCAGCTGTTATGATA-T-GGGTTGTTAT---AA-AGAA-TATT-CAAAACTT-TATCATTA-ACA-AA--TGGTCA-T-CACCAACCAAATAATCGT--TGTTCA-TACGGAGACG--CACCTTTAAAACAAAGTTA-AATGCCACACTAGGG------AATAAT-C------CATAATc
gi|2 : t------ACCAAC-C---A--AATAATCGTTGT--TCATACGGAGACG--CACCTTTAAAACAAAGTTAA-ATGCCACACTAGGGAATAATCCATAATTCTAAAA-TCGAATTGGATGACAGATGATTGAAGGA---AAGGTCGTTTACTAAAATT-CAGAACCAAATTGAGAT----GTTCTGA-C-AAGACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------GCATAATAC-------GTAA------TTTTATGG--GT--GT-GAGAAA--------------G-G----T----A--------TAAA-------T----TGTAAATGA--A----AAA---------A-GAA----CCTTAGGTTAG--TA--TGTAAA--T--A--AATGTG---CCATACTG-G---TTTATTCC-TTTAAAAACAAAC--TGATGA------------TGCAATAT--TTT-TGTTTTTTTGAAAA--A-GATCTGCAAAATAA--GTAT-GACCTGGAA--------------CTGGTTAA----TTA--A------ATG-TATTTAATGCA--GGA-----------------------GGGTCAAAGTGGA------TGTTT---GTTATTGACTG--CTTTA--C-CTC--CTGAAAA-TATGTAA-G-TGC--CCGAAAATCATTTGT-TGATTATTAGAT-TTACTTAATATACATTGTA------TGTTCTG---C-CTAA-A-AT-TC-A-GTCGGAATCTGCGCG-TT---AAAA-AGTAA---G-GT-T-CGTA--TTtctaaaatcgaattggatgacagatgattgaaggaaaggtcgtttactaaaattcagaaccaaattgagatgttctgacaagacgaaattgatactgccagtactatacatatgcatgtccgcataatacgtaattttatgggtgtgagaaaggtataaattgtaaatgaaaaaagaaccttaggttagtatgtaaataaatgtgccatactggtttattcctttaaaaacaaactgatgatgcaatatttttgtttttttgaaaaagatctgcaaaataagtatgacctggaactggttaattaaatgtatttaatgcaggagggtcaaagtggatgtttgttattgactgctttacctcctgaaaatatgtaagtgcccgaaaatcatttgttgattattagatttacttaatatacattgtatgttctgcctaaaattcagtcggaatctgcgcgttaaaaagtaaggttcgtattttg
gi|20 : tgcagaaaaggccagctgttatgatatgggttgttataaagaatattcaaaactttatcattaacaaatggtcatcTT-TCACTCAAAA-------TACATGTATGTTCCA--CC-C--G-ATAT-TC-A-GTCGGAACTAGCTCG-AT----AAA-AAT-GA--G-GT-G-CGGA--ttg
gi|21 : ttaacgttttccagtggttgatttacctcttaaaaatacgcaagttcagCCTCTA-GCAT-CC-TTGTA--------AACT-G-TCT-CACTG-CT-----GACAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGGA-CAGT-CAAAGTTT-TATCATCA-ACA-AA--TGGTTA-T-CACAAATCAAATAATattaggg
gi|22 : taaCAAT-C---A--AATAATCAGTAT--TCATTCAAAAACC--CACCTTTAAAACATAGCTACTATGCCATATCAAGGATTAATCAATAATGTTTAAA-TCGAATTAGACAACAGATGATTGAGGTG---AAGacgtaat
gi|23 : ATGG--GT--GT-GAGAAG--------------G-GCATAT----A--------T----------TA---T-------A--A----ATA---------A-AAA----GGTTAGGTTAT--TA--TGTAAA--T--A--A--ATGTT-TCCTACTG-G---TTTATTCCTTTC--AAACGAAC--CGATGA------------T----T-----TT-CG-TTATCTTAAA
gi|24 : TG---AAGGCCGTATACTAAAATTTCGGAATAGAATCCAGGT----GTTTTCA-C-AAAACGAAATTGG--TTCTGCCACTA------------------------TAAT--------------AC------------A-TAT--ACA-TG-TC-------T-------G-------C-------ATAA------T
gi|25 : aGTTATC-TTA-AA-AGAA-AATT-CAAAGGTT-TGTCATTT-TCA-AA--TGGTTA-T-CACCAATTAAATAATCGT--TATTTATTAAAAAGTC---CACCTTTAGAAa
gi|26 : ACTT-TCACTTCAAA-------TA------TGTTC----GC-CTAA-A-AT-TCCA-GTCGGA-CTAGCTCG-TT---AAAACAAT-G---G-Gaag
gi|27 : CCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-TGCCG-CT-----GAAAAGGCTCCAA---CTTcgttggtgttgga
gi|28 : aaACTG--CTTTA--C-ATC--CTGAAAA-TACGTAA-A-TGC--CTGAAAATGACCTg
gi|3 : t-CCATTTTA--------AAAT-T-TCTTCGCCG-CT-----GAAAAGGA-CCTA---TTTTGATA-TCGGGTTATT-TTTAAATAGAA-CTTT-CAAAGCTT-TATCATTA-GCACAACTTGGTTA-TACACCAATCAAATAATCAA--TATTCACTGAAA
gi|3 : AATTTTAAGA-ACGAAT-GGAAAACAGATGATTGAGATGG--AAGGTCTTTTATTAAAATTTTGAACCGGCATTGAGATTGTTATTTTGAAC-AAAAAGAAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGT--------------AC------------ACTAT--GCAGTA-TC-------C-------GATAATA-C-------GTAACTGTGATTTTATGG--GTTTGT-AAAAAATAATGAATTACTTCA-G----TC---A--------T----------T----T-------ACGA----AAA---------ACGAA----CTTTAGGATTG--TGATTGTAAA--T--A--AA-GTG---TTATACTG-A---TT-ATTTCCTT-CAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCG-TTTTCTTGAAACCACGATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACG--CTGATTAAATGTTTA--AACAAT--TGATATGTAATTGA--AGATAATGAGGCATGTCAATGCATATGAAT--AAATGGA-CC--TTGTTCAGAGCC-TTGA-TG----TTA--CTC-C--CTGAAtatttttttaaattttaagaacgaatggaaaacagatgattgagatggaaggtcttttattaaaattttgaaccggcattgagattgttattttgaacaaaaagaaattggagtactgccagtactataccgatatagcatgtaacaactgtacactatgcagtatccgataatacgtaactgtgattttatgggtttgtaaaaaataatgaattacttcagtcatttacgaaaaacgaactttaggattgtgattgtaaataaagtgttatactgattatttccttcaaaacgaaccttaatgagtcctctgtggatgctatgttaatttcgttttcttgaaaccacgatctgcaaaaaaaatctattgacgtgaaataaaaacaaacgctgattaaatgtttaaacaattgatatgtaattgaagataatgaggcatgtcaatgcatatgaataaatggaccttgttcagagccttgatgttactccctgaag
gi|4 : ccattttaaaatttcttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatatttttttaCCTTTA-CCAT-TCATTGTA--------CCAT-C-TCT-CGCCG-CT-----GGAAAGG--CCAA---TTTGGGAA-T-GGGTTGTT-C---AA-AGAA-TATT-CAAAGTTT-TGGCATTA-ACG-AA--TGGTCA-T-CAACAATCAAATACT----------------AAGACG--CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGG------ATTAGT-C---g
gi|4 : aCATTAACG------AATGGT-C---ATCAACAATCAA-------ATACTAAGACG--CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGGATTAGTCTAGAATTTTAAAAATCGAATTGAACAACA--TAATTG-----------GTCGTCAACTAAAATTTCGGAACAGAATTGAGAT----GTTTCAA-CGAAAATGAAATCGA--TACCGTCTGTA------------------------CTGT--------------ACTTGCTTAGTGCAA-TGTAGGCA-TA-TCAGTATAAC-------A-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----TAGAAA--------T----------TA---T-------A--A----AAATAAATTACGA-AAATTTTTTTTAGGTTGGATTA--TA-AAA--T--ATCA--ATG---TCtagaattttaaaaatcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|4 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggCCGAAAA--ACGATCCGCAAAATAA--CAAT-GACATGAAATTAAAACAAATT--ATGATTAAATGTTtaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|5 