lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111
lowQualScore : 33 111 88888888888888888888888 111 11 2 22 44444444444 111 11111 1 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 1 11 222 111 33333 11 1 1 1 333333333333333333333333333333333333333333333333333333 2222 111 111 222 1111 22222222 11111 22 111 222 11 1 1111 111111111 222222222 1111 22222222222222 111 1 3
lowQualScore : 22 777 66666666666666666666666 3 1 111 00 11 3 6 6 66 6 99 6 88 1 6 8 1 8 8 8 77777777777 8 333 0 8 55555 8 4 9 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 33 0 2 33 3 999 999 77777 88 6 3 1 0 5 6 6 444444444444444444444444444444444444444444444444444444 5 1 77 4 4 5 1 5 5 777 22 4 5 2222 5 5 5 5 000 1 6 6 666 6 99 666 7 2 3 6666 55555555 66666 11 22 444 8 88 0 777 8 5 3 11 6 6 6 5 88 8888 5 6 6 6 6 222222222 000000000 77 2222 88888888888888 333 7 77 22 5 5 0 99 6 1
lowQualScore : .. ... ....................... . . ... .. .. . . . .. . .. . .. . . . . . . . ........... . ... . . ..... . . . . .................................................................................................................................... .. . . .. . ... ... ..... .. . . . . . . . ...................................................... . . .. . . . . . . ... .. . . .... . . . . ... . . . ... . .. ... . . . .... ........ ..... .. .. ... . .. . ... . . . .. . . . . .. .... . . . . . ......... ......... .. .... .............. ... . .. .. . . . .. . .
lowQualScore : 55 555 88888888888888888888888 2 7 555 00 77 7 7 7 22 7 22 7 88 7 7 0 8 0 0 0 88888888888 0 666 8 0 66666 0 2 0 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 88 0 5 88 2 000 222 00000 33 7 3 0 0 0 7 7 333333333333333333333333333333333333333333333333333333 7 8 99 0 3 7 1 7 7 333 11 3 7 0000 7 7 7 7 000 0 7 7 888 2 22 333 8 2 0 2222 00000000 66666 66 00 000 0 88 8 666 0 6 8 00 7 7 7 5 33 5555 7 7 7 7 7 777777777 333333333 99 1111 00000000000000 999 1 99 11 7 7 7 22 7 8
consensus : AATCCATCATTNATGCAAGTTGAATAAT---GAT--T----CG--CGATT-------ATTCCNTTTTATT-TTCCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAA--GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTT-AAAAAC--TGAT-AATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTAAACATCCA-TATC-C--A-----GNAANGANAAAACANANTCNNNCNTCNNCTTCGCTTCNTCGNTCGGTATTTACGATCGACCGGGAG----AAA-N-AAAAT----A-----GCTTTCT----ACTTG--------------CCCCC--C-CCCCTTCCCC--TTTTATTTTTNT-GATC-ATTATTTATA-TTTT--TGNTG-GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCA----AT-------GT-----------------A----------TGA--ATA-TTTCGTCAT-CAACAATANAGA--TTCTACGTTACAAGACTT-AGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CNGAA-T-TTTCA-CCTC-AAAA---TTCTGGCT-ATAT-GTC--GAAATATTNCA--AATCTACACTTGTTNAAAACNAAATTGCACAACNAAGCTG-ACATATA-------ATT-AA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A---T--TTTTATTA-TTT-GAAAGACA--A----TATA-TT--AT--C--ATCTT--AA-TCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
Reference ( gi|3 ) : AATCCATCATTATTGCAAGTTGAATAAT---GAT--T----CA--CGATT------CATTCCCTTTTATT-TTCCCAAGCGAAAATATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACAA-TCAT-TTT-AAAAA---TGAT-AATCATT-AT-AATTTCTTTCTC-AACTT-TA--TTTT-TTGACCATCCA-TAT-----------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG----AAA-A-AAAAT----A-----GCTTTCT----AC-----------------CCCCC--C-CCCTTTCCCC--TTTTATTTTTTTTGATT-ACTATTTATAATTTT--TGGTG-GTTTTGGCAAATA-TTTTAATTCAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATACTTTCGTCAT-CAACAATAAAGA--TTTTATGTTACAAGAGTT-AATGCAT-T-TCCTCAACTTTTTGT-ACATGAAAA-CTCAA-T-TTTCA-CCTC-AAAA---TTCTGGCT-ATAT-GTT--GAAATATTTCA--AATCTACACTTGTTTAAAACCAAACTGCACAACAAAGCTG-ACATATG-------ATT-TA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCC-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A---T--TTTTATTA-TT--GAAAGACA--A----TAT--TT--AT--C--ATCTT--AA-TCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTGATAAACTTGACTGGACT
gi|11 : AATCCATCATTTATGCAAGTTGAATACTACAGATTGT----CA--CGATT-------ATTCCCCTTTACT-TTCC--AATGAAAATATTAAGCTTTT-CTAAGTGAA--GACA-AA--TGGCATT-AC-GC-ACATC-GGAC
gi|8 : TCCATCATTA-TGCAAGTTGAATAAT---GAT--TGGTCCG--CTATT-------ATTCCCTTTTA-T-TTCCCTAGTG-AAATATAAAG-CTTT-CTTAGTGAAT-GAAA-AG--GGACAAT-AT-GCTACTTC-GGACAT-GAACAA-TCAT-TTT-GAAAA---GG----ATCATT-AT-GATTTTTTTCTC-AACTT-----TTTT-TTAA-CATCCA-TAT-----------
gi|10 : TTGAATAAT---GAT--T--------------------GTTCCATG--ATTATTCCCAAGTGAAA-TATAAAG-TTT--CTTCGTG----------------CATT-AT-GCTACTTT-GGA----GAA----TCAT-TCT-AAAAA---CGAC----CATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-T
gi|2 : T---GAT--T----CAGCTGATTATAGAGCATTCTATTTTATT-TCCC--AGCGAAA-TATAAAG-TTTT-CTTAGTGAA--GAAA-AG--GAACATT-ACAGATACTTCCGGACATTGTACGACTCAT-TTT-TAAAACAGTGATCAATCATTTATTAATTTCTTTCTCCAACTTCTA--TTTT-TGAATCATTCG-CATTATCCAAAACTGAAAGGACAACACAAATTTCCACATCTCCTTCGTTGCTTCGGTTATTTTCAATGAACGTCCGGAAG----AAA-GTAAAAT----G-----GTTGTCTCACTGC-----------------CCCCCTCC-CCCTTTCCTCCTTTTTATTTTTATGAATT-ATTTTCTAT--TTTT--TGCTTCGTTCTGGCAAATA-TTTTAATAAAAATG-TGATGC-ATT------AT-------G------------------------------GA--ATA--TTCGTCAT-CAACATTAA-GA--TTTTATGTTACAAGAGTT-AATGCAT-T-TCCTCAAATTTTTGT-ACATGAAAA-CTGAA-T-TTTCA-CCTC-AAAA---TTCTGGCT-ATAT-GTTC-GAAATATTTCA--AATC-ACACTTGTGGAAAACAAAATGACA-AACAAAGCTT-ACATATA-------ATT-AA--AAAATA-GCGTG--TTTAACCA---T-AAACTATT-TCATG-T-TAAGATGTTTCCACTTTATTCAACGATTTTGCCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTTGA-C-GG-GTTGATTCCGGTAAA-AC--A---T--TTTTTTTA-TTTCGAAAGACA--ATTACTAT--TT--AT--CATATCTTACAA-TCAGGAAAGACAAAGCTT-GTGTTG-CAATTTT-TTGAGGTTG-GGTCCTATTTTCTGAT-AACTTGACTGGA
gi|1 : CTTTTTATT-T-CCCAAGTGAAA-TATTAAG-TTTTTCTTTATGAA--GAAA-AGCGGGACCTTTAT-GCCACTTC-GGACAT-GAACAA-TCAT-TTTTAAAAA---TGAT----CATT-AT-GATTTCTTTCTC-AACTT-TA--TTTTATTTAACATCCA-TAT-----------GCCAATCTAAAGACTACACAATCTTCCACATCCCTTCATACTTCGGTATTTACAATTGAACGGGTGGAGAAAATA-AAAATTA--AT----GCTTTCT----ACTTAAATTGCCACACCACCCCCC--C-CCCCTTCCCC--TTTTATTTTAT--GATTCATTATT-ATA-TTTT--TGGTG-GTTTTAGCAAATAATTTTAATTAAAATGCTGATGCCATTCACTTCATCCTTTTTGC-----------------AAAATTATATTTGATAATA-TTTCGTCAT-CAACAATAAAGGATTTTTATGTTACACGAGTTTAATGCAT-T-TCCTCA-CTTTTTGTTACATGAAAAACTGAAAT-TTTCAACCTCCAAAA---TGCTGGCTTATAT-GTTCCGAAATATTGCACAAATCTACAGTTGTT-AAAACGAAACTGTACAACAAA--TG-AGTTACGTTTATTAATT-TA--AAAATATGCGTGGTTTTAACCA---T-AAACTATT--CATGC--TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAAC-ATT-TATCCTCAAAAAA--TCCCCT-TTTCACCGGG-GTTGATTTCGGT-AA-AC--AATTT--TTTTATT--TT--GGAAGACA--A----TATA-TTCCAT--CA-ATCTA--AA-TCAGGAA--ACAAAGCTT-GTGTTGCCAATTTTCTTGAGGTTGCGGCCCAATTTTCTCAT-AACTTGACTGGA
gi|4 : TTTATT---CCCAA-CGAAA-TATAAGG-TTTT-CTTAGTGAATAGAAAGAG--GAACATT-AA-GATACTTC-GGACAT-TGACGA-TCAAATTT-AAAAAC--TGA--AACAATT-A---ATT---------AACAT-TAGATTTT-TTGAACATCCACTATCCCAAA-----ATAACGAGACAACACAATCTTCCCACATCTCTGCCTTCGTGCTCGGTATTTCAAGTGAACGTGGAG----AAA-T-AAAATGTTTA-----GCCT-CT----AG-----------------CCCCC--C-C--TTTCCCC--TTTTATTTTTAT-GATC--TTATTT-TATTTTTGTTGTTG-GTTCTGGCAAATA-TTTTAATTAAAA-G-TGATGC-ATT----------------------------------A----------TGA--ATATTTCGGTCATACGAAAA-AGAGA--TTTTATGTTACAAGACGT-ATTG-ATCT-TCCTCAAATTTTTGT-ACATGAAAA-CT-GA-TATTTCA-CCTC-AAAA---TTCTGGCT-ATATCGTC--GAAATATTCC---AATCTACACTTG-TGAAAACCAAAATGCACAACAAAGCTT-ACATATA-------ATTAAA--AAAATATGCGTGTTTTTAACCA---TAAAACTATTATCA------GAGAC-TT--CATTT--TTCAACGATTTT-CCCAACAAATATTTCAACTTTTACATCCTCAAAAAA--TCCCCT-TTGCA-CGGGTTTTGATTTC-GT-AACACTTA---T--TTTT-TTATTT--GAAAGACAATA----TAT--TT--AT--C--ATCTTA-AA-TCAGGAA--ACAAAGC-C-GTGTTG-CAATTTTCTTGAGGTTG----CCTATTTTCTGATAA--TTGACTGGA
gi|12 : G----AAA-T-AAAAT----AATTATGCTTTCT----ACTTG--------------CCACC--CACCCCTTCCCC--TTTTA-TTTTTATGATC-ATTAT
gi|16 : ctttcacatctccttcgtatttcggtattccattgaacgtggaGGCAAATA-TTTTAATTAAAATG-TGATGC-AT-----------------T-----------------A----------TGA--ATA-TTTCGTCAT-CAACAA
gi|5 : AAATG-TGATGC-AATCACTTCAT-------GTTTGCAATATATATATATA----------TGA--ATA-TTTCGTCAT-CAACAATAAAGA--TTTTATATTACAAGAGTT-AATGCAT-T-TTCTCAACTTTTTCT-ACATGAAAA-CTGAA-T-TTTCA-CCTA-AAAA---TTCTGGCT-ATAT-GTC--AAAATATTTTA--AATCTACACTTG-ATAAAACGAAACTACACAACCAAGTTG-ACATTTA-------ATT-TA--AAAAGATGCATG-TTTTAACCATATT-AAGCTATT-TCATGCTATAAGAT-TTTCCA-TT--TTCAACGATTTC-CCC-ACAAA-ATTTCAAC-TTT-TATCCTCAAAAAT--T-CCCCATTCCA-CGGG-TTTAATTTAGGT-AA-AC--A---TTGTTTTAT---TT--GAAAGACA--A----TA---------------------AA-TCAGGAA--AC-AAGCTT-GTGTTG-CA-----------GTTG-GGCCTTATTTTCTCAT-AACTTGACTGGAC
gi|7 : AAATA-T-ATGT-ATTCA--------------T-----------------A----------TGC--ATA-TTTCGTCAA-CAACAATATAGA--TTCAACATTACAAAACTT-AGTGCAT-T-T----------TTCT-ACAAGAAAA-TAGAA-T-TTTCA-CCTT-AAAAAAACCCT------TTT-TTC--AAAATATTACA--AATTTACACTTG-TTAAAACTAAATTGCACAACCAAG-TGTATATATA-------AT
gi|13 : AT-------GC-----------------A----------T-A--ATA-TTTCGTCAA-CAACAGTACAGA--TTCTACATTACAAAACTG-AGTGCAT-TGTC--AAACTTCTTTT-ACCTGAAAA-TATAA-T-TTTCA-CCTC-AAAA---Taaat
gi|6 : atttatGA--TTCTAT--TACAAGACTC-GGTGCAT-T-TTC-CAACTTTTTCT-ACTTGAAAA-TAGAA-T-TTTCA-CCTC-AAAA---TTCCAAAT-ATTT-TTC--ACAATGTTACA--AATTTACACTTATTAAAAATTGAATTGCACAACCAAG-TGTACATATA-------ATA-AAAGAAAAT-TGCATG-ATTTCATTC---T-AAACTGTT-TCATGCT-TAG--------TATAT--TTCAACGATGTC-CAC-ACACA-ATGTTAAC-TTT-TACCCCC--AAAA--C-CCCC-TT
gi|9 : T-TCC-ACAAA-ATTTCATCTTTT--ATCCTCAAAAAAATC-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A---T--TTTT-TTA-TTT-GAAAGACA--A----TATATTT--AT--C--ATCGT--AAATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGTCCTATTTTCTCAT-AACTTGACTGGAC
gi|14 : CCT-TTCCA-TGGG-GTTGATTTCGGT-AA-AC--A---A--TTTTTTTA-TTT-GGAAAACA--A----TATATTC--AT--C--ATCTT--AAATCAGAAA--AAAAAGCTT-GTGTTG-CAATTTTCTTGAGG
gi|15 : ---T--TTTTATT---T--GAAAGACA--A----TAC--AT--ATAGC--ATTTC--AAGTCAGAAA--A--AAACTTAGTGTTG-CAATTGTCTTGAGGTTG-TGCCATCACTTCTCAC-AACTTCACTAAAC
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 1 111 44444444444444444444444 11 11 44444444 11 222 5555555555555555 1111 11111 111 2222222222 111111 222 6666666666666666666666666666666666666 111 11 11 222 0000000000000000000000000000000000 1 111 11 11 111 11 1111 2 2222222222 11 11 1
lowQualScore : 4 444 66666666666666666666666 1 5 99 11 5 5 5 99 5 77 5 66 0 5 6 2 6 6 2 66666666 6 6 6 6 99 6 22 1 222 9999999999999999 1 2222 1 1 99999 22 8 1 555 2 1111111111 7 777777 000 5555555555555555555555555555555555555 8 444 11 11 8 8 8 0 66 33 1 777 8 5 5 8888888888888888888888888888888888 66 5 5 5 6 66 6 66 1 5 5 0 3 0 1 5 5 1 5 5 5 888 5 888 77 1 77 1 7 1 1 1 000 8 55 77 5 77 77 66 6 111 6 2 99 6 3 99 5 5 5 5 22 4444 5 5 5 5 5 77 5 5 5 5555555555 11 66 0 66 5 5 66 0 5
lowQualScore : . ... ....................... . . .. .. . . . .. . .. . .. . . . . . . . ........ . . . . .. . .. . ... ................ . .... . . ..... .. . . ... . .......... . ...... ... ..................................... . ... .. .. . . . . .. .. . ... . . . .................................. .. . . . . .. . .. . . . . . . . . . . . . . ... . ... .. . .. . . . . . ... . .. .. . .. .. .. . ... . . .. . . .. . . . . .. .... . . . . . .. . . . .......... .. .. . .. . . .. . .
