lowQualScore : 11111111111111
lowQualScore : 1 2 111 2222222222 1 2222 111 1 1111 5555555555555555 111 111 1 1 22 1111 22222 11 22222222222222 222 5555555 222 11111 11 111 11111 22222222 33333333333333 444444444444444444 222222222 1 3333 11 111 2222222 1
lowQualScore : 66 8 0 55 0 1 1 44 0 111 6 6 7777777777 888 3 3 0 1 5 5 1 888 2 555 9999 0 1 5 888 0 22 3 1 5 5 5 3 77 1 99 4444 1111111111111111 111 111 1 6 6 6 5 3 3 1 6 1 6 2 6 11 3 5 2222 88 00000 33 3 8888 8888 4 6 99999999999999 1 5 999 1 777 4 4 66 7777777 4 2 555 666 2 66 22222 7 77 99 7 888 1 44444 3 6 99999999 99999999999999 8 99 5 222222222222222222 5 777777777 7 5 0 0 0 4444 2 8 99 4 6 6 6 33 1 000 6 3333333 6 3 2
lowQualScore : .. . . .. . . . .. . ... . . .......... ... . . . . . . . ... . ... .... . . . ... . .. . . . . . . .. . .. .... ................ ... ... . . . . . . . . . . . . . .. . . .... .. ..... .. . .... .... . . .............. . . ... . ... . . .. ....... . . ... ... . .. ..... . .. .. . ... . ..... . . ........ .............. . .. . .................. . ......... . . . . . .... . . .. . . . . .. . ... . ....... . . .
lowQualScore : 44 1 2 88 0 0 4 88 8 777 7 7 7777777777 777 7 2 8 4 7 7 1 888 5 999 2222 1 4 0 000 1 88 4 7 7 7 7 4 99 7 22 2222 5555555555555555 777 777 0 7 0 7 0 2 2 0 7 0 7 5 7 77 3 7 1111 77 00000 66 9 5555 5555 4 0 22222222222222 8 3 444 1 888 4 4 11 8888888 4 2 999 444 8 99 55555 1 00 66 9 111 3 33333 5 0 00000000 22222222222222 0 22 7 111111111111111111 7 111111111 6 4 7 7 9 1111 1 3 22 0 5 7 7 33 0 000 0 6666666 0 3 5
consensus : TGTTGACCAGAAATATCC-GAAAAAGTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAG-TA-------AAC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCA-TTTTGTTT-AATTCATA---AGNTA-A-CCCAG-ATCGGAATTAAGTGGAGA-TTTGGGTAATAAA-A-TTCCAAATCCGCAGCTTCGA-G-TCCA-AACAGGTCGT--GTAATAGGCAA--CATAC----ACAT---------TTT-T--GGTCTT---AT---ACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCA-TTAGGCAACGTTACATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCGGATGTG----ACAGCA----CAGTTTA-TACCAAACAGGAA-TTAGG------TNTTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAG---AATAATGT-GGAAGCAGATGCCCCGGTATCTCC-T-ATGCACG--AT-----CTTATGTCACAGTCCTCAGCTTG-TACGAACAG-AAAGCGATGAC-NATTTCCTCCCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACCACAN---AGGA----TG-TTTTCAATCAG--CATGTCCTC-AG------------------A-GCAAGGTACCAG------GCCAGCATCTGGTGGCAAAGTCACATCGC-AGCCNGGCTA--CNAATNGC-GT-CTNTCAGGTCAGTTTGA---TACAAAGAATCAAGCTCCAGTGGAAGTCC-ACNACAT
Reference ( gi|2 ) : TGTTGACCAGAAATATCC-AAAACGGTATCCCATTACTAAATG-TTGTAGTCGTCGACTTCTCGTTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAG-AA-------AAC-GAGCTCGTAGCTCTGATGCTGCTGATAACAACCA-TTTTGTTT-AATTCATA---AGGTA-A-CC-AA-ATCGGAATTAAGTGGAGA-TTTGGGTAATAAA-ATTTCCAAATCCGCAGCTTTGA-G-TCCA-AGCAGGTCGT--GTAATAGGCAA--CATAC----ACAT---------GTT-T--GGTCTT---AT---ACTA-TTGCGGCAAAGACAAAATCGTTG-GTTGTGTTTACATTCTGGATAACTATAACATTCA-TTAGGCAAGGTTGAATCCCGGCACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTATCAGATGTG----ACAGCA----CAGTTTA-TACCAAACAAGAACTTGGGTTTTTTTTTTTTTTACACAAACCTAGAGTAAC-GAGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GT---G---AATAATGT-GGAAGCAGATACCCCGGTATCTCC-A-ATGTACG--AT-----CTCATGTCACAGTTCTCAGCTTT-TATGAACAA-AAAGCGCTGAC-TATTTCCTCCCTGGATTAG-TTTTGGAATCTCCTAACCTTGACAACAGACAAACCTGCTTCACAAA--------ACCA-AC---AA-A----TG-TTTTCAATCAG--CATGTCCTC-AG------------------A-ACAAGGTACTTG------ACTAACATCTGGTGGCAAAGTCACGTCATAAGCCTGGCAA--CAAATAGT-AT-TTGGCAGGTCAGTTTAA---TACAGAGAATCAAGCTCCAGTAGAAGTCC-ACGACAT
gi|1 : TGCTGACCAGAAATAT---AAAAAAGTAGCCAATTACTAAATG-TTGTAGCCGTCGAGTTCTCTTTAGGATTAT---TGTAT-TCTT-TGATGCAAACCACAG-TA-------AAC-GGGATCGTAGTTCTCATGCTGCTGATAACAACCA-TTTTGTTT-CATTTATA---AGGTA-G-CC-CATATCGGAATTAAGTGGAGA-TTTGGGTAATAGA-AATTCTAAATCTGCAGATTTGA-G-TCCA-AATAGGTCGC--GTATTAGACAA--CATAC----ACATTTGTGGTCAGTTGT--GGTCTT---ATCATACTA-TTGCGACAAGGACAAAATCGCTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCA-TCAGGCAACGTCACATCCCATTACATT-CCATTGCAAC----AGAG-CAGGGTGCGAA-----CCCCC-AGCAGCACATCCACTTACTAGACAAG----ACAGCA----CAGTTTA-TACCAAACAGGAACTTG---------CTTTTTTGCACAAACCCGGAGTAAC-ACGTGGGAAATTACATCCATTCACTAATAACAT---TT-GA-A--GTACAG---ACTAATGT-GGACGCAGATGCCCTGGTATATAC-T-ATGTACG--AT-----CTCATGTCACAGTCCTCAGCTTG-TATGAACAG-AAAACGCTGAC-AATTTCTTCTCTGAAGCAA-TTTTGAAATCCCCTGACCTTGACAACAGACAAACCTGCTTCTCAAC--------ACCA-ACAGAAG-A----TG-TTTTCAATCAGAACAAGGTATC-AGACCAGCATCTGGTGGAAAA-ACAAGGTATCAG------ACCATCATCTGCTGGAAAAGTCAAATCACGAGTCTGGCTA--CAAATGGT-AT-TTGTCAGGTCAGTTAAA---TACAACGAATC
gi|4 : gcTGTTGACCAGAAATATCA-AAAAAAGTATATCATTACTAAATG-TTGTAGCCGTCGAGTTCTCATTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAG-TA-------AAC-GGGCTCGTAGTTCTCATGCTGCTGATAACAACCATTTTTGTTT-AATTTATA---AGGTA-A-CC-CATATCGGAATGAAGTGGAGA-TTTGGGTTATAAATATTT-TAAATGCCCAGTTTTGA-G-TCCA-AACAGGTCAT--GTAATAGACAA--CATAC----ACAT---------TTG-T--GGTCTTGTAAT---AATA-ATGCAGTAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCA-TCAGGCAACATTACATCCCTGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAAC----CCCC--AGCAGCGCATCTACTTACCAGATGTG----ACAGCA----CAGTTTA-TATCAAACAGGAACTTG--------TTTTTTTTACACAAATCTGGAGTAAC---ATGGGAAATGACATCCATTCACAAATAACAT---TT-GG-A--GTGCAG---AATAATGT-GGAAGCTGATACCCCGGTATCTCC-T-ATGTACG--AT-----CTTATGTTACAGTCCTCAGCTTG-TATGAACAG-AAAGCGCTGAC-AATTTTCTCCCTGGACCAG-TTTTG
gi|3 : tttcttgcTGTTGACCAGAAAGATCC-AAAAAGGTATTCCATTACTAAATG-TTGTTGTCGTCAAGTACTTGCTTTGATTAT---TGCAT-TCTTTGGATGACAATCTCAG-TA-------AAC-GGGCTTG---CTCCCATGCTGCTGTTGAC-------------T-AATTTATA---AGCTA-A-CCCAG-ATCAAAATTAAGTGGAAT-TTTGGGTAGCAAA-ATT-CCAAATCGGCAGTTCTCA-GCTTCG-A-TAGGTCGT--GTA--------------C----ACAT--------------------------T---AGTA-TTGCGGCAAGGACAAAATCGCTG-GT--------------GGATGGCCATAACAGTCA-ATA-------TTACTCCCCGGTACATT-CCATTGCGATCGATAGAC-CATGGTGTGAATTTAACCCC--AGCAGCACACCCACCTACCTGATATG----ACAGCA----CAGTTTA-TACCAAACAGGAAATCATG--------TTGTTTACATAAACCTGCAGTAAC-ATGTGGG-AATGACATTCATTCACTAATAACAT---TT-GG-A--GT--------------------GCAGA-A----GATATCTCC-T-ACGTACA--AT-----ATCATGTCACAGTCTTCAGCATG-TAT
gi|12 : ttgcTGTTGACCAGAAATATCT-TAAAAGGTATTCCATTACTAAATG-TTGAAGTCGTTGA------GT----AT-AT---TGCAT-TCTT-GGATGTAAACCGCTG-TA-------AA---GGCTTGTAGTTCTCATGCTGCTGATAACAGCCA-TTTTGTTT-AATTGGTA---AGCTA-ACCC-AG-ATCGGAATTAAGGGGATA-TTTGGGTGGTAAA-A-TTCCAAATCCGCAGttgtatctcctgactttgacaacacacaaatgtgctttacaaacttttgtaatcaatagatgttttcaatcagcatgtcctaagagtaaggtactggtatcaaacaagcatctggttgcaaagtcacatcgccagtctgaatttagatactcatgtcggcaacgaagggtaaaattacaaagattcaagctccagtgtaagtccacggcat
gi|20 : gtttcatacTGTTGACCAGAGATATCC-GAAAAGGTATCCCATTGCTAAATG-ATGTAGTCG
gi|18 : ttctttgcTGTTGACCAGAAATATCA-AAAAAAGTATATCATTACTAAATG-TTGTAGCCGTC
gi|17 : tcttgcTGTTGACCAGAGATATCCGAAAAAAGTATCCCATTGCTAAATG-ATGTAGTCG
gi|19 : ttctttgcTGTTGACCAGAGATATCC-GAAA-AGTATCCCATTGCTAAATGAATGTAGTCG
gi|13 : ttctttgcCGAGTTCTCACTGGGATTACGACTGCATATTTT-GTTTGTTAATCACAGTAACAGCACTAACAGGGCT---ATCTCCCATACCACTGGGAGCCGCCA-TTTTGTTTAAATTTAGAATTAGCTATC-CC-AG-ATAGGAAT
gi|9 : T---TGTAA-TCTT-GAATGCAAACCACAG-AA-------AAC-GTGCTCGTAGCTCTGATGATGCTGATAACAACCA-TTTTGTTT-AATTCATA---AGGTA-A-CCCAG-ATCGGAATTAAGTGGAGAATTTGGGTAATAAA-AATTCCAAATCCTCAGCTTTGA-G-TCCA-AACAGGTCGT--GTGATAGGCAA--CATAC----ACAG---------TTT-T--GGTCTT---AT---TCTA-TTACGGCAAGGACAAAATCGTTG-GTTTTGTTTTCATTCTGGATAACTGTAACAGTCA-TTAGGCAAGGTTGTATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCTC--AGCAGCACATCCATTTACCAGATGTGACGTACAGCG----CAGTTTaa
gi|16 : TGATAACAACCA-TTTTGTTT-AATTCATA---AGCTA-A-CCCAG-ATCGAAATTAAGTGGAGA-TTTAGGTAGTATG-AATTCCAAATCCAC-----CGA-G-TCCA-AACAGGTCGT--GTAATA
gi|10 : ATTCATA---AGGTA-A-CCCAG-ATCGGAATTAAG-GGAGA-TTTGTTTAATAA-----------------GCTTCGA-G-TCCA-ATTAGGTCGT--GAAATAGGCAA--CATAC----ACAT---------TTT-T--GGTCTT---AT---ACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAACTATAACAGTCA-TTAGGCAAGGTTGCATCCCGGTACATT-CCATTGCGAC----AGA----------------------------GCACATCCACTTATCAGATGTA----ACAGCA----CAGTTTA-TATCAAACAGGAACTTGGG------TTTTTTTTACACAAACCTGGAGTAAC-AAATGGGAAATGACATCCATTCACTAATAACA
gi|5 : GAATTAA-TGGA----------AAGAAA----TCCAAATCGGCTGCTTTGACG-TGCAGATTAGATCATTTGTAATAGGGAAAGTATACCATTATATT--------GCT-TTGGGTCTT---AT---ATTACTTGTGGCAAGAACAAA-TTGTCGCATTTTATT-AC-TGCTGGGTGGC-----CATGCAGTT---CAACGCT--ACCCCGGCACATTTCCAT-GCGAC----AGAGGCATGGTGTGAA-----CCCCTAAGAGGCACAGCCACTTACCGGTTGTG----ACAGCT----C-GTTTATTACCAAACAGGAA----AGCTTTGCTGTT--------GAACT----GT-------TGGGATGTTTCATCCTGCCATT-ATAACATCTCCT-GA-A--GTGCAG---GATAGTGTGGGAAGC-GATACAT--GTATCTCT---ATGTACGAAATCCATGCCCATGCCATTGTCCTCAGCTTG-AATGAAAAG-AAAGCGATGAC-ATTTTCCTCCCTGGACCGG-TTTCGGTAACTCCTGACCTTGACAACAGACAAACTTGCTTCATAA
gi|11 : ccaaCATT-CAATTGTGGC----TGAA-CATGGTATGTC-----TCCC--AGCAACACACGCGCTTACGGGATGAG----ACAGCACAAGCAGTTTA-TA-GAAATAGGAAATTA--------CTTTGCTTACACAAAACTACAG--ACTCCGTGGGAAA-GACATACACGCACTGACAACAT---TT-GGAA--AT---GCATAATAACGT-GGAAGCAGATGTCTCttttgtttgcaatcaactgattatgtt
gi|6 : cccTGTG----ACAGCA----CAGTTTA-TACCAAACAGGAA---AGA-----TTGCTTTTTACACAAACCTGGAGTAAC-ATGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAG---AATGATGT-GGAAGCAGATGCACCGGTATCTCC-T-ATGCACG--AT-----CTTATGTCACAGTCCTCAGCTTG-TACGAACAG-AAAGCGATGAT-AGGTTCCTCTCTGGACCAATTTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACCACAG---AAGA----TG-TTTTCAATCAG--CATGTCCTCGAG------------------ACACAA-GTACCAG------GCCAGCATCTGGTGGCAAAGTCACATCA----CCAGGCTA--CTAATTGC-GT-CTCTCAGGTCAGTTTGA---TACAAAAAA--A----TCAGTGGAAGTTCAACCACATtttcttttgcacacttcaatattatgtgg
gi|7 : TGTG----ACAGCA----CAGTTTA-TACCAAACAGGAA---AGA-----TTGCTTTTCACAC-AACCTGGAGTAAC-ATGT-GGAAATGACATCCATTCACTAATAACAT---TT-GG-ATGGTACAG---AATGATGT-GGAAGCAGATGCCCCGGTATCTCC-T-ATGCACG--AT-----CTTATGTCACAGTCCTCAGCTCTGTACGAACAG-AAAGCGATGA--TAGGTCCTCTCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACCACAG---AAGA----TG-TTTTCAATCAG--CATGTCCTC-AG------------------A-ACAAGGTACCAG------GCCAGCATCTGGTTGCAAAGTCACATCA----CCAGGCTA--CTAATTGC-GT-CTCTCA-GTCAGTTTGA---TACAAAAAA--A----TCAGTGGAAGTTCAACCACATca
gi|8 : TGTG----ACAGCA----CAGTTTA-TACCAAACAGGAA---AGA------TTGCTTTTACACAAACCTGGAGTAAC-ATGT-GGAAATGACATCCATTCACTAATAACAT---TTGGG-A--GTGCAG---AATGATGT-GGAAGCAGATGCCCCGGTATTTCCTC-ATG-ACG--AT-----CTTATGTCACAGTCCTCAGCTTG-TACGAACAG-AAAGCGATGA--TAGGTCCTCTCTGGACCAA-TTGTGGAA--TCCTGA-CTTGACAACAGACAAACCCG-TTCACAAA--------ACCA-AC---AG-AAGACTGTTTTTCAATCAG--CATGTCCTC-AG------------------A-ACAAGGTACCAG------GCCAGCATCTGGTGGCAAAGTCACATCA----CCAGGCTA--CTAATTGC-GT-CTCTCAGGTCAGTTTGA---TACAAAAAAT-------CAGTGGAAGTCA-ACCACATcac
gi|14 : AAAGAACCTCCATTCACTGGCAACAC---TT-GG-G--ATGCAG---ACTAACGT-AGAAGCAG-TTC-----TATGTCT-ATTTGCACG--TT-----CTTATGTCG-A-----CAGCTTG-TGTGAAAAAGAAAGCAATGACGTATTCTTTTCTTGca
gi|3 : ATCTCCTGACTTTGACAACACACAAATGTGCTTTACAAACTTTTGTAATCA-AT---AG-A----TG-TTTTCAATCAG--CATGTCCTA-AG------------------A-GTAAGGTACTGGTATCAAACAAGCATCTGGTTGCAAAGTCACATCGCCAGTCTG--AATTTAGATACTCATGTCGGCAACGAAGGGTAAAATTACAAAGATTCAAGCTCCAGTGTAAGTCC-ACGGCATac
gi|15 : ttgctgttgaccagaaagatccaaaaaggtattccattactaaatgttgttgtcgtcaagtacttgctttgattattgcattctttggatgacaatctcagtaaacgggcttgctcccatgctgctgttgactaatttataagctaacccagatcaaaattaagtggaattttgggtagcaaaattccaaatcggcagttctcagcttcgataggtcgtgtacacattagtattgcggcaaggacaaaatcgctggtggatggccataacagtcaatattactccccggtacattccattgcgatcgatagaccatggtgtgaatttaaccccagcagcacacccacctacctgatatgacagcacagtttataccaaacaggaaatcatgttgtttacataaacctgcagtaacatgtgggaatgacattcattcactaataacatttggagtgcagaagatatctcctacgtacaatatcatgtcacagtcttcagcatgtatttgtTTTCAATCAG--CATGTCCTC-AG------------------A-GCAAGGTACTAG------ACCAACATC--------AAATAAC-----AAGCCTGGCAA--CAAATAGT-AT-TTGTCAGGTCAGTTTAA---TACAAAGAATCAAGCTCCAATGGACGTCC-ACGACAT
gi|21 : TC-AG------------------A-GCAAGGTACCAA------ACCAGCATCTGTTGGCAAAGTCATATCGCCAGTCTcat
gi|22 : gTAA---TACAAAGAATCAAGCTCCAGTGGAAGTCA-ACGTCAT
Alignments
lowQualScore : 111 22222222 111 1111 333333333333333333 1111 11111 11 555555555555555 111 11111 11111 22222222 1 1 111111 11111 55555555555555 111111 222222222222 1111111 1
lowQualScore : 11 4 4 3 3 1 000 5 5 00000000 5 1 1 0 5 5 777 1 0 4 8 222 00 2 0 2 5 5 66 0 77 2222 77 1 5 222222222222222222 5 5 1 1 0 4 1 5 0000 5 22222 66 3 7777 7777 4 4 555555555555555 4 000 777 4 4 55 4 0 2 4 3 00000 55 00000 4 5 8888 5 1 00000000 3 6 1 7 6 6 5 5 444444 22222 66 888 44444444444444 1 666666 0 1 999999999999 1 1 77 11 1111111 1 1
lowQualScore : .. . . . . . ... . . ........ . . . . . . ... . . . . ... .. . . . . . .. . .. .... .. . . .................. . . . . . . . . .... . ..... .. . .... .... . . ............... . ... ... . . .. . . . . . ..... .. ..... . . .... . . ........ . . . . . . . . ...... ..... .. ... .............. . ...... . . ............ . . .. .. ....... . .