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggcattaacgaatggtcatcaacaatcaaatactaagacgcacctttaaaataaagctattctgccacagtaaggattagtctagaattttaaaaatcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaCTGTTATGCCACACTAAGAATTAATTCATAATTTTAAAA-TCGAATTAGACA-CAGATGACTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAATGAAATGCAGGT----ATTTTGA-C-AAAACGAAATTGA--TTCTGCCCGTA------------------------CTAT--------------AC------------G-TCC--GCA-TAAT----------------A-------C-------GTAA------TTTCATGGTTGT--AT-GAGAAG--------------T-G----T----AAATTATAAT----------T----T-------A--A----AAA---------T-GAA----CTTCAGGTTTG--TA--TGTAAAATT--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CA-TTTTCGGAAAA--ACGATCTGCAAAATAT--CTAG-GACGTGAAATAAAAACAAATT--CAGG--------TTA--AACAA---------TTGAT-------------------------GCATATGGATTAATGTGGA-TTTATTGTTT---GTCAATGACTG--CTTTAT-C-A-C--CTGAAAA-TGTACAA-T-TGC--CTGAAAATTACTTGT-GTACTATTATTT-TCACTCAAAA-------TA------TGTTTCG--AC-C--A-A-AT-TC-A-GTCGGAATTAGCTCG-TT---AAAA-ATG-G---G-GT-T-CGGATGTTAGAaa
gi|6 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-GGCCA-ATTTAATGAAAAGG--CCAA---TTTTAATA-T-TGGTTGAT-T---AA-AGAA-CATT-CAAAGCTG-TATCAATA-ACA-GA--TGGTCA-T-CACCAATCAAATAAT-GGTATATTCG-TACGAAGATG--CACCTTTAAATCAAAACTAGTCTGCTACACTAAGG------ATTAAT-C------CATAATg
gi|6 : a------ACCAAT-C---A--AATAAT-GGTATATTCGTACGAAGATG--CACCTTTAAATCAAAACTAGTCTGCTACACTAAGGATTAATCCATAATTTGAAAA-TTAAATTTCACAACAGATTATTGCGGTG---AAGGTCGCTTGCTAAAATTTCTGAACGGAATTGAAAT----GTTTTGA-C-AAAACGAATTTGA--TACTTGCAGTA------------------------ATATATTTGCCTTGGAAAAC------------A-TGT--GCT-TG-TC-------CACATAATA-------C-------GTAA------TTTTATTG--GT--GT-GAGAAA--------------G-G----T----A--------TAGATAATAAAT----G-------A--A----AAA---------A-GAA----CTTTAGGTTAG--CA--TGTAAA--TAAA--A--GTG---TCATACTATGTATTTTATTCA-TTTCAACACGAAC--AGAGGA------------TGAAAAAC--TTT-TG-TTTTCTGAAAA--ACAATCTGCAAAATAA--TTAT-GACGTGAAATAAAAATAttgaaaattaaatttcacaacagattattgcggtgaaggtcgcttgctaaaatttctgaacggaattgaaatgttttgacaaaacgaatttgatacttgcagtaatatatttgccttggaaaacatgtgcttgtccacataatacgtaattttattggtgtgagaaaggtatagataataaatgaaaaaagaactttaggttagcatgtaaataaaagtgtcatactatgtattttattcatttcaacacgaacagaggatgaaaaacttttgttttctgaaaaacaatctgcaaaataattatgacgtgaaataaaaata
gi|7 : acctctagcatccattgtaaaaattctggccaatttaatgaaaaggccaattttaatattggttgattaaagaacattcaaagctgtatcaataacagatggtcatcAAA-TCAAATTGGACAAAAGATGATTGAGGTG---AAGGTCGTTTACTAAAAT--------------AAGGT----GTTTTGA-C-AAAACGAAATTGA--ATCTGCC-TTA------------------------TTAT--------------AC------------A-TAT--GAA-TG-TC-------C-------G-------CATAATACGTAA------TTCCATGG--GT--GTAGAAAAA--------------GTG----T----AAA------T----------TATAAT-------A--A----AAAT--------A-GAA----CTTCAGGTTTG--TA------AA--TTAA--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAG--TTAT-GATGTGAAATAATAACAAATT--CCGATTAAATGTTTA--AACGATGATG-TATTTGATTAAT-GAACACTG----------ATGAATATGGATTAAA------------ATTT---GTCA-TGACTG--CTTTA--C-C-C--CTGAAAA-TGTGT-A-G-TGC--CTGAAA----------TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--AGA-AT-TC-A-GTCGAAA
gi|8 : CTATTATGCCACACTAAGAATTGATCCATAAATATAAAA-TCGAATTGGAAAACAGATGTTTGAGAT----ATGGTCTTTTA-TCAATTTTTGGAATGGCATTGAGAT----ATTTTGA-C-AAAACGAAATTCA--TAATGCCAGTA------------------------CTGT--------------AC------------A-TTT--GCA-TA-TC-------C-------A-------C-------ATAA------T--------------------------------------G----C----A--------T-----------------------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGT--------A--A--ATG---T------------------CCT-----------AC--TGGTG--------------------T--ATT-TA-TTTT---AAAA--ACGAACTGCAAAA------------------------ACA--TT--CTGGATAAATGTTTA--AAAGACGATG-TATTTGATTAAA-GAACACCG----------ATGCTCATGGATCAAAGTGGA-TTTATTGTTT---GTCATTGACTG--ATTTA--C-tggggttaggatgttagaa
gi|9 : -------C-------GTAA------TTTCATGG--GT--TT-GAGAAA--------------G-T----T----A--------CAAATTA----T----T-------A--ATAAAAAA---------A-GAA----CTTTAGATTTG--TA--TGTAAA--TCAA--A--GAG---TC-------------------CTTTCAAAACAAAC--TAATGA------------T------T---TT-TG-TTTTCTGAAAA--ACGATTAGCAAAATAA--TTAT-GACATGAAATAAAAATAAACT--CTGGTTAAATGTATA--AACGATGATG-TATTTGATTAAT-GAACACTG----------ATCCATATGGATCAACGTGGA-TTTATTGTTT---GTCATTGACTC--TTTTA--C-CTC--CTTAAAT-TATATAA-G-TGT--CTGAAAATC---------ACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--CC-T--A-A-AT-TC-A-GTCc
Alignments
lowQualScore : 11111111 111 1 111111 111111 33333333333333333333333333333333333333333333333333333333 4444444444444444444444444444444 111111 99999999999999999999999999999999999999999999999999999999999 222222222 22222 111 33333333333333333333333 22222222222222222222 222222 111111111111111 11 1111 111
lowQualScore : 4 4 44444444 55 4 4 3 99999 88 666 4 4 3 555 3 3 3 3 4 3 3 55 3 3 0 55 2 0 0 66 1 0 444444 1 3 555555 44 77 1 0 1 77 1 3 999 22 8888 4 4 55 1 0 99999999999999999999999999999999999999999999999999999999 4 66 4 4 9999999999999999999999999999999 111111 55 55 4 77777777777777777777777777777777777777777777777777777777777 55 8888 000000000 4 8888 1 55 55 00000 55 99 222 1 99999 1 5 11 66 11111111111111111111111 4 4 66 9999 4 0 66 1 66 1 77 4 3 55555555555555555555 2 6 555 55 44 888888 44 3 2 3 3 55 3 4 2 3 3 666666666666666 666 3 55 3 3 3 3 3 2 4 0000 4 4 111 4 4 4 66
lowQualScore : . . ........ .. . . . ..... .. ... . . . ... . . . . . . . .. . . . .. . . . .. . . ...... . . ...... .. .. . . . .. . . ... .. .... . . .. . . ........................................................ . .. . . ............................... ...... .. .. . ........................................................... .. .... ......... . .... . .. .. ..... .. .. ... . ..... . . .. .. ....................... . . .. .... . . .. . .. . .. . . .................... . . ... .. .. ...... .. . . . . .. . . . . . ............... ... . .. . . . . . . . .... . . ... . . . ..