lowQualScore : 0 000 88888888888888888888888 0 7 00 11 7 7 7 33 7 99 7 11 1 7 7 2 7 7 2 77777777 7 7 7 7 22 7 66 0 000 0000000000000000 0 2222 0 0 88888 00 0 0 444 2 2222222222 2 666666 000 0000000000000000000000000000000000000 0 000 00 88 0 0 0 8 55 22 0 555 0 7 0 0000000000000000000000000000000000 99 0 0 0 6 99 2 44 1 0 0 2 1 1 0 0 0 0 0 0 0 888 7 666 99 0 99 7 7 0 1 0 000 9 77 99 7 99 99 88 7 777 7 5 88 7 2 22 7 7 7 0 99 6666 0 7 7 7 7 99 2 0 0 6666666666 99 99 0 99 0 0 44 7 7
consensus : AATCCATCATT-ATGCAAGTTGAATAAT---GATTG---C-GC-GATT-AT-------TCCCTT-TTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAACATCCAC--TAT-CC---A-----GT--AANGACAANACACAATCTCNCNTCNNCTTCGC-TTCGTANTTCGGTATTT-CAAT---TGAACGTGG---AGAAANT-AAAAT----A-----GCTTTCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-A-----TTCAC-T------------------ATGTATGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGTT-AAAACNAAACTGCACAACAAA---GCTG-ACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCAT-A---AACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--ATTTTT-TTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTTA-AA-TCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
Reference ( family-12719 ) : AATCCATCATTNATGCAAGTTGAATAAT---GATT----C-GC-GATT-AT-------TCCNTT-TTATTTTCCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAA--GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTAAAAAC--TGAT-AATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTAAACATCCA---TAT-CC---A-----GN--AANGANAAAACANANTCNNNCNTCNNCTTCGC-TTCNTCGNTCGGTATTTACGAT---CGACCG-GG---AGAAAN--AAAAT----A-----GCTTTCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTNT-GA-T-CATTATTTATA-TTTTTGNTG---GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-A-----TTCA---------------------ATGTATGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTCTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CNGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGTTNAAAACNAAATTGCACAACNAA---GCTG-ACAT--AT-AATT-AA--AAAATATGCGTG-TTTTAACCAT-A---AACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--ATTTTTATTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTT--AA-TCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
gi|1 : CTTT-TTATTT-CCCAAGTGAAA-TATTAAG-TTTTTCTTTATGAA--GAAA-AGCGGGACCTTTAT-GCCACTTC-GGACAT-GAACAA-TCAT-TTTTAAAA-----AT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTTATTTAACATCCA---TATGCC---A-----ATCTAAAGACTA--CACAATCT----TCCACATCCC-TTCATACTTCGGTATTTACAAT---TGAACG-GGTGGAGAAAATAAAAATTA--AT----GCTTTCT-ACTTAAATTGCCACACCACCCCCCC-CCCC---TTCCCC--TTTTATTTT-AT-GA-TTCATTATT-ATA-TTTTTGGTG---GTTTTAGCAAATAATTTTAATTAAAATGCTGATGCCA-----TTCACTTCATCCTTTTTGCAAAATTATATTTGATAATA-TTTCG-TCAT-CAACAATAAAGGATTTTTATGTTACACGAGTTTAATGCAT-T-TCCTCA-CTTTTTGTTACATGAAAAACTGAAATTTTCAACCTCCAAAA---TGCTGGCTTATAT-G-TTCCGAAATATTGCACAAATCTACAGTTGTT-AAAACGAAACTGTACAACAAATGAGTT--ACGTTTATTAATT-TA--AAAATATGCGTGGTTTTAACCAT-A---AACTATT--CATGCT--AAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAAC-ATT-TATCCTCAAAAAA--TCCCCT-TTTCACCGGG-GTTGATTTCGGT-AA-AC--AATTTTTTTATTTT-GGAAGACAATATA----T-TCCATCA-ATCTA--AA-TCAGGAA--ACAAAGCTT-GTGTTGCCAATTTTCTTGAGGTTGCGGCCCAATTTTCTCAT-AACTTGACTGGA
gi|10 : TTGAATAAT---GATT--------------GT-------TCCATGATTATT--CCCAAGTGAAA-TATAAAG-TTT--CTTCGTG----------------CATT-AT-GCTACTTT-GGA----GAA----TCAT-TCTAAAAAC-------GACCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-T
gi|11 : AATCCATCATTTATGCAAGTTGAATACTACAGATTGT--C-AC-GATT-AT-------TCCCCT-TTACTTT-CCAATGAAAA-TATTAAGCTTTT-CTAAGTGAA--GACA-AA--TGGCATT-AC-GC-ACATC-GGAC
gi|12 : C-TTCGTATTTCGGTATT--CCAT---TGAACGTGG---AGAAAT--AAAAT----AATTATGCTTTCT-ACTTG--------------CCACCCACCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTAT
gi|13 : ctttcacatctc-A-----TTTAT--------------------ATGCAT-A--ATA-TTTCG-TCAA-CAACAGTACAGA--TTCTACATTACAAAA-CTGAGTGCAT-TGTC--AAACTTCTTTT-ACCTGAAAA-TATAA-TTTTCA-CCTC-AAAA---T
gi|14 : CCT-TTCCA-TGGG-GTTGATTTCGGT-AA-AC--AATTTTTTTA-TTT-GGAAAACAATATA----T-TC-ATC--ATCTTA-AA-TCAGAAA--AAAAAGCTT-GTGTTG-CAATTTTCTTGAGG
gi|15 : TTTT-TTA-TTT-GAAAGACAATACA----TAT--AGC--ATTTC--AAGTCAGAAA--A--AAACTTAGTGTTG-CAATTGTCTTGAGGTTG-TGCCATCACTTCTCAC-AACTTCACTAAAC
gi|16 : GGCAAATA-TTTTAATTAAAATG-TGATGC-A-----T---------------------------TATGA--ATA-TTTCG-TCAT-CAACAA
gi|2 : T---GATT----CAGCTGATT-ATAGAGCATTCTATT-TTATTTCCC--AGCGAAA-TATAAAG-TTTT-CTTAGTGAA--GAAA-AG--GAACATT-ACAGATACTTCCGGACATTGTACGACTCAT-TTTTAAAACAGTGATCAATCATTTATTAATTTCTTTCTCCAACTTCTA--TTTT-TGAATCATTCGCATTAT-CC---AAAACTGA--AAGGACAACACAAATTTCCACATCTCCTTCGT-TGCTTCGGT---TATTTTCAATGAACGTCCG-GA---AGAAAGT-AAAAT----G-----GTTGTCTCACT-G--------------CCCCCC-TCCCCCTTTCCTCCTTTTTATTTTTAT-GAAT-TATTTTCTAT--TTTTTGCTTC--GTTCTGGCAAATA-TTTTAATAAAAATG-TGATGC-A-----TT-----------------------ATG---GA--ATA-TT-CG-TCAT-CAACATTA-AGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAAATTTTTGT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-GTT--CGAAATATTTCA--AATC-ACACTTGTGGAAAACAAAATGACA-AACAAA---GCTT-ACAT--AT-AATT-AA--AAAATA-GCGTG--TTTAACCAT-A---AACTATT-TCATG-T-TAAGATGTTTCCACTTTATTCAACGATTTTGCCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTTGA-C-GG-GTTGATTCCGGTAAA-AC--ATTTTTTTTA-TTTCGAAAGACAAT-TACTATT-T--ATCATATCTTACAA-TCAGGAAAGACAAAGCTT-GTGTTG-CAATTTT-TTGAGGTTG-GGTCCTATTTTCTGAT-AACTTGACTGGA
gi|3 : AATCCATCATTATTGCAAGTTGAATAAT---GATT----C-AC-GATTCAT-------TCCCTT-TTATTTTCCCAAGCGAAAATATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACAA-TCAT-TTTAAAAA---TGAT-AATCATT-AT-AATTTCTTTCTC-AACTT-TA--TTTT-TTGACCATCCA---TAT------------GN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN---NNNNNN-NN---NGAAAA--AAAAT----A-----GCTTTCT-AC-----------------CCCCCC-CCCT---TTCCCC--TTTTATTTTTTTTGA-T-TACTATTTATAATTTTTGGTG---GTTTTGGCAAATA-TTTTAATTCAAATG-TGATGC-A-----TTCACTTC-----------------ATGTATGA--ATACTTTCG-TCAT-CAACAATAAAGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAACTTTTTGT-ACATGAAAA-CTCAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--TGAAATATTTCA--AATCTACACTTGTTTAAAACCAAACTGCACAACAAA---GCTG-ACAT--AT-GATT-TA--AAAATATGCGTG-TTTTAACCAT-A---AACTATT-TCATGCC-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--ATTTTTATTA--TT-GAAAGACAATAT-----T-T--ATC--ATCTT--AA-TCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTGATAAACTTGACTGGAC
gi|4 : T-TTATT--CCCAA-CGAAA-TATAAGG-TTTT-CTTAGTGAATAGAAAGAG--GAACATT-AA-GATACTTC-GGACAT-TGACGA-TCAAATTTAAAAAC--TGA--AACAATT-A---ATT---------AACAT-TAGATTTT-TTGAACATCCAC--TAT-CCCAAA-----AT--AACGAGACAACACAATCTTCCCACATCTCTGCCTTCGT-GCTCGGTATTT-CAAG---TGAACGTGG---AGAAAT--AAAATGTTTA-----GCCT-CT-A---G--------------CCCCCC-CT-----TTCCCC--TTTTATTTTTAT-GA-T-C-TTATTT-TA-TTTTTGTTGTTGGTTCTGGCAAATA-TTTTAATTAAAA-G-TGATGC-A-----TT---------------------------ATGA--ATA-TTTCGGTCATACGAAAA-AGAGA--TTTTATGTTACAAGA-CGTATTG-ATCT-TCCTCAAATTTTTGT-ACATGAAAA-CTGAT-ATTTCA-CCTC-AAAA---TTCTGGCT-ATATCG-T--CGAAATATTCC---AATCTACACTTG-TGAAAACCAAAATGCACAACAAA---GCTT-ACAT--AT-AATTAAA--AAAATATGCGTGTTTTTAACCATAA---AACTATTATCA------GAGAC-TT--CATTT--TTCAACGATTTT-CCCAACAAATATTTCAACTTTTACATCCTCAAAAAA--TCCCCT-TTGCA-CGGGTTTTGATTTC-GT-AACACTTATTTTT-TTA-TTT-GAAAGACAATATAT---T-T--ATC--ATCTTA-AA-TCAGGAA--ACAAAGC-C-GTGTTG-CAATTTTCTTGAGGTTG----CCTATTTTCTGAT-AA-TTGACTGGAt
gi|5 : AAATG-TGATGC-AATCACTTCATGTTTGCAATATATAT-----ATATATGA--ATA-TTTCG-TCAT-CAACAATAAAGA--TTTTATATTACAAGA-GTTAATGCAT-T-TTCTCAACTTTTTCT-ACATGAAAA-CTGAA-TTTTCA-CCTA-AAAA---TTCTGGCT-ATAT-G-T--CAAAATATTTTA--AATCTACACTTGAT-AAAACGAAACTACACAACCAA---GTTG-ACAT--TT-AATT-TA--AAAAGATGCATG-TTTTAACCAT-ATTAAGCTATT-TCATGCTATAAGAT-TTTCCATTT--T-CAACGATTTC-CCC-ACAAA-ATTTCAACTTTT--ATCCTCAAAAAT--T-CCCCATTCCA-CGGG-TTTAATTTAGGT-AA-AC--ATTGTT-TTA-TTT-GAAAGACAATA-----------------------AA-TCAGGAA--ACAA-GCTT-GTGTTG-CA-----------GTTG-GGCCTTATTTTCTCAT-AACTTGACTGGAC
gi|6 : GA--TTCTA--TTACAAGA-CTCGGTGCAT-T-TTC-CAACTTTTTCT-ACTTGAAAA-TAGAA-TTTTCA-CCTC-AAAA---TTCCAAAT-ATTT-T-T--CACAATGTTACA--AATTTACACTTATTAAAAATTGAATTGCACAACCAA---G-TGTACAT--AT-AATA-AAAGAAAAT-TGCATG-ATTTCATTCT-A---AACTGTT-TCATGCT-TAG--------TATAT--TTCAACGATGTC-CAC-ACACA-ATGTTAAC-TTT-TACCCCC--AAAA--C-CCCC-TT
gi|7 : AAATA-T-ATGT-A-----TTCA------------------------TATGC--ATA-TTTCG-TCAA-CAACAATATAGA--TTCAACATTACAAAA-CTTAGTGCAT-T-T----------TTCT-ACAAGAAAA-TAGAA-TTTTCA-CCTT-AAAAAAACCCT------TTT-T-T--CAAAATATTACA--AATTTACACTTGTT-AAAACTAAATTGCACAACCAA---G-TGTATAT--AT-AA-T-AA--A
gi|8 : TCCATCATT-ATGCAAGTTGAATAAT---GATTGGTCC-GC-TATT-AT-------TCCCTT-TTATTT-CCCTAGTGAAA-TATAAAG-CTTT-CTTAGTGAAT-GAAA-AG--GGACAAT-AT-GCTACTTC-GGACAT-GAACAA-TCAT-TTTGAAAA----G---GATCATT-AT-GATTTTTTTCTC-AACTT-T---TTTT-T--AACATCCA---TAT-t
gi|9 : T-TCC-ACAAA-ATTTCATCTTTT--ATCCTCAAAAAAATC-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--ATTTTT-TTA-TTT-GAAAGACAATATA----T-TT-ATC--ATCGT--AAATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGTCCTATTTTCTCAT-AACTTGACTGGAC
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 1 1 111 3333 22 44444444 1 6666666666666666666666 111 2222222222222222 1 111111 11 4444444444444 66666666666666666 111 11 11 333 111111111111111111111111111 111 111 11 11 111 1 1111 1111 2222222222
lowQualScore : 3 3 444 9999 66 8 1 77 11 5 5 5 11 5 77 5 66 0 5 6 2 6 6 1 66666666 6 6 6 6 99 6 0 8 2222222222222222222222 1 222 5 3333333333333333 7777 2 8 6 333 888888 77 4444444444444 0 8 11111111111111111 8 444 11 0 8 8 8 0 66 33 1 222 8 5 5 222222222222222222222222222 66 5 5 5 6 66 6 66 1 5 5 0 3 0 1 5 5 0 5 5 5 888 5 888 77 1 77 555 1 0 1 000 8 55 77 5 77 99 66 111 6 6 2 99 6 3 1 99 5 5 5 2 55 4444 5 5 5 5 5 6666 5 5 5 0 5555555555 66 5 66 5 5 66 0 5
lowQualScore : . . ... .... .. . . .. .. . . . .. . .. . .. . . . . . . . ........ . . . . .. . . . ...................... . ... . ................ .... . . . ... ...... .. ............. . . ................. . ... .. . . . . . .. .. . ... . . . ........................... .. . . . . .. . .. . . . . . . . . . . . . . ... . ... .. . .. ... . . . ... . .. .. . .. .. .. ... . . . .. . . . .. . . . . .. .... . . . . . .... . . . . .......... .. . .. . . .. . .