lowQualScore : 88 4 4 5 7 8 000 7 7 77777777 7 7 4 1 0 0 888 0 1 4 9 444 22 0 2 0 0 0 99 4 99 1111 99 3 7 444444444444444444 7 7 4 4 7 3 7 0 6666 0 55555 99 1 7777 7777 0 0 333333333333333 0 222 000 0 0 55 0 9 3 0 0 00000 55 00000 4 0 1111 7 7 77777777 3 7 0 3 7 7 0 0 444444 55555 99 888 77777777777777 0 444444 6 0 333333333333 0 0 99 55 3333333 4 0
consensus : TGTTGACCAGAAATATCCGAAAA-GGTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTA-TACCAAACAGG-AA-TTAGG------TT-TTT-TTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAA--------AACC-ACAGAAGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATC----G-C------AGCCNG------GCTACTA------------ATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
Reference ( family-1271 ) : TGTTGACCAGAAATATCCGAAAA-AGTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGNTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTCGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTACATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCGGATGTG----ACAGCACA----GTTTA-TACCAAACAGG-AA-TTAGG------TN-TTT-TTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNATTTCCTCCCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAA--------AACC-ACANAGGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC----G-C------AGCCNG------GCTACNA------------ATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACNACAT
gi|1 : TGCTGACCAGAAATAT--AAAAA-AGTAGCCAATTACTAAATG-TTGTAGCCGTCGAGTTCTCTTTAGGATTAT---TGTAT-TCTT-TGATGCAAACCACAGTAA--------AC-GGGATCGTAGTTCTCATGCTGCTGATAACAACCATTTT-GTTT-CATTTATA---AGGTAGCCCATATCGGAATTAAGTGGAGA-TTTGGGTAATAGAA-A-TTCTAAATCTGCAGATTTGA-GTCCAAAT-AGGTCGC--GTATTAGACAA--CATAC----ACATT--TGTGG-TCAGTTGTGGTCTTATC---ATACTA-TTGCGACAAGGACAAAATCGCTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACGTCACATCCCATTACATT-CCATTGCAAC----AGAG-CAGGGTGCGAA-----CCCCC-AGCAGCACATCCACTTACTAGACAAG----ACAGCACA----GTTTA-TACCAAACAGG-AA-CTTG--------C-TTT-TTTGCACAAACCCGGAGTAAC-ACGTGGGAAATTACATCCATTCACTAATAACAT---TT-GA-A--GTACAGACTAATGT-GGACGCAGATGCCCTGGTATATACT-ATGTA-----CG--AT-----CTCATGTCACAGTCCTCAGCT-TGTATG-AACAGAAAACGCTGACAATTTCTTCTCTGAAGCAA-TTTTGAAATCCCCTGACCTTGACAACAGACAAACCTGCTTCTCAA--------CACCAACAGAAGA-TG-TTTTCAA-----------TCAGAA-CA-AGGTAT------CAGACCAGCATCTGGTGGAAAAACAAGGTATCAGACCATCATCTG-CTGGAAAAGTCAA------ATCACGAGTCTGGCTACAAATGGTATTTGTCA--GGTCAGTTAAATACAACGAATC
gi|10 : gcATTCATA---AGGTAACCCAGATCGGAATTAAG-GGAGA-TTTGTTTAATA-A-----------------GCTTCGA-GTCCAATT-AGGTCGT--GAAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAACTATAACAGTCATTAGGCAAGGTTGCATCCCGGTACATT-CCATTGCGAC----AG----------------------------AGCACATCCACTTATCAGATGTA----ACAGCACA----GTTTA-TATCAAACAGG-AACTTGGG------TT-TTT-TTTACACAAACCTGGAGTAAC-AAATGGGAAATGACATCCATTCACTAATAACA
gi|11 : CATT-CAATTGTGGC----TGAA-CATGGTATGTC-----TCCC--AGCAACACACGCGCTTACGGGATGAG----ACAGCACAAGCAGTTTA-TAG-AAATAGG-AAATTA---------C-TTTGCTTACACAAAACTACAG--ACTCCGTGGGAAA-GACATACACGCACTGACAACAT---TT-GGAA--ATGCATAATAACGT-GGAAGCAGATGTCTC----TTTCTT-TTGCACACTTCA--AT-----ATTATGT
gi|12 : cccTGTTGACCAGAAATATCTTAAAA-GGTATTCCATTACTAAATG-TTGAAGTCGTTGAGT----------AT-AT---TGCAT-TCTT-GGATGTAAACCGCTGTAA--------A---GGCTTGTAGTTCTCATGCTGCTGATAACAGCCATTTT-GTTT-AATTGGTA---AGCTAACCCAGATCGGAATTAAGGGGATA-TTTGGGTGGTA-AA-A-TTCCAAATCCGCAGgg
gi|13 : gtttcatacCGAGTTCTCACTGGGATTACGACTGCATATTTT-GTTTGTTAATCACAGTAACAGCACTAACAGGGCT---ATCTCCCATACCACTGGGAGCCGCCATTTT-GTTTAAATTTAGAATTAGCTATCCCAGATAGGAAT
gi|14 : AAAGAACCTCCATTCACTGGCAACAC---TT-GG-G--ATGCAGACTAACGT-AGAAGCAGTT----CTATGTCTATT--TGCA-----CG--TT-----CTTATGTCG-A-----CAGCT-TGTGTGAAAAAGAAAGCAATGACGTATTCTTTTCTTGACaa
gi|15 : TTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------TAGACCAACATC-------------AAA--TAA---CA---------------AGCCTG------GCAACAA------------ATAGTATTTGTCA--GGTCAGTTTAATACAAAGAATCAAGCTCCAATGGACGTCC-ACGACAT
gi|16 : TGATAACAACCATTTT-GTTT-AATTCATA---AGCTAACCCAGATCGAAATTAAGTGGAGA-TTTAGGTAGTATGA-A-TTCCAAATCCAC-----CGA-GTCCAAAC-AGGTCGT--GTAATAcat
gi|17 : TGTTGACCAGAGATATCCGAAAAAAGTATCCCATTGCTAAATG-ATGTAGTCG
gi|18 : ttctttgcTGTTGACCAGAAATATCAAAAAA-AGTATATCATTACTAAATG-TTGTAGCCGTC
gi|19 : tcttgcTGTTGACCAGAGATATCCG-AAA-AGTATCCCATTGCTAAATGAATGTAGTCG
gi|2 : ttctttgcTGTTGACCAGAAATATCCAAAAC-GGTATCCCATTACTAAATG-TTGTAGTCGTCGACTTCTCGTTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGAAA--------AC-GAGCTCGTAGCTCTGATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAA-CCAAATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-ATTTCCAAATCCGCAGCTTTGA-GTCCAAGC-AGGTCGT--GTAATAGGCAA--CATAC----ACATG--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAAGACAAAATCGTTG-GTTGTGTTTACATTCTGGATAACTATAACATTCATTAGGCAAGGTTGAATCCCGGCACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTATCAGATGTG----ACAGCACA----GTTTA-TACCAAACAAG-AACTTGGGTTTTTTTT-TTT-TTTACACAAACCTAGAGTAAC-GAGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GT---GAATAATGT-GGAAGCAGATACCCCGGTATCTCCA-ATGTA-----CG--AT-----CTCATGTCACAGTTCTCAGCT-TTTATG-AACAAAAAGCGCTGACTATTTCCTCCCTGGATTAG-TTTTGGAATCTCCTAACCTTGACAACAGACAAACCTGCTTCACAA--------AACC-A-ACA-AA-TG-TTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------TTGACTAACATCTGGTGG-----CAAAG--TCA---CGTC----A-TA-----AGCCTG------GCAACAA------------ATAGTATTTGGCA--GGTCAGTTTAATACAGAGAATCAAGCTCCAGTAGAAGTCC-ACGACAT
gi|20 : TGTTGACCAGAGATATCCGAAAA-GGTATCCCATTGCTAAATG-ATGTAGTCG
gi|21 : ttctttgcTCAGAG-CA-AGGTAC------CAAACCAGCATCTGTTGG-----CAAAG--TCA---TATC----G-C------
gi|22 : gTAATACAAAGAATCAAGCTCCAGTGGAAGTCA-ACGTCATcagtct
gi|3 : TGTTGACCAGAAAGATCCAAAAA-GGTATTCCATTACTAAATG-TTGTTGTCGTCAAGTACTTGCTTTGATTAT---TGCAT-TCTTTGGATGACAATCTCAGTAA--------AC-GGGCTTG---CTCCCATGCTGCTGTTGAC-------------T-AATTTATA---AGCTAACCCAGATCAAAATTAAGTGGAAT-TTTGGGTAGCA-AA-A-TTCCAAATCGGCAGTTCTCA-GCTTCGAT-AGGTCGT--GTA--------------C----ACATT------------------------------AGTA-TTGCGGCAAGGACAAAATCGCTG-GT--------------GGATGGCCATAACAGTCAATA-------TTACTCCCCGGTACATT-CCATTGCGATCGATAGAC-CATGGTGTGAATTTAACCCC--AGCAGCACACCCACCTACCTGATATG----ACAGCACA----GTTTA-TACCAAACAGGAAA-TCA--------TG-TTG-TTTACATAAACCTGCAGTAAC-ATGTGGG-AATGACATTCATTCACTAATAACAT---TT-GG-A--GTGCAGAA----------------------GATATCTCCT-ACGTA-----CA--AT-----ATCATGTCACAGTCTTCAGCA-TGTAca
gi|3 : ttgcATCTCCTGACTTTGACAACACACAAATGTGCTTTACAAACTTTTGTAATC-A-ATA-GA-TG-TTTTCAATCAGCATGTCCTAAGAG-TA-AGGTACTGGTATCAAACAAGCATCTGGTTG-----CAAAG--TCA---CATC----GCC------AGTCTGAATTTAGATACTC------------ATGTCGGCAACGAAGGGTAAAAT---TACAAAGATTCAAGCTCCAGTGTAAGTCC-ACGGCATtttgtatctcctgactttgacaacacacaaatgtgctttacaaacttttgtaatcaatagatgttttcaatcagcatgtcctaagagtaaggtactggtatcaaacaagcatctggttgcaaagtcacatcgccagtctgaatttagatactcatgtcggcaacgaagggtaaaattacaaagattcaagctccagtgtaagtccacggcat
gi|4 : ttgctgttgaccagaaagatccaaaaaggtattccattactaaatgttgttgtcgtcaagtacttgctttgattattgcattctttggatgacaatctcagtaaacgggcttgctcccatgctgctgttgactaatttataagctaacccagatcaaaattaagtggaattttgggtagcaaaattccaaatcggcagttctcagcttcgataggtcgtgtacacattagtattgcggcaaggacaaaatcgctggtggatggccataacagtcaatattactccccggtacattccattgcgatcgatagaccatggtgtgaatttaaccccagcagcacacccacctacctgatatgacagcacagtttataccaaacaggaaatcatgttgtttacataaacctgcagtaacatgtgggaatgacattcattcactaataacatttggagtgcagaagatatctcctacgtacaatatcatgtcacagtcttcagcatgtatttgtTGTTGACCAGAAATATCAAAAAA-AGTATATCATTACTAAATG-TTGTAGCCGTCGAGTTCTCATTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGTTCTCATGCTGCTGATAACAACCATTTTTGTTT-AATTTATA---AGGTAACCCATATCGGAATGAAGTGGAGA-TTTGGGTTATA-AATA-TTTTAAATGCCCAGTTTTGA-GTCCAAAC-AGGTCAT--GTAATAGACAA--CATAC----ACATT--TGTGG-TC-------------TTGTAATAATA-ATGCAGTAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACATTACATCCCTGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCCC-AGCAGCGCATCTACTTACCAGATGTG----ACAGCACA----GTTTA-TATCAAACAGG-AA-CT-TG------TT-TTT-TTTACACAAATCTGGAGTAAC-A--TGGGAAATGACATCCATTCACAAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCTGATACCCCGGTATCTCCT-ATGTA-----CG--AT-----CTTATGTTACAGTCCTCAGCT-TGTATG-AACAGAAAGCGCTGACAATTTTCTCCCTGGACCAG-TTTTG
gi|5 : tttcttgcGAATTAA-TGGA----------AAGA-AA----TCCAAATCGGCTGCTTTGACGTGCAGATTAGATCATTTGTAATAGGGAAAGTATACCATTATATTGCTTTGGGTC-------------TT---ATATTACTTGTGGCAAGAACAAA-TTGTCGCATTTTATT-AC-TGCTGGGTGGCCATG-CAGTT------CAACGCTAC--CCCGGCACATTTCCAT-GCGAC----AGAGGCATGGTGTGAA-----CCCCTAAGAGGCACAGCCACTTACCGGTTGTG----ACAGCTC-----GTTTATTACCAAACAGG-AA---AGC------TT-TGC-TGT---TGAACT----GT-------TGGGATGTTTCATCCTGCCATT-ATAACATCTCCT-GA-A--GTGCAGGATAGTGTGGGAAGC-GATACAT--GTATCT-CT-ATGTA-----CGAAATCCATGCCCATGCCATTGTCCTCAGCT-TGAATG-AAAAGAAAGCGATGACATTTTCCTCCCTGGACCGG-TTTCGGTAACTCCTGACCTTGACAACAGACAAACTTGCTTCATAA--------
gi|6 : ccaaTGTG----ACAGCACA----GTTTA-TACCAAACAGG-AA---AGA------TTGCTT-TTTACACAAACCTGGAGTAAC-ATGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATGATGT-GGAAGCAGATGCACCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGATAGGTTCCTCTCTGGACCAATTTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAA--------AACC-ACAGAAGA-TG-TTTTCAATCAGCATGTCCTC-GAGACACAAGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATttttgtttgcaatcaactgattatgtt
gi|7 : TGTG----ACAGCACA----GTTTA-TACCAAACAGG-AA---AGA------TTGCTT-TTCACACAA-CCTGGAGTAAC-ATGTGG-AAATGACATCCATTCACTAATAACAT---TT-GG-ATGGTACAGAATGATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCTCTGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAA--------AACC-ACAGAAGA-TG-TTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------CAGGCCAGCATCTGGTTG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA---GTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATca
gi|8 : TGTG----ACAGCACA----GTTTA-TACCAAACAGG-AA---AGA------TT-GCT-TTTACACAAACCTGGAGTAAC-ATGT-GGAAATGACATCCATTCACTAATAACAT---TTGGG-A--GTGCAGAATGATGT-GGAAGCAGATGCCCCGGTATTTCCTCATG-A-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTGTGGAA--TCCTGA-CTTGACAACAGACAAACCCG-TTCACAA--------AACCAACAGAAGACTGTTTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAAT-------CAGTGGAAGTCA-ACCACATcac
gi|9 : T---TGTAA-TCTT-GAATGCAAACCACAGAAA--------AC-GTGCTCGTAGCTCTGATGATGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGAATTTGGGTAATA-AA-AATTCCAAATCCTCAGCTTTGA-GTCCAAAC-AGGTCGT--GTGATAGGCAA--CATAC----ACAGT--TTTGG-TC-------------TT---ATTCTA-TTACGGCAAGGACAAAATCGTTG-GTTTTGTTTTCATTCTGGATAACTGTAACAGTCATTAGGCAAGGTTGTATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCTC--AGCAGCACATCCATTTACCAGATGTGACGTACAGCGCA----GTTTca
Alignments
lowQualScore : 111 22222222 111 1111 333333333333333333 1111 11111 11 444444444444444 111 11111 11111 22222222 11 33333333333333333333 111111 33333 111111 1111111 1
lowQualScore : 11 77 4 3 3 1 000 5 5 00000000 5 1 1 0 5 5 777 1 0 4 8 222 00 2 0 5 5 66 0 77 2222 77 1 5 222222222222222222 5 5 1 1 0 4 1 5 0000 5 22222 66 7777 7777 4 4 888888888888888 000 777 4 4 55 4 0 2 4 3 00000 55 00000 4 5 5555 5 1 44444444 6 33 6 6 6 77 99999999999999999999 5 444444 66666 1 666666 2 1 1 77 11 1111111 1 0
lowQualScore : .. .. . . . . ... . . ........ . . . . . . ... . . . . ... .. . . . . .. . .. .... .. . . .................. . . . . . . . . .... . ..... .. .... .... . . ............... ... ... . . .. . . . . . ..... .. ..... . . .... . . ........ . .. . . . .. .................... . ...... ..... . ...... . . . .. .. ....... . .
lowQualScore : 88 11 4 5 7 8 000 7 7 77777777 7 7 4 1 0 0 888 1 1 4 9 444 22 0 2 0 0 99 4 99 1111 99 3 7 444444444444444444 7 7 4 4 7 3 7 0 6666 0 55555 99 7777 7777 0 0 222222222222222 222 000 0 0 55 0 9 3 0 0 00000 55 00000 4 0 9999 7 7 22222222 7 33 7 7 7 99 99999999999999999999 0 444444 77777 0 444444 1 0 0 99 55 3333333 4 7
consensus : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTCAGA------------------G-CA-AGGTAC------CAGACCAGCATCTGGTGGCAAAGTCACATCG-C-AGCCNG------GCTACNAATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
Reference ( family-1271 ) : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTCAGA------------------G-CA-AGGTAC------CAGACCAGCATCTGGTGGCAAAGTCACATCG-C-AGCCNG------GCTACTAATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
gi|1 : TGCTGACCAGAAATAT--AAAAAA-GTAGCCAATTACTAAATG-TTGTAGCCGTCGAGTTCTCTTTAGGATTAT---TGTAT-TCTT-TGATGCAAACCACAGTAA--------AC-GGGATCGTAGTTCTCATGCTGCTGATAACAACCATTTT-GTTT-CATTTATA---AGGTAGCCCATATCGGAATTAAGTGGAGA-TTTGGGTAATAGAA-A-TTCTAAATCTGCAGATTTGA-GTCCAAAT-AGGTCGC--GTATTAGACAA--CATAC----ACATT--TGTGG-TCAGTTGTGGTCTTATC---ATACTA-TTGCGACAAGGACAAAATCGCTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACGTCACATCCCATTACATT-CCATTGCAAC----AGAG-CAGGGTGCGAA-----CCCCC-AGCAGCACATCCACTTACTAGACAAG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-CTTG--------C-TTTTTTGCACAAACCCGGAGTAAC-ACGTGGGAAATTACATCCATTCACTAATAACAT---TT-GA-A--GTACAGACTAATGT-GGACGCAGATGCCCTGGTATATACT-ATGTA-----CG--AT-----CTCATGTCACAGTCCTCAGCT-TGTATG-AACAGAAAACGCTGACAATTTCTTCTCTGAAGCAA-TTTTGAAATCCCCTGACCTTGACAACAGACAAACCTGCTTCTCAAC--------ACC-AACAGA-AGA-TG-TTTTCAATCAGAACAAGGTATCAGACCAGCATCTGGTGGAAAAA-CA-AGGTAT------CAGACCATCATCTGCTGGAAAAGTCAAATCA-CGAGTCTG------GCTACAAATGGTATTTGTCA--GGTCAGTTAAATACAACGAATC
gi|10 : gcATTCATA---AGGTAACCCAGATCGGAATTAAG-GGAGA-TTTGTTTAATA-A-----------------GCTTCGA-GTCCAATT-AGGTCGT--GAAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAACTATAACAGTCATTAGGCAAGGTTGCATCCCGGTACATT-CCATTGCGAC----AG----------------------------AGCACATCCACTTATCAGATGTA----ACAGCACA----GTTTAT-ATCAAACAGG-AACTTGGG------TT-TTTTTTACACAAACCTGGAGTAAC-AAATGGGAAATGACATCCATTCACTAATAACA
gi|11 : CATT-CAATTGTGGC----TGAA-CATGGTATGTC-----TCCC--AGCAACACACGCGCTTACGGGATGAG----ACAGCACAAGCAGTTTAT-AG-AAATAGG-AAATTA--------CT-TTGCTTACACAAAACTACAG--ACTCCGTGGGAAA-GACATACACGCACTGACAACAT---TT-GGAA--ATGCATAATAACGT-GGAAGCAGATGTCTC----TTTCTT-TTGCACACTTCA--AT-----ATTATGT
gi|12 : cccTGTTGACCAGAAATATCTTAAAAG-GTATTCCATTACTAAATG-TTGAAGTCGTTGAGT----------AT-AT---TGCAT-TCTT-GGATGTAAACCGCTGTAA--------A---GGCTTGTAGTTCTCATGCTGCTGATAACAGCCATTTT-GTTT-AATTGGTA---AGCTAACCCAGATCGGAATTAAGGGGATA-TTTGGGTGGTA-AA-A-TTCCAAATCCGCAGgg
gi|13 : gtttcatacCGAGTTCTCACTGGGATTACGACTGCATATTTT-GTTTGTTAATCACAGTAACAGCACTAACAGGGCT---ATCTCCCATACCACTGGGAGCCGCCATTTT-GTTTAAATTTAGAATTAGCTATCCCAGATAGGAAT
gi|14 : AAAGAACCTCCATTCACTGGCAACAC---TT-GG-G--ATGCAGACTAACGT-AGAAGCAGTT----CTATGTCTATT--TGCA-----CG--TT-----CTTATGTCG-A-----CAGCT-TGTGTGAAAAAGAAAGCAATGACGTATTCTTTTCTTGACaa
gi|15 : TTTCAATCAG--CATGTCCTCAGA------------------G-CA-AGGTAC------TAGACCAACATC--------AAATAACA------AGCCTG------GCAACAAATAGTATTTGTCA--GGTCAGTTTAATACAAAGAATCAAGCTCCAATGGACGTCC-ACGACAT
gi|16 : TGATAACAACCATTTT-GTTT-AATTCATA---AGCTAACCCAGATCGAAATTAAGTGGAGA-TTTAGGTAGTATGA-A-TTCCAAATCCAC-----CGA-GTCCAAAC-AGGTCGT--GTAATAcat
gi|17 : TGTTGACCAGAGATATCCGAAAAAAGTATCCCATTGCTAAATG-ATGTAGTCG
gi|18 : ttctttgcTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTC
gi|19 : tcttgcTGTTGACCAGAGATATCCGAAAA--GTATCCCATTGCTAAATGAATGTAGTCG
gi|2 : ttctttgcTGTTGACCAGAAATATCCAAAACG-GTATCCCATTACTAAATG-TTGTAGTCGTCGACTTCTCGTTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGAAA--------AC-GAGCTCGTAGCTCTGATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAA-CCAAATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-ATTTCCAAATCCGCAGCTTTGA-GTCCAAGC-AGGTCGT--GTAATAGGCAA--CATAC----ACATG--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAAGACAAAATCGTTG-GTTGTGTTTACATTCTGGATAACTATAACATTCATTAGGCAAGGTTGAATCCCGGCACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTATCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAAG-AACTTGGGTTTTTTTT-TTTTTTACACAAACCTAGAGTAAC-GAGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GT---GAATAATGT-GGAAGCAGATACCCCGGTATCTCCA-ATGTA-----CG--AT-----CTCATGTCACAGTTCTCAGCT-TTTATG-AACAAAAAGCGCTGACTATTTCCTCCCTGGATTAG-TTTTGGAATCTCCTAACCTTGACAACAGACAAACCTGCTTCACAAA--------ACC-A--ACA-A-A-TG-TTTTCAATCAG--CATGTCCTCAGA------------------A-CA-AGGTAC------TTGACTAACATCTGGTGGCAAAGTCACGTCA-TAAGCCTG------GCAACAAATAGTATTTGGCA--GGTCAGTTTAATACAGAGAATCAAGCTCCAGTAGAAGTCC-ACGACAT
gi|20 : TGTTGACCAGAGATATCCGAAAAG-GTATCCCATTGCTAAATG-ATGTAGTCG
gi|21 : ttctttgcTCAGA------------------G-CA-AGGTAC------CAAACCAGCATCTGTTGGCAAAGTCATATCG-C-
gi|22 : gTAATACAAAGAATCAAGCTCCAGTGGAAGTCA-ACGTCATcagtct