lowQualScore : 4 0 55555555 00 0 0 6 11111 66 444 0 0 6 000 6 6 6 6 4 6 6 00 6 6 5 55 0 1 2 99 0 1 111111 8 1 222222 44 99 0 4 7 99 0 6 222 11 5555 0 0 55 4 9 33333333333333333333333333333333333333333333333333333333 4 11 4 4 8888888888888888888888888888888 555555 55 55 0 33333333333333333333333333333333333333333333333333333333333 55 5555 000000000 0 5555 2 55 55 99999 55 55 555 8 66666 8 2 99 11 33333333333333333333333 4 4 11 9999 4 7 11 8 11 1 66 4 4 33333333333333333333 2 7 888 33 22 333333 66 6 1 6 6 00 6 0 1 4 3 444444444444444 999 3 88 3 3 3 3 3 3 0 2222 0 0 000 0 4 4 11
consensus : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---A--AATAATCGGTAT--TCATNCGAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGAT----GTTTTGA-C-AAAACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------G-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGTAAA--T--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGATG-TATTTGATTAA--GAACACTG----------ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTTA--C-A-C--CTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
Reference ( family-1299 ) : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---A--AATAATCGGTAT--TCATNCGAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGAT----GTTTTGA-C-AAAACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------G-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGTAAA--T--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGATG-TATTTGATTAA--GAACACTG----------ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTTA--C-A-C--CTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|1 : CCTCTA-GCAT-CCATTGTA--------AAAT-T-TCT-CACCG-CT-----GAAAAAG--CCAA---TTTTGATA-T-GGTTTGTT-T---CA-AGAA-CATT-GGAAGTTT-TATCCTTA-ACA-AA--TGTTTA-T-CACCAATCAAATAATCAG--TATTCA-TAAAAAAAAAAACACTTGTAAAACATAGCTATTGTGCCACACTAAGGN-----ACCAAT-C---A--AATAATCAGTAT--TCATTAAAAAAAAAACACCTGTAAAACATAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAATGGAATTCAGGT----GTTTTGA-C-AAAACGAAATTGA--TTCTGCCAGTA------------------------CTAT--------------AC------------A-TAT--ACA-TG-TC-------T-------G-------C-------ATAA------TTTCATAG--GT--GT-AGGAAA--------------A-G----T-------------T----------T----T-------A--A----AAA---------A-AAC----CTTCAGGTTTG--TA--TCTAAATTT--A--A--GTGGCATTATATTG-G---TTTATTCTTGTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAT--TCAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGGTG-TATTTGATT-------CACTG----------ATGCGTATGGATTAAAGTGGATTTTATTGTTT---GTCATTGACTG--CTTTA--C-A-C--CTGAATA-TGTGCAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------T-------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|10 : CCTCTA-GCAT-CCATTGTACATTGTAAAAAA-T-TCT-CGCCG-CT-----AAAAAAG--CCAA---TTTTGGTA-C-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCCTAA-ACA-AA--TGTTTA-T-CACCAATCAAATAATCAG--TATTCA-TTAAAACACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGA------ATTAAT-
gi|10 : aaCAAAGCT-TTATCCTAAACAAATGTTTATCACCAAT-C---A--AATAATCAGTAT--TCATTAAAACACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGAATTAATTCATAATTTTAAAA-TCGAATTAGAC-ACAGATGACTGAGGTG---AAGGTCGTTTACTAAAATTTCtcataattttaaaatcgaattagacacagatgactgaggtgaaggtcgtttactaaaatttc
gi|11 : aacctctagcatccattgtacattgtaaaaaattctcgccgctaaaaaagccaattttggtacgggttgtttaaagaacattAATGC---A--AATAATCA-TAC--TAAGGTGTACACG--CACCTTTAAAACAAAGCTATTCTGCCACACTAAGGATCAATCCATAATTTTAAAA-TCGAATTTGACTA---ATGACTGAGGTGTTCAAGGTCGTCTACTAA-------------AATTGAGAT----GTT----------------TCGA--TACTGTCAATA------------------------CTAT--------------AC------------
gi|12 : attcttcttaatcattcatcaATGAAAA-GAATTGACTGGTG----GCTTATCAA-GAAGA-G-TAT--GATTAAATGAACACTG----------ATGCAAATGGATTAAAGTGGA-TTTATTGTTT---GTCGTTGACTGTTTTTTAC-C-A-C--CCTAAAA-TATGTAT-GTTGCTTTTTAAAGTCATTTGT-TTAGTATTATTT-TCACTCAAA---------A------TGTTCCG--AA-C--A-A-AA-TC-A-GTCGAAA-TAGCTTG-TT----TAA-AAT-G---GAGT-T-AGGA--tttgctttgtgcaaggtaaaagtgattgttacataatg
gi|13 : TTTA--AACAATTATG-TGTTTGATTAAT-GCACACTG----------ATGCATATGGATCAAAGTAGA-TTTAACGTTT---TACAGTGATTG--CTGTA--C---CTTCTGAAAA-TACTTAAGG-TTC--AT-AAAGTTACTCAA-TGACTA----TT-TCATTCAAAA-------TAG-----TGTCCCG--CC-CG-A-A-AT-TT-A-TTCGGAACTACATCG-TT---AAAA-AAT-G---G-GG-TACGAA--gtta
gi|14 : CCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAA--CCAA---TTTTGATA-T-GGGTTGTG-T---AA-AGAA-CACC-CAAAGCTT-TATCCTTA-ACA-AA--TGTTTA-T-CACCATTCAAATAAACAG--TATTAATTAAAAAAACG--CACCTTTAAAACATAGCTATTATTCCACACTAAGG------ATTAAT-CCATA--AATgat
gi|15 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAG--TCAA---TTTTGATA-T-GGGTTGTT-TA--AA-AGAAGCATT-CAAAGATT-TATC-TTA-ACA-AA--T-GTTA-T-CAACAATCAAATAATCAG--TATTCA-TTAAA--ACG--CACC-TTAAAACATAGCTATTATGCCACACTAAGG------ATCAAT-C------CATAATttaaaattgaa
gi|16 : aaAAC-CTG----------ATGCAAATGGATTAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--TTTTAACC-ACC--CTAAAAA-TATGT---T-TGC--TTTAAAGTCATTTGT-TTAGTA-TATTT---A-TCAAAA-------TG------TTTCCCGGAACAA--A-A-AT-TC-A-GTCGGAAATAGCTTG-TTAAAAAAA-AAT-G---G-ATGT-TGGA--ttaaaatcgaa
gi|17 : TGCAT-TGG-TTAAAGTGGAATTTATTGTT----GTCATTGACTG--CTTTA--CAA-C--CTGAAAATTGTGTCA-G-AGC--CT-AAAATCACTTGTGCCACTATTATTTGTGAT---AAA-------TAT-----TGTT-CG--AC-G--C-A-ATATC-AGGTCGG-ACTAGCTCG-TT---AGAA-AAT-GGGTG-GT-T-CGGA--gtt
gi|18 : gatGGATCAAAGTACA-TTTATTGCTT---GTTGCTGACTA--CTTTA--C-CTC--CTGAAAA-CATGTAC-G-TGC--CGGAAAATTACTTAT-TGGCTAATATTT-TCACTCAAAA-------TA------TGTTCC---AC-CA-A-A-AT-TC-A-GTCGGAATTAGCTCGTTT---CAAA-ATT-G---G-GT-T-CGTA--g
gi|19 : CTTCTAAGCATTCCATTGTC--------AAATATGTCT-CGCCGGCT-----GAAAAG---CCAA---TTTTGGTAAT-GGGTTGTT-T---AT-ATAA-CATCGCAATGCTTCTATCTTTACACA-AA--TGTATATT-CACCAAC--AATATTCGG--TATTCA-TAAAAgttag
gi|2 : gacG-CA-----GAAAAGG--CCAGCTGTTATGATA-T-GGGTTGTTAT---AA-AGAA-TATT-CAAAACTT-TATCATTA-ACA-AA--TGGTCA-T-CACCAACCAAATAATCGT--TGTTCA-TACGGAGACG--CACCTTTAAAACAAAGTTA-AATGCCACACTAGGG------AATAAT-C------CATAATc
gi|2 : t------ACCAAC-C---A--AATAATCGTTGT--TCATACGGAGACG--CACCTTTAAAACAAAGTTAA-ATGCCACACTAGGGAATAATCCATAATTCTAAAA-TCGAATTGGATGACAGATGATTGAAGGA---AAGGTCGTTTACTAAAATT-CAGAACCAAATTGAGAT----GTTCTGA-C-AAGACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------GCATAATAC-------GTAA------TTTTATGG--GT--GT-GAGAAA--------------G-G----T----A--------TAAA-------T----TGTAAATGA--A----AAA---------A-GAA----CCTTAGGTTAG--TA--TGTAAA--T--A--AATGTG---CCATACTG-G---TTTATTCC-TTTAAAAACAAAC--TGATGA------------TGCAATAT--TTT-TGTTTTTTTGAAAA--A-GATCTGCAAAATAA--GTAT-GACCTGGAA--------------CTGGTTAA----TTA--A------ATG-TATTTAATGCA--GGA-----------------------GGGTCAAAGTGGA------TGTTT---GTTATTGACTG--CTTTA--C-CTC--CTGAAAA-TATGTAA-G-TGC--CCGAAAATCATTTGT-TGATTATTAGAT-TTACTTAATATACATTGTA------TGTTCTG---C-CTAA-A-AT-TC-A-GTCGGAATCTGCGCG-TT---AAAA-AGTAA---G-GT-T-CGTA--TTtctaaaatcgaattggatgacagatgattgaaggaaaggtcgtttactaaaattcagaaccaaattgagatgttctgacaagacgaaattgatactgccagtactatacatatgcatgtccgcataatacgtaattttatgggtgtgagaaaggtataaattgtaaatgaaaaaagaaccttaggttagtatgtaaataaatgtgccatactggtttattcctttaaaaacaaactgatgatgcaatatttttgtttttttgaaaaagatctgcaaaataagtatgacctggaactggttaattaaatgtatttaatgcaggagggtcaaagtggatgtttgttattgactgctttacctcctgaaaatatgtaagtgcccgaaaatcatttgttgattattagatttacttaatatacattgtatgttctgcctaaaattcagtcggaatctgcgcgttaaaaagtaaggttcgtattttg
