lowQualScore : 222222222222222222222222222222222222222222222222222222222222 111111111111111111111111 1111111111111111111111111 11111111111 11111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777777777 111111111111111111111111111111111111111111111111111111111111 11 6666666666666666666666666666666 1111 44444 1111 000000000000000000000000 4444444 666666 4444444 11 111 111 1111111 111 5555555555 2 444 2 22 222 66666666666666 1 2222 1 2222222222222 3333333 11111 3333333333333333333333333 55555555555555555 33333 1 333 00000000000 22 11 1 2222 6666666666666666 1 2222222 1 111 33333333 777777777777 11 11 11 44 444 1 33 2 333333333 22222222 33 1 1 11111 7777777777777777 3 1 55555555555555 1 4 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333 1 3333 6666666666666666 2 111 3 6666666666 111 111 3 1 11 111 7777777777777 22 1 111 22 1 1111111111
lowQualScore : 99999999999999999 888888888888888888888888888888888888888888888888888888888888 77 5555555555555555555555555555555 4444 99999 4444 99 666666666666666666666666 7777777 2 888888 1 3333333 22 4 6 0 0 000 0 5 000 5 0 5 8888888 0 1 77 000 7 2 55 1 5 5 5 5 4 9999999999 3 3 111 5 6 11 666 5 5 0 5 66666666666666 5 7 5 6 4444 1 2222222222222 4444444 6 4 55555 6 4444444444444444444444444 1 11111111111111111 00000 0 777 44444444444 3 55 5 55 3 5 5 1111 66 0 55 8888888888888888 888 9 99 5 5 5 6666666 4 4 4 4 4 2 4 4 1 1 0 111 5 00000000 5 3 3 000000000000 2 33 2 77 22 2 22 3 555 2 0 44 1 333333333 00000000 66 0 0 11111 6666666666666666 4 0 99999999999999 7 0 7 2 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7 00 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 8888 0 8888 8 8 0 3333333333333333 5 5 8 6 5 5 77 555 333 3 8 0000000000 77 5 888 6 6 8 444 0 0 11 6 888 6 6 2222222222222 00 2 000 55 1 5 5 5 7777777777
lowQualScore : ................. ............................................................ .. ............................... .... ..... .... .. ........................ ....... . ...... . ....... .. . . . . ... . . ... . . . ....... . . .. ... . . .. . . . . . . .......... . . ... . . .. ... . . . . .............. . . . . .... . ............. ....... . . ..... . ......................... . ................. ..... . ... ........... . .. . .. . . . .... .. . .. ................ ... . .. . . . ....... . . . . . . . . . . . ... . ........ . . . ............ . .. . .. .. . .. . ... . . .. . ......... ........ .. . . ..... ................ . . .............. . . . . ................................................................................................................... . .. .............................................................................................................................................................. .... . .... . . . ................ . . . . . . .. ... ... . . .......... .. . ... . . . ... . . .. . ... . . ............. .. . ... .. . . . . ..........
lowQualScore : 33333333333333333 888888888888888888888888888888888888888888888888888888888888 55 3333333333333333333333333333333 2222 22222 2222 22 888888888888888888888888 2222222 5 333333 0 3333333 77 7 3 7 1 000 7 7 000 7 1 7 6666666 1 4 11 000 9 7 99 7 7 7 7 9 7 6666666666 7 3 444 7 0 44 999 0 7 1 7 77777777777777 1 1 7 6 1111 4 1111111111111 2222222 7 8 22222 7 3333333333333333333333333 0 33333333333333333 11111 9 999 11111111111 2 11 0 66 4 0 0 1111 99 1 11 1111111111111111 888 4 44 0 9 0 0000000 3 4 4 4 4 2 4 4 1 1 4 444 9 00000000 0 2 2 000000000000 5 22 5 00 55 5 55 2 222 5 0 55 2 888888888 22222222 22 0 0 22222 2222222222222222 2 0 22222222222222 0 0 3 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 00 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5555 0 7777 0 0 6 4444444444444444 7 7 6 0 7 7 99 999 999 0 6 3333333333 99 7 777 7 7 0 000 0 0 00 7 555 7 0 3333333333333 77 0 000 00 4 7 7 7 4444444444