lowQualScore : 3 3 000 2222 00 0 7 11 11 7 7 7 11 7 99 7 11 1 7 7 2 7 7 0 77777777 7 7 7 7 22 7 6 0 0000000000000000000000 0 222 2 4444444444444444 8888 8 0 0 444 000000 44 0000000000000 8 0 22222222222222222 0 000 00 8 0 0 0 8 55 22 0 888 0 7 0 222222222222222222222222222 99 0 0 0 6 99 2 44 1 0 0 2 1 1 0 0 0 8 0 0 0 888 7 666 99 0 99 000 0 4 3 000 9 77 99 7 77 22 88 777 7 7 5 88 7 2 7 22 7 7 7 0 99 6666 0 7 7 7 7 0000 0 0 0 1 6666666666 99 0 99 0 0 44 7 7
consensus : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT-CC---A-----GT--AANGACANNACACAATCTCC-CATCNNCTTCGC-TTCGTACTTCGGT-ATTT-CAATTGAACG--T---GGAGAAAATAAAA--T----AAT---GCTTTCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTC-----------------ATGTATGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTG-ACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
Reference ( family-12719 ) : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTG---CGCGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT-CC---A-----GT--AANGACAANACACAATCTCN-CNTCNNCTTCGC-TTCGTANTTCGGT-ATTT-CAATTGAACG--T---GGAGAAANTAAAA--T----A-----GCTTTCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACT-------------------ATGTATGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTG-ACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
gi|1 : CTTTTTATTT-CCCAAGTGAAA-TATTAAG-TTTTTCTTTATGAA--GAAA-AGCGGGACCTTTAT-GCCACTTC-GGACAT-GAACAA-TCAT-TTTTAAAA-----AT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTTATTTAA-CATCCA---TATGCC---A-----ATCTAAAGAC--TACACAATCT-----TCCACATCCC-TTCATACTTCGGT-ATTTACAATTGAACGGGT---GGAGAAAATAAAAATT----AAT---GCTTTCT-ACTTAAATTGCCACACCACCCCCCC-CCCC---TTCCCC--TTTTATTTT-AT-GA-TTCATTATT-ATA-TTTTTGGTG---GTTTTAGCAAATAATTTTAATTAAAATGCTGATGCCATTCACTTCATCCTTTTTGCAAAATTATATTTGATAATA-TTTCG-TCAT-CAACAATAAAGGATTTTTATGTTACACGAGTTTAATGCAT-T-TCCTCA-CTTTTTGTTACATGAAAAACTGAAATTTTCAACCTCCAAAA---TGCTGGCTTATAT-G-TTCCGAAATATTGCACAAATCTACAGTTGT-T-AAAACGAAACTGTACAACAAATGAGTT--ACGTTTATTAATT-TA--AAAATATGCGTGGTTTTAACCA---T-AAACTATT--CATGCT--AAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAAC-ATT-TATCCTCAAAAAA--TCCCCT-TTTCACCGGG-GTTGATTTCGGT-AA-ACA-A-TTTTT-TTATTTT-GGAAGACAATATA----T-TCCATC--AATCTA-AATCAGGAA--ACAAAGCTT-GTGTTGCCAATTTTCTTGAGGTTGCGGCCCAATTTTCTCAT-AACTTGACTGGA
gi|10 : TTGAATAAT---GATTGTTCCATGATT-ATTCCC------------AAGTGAAA-TATAAAG-TTT--CTTCGTG----------------CATT-AT-GCTACTTT-GGA----GAA----TCAT-TCTAAAAAC-------GACCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-T
gi|11 : AATCCATCATTTAT-GCAAGTTGAATACTACAGATTGT--CACGATT-ATTCCCCTTTACTT-TCCAATGAAAA-TATTAAGCTTTT-CTAAGTGAA--GACA-AA--TGGCATT-AC-GC-ACATC-GGAC
gi|12 : TTTCA-CATC----TC-C-TTCGTATTTCGGT-ATTC-CA-TTGAACG--T---GGAGAAA-TAAAA--T----AATTATGCTTTCT-ACTTG--------------CCACCCACCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTAT
gi|13 : c-ATTTA-T-------------------ATGCAT-A--ATA-TTTCG-TCAA-CAACAGTACAGA--TTCTACATTACAAAA-CTGAGTGCAT-TGTC--AAACTTCTTTT-ACCTGAAAA-TATAA-TTTTCA-CCTC-AAAA---T
gi|14 : CCT-TTCCA-TGGG-GTTGATTTCGGT-AA-AC--AATTTTT-TTA-TTT-GGAAAACAATATA----T-TC-ATC--ATCTTA-AATCAGAAA--AAAAAGCTT-GTGTTG-CAATTTTCTTGAGG
gi|15 : TTTT-TTA-TTT-GAAAGACAATACA----TAT--AGC--ATTTCA-AGTCAGAAA----AAAACTTAGTGTTG-CAATTGTCTTGAGGTTG-TGCCATCACTTCTCAC-AACTTCACTAAAC
gi|16 : GGCAAATA-TTTTAATTAAAATG-TGATGC-AT---------------------------TATGA--ATA-TTTCG-TCAT-CAACAA
gi|2 : T---GATTA---TA-GAGC-ATTCTATTTTATTT-CCCA-GCGAAA-TATAAAG-TTTT-CTTAGTGAA--GAAA-AG--GAACATT-ACAGATACTTCCGGACATTGTACGACTCAT-TTTTAAAACAGTGATCAATCATTTATTAATTTCTTTCTCCAACTTCTA--TTTT-T-GAATCATTCGCATTAT-CC---AAAACTGA--AAGGACAACACA-AATTTCCACATCTCCTTCGT-TGC----TTCGGTTATTTTCAAT-GAACG--TCCGGAAGAAAGTAAAA--T----G-----GTTGTCTCACT-G--------------CCCCCC-TCCCCCTTTCCTCCTTTTTATTTTTAT-GAAT-TATTTTCTAT--TTTTTGCTTC--GTTCTGGCAAATA-TTTTAATAAAAATG-TGATGC-ATT-----------------------ATG---GA--ATA-TT-CG-TCAT-CAACATTA-AGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAAATTTTTGT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-GTT--CGAAATATTTCA--AATC-ACACTTGTGG-AAAACAAAATGACA-AACAAA---GCTT-ACAT--AT-AATT-AA--AAAATA-GCGTG--TTTAACCA---T-AAACTATT-TCATG-T-TAAGATGTTTCCACTTTATTCAACGATTTTGCCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTTGA-C-GG-GTTGATTCCGGTAAA-AC--ATTTTTT-TTA-TTTCGAAAGACAAT-TACTATT-T--ATCATATCTTACAATCAGGAAAGACAAAGCTT-GTGTTG-CAATTTT-TTGAGGTTG-GGTCCTATTTTCTGAT-AACTTGACTGGA
gi|3 : tgattcagcAATCCATCATT-ATTGCAAGTTGAATAAT---GATT----CACGATTCATTCCCTTTTATTTTCCCAAGCGAAAATATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACAA-TCAT-TTTAAAAA---TGAT-AATCATT-AT-AATTTCTTTCTC-AACTT-TA--TTTT-TTGAC-CATCCA---TAT------------GN--NNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNN-NNNN-NNNNNNNNNN--N---NNNGAAAA-AAAA--T----A-----GCTTTCT-AC-----------------CCCCCC-CCCT---TTCCCC--TTTTATTTTTTTTGA-T-TACTATTTATAATTTTTGGTG---GTTTTGGCAAATA-TTTTAATTCAAATG-TGATGC-ATTCACTTC-----------------ATGTATGA--ATACTTTCG-TCAT-CAACAATAAAGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAACTTTTTGT-ACATGAAAA-CTCAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--TGAAATATTTCA--AATCTACACTTGT-TTAAAACCAAACTGCACAACAAA---GCTG-ACAT--AT-GATT-TA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCC-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTTATTA--TT-GAAAGACAATAT-----T-T--ATC--ATCTT--AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTGATAAACTTGACTGGAC
gi|4 : TTTATT--CCCAA-CGAAA-TATAAGG-TTTT-CTTAGTGAATAGAAAGAG--GAACATT-AA-GATACTTC-GGACAT-TGACGA-TCAAATTTAAAAAC--TGA--AACAATT-A---ATT---------AACAT-TAGATTTT-TTGAA-CATCCAC--TAT-CCCAAA-----AT--AACGAGACAACACAATCTTC-CCACATCTCTGCCTTCGTGCT-CGGT-ATTT-CAAGTGAACG--T---GGAGAAA-TAAAA--TGTTTA-----GCCT-CT-A---G--------------CCCCCC-CT-----TTCCCC--TTTTATTTTTAT-GA-T-C-TTATTT-TA-TTTTTGTTGTTGGTTCTGGCAAATA-TTTTAATTAAAA-G-TGATGC-ATT---------------------------ATGA--ATA-TTTCGGTCATACGAAAA-AGAGA--TTTTATGTTACAAGA-CGTATTG-ATCT-TCCTCAAATTTTTGT-ACATGAAAA-CTGAT-ATTTCA-CCTC-AAAA---TTCTGGCT-ATATCG-T--CGAAATATTCC---AATCTACACTTGT-G-AAAACCAAAATGCACAACAAA---GCTT-ACAT--AT-AATTAAA--AAAATATGCGTGTTTTTAACCA---TAAAACTATTATCA------GAGAC-TT--CATTT--TTCAACGATTTT-CCCAACAAATATTTCAACTTTTACATCCTCAAAAAA--TCCCCT-TTGCA-CGGGTTTTGATTTC-GT-AACACTTA-TTTTT-TTA-TTT-GAAAGACAATATAT---T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGC-C-GTGTTG-CAATTTTCTTGAGGTTG----CCTATTTTCTGAT-AA-TTGACTGGAt
gi|5 : AAATG-TGATGC-AATCACTTCATGTTTGCAATATATATATATATGA--ATA-TTTCG-TCAT-CAACAATAAAGA--TTTTATATTACAAGA-GTTAATGCAT-T-TTCTCAACTTTTTCT-ACATGAAAA-CTGAA-TTTTCA-CCTA-AAAA---TTCTGGCT-ATAT-G-T--CAAAATATTTTA--AATCTACACTTGA-T-AAAACGAAACTACACAACCAA---GTTG-ACAT--TT-AATT-TA--AAAAGATGCATG-TTTTAACCATATT-AAGCTATT-TCATGCTATAAGAT-TTTCCA-TT--TTCAACGATTTC-CCC-ACAAA-ATTTCAAC-TTT-TATCCTCAAAAAT--T-CCCCATTCCA-CGGG-TTTAATTTAGGT-AA-AC--A-TTGTT-TTA-TTT-GAAAGACAA----------------------TA-AATCAGGAA--AC-AAGCTT-GTGTTG-CA-----------GTTG-GGCCTTATTTTCTCAT-AACTTGACTGGAC
gi|6 : GA--TTCTA--TTACAAGA-CTCGGTGCAT-T-TTC-CAACTTTTTCT-ACTTGAAAA-TAGAA-TTTTCA-CCTC-AAAA---TTCCAAAT-ATTT-T-T--CACAATGTTACA--AATTTACACTTAT-TAAAAATTGAATTGCACAACCAA---G-TGTACAT--AT-AATA-AAAGAAAAT-TGCATG-ATTTCATTC---T-AAACTGTT-TCATGCT-TAG--------TATAT--TTCAACGATGTC-CAC-ACACA-ATGTTAAC-TTT-TACCCCC--AAAA--C-CCCC-TT
gi|7 : AAATA-T-ATGT-ATTCA------------------------TATGC--ATA-TTTCG-TCAA-CAACAATATAGA--TTCAACATTACAAAA-CTTAGTGCAT-T-T----------TTCT-ACAAGAAAA-TAGAA-TTTTCA-CCTT-AAAAAAACCCT------TTT-T-T--CAAAATATTACA--AATTTACACTTGT-T-AAAACTAAATTGCACAACCAA---G-TGTATAT--AT-AAT
gi|8 : TCCATCATT-AT-GCAAGTTGAATAAT---GATTGGTCCGCTATT-ATTCCCTTTTATTT-CCCTAGTGAAA-TATAAAG-CTTT-CTTAGTGAAT-GAAA-AG--GGACAAT-AT-GCTACTTC-GGACAT-GAACAA-TCAT-TTTGAAAA----G---GATCATT-AT-GATTTTTTTCTC-AACTT-T---TTTT-T--AA-CATCCA---TAT-aaat
gi|9 : T-TCC-ACAAA-ATTTCATCTTTT--ATCCTCAAAAAAATC-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-TT-ATC--ATCGTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGTCCTATTTTCTCAT-AACTTGACTGGAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1 1 111 1111 22 44444444 1 6666666666666666666666 111 1 1 2222 1 111111 11 6666666666666666666666666666666666666666 111 11 11 333 000000000000000000000000000000000000000000000 111 111 11 11 111 1 1111 1111 2222222222
lowQualScore : 3 3 777 7777 8 1 77 11 5 5 5 11 5 77 5 66 0 5 6 2 6 6 1 66666666 6 6 6 6 99 6 0 8 2222222222222222222222 1 111 5 0 0 6666 8 2 0 2 8 6 333 888888 44 3333333333333333333333333333333333333333 8 444 11 0 8 8 8 0 66 33 1 222 8 5 5 111111111111111111111111111111111111111111111 66 5 5 5 6 66 6 66 1 5 5 0 3 0 1 5 5 0 5 5 5 888 5 888 77 1 77 555 1 0 1 000 8 55 77 5 77 99 66 111 6 6 2 99 6 3 1 99 5 5 5 2 55 4444 5 5 5 5 5 6666 5 5 5 0 5555555555 66 5 66 5 5 66 0 5
lowQualScore : . . ... .... . . .. .. . . . .. . .. . .. . . . . . . . ........ . . . . .. . . . ...................... . ... . . . .... . . . . . . ... ...... .. ........................................ . ... .. . . . . . .. .. . ... . . . ............................................. .. . . . . .. . .. . . . . . . . . . . . . . ... . ... .. . .. ... . . . ... . .. .. . .. .. .. ... . . . .. . . . .. . . . . .. .... . . . . . .... . . . . .......... .. . .. . . .. . .