gi|20 : tgcagaaaaggccagctgttatgatatgggttgttataaagaatattcaaaactttatcattaacaaatggtcatcTT-TCACTCAAAA-------TACATGTATGTTCCA--CC-C--G-ATAT-TC-A-GTCGGAACTAGCTCG-AT----AAA-AAT-GA--G-GT-G-CGGA--ttg
gi|21 : ttaacgttttccagtggttgatttacctcttaaaaatacgcaagttcagCCTCTA-GCAT-CC-TTGTA--------AACT-G-TCT-CACTG-CT-----GACAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGGA-CAGT-CAAAGTTT-TATCATCA-ACA-AA--TGGTTA-T-CACAAATCAAATAATattaggg
gi|22 : taaCAAT-C---A--AATAATCAGTAT--TCATTCAAAAACC--CACCTTTAAAACATAGCTACTATGCCATATCAAGGATTAATCAATAATGTTTAAA-TCGAATTAGACAACAGATGATTGAGGTG---AAGacgtaat
gi|23 : ATGG--GT--GT-GAGAAG--------------G-GCATAT----A--------T----------TA---T-------A--A----ATA---------A-AAA----GGTTAGGTTAT--TA--TGTAAA--T--A--A--ATGTT-TCCTACTG-G---TTTATTCCTTTC--AAACGAAC--CGATGA------------T----T-----TT-CG-TTATCTTAAA
gi|24 : TG---AAGGCCGTATACTAAAATTTCGGAATAGAATCCAGGT----GTTTTCA-C-AAAACGAAATTGG--TTCTGCCACTA------------------------TAAT--------------AC------------A-TAT--ACA-TG-TC-------T-------G-------C-------ATAA------T
gi|25 : aGTTATC-TTA-AA-AGAA-AATT-CAAAGGTT-TGTCATTT-TCA-AA--TGGTTA-T-CACCAATTAAATAATCGT--TATTTATTAAAAAGTC---CACCTTTAGAAa
gi|26 : ACTT-TCACTTCAAA-------TA------TGTTC----GC-CTAA-A-AT-TCCA-GTCGGA-CTAGCTCG-TT---AAAACAAT-G---G-Gaag
gi|27 : CCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-TGCCG-CT-----GAAAAGGCTCCAA---CTTcgttggtgttgga
gi|28 : aaACTG--CTTTA--C-ATC--CTGAAAA-TACGTAA-A-TGC--CTGAAAATGACCTg
gi|3 : t-CCATTTTA--------AAAT-T-TCTTCGCCG-CT-----GAAAAGGA-CCTA---TTTTGATA-TCGGGTTATT-TTTAAATAGAA-CTTT-CAAAGCTT-TATCATTA-GCACAACTTGGTTA-TACACCAATCAAATAATCAA--TATTCACTGAAA
gi|3 : AATTTTAAGA-ACGAAT-GGAAAACAGATGATTGAGATGG--AAGGTCTTTTATTAAAATTTTGAACCGGCATTGAGATTGTTATTTTGAAC-AAAAAGAAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGT--------------AC------------ACTAT--GCAGTA-TC-------C-------GATAATA-C-------GTAACTGTGATTTTATGG--GTTTGT-AAAAAATAATGAATTACTTCA-G----TC---A--------T----------T----T-------ACGA----AAA---------ACGAA----CTTTAGGATTG--TGATTGTAAA--T--A--AA-GTG---TTATACTG-A---TT-ATTTCCTT-CAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCG-TTTTCTTGAAACCACGATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACG--CTGATTAAATGTTTA--AACAAT--TGATATGTAATTGA--AGATAATGAGGCATGTCAATGCATATGAAT--AAATGGA-CC--TTGTTCAGAGCC-TTGA-TG----TTA--CTC-C--CTGAAtatttttttaaattttaagaacgaatggaaaacagatgattgagatggaaggtcttttattaaaattttgaaccggcattgagattgttattttgaacaaaaagaaattggagtactgccagtactataccgatatagcatgtaacaactgtacactatgcagtatccgataatacgtaactgtgattttatgggtttgtaaaaaataatgaattacttcagtcatttacgaaaaacgaactttaggattgtgattgtaaataaagtgttatactgattatttccttcaaaacgaaccttaatgagtcctctgtggatgctatgttaatttcgttttcttgaaaccacgatctgcaaaaaaaatctattgacgtgaaataaaaacaaacgctgattaaatgtttaaacaattgatatgtaattgaagataatgaggcatgtcaatgcatatgaataaatggaccttgttcagagccttgatgttactccctgaag
gi|4 : ccattttaaaatttcttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatatttttttaCCTTTA-CCAT-TCATTGTA--------CCAT-C-TCT-CGCCG-CT-----GGAAAGG--CCAA---TTTGGGAA-T-GGGTTGTT-C---AA-AGAA-TATT-CAAAGTTT-TGGCATTA-ACG-AA--TGGTCA-T-CAACAATCAAATACT----------------AAGACG--CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGG------ATTAGT-C---g
gi|4 : aCATTAACG------AATGGT-C---ATCAACAATCAA-------ATACTAAGACG--CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGGATTAGTCTAGAATTTTAAAAATCGAATTGAACAACA--TAATTG-----------GTCGTCAACTAAAATTTCGGAACAGAATTGAGAT----GTTTCAA-CGAAAATGAAATCGA--TACCGTCTGTA------------------------CTGT--------------ACTTGCTTAGTGCAA-TGTAGGCA-TA-TCAGTATAAC-------A-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----TAGAAA--------T----------TA---T-------A--A----AAATAAATTACGA-AAATTTTTTTTAGGTTGGATTA--TA-AAA--T--ATCA--ATG---TCtagaattttaaaaatcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|4 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggCCGAAAA--ACGATCCGCAAAATAA--CAAT-GACATGAAATTAAAACAAATT--ATGATTAAATGTTtaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|5 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggcattaacgaatggtcatcaacaatcaaatactaagacgcacctttaaaataaagctattctgccacagtaaggattagtctagaattttaaaaatcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaCTGTTATGCCACACTAAGAATTAATTCATAATTTTAAAA-TCGAATTAGACA-CAGATGACTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAATGAAATGCAGGT----ATTTTGA-C-AAAACGAAATTGA--TTCTGCCCGTA------------------------CTAT--------------AC------------G-TCC--GCA-TAAT----------------A-------C-------GTAA------TTTCATGGTTGT--AT-GAGAAG--------------T-G----T----AAATTATAAT----------T----T-------A--A----AAA---------T-GAA----CTTCAGGTTTG--TA--TGTAAAATT--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CA-TTTTCGGAAAA--ACGATCTGCAAAATAT--CTAG-GACGTGAAATAAAAACAAATT--CAGG--------TTA--AACAA---------TTGAT-------------------------GCATATGGATTAATGTGGA-TTTATTGTTT---GTCAATGACTG--CTTTAT-C-A-C--CTGAAAA-TGTACAA-T-TGC--CTGAAAATTACTTGT-GTACTATTATTT-TCACTCAAAA-------TA------TGTTTCG--AC-C--A-A-AT-TC-A-GTCGGAATTAGCTCG-TT---AAAA-ATG-G---G-GT-T-CGGATGTTAGAaa
gi|6 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-GGCCA-ATTTAATGAAAAGG--CCAA---TTTTAATA-T-TGGTTGAT-T---AA-AGAA-CATT-CAAAGCTG-TATCAATA-ACA-GA--TGGTCA-T-CACCAATCAAATAAT-GGTATATTCG-TACGAAGATG--CACCTTTAAATCAAAACTAGTCTGCTACACTAAGG------ATTAAT-C------CATAATg
gi|6 : a------ACCAAT-C---A--AATAAT-GGTATATTCGTACGAAGATG--CACCTTTAAATCAAAACTAGTCTGCTACACTAAGGATTAATCCATAATTTGAAAA-TTAAATTTCACAACAGATTATTGCGGTG---AAGGTCGCTTGCTAAAATTTCTGAACGGAATTGAAAT----GTTTTGA-C-AAAACGAATTTGA--TACTTGCAGTA------------------------ATATATTTGCCTTGGAAAAC------------A-TGT--GCT-TG-TC-------CACATAATA-------C-------GTAA------TTTTATTG--GT--GT-GAGAAA--------------G-G----T----A--------TAGATAATAAAT----G-------A--A----AAA---------A-GAA----CTTTAGGTTAG--CA--TGTAAA--TAAA--A--GTG---TCATACTATGTATTTTATTCA-TTTCAACACGAAC--AGAGGA------------TGAAAAAC--TTT-TG-TTTTCTGAAAA--ACAATCTGCAAAATAA--TTAT-GACGTGAAATAAAAATAttgaaaattaaatttcacaacagattattgcggtgaaggtcgcttgctaaaatttctgaacggaattgaaatgttttgacaaaacgaatttgatacttgcagtaatatatttgccttggaaaacatgtgcttgtccacataatacgtaattttattggtgtgagaaaggtatagataataaatgaaaaaagaactttaggttagcatgtaaataaaagtgtcatactatgtattttattcatttcaacacgaacagaggatgaaaaacttttgttttctgaaaaacaatctgcaaaataattatgacgtgaaataaaaata
gi|7 : acctctagcatccattgtaaaaattctggccaatttaatgaaaaggccaattttaatattggttgattaaagaacattcaaagctgtatcaataacagatggtcatcAAA-TCAAATTGGACAAAAGATGATTGAGGTG---AAGGTCGTTTACTAAAAT--------------AAGGT----GTTTTGA-C-AAAACGAAATTGA--ATCTGCC-TTA------------------------TTAT--------------AC------------A-TAT--GAA-TG-TC-------C-------G-------CATAATACGTAA------TTCCATGG--GT--GTAGAAAAA--------------GTG----T----AAA------T----------TATAAT-------A--A----AAAT--------A-GAA----CTTCAGGTTTG--TA------AA--TTAA--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAG--TTAT-GATGTGAAATAATAACAAATT--CCGATTAAATGTTTA--AACGATGATG-TATTTGATTAAT-GAACACTG----------ATGAATATGGATTAAA------------ATTT---GTCA-TGACTG--CTTTA--C-C-C--CTGAAAA-TGTGT-A-G-TGC--CTGAAA----------TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--AGA-AT-TC-A-GTCGAAA