consensus : ACTGAAATATG-TATATAG---AATAGTGATGGAGGCA-----------------CGTTT------------NTTTTGTTT--------GTTT---GTTTTTTTTTTTT------------GCT-------T--------ATT----TTAATTAA---TATT----TGCATTGGAAGAG--GGGACACGAGTACGAG--------GATGT--GCCCCACTACA---TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTC-----TNTCACAACTT-CCCTTGAAGTTGACATAATAGATCCAACACT---TGTTATGAGGCT-GAT---CA-GTGTGGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAAGTGTTCAT--CATA--TCTTCCAC-CCAAAT-TAAATT-CCC-ACCTC-TTGAAGCCCCT--AAATCTA-TTACC-AAC-G--TN-----TATATATATAAGAAGCCCCTGAAAA-TGACTGTGGGTGGGCTGAGA-G-CATA-TATAGTA--GCA-----TAGACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAATTT--GA-CTGGATATAGCA-AGCTCCTTGTAAGCTCCTT------------GTGACTAACCCCC-------CCC-------TTTTTCATT-ACAAAATAT-CTTCTGTCAGTA---------AGATTCAGCAA-TCAT-CATTGTCAAGCAAA-AGA---CCAATAT--CAATGTATGCAGAGCTT-ATGATGTT-AGACT-TTAACGA---ATTGGAAAACATGCTAAAATANG-GCTGAATAAATA-T-ACACAACCAAT-A-G-AGACCGA-TTCCCAGTACA-TG-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTT--NANGGGGTGGTGAATCCAGCACTACA-------GTTCTGTTGGC-TGGCTCTGAGTGACCCT-G---------GGAGAGATTCA-GTCATTCTGGT-CTGTCT-CAGTGGAT-GGGTCTGGTG---TGCCTGTG-CACAATTTAGCCATCTTGGGTGACTGCGGCTTA---CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATCTCTAAATTT---CTTGGGAGG----CATTTT-CCTCGTGG-AA--G-----------AAACAATAATATGCA-TTAGATCTAGTTTTTTTTTTCTTTCTTTCTTTCTTTTTCCCATATTAGAGAGAGCGAGAGCGTG-AATTNTG--TGC-CCAATGACCAATTTATNTNAATAAATCAT--AAGCACCT-AAG-GCGT--ATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTATTTT--AATGAAACGA-ATTTTC-AATCCA--T--GCC-ATCGAAGGA-AAAT----ACCA-ATC-ATATCTGA-GAA-AATTCG-CCACG-C----AATA-GACCCTTATAA-CAA-TTGAAAT-AG-ATT-TTTTAATCT--AT-ATTAGTGATAANAATAATA-AAA-GTTATT-C-T-TA---TT-AC-AA-ATTC-AATTA-T-G--CAC-A-CCC-A-CATGT-ATTGAACCTACTTG-TAT-CCGA-TGGA--TGGG-TGAAAAGGAGGAAAA--TCCGAATA-C-ACCCGGC-TTT---TA-TAGTGCTA--CAG-CCG-GCAGGC-CGAACCCG-ACCG---AAA-TCAAAC-CCCGTTTTTC---TCGTAAAATA-AA-GTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
Reference ( gi|1 ) : ACTGA-----G-TATATAAGA-AATAGTGATGGAGGC------------------CGATT------------ATTGTGTT---------GTT----GTTTTTTTTGGTT------------GTT-------T--------ATT----TTAATTT----TATT----TGCATTGGAAGAG--GGGACAC-AG-----G--------GATGTTGGCCCCAC-ACAC--TCCTATGCACT-ATGGACCAGTATTAACAGGCTGGTC-----ATTCACAACTC-CCCTTGAAGTTGAAATGATAGATCCAACACT---TGTTATGAGGCT-GAT---TA-GTGTGGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAC-C---AGCCACACCTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTAAATTGTTCAT--CATAAGTCCTCCACTCCAA---TAAATT-CCCTACCTC-TTGAAGCCCCT--AAATCTA-TTACC-A------TG-----CATATATATAAGAAGCCCTTG-AAA-TGACTGTGGGTGGGCTGAG--G-CATA-TATAGTA--AAA-----TGAACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAATCT--GC-CTGGATATAGCA-AGCTCC------------T------------GTAACTAACCCCC-------CCC-------TTTTTCG-T-ACAGAATA--CTTCTGTCAGTAC--TACAGAAGATTCAGCAATTCAT-CATTGTCAAGC-AA-AGG---CCAATAT--CAATGTATGCAGAGCTT-GTGAT-TT-AAA---TTA---A---ATTGGAAAAAATGCT-AAATATG-GCTGAATAAATA-T-ATACAACCAAT-A-G-AGACCGA-TTCCCAGTACA-TG-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTT--GAAGGGGTGGTAAATCCAGCACTACT-------GTTCTGTTGGC-TGGCTCTGAGTGACCC--G---------GGAGAGATTCA-GTCATTCTGGT-CTGTCT-CAGTGGATGGGGTCTGGTG--ATGCCTGTG-TAACATTTAGCCATCTTGTGTGACTGTGACGTA---CGTGTAGTACTAGTTAGGCTTCTGGTAATT-TC-TC-ACTCCTAAATTTTGCTTTGGGAGGC-T-CATTTTACCTCGTGG-AA--G-----------AAACAATAATTTGCAGTTAGATCTAATTT--------------------TTTTCCCCATGGGAGAGAAAGCGAGTGCGTGAAATTCTGTATGCACAAATGACCCATTTACCTC-ATATTTCATACAAGCACCTCAAG-GCG---ATTTGCACACATTCCTAAAATTGTTGGTCATGGCGCCCGGACGATTGCCACTGGCTGGTATTTTTAAATGAAACGACATTTTCAAATCCAGGTGGGCCAATCGAAGGATAAATGGATATTA-ATC-ATATCTGACGAACAATTCGTCCACGACAAAAAATA-GACCTCTAT-A-CAA-T--AAGT-AGAATTATTTTAAT-T--AT-ATTAGTGA-AAGAATAATA-AAA-GTTATTGCGT-TA---TT-AG-AA-ATTC-A-TCA-T-G--CAC-A-CCC-A-CATGTTATTGAACCTGCTTG-TATTCCGAATGGA--TGGG-TGAAAAGGAGGAAAA--ACCGAATA-C-ACCCGGC-TTT---TAGTACTGCTA--TAG-CCG-GCAGGC-CGAACCTGAACCGGATAAATTCAAAC-CCCGTTTTTC---TCGTAAAAT--AA-GTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATAC
gi|7 : ACTGAAATATG-TATATAG---AATAGTGATGGAGGCA-----------------TGTTTTTTTTTTTTTTCATTTTGTTT--------GTT-----TTTTTTTTGTTT------------TTT-------TTTTTTCTTATT----TTAATTAA---TATT----TGCATTGGAAGAG--GGGACACGAGTACGAG--------GATGT--GCCCCACTACA---TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTC------TTCACAACTT-CCCTTGAAGTTGACATAATAGATCCAACACT---TGTTATGAGGCT-GAT---CA-GTGTGGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTCA---------CCTTCCAC-CCAAAT-TAAATT-CCC-ACCTC--TGAAGCCCCT---AATCTA-TTACC-AACCGGTTT-----TATATATATAAGAAGCCCCTGAAAA-TGACTGTGGGTGGGTTGAGA-A-CATA-TATAGTA--GCA-----TAGACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAATTT--GA-CTGGATATAGCA-AGCTCCTTGTAAGCTCCTT------------GTGACTAACCCCT-------CCCTCTCCT-TTTTTCATT-ACAAAATAT-CTTCTGTCAGT----------AGATTCAGCAA-TCAT-CA-TGTCAAGCAAA-AGA---CCAATAT--CAATGTATGCAGA-CTT-ATGATGTT-AGACT-TTAACGA---ATTGG-AAACATGCTAAAATAAG-GCTGAATA---A-T-ACACAACCAAT-A-G-AGACCGA-TTTCTA-TACA-TG-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTT--TATGGGGTGGTGAATCCAGCACTACA-------GTTCTGTTGAC-TGGCT
gi|8 : ataaACTGAAATATG-TATATAG---AATAGTGATGGAGGCATGTTTTTTTTTTTTTTTCATTT------------GTT-TGTT---------TTTTTTTGTTTTTTTTTTTT------------GCT-------T--------ATT----TTAATTAA---TATT----TGCATTGGAAGAG--GGGACACGAGTACGAG--------GATGT--GCCCCACTACA---TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTC-----TATCACAACTT-CC-TTGAAGTTGACATAATAGATCCA-CACT---TGTTATGAGGCT-GAT---CA-GTGTGGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAA-CAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTCAC--C-------TTCCAC-CCAAAT-TAAATT-CCC-ACCTC-T-GAAGCCCCT--AA-TCTA-TTACC-AACGGT-TT-----TATATATATAAGAAGCCCCTG-AAAATGACTGTGGGTGG-TTGAG--AACATA-TATAGTA--GCA-----TAGACTAGAAAAGCGTATGTCTACTGCT------G-TTT-GAATTT--GA-CTGGATATAGCA-AGCTCC------------TTGTAAGCTCCTTGTGACTAACCCCC-------TCCCTCTCCTTTTTTCA-TTACA-AATAT-CTTCTGTCAGTA----------GAT-CAGCAAT-CAT-CAT-GTCAAGC-AA-AAGA--CCAATAT--CAATGTATGCAGAGCTT-ATGATGTT-AGACT-TTA---ACGAATTGGAAACA-TGCT-AAA-ATAAGCTGAATAA----T-ACACAACCAAT-A-G-AGACCGA-TTTCTA-TACA-TG-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTT--TATGGGGTGGTGAATCCAGCACTACA-------GTTCTGTTGAC-TGGCT
gi|6 : taaACTGA-----AATATGTAATAGAATAGTGATGGAGGCA-----------------TGTTT------------TTTTTTTTTTTTCATTTGTTT---GTTTTTTTTTGTTTTTTTTTTTTTTGCT-------T--------ATT----TTAATTAA---TATT----TGCATTGGAAGAG--GGGACACGAGTACGAG--------GATGT--GCCCCACTACA---TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTC-----TATCACAACTT-CCCTTGAAGTTGACATAATAGATCCAACACT---TGTTATGAGGCT-GAT---CAGGTG-GGTTAGTTGCTAAT-AGAGGT-------G-TTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACACCGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTCA---------CCTTCCAC-CCAAAT-TAAATT-CCC-ACCTC--TGAAGCCCCT---AATCTA-TTACCAA------CGGTTATTATATATATAAGAAGCCCCTGAAAA-TGACTGTGGGTGGGTTGAGA-A-CATATTATAGTA--GCA-----TAGACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAATTT--GA-CTGGATATAGCA-AGCTCCTTGTAAGCTCCTT------------GTGACTAACCCCCTCCCTCTCCT-------TTTTTCATT-ACAAAATAT-CTTCTGTCAGT----------AGATTCAGCAA-TCAT-CAT--TCAAGCAAA-AGA---CCAATAT--CAATGTATGCAGAGCTT-ATGATGTT-AGACT-TTAACGA---ATTGG-AAACATGCTAAAATAAG-GCTGAATA---A-T-ACACAACCAAT-AGG-AGACCGA-TTTCTA-TACA-TG-TTGTATAAATTCTTGTACCTGC-TGGATATCCAATGCATAAACAATTT--TATGGGGTGGTGAATCCAGCACTACA-------GTTCTGTTGAC-TGGCT