lowQualScore : 3 3 555 2222 0 7 11 11 7 7 7 11 7 99 7 11 1 7 7 2 7 7 0 77777777 7 7 7 7 22 7 6 0 0000000000000000000000 0 222 2 0 0 0000 0 8 4 8 0 0 444 000000 44 0000000000000000000000000000000000000000 0 000 00 8 0 0 0 8 55 22 0 888 0 7 7 111111111111111111111111111111111111111111111 99 0 0 0 6 99 2 44 1 0 0 2 1 1 0 0 0 8 0 0 0 888 7 666 99 0 99 000 0 4 3 000 9 77 99 7 77 22 88 777 7 7 5 88 7 2 7 22 7 7 7 0 99 6666 0 7 7 7 7 0000 0 0 0 1 6666666666 99 0 99 0 0 44 7 7
consensus : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT-CC---A-----GT--AANGACANNACACAATCT-CC-CATCNCCTTCGC-TTCGTGCTTCGGT-ATTT-CAATTGAACG--T---GGAGAAAATAAAA--TAAT---GCTT----TCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTG-ACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
Reference ( family-12719 ) : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT-CC---A-----GT--AANGACANNACACAATCT-CC-CATCNNCTTCGC-TTCGTACTTCGGT-ATTT-CAATTGAACG--T---GGAGAAAATAAAA--TAAT---GCTT----TCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTG-ACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
gi|1 : CTTTTTATTT-CCCAAGTGAAA-TATTAAG-TTTTTCTTTATGAA--GAAA-AGCGGGACCTTTAT-GCCACTTC-GGACAT-GAACAA-TCAT-TTTTAAAA-----AT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTTATTTAA-CATCCA---TATGCC---A-----ATCTAAAGAC--TACACAATCT-TC-CA----CATCCC-TTCATACTTCGGT-ATTTACAATTGAACGGGT---GGAGAAAATAAAAATTAAT---GCTT----TCT-ACTTAAATTGCCACACCACCCCCCC-CCCC---TTCCCC--TTTTATTTT-AT-GA-TTCATTATT-ATA-TTTTTGGTG---GTTTTAGCAAATAATTTTAATTAAAATGCTGATGCCATTCACTTCATCCTTTTTGC-----------------AAAATTATATTTGATAATA-TTTCG-TCAT-CAACAATAAAGGATTTTTATGTTACACGAGTTTAATGCAT-T-TCCTCA-CTTTTTGTTACATGAAAAACTGAAATTTTCAACCTCCAAAA---TGCTGGCTTATAT-G-TTCCGAAATATTGCACAAATCTACAGTTGT-T-AAAACGAAACTGTACAACAAATGAGTT--ACGTTTATTAATT-TA--AAAATATGCGTGGTTTTAACCA---T-AAACTATT--CATGCT--AAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAAC-ATT-TATCCTCAAAAAA--TCCCCT-TTTCACCGGG-GTTGATTTCGGT-AA-ACA-A-TTTTT-TTATTTT-GGAAGACAATATA----T-TCCATC--AATCTA-AATCAGGAA--ACAAAGCTT-GTGTTGCCAATTTTCTTGAGGTTGCGGCCCAATTTTCTCAT-AACTTGACTGGA
gi|10 : TTGAATAAT---GATTGTTCCATGATT-ATTCCC------------AAGTGAAA-TATAAAG-TTT--CTTCGTG----------------CATT-AT-GCTACTTT-GGA----GAA----TCAT-TCTAAAAAC-------GACCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-T
gi|11 : AATCCATCATTTAT-GCAAGTTGAATACTACAGATTGT--CACGATT-ATTCCCCTTTACTT-TCCAATGAAAA-TATTAAGCTTTT-CTAAGTGAA--GACA-AA--TGGCATT-AC-GC-ACATC-GGAC
gi|12 : C-TTCGTATTTCGGT-ATTC-CA-TTGAACG--T---GGAGAAA-TAAAA--TAATTATGCTT----TCT-ACTTG--------------CCACCCACCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTAT
gi|13 : ctttcacatctcAT-------GC-----------------A----------T-A--ATA-TTTCG-TCAA-CAACAGTACAGA--TTCTACATTACAAAA-CTGAGTGCAT-TGTC--AAACTTCTTTT-ACCTGAAAA-TATAA-TTTTCA-CCTC-AAAA---T
gi|14 : atttatCCT-TTCCA-TGGG-GTTGATTTCGGT-AA-AC--AATTTTT-TTA-TTT-GGAAAACAATATA----T-TC-ATC--ATCTTA-AATCAGAAA--AAAAAGCTT-GTGTTG-CAATTTTCTTGAGG
gi|15 : TTTT-TTA-TTT-GAAAGACAATACA----TAT--AGC--ATTTCA-AGTCAGAAA----AAAACTTAGTGTTG-CAATTGTCTTGAGGTTG-TGCCATCACTTCTCAC-AACTTCACTAAAC
gi|16 : GGCAAATA-TTTTAATTAAAATG-TGATGC-AT-----------------T-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAA
gi|2 : -ATTCTATTTTATTT-CCCA-GCGAAA-TATAAAG-TTTT-CTTAGTGAA--GAAA-AG--GAACATT-ACAGATACTTCCGGACATTGTACGACTCAT-TTTTAAAACAGTGATCAATCATTTATTAATTTCTTTCTCCAACTTCTA--TTTT-T-GAATCATTCGCATTAT-CC---AAAACTGA--AAGGACAACACA-AATTT-CCACATCTCCTTCGT-T----GCTTCGGTTATTTTCAAT-GAACG--TCCGGAAGAAAGTAAAA--TG-----GTTG----TCTCACT-G--------------CCCCCC-TCCCCCTTTCCTCCTTTTTATTTTTAT-GAAT-TATTTTCTAT--TTTTTGCTTC--GTTCTGGCAAATA-TTTTAATAAAAATG-TGATGC-ATT------AT-------G------------------------------GA--ATA-TT-CG-TCAT-CAACATTA-AGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAAATTTTTGT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-GTT--CGAAATATTTCA--AATC-ACACTTGTGG-AAAACAAAATGACA-AACAAA---GCTT-ACAT--AT-AATT-AA--AAAATA-GCGTG--TTTAACCA---T-AAACTATT-TCATG-T-TAAGATGTTTCCACTTTATTCAACGATTTTGCCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTTGA-C-GG-GTTGATTCCGGTAAA-AC--ATTTTTT-TTA-TTTCGAAAGACAAT-TACTATT-T--ATCATATCTTACAATCAGGAAAGACAAAGCTT-GTGTTG-CAATTTT-TTGAGGTTG-GGTCCTATTTTCTGAT-AACTTGACTGGA
gi|3 : tgattcagctgattatagagcAATCCATCATT-ATTGCAAGTTGAATAAT---GATT----CACGATTCATTCCCTTTTATTTTCCCAAGCGAAAATATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACAA-TCAT-TTTAAAAA---TGAT-AATCATT-AT-AATTTCTTTCTC-AACTT-TA--TTTT-TTGAC-CATCCA---TAT------------GN--NNNNNNNNNNNNNNNNNN-NN-NNNNNNNNNNNN-NNNNNNNNNNNNN-NNNN-NNNNNNNNNN--N---NNNGAAAA-AAAA--TA-----GCTT----TCT-AC-----------------CCCCCC-CCCT---TTCCCC--TTTTATTTTTTTTGA-T-TACTATTTATAATTTTTGGTG---GTTTTGGCAAATA-TTTTAATTCAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATACTTTCG-TCAT-CAACAATAAAGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAACTTTTTGT-ACATGAAAA-CTCAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--TGAAATATTTCA--AATCTACACTTGT-TTAAAACCAAACTGCACAACAAA---GCTG-ACAT--AT-GATT-TA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCC-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTTATTA--TT-GAAAGACAATAT-----T-T--ATC--ATCTT--AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTGATAAACTTGACTGGAC
gi|4 : TTTATT--CCCAA-CGAAA-TATAAGG-TTTT-CTTAGTGAATAGAAAGAG--GAACATT-AA-GATACTTC-GGACAT-TGACGA-TCAAATTTAAAAAC--TGA--AACAATT-A---ATT---------AACAT-TAGATTTT-TTGAA-CATCCAC--TAT-CCCAAA-----AT--AACGAGACAACACAATCTTCC-CA-CATCTCTGCCTTCGTGCT-CGGT-ATTT-CAAGTGAACG--T---GGAGAAA-TAAAA--T------GTTTAGCCTCT-A---G--------------CCCCCC-CT-----TTCCCC--TTTTATTTTTAT-GA-T-C-TTATTT-TA-TTTTTGTTGTTGGTTCTGGCAAATA-TTTTAATTAAAA-G-TGATGC-ATT----------------------------------A----------TGA--ATA-TTTCGGTCATACGAAAA-AGAGA--TTTTATGTTACAAGA-CGTATTG-ATCT-TCCTCAAATTTTTGT-ACATGAAAA-CTGAT-ATTTCA-CCTC-AAAA---TTCTGGCT-ATATCG-T--CGAAATATTCC---AATCTACACTTGT-G-AAAACCAAAATGCACAACAAA---GCTT-ACAT--AT-AATTAAA--AAAATATGCGTGTTTTTAACCA---TAAAACTATTATCA------GAGAC-TT--CATTT--TTCAACGATTTT-CCCAACAAATATTTCAACTTTTACATCCTCAAAAAA--TCCCCT-TTGCA-CGGGTTTTGATTTC-GT-AACACTTA-TTTTT-TTA-TTT-GAAAGACAATATAT---T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGC-C-GTGTTG-CAATTTTCTTGAGGTTG----CCTATTTTCTGAT-AA-TTGACTGGAt
gi|5 : AAATG-TGATGC-AATCACTTCAT-------GTTTGCAATATATATATATA----------TGA--ATA-TTTCG-TCAT-CAACAATAAAGA--TTTTATATTACAAGA-GTTAATGCAT-T-TTCTCAACTTTTTCT-ACATGAAAA-CTGAA-TTTTCA-CCTA-AAAA---TTCTGGCT-ATAT-G-T--CAAAATATTTTA--AATCTACACTTGA-T-AAAACGAAACTACACAACCAA---GTTG-ACAT--TT-AATT-TA--AAAAGATGCATG-TTTTAACCATATT-AAGCTATT-TCATGCTATAAGAT-TTTCCA-TT--TTCAACGATTTC-CCC-ACAAA-ATTTCAAC-TTT-TATCCTCAAAAAT--T-CCCCATTCCA-CGGG-TTTAATTTAGGT-AA-AC--A-TTGTT-TTA-TTT-GAAAGACAA----------------------TA-AATCAGGAA--AC-AAGCTT-GTGTTG-CA-----------GTTG-GGCCTTATTTTCTCAT-AACTTGACTGGAC
gi|6 : GA--TTCTA--TTACAAGA-CTCGGTGCAT-T-TTC-CAACTTTTTCT-ACTTGAAAA-TAGAA-TTTTCA-CCTC-AAAA---TTCCAAAT-ATTT-T-T--CACAATGTTACA--AATTTACACTTAT-TAAAAATTGAATTGCACAACCAA---G-TGTACAT--AT-AATA-AAAGAAAAT-TGCATG-ATTTCATTC---T-AAACTGTT-TCATGCT-TAG--------TATAT--TTCAACGATGTC-CAC-ACACA-ATGTTAAC-TTT-TACCCCC--AAAA--C-CCCC-TT
gi|7 : AAATA-T-ATGT-ATTCA--------------T-----------------A----------TGC--ATA-TTTCG-TCAA-CAACAATATAGA--TTCAACATTACAAAA-CTTAGTGCAT-T-T----------TTCT-ACAAGAAAA-TAGAA-TTTTCA-CCTT-AAAAAAACCCT------TTT-T-T--CAAAATATTACA--AATTTACACTTGT-T-AAAACTAAATTGCACAACCAA---G-TGTATAT--AT-AAT
gi|8 : TCCATCATT-AT-GCAAGTTGAATAAT---GATTGGTCCGCTATT-ATTCCCTTTTATTT-CCCTAGTGAAA-TATAAAG-CTTT-CTTAGTGAAT-GAAA-AG--GGACAAT-AT-GCTACTTC-GGACAT-GAACAA-TCAT-TTTGAAAA----G---GATCATT-AT-GATTTTTTTCTC-AACTT-T---TTTT-T--AA-CATCCA---TAT-aaat
gi|9 : T-TCC-ACAAA-ATTTCATCTTTT--ATCCTCAAAAAAATC-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-TT-ATC--ATCGTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGTCCTATTTTCTCAT-AACTTGACTGGAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1 1 111 1111 22 44444444 1 6666666666666666666666 111 2222222222 1 111111 11 6666666666666666666666666666666666666666 111 11 11 333 000000000000000000000000000000000000000000000 111 111 11 11 111 1 1111 1111 2222222222
lowQualScore : 3 3 777 7777 8 1 77 11 5 5 5 11 5 77 5 66 0 5 6 2 6 6 1 66666666 6 6 6 6 99 6 0 8 2222222222222222222222 1 111 5 8888 5 1 7777777777 2 8 6 333 888888 44 3333333333333333333333333333333333333333 8 444 11 0 8 8 8 0 66 33 1 222 8 5 5 111111111111111111111111111111111111111111111 66 5 5 5 6 66 6 66 1 5 5 0 3 0 1 5 5 0 5 5 5 888 5 888 77 1 77 555 1 0 1 000 8 55 77 5 77 99 66 111 6 6 2 99 6 3 1 99 5 5 5 2 55 4444 5 5 5 5 5 6666 5 5 5 0 5555555555 66 5 66 5 5 66 0 5
lowQualScore : . . ... .... . . .. .. . . . .. . .. . .. . . . . . . . ........ . . . . .. . . . ...................... . ... . .... . . .......... . . . ... ...... .. ........................................ . ... .. . . . . . .. .. . ... . . . ............................................. .. . . . . .. . .. . . . . . . . . . . . . . ... . ... .. . .. ... . . . ... . .. .. . .. .. .. ... . . . .. . . . .. . . . . .. .... . . . . . .... . . . . .......... .. . .. . . .. . .