gi|8 : CTATTATGCCACACTAAGAATTGATCCATAAATATAAAA-TCGAATTGGAAAACAGATGTTTGAGAT----ATGGTCTTTTA-TCAATTTTTGGAATGGCATTGAGAT----ATTTTGA-C-AAAACGAAATTCA--TAATGCCAGTA------------------------CTGT--------------AC------------A-TTT--GCA-TA-TC-------C-------A-------C-------ATAA------T--------------------------------------G----C----A--------T-----------------------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGT--------A--A--ATG---T------------------CCT-----------AC--TGGTG--------------------T--ATT-TA-TTTT---AAAA--ACGAACTGCAAAA------------------------ACA--TT--CTGGATAAATGTTTA--AAAGACGATG-TATTTGATTAAA-GAACACCG----------ATGCTCATGGATCAAAGTGGA-TTTATTGTTT---GTCATTGACTG--ATTTA--C-tggggttaggatgttagaa
gi|9 : -------C-------GTAA------TTTCATGG--GT--TT-GAGAAA--------------G-T----T----A--------CAAATTA----T----T-------A--ATAAAAAA---------A-GAA----CTTTAGATTTG--TA--TGTAAA--TCAA--A--GAG---TC-------------------CTTTCAAAACAAAC--TAATGA------------T------T---TT-TG-TTTTCTGAAAA--ACGATTAGCAAAATAA--TTAT-GACATGAAATAAAAATAAACT--CTGGTTAAATGTATA--AACGATGATG-TATTTGATTAAT-GAACACTG----------ATCCATATGGATCAACGTGGA-TTTATTGTTT---GTCATTGACTC--TTTTA--C-CTC--CTTAAAT-TATATAA-G-TGT--CTGAAAATC---------ACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--CC-T--A-A-AT-TC-A-GTCc
blockSeqs : A T CATTGTAA TA G T G TTAAT CT CTG A C A TTA T G G C C C C CT T A TA T . T TTTATC T G CATA AG AT T C . T A TTC CC TGTT A G AG A CTATACCGATATAGCATGTAACAACTGTAC C AG G A CGCATAATAC CTGTGA TT TT A TAATGAATTACTTCAGTCATTT CG TAAA TAAATTACG C TTTT A AT AT ATT TC AT TT A TGTAT T T TA CT GTCCTCTGTGGATGCTATGTTAA T T CC AATC T GA A TC C AG A A AGATAATGAGGCATGTCA T A AGA GT TT ACCAC TT T A G T TT T G T T G TACATTGTA GAA A TA G T A C G C T AAAA C A GGT A G A TG
blockSeqs : . . . A . . . . A . . . . TA . . . . C . . . . . . T . A . C . ATC GT . G C . A . G TA . . . . A ATATATTTGCCTTGGAAAAC . . . . AGTATAACAC . . . . GGTATAAATTGTAAATG . . T . . A . . TAA . A . C G T C TC . TGCAATATT . . . AG . . A . C TT . A ATGAACACTG C . . AG . CCA . . A . . . T . G T . TACATGTA A . TA . . . . . A . A . . A . . . .
blockSeqs : . . . A . . . . . . . . . A . . . . T . . . . . . C . T . T . A AG . A G . A . . CG . . . . T CTGTACTTGCTTAGTGCA . . . . CACATAATAC . . . . GGTATAGATAATAAATG . . . . . T . . TTA . . . A G T T TC . TGCAATATA . . . AC . . A . C TG . C TGCACACTG T . . GT . CAA . . C . . . G . T A . TAG C . G . . . . . C . A . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . . . . A . . . . . . . . T . T . A AA . T A . T . . CA . . . . A CTATAC . . . . CGCATAATAC . . . . TGTAAATTATAATTT . . . . . G . . TCA . . . A A T T TC . TGAAAAACT . . . TC . . A . C CG . G TGAACACTG T . . AT . CCT . . A . . . G . C T . TAT A . A . . . . . T . C . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . A . . . . . . . . A . A . A GG . A G . A . . TG . . . . A CTATAC . . . . CGATAATAC . . . . GTGTAAATTATAAT . . . . . T . . T . . . A G T T TC . TGCAATATA . . . AT . . A . A TG . A AGAACACCG C . . GC . CCT . . A . . . G . G T . TG A . . . . . . . T . A . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . . . . A . . . . . . . . A . C . A A . A G . A . . CG . . . . T TAATAC . . . . TGC . . . . GTTACAAATTATT . . . . . A . . T . . . A G . C C . TT . . . GT . . . . C T . A TGAACACTG C . . AT . CAT . . A . . . G . G T . TA C . . . . . . . C . A . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . A . . . . . . . . A . T . A . . TG . . . . A CTATAC . . . . CAC . . . . GGCATATATTAT . . . . . T . . T . . . . . . . C . TA . . . AT . . . . . . . A GGA T . . AA . CTC . . A . . . G . T T . TA G . . . . . . . C . A . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . A . . . . . . . . A . . . . . . . . . T TTATAC . . . . AC . . . . GGTAGAAATTAT . . . . . T . . T . . . . . . . . . TT . . . . . . . . . . . . . T . . AT . TCA . . A . . . G . T . . TA A . . . . . . . T . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . . . . . A . . . . . . . . T . . . . . . . . . A CTGTAC . . . . GCAT . . . . . T . . . . . . C . . AT . CCT . . . . . . . . . . . TA A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . C . . . . C . . T . CC . . . . . . . . TA C . . . . . . .
blockSeqs : . . . . . A . C . . A . . . . . . . .
blockSeqs : . .
blockSeqCons : ** ****** ** CGATAATAC********************** TA*** *** TGAACACTG*********** CCN*** TA*************
originalCons : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---A--AATAATCGGTAT--TCATNCGAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGAT----GTTTTGA-C-AAAACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TC-------C-------G-------C-------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGTAAA--T--A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGATG-TATTTGATTAA--GAACACTG----------ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTTA--C-A-C--CTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
finalCons : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---A--AATAATCGGTAT--TCATNCGAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGTG---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGAT----GTTTTGA-C-AAAACGAAATTGA--TACTGCCAGTA------------------------CTAT--------------AC------------A-TAT--GCA-TG-TCCGATAATAC----------------------GTAA------TTTCATGG--GT--GT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA---------A-GAA----CTTTAGGTTTG--TA--TGTAAATA---A--A--GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATAT--ATT-CG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTAT-GACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGATGATG-TATTTGATTAATGAACACTG-----------ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTTACCN---C--CTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAATA-------------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
Alignments
lowQualScore : 11111111 111 1 111111 111111 44444444444444444444444444444444444444444444444444444444444444 2 111111 99999999999999999999999999999999999999999999999999999999999 111111 222222222222 11111111111 11111111111 111111111111111 11 1111 111
lowQualScore : 4 4 44444444 55 4 4 3 99999 88 666 4 4 3 555 3 3 3 3 4 3 3 55 3 3 0 55 2 0 0 66 1 0 444444 1 3 555555 44 77 1 0 1 77 1 3 66666 22 8888 4 4 55 1 0 11111111111111111111111111111111111111111111111111111111111111 4 222222 55 55 4 77777777777777777777777777777777777777777777777777777777777 55 8888 4 4 66 8 8 8 777 1 444444 99 1 66 222222222222 99999999999 4 66 9999 4 0 66 66 5555 66 33 11111111111 0 777 1 2 6 555 66 444 2 66 3 1 3 3 44 4 0 2 3 1 4 3 666666666666666 666 3 55 3 3 3 3 3 2 4 0000 4 4 111 4 4 4 66
lowQualScore : . . ........ .. . . . ..... .. ... . . . ... . . . . . . . .. . . . .. . . . .. . . ...... . . ...... .. .. . . . .. . . ..... .. .... . . .. . . .............................................................. . ...... .. .. . ........................................................... .. .... . . .. . . . ... . ...... .. . .. ............ ........... . .. .... . . .. .. .... .. .. ........... . ... . . . ... .. ... . .. . . . . .. . . . . . . . ............... ... . .. . . . . . . . .... . . ... . . . ..