gi|3 : TGTTGACCAGAAAGATCCAAAAAG-GTATTCCATTACTAAATG-TTGTTGTCGTCAAGTACTTGCTTTGATTAT---TGCAT-TCTTTGGATGACAATCTCAGTAA--------AC-GGGCTTG---CTCCCATGCTGCTGTTGAC-------------T-AATTTATA---AGCTAACCCAGATCAAAATTAAGTGGAAT-TTTGGGTAGCA-AA-A-TTCCAAATCGGCAGTTCTCA-GCTTCGAT-AGGTCGT--GTA--------------C----ACATT------------------------------AGTA-TTGCGGCAAGGACAAAATCGCTG-GT--------------GGATGGCCATAACAGTCAATA-------TTACTCCCCGGTACATT-CCATTGCGATCGATAGAC-CATGGTGTGAATTTAACCCC--AGCAGCACACCCACCTACCTGATATG----ACAGCACA----GTTTAT-ACCAAACAGGAAA-TCATG---------TTGTTTACATAAACCTGCAGTAAC-ATGTGGG-AATGACATTCATTCACTAATAACAT---TT-GG-A--GTGCAGAA----------------------GATATCTCCT-ACGTA-----CA--AT-----ATCATGTCACAGTCTTCAGCA-TGTAca
gi|3 : ttgcATCTCCTGACTTTGACAACACACAAATGTGCTTTACAAACTTTTGTAATC-A----ATAGA-TG-TTTTCAATCAG--CATGTCCTAAGA------------------G-TA-AGGTACTGGTATCAAACAAGCATCTGGTTGCAAAGTCACATCGCC-AGTCTGAATTTAGATACTCATGTCGGCAACGAAGGGTAAAAT---TACAAAGATTCAAGCTCCAGTGTAAGTCC-ACGGCATtttgtatctcctgactttgacaacacacaaatgtgctttacaaacttttgtaatcaatagatgttttcaatcagcatgtcctaagagtaaggtactggtatcaaacaagcatctggttgcaaagtcacatcgccagtctgaatttagatactcatgtcggcaacgaagggtaaaattacaaagattcaagctccagtgtaagtccacggcat
gi|4 : ttgctgttgaccagaaagatccaaaaaggtattccattactaaatgttgttgtcgtcaagtacttgctttgattattgcattctttggatgacaatctcagtaaacgggcttgctcccatgctgctgttgactaatttataagctaacccagatcaaaattaagtggaattttgggtagcaaaattccaaatcggcagttctcagcttcgataggtcgtgtacacattagtattgcggcaaggacaaaatcgctggtggatggccataacagtcaatattactccccggtacattccattgcgatcgatagaccatggtgtgaatttaaccccagcagcacacccacctacctgatatgacagcacagtttataccaaacaggaaatcatgttgtttacataaacctgcagtaacatgtgggaatgacattcattcactaataacatttggagtgcagaagatatctcctacgtacaatatcatgtcacagtcttcagcatgtatttgtTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTCGAGTTCTCATTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGTTCTCATGCTGCTGATAACAACCATTTTTGTTT-AATTTATA---AGGTAACCCATATCGGAATGAAGTGGAGA-TTTGGGTTATA-AATA-TTTTAAATGCCCAGTTTTGA-GTCCAAAC-AGGTCAT--GTAATAGACAA--CATAC----ACATT--TGTGG-TC-------------TTGTAATAATA-ATGCAGTAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACATTACATCCCTGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCCC-AGCAGCGCATCTACTTACCAGATGTG----ACAGCACA----GTTTAT-ATCAAACAGG-AA-CT-TG------TT-TTTTTTACACAAATCTGGAGTAAC-A--TGGGAAATGACATCCATTCACAAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCTGATACCCCGGTATCTCCT-ATGTA-----CG--AT-----CTTATGTTACAGTCCTCAGCT-TGTATG-AACAGAAAGCGCTGACAATTTTCTCCCTGGACCAG-TTTTG
gi|5 : tttcttgcGAATTAA-TGGA----------AAGA-AA----TCCAAATCGGCTGCTTTGACGTGCAGATTAGATCATTTGTAATAGGGAAAGTATACCATTATATTGCTTTGGGTC-------------TT---ATATTACTTGTGGCAAGAACAAA-TTGTCGCATTTTATT-AC-TGCTGGGTGGCCATG-CAGTT------CAACGCTAC--CCCGGCACATTTCCAT-GCGAC----AGAGGCATGGTGTGAA-----CCCCTAAGAGGCACAGCCACTTACCGGTTGTG----ACAGCTC-----GTTTATTACCAAACAGG-AA---AGC------TT-TGCTGT---TGAACT----GT-------TGGGATGTTTCATCCTGCCATT-ATAACATCTCCT-GA-A--GTGCAGGATAGTGTGGGAAGC-GATACAT--GTATCT-CT-ATGTA-----CGAAATCCATGCCCATGCCATTGTCCTCAGCT-TGAATG-AAAAGAAAGCGATGACATTTTCCTCCCTGGACCGG-TTTCGGTAACTCCTGACCTTGACAACAGACAAACTTGCTTCATAA
gi|6 : ccaaTGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTTACACAAACCTGGAGTAAC-ATGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATGATGT-GGAAGCAGATGCACCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGATAGGTTCCTCTCTGGACCAATTTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTC-GA------------------GACACAAGTAC------CAGGCCAGCATCTGGTGGCAAAGTCACATC-----ACCAG------GCTACTAATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATttttgtttgcaatcaactgattatgtt
gi|7 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTCACACAA-CCTGGAGTAAC-ATGTGG-AAATGACATCCATTCACTAATAACAT---TT-GG-ATGGTACAGAATGATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCTCTGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTCAGA------------------A-CA-AGGTAC------CAGGCCAGCATCTGGTTGCAAAGTCACATC-----ACCAG------GCTACTAATTGCGTCTCTCA---GTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATca
gi|8 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TT-GCTTTTACACAAACCTGGAGTAAC-ATGT-GGAAATGACATCCATTCACTAATAACAT---TTGGG-A--GTGCAGAATGATGT-GGAAGCAGATGCCCCGGTATTTCCTCATG-A-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTGTGGAA--TCCTGA-CTTGACAACAGACAAACCCG-TTCACAAA--------ACCAA-CAGA-AGACTGTTTTTCAATCAG--CATGTCCTCAGA------------------A-CA-AGGTAC------CAGGCCAGCATCTGGTGGCAAAGTCACATC-----ACCAG------GCTACTAATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAAT-------CAGTGGAAGTCA-ACCACATcac
gi|9 : T---TGTAA-TCTT-GAATGCAAACCACAGAAA--------AC-GTGCTCGTAGCTCTGATGATGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGAATTTGGGTAATA-AA-AATTCCAAATCCTCAGCTTTGA-GTCCAAAC-AGGTCGT--GTGATAGGCAA--CATAC----ACAGT--TTTGG-TC-------------TT---ATTCTA-TTACGGCAAGGACAAAATCGTTG-GTTTTGTTTTCATTCTGGATAACTGTAACAGTCATTAGGCAAGGTTGTATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCTC--AGCAGCACATCCATTTACCAGATGTGACGTACAGCGCA----GTTTca
Alignments
lowQualScore : 111 22222222 111 1111 333333333333333333 1111 11111 11 444444444444444 111 11111 11111 22222222 1 111111 11111 55555555555555 111111 222222222222 1111111 1
lowQualScore : 11 77 4 3 3 1 000 5 5 00000000 5 1 1 0 5 5 777 1 0 4 8 222 00 2 0 5 5 66 0 77 2222 77 1 5 222222222222222222 5 5 1 1 0 4 1 5 0000 5 22222 66 7777 7777 4 4 888888888888888 000 777 4 4 55 4 0 2 4 3 00000 55 00000 4 5 5555 5 1 44444444 3 6 6 6 6 5 5 444444 22222 66 888 44444444444444 1 666666 0 1 999999999999 1 1 77 11 1111111 1 0
lowQualScore : .. .. . . . . ... . . ........ . . . . . . ... . . . . ... .. . . . . .. . .. .... .. . . .................. . . . . . . . . .... . ..... .. .... .... . . ............... ... ... . . .. . . . . . ..... .. ..... . . .... . . ........ . . . . . . . ...... ..... .. ... .............. . ...... . . ............ . . .. .. ....... . .
lowQualScore : 88 11 4 5 7 8 000 7 7 77777777 7 7 4 1 0 0 888 1 1 4 9 444 22 0 2 0 0 99 4 99 1111 99 3 7 444444444444444444 7 7 4 4 7 3 7 0 6666 0 55555 99 7777 7777 0 0 222222222222222 222 000 0 0 55 0 9 3 0 0 00000 55 00000 4 0 9999 7 7 22222222 3 7 7 7 7 0 0 444444 55555 99 888 77777777777777 0 444444 6 0 333333333333 0 0 99 55 3333333 4 7
consensus : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATC----G-C------AGCCNG------GCTACTA------------ATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
Reference ( family-1271 ) : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATC----G-C------AGCCNG------GCTACNA------------ATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
gi|1 : TGCTGACCAGAAATAT--AAAAAA-GTAGCCAATTACTAAATG-TTGTAGCCGTCGAGTTCTCTTTAGGATTAT---TGTAT-TCTT-TGATGCAAACCACAGTAA--------AC-GGGATCGTAGTTCTCATGCTGCTGATAACAACCATTTT-GTTT-CATTTATA---AGGTAGCCCATATCGGAATTAAGTGGAGA-TTTGGGTAATAGAA-A-TTCTAAATCTGCAGATTTGA-GTCCAAAT-AGGTCGC--GTATTAGACAA--CATAC----ACATT--TGTGG-TCAGTTGTGGTCTTATC---ATACTA-TTGCGACAAGGACAAAATCGCTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACGTCACATCCCATTACATT-CCATTGCAAC----AGAG-CAGGGTGCGAA-----CCCCC-AGCAGCACATCCACTTACTAGACAAG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-CTTG--------C-TTTTTTGCACAAACCCGGAGTAAC-ACGTGGGAAATTACATCCATTCACTAATAACAT---TT-GA-A--GTACAGACTAATGT-GGACGCAGATGCCCTGGTATATACT-ATGTA-----CG--AT-----CTCATGTCACAGTCCTCAGCT-TGTATG-AACAGAAAACGCTGACAATTTCTTCTCTGAAGCAA-TTTTGAAATCCCCTGACCTTGACAACAGACAAACCTGCTTCTCAAC--------ACCAACAGA-AGA-TG-TTTTCAA-----------TCAGAA-CA-AGGTAT------CAGACCAGCATCTGGTGGAAAAACAAGGTATCAGACCATCATCTG-CTGGAAAAGTCAA------ATCACGAGTCTGGCTACAAATGGTATTTGTCA--GGTCAGTTAAATACAACGAATC
gi|10 : gcATTCATA---AGGTAACCCAGATCGGAATTAAG-GGAGA-TTTGTTTAATA-A-----------------GCTTCGA-GTCCAATT-AGGTCGT--GAAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAACTATAACAGTCATTAGGCAAGGTTGCATCCCGGTACATT-CCATTGCGAC----AG----------------------------AGCACATCCACTTATCAGATGTA----ACAGCACA----GTTTAT-ATCAAACAGG-AACTTGGG------TT-TTTTTTACACAAACCTGGAGTAAC-AAATGGGAAATGACATCCATTCACTAATAACA
gi|11 : CATT-CAATTGTGGC----TGAA-CATGGTATGTC-----TCCC--AGCAACACACGCGCTTACGGGATGAG----ACAGCACAAGCAGTTTAT-AG-AAATAGG-AAATTA--------CT-TTGCTTACACAAAACTACAG--ACTCCGTGGGAAA-GACATACACGCACTGACAACAT---TT-GGAA--ATGCATAATAACGT-GGAAGCAGATGTCTC----TTTCTT-TTGCACACTTCA--AT-----ATTATGT
gi|12 : cccTGTTGACCAGAAATATCTTAAAAG-GTATTCCATTACTAAATG-TTGAAGTCGTTGAGT----------AT-AT---TGCAT-TCTT-GGATGTAAACCGCTGTAA--------A---GGCTTGTAGTTCTCATGCTGCTGATAACAGCCATTTT-GTTT-AATTGGTA---AGCTAACCCAGATCGGAATTAAGGGGATA-TTTGGGTGGTA-AA-A-TTCCAAATCCGCAGgg
gi|13 : gtttcatacCGAGTTCTCACTGGGATTACGACTGCATATTTT-GTTTGTTAATCACAGTAACAGCACTAACAGGGCT---ATCTCCCATACCACTGGGAGCCGCCATTTT-GTTTAAATTTAGAATTAGCTATCCCAGATAGGAAT
gi|14 : AAAGAACCTCCATTCACTGGCAACAC---TT-GG-G--ATGCAGACTAACGT-AGAAGCAGTT----CTATGTCTATT--TGCA-----CG--TT-----CTTATGTCG-A-----CAGCT-TGTGTGAAAAAGAAAGCAATGACGTATTCTTTTCTTGACaa
gi|15 : TTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------TAGACCAACATC-------------AAA--TAA---CA---------------AGCCTG------GCAACAA------------ATAGTATTTGTCA--GGTCAGTTTAATACAAAGAATCAAGCTCCAATGGACGTCC-ACGACAT
gi|16 : TGATAACAACCATTTT-GTTT-AATTCATA---AGCTAACCCAGATCGAAATTAAGTGGAGA-TTTAGGTAGTATGA-A-TTCCAAATCCAC-----CGA-GTCCAAAC-AGGTCGT--GTAATAcat
gi|17 : TGTTGACCAGAGATATCCGAAAAAAGTATCCCATTGCTAAATG-ATGTAGTCG
gi|18 : ttctttgcTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTC
gi|19 : tcttgcTGTTGACCAGAGATATCCGAAAA--GTATCCCATTGCTAAATGAATGTAGTCG
gi|2 : ttctttgcTGTTGACCAGAAATATCCAAAACG-GTATCCCATTACTAAATG-TTGTAGTCGTCGACTTCTCGTTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGAAA--------AC-GAGCTCGTAGCTCTGATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAA-CCAAATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-ATTTCCAAATCCGCAGCTTTGA-GTCCAAGC-AGGTCGT--GTAATAGGCAA--CATAC----ACATG--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAAGACAAAATCGTTG-GTTGTGTTTACATTCTGGATAACTATAACATTCATTAGGCAAGGTTGAATCCCGGCACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTATCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAAG-AACTTGGGTTTTTTTT-TTTTTTACACAAACCTAGAGTAAC-GAGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GT---GAATAATGT-GGAAGCAGATACCCCGGTATCTCCA-ATGTA-----CG--AT-----CTCATGTCACAGTTCTCAGCT-TTTATG-AACAAAAAGCGCTGACTATTTCCTCCCTGGATTAG-TTTTGGAATCTCCTAACCTTGACAACAGACAAACCTGCTTCACAAA--------ACC-A-ACA-A-A-TG-TTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------TTGACTAACATCTGGTGG-----CAAAG--TCA---CGTC----A-TA-----AGCCTG------GCAACAA------------ATAGTATTTGGCA--GGTCAGTTTAATACAGAGAATCAAGCTCCAGTAGAAGTCC-ACGACAT
gi|20 : TGTTGACCAGAGATATCCGAAAAG-GTATCCCATTGCTAAATG-ATGTAGTCG
gi|21 : ttctttgcTCAGAG-CA-AGGTAC------CAAACCAGCATCTGTTGG-----CAAAG--TCA---TATC----G-C------
gi|22 : gTAATACAAAGAATCAAGCTCCAGTGGAAGTCA-ACGTCATcagtct
gi|3 : TGTTGACCAGAAAGATCCAAAAAG-GTATTCCATTACTAAATG-TTGTTGTCGTCAAGTACTTGCTTTGATTAT---TGCAT-TCTTTGGATGACAATCTCAGTAA--------AC-GGGCTTG---CTCCCATGCTGCTGTTGAC-------------T-AATTTATA---AGCTAACCCAGATCAAAATTAAGTGGAAT-TTTGGGTAGCA-AA-A-TTCCAAATCGGCAGTTCTCA-GCTTCGAT-AGGTCGT--GTA--------------C----ACATT------------------------------AGTA-TTGCGGCAAGGACAAAATCGCTG-GT--------------GGATGGCCATAACAGTCAATA-------TTACTCCCCGGTACATT-CCATTGCGATCGATAGAC-CATGGTGTGAATTTAACCCC--AGCAGCACACCCACCTACCTGATATG----ACAGCACA----GTTTAT-ACCAAACAGGAAA-TCATG---------TTGTTTACATAAACCTGCAGTAAC-ATGTGGG-AATGACATTCATTCACTAATAACAT---TT-GG-A--GTGCAGAA----------------------GATATCTCCT-ACGTA-----CA--AT-----ATCATGTCACAGTCTTCAGCA-TGTAca
gi|3 : ttgcATCTCCTGACTTTGACAACACACAAATGTGCTTTACAAACTTTTGTAATC-A---ATAGA-TG-TTTTCAATCAGCATGTCCTAAGAG-TA-AGGTACTGGTATCAAACAAGCATCTGGTTG-----CAAAG--TCA---CATC----GCC------AGTCTGAATTTAGATACTC------------ATGTCGGCAACGAAGGGTAAAAT---TACAAAGATTCAAGCTCCAGTGTAAGTCC-ACGGCATtttgtatctcctgactttgacaacacacaaatgtgctttacaaacttttgtaatcaatagatgttttcaatcagcatgtcctaagagtaaggtactggtatcaaacaagcatctggttgcaaagtcacatcgccagtctgaatttagatactcatgtcggcaacgaagggtaaaattacaaagattcaagctccagtgtaagtccacggcat
gi|4 : ttgctgttgaccagaaagatccaaaaaggtattccattactaaatgttgttgtcgtcaagtacttgctttgattattgcattctttggatgacaatctcagtaaacgggcttgctcccatgctgctgttgactaatttataagctaacccagatcaaaattaagtggaattttgggtagcaaaattccaaatcggcagttctcagcttcgataggtcgtgtacacattagtattgcggcaaggacaaaatcgctggtggatggccataacagtcaatattactccccggtacattccattgcgatcgatagaccatggtgtgaatttaaccccagcagcacacccacctacctgatatgacagcacagtttataccaaacaggaaatcatgttgtttacataaacctgcagtaacatgtgggaatgacattcattcactaataacatttggagtgcagaagatatctcctacgtacaatatcatgtcacagtcttcagcatgtatttgtTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTCGAGTTCTCATTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGTTCTCATGCTGCTGATAACAACCATTTTTGTTT-AATTTATA---AGGTAACCCATATCGGAATGAAGTGGAGA-TTTGGGTTATA-AATA-TTTTAAATGCCCAGTTTTGA-GTCCAAAC-AGGTCAT--GTAATAGACAA--CATAC----ACATT--TGTGG-TC-------------TTGTAATAATA-ATGCAGTAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACATTACATCCCTGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCCC-AGCAGCGCATCTACTTACCAGATGTG----ACAGCACA----GTTTAT-ATCAAACAGG-AA-CT-TG------TT-TTTTTTACACAAATCTGGAGTAAC-A--TGGGAAATGACATCCATTCACAAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCTGATACCCCGGTATCTCCT-ATGTA-----CG--AT-----CTTATGTTACAGTCCTCAGCT-TGTATG-AACAGAAAGCGCTGACAATTTTCTCCCTGGACCAG-TTTTG
gi|5 : tttcttgcGAATTAA-TGGA----------AAGA-AA----TCCAAATCGGCTGCTTTGACGTGCAGATTAGATCATTTGTAATAGGGAAAGTATACCATTATATTGCTTTGGGTC-------------TT---ATATTACTTGTGGCAAGAACAAA-TTGTCGCATTTTATT-AC-TGCTGGGTGGCCATG-CAGTT------CAACGCTAC--CCCGGCACATTTCCAT-GCGAC----AGAGGCATGGTGTGAA-----CCCCTAAGAGGCACAGCCACTTACCGGTTGTG----ACAGCTC-----GTTTATTACCAAACAGG-AA---AGC------TT-TGCTGT---TGAACT----GT-------TGGGATGTTTCATCCTGCCATT-ATAACATCTCCT-GA-A--GTGCAGGATAGTGTGGGAAGC-GATACAT--GTATCT-CT-ATGTA-----CGAAATCCATGCCCATGCCATTGTCCTCAGCT-TGAATG-AAAAGAAAGCGATGACATTTTCCTCCCTGGACCGG-TTTCGGTAACTCCTGACCTTGACAACAGACAAACTTGCTTCATAA
gi|6 : ccaaTGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTTACACAAACCTGGAGTAAC-ATGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATGATGT-GGAAGCAGATGCACCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGATAGGTTCCTCTCTGGACCAATTTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTC-GAGACACAAGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATttttgtttgcaatcaactgattatgtt
gi|7 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTCACACAA-CCTGGAGTAAC-ATGTGG-AAATGACATCCATTCACTAATAACAT---TT-GG-ATGGTACAGAATGATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCTCTGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------CAGGCCAGCATCTGGTTG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA---GTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATca
gi|8 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TT-GCTTTTACACAAACCTGGAGTAAC-ATGT-GGAAATGACATCCATTCACTAATAACAT---TTGGG-A--GTGCAGAATGATGT-GGAAGCAGATGCCCCGGTATTTCCTCATG-A-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTGTGGAA--TCCTGA-CTTGACAACAGACAAACCCG-TTCACAAA--------ACCAACAGA-AGACTGTTTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAAT-------CAGTGGAAGTCA-ACCACATcac
gi|9 : T---TGTAA-TCTT-GAATGCAAACCACAGAAA--------AC-GTGCTCGTAGCTCTGATGATGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGAATTTGGGTAATA-AA-AATTCCAAATCCTCAGCTTTGA-GTCCAAAC-AGGTCGT--GTGATAGGCAA--CATAC----ACAGT--TTTGG-TC-------------TT---ATTCTA-TTACGGCAAGGACAAAATCGTTG-GTTTTGTTTTCATTCTGGATAACTGTAACAGTCATTAGGCAAGGTTGTATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCTC--AGCAGCACATCCATTTACCAGATGTGACGTACAGCGCA----GTTTca
Alignments
lowQualScore : 111 22222222 111 1111 333333333333333333 1111 11111 11 444444444444444 111 11111 11111 22222222 11 33333333333333333333 111111 33333 111111 1111111 1
lowQualScore : 11 77 4 3 3 1 000 5 5 00000000 5 1 1 0 5 5 777 1 0 4 8 222 00 2 0 5 5 66 0 77 2222 77 1 5 222222222222222222 5 5 1 1 0 4 1 5 0000 5 22222 66 7777 7777 4 4 888888888888888 000 777 4 4 55 4 0 2 4 3 00000 55 00000 4 5 5555 5 1 44444444 6 33 6 6 6 77 99999999999999999999 5 444444 66666 1 666666 2 1 1 77 11 1111111 1 0
lowQualScore : .. .. . . . . ... . . ........ . . . . . . ... . . . . ... .. . . . . .. . .. .... .. . . .................. . . . . . . . . .... . ..... .. .... .... . . ............... ... ... . . .. . . . . . ..... .. ..... . . .... . . ........ . .. . . . .. .................... . ...... ..... . ...... . . . .. .. ....... . .