lowQualScore : 3 3 555 2222 0 7 11 11 7 7 7 11 7 99 7 11 1 7 7 2 7 7 0 77777777 7 7 7 7 22 7 6 0 0000000000000000000000 0 222 2 6666 8 0 6666666666 8 0 0 444 000000 44 0000000000000000000000000000000000000000 0 000 00 8 0 0 0 8 55 22 0 888 0 7 7 111111111111111111111111111111111111111111111 99 0 0 0 6 99 2 44 1 0 0 2 1 1 0 0 0 8 0 0 0 888 7 666 99 0 99 000 0 4 3 000 9 77 99 7 77 22 88 777 7 7 5 88 7 2 7 22 7 7 7 0 99 6666 0 7 7 7 7 0000 0 0 0 1 6666666666 99 0 99 0 0 44 7 7
consensus : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT-CC---A-----GT--AANGACANNACACAATCT-CC-CATCTCCTTCGC-TTCGTGCTTCGGT-ATTT-CAATTGAACG--T---GGAGAAAATAAAA--TAAT---GCTT----TCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTG-ACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
Reference ( family-12719 ) : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT-CC---A-----GT--AANGACANNACACAATCT-CC-CATCNCCTTCGC-TTCGTGCTTCGGT-ATTT-CAATTGAACG--T---GGAGAAAATAAAA--TAAT---GCTT----TCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTG-ACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
gi|1 : CTTTTTATTT-CCCAAGTGAAA-TATTAAG-TTTTTCTTTATGAA--GAAA-AGCGGGACCTTTAT-GCCACTTC-GGACAT-GAACAA-TCAT-TTTTAAAA-----AT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTTATTTAA-CATCCA---TATGCC---A-----ATCTAAAGAC--TACACAATCT-TC-CACATCC----C-TTCATACTTCGGT-ATTTACAATTGAACGGGT---GGAGAAAATAAAAATTAAT---GCTT----TCT-ACTTAAATTGCCACACCACCCCCCC-CCCC---TTCCCC--TTTTATTTT-AT-GA-TTCATTATT-ATA-TTTTTGGTG---GTTTTAGCAAATAATTTTAATTAAAATGCTGATGCCATTCACTTCATCCTTTTTGC-----------------AAAATTATATTTGATAATA-TTTCG-TCAT-CAACAATAAAGGATTTTTATGTTACACGAGTTTAATGCAT-T-TCCTCA-CTTTTTGTTACATGAAAAACTGAAATTTTCAACCTCCAAAA---TGCTGGCTTATAT-G-TTCCGAAATATTGCACAAATCTACAGTTGT-T-AAAACGAAACTGTACAACAAATGAGTT--ACGTTTATTAATT-TA--AAAATATGCGTGGTTTTAACCA---T-AAACTATT--CATGCT--AAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAAC-ATT-TATCCTCAAAAAA--TCCCCT-TTTCACCGGG-GTTGATTTCGGT-AA-ACA-A-TTTTT-TTATTTT-GGAAGACAATATA----T-TCCATC--AATCTA-AATCAGGAA--ACAAAGCTT-GTGTTGCCAATTTTCTTGAGGTTGCGGCCCAATTTTCTCAT-AACTTGACTGGA
gi|10 : TTGAATAAT---GATTGTTCCATGATT-ATTCCC------------AAGTGAAA-TATAAAG-TTT--CTTCGTG----------------CATT-AT-GCTACTTT-GGA----GAA----TCAT-TCTAAAAAC-------GACCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-T
gi|11 : AATCCATCATTTAT-GCAAGTTGAATACTACAGATTGT--CACGATT-ATTCCCCTTTACTT-TCCAATGAAAA-TATTAAGCTTTT-CTAAGTGAA--GACA-AA--TGGCATT-AC-GC-ACATC-GGAC
gi|12 : TTT-CA-CATCTCCTTCG------TATTTCGGT-ATTC-CA-TTGAACG--T---GGAGAAA-TAAAA--TAATTATGCTT----TCT-ACTTG--------------CCACCCACCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTAT
gi|13 : cAT-------GC-----------------A----------T-A--ATA-TTTCG-TCAA-CAACAGTACAGA--TTCTACATTACAAAA-CTGAGTGCAT-TGTC--AAACTTCTTTT-ACCTGAAAA-TATAA-TTTTCA-CCTC-AAAA---T
gi|14 : atttatCCT-TTCCA-TGGG-GTTGATTTCGGT-AA-AC--AATTTTT-TTA-TTT-GGAAAACAATATA----T-TC-ATC--ATCTTA-AATCAGAAA--AAAAAGCTT-GTGTTG-CAATTTTCTTGAGG
gi|15 : TTTT-TTA-TTT-GAAAGACAATACA----TAT--AGC--ATTTCA-AGTCAGAAA----AAAACTTAGTGTTG-CAATTGTCTTGAGGTTG-TGCCATCACTTCTCAC-AACTTCACTAAAC
gi|16 : GGCAAATA-TTTTAATTAAAATG-TGATGC-AT-----------------T-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAA
gi|2 : -ATTCTATTTTATTT-CCCA-GCGAAA-TATAAAG-TTTT-CTTAGTGAA--GAAA-AG--GAACATT-ACAGATACTTCCGGACATTGTACGACTCAT-TTTTAAAACAGTGATCAATCATTTATTAATTTCTTTCTCCAACTTCTA--TTTT-T-GAATCATTCGCATTAT-CC---AAAACTGA--AAGGACAACACA-AATTT-CCACATCTCCTTCGT-T----GCTTCGGTTATTTTCAAT-GAACG--TCCGGAAGAAAGTAAAA--TG-----GTTG----TCTCACT-G--------------CCCCCC-TCCCCCTTTCCTCCTTTTTATTTTTAT-GAAT-TATTTTCTAT--TTTTTGCTTC--GTTCTGGCAAATA-TTTTAATAAAAATG-TGATGC-ATT------AT-------G------------------------------GA--ATA-TT-CG-TCAT-CAACATTA-AGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAAATTTTTGT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-GTT--CGAAATATTTCA--AATC-ACACTTGTGG-AAAACAAAATGACA-AACAAA---GCTT-ACAT--AT-AATT-AA--AAAATA-GCGTG--TTTAACCA---T-AAACTATT-TCATG-T-TAAGATGTTTCCACTTTATTCAACGATTTTGCCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTTGA-C-GG-GTTGATTCCGGTAAA-AC--ATTTTTT-TTA-TTTCGAAAGACAAT-TACTATT-T--ATCATATCTTACAATCAGGAAAGACAAAGCTT-GTGTTG-CAATTTT-TTGAGGTTG-GGTCCTATTTTCTGAT-AACTTGACTGGA
gi|3 : tgattcagctgattatagagcAATCCATCATT-ATTGCAAGTTGAATAAT---GATT----CACGATTCATTCCCTTTTATTTTCCCAAGCGAAAATATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACAA-TCAT-TTTAAAAA---TGAT-AATCATT-AT-AATTTCTTTCTC-AACTT-TA--TTTT-TTGAC-CATCCA---TAT------------GN--NNNNNNNNNNNNNNNNNN-NN-NNNNNNNNNNNN-NNNNNNNNNNNNN-NNNN-NNNNNNNNNN--N---NNNGAAAA-AAAA--TA-----GCTT----TCT-AC-----------------CCCCCC-CCCT---TTCCCC--TTTTATTTTTTTTGA-T-TACTATTTATAATTTTTGGTG---GTTTTGGCAAATA-TTTTAATTCAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATACTTTCG-TCAT-CAACAATAAAGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAACTTTTTGT-ACATGAAAA-CTCAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--TGAAATATTTCA--AATCTACACTTGT-TTAAAACCAAACTGCACAACAAA---GCTG-ACAT--AT-GATT-TA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCC-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTTATTA--TT-GAAAGACAATAT-----T-T--ATC--ATCTT--AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTGATAAACTTGACTGGAC
gi|4 : TTTATT--CCCAA-CGAAA-TATAAGG-TTTT-CTTAGTGAATAGAAAGAG--GAACATT-AA-GATACTTC-GGACAT-TGACGA-TCAAATTTAAAAAC--TGA--AACAATT-A---ATT---------AACAT-TAGATTTT-TTGAA-CATCCAC--TAT-CCCAAA-----AT--AACGAGACAACACAATCTTCC-CA-CATCTCTGCCTTCGTGCT-CGGT-ATTT-CAAGTGAACG--T---GGAGAAA-TAAAA--T------GTTTAGCCTCT-A---G--------------CCCCCC-CT-----TTCCCC--TTTTATTTTTAT-GA-T-C-TTATTT-TA-TTTTTGTTGTTGGTTCTGGCAAATA-TTTTAATTAAAA-G-TGATGC-ATT----------------------------------A----------TGA--ATA-TTTCGGTCATACGAAAA-AGAGA--TTTTATGTTACAAGA-CGTATTG-ATCT-TCCTCAAATTTTTGT-ACATGAAAA-CTGAT-ATTTCA-CCTC-AAAA---TTCTGGCT-ATATCG-T--CGAAATATTCC---AATCTACACTTGT-G-AAAACCAAAATGCACAACAAA---GCTT-ACAT--AT-AATTAAA--AAAATATGCGTGTTTTTAACCA---TAAAACTATTATCA------GAGAC-TT--CATTT--TTCAACGATTTT-CCCAACAAATATTTCAACTTTTACATCCTCAAAAAA--TCCCCT-TTGCA-CGGGTTTTGATTTC-GT-AACACTTA-TTTTT-TTA-TTT-GAAAGACAATATAT---T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGC-C-GTGTTG-CAATTTTCTTGAGGTTG----CCTATTTTCTGAT-AA-TTGACTGGAt
gi|5 : AAATG-TGATGC-AATCACTTCAT-------GTTTGCAATATATATATATA----------TGA--ATA-TTTCG-TCAT-CAACAATAAAGA--TTTTATATTACAAGA-GTTAATGCAT-T-TTCTCAACTTTTTCT-ACATGAAAA-CTGAA-TTTTCA-CCTA-AAAA---TTCTGGCT-ATAT-G-T--CAAAATATTTTA--AATCTACACTTGA-T-AAAACGAAACTACACAACCAA---GTTG-ACAT--TT-AATT-TA--AAAAGATGCATG-TTTTAACCATATT-AAGCTATT-TCATGCTATAAGAT-TTTCCA-TT--TTCAACGATTTC-CCC-ACAAA-ATTTCAAC-TTT-TATCCTCAAAAAT--T-CCCCATTCCA-CGGG-TTTAATTTAGGT-AA-AC--A-TTGTT-TTA-TTT-GAAAGACAA----------------------TA-AATCAGGAA--AC-AAGCTT-GTGTTG-CA-----------GTTG-GGCCTTATTTTCTCAT-AACTTGACTGGAC
gi|6 : GA--TTCTA--TTACAAGA-CTCGGTGCAT-T-TTC-CAACTTTTTCT-ACTTGAAAA-TAGAA-TTTTCA-CCTC-AAAA---TTCCAAAT-ATTT-T-T--CACAATGTTACA--AATTTACACTTAT-TAAAAATTGAATTGCACAACCAA---G-TGTACAT--AT-AATA-AAAGAAAAT-TGCATG-ATTTCATTC---T-AAACTGTT-TCATGCT-TAG--------TATAT--TTCAACGATGTC-CAC-ACACA-ATGTTAAC-TTT-TACCCCC--AAAA--C-CCCC-TT
gi|7 : AAATA-T-ATGT-ATTCA--------------T-----------------A----------TGC--ATA-TTTCG-TCAA-CAACAATATAGA--TTCAACATTACAAAA-CTTAGTGCAT-T-T----------TTCT-ACAAGAAAA-TAGAA-TTTTCA-CCTT-AAAAAAACCCT------TTT-T-T--CAAAATATTACA--AATTTACACTTGT-T-AAAACTAAATTGCACAACCAA---G-TGTATAT--AT-AAT
gi|8 : TCCATCATT-AT-GCAAGTTGAATAAT---GATTGGTCCGCTATT-ATTCCCTTTTATTT-CCCTAGTGAAA-TATAAAG-CTTT-CTTAGTGAAT-GAAA-AG--GGACAAT-AT-GCTACTTC-GGACAT-GAACAA-TCAT-TTTGAAAA----G---GATCATT-AT-GATTTTTTTCTC-AACTT-T---TTTT-T--AA-CATCCA---TAT-aaat
gi|9 : T-TCC-ACAAA-ATTTCATCTTTT--ATCCTCAAAAAAATC-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-TT-ATC--ATCGTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGTCCTATTTTCTCAT-AACTTGACTGGAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1 1 111 1111 22 44444444 1 6666666666666666666666 111 11111 3333333333 1 111111 11 6666666666666666666666666666666666666666 111 11 11 333 000000000000000000000000000000000000000000000 111 111 11 11 111 1 1111 1111 2222222222
lowQualScore : 3 3 777 7777 8 1 77 11 5 5 5 11 5 77 5 66 0 5 6 2 6 6 1 66666666 6 6 6 6 99 6 0 8 2222222222222222222222 1 111 5 44444 0000000000 2 8 6 333 888888 44 3333333333333333333333333333333333333333 8 444 11 0 8 8 8 0 66 33 1 222 8 5 5 111111111111111111111111111111111111111111111 66 5 5 5 6 66 6 66 1 5 5 0 3 0 1 5 5 0 5 5 5 888 5 888 77 1 77 555 1 0 1 000 8 55 77 5 77 99 66 111 6 6 2 99 6 3 1 99 5 5 5 2 55 4444 5 5 5 5 5 6666 5 5 5 0 5555555555 66 5 66 5 5 66 0 5
lowQualScore : . . ... .... . . .. .. . . . .. . .. . .. . . . . . . . ........ . . . . .. . . . ...................... . ... . ..... .......... . . . ... ...... .. ........................................ . ... .. . . . . . .. .. . ... . . . ............................................. .. . . . . .. . .. . . . . . . . . . . . . . ... . ... .. . .. ... . . . ... . .. .. . .. .. .. ... . . . .. . . . .. . . . . .. .... . . . . . .... . . . . .......... .. . .. . . .. . .