gi|3 : ataaTTGT-TT---------GTT----GTTTTTTTTTTTT------------GTGGGGGGGGT--------GTCAGGACTAATCT----TATTGTATTGAATTTGAAGAGAGGGGACCC-GA-----GTACTGTGAGGTGTT--CCTCACTACAT--TC-TAT-CACTGATG--CCAGTATCA-CAGGCTG-TC-----CGTCACAACTTTCCCTTGAAG--GAAATCATA------ACACT----GTTACGAGG-T-GAT---TA-G-ATGGT-AGCT-CTGGT-TGAGGT-------GTTTGAGAGCTAA-GAACATTC---AGC-ACACT--GTAGTCCACTTTATGACCACGAA-TTGTGGG-TCAAGCACTGCGGGCGGTA-TCTAA-TTGTTCATTCCATA-GTCTTCACCTCAAG---TTAATT-CCCT----CGTTGAAGCACCT--AA-TCTAATT--C-A------T------CATAT---TCAGAAGC--TTG-AAA-TGAGCGTGG-TGG-CTGAG--G-CATA-GA----A--AAAGCATATAAACTAGAAATGCATCTGTCCATT-CTAGTGAGGGTTT-AAGTCTTGACACTGG-T-TAGCATCGCTCT------------T------------GCAACTAACCCCC-------CCT-------TTTAT---T-ACAAAATCT-CTTCTGTCA-TACATTAGAAAAGAT----------GT-TAT----GAGC-AACAGA---ACA--AT--CAG-GT-TGCAGAGCTTAATGAT-TT-GGACT-TTAACGA---GTTGGACACATTGCT-AGATAAG-GCTGAATAGATA---AT-CAACTTACAA-A-AGACTGG-TACCC-GTACATTG-TGTAATGA--GCTTGTA-ATGCATGGATATCAGATGCAGCAAGGACGTGGGAGGGGGT-GTAGGACCAGCACTGAA-------AGTATGCTAGCTTGGCTC-GAG-GACCCT-GTTATAGCCTGGAGAGATTC---T-------GT-CCGTTTCCAGT-GAT--GGTC-AATG----GCCTGTGACATTATTTAGACTTCTTG-GCGGCTGC-CCGCAAAGCGTGTAG-------TGGGCTTCTGG-AATT-TC-TCTGTTCCTTAGTTTT-------GAGG----CATTTT--CTCGTGG-AA--G-----------
gi|5 : tgtaaactggcatagtgccccaatacctatcaatgctatggagaactctcccatattgtgttttttttgtttgtttgttgttgtTT---------GTT----TTTTTTTTT--TT------------GCT-------T--------ATT----TTAATTAA---TATT----TGCATTGGAAGAG--GGGACACGAGTACGAG--------GATGT--GCCCCACTACA---TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTC-----TATCACAACTT-CCCTTGAAGTTGACATAATAGATCCAACACT---TGTTATGAGGCT-GAT---CA-GTGTGGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTCAC--C------CTTCCAC-CCAAAT-TAAATT-CCC-ACCTC--TGAAGCCCCT---AATCTA-TTACC-AACGGT-TT-----TATATATATAAGAAGCCCCTGAAAA-TGACTGTGGGTGGGTTGAG--A-CATA-TATAGTA--GCA-----TAGACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAATTT--GA-CTGGATATAGCA-AGCTCCTTGTAAGCTCCTT------------GTGACTAACCCCCTCCCTCTCCT-------TTTTTCATT-ACAAAATAT-CTTCTGTCAGT----------AGATTCAGCAA-TCAT-CA-TGTCAAGCAAA-AGA---CCAATAT--CAATGTATGCAGAGCTT-ATGATGTT-AGACT-TTAACGA---ATTGG-AAACATGCTAAAATAAG-GCTGAATA---A-T-ACACAACCAAT-A-G-AGACCGA-TTTCTA-TACA-TG-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTT--TATGGGGTGGTGAATCCAGCACTACA-------GTTCTGTTGAC-TGGCTcatcacaccagaaaaaatgtgattaaattatt
gi|2 : ataaactgaaatatgtatatagaatagtgatggaggcatgtttttttttttttttcatttgtttgttttttttTTTTGGTTT-----------GTT-------T--------ATT----TTTATTTATAGTATT----TGCG--AGAAGAG--GGTACACGAG-----G--------GATGT--GCCTCACTACACAATCATATGT---------CCAGTATTAACAGGCTGATCTATCAACTCACAACTT-CTCCTGAAGTTGAAATGATAGATCCAACAAT---TGTTATGAGGCTTGAT---TA-GTGTGGTTAGCTGCTAATTAGAGGT-------GTT---GAGGTC-TAAACAC-C---AGCCACGCCTCGTAGTCCACTCT--GACCACGAATTGGTGGGGTCGA-CACTGCGG-GC-TAGTCTAAATTGTTCAT--CATAAGTCCTCCACCCAAA---TAACTTTCCCTACCTC-TTGAAACCCCCTAAAATATA-T-ACC-A------TG-----CATATAT-TAAGAAGCCCTTG-AAA-TGACTGTGGGTGGGCTGAG--G-CATACTATAGTA--AAA-----TGAACTAGAAAAGCGCATGTCTACTGCT------GGTTTTGAATAT--GC-CTGGATATAGCA-AGCTCC------------TT-----------GTAAC--ACCCCC-------CCC-------CTTTTCA---ATAAAAT---CTTCTGTCAAAAT--T-CAGA-GATTCATCAAT-----CATGG-AAAGC-AT-AG-----CAATATTGCA--GTATGC----CTT-GTGAT-TT-AGACTTTTA---A---ATTG-AGAACAT-CT-AAAT-TG-GCTGAATAATAA-C-ACAGAACCAAT-A-GGAGACCGACTTTCCAGTACA-TGCTGGTAAAAAAGCTTGTACCTGCTGTGATATCCAATGCATAAACGACTT--GAAGGGGTGGTAAATCCAGCACTACA-------GTTCTGTTGGC-TGGCTCTGAGTGACCCTGG---------GGAGA-ATTCAGGTCATTCTGATGCTGTCT--AGTGGAT--GGTCTGGTGTCGTG-GTGTG-CA--ATTTAGCCATCTTCGGTGACTGCG-C-TA---CCGGTA-------TTAGGCTTCTGG-AATTCTCATC-ATCTCTAAATTT---CTTGGGAGGCATGCATTTTTCCTCGTGG-AA--AGGAAAAGCAACAAACAATAATATGCA-TTAGATCTA--TT--------------------TTTTTCCCAT-----AGAGAGCAAGAGCGTG-AATTCTG--TGC-C-AATGACCAATT---GTCAATAAATCAT--AAGCACCT--AT-GCGCATATTTGCACACATT-CTAAAATTGTTGGTCATGACA----------TGC--------GGTATTTTT-AAT-AAACGAAATTTTC-AATCC---T--GCC-ATCGAAGGA-AAA-----ATTACATCAATATCTGA-GAA-AATTCG-CCAT--C----AATATGACC-CTATAA-CAA-TTAAAGT-AG-AT--TTTTAATCT--AT-ATTAGTGATAATAATA--A-AAA-GTTATT-C-T-TAT--TT-AC-AA-ATTCAA-TTAGT-G--CAC-ACCCC-A-CATA-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGACGAGAAATACCGAATA-C-ACCC
gi|10 : TTGAAGTTGAAATTCTACCTGTAGCGCTGATTGTCAGAAGAAT-TACATGTA-GTATGGTTAACTGTT-----GAGGTTGTGCTGGCTTG-GA---CATAGACAC-CTGCAGACGGAACTCGTAATCTACTTT-CGACCACGAAATAGTGAAGTCGA-CACTGCAG-AG-AAGTCTAAATTGC---T--TATAATTCTTCTACCCCAGATCTAAATT-ACA-ATATC-ATCATGCCCCC---AATCTA-CTGTC-G------AG-----AATGCATTTAAGAAGCTCTTG-AAA-TGACTGAAGGTGGACTGAAATG-TATA-TATAATGGCAAA-----C--ACTATAAAGG
gi|16 : caCCCCC-------CCC-------TTTTCAT-T-ACAAAATATTCTTCTGTCAGTAC----------ATTCAGCAAAAGATGTGTTGTCAAGC-AA-AATATCTCAATAT--CAATGTATGCAGAGCTT-ATGa
gi|4 : TTCTGTCAGTA----------GATTCAGCAATTCAT-CATTGACAAGC-AA-AAG---CCAATAT---AATGTATGCAGAGCTT-GTGAT-TTTAGACT-TTA---A---ATTGGAAAACATGCT-AAGTATG-GCTGAATAAATA-TTACACAACCAAT-A-G-AGACCGA-TTCCCAGTACA-TG-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTT--AAAGGGGTGGTAAATCCAGCACTAGTTCCACCAGTTCTGTTGGC-TGTCTCTGAGTGACCCT-G---------GGAGAGATTCA-GTCATTCTGG---TGTCT-CAGTGGAT-GGGTCTGGTG---TGCCTGTG-TACAATTTAGCCATCTTGGATGACTGTGGCTTA---CGTGTAG-------TAGGCTTCTG--AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG----CATTTT-CCTCGTGGAAA--G-----------AAACAATAATATGCA-TTAGA-ATAATT
gi|15 : AGAGCTT-GTGAT-TTTAGAC--TTT---A---ATTGGAAGACATGCT-AAATACG-GCTGAATAAATA-TTACACAACCAAT-A-G-AGGCCGA-TTCCCAGTACA-TG-CGGTATAAATGCTTGTACCTGatcaataaattcataagcacctaagccgtatttgccacattctaaaattgttggtcatggcgccctgagatgccatgctggtattttaatgaacgaattttcaacccatttgcatccgaaaggaaattaccacatatctgagaaaaattcgccacgcaatatacccttataacaattaaataatttttttaatctatattagtgataataatagaaagtggttcttatttacaaattcaattatgcacaccccacatgtattgaacctacttgtatccgatggatgggtgaaaaggaggaaaatccgaatacacccggcttttatagtgctatagccgcaggccgaacccgaccgaaatcaaacccgttttctcgtaaaataaagtcatcgattttatatgcataaaatagatgatat
gi|9 : GAATAAATAAT-ACACAACCAAT-A-G-AGAC-GA-TTCCCAGTACA-CG-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGTATAAACAACTT--GAAGGGGTGGTAAATCCAGCAGTACA-------GTTCTGTGGGC-TGGCTCTGAGTGACCC--T---------GGAGAGATTCA-GTCATTCTGGC-CTGTCT-CAGTGGAT-GGGTCTGGTG---TGCCTGTG-TACAATTTAGCCATCTTGGGTGACTGTTGCTTA---CGTGTAG-------TAGGCTTCTGG-AATT-CC-TC-ATCTCTAAATTT---CTTGGGAGG----CATTTT-CCTCGTGG-AAAGA-----------AAACAATAATATGCA-TTAGATCTAGTTTTTTTTTTCTTTCTTTCTTTCTTTTTTCCATATTAGAG--AGCGAGAGCGTG-AATTGTG------CCAATGACCAA-TTATC-A-ATAAATCAT--AAGTACCT-AAGCGCGT--ATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTATTTT--AATG-AACGA-ATTTTC-AATCCA--T--GCC-ATCGAAGGA-AAATTG-----C-ATC-ATATCTGA-GAAT-ATTCG-CCACG-C----AATA-GACCCTTATAA-CAATT--AATT-AG-ATT-TTTTAATCT--AT-ATTAGTGATAACAATAA
gi|4 : TTCATA--AGCACCT-AAG-CCGT--ATTTGC-CACATTC-TAAAATTGTTGGTCATGGCGCCCTGA-GAT-GCCAT--GCTGGTATTTT--AATGAA-CGA-ATTTTCAA-CCCATTTG---CATCCGAAAGG-AAAT---TACCA---C-ATATCTGA-GAAAAATTCG-CCACG-CAA----TA-TACCCTTAT-AACAA-TT-AAAT-A--ATTTTTTTAATCT--AT-ATTAGTGA---TAATAATAGAAA-GTGGTT-C-T-TA---TTTAC-AA-ATTC-AATTA-T-G--CAC-A-CCCCA-CATGT-ATTGAACCTACTTG-TAT-CCGA-TGGA--TGGG-TGAAAAGGAGGAAAA--TCCGAATA-C-ACCCGGC-TTT---TA-TAGTGCTA--TAG-CC--GCAGGC-CGAACCCG-ACCG---AAA-TCAAA--CCCG-TTTTC---TCGTAAAATA-AA-GTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATAa
gi|11 : ttctgtcagtagattcagcaattcatcattgacaagcaaaagccaatataatgtatgcagagcttgtgattttagactttaaattggaaaacatgctaagtatggctgaataaatattacacaaccaatagagaccgattcccagtacatgtggtataaatgcttgtacctgcttggatatccaatgcataaacgacttaaaggggtggtaaatccagcactagttccaccagttctgttggctgtctctgagtgaccctgggagagattcagtcattctggtgtctcagtggatgggtctggtgtgcctgtgtacaatttagccatcttggatgactgtggcttacgtgtagtaggcttctgaatttctcatttctaaatttcttgggaggcattttcctcgtggaaagaaacaataatatgcattagaataattatcaataaaAT-A-CAA-TTGAAATGAGA--TGTTTAAAT-CTAATCATTAGTGA-GTAAGTAATA-AAA-AGTATT-CTTATG---TT-AC-AAGATTC-AATTA-T-GGGCAC-A-CCC-A-AATGT-ATTCGACCTGATTGGTAT-CCGA-TGGAATTGGGGTGAAAAGGAGGAAAA--GACGAATA-CAACCCGGCGTTT---TA-TAGTGCTA--TAG-CGC-GCAGGC-CG-ACCCG-ACCG---AAA-TCAAAC-GCCGTTCTTC---TCGTAAAATAGAA-GTC-ATCGATTTTATATGCA-TGAAGA------T---AGATGATAt
gi|17 : GGATAATA-AAA-GTGATC---T-TA---TT-AACAA-ATTC-AGTTA-T-G--CAC-A-CCC-AACATGT-ATTGAACCTACTTG-TAT-------GGA--TGGG-TGAAAAGGAGGAAAA--t
gi|12 : tgTAATA-AAAAGTTATTCC---TA---TTCAC-AA-ATTC-AATTA-T-G--CAC-A-CCCCA-CATGT-ATTGAACCTACTTG-TAT-CTGA-TGGA--TGGG-TGAAAAGGAGGAAAA--TCCGAATA-C-ACCCGAC-TTT---TA-TAGTGCTA--CAA--CG-ACAGGC-CGAACCCG-ACCG---AAA-TCAAA--CCCG-TTTTC---TCGTAAAATA-AA-GTG-ATCGATTTTATATGCA-T-AAAATACATGT---AGATGATAtc
gi|14 : GT-TACATTT-AC-AA-ATTC-AATTA-T-G--CACTC-CCC-A-CATGT-ATTGAACCT---------------TGGA--TGGG-TGAAAAGGGGGAACA--TCCGAATA-C-ACCCGGC-TTT---TA-TAGTGCAA--CAG-CC--GCAGGC-CGAACCCG-ACCG---AAA-TCAAA--CCCG-TTTTC---TCGTAAAATA-AA-GTC-ATCGATTTTATATGCA-T-AGAA------T---AGATGATAttat
gi|13 : tactct-AA-ATTA-A-TTG-TTG--AGC-A-CCC-AGCATGT----AGACCTACTTG--A--CCGA-TGGA--TGCG-TGGAAAGGAGGCAAA--TCTGAATGTT-ACCCAGT-TTTATATAGTGCT--TAACCAGCCCGCGCAGGCTCGAACCCGACCCCA--AAAT--GGACACCCATTTTTCTCTTCGTAAAAA--AA-GTCAATCGATTTTATATGCATT-AAAA------TCAGAAATGAtt
gi|18 : tacaAG-CCG--CAGGC-CGAACCCGA-CCA---AAATAGAAAC-CCCCTTTTTC---TCGTAAAAT--AAAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATatatt
gi|19 : g-CCCGTTTT-C---TCGTAAAAT--AAAGTC-ATCGAATTTATATGCA-T-AAAA------T---AGATGATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 11 33333333333333333333333333333333333333333333333333333333 22222222 111 1111111 111 11 11111 1111111 4444444444 1 22 222 44444444444 111 1 3333333 4444444 111111 33333333 111 1 1 11 1 1111111 1 1111111 333333333 11 11 1 11 1111 2222222 111 11 22222 44444444444444 1 444444444444444444444444 44444 1 555555 333 1 11 1 2 1 1 1 111 1 11 11 111 1 333333 1 11 1 4444444444444 1 1 1 1 1 2222222 1 11 11 1 1 1 1 11111 11 111 1 111111
lowQualScore : 0 0 11 33 1 6 11111111111111111111111111111111111111111111111111111111 77 4 00000000 5 77 000 0 77 8888888 5 000 77 5 4 1 33 6 44444 5 0 1 5 3 5 5 6666666 0 5 888 3 4 5 0 5 5 5 5 2 8888888888 5 5 5 5 0 0 33 888 0 55555555555 5 6 3 3 666 0 66 5555555 5 5 77 1 0 4 8888888 444444 3 555 1 55555555 0 000 4 4 2 66 66 66 4 2 00 8 4 7 1 2 8888888 4 4 4 4 0 4 4 777 1 4444444 4 0 0 0 222222222 0 8 88 11 8 88 0 88 8 2 11 5 0000 4 8 6666666 8 8 8 8 444 0 11 00000 8 8 55555555555555 0 555555555555555555555555 88888 3 1 222222 777 1 44 0 33 0 0 3 3 0 2 3 0 0 2 444 0 33 88 111 0 555555 2 0 33 0 0000000000000 0 0 0 0 0 3333333 0 7 3 99 2 8 88888 11 88 11 5 6 6 6 1 66 0 5 5 5 66 5 0 0 5 5 0 33333 5 66 5 5 5 5 5 6 6 6 6 99 5 33 5 5 77 000 5 5 5 9 888 5 5 5 5 444444 888