lowQualScore : 88 11 4 5 7 8 000 7 7 77777777 7 7 4 1 0 0 888 1 1 4 9 444 22 0 2 0 0 99 4 99 1111 99 3 7 444444444444444444 7 7 4 4 7 3 7 0 6666 0 55555 99 7777 7777 0 0 222222222222222 222 000 0 0 55 0 9 3 0 0 00000 55 00000 4 0 9999 7 7 22222222 7 33 7 7 7 99 99999999999999999999 0 444444 77777 0 444444 1 0 0 99 55 3333333 4 7
consensus : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTCAGA------------------G-CA-AGGTAC------CAGACCAGCATCTGGTGGCAAAGTCACATCG-C-AGCCNG------GCTACNAATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
Reference ( family-1271 ) : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTCAGA------------------G-CA-AGGTAC------CAGACCAGCATCTGGTGGCAAAGTCACATCG-C-AGCCNG------GCTACTAATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
gi|1 : TGCTGACCAGAAATAT--AAAAAA-GTAGCCAATTACTAAATG-TTGTAGCCGTCGAGTTCTCTTTAGGATTAT---TGTAT-TCTT-TGATGCAAACCACAGTAA--------AC-GGGATCGTAGTTCTCATGCTGCTGATAACAACCATTTT-GTTT-CATTTATA---AGGTAGCCCATATCGGAATTAAGTGGAGA-TTTGGGTAATAGAA-A-TTCTAAATCTGCAGATTTGA-GTCCAAAT-AGGTCGC--GTATTAGACAA--CATAC----ACATT--TGTGG-TCAGTTGTGGTCTTATC---ATACTA-TTGCGACAAGGACAAAATCGCTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACGTCACATCCCATTACATT-CCATTGCAAC----AGAG-CAGGGTGCGAA-----CCCCC-AGCAGCACATCCACTTACTAGACAAG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-CTTG--------C-TTTTTTGCACAAACCCGGAGTAAC-ACGTGGGAAATTACATCCATTCACTAATAACAT---TT-GA-A--GTACAGACTAATGT-GGACGCAGATGCCCTGGTATATACT-ATGTA-----CG--AT-----CTCATGTCACAGTCCTCAGCT-TGTATG-AACAGAAAACGCTGACAATTTCTTCTCTGAAGCAA-TTTTGAAATCCCCTGACCTTGACAACAGACAAACCTGCTTCTCAAC--------ACC-AACAGA-AGA-TG-TTTTCAATCAGAACAAGGTATCAGACCAGCATCTGGTGGAAAAA-CA-AGGTAT------CAGACCATCATCTGCTGGAAAAGTCAAATCA-CGAGTCTG------GCTACAAATGGTATTTGTCA--GGTCAGTTAAATACAACGAATC
gi|10 : gcATTCATA---AGGTAACCCAGATCGGAATTAAG-GGAGA-TTTGTTTAATA-A-----------------GCTTCGA-GTCCAATT-AGGTCGT--GAAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAACTATAACAGTCATTAGGCAAGGTTGCATCCCGGTACATT-CCATTGCGAC----AG----------------------------AGCACATCCACTTATCAGATGTA----ACAGCACA----GTTTAT-ATCAAACAGG-AACTTGGG------TT-TTTTTTACACAAACCTGGAGTAAC-AAATGGGAAATGACATCCATTCACTAATAACA
gi|11 : CATT-CAATTGTGGC----TGAA-CATGGTATGTC-----TCCC--AGCAACACACGCGCTTACGGGATGAG----ACAGCACAAGCAGTTTAT-AG-AAATAGG-AAATTA--------CT-TTGCTTACACAAAACTACAG--ACTCCGTGGGAAA-GACATACACGCACTGACAACAT---TT-GGAA--ATGCATAATAACGT-GGAAGCAGATGTCTC----TTTCTT-TTGCACACTTCA--AT-----ATTATGT
gi|12 : cccTGTTGACCAGAAATATCTTAAAAG-GTATTCCATTACTAAATG-TTGAAGTCGTTGAGT----------AT-AT---TGCAT-TCTT-GGATGTAAACCGCTGTAA--------A---GGCTTGTAGTTCTCATGCTGCTGATAACAGCCATTTT-GTTT-AATTGGTA---AGCTAACCCAGATCGGAATTAAGGGGATA-TTTGGGTGGTA-AA-A-TTCCAAATCCGCAGgg
gi|13 : gtttcatacCGAGTTCTCACTGGGATTACGACTGCATATTTT-GTTTGTTAATCACAGTAACAGCACTAACAGGGCT---ATCTCCCATACCACTGGGAGCCGCCATTTT-GTTTAAATTTAGAATTAGCTATCCCAGATAGGAAT
gi|14 : AAAGAACCTCCATTCACTGGCAACAC---TT-GG-G--ATGCAGACTAACGT-AGAAGCAGTT----CTATGTCTATT--TGCA-----CG--TT-----CTTATGTCG-A-----CAGCT-TGTGTGAAAAAGAAAGCAATGACGTATTCTTTTCTTGACaa
gi|15 : TTTCAATCAG--CATGTCCTCAGA------------------G-CA-AGGTAC------TAGACCAACATC--------AAATAACA------AGCCTG------GCAACAAATAGTATTTGTCA--GGTCAGTTTAATACAAAGAATCAAGCTCCAATGGACGTCC-ACGACAT
gi|16 : TGATAACAACCATTTT-GTTT-AATTCATA---AGCTAACCCAGATCGAAATTAAGTGGAGA-TTTAGGTAGTATGA-A-TTCCAAATCCAC-----CGA-GTCCAAAC-AGGTCGT--GTAATAcat
gi|17 : TGTTGACCAGAGATATCCGAAAAAAGTATCCCATTGCTAAATG-ATGTAGTCG
gi|18 : ttctttgcTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTC
gi|19 : tcttgcTGTTGACCAGAGATATCCGAAAA--GTATCCCATTGCTAAATGAATGTAGTCG
gi|2 : ttctttgcTGTTGACCAGAAATATCCAAAACG-GTATCCCATTACTAAATG-TTGTAGTCGTCGACTTCTCGTTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGAAA--------AC-GAGCTCGTAGCTCTGATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAA-CCAAATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-ATTTCCAAATCCGCAGCTTTGA-GTCCAAGC-AGGTCGT--GTAATAGGCAA--CATAC----ACATG--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAAGACAAAATCGTTG-GTTGTGTTTACATTCTGGATAACTATAACATTCATTAGGCAAGGTTGAATCCCGGCACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTATCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAAG-AACTTGGGTTTTTTTT-TTTTTTACACAAACCTAGAGTAAC-GAGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GT---GAATAATGT-GGAAGCAGATACCCCGGTATCTCCA-ATGTA-----CG--AT-----CTCATGTCACAGTTCTCAGCT-TTTATG-AACAAAAAGCGCTGACTATTTCCTCCCTGGATTAG-TTTTGGAATCTCCTAACCTTGACAACAGACAAACCTGCTTCACAAA--------ACC-A--ACA-A-A-TG-TTTTCAATCAG--CATGTCCTCAGA------------------A-CA-AGGTAC------TTGACTAACATCTGGTGGCAAAGTCACGTCA-TAAGCCTG------GCAACAAATAGTATTTGGCA--GGTCAGTTTAATACAGAGAATCAAGCTCCAGTAGAAGTCC-ACGACAT
gi|20 : TGTTGACCAGAGATATCCGAAAAG-GTATCCCATTGCTAAATG-ATGTAGTCG
gi|21 : ttctttgcTCAGA------------------G-CA-AGGTAC------CAAACCAGCATCTGTTGGCAAAGTCATATCG-C-
gi|22 : gTAATACAAAGAATCAAGCTCCAGTGGAAGTCA-ACGTCATcagtct
gi|3 : TGTTGACCAGAAAGATCCAAAAAG-GTATTCCATTACTAAATG-TTGTTGTCGTCAAGTACTTGCTTTGATTAT---TGCAT-TCTTTGGATGACAATCTCAGTAA--------AC-GGGCTTG---CTCCCATGCTGCTGTTGAC-------------T-AATTTATA---AGCTAACCCAGATCAAAATTAAGTGGAAT-TTTGGGTAGCA-AA-A-TTCCAAATCGGCAGTTCTCA-GCTTCGAT-AGGTCGT--GTA--------------C----ACATT------------------------------AGTA-TTGCGGCAAGGACAAAATCGCTG-GT--------------GGATGGCCATAACAGTCAATA-------TTACTCCCCGGTACATT-CCATTGCGATCGATAGAC-CATGGTGTGAATTTAACCCC--AGCAGCACACCCACCTACCTGATATG----ACAGCACA----GTTTAT-ACCAAACAGGAAA-TCATG---------TTGTTTACATAAACCTGCAGTAAC-ATGTGGG-AATGACATTCATTCACTAATAACAT---TT-GG-A--GTGCAGAA----------------------GATATCTCCT-ACGTA-----CA--AT-----ATCATGTCACAGTCTTCAGCA-TGTAca
gi|3 : ttgcATCTCCTGACTTTGACAACACACAAATGTGCTTTACAAACTTTTGTAATC-A----ATAGA-TG-TTTTCAATCAG--CATGTCCTAAGA------------------G-TA-AGGTACTGGTATCAAACAAGCATCTGGTTGCAAAGTCACATCGCC-AGTCTGAATTTAGATACTCATGTCGGCAACGAAGGGTAAAAT---TACAAAGATTCAAGCTCCAGTGTAAGTCC-ACGGCATtttgtatctcctgactttgacaacacacaaatgtgctttacaaacttttgtaatcaatagatgttttcaatcagcatgtcctaagagtaaggtactggtatcaaacaagcatctggttgcaaagtcacatcgccagtctgaatttagatactcatgtcggcaacgaagggtaaaattacaaagattcaagctccagtgtaagtccacggcat
gi|4 : ttgctgttgaccagaaagatccaaaaaggtattccattactaaatgttgttgtcgtcaagtacttgctttgattattgcattctttggatgacaatctcagtaaacgggcttgctcccatgctgctgttgactaatttataagctaacccagatcaaaattaagtggaattttgggtagcaaaattccaaatcggcagttctcagcttcgataggtcgtgtacacattagtattgcggcaaggacaaaatcgctggtggatggccataacagtcaatattactccccggtacattccattgcgatcgatagaccatggtgtgaatttaaccccagcagcacacccacctacctgatatgacagcacagtttataccaaacaggaaatcatgttgtttacataaacctgcagtaacatgtgggaatgacattcattcactaataacatttggagtgcagaagatatctcctacgtacaatatcatgtcacagtcttcagcatgtatttgtTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTCGAGTTCTCATTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGTTCTCATGCTGCTGATAACAACCATTTTTGTTT-AATTTATA---AGGTAACCCATATCGGAATGAAGTGGAGA-TTTGGGTTATA-AATA-TTTTAAATGCCCAGTTTTGA-GTCCAAAC-AGGTCAT--GTAATAGACAA--CATAC----ACATT--TGTGG-TC-------------TTGTAATAATA-ATGCAGTAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACATTACATCCCTGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCCC-AGCAGCGCATCTACTTACCAGATGTG----ACAGCACA----GTTTAT-ATCAAACAGG-AA-CT-TG------TT-TTTTTTACACAAATCTGGAGTAAC-A--TGGGAAATGACATCCATTCACAAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCTGATACCCCGGTATCTCCT-ATGTA-----CG--AT-----CTTATGTTACAGTCCTCAGCT-TGTATG-AACAGAAAGCGCTGACAATTTTCTCCCTGGACCAG-TTTTG
gi|5 : tttcttgcGAATTAA-TGGA----------AAGA-AA----TCCAAATCGGCTGCTTTGACGTGCAGATTAGATCATTTGTAATAGGGAAAGTATACCATTATATTGCTTTGGGTC-------------TT---ATATTACTTGTGGCAAGAACAAA-TTGTCGCATTTTATT-AC-TGCTGGGTGGCCATG-CAGTT------CAACGCTAC--CCCGGCACATTTCCAT-GCGAC----AGAGGCATGGTGTGAA-----CCCCTAAGAGGCACAGCCACTTACCGGTTGTG----ACAGCTC-----GTTTATTACCAAACAGG-AA---AGC------TT-TGCTGT---TGAACT----GT-------TGGGATGTTTCATCCTGCCATT-ATAACATCTCCT-GA-A--GTGCAGGATAGTGTGGGAAGC-GATACAT--GTATCT-CT-ATGTA-----CGAAATCCATGCCCATGCCATTGTCCTCAGCT-TGAATG-AAAAGAAAGCGATGACATTTTCCTCCCTGGACCGG-TTTCGGTAACTCCTGACCTTGACAACAGACAAACTTGCTTCATAA
gi|6 : ccaaTGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTTACACAAACCTGGAGTAAC-ATGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATGATGT-GGAAGCAGATGCACCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGATAGGTTCCTCTCTGGACCAATTTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTC-GA------------------GACACAAGTAC------CAGGCCAGCATCTGGTGGCAAAGTCACATC-----ACCAG------GCTACTAATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATttttgtttgcaatcaactgattatgtt
gi|7 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTCACACAA-CCTGGAGTAAC-ATGTGG-AAATGACATCCATTCACTAATAACAT---TT-GG-ATGGTACAGAATGATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCTCTGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTCAGA------------------A-CA-AGGTAC------CAGGCCAGCATCTGGTTGCAAAGTCACATC-----ACCAG------GCTACTAATTGCGTCTCTCA---GTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATca
gi|8 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TT-GCTTTTACACAAACCTGGAGTAAC-ATGT-GGAAATGACATCCATTCACTAATAACAT---TTGGG-A--GTGCAGAATGATGT-GGAAGCAGATGCCCCGGTATTTCCTCATG-A-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTGTGGAA--TCCTGA-CTTGACAACAGACAAACCCG-TTCACAAA--------ACCAA-CAGA-AGACTGTTTTTCAATCAG--CATGTCCTCAGA------------------A-CA-AGGTAC------CAGGCCAGCATCTGGTGGCAAAGTCACATC-----ACCAG------GCTACTAATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAAT-------CAGTGGAAGTCA-ACCACATcac
gi|9 : T---TGTAA-TCTT-GAATGCAAACCACAGAAA--------AC-GTGCTCGTAGCTCTGATGATGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGAATTTGGGTAATA-AA-AATTCCAAATCCTCAGCTTTGA-GTCCAAAC-AGGTCGT--GTGATAGGCAA--CATAC----ACAGT--TTTGG-TC-------------TT---ATTCTA-TTACGGCAAGGACAAAATCGTTG-GTTTTGTTTTCATTCTGGATAACTGTAACAGTCATTAGGCAAGGTTGTATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCTC--AGCAGCACATCCATTTACCAGATGTGACGTACAGCGCA----GTTTca
Alignments
lowQualScore : 111 22222222 111 1111 333333333333333333 1111 11111 11 444444444444444 111 11111 11111 22222222 1 111111 11111 55555555555555 111111 222222222222 1111111 1
lowQualScore : 11 77 4 3 3 1 000 5 5 00000000 5 1 1 0 5 5 777 1 0 4 8 222 00 2 0 5 5 66 0 77 2222 77 1 5 222222222222222222 5 5 1 1 0 4 1 5 0000 5 22222 66 7777 7777 4 4 888888888888888 000 777 4 4 55 4 0 2 4 3 00000 55 00000 4 5 5555 5 1 44444444 3 6 6 6 6 5 5 444444 22222 66 888 44444444444444 1 666666 0 1 999999999999 1 1 77 11 1111111 1 0
lowQualScore : .. .. . . . . ... . . ........ . . . . . . ... . . . . ... .. . . . . .. . .. .... .. . . .................. . . . . . . . . .... . ..... .. .... .... . . ............... ... ... . . .. . . . . . ..... .. ..... . . .... . . ........ . . . . . . . ...... ..... .. ... .............. . ...... . . ............ . . .. .. ....... . .