lowQualScore : 3 3 555 2222 0 7 11 11 7 7 7 11 7 99 7 11 1 7 7 2 7 7 0 77777777 7 7 7 7 22 7 6 0 0000000000000000000000 0 222 2 22222 4444444444 8 0 0 444 000000 44 0000000000000000000000000000000000000000 0 000 00 8 0 0 0 8 55 22 0 888 0 7 7 111111111111111111111111111111111111111111111 99 0 0 0 6 99 2 44 1 0 0 2 1 1 0 0 0 8 0 0 0 888 7 666 99 0 99 000 0 4 3 000 9 77 99 7 77 22 88 777 7 7 5 88 7 2 7 22 7 7 7 0 99 6666 0 7 7 7 7 0000 0 0 0 1 6666666666 99 0 99 0 0 44 7 7
consensus : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT-CC---A-----GT--AANGACANNACACAATCTCC-C---ATCTCCTTCGCTTCGTGCTTCGGT-ATTT-CAATTGAACG--T---GGAGAAAATAAAA--TAAT---GCTT----TCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTG-ACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
Reference ( family-12719 ) : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT-CC---A-----GT--AANGACANNACACAATCTCC-C---ATCTCCTTCGCTTCGTGCTTCGGT-ATTT-CAATTGAACG--T---GGAGAAAATAAAA--TAAT---GCTT----TCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTG-ACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
gi|1 : CTTTTTATTT-CCCAAGTGAAA-TATTAAG-TTTTTCTTTATGAA--GAAA-AGCGGGACCTTTAT-GCCACTTC-GGACAT-GAACAA-TCAT-TTTTAAAA-----AT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTTATTTAA-CATCCA---TATGCC---A-----ATCTAAAGAC--TACACAATCTTC-C---ACATCC----CTTCATACTTCGGT-ATTTACAATTGAACGGGT---GGAGAAAATAAAAATTAAT---GCTT----TCT-ACTTAAATTGCCACACCACCCCCCC-CCCC---TTCCCC--TTTTATTTT-AT-GA-TTCATTATT-ATA-TTTTTGGTG---GTTTTAGCAAATAATTTTAATTAAAATGCTGATGCCATTCACTTCATCCTTTTTGC-----------------AAAATTATATTTGATAATA-TTTCG-TCAT-CAACAATAAAGGATTTTTATGTTACACGAGTTTAATGCAT-T-TCCTCA-CTTTTTGTTACATGAAAAACTGAAATTTTCAACCTCCAAAA---TGCTGGCTTATAT-G-TTCCGAAATATTGCACAAATCTACAGTTGT-T-AAAACGAAACTGTACAACAAATGAGTT--ACGTTTATTAATT-TA--AAAATATGCGTGGTTTTAACCA---T-AAACTATT--CATGCT--AAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAAC-ATT-TATCCTCAAAAAA--TCCCCT-TTTCACCGGG-GTTGATTTCGGT-AA-ACA-A-TTTTT-TTATTTT-GGAAGACAATATA----T-TCCATC--AATCTA-AATCAGGAA--ACAAAGCTT-GTGTTGCCAATTTTCTTGAGGTTGCGGCCCAATTTTCTCAT-AACTTGACTGGA
gi|10 : TTGAATAAT---GATTGTTCCATGATT-ATTCCC------------AAGTGAAA-TATAAAG-TTT--CTTCGTG----------------CATT-AT-GCTACTTT-GGA----GAA----TCAT-TCTAAAAAC-------GACCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-T
gi|11 : AATCCATCATTTAT-GCAAGTTGAATACTACAGATTGT--CACGATT-ATTCCCCTTTACTT-TCCAATGAAAA-TATTAAGCTTTT-CTAAGTGAA--GACA-AA--TGGCATT-AC-GC-ACATC-GGAC
gi|12 : TTTCA-C---ATCTCCTTCG-----TATTTCGGT-ATTC-CA-TTGAACG--T---GGAGAAA-TAAAA--TAATTATGCTT----TCT-ACTTG--------------CCACCCACCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTAT
gi|13 : cAT-------GC-----------------A----------T-A--ATA-TTTCG-TCAA-CAACAGTACAGA--TTCTACATTACAAAA-CTGAGTGCAT-TGTC--AAACTTCTTTT-ACCTGAAAA-TATAA-TTTTCA-CCTC-AAAA---T
gi|14 : atttatCCT-TTCCA-TGGG-GTTGATTTCGGT-AA-AC--AATTTTT-TTA-TTT-GGAAAACAATATA----T-TC-ATC--ATCTTA-AATCAGAAA--AAAAAGCTT-GTGTTG-CAATTTTCTTGAGG
gi|15 : TTTT-TTA-TTT-GAAAGACAATACA----TAT--AGC--ATTTCA-AGTCAGAAA----AAAACTTAGTGTTG-CAATTGTCTTGAGGTTG-TGCCATCACTTCTCAC-AACTTCACTAAAC
gi|16 : GGCAAATA-TTTTAATTAAAATG-TGATGC-AT-----------------T-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAA
gi|2 : -ATTCTATTTTATTT-CCCA-GCGAAA-TATAAAG-TTTT-CTTAGTGAA--GAAA-AG--GAACATT-ACAGATACTTCCGGACATTGTACGACTCAT-TTTTAAAACAGTGATCAATCATTTATTAATTTCTTTCTCCAACTTCTA--TTTT-T-GAATCATTCGCATTAT-CC---AAAACTGA--AAGGACAACACA-AATTTCCAC---ATCTCCTTCGTT----GCTTCGGTTATTTTCAAT-GAACG--TCCGGAAGAAAGTAAAA--TG-----GTTG----TCTCACT-G--------------CCCCCC-TCCCCCTTTCCTCCTTTTTATTTTTAT-GAAT-TATTTTCTAT--TTTTTGCTTC--GTTCTGGCAAATA-TTTTAATAAAAATG-TGATGC-ATT------AT-------G------------------------------GA--ATA-TT-CG-TCAT-CAACATTA-AGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAAATTTTTGT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-GTT--CGAAATATTTCA--AATC-ACACTTGTGG-AAAACAAAATGACA-AACAAA---GCTT-ACAT--AT-AATT-AA--AAAATA-GCGTG--TTTAACCA---T-AAACTATT-TCATG-T-TAAGATGTTTCCACTTTATTCAACGATTTTGCCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTTGA-C-GG-GTTGATTCCGGTAAA-AC--ATTTTTT-TTA-TTTCGAAAGACAAT-TACTATT-T--ATCATATCTTACAATCAGGAAAGACAAAGCTT-GTGTTG-CAATTTT-TTGAGGTTG-GGTCCTATTTTCTGAT-AACTTGACTGGA
gi|3 : tgattcagctgattatagagcAATCCATCATT-ATTGCAAGTTGAATAAT---GATT----CACGATTCATTCCCTTTTATTTTCCCAAGCGAAAATATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACAA-TCAT-TTTAAAAA---TGAT-AATCATT-AT-AATTTCTTTCTC-AACTT-TA--TTTT-TTGAC-CATCCA---TAT------------GN--NNNNNNNNNNNNNNNNNNNN-N---NNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNNNNN--N---NNNGAAAA-AAAA--TA-----GCTT----TCT-AC-----------------CCCCCC-CCCT---TTCCCC--TTTTATTTTTTTTGA-T-TACTATTTATAATTTTTGGTG---GTTTTGGCAAATA-TTTTAATTCAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATACTTTCG-TCAT-CAACAATAAAGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAACTTTTTGT-ACATGAAAA-CTCAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--TGAAATATTTCA--AATCTACACTTGT-TTAAAACCAAACTGCACAACAAA---GCTG-ACAT--AT-GATT-TA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCC-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTTATTA--TT-GAAAGACAATAT-----T-T--ATC--ATCTT--AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTGATAAACTTGACTGGAC
gi|4 : TTTATT--CCCAA-CGAAA-TATAAGG-TTTT-CTTAGTGAATAGAAAGAG--GAACATT-AA-GATACTTC-GGACAT-TGACGA-TCAAATTTAAAAAC--TGA--AACAATT-A---ATT---------AACAT-TAGATTTT-TTGAA-CATCCAC--TAT-CCCAAA-----AT--AACGAGACAACACAATCTTC-CCACATCTC-TGC-CTTCGTGCT-CGGT-ATTT-CAAGTGAACG--T---GGAGAAA-TAAAA--T------GTTTAGCCTCT-A---G--------------CCCCCC-CT-----TTCCCC--TTTTATTTTTAT-GA-T-C-TTATTT-TA-TTTTTGTTGTTGGTTCTGGCAAATA-TTTTAATTAAAA-G-TGATGC-ATT----------------------------------A----------TGA--ATA-TTTCGGTCATACGAAAA-AGAGA--TTTTATGTTACAAGA-CGTATTG-ATCT-TCCTCAAATTTTTGT-ACATGAAAA-CTGAT-ATTTCA-CCTC-AAAA---TTCTGGCT-ATATCG-T--CGAAATATTCC---AATCTACACTTGT-G-AAAACCAAAATGCACAACAAA---GCTT-ACAT--AT-AATTAAA--AAAATATGCGTGTTTTTAACCA---TAAAACTATTATCA------GAGAC-TT--CATTT--TTCAACGATTTT-CCCAACAAATATTTCAACTTTTACATCCTCAAAAAA--TCCCCT-TTGCA-CGGGTTTTGATTTC-GT-AACACTTA-TTTTT-TTA-TTT-GAAAGACAATATAT---T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGC-C-GTGTTG-CAATTTTCTTGAGGTTG----CCTATTTTCTGAT-AA-TTGACTGGAt
gi|5 : AAATG-TGATGC-AATCACTTCAT-------GTTTGCAATATATATATATA----------TGA--ATA-TTTCG-TCAT-CAACAATAAAGA--TTTTATATTACAAGA-GTTAATGCAT-T-TTCTCAACTTTTTCT-ACATGAAAA-CTGAA-TTTTCA-CCTA-AAAA---TTCTGGCT-ATAT-G-T--CAAAATATTTTA--AATCTACACTTGA-T-AAAACGAAACTACACAACCAA---GTTG-ACAT--TT-AATT-TA--AAAAGATGCATG-TTTTAACCATATT-AAGCTATT-TCATGCTATAAGAT-TTTCCA-TT--TTCAACGATTTC-CCC-ACAAA-ATTTCAAC-TTT-TATCCTCAAAAAT--T-CCCCATTCCA-CGGG-TTTAATTTAGGT-AA-AC--A-TTGTT-TTA-TTT-GAAAGACAA----------------------TA-AATCAGGAA--AC-AAGCTT-GTGTTG-CA-----------GTTG-GGCCTTATTTTCTCAT-AACTTGACTGGAC
gi|6 : GA--TTCTA--TTACAAGA-CTCGGTGCAT-T-TTC-CAACTTTTTCT-ACTTGAAAA-TAGAA-TTTTCA-CCTC-AAAA---TTCCAAAT-ATTT-T-T--CACAATGTTACA--AATTTACACTTAT-TAAAAATTGAATTGCACAACCAA---G-TGTACAT--AT-AATA-AAAGAAAAT-TGCATG-ATTTCATTC---T-AAACTGTT-TCATGCT-TAG--------TATAT--TTCAACGATGTC-CAC-ACACA-ATGTTAAC-TTT-TACCCCC--AAAA--C-CCCC-TT
gi|7 : AAATA-T-ATGT-ATTCA--------------T-----------------A----------TGC--ATA-TTTCG-TCAA-CAACAATATAGA--TTCAACATTACAAAA-CTTAGTGCAT-T-T----------TTCT-ACAAGAAAA-TAGAA-TTTTCA-CCTT-AAAAAAACCCT------TTT-T-T--CAAAATATTACA--AATTTACACTTGT-T-AAAACTAAATTGCACAACCAA---G-TGTATAT--AT-AAT
gi|8 : TCCATCATT-AT-GCAAGTTGAATAAT---GATTGGTCCGCTATT-ATTCCCTTTTATTT-CCCTAGTGAAA-TATAAAG-CTTT-CTTAGTGAAT-GAAA-AG--GGACAAT-AT-GCTACTTC-GGACAT-GAACAA-TCAT-TTTGAAAA----G---GATCATT-AT-GATTTTTTTCTC-AACTT-T---TTTT-T--AA-CATCCA---TAT-aaat
gi|9 : T-TCC-ACAAA-ATTTCATCTTTT--ATCCTCAAAAAAATC-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-TT-ATC--ATCGTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGTCCTATTTTCTCAT-AACTTGACTGGAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1 1 111 1111 22 44444444 1 6666666666666666666666 111 11111 3333333333 1 111111 11 6666666666666666666666666666666666666666 111 11 11 333 000000000000000000000000000000000000000000000 111 111 11 11 111 1 1111 1111 2222222222
lowQualScore : 3 3 777 7777 8 1 77 11 5 5 5 11 5 77 5 66 0 5 6 2 6 6 1 66666666 6 6 6 6 99 6 0 8 2222222222222222222222 1 111 5 44444 0000000000 2 8 6 333 888888 44 3333333333333333333333333333333333333333 8 444 11 0 8 8 8 0 66 33 1 222 8 5 5 111111111111111111111111111111111111111111111 66 5 5 5 6 66 6 66 1 5 5 0 3 0 1 5 5 0 5 5 5 888 5 888 77 1 77 555 1 0 1 000 8 55 77 5 77 99 66 111 6 6 2 99 6 3 1 99 5 5 5 2 55 4444 5 5 5 5 5 6666 5 5 5 0 5555555555 66 5 66 5 5 66 0 5
lowQualScore : . . ... .... . . .. .. . . . .. . .. . .. . . . . . . . ........ . . . . .. . . . ...................... . ... . ..... .......... . . . ... ...... .. ........................................ . ... .. . . . . . .. .. . ... . . . ............................................. .. . . . . .. . .. . . . . . . . . . . . . . ... . ... .. . .. ... . . . ... . .. .. . .. .. .. ... . . . .. . . . .. . . . . .. .... . . . . . .... . . . . .......... .. . .. . . .. . .