lowQualScore : 4 0 55555555 00 0 0 6 11111 66 444 0 0 6 000 6 6 6 6 4 6 6 00 6 6 5 55 0 1 2 99 0 1 111111 8 1 222222 44 99 0 4 7 99 0 6 77777 11 5555 0 0 55 4 9 55555555555555555555555555555555555555555555555555555555555555 0 888888 55 55 0 33333333333333333333333333333333333333333333333333333333333 55 5555 0 4 11 9 9 9 888 8 111111 88 1 11 888888888888 33333333333 4 11 9999 4 7 11 11 6666 11 77 77777777777 7 000 5 2 7 444 55 555 9 99 3 2 3 3 66 6 8 3 6 1 5 3 444444444444444 999 3 88 3 3 3 3 3 3 0 2222 0 0 000 0 4 4 11
consensus : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---A--AATAATCGGTAT--TCATNCGAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGT-G---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGA----TGTTTTG-AC-AAAACGAAATTG--ATACTGCCAGTACTAT--------------AC------------ATAT--GCATG-----------------------TCCGCATAATACGTA------ATTTCATGG--G--TGT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA-A-GAACTTTAGGTTTGTA--TGTAAA-T-AAA-GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATA-TA--TTCG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTA-TGACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGA-TG--ATGTATTTGA--TTAA-TGA-ACACTG---ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCATTGACTG--CTTT-ACC-NCCTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
Reference ( family-1299 ) : CCTCTA-GCAT-CCATTGTA--------AAAN-T-TCT-CGCCG-CT-----GAAAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCATTA-ACA-AA--TGGTTA-T-CACCAATCAAATAATCGG--TATTCA-TAAAAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGG------ACCAAT-C---A--AATAATCGGTAT--TCATNCGAAGACG--CACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGT-G---AAGGTCGTTTACTAAAATTTCGGAACGGAATTGAGA----TGTTTTG-AC-AAAACGAAATTG--ATACTGCCAGTACTAT--------------AC------------ATAT--GCATG-----------------------TCCG-ATAATACGTA------ATTTCATGG--G--TGT-GAGAAA--------------G-G----T----A--------T----------T----T-------A--A----AAA-A-GAACTTTAGGTTTGTA--TGTAAA-T-AAA-GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATA-TA--TTCG-TTTTCTGAAAA--ACGATCTGCAAAATAA--CTA-TGACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGA-TG--ATGTATTTGA--TTAA-TGA-ACACTG---ATGCATATGGATCAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--CTTT-ACC-NCCTGAAAA-TATGTAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|1 : CCTCTA-GCAT-CCATTGTA--------AAAT-T-TCT-CACCG-CT-----GAAAAAG--CCAA---TTTTGATA-T-GGTTTGTT-T---CA-AGAA-CATT-GGAAGTTT-TATCCTTA-ACA-AA--TGTTTA-T-CACCAATCAAATAATCAG--TATTCA-TAAAAAAAAAAACACTTGTAAAACATAGCTATTGTGCCACACTAAGGN-----ACCAAT-C---A--AATAATCAGTAT--TCATTAAAAAAAAAACACCTGTAAAACATAGCTATTATGCCACACTAAGGATTAATCCATAATTTTAAAA-TCGAATTGGACAACAGATGATTGAGGT-G---AAGGTCGTTTACTAAAATTTCGGAATGGAATTCAGG----TGTTTTG-AC-AAAACGAAATTG--ATTCTGCCAGTACTAT--------------AC------------ATAT--ACATG-----------------------TCTG-------CATA------ATTTCATAG--G--TGT-AGGAAA--------------A-G----T-------------T----------T----T-------A--A----AAA-A-AACCTTCAGGTTTGTA--TCTAAATT-TAA-GTGGCATTATATTG-G---TTTATTCTTGTTCAAAACGAAC--TGAT------------GATGCAATA-TA--TTCG-TTTTCTGAAAA--ACGATCTGCAAAATAT--TCA-TGACGTGAAATAAAAACAAATT--CTGGTTAAATGTTTA--AACGA-TG--GTGTATTTGA--TT--------CACTG---ATGCGTATGGATTAAAGTGGATTTTATTGTTT---GTCATTGACTG--CTTT-A-C-ACCTGAATA-TGTGCAA-G-TGC--CTGAAAATCACTTGT-TTACTATTATTT-TCACTCAAAA-------T-------TGTTCCG--AC-C--A-A-AT-TC-A-GTCGGAACTAGCTCG-TT---AAAA-AAT-G---G-GT-T-CGGA--TTAGA
gi|10 : CCTCTA-GCAT-CCATTGTACATTGTAAAAAA-T-TCT-CGCCG-CT-----AAAAAAG--CCAA---TTTTGGTA-C-GGGTTGTT-T---AA-AGAA-CATT-CAAAGCTT-TATCCTAA-ACA-AA--TGTTTA-T-CACCAATCAAATAATCAG--TATTCA-TTAAAACACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGA------ATTAAT-
gi|10 : aaCAAAGCT-TTATCCTAAACAAATGTTTATCACCAAT-C---A--AATAATCAGTAT--TCATTAAAACACG--CACCTTTAAAACGTAGCTGTTATGCCACACTAAGAATTAATTCATAATTTTAAAA-TCGAATTAGAC-ACAGATGACTGAGGT-G---AAGGTCGTTTACTAAAATTTCtcataattttaaaatcgaattagacacagatgactgaggtgaaggtcgtttactaaaatttc
gi|11 : aacctctagcatccattgtacattgtaaaaaattctcgccgctaaaaaagccaattttggtacgggttgtttaaagaacattAATGC---A--AATAATCA-TAC--TAAGGTGTACACG--CACCTTTAAAACAAAGCTATTCTGCCACACTAAGGATCAATCCATAATTTTAAAA-TCGAATTTGACTA---ATGACTGAGGT-GTTCAAGGTCGTCTACTAA-------------AATTGAGA----TGTT----------------TCG--ATACTGTCAATACTAT--------------AC------------
gi|12 : attcttcttaatcattcatcaATGAAAA-GAATTGACTGGTG----GCTTATCAA-GA-AG--A-GTAT--GA--TTAAATGA-ACACTG---ATGCAAATGGATTAAAGTGGA-TTTATTGTTT---GTCGTTGACTGTTTTTT-ACC-ACCCTAAAA-TATGTAT-GTTGCTTTTTAAAGTCATTTGT-TTAGTATTATTT-TCACTCAAA---------A------TGTTCCG--AA-C--A-A-AA-TC-A-GTCGAAA-TAGCTTG-TT----TAA-AAT-G---GAGT-T-AGGA--tttgctttgtgcaaggtaaaagtgattgttacataatg
gi|13 : TTTA--AACAA-TT--ATGTGTTTGA--TTAA-TGC-ACACTG---ATGCATATGGATCAAAGTAGA-TTTAACGTTT---TACAGTGATTG--CTGT-ACC-TTCTGAAAA-TACTTAAGG-TTC--AT-AAAGTTACTCAA-TGACTA----TT-TCATTCAAAA-------TAG-----TGTCCCG--CC-CG-A-A-AT-TT-A-TTCGGAACTACATCG-TT---AAAA-AAT-G---G-GG-TACGAA--gtta
gi|14 : CCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAA--CCAA---TTTTGATA-T-GGGTTGTG-T---AA-AGAA-CACC-CAAAGCTT-TATCCTTA-ACA-AA--TGTTTA-T-CACCATTCAAATAAACAG--TATTAATTAAAAAAACG--CACCTTTAAAACATAGCTATTATTCCACACTAAGG------ATTAAT-CCATA--AATgat
gi|15 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-CGCCG-CT-----GAAAAAG--TCAA---TTTTGATA-T-GGGTTGTT-TA--AA-AGAAGCATT-CAAAGATT-TATC-TTA-ACA-AA--T-GTTA-T-CAACAATCAAATAATCAG--TATTCA-TTAAA--ACG--CACC-TTAAAACATAGCTATTATGCCACACTAAGG------ATCAAT-C------CATAATttaaaattgaa
gi|16 : aaA-AC-CTG---ATGCAAATGGATTAAAGTGGA-TTTATTGTTT---GTCGTTGACTG--TTTTAACCACCCTAAAAA-TATGT---T-TGC--TTTAAAGTCATTTGT-TTAGTA-TATTT---A-TCAAAA-------TG------TTTCCCGGAACAA--A-A-AT-TC-A-GTCGGAAATAGCTTG-TTAAAAAAA-AAT-G---G-ATGT-TGGA--ttaaaatcgaa
gi|17 : TGCAT-TGG-TTAAAGTGGAATTTATTGTT----GTCATTGACTG--CTTT-ACA-ACCTGAAAATTGTGTCA-G-AGC--CT-AAAATCACTTGTGCCACTATTATTTGTGAT---AAA-------TAT-----TGTT-CG--AC-G--C-A-ATATC-AGGTCGG-ACTAGCTCG-TT---AGAA-AAT-GGGTG-GT-T-CGGA--gtt
gi|18 : gatGGATCAAAGTACA-TTTATTGCTT---GTTGCTGACTA--CTTT-ACC-TCCTGAAAA-CATGTAC-G-TGC--CGGAAAATTACTTAT-TGGCTAATATTT-TCACTCAAAA-------TA------TGTTCC---AC-CA-A-A-AT-TC-A-GTCGGAATTAGCTCGTTT---CAAA-ATT-G---G-GT-T-CGTA--g
gi|19 : CTTCTAAGCATTCCATTGTC--------AAATATGTCT-CGCCGGCT-----GAAAAG---CCAA---TTTTGGTAAT-GGGTTGTT-T---AT-ATAA-CATCGCAATGCTTCTATCTTTACACA-AA--TGTATATT-CACCAAC--AATATTCGG--TATTCA-TAAAAgttag
gi|2 : gacG-CA-----GAAAAGG--CCAGCTGTTATGATA-T-GGGTTGTTAT---AA-AGAA-TATT-CAAAACTT-TATCATTA-ACA-AA--TGGTCA-T-CACCAACCAAATAATCGT--TGTTCA-TACGGAGACG--CACCTTTAAAACAAAGTTA-AATGCCACACTAGGG------AATAAT-C------CATAATc
gi|2 : t------ACCAAC-C---A--AATAATCGTTGT--TCATACGGAGACG--CACCTTTAAAACAAAGTTAA-ATGCCACACTAGGGAATAATCCATAATTCTAAAA-TCGAATTGGATGACAGATGATTGAAGG-A---AAGGTCGTTTACTAAAA-TTCAGAACCAAATTGAGA----TGTTCTG-AC-AAGACGAAATTG--ATACTGCCAGTACTAT--------------AC------------ATAT--GCATG-----------------------TCCGCATAATACGTA------ATTTTATGG--G--TGT-GAGAAA--------------G-G----T----A--------TAAA-------T----TGTAAATGA--A----AAA-A-GAACCTTAGGTTAGTA--TGTAAA-T-AAATGTG---CCATACTG-G---TTTATTCC-TTTAAAAACAAAC--TGAT------------GATGCAATA-TT--TTTGTTTTTTTGAAAA--A-GATCTGCAAAATAA--GTA-TGACCTGGAA--------------CTGGTTAA----TTA--A---------ATGTATT------------------TA---ATGCAGGAGGGTCAAAGTGGA------TGTTT---GTTATTGACTG--CTTT-ACC-TCCTGAAAA-TATGTAA-G-TGC--CCGAAAATCATTTGT-TGATTATTAGAT-TTACTTAATATACATTGTA------TGTTCTG---C-CTAA-A-AT-TC-A-GTCGGAATCTGCGCG-TT---AAAA-AGTAA---G-GT-T-CGTA--TTtctaaaatcgaattggatgacagatgattgaaggaaaggtcgtttactaaaattcagaaccaaattgagatgttctgacaagacgaaattgatactgccagtactatacatatgcatgtccgcataatacgtaattttatgggtgtgagaaaggtataaattgtaaatgaaaaaagaaccttaggttagtatgtaaataaatgtgccatactggtttattcctttaaaaacaaactgatgatgcaatatttttgtttttttgaaaaagatctgcaaaataagtatgacctggaactggttaattaaatgtatttaatgcaggagggtcaaagtggatgtttgttattgactgctttacctcctgaaaatatgtaagtgcccgaaaatcatttgttgattattagatttacttaatatacattgtatgttctgcctaaaattcagtcggaatctgcgcgttaaaaagtaaggttcgtattttg
gi|20 : tgcagaaaaggccagctgttatgatatgggttgttataaagaatattcaaaactttatcattaacaaatggtcatcTTAACGTTT---TCCAGTGGTTG--ATTT-ACC-TCTTAAAAA-TACGCAA-G-T-----------TCA---GT-TT------------CACTCAAAA-------TACATGTATGTTCCA--CC-C--G-ATAT-TC-A-GTCGGAACTAGCTCG-AT----AAA-AAT-GA--G-GT-G-CGGA--ttg
gi|21 : CCTCTA-GCAT-CC-TTGTA--------AACT-G-TCT-CACTG-CT-----GACAAGG--CCAA---TTTTGATA-T-GGGTTGTT-T---AA-AGGA-CAGT-CAAAGTTT-TATCATCA-ACA-AA--TGGTTA-T-CACAAATCAAATAATattaggg
gi|22 : taaCAAT-C---A--AATAATCAGTAT--TCATTCAAAAACC--CACCTTTAAAACATAGCTACTATGCCATATCAAGGATTAATCAATAATGTTTAAA-TCGAATTAGACAACAGATGATTGAGGT-G---AAGacgtaat
gi|23 : ATGG--G--TGT-GAGAAG--------------G-GCATAT----A--------T----------TA---T-------A--A----ATA-A-AAAGGTTAGGTTATTA--TGTAAA-T-AAATGTT---TCCTACTG-G---TTTATTCCTTTC--AAACGAAC--CGAT------------GAT----T------TTCG-TTATCTTAAA
gi|24 : T-G---AAGGCCGTATACTAAAATTTCGGAATAGAATCCAGG----TGTTTTC-AC-AAAACGAAATTG--GTTCTGCCACTATAAT--------------AC------------ATAT--ACATG-----------------------TCTGCATAATA
gi|25 : aGTTATC-TTA-AA-AGAA-AATT-CAAAGGTT-TGTCATTT-TCA-AA--TGGTTA-T-CACCAATTAAATAATCGT--TATTTATTAAAAAGTC---CACCTTTAGAA
gi|26 : ACTT-TCACTTCAAA-------TA------TGTTC----GC-CTAA-A-AT-TCCA-GTCGGA-CTAGCTCG-TT---AAAACAAT-G---G-Gaag
gi|27 : CCTCTA-ACAT-CCATTGTA--------AAAA-T-TCT-TGCCG-CT-----GAAAAGGCTCCAA---CTTcgttggtgttgga
gi|28 : aaACTG--CTTT-ACA-TCCTGAAAA-TACGTAA-A-TGC--CTGAAAATGACCTg
gi|3 : t-CCATTTTA--------AAAT-T-TCTTCGCCG-CT-----GAAAAGGA-CCTA---TTTTGATA-TCGGGTTATT-TTTAAATAGAA-CTTT-CAAAGCTT-TATCATTA-GCACAACTTGGTTA-TACACCAATCAAATAATCAA--TATTCACTGAAA
gi|3 : AATTTTAAGA-ACGAA-TGGAAAACAGATGATTGAGATGG---AAGGTCTTTTATTAAAATTTTGAACCGGCATTGAGATTGTTATTTTGAAC-AAAAAGAAATTGGAGTACTGCCAGTACTAT--------------ACCG----------ATATA-GCATGTAACAACTGTACACTATGCAGTATCCG-ATAATACGTAACTGTGATTTTATGG--GTTTGT-AAAAAATAATGAATTACTTCA-G----TC---A--------T----------T----T-------ACGA----AAA-ACGAACTTTAGGATTGTGATTGTAAA-T-AAA-GTG---TTATACTG-A----TTATTTC-CTTCAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCG-TTTTCTTGAAACCACGATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACG--CTGATTAAATGTTTA--AACAATTGATATGTAATTGAAGATAA-TGAGGCA-TGTCAATGCATATGAAT--AAATGGA-CC--TTGTTCAGAGCC-TTGA-TG----TT-ACT-CCCTGAAtatttttttaaattttaagaacgaatggaaaacagatgattgagatggaaggtcttttattaaaattttgaaccggcattgagattgttattttgaacaaaaagaaattggagtactgccagtactataccgatatagcatgtaacaactgtacactatgcagtatccgataatacgtaactgtgattttatgggtttgtaaaaaataatgaattacttcagtcatttacgaaaaacgaactttaggattgtgattgtaaataaagtgttatactgattatttccttcaaaacgaaccttaatgagtcctctgtggatgctatgttaatttcgttttcttgaaaccacgatctgcaaaaaaaatctattgacgtgaaataaaaacaaacgctgattaaatgtttaaacaattgatatgtaattgaagataatgaggcatgtcaatgcatatgaataaatggaccttgttcagagccttgatgttactccctgaag