lowQualScore : 88 11 4 5 7 8 000 7 7 77777777 7 7 4 1 0 0 888 1 1 4 9 444 22 0 2 0 0 99 4 99 1111 99 3 7 444444444444444444 7 7 4 4 7 3 7 0 6666 0 55555 99 7777 7777 0 0 222222222222222 222 000 0 0 55 0 9 3 0 0 00000 55 00000 4 0 9999 7 7 22222222 3 7 7 7 7 0 0 444444 55555 99 888 77777777777777 0 444444 6 0 333333333333 0 0 99 55 3333333 4 7
consensus : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATC----G-C------AGCCNG------GCTACTA------------ATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
Reference ( family-1271 ) : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATC----G-C------AGCCNG------GCTACNA------------ATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
gi|1 : TGCTGACCAGAAATAT--AAAAAA-GTAGCCAATTACTAAATG-TTGTAGCCGTCGAGTTCTCTTTAGGATTAT---TGTAT-TCTT-TGATGCAAACCACAGTAA--------AC-GGGATCGTAGTTCTCATGCTGCTGATAACAACCATTTT-GTTT-CATTTATA---AGGTAGCCCATATCGGAATTAAGTGGAGA-TTTGGGTAATAGAA-A-TTCTAAATCTGCAGATTTGA-GTCCAAAT-AGGTCGC--GTATTAGACAA--CATAC----ACATT--TGTGG-TCAGTTGTGGTCTTATC---ATACTA-TTGCGACAAGGACAAAATCGCTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACGTCACATCCCATTACATT-CCATTGCAAC----AGAG-CAGGGTGCGAA-----CCCCC-AGCAGCACATCCACTTACTAGACAAG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-CTTG--------C-TTTTTTGCACAAACCCGGAGTAAC-ACGTGGGAAATTACATCCATTCACTAATAACAT---TT-GA-A--GTACAGACTAATGT-GGACGCAGATGCCCTGGTATATACT-ATGTA-----CG--AT-----CTCATGTCACAGTCCTCAGCT-TGTATG-AACAGAAAACGCTGACAATTTCTTCTCTGAAGCAA-TTTTGAAATCCCCTGACCTTGACAACAGACAAACCTGCTTCTCAAC--------ACCAACAGA-AGA-TG-TTTTCAA-----------TCAGAA-CA-AGGTAT------CAGACCAGCATCTGGTGGAAAAACAAGGTATCAGACCATCATCTG-CTGGAAAAGTCAA------ATCACGAGTCTGGCTACAAATGGTATTTGTCA--GGTCAGTTAAATACAACGAATC
gi|10 : gcATTCATA---AGGTAACCCAGATCGGAATTAAG-GGAGA-TTTGTTTAATA-A-----------------GCTTCGA-GTCCAATT-AGGTCGT--GAAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAACTATAACAGTCATTAGGCAAGGTTGCATCCCGGTACATT-CCATTGCGAC----AG----------------------------AGCACATCCACTTATCAGATGTA----ACAGCACA----GTTTAT-ATCAAACAGG-AACTTGGG------TT-TTTTTTACACAAACCTGGAGTAAC-AAATGGGAAATGACATCCATTCACTAATAACA
gi|11 : CATT-CAATTGTGGC----TGAA-CATGGTATGTC-----TCCC--AGCAACACACGCGCTTACGGGATGAG----ACAGCACAAGCAGTTTAT-AG-AAATAGG-AAATTA--------CT-TTGCTTACACAAAACTACAG--ACTCCGTGGGAAA-GACATACACGCACTGACAACAT---TT-GGAA--ATGCATAATAACGT-GGAAGCAGATGTCTC----TTTCTT-TTGCACACTTCA--AT-----ATTATGT
gi|12 : cccTGTTGACCAGAAATATCTTAAAAG-GTATTCCATTACTAAATG-TTGAAGTCGTTGAGT----------AT-AT---TGCAT-TCTT-GGATGTAAACCGCTGTAA--------A---GGCTTGTAGTTCTCATGCTGCTGATAACAGCCATTTT-GTTT-AATTGGTA---AGCTAACCCAGATCGGAATTAAGGGGATA-TTTGGGTGGTA-AA-A-TTCCAAATCCGCAGgg
gi|13 : gtttcatacCGAGTTCTCACTGGGATTACGACTGCATATTTT-GTTTGTTAATCACAGTAACAGCACTAACAGGGCT---ATCTCCCATACCACTGGGAGCCGCCATTTT-GTTTAAATTTAGAATTAGCTATCCCAGATAGGAAT
gi|14 : AAAGAACCTCCATTCACTGGCAACAC---TT-GG-G--ATGCAGACTAACGT-AGAAGCAGTT----CTATGTCTATT--TGCA-----CG--TT-----CTTATGTCG-A-----CAGCT-TGTGTGAAAAAGAAAGCAATGACGTATTCTTTTCTTGACaa
gi|15 : TTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------TAGACCAACATC-------------AAA--TAA---CA---------------AGCCTG------GCAACAA------------ATAGTATTTGTCA--GGTCAGTTTAATACAAAGAATCAAGCTCCAATGGACGTCC-ACGACAT
gi|16 : TGATAACAACCATTTT-GTTT-AATTCATA---AGCTAACCCAGATCGAAATTAAGTGGAGA-TTTAGGTAGTATGA-A-TTCCAAATCCAC-----CGA-GTCCAAAC-AGGTCGT--GTAATAcat
gi|17 : TGTTGACCAGAGATATCCGAAAAAAGTATCCCATTGCTAAATG-ATGTAGTCG
gi|18 : ttctttgcTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTC
gi|19 : tcttgcTGTTGACCAGAGATATCCGAAAA--GTATCCCATTGCTAAATGAATGTAGTCG
gi|2 : ttctttgcTGTTGACCAGAAATATCCAAAACG-GTATCCCATTACTAAATG-TTGTAGTCGTCGACTTCTCGTTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGAAA--------AC-GAGCTCGTAGCTCTGATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAA-CCAAATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-ATTTCCAAATCCGCAGCTTTGA-GTCCAAGC-AGGTCGT--GTAATAGGCAA--CATAC----ACATG--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAAGACAAAATCGTTG-GTTGTGTTTACATTCTGGATAACTATAACATTCATTAGGCAAGGTTGAATCCCGGCACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTATCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAAG-AACTTGGGTTTTTTTT-TTTTTTACACAAACCTAGAGTAAC-GAGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GT---GAATAATGT-GGAAGCAGATACCCCGGTATCTCCA-ATGTA-----CG--AT-----CTCATGTCACAGTTCTCAGCT-TTTATG-AACAAAAAGCGCTGACTATTTCCTCCCTGGATTAG-TTTTGGAATCTCCTAACCTTGACAACAGACAAACCTGCTTCACAAA--------ACC-A-ACA-A-A-TG-TTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------TTGACTAACATCTGGTGG-----CAAAG--TCA---CGTC----A-TA-----AGCCTG------GCAACAA------------ATAGTATTTGGCA--GGTCAGTTTAATACAGAGAATCAAGCTCCAGTAGAAGTCC-ACGACAT
gi|20 : TGTTGACCAGAGATATCCGAAAAG-GTATCCCATTGCTAAATG-ATGTAGTCG
gi|21 : ttctttgcTCAGAG-CA-AGGTAC------CAAACCAGCATCTGTTGG-----CAAAG--TCA---TATC----G-C------
gi|22 : gTAATACAAAGAATCAAGCTCCAGTGGAAGTCA-ACGTCATcagtct
gi|3 : TGTTGACCAGAAAGATCCAAAAAG-GTATTCCATTACTAAATG-TTGTTGTCGTCAAGTACTTGCTTTGATTAT---TGCAT-TCTTTGGATGACAATCTCAGTAA--------AC-GGGCTTG---CTCCCATGCTGCTGTTGAC-------------T-AATTTATA---AGCTAACCCAGATCAAAATTAAGTGGAAT-TTTGGGTAGCA-AA-A-TTCCAAATCGGCAGTTCTCA-GCTTCGAT-AGGTCGT--GTA--------------C----ACATT------------------------------AGTA-TTGCGGCAAGGACAAAATCGCTG-GT--------------GGATGGCCATAACAGTCAATA-------TTACTCCCCGGTACATT-CCATTGCGATCGATAGAC-CATGGTGTGAATTTAACCCC--AGCAGCACACCCACCTACCTGATATG----ACAGCACA----GTTTAT-ACCAAACAGGAAA-TCATG---------TTGTTTACATAAACCTGCAGTAAC-ATGTGGG-AATGACATTCATTCACTAATAACAT---TT-GG-A--GTGCAGAA----------------------GATATCTCCT-ACGTA-----CA--AT-----ATCATGTCACAGTCTTCAGCA-TGTAca
gi|3 : ttgcATCTCCTGACTTTGACAACACACAAATGTGCTTTACAAACTTTTGTAATC-A---ATAGA-TG-TTTTCAATCAGCATGTCCTAAGAG-TA-AGGTACTGGTATCAAACAAGCATCTGGTTG-----CAAAG--TCA---CATC----GCC------AGTCTGAATTTAGATACTC------------ATGTCGGCAACGAAGGGTAAAAT---TACAAAGATTCAAGCTCCAGTGTAAGTCC-ACGGCATtttgtatctcctgactttgacaacacacaaatgtgctttacaaacttttgtaatcaatagatgttttcaatcagcatgtcctaagagtaaggtactggtatcaaacaagcatctggttgcaaagtcacatcgccagtctgaatttagatactcatgtcggcaacgaagggtaaaattacaaagattcaagctccagtgtaagtccacggcat
gi|4 : ttgctgttgaccagaaagatccaaaaaggtattccattactaaatgttgttgtcgtcaagtacttgctttgattattgcattctttggatgacaatctcagtaaacgggcttgctcccatgctgctgttgactaatttataagctaacccagatcaaaattaagtggaattttgggtagcaaaattccaaatcggcagttctcagcttcgataggtcgtgtacacattagtattgcggcaaggacaaaatcgctggtggatggccataacagtcaatattactccccggtacattccattgcgatcgatagaccatggtgtgaatttaaccccagcagcacacccacctacctgatatgacagcacagtttataccaaacaggaaatcatgttgtttacataaacctgcagtaacatgtgggaatgacattcattcactaataacatttggagtgcagaagatatctcctacgtacaatatcatgtcacagtcttcagcatgtatttgtTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTCGAGTTCTCATTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGTTCTCATGCTGCTGATAACAACCATTTTTGTTT-AATTTATA---AGGTAACCCATATCGGAATGAAGTGGAGA-TTTGGGTTATA-AATA-TTTTAAATGCCCAGTTTTGA-GTCCAAAC-AGGTCAT--GTAATAGACAA--CATAC----ACATT--TGTGG-TC-------------TTGTAATAATA-ATGCAGTAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACATTACATCCCTGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCCC-AGCAGCGCATCTACTTACCAGATGTG----ACAGCACA----GTTTAT-ATCAAACAGG-AA-CT-TG------TT-TTTTTTACACAAATCTGGAGTAAC-A--TGGGAAATGACATCCATTCACAAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCTGATACCCCGGTATCTCCT-ATGTA-----CG--AT-----CTTATGTTACAGTCCTCAGCT-TGTATG-AACAGAAAGCGCTGACAATTTTCTCCCTGGACCAG-TTTTG
gi|5 : tttcttgcGAATTAA-TGGA----------AAGA-AA----TCCAAATCGGCTGCTTTGACGTGCAGATTAGATCATTTGTAATAGGGAAAGTATACCATTATATTGCTTTGGGTC-------------TT---ATATTACTTGTGGCAAGAACAAA-TTGTCGCATTTTATT-AC-TGCTGGGTGGCCATG-CAGTT------CAACGCTAC--CCCGGCACATTTCCAT-GCGAC----AGAGGCATGGTGTGAA-----CCCCTAAGAGGCACAGCCACTTACCGGTTGTG----ACAGCTC-----GTTTATTACCAAACAGG-AA---AGC------TT-TGCTGT---TGAACT----GT-------TGGGATGTTTCATCCTGCCATT-ATAACATCTCCT-GA-A--GTGCAGGATAGTGTGGGAAGC-GATACAT--GTATCT-CT-ATGTA-----CGAAATCCATGCCCATGCCATTGTCCTCAGCT-TGAATG-AAAAGAAAGCGATGACATTTTCCTCCCTGGACCGG-TTTCGGTAACTCCTGACCTTGACAACAGACAAACTTGCTTCATAA
gi|6 : ccaaTGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTTACACAAACCTGGAGTAAC-ATGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATGATGT-GGAAGCAGATGCACCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGATAGGTTCCTCTCTGGACCAATTTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTC-GAGACACAAGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATttttgtttgcaatcaactgattatgtt
gi|7 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTCACACAA-CCTGGAGTAAC-ATGTGG-AAATGACATCCATTCACTAATAACAT---TT-GG-ATGGTACAGAATGATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCTCTGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------CAGGCCAGCATCTGGTTG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA---GTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATca
gi|8 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TT-GCTTTTACACAAACCTGGAGTAAC-ATGT-GGAAATGACATCCATTCACTAATAACAT---TTGGG-A--GTGCAGAATGATGT-GGAAGCAGATGCCCCGGTATTTCCTCATG-A-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTGTGGAA--TCCTGA-CTTGACAACAGACAAACCCG-TTCACAAA--------ACCAACAGA-AGACTGTTTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAAT-------CAGTGGAAGTCA-ACCACATcac
gi|9 : T---TGTAA-TCTT-GAATGCAAACCACAGAAA--------AC-GTGCTCGTAGCTCTGATGATGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGAATTTGGGTAATA-AA-AATTCCAAATCCTCAGCTTTGA-GTCCAAAC-AGGTCGT--GTGATAGGCAA--CATAC----ACAGT--TTTGG-TC-------------TT---ATTCTA-TTACGGCAAGGACAAAATCGTTG-GTTTTGTTTTCATTCTGGATAACTGTAACAGTCATTAGGCAAGGTTGTATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCTC--AGCAGCACATCCATTTACCAGATGTGACGTACAGCGCA----GTTTca
Alignments
lowQualScore : 111 22222222 111 1111 333333333333333333 1111 11111 11 444444444444444 111 11111 11111 22222222 11 33333333333333333333 111111 33333 111111 1111111 1
lowQualScore : 11 77 4 3 3 1 000 5 5 00000000 5 1 1 0 5 5 777 1 0 4 8 222 00 2 0 5 5 66 0 77 2222 77 1 5 222222222222222222 5 5 1 1 0 4 1 5 0000 5 22222 66 7777 7777 4 4 888888888888888 000 777 4 4 55 4 0 2 4 3 00000 55 00000 4 5 5555 5 1 44444444 6 33 6 6 6 77 99999999999999999999 5 444444 66666 1 666666 2 1 1 77 11 1111111 1 0
lowQualScore : .. .. . . . . ... . . ........ . . . . . . ... . . . . ... .. . . . . .. . .. .... .. . . .................. . . . . . . . . .... . ..... .. .... .... . . ............... ... ... . . .. . . . . . ..... .. ..... . . .... . . ........ . .. . . . .. .................... . ...... ..... . ...... . . . .. .. ....... . .
lowQualScore : 88 11 4 5 7 8 000 7 7 77777777 7 7 4 1 0 0 888 1 1 4 9 444 22 0 2 0 0 99 4 99 1111 99 3 7 444444444444444444 7 7 4 4 7 3 7 0 6666 0 55555 99 7777 7777 0 0 222222222222222 222 000 0 0 55 0 9 3 0 0 00000 55 00000 4 0 9999 7 7 22222222 7 33 7 7 7 99 99999999999999999999 0 444444 77777 0 444444 1 0 0 99 55 3333333 4 7
consensus : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTCAGA------------------G-CA-AGGTAC------CAGACCAGCATCTGGTGGCAAAGTCACATCG-C-AGCCNG------GCTACNAATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
Reference ( family-1271 ) : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTCAGA------------------G-CA-AGGTAC------CAGACCAGCATCTGGTGGCAAAGTCACATCG-C-AGCCNG------GCTACTAATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
gi|1 : TGCTGACCAGAAATAT--AAAAAA-GTAGCCAATTACTAAATG-TTGTAGCCGTCGAGTTCTCTTTAGGATTAT---TGTAT-TCTT-TGATGCAAACCACAGTAA--------AC-GGGATCGTAGTTCTCATGCTGCTGATAACAACCATTTT-GTTT-CATTTATA---AGGTAGCCCATATCGGAATTAAGTGGAGA-TTTGGGTAATAGAA-A-TTCTAAATCTGCAGATTTGA-GTCCAAAT-AGGTCGC--GTATTAGACAA--CATAC----ACATT--TGTGG-TCAGTTGTGGTCTTATC---ATACTA-TTGCGACAAGGACAAAATCGCTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACGTCACATCCCATTACATT-CCATTGCAAC----AGAG-CAGGGTGCGAA-----CCCCC-AGCAGCACATCCACTTACTAGACAAG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-CTTG--------C-TTTTTTGCACAAACCCGGAGTAAC-ACGTGGGAAATTACATCCATTCACTAATAACAT---TT-GA-A--GTACAGACTAATGT-GGACGCAGATGCCCTGGTATATACT-ATGTA-----CG--AT-----CTCATGTCACAGTCCTCAGCT-TGTATG-AACAGAAAACGCTGACAATTTCTTCTCTGAAGCAA-TTTTGAAATCCCCTGACCTTGACAACAGACAAACCTGCTTCTCAAC--------ACC-AACAGA-AGA-TG-TTTTCAATCAGAACAAGGTATCAGACCAGCATCTGGTGGAAAAA-CA-AGGTAT------CAGACCATCATCTGCTGGAAAAGTCAAATCA-CGAGTCTG------GCTACAAATGGTATTTGTCA--GGTCAGTTAAATACAACGAATC
gi|10 : gcATTCATA---AGGTAACCCAGATCGGAATTAAG-GGAGA-TTTGTTTAATA-A-----------------GCTTCGA-GTCCAATT-AGGTCGT--GAAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAACTATAACAGTCATTAGGCAAGGTTGCATCCCGGTACATT-CCATTGCGAC----AG----------------------------AGCACATCCACTTATCAGATGTA----ACAGCACA----GTTTAT-ATCAAACAGG-AACTTGGG------TT-TTTTTTACACAAACCTGGAGTAAC-AAATGGGAAATGACATCCATTCACTAATAACA
gi|11 : CATT-CAATTGTGGC----TGAA-CATGGTATGTC-----TCCC--AGCAACACACGCGCTTACGGGATGAG----ACAGCACAAGCAGTTTAT-AG-AAATAGG-AAATTA--------CT-TTGCTTACACAAAACTACAG--ACTCCGTGGGAAA-GACATACACGCACTGACAACAT---TT-GGAA--ATGCATAATAACGT-GGAAGCAGATGTCTC----TTTCTT-TTGCACACTTCA--AT-----ATTATGT
gi|12 : cccTGTTGACCAGAAATATCTTAAAAG-GTATTCCATTACTAAATG-TTGAAGTCGTTGAGT----------AT-AT---TGCAT-TCTT-GGATGTAAACCGCTGTAA--------A---GGCTTGTAGTTCTCATGCTGCTGATAACAGCCATTTT-GTTT-AATTGGTA---AGCTAACCCAGATCGGAATTAAGGGGATA-TTTGGGTGGTA-AA-A-TTCCAAATCCGCAGgg
gi|13 : gtttcatacCGAGTTCTCACTGGGATTACGACTGCATATTTT-GTTTGTTAATCACAGTAACAGCACTAACAGGGCT---ATCTCCCATACCACTGGGAGCCGCCATTTT-GTTTAAATTTAGAATTAGCTATCCCAGATAGGAAT
gi|14 : AAAGAACCTCCATTCACTGGCAACAC---TT-GG-G--ATGCAGACTAACGT-AGAAGCAGTT----CTATGTCTATT--TGCA-----CG--TT-----CTTATGTCG-A-----CAGCT-TGTGTGAAAAAGAAAGCAATGACGTATTCTTTTCTTGACaa
gi|15 : TTTCAATCAG--CATGTCCTCAGA------------------G-CA-AGGTAC------TAGACCAACATC--------AAATAACA------AGCCTG------GCAACAAATAGTATTTGTCA--GGTCAGTTTAATACAAAGAATCAAGCTCCAATGGACGTCC-ACGACAT
gi|16 : TGATAACAACCATTTT-GTTT-AATTCATA---AGCTAACCCAGATCGAAATTAAGTGGAGA-TTTAGGTAGTATGA-A-TTCCAAATCCAC-----CGA-GTCCAAAC-AGGTCGT--GTAATAcat
gi|17 : TGTTGACCAGAGATATCCGAAAAAAGTATCCCATTGCTAAATG-ATGTAGTCG
gi|18 : ttctttgcTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTC
gi|19 : tcttgcTGTTGACCAGAGATATCCGAAAA--GTATCCCATTGCTAAATGAATGTAGTCG
gi|2 : ttctttgcTGTTGACCAGAAATATCCAAAACG-GTATCCCATTACTAAATG-TTGTAGTCGTCGACTTCTCGTTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGAAA--------AC-GAGCTCGTAGCTCTGATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAA-CCAAATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-ATTTCCAAATCCGCAGCTTTGA-GTCCAAGC-AGGTCGT--GTAATAGGCAA--CATAC----ACATG--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAAGACAAAATCGTTG-GTTGTGTTTACATTCTGGATAACTATAACATTCATTAGGCAAGGTTGAATCCCGGCACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTATCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAAG-AACTTGGGTTTTTTTT-TTTTTTACACAAACCTAGAGTAAC-GAGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GT---GAATAATGT-GGAAGCAGATACCCCGGTATCTCCA-ATGTA-----CG--AT-----CTCATGTCACAGTTCTCAGCT-TTTATG-AACAAAAAGCGCTGACTATTTCCTCCCTGGATTAG-TTTTGGAATCTCCTAACCTTGACAACAGACAAACCTGCTTCACAAA--------ACC-A--ACA-A-A-TG-TTTTCAATCAG--CATGTCCTCAGA------------------A-CA-AGGTAC------TTGACTAACATCTGGTGGCAAAGTCACGTCA-TAAGCCTG------GCAACAAATAGTATTTGGCA--GGTCAGTTTAATACAGAGAATCAAGCTCCAGTAGAAGTCC-ACGACAT
gi|20 : TGTTGACCAGAGATATCCGAAAAG-GTATCCCATTGCTAAATG-ATGTAGTCG
gi|21 : ttctttgcTCAGA------------------G-CA-AGGTAC------CAAACCAGCATCTGTTGGCAAAGTCATATCG-C-
gi|22 : gTAATACAAAGAATCAAGCTCCAGTGGAAGTCA-ACGTCATcagtct
gi|3 : TGTTGACCAGAAAGATCCAAAAAG-GTATTCCATTACTAAATG-TTGTTGTCGTCAAGTACTTGCTTTGATTAT---TGCAT-TCTTTGGATGACAATCTCAGTAA--------AC-GGGCTTG---CTCCCATGCTGCTGTTGAC-------------T-AATTTATA---AGCTAACCCAGATCAAAATTAAGTGGAAT-TTTGGGTAGCA-AA-A-TTCCAAATCGGCAGTTCTCA-GCTTCGAT-AGGTCGT--GTA--------------C----ACATT------------------------------AGTA-TTGCGGCAAGGACAAAATCGCTG-GT--------------GGATGGCCATAACAGTCAATA-------TTACTCCCCGGTACATT-CCATTGCGATCGATAGAC-CATGGTGTGAATTTAACCCC--AGCAGCACACCCACCTACCTGATATG----ACAGCACA----GTTTAT-ACCAAACAGGAAA-TCATG---------TTGTTTACATAAACCTGCAGTAAC-ATGTGGG-AATGACATTCATTCACTAATAACAT---TT-GG-A--GTGCAGAA----------------------GATATCTCCT-ACGTA-----CA--AT-----ATCATGTCACAGTCTTCAGCA-TGTAca
gi|3 : ttgcATCTCCTGACTTTGACAACACACAAATGTGCTTTACAAACTTTTGTAATC-A----ATAGA-TG-TTTTCAATCAG--CATGTCCTAAGA------------------G-TA-AGGTACTGGTATCAAACAAGCATCTGGTTGCAAAGTCACATCGCC-AGTCTGAATTTAGATACTCATGTCGGCAACGAAGGGTAAAAT---TACAAAGATTCAAGCTCCAGTGTAAGTCC-ACGGCATtttgtatctcctgactttgacaacacacaaatgtgctttacaaacttttgtaatcaatagatgttttcaatcagcatgtcctaagagtaaggtactggtatcaaacaagcatctggttgcaaagtcacatcgccagtctgaatttagatactcatgtcggcaacgaagggtaaaattacaaagattcaagctccagtgtaagtccacggcat
gi|4 : ttgctgttgaccagaaagatccaaaaaggtattccattactaaatgttgttgtcgtcaagtacttgctttgattattgcattctttggatgacaatctcagtaaacgggcttgctcccatgctgctgttgactaatttataagctaacccagatcaaaattaagtggaattttgggtagcaaaattccaaatcggcagttctcagcttcgataggtcgtgtacacattagtattgcggcaaggacaaaatcgctggtggatggccataacagtcaatattactccccggtacattccattgcgatcgatagaccatggtgtgaatttaaccccagcagcacacccacctacctgatatgacagcacagtttataccaaacaggaaatcatgttgtttacataaacctgcagtaacatgtgggaatgacattcattcactaataacatttggagtgcagaagatatctcctacgtacaatatcatgtcacagtcttcagcatgtatttgtTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTCGAGTTCTCATTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGTTCTCATGCTGCTGATAACAACCATTTTTGTTT-AATTTATA---AGGTAACCCATATCGGAATGAAGTGGAGA-TTTGGGTTATA-AATA-TTTTAAATGCCCAGTTTTGA-GTCCAAAC-AGGTCAT--GTAATAGACAA--CATAC----ACATT--TGTGG-TC-------------TTGTAATAATA-ATGCAGTAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACATTACATCCCTGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCCC-AGCAGCGCATCTACTTACCAGATGTG----ACAGCACA----GTTTAT-ATCAAACAGG-AA-CT-TG------TT-TTTTTTACACAAATCTGGAGTAAC-A--TGGGAAATGACATCCATTCACAAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCTGATACCCCGGTATCTCCT-ATGTA-----CG--AT-----CTTATGTTACAGTCCTCAGCT-TGTATG-AACAGAAAGCGCTGACAATTTTCTCCCTGGACCAG-TTTTG
gi|5 : tttcttgcGAATTAA-TGGA----------AAGA-AA----TCCAAATCGGCTGCTTTGACGTGCAGATTAGATCATTTGTAATAGGGAAAGTATACCATTATATTGCTTTGGGTC-------------TT---ATATTACTTGTGGCAAGAACAAA-TTGTCGCATTTTATT-AC-TGCTGGGTGGCCATG-CAGTT------CAACGCTAC--CCCGGCACATTTCCAT-GCGAC----AGAGGCATGGTGTGAA-----CCCCTAAGAGGCACAGCCACTTACCGGTTGTG----ACAGCTC-----GTTTATTACCAAACAGG-AA---AGC------TT-TGCTGT---TGAACT----GT-------TGGGATGTTTCATCCTGCCATT-ATAACATCTCCT-GA-A--GTGCAGGATAGTGTGGGAAGC-GATACAT--GTATCT-CT-ATGTA-----CGAAATCCATGCCCATGCCATTGTCCTCAGCT-TGAATG-AAAAGAAAGCGATGACATTTTCCTCCCTGGACCGG-TTTCGGTAACTCCTGACCTTGACAACAGACAAACTTGCTTCATAA
gi|6 : ccaaTGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTTACACAAACCTGGAGTAAC-ATGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATGATGT-GGAAGCAGATGCACCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGATAGGTTCCTCTCTGGACCAATTTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTC-GA------------------GACACAAGTAC------CAGGCCAGCATCTGGTGGCAAAGTCACATC-----ACCAG------GCTACTAATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATttttgtttgcaatcaactgattatgtt
gi|7 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTCACACAA-CCTGGAGTAAC-ATGTGG-AAATGACATCCATTCACTAATAACAT---TT-GG-ATGGTACAGAATGATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCTCTGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTCAGA------------------A-CA-AGGTAC------CAGGCCAGCATCTGGTTGCAAAGTCACATC-----ACCAG------GCTACTAATTGCGTCTCTCA---GTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATca
gi|8 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TT-GCTTTTACACAAACCTGGAGTAAC-ATGT-GGAAATGACATCCATTCACTAATAACAT---TTGGG-A--GTGCAGAATGATGT-GGAAGCAGATGCCCCGGTATTTCCTCATG-A-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTGTGGAA--TCCTGA-CTTGACAACAGACAAACCCG-TTCACAAA--------ACCAA-CAGA-AGACTGTTTTTCAATCAG--CATGTCCTCAGA------------------A-CA-AGGTAC------CAGGCCAGCATCTGGTGGCAAAGTCACATC-----ACCAG------GCTACTAATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAAT-------CAGTGGAAGTCA-ACCACATcac
gi|9 : T---TGTAA-TCTT-GAATGCAAACCACAGAAA--------AC-GTGCTCGTAGCTCTGATGATGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGAATTTGGGTAATA-AA-AATTCCAAATCCTCAGCTTTGA-GTCCAAAC-AGGTCGT--GTGATAGGCAA--CATAC----ACAGT--TTTGG-TC-------------TT---ATTCTA-TTACGGCAAGGACAAAATCGTTG-GTTTTGTTTTCATTCTGGATAACTGTAACAGTCATTAGGCAAGGTTGTATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCTC--AGCAGCACATCCATTTACCAGATGTGACGTACAGCGCA----GTTTca
Alignments
lowQualScore : 111 22222222 111 1111 333333333333333333 1111 11111 11 444444444444444 111 11111 11111 22222222 1 111111 11111 55555555555555 111111 222222222222 1111111 1
lowQualScore : 11 77 4 3 3 1 000 5 5 00000000 5 1 1 0 5 5 777 1 0 4 8 222 00 2 0 5 5 66 0 77 2222 77 1 5 222222222222222222 5 5 1 1 0 4 1 5 0000 5 22222 66 7777 7777 4 4 888888888888888 000 777 4 4 55 4 0 2 4 3 00000 55 00000 4 5 5555 5 1 44444444 3 6 6 6 6 5 5 444444 22222 66 888 44444444444444 1 666666 0 1 999999999999 1 1 77 11 1111111 1 0
lowQualScore : .. .. . . . . ... . . ........ . . . . . . ... . . . . ... .. . . . . .. . .. .... .. . . .................. . . . . . . . . .... . ..... .. .... .... . . ............... ... ... . . .. . . . . . ..... .. ..... . . .... . . ........ . . . . . . . ...... ..... .. ... .............. . ...... . . ............ . . .. .. ....... . .