lowQualScore : 3 3 555 2222 0 7 11 11 7 7 7 11 7 99 7 11 1 7 7 2 7 7 0 77777777 7 7 7 7 22 7 6 0 0000000000000000000000 0 222 2 22222 4444444444 8 0 0 444 000000 44 0000000000000000000000000000000000000000 0 000 00 8 0 0 0 8 55 22 0 888 0 7 7 111111111111111111111111111111111111111111111 99 0 0 0 6 99 2 44 1 0 0 2 1 1 0 0 0 8 0 0 0 888 7 666 99 0 99 000 0 4 3 000 9 77 99 7 77 22 88 777 7 7 5 88 7 2 7 22 7 7 7 0 99 6666 0 7 7 7 7 0000 0 0 0 1 6666666666 99 0 99 0 0 44 7 7
consensus : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT-CC---A-----GT--AANGACANNACACAATCTCC-C---ATCTCCTTCGCTTCGTGCTTCGGT-ATTT-CAATTGAACG--T---GGAGAAAATAAAA--TAAT---GCTT----TCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTG-ACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
Reference ( family-12719 ) : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT-CC---A-----GT--AANGACANNACACAATCTCC-C---ATCTCCTTCGCTTCGTGCTTCGGT-ATTT-CAATTGAACG--T---GGAGAAAATAAAA--TAAT---GCTT----TCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTG-ACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
gi|1 : CTTTTTATTT-CCCAAGTGAAA-TATTAAG-TTTTTCTTTATGAA--GAAA-AGCGGGACCTTTAT-GCCACTTC-GGACAT-GAACAA-TCAT-TTTTAAAA-----AT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTTATTTAA-CATCCA---TATGCC---A-----ATCTAAAGAC--TACACAATCTTC-C---ACATCC----CTTCATACTTCGGT-ATTTACAATTGAACGGGT---GGAGAAAATAAAAATTAAT---GCTT----TCT-ACTTAAATTGCCACACCACCCCCCC-CCCC---TTCCCC--TTTTATTTT-AT-GA-TTCATTATT-ATA-TTTTTGGTG---GTTTTAGCAAATAATTTTAATTAAAATGCTGATGCCATTCACTTCATCCTTTTTGC-----------------AAAATTATATTTGATAATA-TTTCG-TCAT-CAACAATAAAGGATTTTTATGTTACACGAGTTTAATGCAT-T-TCCTCA-CTTTTTGTTACATGAAAAACTGAAATTTTCAACCTCCAAAA---TGCTGGCTTATAT-G-TTCCGAAATATTGCACAAATCTACAGTTGT-T-AAAACGAAACTGTACAACAAATGAGTT--ACGTTTATTAATT-TA--AAAATATGCGTGGTTTTAACCA---T-AAACTATT--CATGCT--AAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAAC-ATT-TATCCTCAAAAAA--TCCCCT-TTTCACCGGG-GTTGATTTCGGT-AA-ACA-A-TTTTT-TTATTTT-GGAAGACAATATA----T-TCCATC--AATCTA-AATCAGGAA--ACAAAGCTT-GTGTTGCCAATTTTCTTGAGGTTGCGGCCCAATTTTCTCAT-AACTTGACTGGA
gi|10 : TTGAATAAT---GATTGTTCCATGATT-ATTCCC------------AAGTGAAA-TATAAAG-TTT--CTTCGTG----------------CATT-AT-GCTACTTT-GGA----GAA----TCAT-TCTAAAAAC-------GACCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-T
gi|11 : AATCCATCATTTAT-GCAAGTTGAATACTACAGATTGT--CACGATT-ATTCCCCTTTACTT-TCCAATGAAAA-TATTAAGCTTTT-CTAAGTGAA--GACA-AA--TGGCATT-AC-GC-ACATC-GGAC
gi|12 : TTTCA-C---ATCTCCTTCG-----TATTTCGGT-ATTC-CA-TTGAACG--T---GGAGAAA-TAAAA--TAATTATGCTT----TCT-ACTTG--------------CCACCCACCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTAT
gi|13 : cAT-------GC-----------------A----------T-A--ATA-TTTCG-TCAA-CAACAGTACAGA--TTCTACATTACAAAA-CTGAGTGCAT-TGTC--AAACTTCTTTT-ACCTGAAAA-TATAA-TTTTCA-CCTC-AAAA---T
gi|14 : atttatCCT-TTCCA-TGGG-GTTGATTTCGGT-AA-AC--AATTTTT-TTA-TTT-GGAAAACAATATA----T-TC-ATC--ATCTTA-AATCAGAAA--AAAAAGCTT-GTGTTG-CAATTTTCTTGAGG
gi|15 : TTTT-TTA-TTT-GAAAGACAATACA----TAT--AGC--ATTTCA-AGTCAGAAA----AAAACTTAGTGTTG-CAATTGTCTTGAGGTTG-TGCCATCACTTCTCAC-AACTTCACTAAAC
gi|16 : GGCAAATA-TTTTAATTAAAATG-TGATGC-AT-----------------T-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAA
gi|2 : -ATTCTATTTTATTT-CCCA-GCGAAA-TATAAAG-TTTT-CTTAGTGAA--GAAA-AG--GAACATT-ACAGATACTTCCGGACATTGTACGACTCAT-TTTTAAAACAGTGATCAATCATTTATTAATTTCTTTCTCCAACTTCTA--TTTT-T-GAATCATTCGCATTAT-CC---AAAACTGA--AAGGACAACACA-AATTTCCAC---ATCTCCTTCGTT----GCTTCGGTTATTTTCAAT-GAACG--TCCGGAAGAAAGTAAAA--TG-----GTTG----TCTCACT-G--------------CCCCCC-TCCCCCTTTCCTCCTTTTTATTTTTAT-GAAT-TATTTTCTAT--TTTTTGCTTC--GTTCTGGCAAATA-TTTTAATAAAAATG-TGATGC-ATT------AT-------G------------------------------GA--ATA-TT-CG-TCAT-CAACATTA-AGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAAATTTTTGT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-GTT--CGAAATATTTCA--AATC-ACACTTGTGG-AAAACAAAATGACA-AACAAA---GCTT-ACAT--AT-AATT-AA--AAAATA-GCGTG--TTTAACCA---T-AAACTATT-TCATG-T-TAAGATGTTTCCACTTTATTCAACGATTTTGCCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTTGA-C-GG-GTTGATTCCGGTAAA-AC--ATTTTTT-TTA-TTTCGAAAGACAAT-TACTATT-T--ATCATATCTTACAATCAGGAAAGACAAAGCTT-GTGTTG-CAATTTT-TTGAGGTTG-GGTCCTATTTTCTGAT-AACTTGACTGGA
gi|3 : tgattcagctgattatagagcAATCCATCATT-ATTGCAAGTTGAATAAT---GATT----CACGATTCATTCCCTTTTATTTTCCCAAGCGAAAATATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACAA-TCAT-TTTAAAAA---TGAT-AATCATT-AT-AATTTCTTTCTC-AACTT-TA--TTTT-TTGAC-CATCCA---TAT------------GN--NNNNNNNNNNNNNNNNNNNN-N---NNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNNNNN--N---NNNGAAAA-AAAA--TA-----GCTT----TCT-AC-----------------CCCCCC-CCCT---TTCCCC--TTTTATTTTTTTTGA-T-TACTATTTATAATTTTTGGTG---GTTTTGGCAAATA-TTTTAATTCAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATACTTTCG-TCAT-CAACAATAAAGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAACTTTTTGT-ACATGAAAA-CTCAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--TGAAATATTTCA--AATCTACACTTGT-TTAAAACCAAACTGCACAACAAA---GCTG-ACAT--AT-GATT-TA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCC-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTTATTA--TT-GAAAGACAATAT-----T-T--ATC--ATCTT--AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTGATAAACTTGACTGGAC
gi|4 : TTTATT--CCCAA-CGAAA-TATAAGG-TTTT-CTTAGTGAATAGAAAGAG--GAACATT-AA-GATACTTC-GGACAT-TGACGA-TCAAATTTAAAAAC--TGA--AACAATT-A---ATT---------AACAT-TAGATTTT-TTGAA-CATCCAC--TAT-CCCAAA-----AT--AACGAGACAACACAATCTTC-CCACATCTC-TGC-CTTCGTGCT-CGGT-ATTT-CAAGTGAACG--T---GGAGAAA-TAAAA--T------GTTTAGCCTCT-A---G--------------CCCCCC-CT-----TTCCCC--TTTTATTTTTAT-GA-T-C-TTATTT-TA-TTTTTGTTGTTGGTTCTGGCAAATA-TTTTAATTAAAA-G-TGATGC-ATT----------------------------------A----------TGA--ATA-TTTCGGTCATACGAAAA-AGAGA--TTTTATGTTACAAGA-CGTATTG-ATCT-TCCTCAAATTTTTGT-ACATGAAAA-CTGAT-ATTTCA-CCTC-AAAA---TTCTGGCT-ATATCG-T--CGAAATATTCC---AATCTACACTTGT-G-AAAACCAAAATGCACAACAAA---GCTT-ACAT--AT-AATTAAA--AAAATATGCGTGTTTTTAACCA---TAAAACTATTATCA------GAGAC-TT--CATTT--TTCAACGATTTT-CCCAACAAATATTTCAACTTTTACATCCTCAAAAAA--TCCCCT-TTGCA-CGGGTTTTGATTTC-GT-AACACTTA-TTTTT-TTA-TTT-GAAAGACAATATAT---T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGC-C-GTGTTG-CAATTTTCTTGAGGTTG----CCTATTTTCTGAT-AA-TTGACTGGAt
gi|5 : AAATG-TGATGC-AATCACTTCAT-------GTTTGCAATATATATATATA----------TGA--ATA-TTTCG-TCAT-CAACAATAAAGA--TTTTATATTACAAGA-GTTAATGCAT-T-TTCTCAACTTTTTCT-ACATGAAAA-CTGAA-TTTTCA-CCTA-AAAA---TTCTGGCT-ATAT-G-T--CAAAATATTTTA--AATCTACACTTGA-T-AAAACGAAACTACACAACCAA---GTTG-ACAT--TT-AATT-TA--AAAAGATGCATG-TTTTAACCATATT-AAGCTATT-TCATGCTATAAGAT-TTTCCA-TT--TTCAACGATTTC-CCC-ACAAA-ATTTCAAC-TTT-TATCCTCAAAAAT--T-CCCCATTCCA-CGGG-TTTAATTTAGGT-AA-AC--A-TTGTT-TTA-TTT-GAAAGACAA----------------------TA-AATCAGGAA--AC-AAGCTT-GTGTTG-CA-----------GTTG-GGCCTTATTTTCTCAT-AACTTGACTGGAC
gi|6 : GA--TTCTA--TTACAAGA-CTCGGTGCAT-T-TTC-CAACTTTTTCT-ACTTGAAAA-TAGAA-TTTTCA-CCTC-AAAA---TTCCAAAT-ATTT-T-T--CACAATGTTACA--AATTTACACTTAT-TAAAAATTGAATTGCACAACCAA---G-TGTACAT--AT-AATA-AAAGAAAAT-TGCATG-ATTTCATTC---T-AAACTGTT-TCATGCT-TAG--------TATAT--TTCAACGATGTC-CAC-ACACA-ATGTTAAC-TTT-TACCCCC--AAAA--C-CCCC-TT
gi|7 : AAATA-T-ATGT-ATTCA--------------T-----------------A----------TGC--ATA-TTTCG-TCAA-CAACAATATAGA--TTCAACATTACAAAA-CTTAGTGCAT-T-T----------TTCT-ACAAGAAAA-TAGAA-TTTTCA-CCTT-AAAAAAACCCT------TTT-T-T--CAAAATATTACA--AATTTACACTTGT-T-AAAACTAAATTGCACAACCAA---G-TGTATAT--AT-AAT
gi|8 : TCCATCATT-AT-GCAAGTTGAATAAT---GATTGGTCCGCTATT-ATTCCCTTTTATTT-CCCTAGTGAAA-TATAAAG-CTTT-CTTAGTGAAT-GAAA-AG--GGACAAT-AT-GCTACTTC-GGACAT-GAACAA-TCAT-TTTGAAAA----G---GATCATT-AT-GATTTTTTTCTC-AACTT-T---TTTT-T--AA-CATCCA---TAT-aaat
gi|9 : T-TCC-ACAAA-ATTTCATCTTTT--ATCCTCAAAAAAATC-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-TT-ATC--ATCGTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGTCCTATTTTCTCAT-AACTTGACTGGAC
blockSeqs : . T ACA GGTC C C TT GT A C . TA G . . CA C T G C A A CAGTGATC T T C C GA . T T CATTATCCAAAACTGA G AAC N CCAC NNNNNNNNNN T T T NNN TCCG GT TAATTATGCTTTCTACTTG A CCT CT T A . TA AA C TTG . . . CACTTCATGTTTGCAATATATATATATA . C G A C . C C G C G T T . . . . . AAA . GT . T . GG A A . C GT . . AA AG TT TAT A A C AT G T C TA G A T T AC ATC A . T A C TTA A . C ACTATTT AT C AG A . T A
blockSeqs : . . . GT . T T TG . . . T . . . T . . A . . T TGAT . . . . . . T . CTATCCCAAAAT N NNN C AC TGCCTTCG T . . AGT T T TGGTTGTCTCACTG . . . . . . TA A G C . . . CACTTCATGTA . . . . A . T G A . . T G . . . . . . . CG . T . TT C A . C GT . . A . T . . . C T . T T . . . . T T TC . . . . . AA . . . ATTC . . . . . G .
blockSeqs : . . . T T GC . . . T . . . C . . G . . A CTGA . . . . . . . . TATGN C ACA . C CTTCGTT N . . TT N A TGTTTAGCCTCTAG . . . . . . T . T . . . . CATA . . . . G . T G A . . T G . . . . . . . G . C . TA C A . C T . . T . T . . . C T . T T . . . . T T T . . . . . AT . . . ATAT . . . . . G .
blockSeqs : . T T GC . . . . . . . C . . A . . A C . . . . . . . . N CTTCG . . . AT T T TAGCTTTCTAC . . . . . . . . . ATG . . . . A . T C T . . T G . . . . . . . G . T . G G C . T G . . T . A . . . . T . . T . . . . T T T . . . . . A . . . ATTT . . . . . G .
blockSeqs : . . GT . . . . . . . A . . . . . G G . . . . . . . . TA . . . . T . T G A . . . C . . . . . . . T . A . T T C . . T . . A . . . . . . . . . . . . . . . T T . . . . . A . . . ATTT . . . . . G .
blockSeqs : . C . . . . . . . T . . . A . . . . . . C C G . . . C . . . . . . . T . A . T T C . . G . . . . . . . C . . . . . A . . . TT . . . . . . .
blockSeqs : . . . . . . C G . . . C . . . . . . . . . . . . . . . .
blockSeqCons : ** CTGAT*** CTTCG***** T***** T* TGTTGGCCTTCTACG************************* ** ** C* ** ** *** N* ** T* T* T*** A*** ATTT****** G*
originalCons : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT-CC---A-----GT--AANGACANNACACAATCTCC-C---ATCTCCTTCGCTTCGTGCTTCGGT-ATTT-CAATTGAACG--T---GGAGAAAATAAAA--TAAT---GCTT----TCT-ACTTG--------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTG-ACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAATATA----T-T--ATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
finalCons : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAACTGAT---GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT-CC---A-----GT--AANGACANNACACAATCTCC-C---ATCTCCTTCG-----TGCTTCGGT-ATTT-CAATTGAACGT-----GGAGAAAT-AAAATGTTGGCCTTCTACG-------------------------CCCCCC-CCCC---TTCCCC--TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGAC-TTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTN-ACAT--AT-AATT-NA--AAAATATGCGTGT-TTTAACCA---T-AAACTATT-TCATGCTT-AAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAAT---CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-ACA---TTTTT-TTA-TTT-GAAAGACAATATATTT------ATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTGG-GCCCTATTTTCTCAT-AACTTGACTGGAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1 1 111 1111 22 44444444 1 55555555555555555555555 111 11111111 111 1 111111 1 66666666666666666666666666666666666666 111 11 333 000000000000000000000000000000000000000000000 111 111 11 111 1 1111 1111
lowQualScore : 3 3 777 7777 8 1 77 11 5 5 5 11 5 77 5 66 0 5 6 2 6 6 1 66666666 6 6 6 6 99 6 0 8 99999999999999999999999 1 111 5 88888888 2 444 8 2 8 6 333 888888 6 11111111111111111111111111111111111111 8 444 0 8 8 8 0 66 33 1 222 8 5 5 111111111111111111111111111111111111111111111 66 5 5 5 6 66 6 66 1 5 5 0 3 0 1 5 5 0 5 5 5 888 5 888 77 1 77 555 1 0 1 000 4 1 77 5 77 99 66 111 6 6 2 99 6 3 1 99 5 5 5 2 55 4444 5 5 5 5 5 6666 5 5 5 55 5 5 66 5 66 0 5 5 66 0 5
lowQualScore : . . ... .... . . .. .. . . . .. . .. . .. . . . . . . . ........ . . . . .. . . . ....................... . ... . ........ . ... . . . . ... ...... . ...................................... . ... . . . . . .. .. . ... . . . ............................................. .. . . . . .. . .. . . . . . . . . . . . . . ... . ... .. . .. ... . . . ... . . .. . .. .. .. ... . . . .. . . . .. . . . . .. .... . . . . . .... . . . .. . . .. . .. . . . .. . .