gi|4 : ccattttaaaatttcttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatatttttttaCCTTTA-CCAT-TCATTGTA--------CCAT-C-TCT-CGCCG-CT-----GGAAAGG--CCAA---TTTGGGAA-T-GGGTTGTT-C---AA-AGAA-TATT-CAAAGTTT-TGGCATTA-ACG-AA--TGGTCA-T-CAACAATCAAATACT----------------AAGACG--CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGG------ATTAGT-C---g
gi|4 : aCATTAACG------AATGGT-C---ATCAACAATCAA-------ATACTAAGACG--CACCTTTAAAATAAAGCTATTCTGCCACAGTAAGGATTAGTCTAGAATTTTAAAAATCGAATTGAACAACA--TAATTG------------GTCGTCAACTAAAATTTCGGAACAGAATTGAGA----TGTTTCA-ACGAAAATGAAATCG--ATACCGTCTGTACTGT--------------ACTTGCTTAGTGCAATGTAGGCATA-----------------------TCAGTATAACACGTA------ATTTCATGG--G--TGT-GAGAAA--------------G-G----TAGAAA--------T----------TA---T-------A--A----AAA-tagaattttaaaaatcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|4 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggCCGAAAA--ACGATCCGCAAAATAA--CAA-TGACATGAAATTAAAACAAATT--ATGATTAAATGTTtaaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaccgaaaaacgatccgcaaaataacaatgacatgaaattaaaacaaattatgattaaatgttaa
gi|5 : acctttaccattcattgtaccatctctcgccgctggaaaggccaatttgggaatgggttgttcaaagaatattcaaagttttggcattaacgaatggtcatcaacaatcaaatactaagacgcacctttaaaataaagctattctgccacagtaaggattagtctagaattttaaaaatcgaattgaacaacataattggtcgtcaactaaaatttcggaacagaattgagatgtttcaacgaaaatgaaatcgataccgtctgtactgtacttgcttagtgcaatgtaggcatatcagtataacacgtaatttcatgggtgtgagaaaggtagaaattataaaaataaattacgaaaattttttttaggttggattataaaatatcaatgtctaaacaatctaacgttaattccgagtggcgggggctggggtgttcccttctatgtaaataataatgtcatactggaacaaaCTGTTATGCCACACTAAGAATTAATTCATAATTTTAAAA-TCGAATTAGACA-CAGATGACTGAGGT-G---AAGGTCGTTTACTAAAATTTCGGAATGAAATGCAGG----TATTTTG-AC-AAAACGAAATTG--ATTCTGCCCGTACTAT--------------AC----------------------G-----------------------TCCGCATAATACGTA------ATTTCATGGTTG--TAT-GAGAAG--------------T-G----T----AAATTATAAT----------T----T-------A--A----AAA-T-GAACTTCAGGTTTGTA--TGTAAAAT-TAA-GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATA-TA--TTCA-TTTTCGGAAAA--ACGATCTGCAAAATAT--CTA-GGACGTGAAATAAAAACAAATT--CAGGTTAAAC-------AAT---TG--ATGCAT------------------------------ATGGATTAATGTGGA-TTTATTGTTT---GTCAATGACTG--CTTT-ATC-ACCTGAAAA-TGTACAA-T-TGC--CTGAAAATTACTTGT-GTACTATTATTT-TCACTCAAAA-------TA------TGTTTCG--AC-C--A-A-AT-TC-A-GTCGGAATTAGCTCG-TT---AAAA-ATG-G---G-GT-T-CGGATGTTAGAaa
gi|6 : CCTCTA-GCAT-CCATTGTA--------AAAA-T-TCT-GGCCA-ATTTAATGAAAAGG--CCAA---TTTTAATA-T-TGGTTGAT-T---AA-AGAA-CATT-CAAAGCTG-TATCAATA-ACA-GA--TGGTCA-T-CACCAATCAAATAAT-GGTATATTCG-TACGAAGATG--CACCTTTAAATCAAAACTAGTCTGCTACACTAAGG------ATTAAT-C------CATAATg
gi|6 : a------ACCAAT-C---A--AATAAT-GGTATATTCGTACGAAGATG--CACCTTTAAATCAAAACTAGTCTGCTACACTAAGGATTAATCCATAATTTGAAAA-TTAAATTTCACAACAGATTATTGCGGT-G---AAGGTCGCTTGCTAAAATTTCTGAACGGAATTGAAA----TGTTTTG-AC-AAAACGAATTTG--ATACTTGCAGTAATATATTTGCCTTGGAAAAC------------ATGT--GCTTG-----------------------TCCACATAATACGTA------ATTTTATTG--G--TGT-GAGAAA--------------G-G----T----A--------TAGATAATAAAT----G-------A--A----AAA-A-GAACTTTAGGTTAGCA--TGTAAA-TAAAA-GTG---TCATACTATGTATTTTATTCA-TTTCAACACGAAC--AGAG------------GATGAAAAA-CT--TTTG-TTTTCTGAAAA--ACAATCTGCAAAATAA--TTA-TGACGTGAAATAAAAATAttgaaaattaaatttcacaacagattattgcggtgaaggtcgcttgctaaaatttctgaacggaattgaaatgttttgacaaaacgaatttgatacttgcagtaatatatttgccttggaaaacatgtgcttgtccacataatacgtaattttattggtgtgagaaaggtatagataataaatgaaaaaagaactttaggttagcatgtaaataaaagtgtcatactatgtattttattcatttcaacacgaacagaggatgaaaaacttttgttttctgaaaaacaatctgcaaaataattatgacgtgaaataaaaata
gi|7 : acctctagcatccattgtaaaaattctggccaatttaatgaaaaggccaattttaatattggttgattaaagaacattcaaagctgtatcaataacagatggtcatcAAA-TCAAATTGGACAAAAGATGATTGAGGT-G---AAGGTCGTTTACTAAAAT--------------AAGG----TGTTTTG-AC-AAAACGAAATTG--AATCTGCC-TTATTAT--------------AC------------ATAT--GAATG-----------------------TCCGCATAATACGTA------ATTCCATGG--G--TGTAGAAAAA--------------GTG----T----AAA------T----------TATAAT-------A--A----AAATA-GAACTTCAGGTTTGTA-----AAT-T-AAA-GTG---TCATACTG-G---TTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATA-TA--TTCG-TTTTCTGAAAA--ACGATCTGCAAAATAG--TTA-TGATGTGAAATAATAACAAATT--CCGATTAAATGTTTA--AACGA-TG--ATGTATTTGA--TTAA-TGA-ACACTG---ATGAATATGGATTAAA------------ATTT---GTCA-TGACTG--CTTT-ACC--CCTGAAAA-TGTGT-A-G-TGC--CTGAAA----------TTACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--AC-C--AGA-AT-TC-A-GTCGAAA
gi|8 : CTATTATGCCACACTAAGAATTGATCCATAAATATAAAA-TCGAATTGGAAAACAGATGTTTGAGAT-----ATGGTCTTTTA-TCAATTTTTGGAATGGCATTGAGA----TATTTTG-AC-AAAACGAAATTC--ATAATGCCAGTACTGT--------------AC------------ATTT--GCATA-----------------------TCC-------ACATA------AT--------------------------------------G----C----A--------T-----------------------A--A----AAA-A-GAACTTTAGGTTTGTA--TG-----T-AAA-------------TG----------TCCT-----------AC--TGGT------------G---------TA--TTTA-TTTT---AAAA--ACGAACTGCAAAA------------------------ACA--TT--CTGGATAAATGTTTA--AAAGA-CG--ATGTATTTGA--TTAA-AGA-ACACCG---ATGCTCATGGATCAAAGTGGA-TTTATTGTTT---GTCATTGACTG--ATTT-ACC-tggggttaggatgttagaa
gi|9 : -ATAATACGTA------ATTTCATGG--G--TTT-GAGAAA--------------G-T----T----A--------CAAATTA----T----T-------A--ATAAAAAA-A-GAACTTTAGATTTGTA--TGTAAA-TCAAA-GAG---TC-------------------CTTTCAAAACAAAC--TAAT------------GAT-------T---TTTG-TTTTCTGAAAA--ACGATTAGCAAAATAA--TTA-TGACATGAAATAAAAATAAACT--CTGGTTAAATGTATA--AACGA-TG--ATGTATTTGA--TTAA-TGA-ACACTG---ATCCATATGGATCAACGTGGA-TTTATTGTTT---GTCATTGACTC--TTTT-ACC-TCCTTAAAT-TATATAA-G-TGT--CTGAAAATC---------ACTATTATTT-TCACTCAAAA-------TA------TGTTCCG--CC-T--A-A-AT-TC-A-GTC