lowQualScore : 88 11 4 5 7 8 000 7 7 77777777 7 7 4 1 0 0 888 1 1 4 9 444 22 0 2 0 0 99 4 99 1111 99 3 7 444444444444444444 7 7 4 4 7 3 7 0 6666 0 55555 99 7777 7777 0 0 222222222222222 222 000 0 0 55 0 9 3 0 0 00000 55 00000 4 0 9999 7 7 22222222 3 7 7 7 7 0 0 444444 55555 99 888 77777777777777 0 444444 6 0 333333333333 0 0 99 55 3333333 4 7
consensus : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATC----G-C------AGCCNG------GCTACTA------------ATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
Reference ( family-1271 ) : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATC----G-C------AGCCNG------GCTACNA------------ATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
gi|1 : TGCTGACCAGAAATAT--AAAAAA-GTAGCCAATTACTAAATG-TTGTAGCCGTCGAGTTCTCTTTAGGATTAT---TGTAT-TCTT-TGATGCAAACCACAGTAA--------AC-GGGATCGTAGTTCTCATGCTGCTGATAACAACCATTTT-GTTT-CATTTATA---AGGTAGCCCATATCGGAATTAAGTGGAGA-TTTGGGTAATAGAA-A-TTCTAAATCTGCAGATTTGA-GTCCAAAT-AGGTCGC--GTATTAGACAA--CATAC----ACATT--TGTGG-TCAGTTGTGGTCTTATC---ATACTA-TTGCGACAAGGACAAAATCGCTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACGTCACATCCCATTACATT-CCATTGCAAC----AGAG-CAGGGTGCGAA-----CCCCC-AGCAGCACATCCACTTACTAGACAAG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-CTTG--------C-TTTTTTGCACAAACCCGGAGTAAC-ACGTGGGAAATTACATCCATTCACTAATAACAT---TT-GA-A--GTACAGACTAATGT-GGACGCAGATGCCCTGGTATATACT-ATGTA-----CG--AT-----CTCATGTCACAGTCCTCAGCT-TGTATG-AACAGAAAACGCTGACAATTTCTTCTCTGAAGCAA-TTTTGAAATCCCCTGACCTTGACAACAGACAAACCTGCTTCTCAAC--------ACCAACAGA-AGA-TG-TTTTCAA-----------TCAGAA-CA-AGGTAT------CAGACCAGCATCTGGTGGAAAAACAAGGTATCAGACCATCATCTG-CTGGAAAAGTCAA------ATCACGAGTCTGGCTACAAATGGTATTTGTCA--GGTCAGTTAAATACAACGAATC
gi|10 : gcATTCATA---AGGTAACCCAGATCGGAATTAAG-GGAGA-TTTGTTTAATA-A-----------------GCTTCGA-GTCCAATT-AGGTCGT--GAAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAACTATAACAGTCATTAGGCAAGGTTGCATCCCGGTACATT-CCATTGCGAC----AG----------------------------AGCACATCCACTTATCAGATGTA----ACAGCACA----GTTTAT-ATCAAACAGG-AACTTGGG------TT-TTTTTTACACAAACCTGGAGTAAC-AAATGGGAAATGACATCCATTCACTAATAACA
gi|11 : CATT-CAATTGTGGC----TGAA-CATGGTATGTC-----TCCC--AGCAACACACGCGCTTACGGGATGAG----ACAGCACAAGCAGTTTAT-AG-AAATAGG-AAATTA--------CT-TTGCTTACACAAAACTACAG--ACTCCGTGGGAAA-GACATACACGCACTGACAACAT---TT-GGAA--ATGCATAATAACGT-GGAAGCAGATGTCTC----TTTCTT-TTGCACACTTCA--AT-----ATTATGT
gi|12 : cccTGTTGACCAGAAATATCTTAAAAG-GTATTCCATTACTAAATG-TTGAAGTCGTTGAGT----------AT-AT---TGCAT-TCTT-GGATGTAAACCGCTGTAA--------A---GGCTTGTAGTTCTCATGCTGCTGATAACAGCCATTTT-GTTT-AATTGGTA---AGCTAACCCAGATCGGAATTAAGGGGATA-TTTGGGTGGTA-AA-A-TTCCAAATCCGCAGgg
gi|13 : gtttcatacCGAGTTCTCACTGGGATTACGACTGCATATTTT-GTTTGTTAATCACAGTAACAGCACTAACAGGGCT---ATCTCCCATACCACTGGGAGCCGCCATTTT-GTTTAAATTTAGAATTAGCTATCCCAGATAGGAAT
gi|14 : AAAGAACCTCCATTCACTGGCAACAC---TT-GG-G--ATGCAGACTAACGT-AGAAGCAGTT----CTATGTCTATT--TGCA-----CG--TT-----CTTATGTCG-A-----CAGCT-TGTGTGAAAAAGAAAGCAATGACGTATTCTTTTCTTGACaa
gi|15 : TTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------TAGACCAACATC-------------AAA--TAA---CA---------------AGCCTG------GCAACAA------------ATAGTATTTGTCA--GGTCAGTTTAATACAAAGAATCAAGCTCCAATGGACGTCC-ACGACAT
gi|16 : TGATAACAACCATTTT-GTTT-AATTCATA---AGCTAACCCAGATCGAAATTAAGTGGAGA-TTTAGGTAGTATGA-A-TTCCAAATCCAC-----CGA-GTCCAAAC-AGGTCGT--GTAATAcat
gi|17 : TGTTGACCAGAGATATCCGAAAAAAGTATCCCATTGCTAAATG-ATGTAGTCG
gi|18 : ttctttgcTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTC
gi|19 : tcttgcTGTTGACCAGAGATATCCGAAAA--GTATCCCATTGCTAAATGAATGTAGTCG
gi|2 : ttctttgcTGTTGACCAGAAATATCCAAAACG-GTATCCCATTACTAAATG-TTGTAGTCGTCGACTTCTCGTTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGAAA--------AC-GAGCTCGTAGCTCTGATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAA-CCAAATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-ATTTCCAAATCCGCAGCTTTGA-GTCCAAGC-AGGTCGT--GTAATAGGCAA--CATAC----ACATG--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAAGACAAAATCGTTG-GTTGTGTTTACATTCTGGATAACTATAACATTCATTAGGCAAGGTTGAATCCCGGCACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTATCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAAG-AACTTGGGTTTTTTTT-TTTTTTACACAAACCTAGAGTAAC-GAGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GT---GAATAATGT-GGAAGCAGATACCCCGGTATCTCCA-ATGTA-----CG--AT-----CTCATGTCACAGTTCTCAGCT-TTTATG-AACAAAAAGCGCTGACTATTTCCTCCCTGGATTAG-TTTTGGAATCTCCTAACCTTGACAACAGACAAACCTGCTTCACAAA--------ACC-A-ACA-A-A-TG-TTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------TTGACTAACATCTGGTGG-----CAAAG--TCA---CGTC----A-TA-----AGCCTG------GCAACAA------------ATAGTATTTGGCA--GGTCAGTTTAATACAGAGAATCAAGCTCCAGTAGAAGTCC-ACGACAT
gi|20 : TGTTGACCAGAGATATCCGAAAAG-GTATCCCATTGCTAAATG-ATGTAGTCG
gi|21 : ttctttgcTCAGAG-CA-AGGTAC------CAAACCAGCATCTGTTGG-----CAAAG--TCA---TATC----G-C------
gi|22 : gTAATACAAAGAATCAAGCTCCAGTGGAAGTCA-ACGTCATcagtct
gi|3 : TGTTGACCAGAAAGATCCAAAAAG-GTATTCCATTACTAAATG-TTGTTGTCGTCAAGTACTTGCTTTGATTAT---TGCAT-TCTTTGGATGACAATCTCAGTAA--------AC-GGGCTTG---CTCCCATGCTGCTGTTGAC-------------T-AATTTATA---AGCTAACCCAGATCAAAATTAAGTGGAAT-TTTGGGTAGCA-AA-A-TTCCAAATCGGCAGTTCTCA-GCTTCGAT-AGGTCGT--GTA--------------C----ACATT------------------------------AGTA-TTGCGGCAAGGACAAAATCGCTG-GT--------------GGATGGCCATAACAGTCAATA-------TTACTCCCCGGTACATT-CCATTGCGATCGATAGAC-CATGGTGTGAATTTAACCCC--AGCAGCACACCCACCTACCTGATATG----ACAGCACA----GTTTAT-ACCAAACAGGAAA-TCATG---------TTGTTTACATAAACCTGCAGTAAC-ATGTGGG-AATGACATTCATTCACTAATAACAT---TT-GG-A--GTGCAGAA----------------------GATATCTCCT-ACGTA-----CA--AT-----ATCATGTCACAGTCTTCAGCA-TGTAca
gi|3 : ttgcATCTCCTGACTTTGACAACACACAAATGTGCTTTACAAACTTTTGTAATC-A---ATAGA-TG-TTTTCAATCAGCATGTCCTAAGAG-TA-AGGTACTGGTATCAAACAAGCATCTGGTTG-----CAAAG--TCA---CATC----GCC------AGTCTGAATTTAGATACTC------------ATGTCGGCAACGAAGGGTAAAAT---TACAAAGATTCAAGCTCCAGTGTAAGTCC-ACGGCATtttgtatctcctgactttgacaacacacaaatgtgctttacaaacttttgtaatcaatagatgttttcaatcagcatgtcctaagagtaaggtactggtatcaaacaagcatctggttgcaaagtcacatcgccagtctgaatttagatactcatgtcggcaacgaagggtaaaattacaaagattcaagctccagtgtaagtccacggcat
gi|4 : ttgctgttgaccagaaagatccaaaaaggtattccattactaaatgttgttgtcgtcaagtacttgctttgattattgcattctttggatgacaatctcagtaaacgggcttgctcccatgctgctgttgactaatttataagctaacccagatcaaaattaagtggaattttgggtagcaaaattccaaatcggcagttctcagcttcgataggtcgtgtacacattagtattgcggcaaggacaaaatcgctggtggatggccataacagtcaatattactccccggtacattccattgcgatcgatagaccatggtgtgaatttaaccccagcagcacacccacctacctgatatgacagcacagtttataccaaacaggaaatcatgttgtttacataaacctgcagtaacatgtgggaatgacattcattcactaataacatttggagtgcagaagatatctcctacgtacaatatcatgtcacagtcttcagcatgtatttgtTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTCGAGTTCTCATTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGTTCTCATGCTGCTGATAACAACCATTTTTGTTT-AATTTATA---AGGTAACCCATATCGGAATGAAGTGGAGA-TTTGGGTTATA-AATA-TTTTAAATGCCCAGTTTTGA-GTCCAAAC-AGGTCAT--GTAATAGACAA--CATAC----ACATT--TGTGG-TC-------------TTGTAATAATA-ATGCAGTAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACATTACATCCCTGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCCC-AGCAGCGCATCTACTTACCAGATGTG----ACAGCACA----GTTTAT-ATCAAACAGG-AA-CT-TG------TT-TTTTTTACACAAATCTGGAGTAAC-A--TGGGAAATGACATCCATTCACAAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCTGATACCCCGGTATCTCCT-ATGTA-----CG--AT-----CTTATGTTACAGTCCTCAGCT-TGTATG-AACAGAAAGCGCTGACAATTTTCTCCCTGGACCAG-TTTTG
gi|5 : tttcttgcGAATTAA-TGGA----------AAGA-AA----TCCAAATCGGCTGCTTTGACGTGCAGATTAGATCATTTGTAATAGGGAAAGTATACCATTATATTGCTTTGGGTC-------------TT---ATATTACTTGTGGCAAGAACAAA-TTGTCGCATTTTATT-AC-TGCTGGGTGGCCATG-CAGTT------CAACGCTAC--CCCGGCACATTTCCAT-GCGAC----AGAGGCATGGTGTGAA-----CCCCTAAGAGGCACAGCCACTTACCGGTTGTG----ACAGCTC-----GTTTATTACCAAACAGG-AA---AGC------TT-TGCTGT---TGAACT----GT-------TGGGATGTTTCATCCTGCCATT-ATAACATCTCCT-GA-A--GTGCAGGATAGTGTGGGAAGC-GATACAT--GTATCT-CT-ATGTA-----CGAAATCCATGCCCATGCCATTGTCCTCAGCT-TGAATG-AAAAGAAAGCGATGACATTTTCCTCCCTGGACCGG-TTTCGGTAACTCCTGACCTTGACAACAGACAAACTTGCTTCATAA
gi|6 : ccaaTGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTTACACAAACCTGGAGTAAC-ATGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATGATGT-GGAAGCAGATGCACCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGATAGGTTCCTCTCTGGACCAATTTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTC-GAGACACAAGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATttttgtttgcaatcaactgattatgtt
gi|7 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTCACACAA-CCTGGAGTAAC-ATGTGG-AAATGACATCCATTCACTAATAACAT---TT-GG-ATGGTACAGAATGATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCTCTGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------CAGGCCAGCATCTGGTTG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA---GTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATca
gi|8 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TT-GCTTTTACACAAACCTGGAGTAAC-ATGT-GGAAATGACATCCATTCACTAATAACAT---TTGGG-A--GTGCAGAATGATGT-GGAAGCAGATGCCCCGGTATTTCCTCATG-A-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTGTGGAA--TCCTGA-CTTGACAACAGACAAACCCG-TTCACAAA--------ACCAACAGA-AGACTGTTTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAAT-------CAGTGGAAGTCA-ACCACATcac
gi|9 : T---TGTAA-TCTT-GAATGCAAACCACAGAAA--------AC-GTGCTCGTAGCTCTGATGATGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGAATTTGGGTAATA-AA-AATTCCAAATCCTCAGCTTTGA-GTCCAAAC-AGGTCGT--GTGATAGGCAA--CATAC----ACAGT--TTTGG-TC-------------TT---ATTCTA-TTACGGCAAGGACAAAATCGTTG-GTTTTGTTTTCATTCTGGATAACTGTAACAGTCATTAGGCAAGGTTGTATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCTC--AGCAGCACATCCATTTACCAGATGTGACGTACAGCGCA----GTTTca
Alignments
lowQualScore : 111 22222222 111 1111 333333333333333333 1111 11111 11 444444444444444 111 11111 11111 22222222 11 33333333333333333333 111111 33333 111111 1111111 1
lowQualScore : 11 77 4 3 3 1 000 5 5 00000000 5 1 1 0 5 5 777 1 0 4 8 222 00 2 0 5 5 66 0 77 2222 77 1 5 222222222222222222 5 5 1 1 0 4 1 5 0000 5 22222 66 7777 7777 4 4 888888888888888 000 777 4 4 55 4 0 2 4 3 00000 55 00000 4 5 5555 5 1 44444444 6 33 6 6 6 77 99999999999999999999 5 444444 66666 1 666666 2 1 1 77 11 1111111 1 0
lowQualScore : .. .. . . . . ... . . ........ . . . . . . ... . . . . ... .. . . . . .. . .. .... .. . . .................. . . . . . . . . .... . ..... .. .... .... . . ............... ... ... . . .. . . . . . ..... .. ..... . . .... . . ........ . .. . . . .. .................... . ...... ..... . ...... . . . .. .. ....... . .