lowQualScore : 3 3 555 2222 0 7 11 11 7 7 7 11 7 99 7 11 1 7 7 2 7 7 0 77777777 7 7 7 7 22 7 6 0 00000000000000000000000 0 222 2 22222222 8 000 0 8 0 0 444 000000 0 00000000000000000000000000000000000000 0 000 8 0 0 0 8 55 22 0 888 0 7 7 111111111111111111111111111111111111111111111 99 0 0 0 6 99 2 44 1 0 0 2 1 1 0 0 0 8 0 0 0 888 7 666 99 0 99 000 0 4 3 000 0 0 99 7 77 22 88 777 7 7 5 88 7 2 7 22 7 7 7 0 99 6666 0 7 7 7 7 0000 0 0 0 11 0 0 99 0 99 1 0 0 44 7 7
consensus : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TATG-CC---A-----AT--AANGACANNACACAATCTCC-C---A--TCTC---CTTCGT-GCTTCGGT-ATTT-CAATTGAACG--T---GGAGAAA-TAAAATA-TT-A--GCTTT-CTACTT-----GCC---------CCCC-CCCCTTCCCC---TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTTACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAA-TA-TATT-TATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
Reference ( family-12719 ) : AATCCATCATT-AT-GCAAGTTGAATAAT---GATTGTTCCACGATT-ATTCCCTTTTATTT-CCCAAGCGAAA-TATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACGA-TCAT-TTTNAAAAC--TGAT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-TTGAA-CATCCAC--TAT--CC---A-----GT--AANGACANNACACAATCTCC-C---A--TCTC---CTTCGT-GCTTCGGT-ATTT-CAATTGAACG--T---GGAGAAA-TAAAATG-TT-G--GCCTT-CTAC-------GCC---------CCCC-CCCCTTCCCC---TTTTATTTTTAT-GA-T-CATTATTTATA-TTTTTGNTGC--GTTCTGGCAAATA-TTTTAATTAAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAATANAGA--TTTTACGTTACAAGA-CTTAGTGCAT-T-TCCTCAACTTTTTNT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--CGAAATATTNCA--AATCTACACTTGT-T-AAAACNAAACTGCACAACAAA---GCTNACAT--AT-AATT-NA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCT-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAA-TA-TATT-TATC--ATCTTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTCAT-AACTTGACTGGAC
gi|1 : CTTTTTATTT-CCCAAGTGAAA-TATTAAG-TTTTTCTTTATGAA--GAAA-AGCGGGACCTTTAT-GCCACTTC-GGACAT-GAACAA-TCAT-TTTTAAAA-----AT-GATCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTTATTTAA-CATCCA---TATG-CC---A-----ATCTAAAGAC--TACACAATCTTC-C---ACATC-C---CTTCAT-ACTTCGGT-ATTTACAATTGAACGGGT---GGAGAAAATAAAA-A-TT-AATGCTTT-CTACTTAAATTGCCACACCACCCCCCC-CCCCTTCCCC---TTTTATTTT-AT-GA-TTCATTATT-ATA-TTTTTGGTG---GTTTTAGCAAATAATTTTAATTAAAATGCTGATGCCATTCACTTCATCCTTTTTGC-----------------AAAATTATATTTGATAATA-TTTCG-TCAT-CAACAATAAAGGATTTTTATGTTACACGAGTTTAATGCAT-T-TCCTCA-CTTTTTGTTACATGAAAAACTGAAATTTTCAACCTCCAAAA---TGCTGGCTTATAT-G-TTCCGAAATATTGCACAAATCTACAGTTGT-T-AAAACGAAACTGTACAACAAATGAG-TTACGTTTATTAATT-TA--AAAATATGCGTGGTTTTAACCA---T-AAACTATT--CATGCT--AAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAAC-ATT-TATCCTCAAAAAA--TCCCCT-TTTCACCGGG-GTTGATTTCGGT-AA-ACA-A-TTTTT-TTATTTT-GGAAGACAA-TA-TATTCCATC--AATCTA-AATCAGGAA--ACAAAGCTT-GTGTTGCCAATTTTCTTGAGGTTGCGGCCCAATTTTCTCAT-AACTTGACTGGA
gi|10 : TTGAATAAT---GATTGTTCCATGATT-ATTCCC------------AAGTGAAA-TATAAAG-TTT--CTTCGTG----------------CATT-AT-GCTACTTT-GGA----GAA----TCAT-TCTAAAAAC-------GACCATT-AT-GATTTCTTTCTC-AACTT-TA--TTTT-T
gi|11 : AATCCATCATTTAT-GCAAGTTGAATACTACAGATTGT--CACGATT-ATTCCCCTTTACTT-TCCAATGAAAA-TATTAAGCTTTT-CTAAGTGAA--GACA-AA--TGGCATT-AC-GC-ACATC-GGAC
gi|12 : TTTCA-C---A--TCTC---CTTCGT-ATTTCGGT-ATTC-CA-TTGAACG--T---GGAGAAA-TAAAATAATT-AT-GCTTT-CTACTT-----GCC---------ACCCACCCCTTCCCC---TTTTATTTTTAT-GA-T-CATTAT
gi|13 : cAT-------GC-----------------A----------T-A--ATA-TTTCG-TCAA-CAACAGTACAGA--TTCTACATTACAAAA-CTGAGTGCAT-TGTC--AAACTTCTTTT-ACCTGAAAA-TATAA-TTTTCA-CCTC-AAAA---T
gi|14 : atttatCCT-TTCCA-TGGG-GTTGATTTCGGT-AA-AC--AATTTTT-TTA-TTT-GGAAAACAA-TA-TATT-CATC--ATCTTA-AATCAGAAA--AAAAAGCTT-GTGTTG-CAATTTTCTTGAGG
gi|15 : TTTT-TTA-TTT-GAAAGACAA-TA-CATA-TAGC--ATTTCA-AGTCAGAAA--A--AAACTTAGTGTTG-CAATTGTCTTGAGGTTG-TGCCATCACTTCTCAC-AACTTCACTAAAC
gi|16 : GGCAAATA-TTTTAATTAAAATG-TGATGC-AT-----------------T-----------------A----------TGA--ATA-TTTCG-TCAT-CAACAA
gi|2 : -ATTCTATTTTATTT-CCCA-GCGAAA-TATAAAG-TTTT-CTTAGTGAA--GAAA-AG--GAACATT-ACAGATACTTCCGGACATTGTACGACTCAT-TTTTAAAACAGTGATCAATCATTTATTAATTTCTTTCTCCAACTTCTA--TTTT-T-GAATCATTCGCATTAT--CC---AAAACTGA--AAGGACAACACA-AATTTCCAC---A--TCTC---CTTCGTTGCTTCGGTTATTTTCAAT-GAACG--TCCGGAAGAAAGTAAAATG-GT-T--GTCTCACTGC-------CCC---------CCTC-CCCCTTTCCTCCTTTTTATTTTTAT-GAAT-TATTTTCTAT--TTTTTGCTTC--GTTCTGGCAAATA-TTTTAATAAAAATG-TGATGC-ATT------AT-------G------------------------------GA--ATA-TT-CG-TCAT-CAACATTA-AGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAAATTTTTGT-ACATGAAAA-CTGAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-GTT--CGAAATATTTCA--AATC-ACACTTGTGG-AAAACAAAATGACA-AACAAA---GCTTACAT--AT-AATT-AA--AAAATA-GCGTG--TTTAACCA---T-AAACTATT-TCATG-T-TAAGATGTTTCCACTTTATTCAACGATTTTGCCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTTGA-C-GG-GTTGATTCCGGTAAA-AC--ATTTTTT-TTA-TTTCGAAAGACAATTACTATT-TATCATATCTTACAATCAGGAAAGACAAAGCTT-GTGTTG-CAATTTT-TTGAGGTTG-GGTCCTATTTTCTGAT-AACTTGACTGGA
gi|3 : tgattcagctgattatagagcAATCCATCATT-ATTGCAAGTTGAATAAT---GATT----CACGATTCATTCCCTTTTATTTTCCCAAGCGAAAATATAAAG-TTTT-CTTAGTGAAT-GAAA-AG--GGACATT-AC-GCTACTTC-GGACAT-GAACAA-TCAT-TTTAAAAA---TGAT-AATCATT-AT-AATTTCTTTCTC-AACTT-TA--TTTT-TTGAC-CATCCA---TATGNNN---N-----NN--NNNNNNNNNNNNNNNNNNNN-N---N--NNNN---NNNNNN-NNNNNNNN-NNNN-NNNNNNNNNN--N---NNNGAAA-AAAAATA-------GCTTT-CTAC--------CC---------CCCC-CCCTTTCCCC---TTTTATTTTTTTTGA-T-TACTATTTATAATTTTTGGTG---GTTTTGGCAAATA-TTTTAATTCAAATG-TGATGC-ATTCACTTCAT-------GT-----------------A----------TGA--ATACTTTCG-TCAT-CAACAATAAAGA--TTTTATGTTACAAGA-GTTAATGCAT-T-TCCTCAACTTTTTGT-ACATGAAAA-CTCAA-TTTTCA-CCTC-AAAA---TTCTGGCT-ATAT-G-T--TGAAATATTTCA--AATCTACACTTGT-TTAAAACCAAACTGCACAACAAA---GCTGACAT--AT-GATT-TA--AAAATATGCGTG-TTTTAACCA---T-AAACTATT-TCATGCC-TAAGAT-TTTCCATTT--TTCAACGATTTT-CCC-ACAAA-ATTTCAACTTTT-TATCCTCAAAAAA--T-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTTATTA--TT-GAAAGACA---A-TATT-TATC--ATCTT--AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGCCCTATTTTCTGATAAACTTGACTGGAC
gi|4 : TTTATT--CCCAA-CGAAA-TATAAGG-TTTT-CTTAGTGAATAGAAAGAG--GAACATT-AA-GATACTTC-GGACAT-TGACGA-TCAAATTTAAAAAC--TGA--AACAATT-A---ATT---------AACAT-TAGATTTT-TTGAA-CATCCAC--TAT--CCCAAA-----AT--AACGAGACAACACAATCTTC-CCACA--TCTCTGCCTTCGT-GCT-CGGT-ATTT-CAAGTGAACG--T---GGAGAAA-TAAAATG-TTTA--GCCT--CTA--------GCC---------CCCC-CT--TTCCCC---TTTTATTTTTAT-GA-T-C-TTATTT-TA-TTTTTGTTGTTGGTTCTGGCAAATA-TTTTAATTAAAA-G-TGATGC-ATT----------------------------------A----------TGA--ATA-TTTCGGTCATACGAAAA-AGAGA--TTTTATGTTACAAGA-CGTATTG-ATCT-TCCTCAAATTTTTGT-ACATGAAAA-CTGAT-ATTTCA-CCTC-AAAA---TTCTGGCT-ATATCG-T--CGAAATATTCC---AATCTACACTTGT-G-AAAACCAAAATGCACAACAAA---GCTTACAT--AT-AATTAAA--AAAATATGCGTGTTTTTAACCA---TAAAACTATTATCA------GAGAC-TT--CATTT--TTCAACGATTTT-CCCAACAAATATTTCAACTTTTACATCCTCAAAAAA--TCCCCT-TTGCA-CGGGTTTTGATTTC-GT-AACACTTA-TTTTT-TTA-TTT-GAAAGACAA-TA-TATT-TATC--ATCTTA-AATCAGGAA--ACAAAGC-C-GTGTTG-CAATTTTCTTGAGGTTG----CCTATTTTCTGAT-AA-TTGACTGGAt
gi|5 : AAATG-TGATGC-AATCACTTCAT-------GTTTGCAATATATATATATA----------TGA--ATA-TTTCG-TCAT-CAACAATAAAGA--TTTTATATTACAAGA-GTTAATGCAT-T-TTCTCAACTTTTTCT-ACATGAAAA-CTGAA-TTTTCA-CCTA-AAAA---TTCTGGCT-ATAT-G-T--CAAAATATTTTA--AATCTACACTTGA-T-AAAACGAAACTACACAACCAA---GTTGACAT--TT-AATT-TA--AAAAGATGCATG-TTTTAACCATATT-AAGCTATT-TCATGCTATAAGAT-TTTCCA-TT--TTCAACGATTTC-CCC-ACAAA-ATTTCAAC-TTT-TATCCTCAAAAAT--T-CCCCATTCCA-CGGG-TTTAATTTAGGT-AA-AC--A-TTGTT-TTA-TTT-GAAAGACAA-------------------TA-AATCAGGAA--AC-AAGCTT-GTGTTG-CA-----------GTTG-GGCCTTATTTTCTCAT-AACTTGACTGGAC
gi|6 : GA--TTCTA--TTACAAGA-CTCGGTGCAT-T-TTC-CAACTTTTTCT-ACTTGAAAA-TAGAA-TTTTCA-CCTC-AAAA---TTCCAAAT-ATTT-T-T--CACAATGTTACA--AATTTACACTTAT-TAAAAATTGAATTGCACAACCAA---GTGTACAT--AT-AATA-AAAGAAAAT-TGCATG-ATTTCATTC---T-AAACTGTT-TCATGCT-TAG--------TATAT--TTCAACGATGTC-CAC-ACACA-ATGTTAAC-TTT-TACCCCC--AAAA--C-CCCC-TT
gi|7 : AAATA-T-ATGT-ATTCA--------------T-----------------A----------TGC--ATA-TTTCG-TCAA-CAACAATATAGA--TTCAACATTACAAAA-CTTAGTGCAT-T-T----------TTCT-ACAAGAAAA-TAGAA-TTTTCA-CCTT-AAAAAAACCCT------TTT-T-T--CAAAATATTACA--AATTTACACTTGT-T-AAAACTAAATTGCACAACCAA---GTGTATAT--AT-AAT
gi|8 : TCCATCATT-AT-GCAAGTTGAATAAT---GATTGGTCCGCTATT-ATTCCCTTTTATTT-CCCTAGTGAAA-TATAAAG-CTTT-CTTAGTGAAT-GAAA-AG--GGACAAT-AT-GCTACTTC-GGACAT-GAACAA-TCAT-TTTGAAAA----G---GATCATT-AT-GATTTTTTTCTC-AACTT-T---TTTT-T--AA-CATCCA---TAT--aaat
gi|9 : T-TCC-ACAAA-ATTTCATCTTTT--ATCCTCAAAAAAATC-CCCT-TTCCA-CGGG-GTTGATTTCGGT-AA-AC--A-TTTTT-TTA-TTT-GAAAGACAA-TA-TATT-TATC--ATCGTA-AATCAGGAA--ACAAAGCTT-GTGTTG-CAATTTTCTTGAGGTTG-GGTCCTATTTTCTCAT-AACTTGACTGGAC