lowQualScore : 88 11 4 5 7 8 000 7 7 77777777 7 7 4 1 0 0 888 1 1 4 9 444 22 0 2 0 0 99 4 99 1111 99 3 7 444444444444444444 7 7 4 4 7 3 7 0 6666 0 55555 99 7777 7777 0 0 222222222222222 222 000 0 0 55 0 9 3 0 0 00000 55 00000 4 0 9999 7 7 22222222 7 33 7 7 7 99 99999999999999999999 0 444444 77777 0 444444 1 0 0 99 55 3333333 4 7
consensus : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTCAGA------------------G-CA-AGGTAC------CAGACCAGCATCTGGTGGCAAAGTCACATCG-C-AGCCNG------GCTACNAATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
Reference ( family-1271 ) : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTCAGA------------------G-CA-AGGTAC------CAGACCAGCATCTGGTGGCAAAGTCACATCG-C-AGCCNG------GCTACTAATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
gi|1 : TGCTGACCAGAAATAT--AAAAAA-GTAGCCAATTACTAAATG-TTGTAGCCGTCGAGTTCTCTTTAGGATTAT---TGTAT-TCTT-TGATGCAAACCACAGTAA--------AC-GGGATCGTAGTTCTCATGCTGCTGATAACAACCATTTT-GTTT-CATTTATA---AGGTAGCCCATATCGGAATTAAGTGGAGA-TTTGGGTAATAGAA-A-TTCTAAATCTGCAGATTTGA-GTCCAAAT-AGGTCGC--GTATTAGACAA--CATAC----ACATT--TGTGG-TCAGTTGTGGTCTTATC---ATACTA-TTGCGACAAGGACAAAATCGCTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACGTCACATCCCATTACATT-CCATTGCAAC----AGAG-CAGGGTGCGAA-----CCCCC-AGCAGCACATCCACTTACTAGACAAG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-CTTG--------C-TTTTTTGCACAAACCCGGAGTAAC-ACGTGGGAAATTACATCCATTCACTAATAACAT---TT-GA-A--GTACAGACTAATGT-GGACGCAGATGCCCTGGTATATACT-ATGTA-----CG--AT-----CTCATGTCACAGTCCTCAGCT-TGTATG-AACAGAAAACGCTGACAATTTCTTCTCTGAAGCAA-TTTTGAAATCCCCTGACCTTGACAACAGACAAACCTGCTTCTCAAC--------ACC-AACAGA-AGA-TG-TTTTCAATCAGAACAAGGTATCAGACCAGCATCTGGTGGAAAAA-CA-AGGTAT------CAGACCATCATCTGCTGGAAAAGTCAAATCA-CGAGTCTG------GCTACAAATGGTATTTGTCA--GGTCAGTTAAATACAACGAATC
gi|10 : gcATTCATA---AGGTAACCCAGATCGGAATTAAG-GGAGA-TTTGTTTAATA-A-----------------GCTTCGA-GTCCAATT-AGGTCGT--GAAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAACTATAACAGTCATTAGGCAAGGTTGCATCCCGGTACATT-CCATTGCGAC----AG----------------------------AGCACATCCACTTATCAGATGTA----ACAGCACA----GTTTAT-ATCAAACAGG-AACTTGGG------TT-TTTTTTACACAAACCTGGAGTAAC-AAATGGGAAATGACATCCATTCACTAATAACA
gi|11 : CATT-CAATTGTGGC----TGAA-CATGGTATGTC-----TCCC--AGCAACACACGCGCTTACGGGATGAG----ACAGCACAAGCAGTTTAT-AG-AAATAGG-AAATTA--------CT-TTGCTTACACAAAACTACAG--ACTCCGTGGGAAA-GACATACACGCACTGACAACAT---TT-GGAA--ATGCATAATAACGT-GGAAGCAGATGTCTC----TTTCTT-TTGCACACTTCA--AT-----ATTATGT
gi|12 : cccTGTTGACCAGAAATATCTTAAAAG-GTATTCCATTACTAAATG-TTGAAGTCGTTGAGT----------AT-AT---TGCAT-TCTT-GGATGTAAACCGCTGTAA--------A---GGCTTGTAGTTCTCATGCTGCTGATAACAGCCATTTT-GTTT-AATTGGTA---AGCTAACCCAGATCGGAATTAAGGGGATA-TTTGGGTGGTA-AA-A-TTCCAAATCCGCAGgg
gi|13 : gtttcatacCGAGTTCTCACTGGGATTACGACTGCATATTTT-GTTTGTTAATCACAGTAACAGCACTAACAGGGCT---ATCTCCCATACCACTGGGAGCCGCCATTTT-GTTTAAATTTAGAATTAGCTATCCCAGATAGGAAT
gi|14 : AAAGAACCTCCATTCACTGGCAACAC---TT-GG-G--ATGCAGACTAACGT-AGAAGCAGTT----CTATGTCTATT--TGCA-----CG--TT-----CTTATGTCG-A-----CAGCT-TGTGTGAAAAAGAAAGCAATGACGTATTCTTTTCTTGACaa
gi|15 : TTTCAATCAG--CATGTCCTCAGA------------------G-CA-AGGTAC------TAGACCAACATC--------AAATAACA------AGCCTG------GCAACAAATAGTATTTGTCA--GGTCAGTTTAATACAAAGAATCAAGCTCCAATGGACGTCC-ACGACAT
gi|16 : TGATAACAACCATTTT-GTTT-AATTCATA---AGCTAACCCAGATCGAAATTAAGTGGAGA-TTTAGGTAGTATGA-A-TTCCAAATCCAC-----CGA-GTCCAAAC-AGGTCGT--GTAATAcat
gi|17 : TGTTGACCAGAGATATCCGAAAAAAGTATCCCATTGCTAAATG-ATGTAGTCG
gi|18 : ttctttgcTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTC
gi|19 : tcttgcTGTTGACCAGAGATATCCGAAAA--GTATCCCATTGCTAAATGAATGTAGTCG
gi|2 : ttctttgcTGTTGACCAGAAATATCCAAAACG-GTATCCCATTACTAAATG-TTGTAGTCGTCGACTTCTCGTTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGAAA--------AC-GAGCTCGTAGCTCTGATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAA-CCAAATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-ATTTCCAAATCCGCAGCTTTGA-GTCCAAGC-AGGTCGT--GTAATAGGCAA--CATAC----ACATG--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAAGACAAAATCGTTG-GTTGTGTTTACATTCTGGATAACTATAACATTCATTAGGCAAGGTTGAATCCCGGCACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTATCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAAG-AACTTGGGTTTTTTTT-TTTTTTACACAAACCTAGAGTAAC-GAGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GT---GAATAATGT-GGAAGCAGATACCCCGGTATCTCCA-ATGTA-----CG--AT-----CTCATGTCACAGTTCTCAGCT-TTTATG-AACAAAAAGCGCTGACTATTTCCTCCCTGGATTAG-TTTTGGAATCTCCTAACCTTGACAACAGACAAACCTGCTTCACAAA--------ACC-A--ACA-A-A-TG-TTTTCAATCAG--CATGTCCTCAGA------------------A-CA-AGGTAC------TTGACTAACATCTGGTGGCAAAGTCACGTCA-TAAGCCTG------GCAACAAATAGTATTTGGCA--GGTCAGTTTAATACAGAGAATCAAGCTCCAGTAGAAGTCC-ACGACAT
gi|20 : TGTTGACCAGAGATATCCGAAAAG-GTATCCCATTGCTAAATG-ATGTAGTCG
gi|21 : ttctttgcTCAGA------------------G-CA-AGGTAC------CAAACCAGCATCTGTTGGCAAAGTCATATCG-C-
gi|22 : gTAATACAAAGAATCAAGCTCCAGTGGAAGTCA-ACGTCATcagtct
gi|3 : TGTTGACCAGAAAGATCCAAAAAG-GTATTCCATTACTAAATG-TTGTTGTCGTCAAGTACTTGCTTTGATTAT---TGCAT-TCTTTGGATGACAATCTCAGTAA--------AC-GGGCTTG---CTCCCATGCTGCTGTTGAC-------------T-AATTTATA---AGCTAACCCAGATCAAAATTAAGTGGAAT-TTTGGGTAGCA-AA-A-TTCCAAATCGGCAGTTCTCA-GCTTCGAT-AGGTCGT--GTA--------------C----ACATT------------------------------AGTA-TTGCGGCAAGGACAAAATCGCTG-GT--------------GGATGGCCATAACAGTCAATA-------TTACTCCCCGGTACATT-CCATTGCGATCGATAGAC-CATGGTGTGAATTTAACCCC--AGCAGCACACCCACCTACCTGATATG----ACAGCACA----GTTTAT-ACCAAACAGGAAA-TCATG---------TTGTTTACATAAACCTGCAGTAAC-ATGTGGG-AATGACATTCATTCACTAATAACAT---TT-GG-A--GTGCAGAA----------------------GATATCTCCT-ACGTA-----CA--AT-----ATCATGTCACAGTCTTCAGCA-TGTAca
gi|3 : ttgcATCTCCTGACTTTGACAACACACAAATGTGCTTTACAAACTTTTGTAATC-A----ATAGA-TG-TTTTCAATCAG--CATGTCCTAAGA------------------G-TA-AGGTACTGGTATCAAACAAGCATCTGGTTGCAAAGTCACATCGCC-AGTCTGAATTTAGATACTCATGTCGGCAACGAAGGGTAAAAT---TACAAAGATTCAAGCTCCAGTGTAAGTCC-ACGGCATtttgtatctcctgactttgacaacacacaaatgtgctttacaaacttttgtaatcaatagatgttttcaatcagcatgtcctaagagtaaggtactggtatcaaacaagcatctggttgcaaagtcacatcgccagtctgaatttagatactcatgtcggcaacgaagggtaaaattacaaagattcaagctccagtgtaagtccacggcat
gi|4 : ttgctgttgaccagaaagatccaaaaaggtattccattactaaatgttgttgtcgtcaagtacttgctttgattattgcattctttggatgacaatctcagtaaacgggcttgctcccatgctgctgttgactaatttataagctaacccagatcaaaattaagtggaattttgggtagcaaaattccaaatcggcagttctcagcttcgataggtcgtgtacacattagtattgcggcaaggacaaaatcgctggtggatggccataacagtcaatattactccccggtacattccattgcgatcgatagaccatggtgtgaatttaaccccagcagcacacccacctacctgatatgacagcacagtttataccaaacaggaaatcatgttgtttacataaacctgcagtaacatgtgggaatgacattcattcactaataacatttggagtgcagaagatatctcctacgtacaatatcatgtcacagtcttcagcatgtatttgtTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTCGAGTTCTCATTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGTTCTCATGCTGCTGATAACAACCATTTTTGTTT-AATTTATA---AGGTAACCCATATCGGAATGAAGTGGAGA-TTTGGGTTATA-AATA-TTTTAAATGCCCAGTTTTGA-GTCCAAAC-AGGTCAT--GTAATAGACAA--CATAC----ACATT--TGTGG-TC-------------TTGTAATAATA-ATGCAGTAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACATTACATCCCTGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCCC-AGCAGCGCATCTACTTACCAGATGTG----ACAGCACA----GTTTAT-ATCAAACAGG-AA-CT-TG------TT-TTTTTTACACAAATCTGGAGTAAC-A--TGGGAAATGACATCCATTCACAAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCTGATACCCCGGTATCTCCT-ATGTA-----CG--AT-----CTTATGTTACAGTCCTCAGCT-TGTATG-AACAGAAAGCGCTGACAATTTTCTCCCTGGACCAG-TTTTG
gi|5 : tttcttgcGAATTAA-TGGA----------AAGA-AA----TCCAAATCGGCTGCTTTGACGTGCAGATTAGATCATTTGTAATAGGGAAAGTATACCATTATATTGCTTTGGGTC-------------TT---ATATTACTTGTGGCAAGAACAAA-TTGTCGCATTTTATT-AC-TGCTGGGTGGCCATG-CAGTT------CAACGCTAC--CCCGGCACATTTCCAT-GCGAC----AGAGGCATGGTGTGAA-----CCCCTAAGAGGCACAGCCACTTACCGGTTGTG----ACAGCTC-----GTTTATTACCAAACAGG-AA---AGC------TT-TGCTGT---TGAACT----GT-------TGGGATGTTTCATCCTGCCATT-ATAACATCTCCT-GA-A--GTGCAGGATAGTGTGGGAAGC-GATACAT--GTATCT-CT-ATGTA-----CGAAATCCATGCCCATGCCATTGTCCTCAGCT-TGAATG-AAAAGAAAGCGATGACATTTTCCTCCCTGGACCGG-TTTCGGTAACTCCTGACCTTGACAACAGACAAACTTGCTTCATAA
gi|6 : ccaaTGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTTACACAAACCTGGAGTAAC-ATGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATGATGT-GGAAGCAGATGCACCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGATAGGTTCCTCTCTGGACCAATTTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTC-GA------------------GACACAAGTAC------CAGGCCAGCATCTGGTGGCAAAGTCACATC-----ACCAG------GCTACTAATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATttttgtttgcaatcaactgattatgtt
gi|7 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTCACACAA-CCTGGAGTAAC-ATGTGG-AAATGACATCCATTCACTAATAACAT---TT-GG-ATGGTACAGAATGATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCTCTGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-A-CAGA-AGA-TG-TTTTCAATCAG--CATGTCCTCAGA------------------A-CA-AGGTAC------CAGGCCAGCATCTGGTTGCAAAGTCACATC-----ACCAG------GCTACTAATTGCGTCTCTCA---GTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATca
gi|8 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TT-GCTTTTACACAAACCTGGAGTAAC-ATGT-GGAAATGACATCCATTCACTAATAACAT---TTGGG-A--GTGCAGAATGATGT-GGAAGCAGATGCCCCGGTATTTCCTCATG-A-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTGTGGAA--TCCTGA-CTTGACAACAGACAAACCCG-TTCACAAA--------ACCAA-CAGA-AGACTGTTTTTCAATCAG--CATGTCCTCAGA------------------A-CA-AGGTAC------CAGGCCAGCATCTGGTGGCAAAGTCACATC-----ACCAG------GCTACTAATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAAT-------CAGTGGAAGTCA-ACCACATcac
gi|9 : T---TGTAA-TCTT-GAATGCAAACCACAGAAA--------AC-GTGCTCGTAGCTCTGATGATGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGAATTTGGGTAATA-AA-AATTCCAAATCCTCAGCTTTGA-GTCCAAAC-AGGTCGT--GTGATAGGCAA--CATAC----ACAGT--TTTGG-TC-------------TT---ATTCTA-TTACGGCAAGGACAAAATCGTTG-GTTTTGTTTTCATTCTGGATAACTGTAACAGTCATTAGGCAAGGTTGTATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCTC--AGCAGCACATCCATTTACCAGATGTGACGTACAGCGCA----GTTTca
Alignments
lowQualScore : 111 22222222 111 1111 333333333333333333 1111 11111 11 444444444444444 111 11111 11111 22222222 1 111111 11111 55555555555555 111111 222222222222 1111111 1
lowQualScore : 11 77 4 3 3 1 000 5 5 00000000 5 1 1 0 5 5 777 1 0 4 8 222 00 2 0 5 5 66 0 77 2222 77 1 5 222222222222222222 5 5 1 1 0 4 1 5 0000 5 22222 66 7777 7777 4 4 888888888888888 000 777 4 4 55 4 0 2 4 3 00000 55 00000 4 5 5555 5 1 44444444 3 6 6 6 6 5 5 444444 22222 66 888 44444444444444 1 666666 0 1 999999999999 1 1 77 11 1111111 1 0
lowQualScore : .. .. . . . . ... . . ........ . . . . . . ... . . . . ... .. . . . . .. . .. .... .. . . .................. . . . . . . . . .... . ..... .. .... .... . . ............... ... ... . . .. . . . . . ..... .. ..... . . .... . . ........ . . . . . . . ...... ..... .. ... .............. . ...... . . ............ . . .. .. ....... . .
lowQualScore : 88 11 4 5 7 8 000 7 7 77777777 7 7 4 1 0 0 888 1 1 4 9 444 22 0 2 0 0 99 4 99 1111 99 3 7 444444444444444444 7 7 4 4 7 3 7 0 6666 0 55555 99 7777 7777 0 0 222222222222222 222 000 0 0 55 0 9 3 0 0 00000 55 00000 4 0 9999 7 7 22222222 3 7 7 7 7 0 0 444444 55555 99 888 77777777777777 0 444444 6 0 333333333333 0 0 99 55 3333333 4 7
consensus : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATC----G-C------AGCCNG------GCTACTA------------ATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
Reference ( family-1271 ) : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATC----G-C------AGCCNG------GCTACNA------------ATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
gi|1 : TGCTGACCAGAAATAT--AAAAAA-GTAGCCAATTACTAAATG-TTGTAGCCGTCGAGTTCTCTTTAGGATTAT---TGTAT-TCTT-TGATGCAAACCACAGTAA--------AC-GGGATCGTAGTTCTCATGCTGCTGATAACAACCATTTT-GTTT-CATTTATA---AGGTAGCCCATATCGGAATTAAGTGGAGA-TTTGGGTAATAGAA-A-TTCTAAATCTGCAGATTTGA-GTCCAAAT-AGGTCGC--GTATTAGACAA--CATAC----ACATT--TGTGG-TCAGTTGTGGTCTTATC---ATACTA-TTGCGACAAGGACAAAATCGCTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACGTCACATCCCATTACATT-CCATTGCAAC----AGAG-CAGGGTGCGAA-----CCCCC-AGCAGCACATCCACTTACTAGACAAG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-CTTG--------C-TTTTTTGCACAAACCCGGAGTAAC-ACGTGGGAAATTACATCCATTCACTAATAACAT---TT-GA-A--GTACAGACTAATGT-GGACGCAGATGCCCTGGTATATACT-ATGTA-----CG--AT-----CTCATGTCACAGTCCTCAGCT-TGTATG-AACAGAAAACGCTGACAATTTCTTCTCTGAAGCAA-TTTTGAAATCCCCTGACCTTGACAACAGACAAACCTGCTTCTCAAC--------ACCAACAGA-AGA-TG-TTTTCAA-----------TCAGAA-CA-AGGTAT------CAGACCAGCATCTGGTGGAAAAACAAGGTATCAGACCATCATCTG-CTGGAAAAGTCAA------ATCACGAGTCTGGCTACAAATGGTATTTGTCA--GGTCAGTTAAATACAACGAATC
gi|10 : gcATTCATA---AGGTAACCCAGATCGGAATTAAG-GGAGA-TTTGTTTAATA-A-----------------GCTTCGA-GTCCAATT-AGGTCGT--GAAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAACTATAACAGTCATTAGGCAAGGTTGCATCCCGGTACATT-CCATTGCGAC----AG----------------------------AGCACATCCACTTATCAGATGTA----ACAGCACA----GTTTAT-ATCAAACAGG-AACTTGGG------TT-TTTTTTACACAAACCTGGAGTAAC-AAATGGGAAATGACATCCATTCACTAATAACA
gi|11 : CATT-CAATTGTGGC----TGAA-CATGGTATGTC-----TCCC--AGCAACACACGCGCTTACGGGATGAG----ACAGCACAAGCAGTTTAT-AG-AAATAGG-AAATTA--------CT-TTGCTTACACAAAACTACAG--ACTCCGTGGGAAA-GACATACACGCACTGACAACAT---TT-GGAA--ATGCATAATAACGT-GGAAGCAGATGTCTC----TTTCTT-TTGCACACTTCA--AT-----ATTATGT
gi|12 : cccTGTTGACCAGAAATATCTTAAAAG-GTATTCCATTACTAAATG-TTGAAGTCGTTGAGT----------AT-AT---TGCAT-TCTT-GGATGTAAACCGCTGTAA--------A---GGCTTGTAGTTCTCATGCTGCTGATAACAGCCATTTT-GTTT-AATTGGTA---AGCTAACCCAGATCGGAATTAAGGGGATA-TTTGGGTGGTA-AA-A-TTCCAAATCCGCAGgg
gi|13 : gtttcatacCGAGTTCTCACTGGGATTACGACTGCATATTTT-GTTTGTTAATCACAGTAACAGCACTAACAGGGCT---ATCTCCCATACCACTGGGAGCCGCCATTTT-GTTTAAATTTAGAATTAGCTATCCCAGATAGGAAT
gi|14 : AAAGAACCTCCATTCACTGGCAACAC---TT-GG-G--ATGCAGACTAACGT-AGAAGCAGTT----CTATGTCTATT--TGCA-----CG--TT-----CTTATGTCG-A-----CAGCT-TGTGTGAAAAAGAAAGCAATGACGTATTCTTTTCTTGACaa
gi|15 : TTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------TAGACCAACATC-------------AAA--TAA---CA---------------AGCCTG------GCAACAA------------ATAGTATTTGTCA--GGTCAGTTTAATACAAAGAATCAAGCTCCAATGGACGTCC-ACGACAT
gi|16 : TGATAACAACCATTTT-GTTT-AATTCATA---AGCTAACCCAGATCGAAATTAAGTGGAGA-TTTAGGTAGTATGA-A-TTCCAAATCCAC-----CGA-GTCCAAAC-AGGTCGT--GTAATAcat
gi|17 : TGTTGACCAGAGATATCCGAAAAAAGTATCCCATTGCTAAATG-ATGTAGTCG
gi|18 : ttctttgcTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTC
gi|19 : tcttgcTGTTGACCAGAGATATCCGAAAA--GTATCCCATTGCTAAATGAATGTAGTCG
gi|2 : ttctttgcTGTTGACCAGAAATATCCAAAACG-GTATCCCATTACTAAATG-TTGTAGTCGTCGACTTCTCGTTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGAAA--------AC-GAGCTCGTAGCTCTGATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAA-CCAAATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-ATTTCCAAATCCGCAGCTTTGA-GTCCAAGC-AGGTCGT--GTAATAGGCAA--CATAC----ACATG--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAAGACAAAATCGTTG-GTTGTGTTTACATTCTGGATAACTATAACATTCATTAGGCAAGGTTGAATCCCGGCACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTATCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAAG-AACTTGGGTTTTTTTT-TTTTTTACACAAACCTAGAGTAAC-GAGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GT---GAATAATGT-GGAAGCAGATACCCCGGTATCTCCA-ATGTA-----CG--AT-----CTCATGTCACAGTTCTCAGCT-TTTATG-AACAAAAAGCGCTGACTATTTCCTCCCTGGATTAG-TTTTGGAATCTCCTAACCTTGACAACAGACAAACCTGCTTCACAAA--------ACC-A-ACA-A-A-TG-TTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------TTGACTAACATCTGGTGG-----CAAAG--TCA---CGTC----A-TA-----AGCCTG------GCAACAA------------ATAGTATTTGGCA--GGTCAGTTTAATACAGAGAATCAAGCTCCAGTAGAAGTCC-ACGACAT
gi|20 : TGTTGACCAGAGATATCCGAAAAG-GTATCCCATTGCTAAATG-ATGTAGTCG
gi|21 : ttctttgcTCAGAG-CA-AGGTAC------CAAACCAGCATCTGTTGG-----CAAAG--TCA---TATC----G-C------
gi|22 : gTAATACAAAGAATCAAGCTCCAGTGGAAGTCA-ACGTCATcagtct
gi|3 : TGTTGACCAGAAAGATCCAAAAAG-GTATTCCATTACTAAATG-TTGTTGTCGTCAAGTACTTGCTTTGATTAT---TGCAT-TCTTTGGATGACAATCTCAGTAA--------AC-GGGCTTG---CTCCCATGCTGCTGTTGAC-------------T-AATTTATA---AGCTAACCCAGATCAAAATTAAGTGGAAT-TTTGGGTAGCA-AA-A-TTCCAAATCGGCAGTTCTCA-GCTTCGAT-AGGTCGT--GTA--------------C----ACATT------------------------------AGTA-TTGCGGCAAGGACAAAATCGCTG-GT--------------GGATGGCCATAACAGTCAATA-------TTACTCCCCGGTACATT-CCATTGCGATCGATAGAC-CATGGTGTGAATTTAACCCC--AGCAGCACACCCACCTACCTGATATG----ACAGCACA----GTTTAT-ACCAAACAGGAAA-TCATG---------TTGTTTACATAAACCTGCAGTAAC-ATGTGGG-AATGACATTCATTCACTAATAACAT---TT-GG-A--GTGCAGAA----------------------GATATCTCCT-ACGTA-----CA--AT-----ATCATGTCACAGTCTTCAGCA-TGTAca
gi|3 : ttgcATCTCCTGACTTTGACAACACACAAATGTGCTTTACAAACTTTTGTAATC-A---ATAGA-TG-TTTTCAATCAGCATGTCCTAAGAG-TA-AGGTACTGGTATCAAACAAGCATCTGGTTG-----CAAAG--TCA---CATC----GCC------AGTCTGAATTTAGATACTC------------ATGTCGGCAACGAAGGGTAAAAT---TACAAAGATTCAAGCTCCAGTGTAAGTCC-ACGGCATtttgtatctcctgactttgacaacacacaaatgtgctttacaaacttttgtaatcaatagatgttttcaatcagcatgtcctaagagtaaggtactggtatcaaacaagcatctggttgcaaagtcacatcgccagtctgaatttagatactcatgtcggcaacgaagggtaaaattacaaagattcaagctccagtgtaagtccacggcat
gi|4 : ttgctgttgaccagaaagatccaaaaaggtattccattactaaatgttgttgtcgtcaagtacttgctttgattattgcattctttggatgacaatctcagtaaacgggcttgctcccatgctgctgttgactaatttataagctaacccagatcaaaattaagtggaattttgggtagcaaaattccaaatcggcagttctcagcttcgataggtcgtgtacacattagtattgcggcaaggacaaaatcgctggtggatggccataacagtcaatattactccccggtacattccattgcgatcgatagaccatggtgtgaatttaaccccagcagcacacccacctacctgatatgacagcacagtttataccaaacaggaaatcatgttgtttacataaacctgcagtaacatgtgggaatgacattcattcactaataacatttggagtgcagaagatatctcctacgtacaatatcatgtcacagtcttcagcatgtatttgtTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTCGAGTTCTCATTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGTTCTCATGCTGCTGATAACAACCATTTTTGTTT-AATTTATA---AGGTAACCCATATCGGAATGAAGTGGAGA-TTTGGGTTATA-AATA-TTTTAAATGCCCAGTTTTGA-GTCCAAAC-AGGTCAT--GTAATAGACAA--CATAC----ACATT--TGTGG-TC-------------TTGTAATAATA-ATGCAGTAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACATTACATCCCTGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCCC-AGCAGCGCATCTACTTACCAGATGTG----ACAGCACA----GTTTAT-ATCAAACAGG-AA-CT-TG------TT-TTTTTTACACAAATCTGGAGTAAC-A--TGGGAAATGACATCCATTCACAAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCTGATACCCCGGTATCTCCT-ATGTA-----CG--AT-----CTTATGTTACAGTCCTCAGCT-TGTATG-AACAGAAAGCGCTGACAATTTTCTCCCTGGACCAG-TTTTG
gi|5 : tttcttgcGAATTAA-TGGA----------AAGA-AA----TCCAAATCGGCTGCTTTGACGTGCAGATTAGATCATTTGTAATAGGGAAAGTATACCATTATATTGCTTTGGGTC-------------TT---ATATTACTTGTGGCAAGAACAAA-TTGTCGCATTTTATT-AC-TGCTGGGTGGCCATG-CAGTT------CAACGCTAC--CCCGGCACATTTCCAT-GCGAC----AGAGGCATGGTGTGAA-----CCCCTAAGAGGCACAGCCACTTACCGGTTGTG----ACAGCTC-----GTTTATTACCAAACAGG-AA---AGC------TT-TGCTGT---TGAACT----GT-------TGGGATGTTTCATCCTGCCATT-ATAACATCTCCT-GA-A--GTGCAGGATAGTGTGGGAAGC-GATACAT--GTATCT-CT-ATGTA-----CGAAATCCATGCCCATGCCATTGTCCTCAGCT-TGAATG-AAAAGAAAGCGATGACATTTTCCTCCCTGGACCGG-TTTCGGTAACTCCTGACCTTGACAACAGACAAACTTGCTTCATAA
gi|6 : ccaaTGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTTACACAAACCTGGAGTAAC-ATGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATGATGT-GGAAGCAGATGCACCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGATAGGTTCCTCTCTGGACCAATTTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTC-GAGACACAAGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATttttgtttgcaatcaactgattatgtt
gi|7 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TTGCTTTTCACACAA-CCTGGAGTAAC-ATGTGG-AAATGACATCCATTCACTAATAACAT---TT-GG-ATGGTACAGAATGATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCTCTGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------CAGGCCAGCATCTGGTTG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA---GTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATca
gi|8 : TGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA---AGA------TT-GCTTTTACACAAACCTGGAGTAAC-ATGT-GGAAATGACATCCATTCACTAATAACAT---TTGGG-A--GTGCAGAATGATGT-GGAAGCAGATGCCCCGGTATTTCCTCATG-A-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTGTGGAA--TCCTGA-CTTGACAACAGACAAACCCG-TTCACAAA--------ACCAACAGA-AGACTGTTTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC--------------ACCAG------GCTACTA------------ATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAAT-------CAGTGGAAGTCA-ACCACATcac
gi|9 : T---TGTAA-TCTT-GAATGCAAACCACAGAAA--------AC-GTGCTCGTAGCTCTGATGATGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGAATTTGGGTAATA-AA-AATTCCAAATCCTCAGCTTTGA-GTCCAAAC-AGGTCGT--GTGATAGGCAA--CATAC----ACAGT--TTTGG-TC-------------TT---ATTCTA-TTACGGCAAGGACAAAATCGTTG-GTTTTGTTTTCATTCTGGATAACTGTAACAGTCATTAGGCAAGGTTGTATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCTC--AGCAGCACATCCATTTACCAGATGTGACGTACAGCGCA----GTTTca
blockSeqs : TT AA A T A G GAC A T CAGCACTA A T T T A ATT G A T AT A C T TT AG CATT GC T G TTGTA C C T A G A T CGAT G TTTAA TA ACGT AGCA T A CTTGGGTTTTTTTT TCC CTC G A TG G G C C CACTT AA CCATG C A CGTA T T CTTTTGTA A C T C T A C TGGTAT . . . ATAA T AATTTA A . A G AG TA TCAAGCT A
blockSeqs : CG G . T G A . . . . . C T . . . C . . TA A . . . . . . T . TT . . T A G A . . . . C . . . . CTTGGGTT AA . . . . . A . C . . . . . CTAT . T . . C . . . . . . . . . GCCA T . A . A G . TA TCAAGCT A
blockSeqs : AA A . A G T . . . . . T T . . . C . . AA A . . . . . . G . TT . . T A C T . . . . . . . . . ATTACT GA . . . . . A . T . . . . . CAAT . A . . C . . . . . . . . . A T . T . G A . TA TCAAGCT .
blockSeqs : CG G . T A A . . . . . C T . . . C . . A A . . . . . . T . TT . . T A C A . . . . . . . . . CTTGTT AT . . . . . A . T . . . . . CATT . T . . . . . . . . . . . . . A . T . T C . TG A .
blockSeqs : CA G . . . . . . . . . C . . . . G . . A T . . . . . . T . TT . . . . G A . . . . . . . . . AGATTG AT . . . . . G . T . . . . . TAGG . T . . . . . . . . . . . . . A . T . T C . TG A .
blockSeqs : CG G . . . . . . . . . . . C . . A A . . . . . . . . . . . . . . . . . . . . . . . . AGATTG AT . . . . . G . T . . . . . TAG . . . . . . . . . A . T . T C . TG T .
blockSeqs : CA A . . . . G . . . . . . . . . . . . . . . . TCATG AT . . . . . G . C . . . . . TAG . . . . . . .
blockSeqs : AA . . . G . . . . . . . . AGCTT A . . . . . . . C . . . .
blockSeqs : . . . . AGATT . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : CG A** TT**************** ** AGGTT********** ***** ** *** AA************ ************ TCAAGCT
originalCons : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AA-TTAGG------TT-TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATC----G-C------AGCCNG------GCTACTA------------ATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
finalCons : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AAA--TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TCTT----------------ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCACA----GTTTAT-ACCAAACAGG-AAAGGTT----------TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATCAA------------GCCNG------GCTACTA------------ATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
Alignments
lowQualScore : 111 22222222 111 1111 333333333333333333 1111 11111 11 44444444444444 11 111 11111 11111 22222222 1 111111 11111 777777777777777777777777777 111111 1111111 1
lowQualScore : 11 77 4 3 3 1 000 5 5 00000000 5 1 1 0 5 5 777 1 0 4 8 222 00 2 0 5 5 66 0 77 2222 77 1 5 222222222222222222 5 5 1 1 0 4 1 5 0000 5 22222 66 7777 7777 4 11111111111111 33 000 777 4 4 55 4 0 2 4 3 00000 55 00000 4 5 5555 5 1 44444444 3 6 6 6 6 5 5 444444 22222 66 888 111111111111111111111111111 1 444444 2 1 1 77 11 1111111 1 0
lowQualScore : .. .. . . . . ... . . ........ . . . . . . ... . . . . ... .. . . . . .. . .. .... .. . . .................. . . . . . . . . .... . ..... .. .... .... . .............. .. ... ... . . .. . . . . . ..... .. ..... . . .... . . ........ . . . . . . . ...... ..... .. ... ........................... . ...... . . . .. .. ....... . .
lowQualScore : 88 11 4 5 7 8 000 7 7 77777777 7 7 4 1 0 0 888 1 1 4 9 444 22 0 2 0 0 99 4 99 1111 99 3 7 444444444444444444 7 7 4 4 7 3 7 0 6666 0 55555 99 7777 7777 0 88888888888888 55 222 000 0 0 55 0 9 3 0 0 00000 55 00000 4 0 9999 7 7 22222222 3 7 7 7 7 0 0 444444 55555 99 888 444444444444444444444444444 0 444444 1 0 0 99 55 3333333 4 7
consensus : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCA----CAGTTTAT-ACCAAACAGGAA---A-G-A------TT--TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATC--A-----------------------AGCCNG------GCTACNAATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
Reference ( family-1271 ) : TGTTGACCAGAAATATCCGAAAAG-GTATCCCATTACTAAATG-TTGTAGTCGTCGAGTTCTCGTTAGGATTAT---TGCAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGCTCTCATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-A-TTCCAAATCCGCAGCTTTGA-GTCCAAAC-AGGTCGT--GTAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATTAGGCAACGTTGCATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTACCAGATGTG----ACAGCA----CAGTTTAT-ACCAAACAGGAA---A-G-G------TT--TTTTTTACACAAACCTGGAGTAAC-ACGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGACNANTTCCTCTCTGGACCAG-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------CAGACCAGCATCTGGTGG-----CAAAG--TCA---CATC--A-----------------------AGCCNG------GCTACTAATNGCGTCTNTCA--GGTCAGTTTGATACAAAGAATCAAGCTCCAGTGGAAGTCC-ACGACAT
gi|1 : TGCTGACCAGAAATAT--AAAAAA-GTAGCCAATTACTAAATG-TTGTAGCCGTCGAGTTCTCTTTAGGATTAT---TGTAT-TCTT-TGATGCAAACCACAGTAA--------AC-GGGATCGTAGTTCTCATGCTGCTGATAACAACCATTTT-GTTT-CATTTATA---AGGTAGCCCATATCGGAATTAAGTGGAGA-TTTGGGTAATAGAA-A-TTCTAAATCTGCAGATTTGA-GTCCAAAT-AGGTCGC--GTATTAGACAA--CATAC----ACATT--TGTGG-TCAGTTGTGGTCTTATC---ATACTA-TTGCGACAAGGACAAAATCGCTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACGTCACATCCCATTACATT-CCATTGCAAC----AGAG-CAGGGTGCGAA-----CCCCC-AGCAGCACATCCACTTACTAGACAAG----ACAGCA----CAGTTTAT-ACCAAACAGGAA-------C------TTGCTTTTTTGCACAAACCCGGAGTAAC-ACGTGGGAAATTACATCCATTCACTAATAACAT---TT-GA-A--GTACAGACTAATGT-GGACGCAGATGCCCTGGTATATACT-ATGTA-----CG--AT-----CTCATGTCACAGTCCTCAGCT-TGTATG-AACAGAAAACGCTGACAATTTCTTCTCTGAAGCAA-TTTTGAAATCCCCTGACCTTGACAACAGACAAACCTGCTTCTCAAC--------ACCAACAGA-AGA-TG-TTTTCAA-----------TCAGAA-CA-AGGTAT------CAGACCAGCATCTGGTGGAAAAACAAGGTATCAGACCATC--ATCTGCTGGAAAAGTCAAATCACGAGTCTG------GCTACAAATGGTATTTGTCA--GGTCAGTTAAATACAACGAATC
gi|10 : gcATTCATA---AGGTAACCCAGATCGGAATTAAG-GGAGA-TTTGTTTAATA-A-----------------GCTTCGA-GTCCAATT-AGGTCGT--GAAATAGGCAA--CATAC----ACATT--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAACTATAACAGTCATTAGGCAAGGTTGCATCCCGGTACATT-CCATTGCGAC----AG----------------------------AGCACATCCACTTATCAGATGTA----ACAGCA----CAGTTTAT-ATCAAACAGGAACTTG-G-G------TT--TTTTTTACACAAACCTGGAGTAAC-AAATGGGAAATGACATCCATTCACTAATAACA
gi|11 : CATT-CAATTGTGGC----TGAA-CATGGTATGTC-----TCCC--AGCAACACACGCGCTTACGGGATGAG----ACAGCACAAGCAGTTTAT-A-GAAATAGGAA---ATT-A------CT--TTGCTTACACAAAACTACAG--ACTCCGTGGGAAA-GACATACACGCACTGACAACAT---TT-GGAA--ATGCATAATAACGT-GGAAGCAGATGTCTC----TTTCTT-TTGCACACTTCA--AT-----ATTATGT
gi|12 : cccTGTTGACCAGAAATATCTTAAAAG-GTATTCCATTACTAAATG-TTGAAGTCGTTGAGT----------AT-AT---TGCAT-TCTT-GGATGTAAACCGCTGTAA--------A---GGCTTGTAGTTCTCATGCTGCTGATAACAGCCATTTT-GTTT-AATTGGTA---AGCTAACCCAGATCGGAATTAAGGGGATA-TTTGGGTGGTA-AA-A-TTCCAAATCCGCAGgg
gi|13 : gtttcatacCGAGTTCTCACTGGGATTACGACTGCATATTTT-GTTTGTTAATCACAGTAACAGCACTAACAGGGCT---ATCTCCCATACCACTGGGAGCCGCCATTTT-GTTTAAATTTAGAATTAGCTATCCCAGATAGGAAT
gi|14 : AAAGAACCTCCATTCACTGGCAACAC---TT-GG-G--ATGCAGACTAACGT-AGAAGCAGTT----CTATGTCTATT--TGCA-----CG--TT-----CTTATGTCG-A-----CAGCT-TGTGTGAAAAAGAAAGCAATGACGTATTCTTTTCTTGACaa
gi|15 : TTTCAATCAGCATGTCCTCAGAG-CA-AGGTAC------TAGACCAACATC-------------AAA--TAA------C--A-----------------------AGCCTG------GCAACAAATAGTATTTGTCA--GGTCAGTTTAATACAAAGAATCAAGCTCCAATGGACGTCC-ACGACAT
gi|16 : TGATAACAACCATTTT-GTTT-AATTCATA---AGCTAACCCAGATCGAAATTAAGTGGAGA-TTTAGGTAGTATGA-A-TTCCAAATCCAC-----CGA-GTCCAAAC-AGGTCGT--GTAATAcat
gi|17 : TGTTGACCAGAGATATCCGAAAAAAGTATCCCATTGCTAAATG-ATGTAGTCG
gi|18 : ttctttgcTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTC
gi|19 : tcttgcTGTTGACCAGAGATATCCGAAAA--GTATCCCATTGCTAAATGAATGTAGTCG
gi|2 : ttctttgcTGTTGACCAGAAATATCCAAAACG-GTATCCCATTACTAAATG-TTGTAGTCGTCGACTTCTCGTTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGAAA--------AC-GAGCTCGTAGCTCTGATGCTGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAA-CCAAATCGGAATTAAGTGGAGA-TTTGGGTAATA-AA-ATTTCCAAATCCGCAGCTTTGA-GTCCAAGC-AGGTCGT--GTAATAGGCAA--CATAC----ACATG--TTTGG-TC-------------TT---ATACTA-TTGCGGCAAAGACAAAATCGTTG-GTTGTGTTTACATTCTGGATAACTATAACATTCATTAGGCAAGGTTGAATCCCGGCACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCC--AGCAGCACATCCACTTATCAGATGTG----ACAGCA----CAGTTTAT-ACCAAACAAGAACTTG-G-GTTTTTTTT--TTTTTTACACAAACCTAGAGTAAC-GAGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GT---GAATAATGT-GGAAGCAGATACCCCGGTATCTCCA-ATGTA-----CG--AT-----CTCATGTCACAGTTCTCAGCT-TTTATG-AACAAAAAGCGCTGACTATTTCCTCCCTGGATTAG-TTTTGGAATCTCCTAACCTTGACAACAGACAAACCTGCTTCACAAA--------ACC-A-ACA-A-A-TG-TTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------TTGACTAACATCTGGTGG-----CAAAG--TCA---CGTCATA-----------------------AGCCTG------GCAACAAATAGTATTTGGCA--GGTCAGTTTAATACAGAGAATCAAGCTCCAGTAGAAGTCC-ACGACAT
gi|20 : TGTTGACCAGAGATATCCGAAAAG-GTATCCCATTGCTAAATG-ATGTAGTCG
gi|21 : ttctttgcTCAGAG-CA-AGGTAC------CAAACCAGCATCTGTTGG-----CAAAG--TCA---TATC---------------------------GCCAG------TCT
gi|22 : gTAATACAAAGAATCAAGCTCCAGTGGAAGTCA-ACGTCAT
gi|3 : TGTTGACCAGAAAGATCCAAAAAG-GTATTCCATTACTAAATG-TTGTTGTCGTCAAGTACTTGCTTTGATTAT---TGCAT-TCTTTGGATGACAATCTCAGTAA--------AC-GGGCTTG---CTCCCATGCTGCTGTTGAC-------------T-AATTTATA---AGCTAACCCAGATCAAAATTAAGTGGAAT-TTTGGGTAGCA-AA-A-TTCCAAATCGGCAGTTCTCA-GCTTCGAT-AGGTCGT--GTA--------------C----ACATT------------------------------AGTA-TTGCGGCAAGGACAAAATCGCTG-GT--------------GGATGGCCATAACAGTCAATA-------TTACTCCCCGGTACATT-CCATTGCGATCGATAGAC-CATGGTGTGAATTTAACCCC--AGCAGCACACCCACCTACCTGATATG----ACAGCA----CAGTTTAT-ACCAAACAGGAA---ATC-A------TG--TTGTTTACATAAACCTGCAGTAAC-ATGTGGG-AATGACATTCATTCACTAATAACAT---TT-GG-A--GTGCAGAA----------------------GATATCTCCT-ACGTA-----CA--AT-----ATCATGTCACAGTCTTCAGCA-TGTAca
gi|3 : ttgcATCTCCTGACTTTGACAACACACAAATGTGCTTTACAAACTTTTGTAATC-A---ATAGA-TG-TTTTCAATCAGCATGTCCTAAGAG-TA-AGGTACTGGTATCAAACAAGCATCTGGTTG-----CAAAG--TCA---CATC--GCC---------------------AGTCTGAATTTAGATACTCATGTCGGCAACGAAGGGTAAAAT---TACAAAGATTCAAGCTCCAGTGTAAGTCC-ACGGCATtttgtatctcctgactttgacaacacacaaatgtgctttacaaacttttgtaatcaatagatgttttcaatcagcatgtcctaagagtaaggtactggtatcaaacaagcatctggttgcaaagtcacatcgccagtctgaatttagatactcatgtcggcaacgaagggtaaaattacaaagattcaagctccagtgtaagtccacggcat
gi|4 : ttgctgttgaccagaaagatccaaaaaggtattccattactaaatgttgttgtcgtcaagtacttgctttgattattgcattctttggatgacaatctcagtaaacgggcttgctcccatgctgctgttgactaatttataagctaacccagatcaaaattaagtggaattttgggtagcaaaattccaaatcggcagttctcagcttcgataggtcgtgtacacattagtattgcggcaaggacaaaatcgctggtggatggccataacagtcaatattactccccggtacattccattgcgatcgatagaccatggtgtgaatttaaccccagcagcacacccacctacctgatatgacagcacagtttataccaaacaggaaatcatgttgtttacataaacctgcagtaacatgtgggaatgacattcattcactaataacatttggagtgcagaagatatctcctacgtacaatatcatgtcacagtcttcagcatgtatttgtTGTTGACCAGAAATATCAAAAAAA-GTATATCATTACTAAATG-TTGTAGCCGTCGAGTTCTCATTAGGATTAT---TGTAT-TCTT-GGATGCAAACCACAGTAA--------AC-GGGCTCGTAGTTCTCATGCTGCTGATAACAACCATTTTTGTTT-AATTTATA---AGGTAACCCATATCGGAATGAAGTGGAGA-TTTGGGTTATA-AATA-TTTTAAATGCCCAGTTTTGA-GTCCAAAC-AGGTCAT--GTAATAGACAA--CATAC----ACATT--TGTGG-TC-------------TTGTAATAATA-ATGCAGTAAGGACAAAATCGTTG-GTTTTGTTTACATTCTGGATAGCCATAACAGTCATCAGGCAACATTACATCCCTGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCCCC-AGCAGCGCATCTACTTACCAGATGTG----ACAGCA----CAGTTTAT-ATCAAACAGGAA---C-TTG------TT--TTTTTTACACAAATCTGGAGTAAC-A--TGGGAAATGACATCCATTCACAAATAACAT---TT-GG-A--GTGCAGAATAATGT-GGAAGCTGATACCCCGGTATCTCCT-ATGTA-----CG--AT-----CTTATGTTACAGTCCTCAGCT-TGTATG-AACAGAAAGCGCTGACAATTTTCTCCCTGGACCAG-TTTTG
gi|5 : tttcttgcGAATTAA-TGGA----------AAGA-AA----TCCAAATCGGCTGCTTTGACGTGCAGATTAGATCATTTGTAATAGGGAAAGTATACCATTATATTGCTTTGGGTC-------------TT---ATATTACTTGTGGCAAGAACAAA-TTGTCGCATTTTATT-AC-TGCTGGGTGGCCATG-CAGTT------CAACGCTAC--CCCGGCACATTTCCAT-GCGAC----AGAGGCATGGTGTGAA-----CCCCTAAGAGGCACAGCCACTTACCGGTTGTG----ACAGCT----C-GTTTATTACCAAACAGGAA---A-G-C------TT--TGCTGT---TGAACT----GT-------TGGGATGTTTCATCCTGCCATT-ATAACATCTCCT-GA-A--GTGCAGGATAGTGTGGGAAGC-GATACAT--GTATCT-CT-ATGTA-----CGAAATCCATGCCCATGCCATTGTCCTCAGCT-TGAATG-AAAAGAAAGCGATGACATTTTCCTCCCTGGACCGG-TTTCGGTAACTCCTGACCTTGACAACAGACAAACTTGCTTCATAA
gi|6 : ccaaTGTG----ACAGCA----CAGTTTAT-ACCAAACAGGAA---A-G-A------TTG-CTTTTTACACAAACCTGGAGTAAC-ATGTGGGAAATGACATCCATTCACTAATAACAT---TT-GG-A--GTGCAGAATGATGT-GGAAGCAGATGCACCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGATAGGTTCCTCTCTGGACCAATTTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTC-GAGACACAAGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC--A-------------------------CCAG------GCTACTAATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATttttgtttgcaatcaactgattatgtt
gi|7 : TGTG----ACAGCA----CAGTTTAT-ACCAAACAGGAA---A-G-A------TTG-CTTTTCACACAA-CCTGGAGTAAC-ATGTGG-AAATGACATCCATTCACTAATAACAT---TT-GG-ATGGTACAGAATGATGT-GGAAGCAGATGCCCCGGTATCTCCT-ATGCA-----CG--AT-----CTTATGTCACAGTCCTCAGCTCTGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTTTGGAATCTCCTGACCTTGACAACAGACAAACCCGCTTCACAAA--------ACC-ACAGA-AGA-TG-TTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------CAGGCCAGCATCTGGTTG-----CAAAG--TCA---CATC--A-------------------------CCAG------GCTACTAATTGCGTCTCTCA---GTCAGTTTGATACAAAAAA--A----TCAGTGGAAGTTCAACCACATca
gi|8 : TGTG----ACAGCA----CAGTTTAT-ACCAAACAGGAA---A-G-A------TT--GCTTTTACACAAACCTGGAGTAAC-ATGT-GGAAATGACATCCATTCACTAATAACAT---TTGGG-A--GTGCAGAATGATGT-GGAAGCAGATGCCCCGGTATTTCCTCATG-A-----CG--AT-----CTTATGTCACAGTCCTCAGCT-TGTACG-AACAGAAAGCGATGA-TAGGTCCTCTCTGGACCAA-TTGTGGAA--TCCTGA-CTTGACAACAGACAAACCCG-TTCACAAA--------ACCAACAGA-AGACTGTTTTTCAATCAGCATGTCCTCAGAA-CA-AGGTAC------CAGGCCAGCATCTGGTGG-----CAAAG--TCA---CATC--A-------------------------CCAG------GCTACTAATTGCGTCTCTCA--GGTCAGTTTGATACAAAAAAT-------CAGTGGAAGTCA-ACCACATcac
gi|9 : T---TGTAA-TCTT-GAATGCAAACCACAGAAA--------AC-GTGCTCGTAGCTCTGATGATGCTGATAACAACCATTTT-GTTT-AATTCATA---AGGTAACCCAGATCGGAATTAAGTGGAGAATTTGGGTAATA-AA-AATTCCAAATCCTCAGCTTTGA-GTCCAAAC-AGGTCGT--GTGATAGGCAA--CATAC----ACAGT--TTTGG-TC-------------TT---ATTCTA-TTACGGCAAGGACAAAATCGTTG-GTTTTGTTTTCATTCTGGATAACTGTAACAGTCATTAGGCAAGGTTGTATCCCGGTACATT-CCATTGCGAC----AGAG-CATGGTGTGAA-----CCTC--AGCAGCACATCCATTTACCAGATGTGACGTACAGCG----CAGTTTca