lowQualScore : . . .. .. . . ........................................................ .. . ........ . .. ... . .. ....... . ... .. . . . .. . ..... . . . . . . . ....... . . ... . . . . . . . . . .......... . . . . . . .. ... . ........... . . . . ... . .. ....... . . .. . . . ....... ...... . ... . ........ . ... . . . .. .. .. . . .. . . . . . ....... . . . . . . . ... . ....... . . . . ......... . . .. .. . .. . .. . . .. . .... . . ....... . . . . ... . .. ..... . . .............. . ........................ ..... . . ...... ... . .. . .. . . . . . . . . . . ... . .. .. ... . ...... . . .. . ............. . . . . . ....... . . . .. . . ..... .. .. .. . . . . . .. . . . . .. . . . . . . ..... . .. . . . . . . . . . .. . .. . . .. ... . . . . ... . . . . ...... ...
lowQualScore : 8 8 00 66 0 7 55555555555555555555555555555555555555555555555555555555 99 3 77777777 7 99 000 1 99 6666666 0 000 99 7 3 4 66 6 33333 7 7 4 7 2 0 0 2222222 1 0 888 1 2 0 4 0 0 0 9 5 6666666666 0 0 0 0 4 0 88 555 1 88888888888 0 5 2 2 666 0 99 0000000 7 7 99 4 7 3 8888888 444444 2 222 1 33333333 1 111 4 4 8 11 11 11 0 2 66 2 4 3 0 6 9999999 0 0 0 0 0 0 0 111 0 4444444 4 8 8 8 000000000 8 0 88 88 0 00 8 88 0 8 00 0 8888 0 0 0000000 0 0 0 0 000 8 00 00000 0 0 44444444444444 0 000000000000000000000000 33333 3 0 333333 777 0 22 0 88 0 0 2 2 0 5 0 0 0 5 555 0 88 00 000 0 555555 5 0 88 0 2222222222222 0 0 0 0 0 8888888 0 0 2 00 2 0 88888 00 88 88 0 7 7 7 4 99 0 0 0 0 99 0 0 0 0 0 9 44444 0 99 0 0 0 7 7 7 7 7 7 22 7 66 7 7 99 000 7 7 0 4 888 0 0 0 0 444444 888
consensus : ACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTT-TTTTTTTTTC----GTTTGTTT-------GTT------------TT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAANTGTTCAT--CATA--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC--TGAAGCCCCT--AAATCTATTACCAA-C-GGTT--TCAT-ATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGCTGAGA-GCATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCC------TTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CATTGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTT-ATGATGTTAGACTTTAACGAATTGGAAAACA-TGCTAAAATAAGGCTGAATAAATA-T-ACACAACCAAT-A-G-AGACCGA-TTCCCAGTACA-TG-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTT--NANGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGGC-TGGCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCT-CAGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTG-CGGCNTA-CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGG-AA--G-----------AAACAATAATATGCA-TTAGATCTAGTTT------------------TCTTTTTCCCATG----AGAGAGCGAGAGCGTG-AATTCTG--TG--CCAATGACCAAT---TATCAATAAAT-CAT--AAGCACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAC--GCTGGTA-TTTT--AATGAAACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TACCAATC-ATATCTGA-G-AA-AATTCG-CCACG-C----AATA-GACCCTTATAACAATT-AAGT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAANAATAATAAAA-GTTATT-C-TTA-T--T-ACAA-ATTCAATTA-T-G--CAC-A-CCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--CAG-CCG-GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAACCCCGTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
Reference ( family-1261 ) : ACTGAAATATGTATATAG--AATAGTGATGGAGGCACGTTTNTT-TT------------GTTTGTTT-------GTT------------TT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTNTCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAAGTGTTCAT--CATA--TCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-TTGAAGCCCCT--AAATCTATTACCAA-C-G--T--NTAT-ATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGCTGAGA-GCATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCC-------CCC------TTTTTCATTACAAAATAT-CTTCTGTCAGT-------AAGATTCAGCAA-T-C-AT-CATTGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTT-ATGATGTTAGACTTTAACGAATTGGAAAACA-TGCTAAAATANGGCTGAATAAATA-T-ACACAACCAAT-A-G-AGACCGA-TTCCCAGTACA-TG-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTT--NANGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGGC-TGGCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCT-CAGTGGAT-GGGTCTGGTG-TGCCT-GTGCACA--ATTTAGCCATCTTGGGTGACTG-CGGCTTA-CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATCTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGG-AA--G-----------AAACAATAATATGCA-TTAGATCTAGTTTTTTTTTTCTTTCTTTCTTTCTTTTTCCCATATTAGAGAGAGCGAGAGCGTG-AATTNTG--TGC-CCAATGACCAATTTATNTNAATAAAT-CAT--AAGCACCT-AAG-GCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTA-TTTT--AATGAAACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TACCAATC-ATATCTGA-G-AA-AATTCG-CCACG-C----AATA-GACCCTTATAACAATTGAAAT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAANAATAATAAAA-GTTATT-C-TTA-T--T-ACAA-ATTCAATTA-T-G--CAC-A-CCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--CAG-CCG-GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAACCCCGTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
gi|1 : ACTGA-----GTATATAAGAAATAGTGATGGAGGC-CGATTATT-GT------------GTT-GTT--------GTT------------TT------------TTTTG--GTTGTTTAT--------T-TTA--ATT---T-TATT--TGCATTGGA-------AGAGGGGACAC-AG--------GGATGTTGGCCCCAC-ACACTCCTATGCACT-ATGGACCAGTATTAACAGGCTGGTCATTCA-----CAACTC-CCCTTGAAGTTGAAATGATAGATCCAACACTTGTTATGAGGCT-GATTAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAC-C---AGCCACACCTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTAAATTGTTCAT--CATAAGTCCTCCA-CTC-CAA---TAAATTCCCTACCTC-TTGAAGCCCCT--AAATCTATTACCA-------T--GCAT-ATATATAAGAAGCCCTTG-AAATGACTGTGGGTGGGCTGAG--GCATA-TATAGTAAAATG--AACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-CTGCC--TGGATATAGCAAGCTCC------------TGTAACTAACCCCC-------CCC------TTTTTCG-TACAGAATA--CTTCTGTCAGTACTACAGAAGATTCAGCAATT-C-AT-CATTGTCAAGC-AA--AGGCC--AATAT--CAATGTATGCAGAGCTT-GTGAT-TTAAA--TTA---AATTGGAAAAAA-TGCT-AAATATGGCTGAATAAATA-T-ATACAACCAAT-A-G-AGACCGA-TTCCCAGTACA-TG-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTT--GAAGGGGTGGTAAATCCAGCACTA-------CTGTTCTGTTGGC-TGGCTCTGAGTGACCC-G---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCT-CAGTGGATGGGGTCTGGTGATGCCT-GTGTAAC--ATTTAGCCATCTTGTGTGACTG-TGACGTA-CGTGTAGTACTAGTTAGGCTTCTGGTAATT-TC-TC-ACTCCTAAATTTTGCTTTGGGAGGCTCA-----TTTTACCTCGTGG-AA--G-----------AAACAATAATTTGCAGTTAGATCTAATTT--------------------TTTTCCCCATGGGAGAGAAAGCGAGTGCGTGAAATTCTGTATGCACAAATGACCCATTTACCTC-ATATTT-CATACAAGCACCTCAAG-GCG-ATTTGCACACATTCCTAAAATTGTTGGTCATGGCGCCCGGACGATTGCCACTGGCTGGTA-TTTTTAAATGAAACG-ACATTTTCAAATCCAGGTGGGCCAATC--GAAGGATAAATGGA--TATTAATC-ATATCTGACG-AACAATTCGTCCACGACAAAAAATA-GACCTCTAT-ACAAT--AAGT-AGAATTATTTTAAT-TA--TATTAGTGA--AAGAATAATAAAA-GTTATTGCGTTA-T--T-AGAA-ATTC-ATCA-T-G--CAC-A-CCC-A-CATGTTATTGAACCTGCTTG-TATTCCGAATGGA--TGGG-TGAAAAGGAGGA-AAAA-CCGAATA-CA-CCCGGC-TTT-TAGTACTGC-TA--TAG-CCG-GCAGGC-CGAACCTGAA--CCGGATAAATTC-AAACCCCGTTTTTC---TCGTAAAAT--AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
gi|10 : AGTAT-GGTTAACTGTT-----GAGGTTGTGCTGGCTTG-GA---CATAGACAC-CTGCAGACGGAACTCGTAATCTACTTT-CGACCACGAAATAGTGAAGTCGA-CACTGCAG-AG-AAGTCTAAATTGCTTAT--AAT---TCTTCTACC-C-CAGATCTAAATTACA-ATATC-ATCATGCCCCC---AATCTACTGTCGA---------GAAT-GCATTTAAGAAGCTCTTG-AAATGACTGAAGGTGGACTGAAATGTATA-TATAATGGCAAA--CACTATAAAGGc
gi|11 : cattgaagttgaaattctacctgtagcgctgattgtcagaagaattacatgtACAATTGAAATGAG-ATG-TTTAAATCTAATCATTAGTGAGTAAG--TAATAAAA-AGTATT-C-TTA-TGTT-ACAAGATTCAATTA-T-GGGCAC-A-CCC-A-AATG-TATTCGACCTGATTGGTA-TCCG-ATGGAATTGGGGTGAAAAGGAGGA-AAAG-ACGAATA-CAACCCGGCGTTT-TA-TAGTGC-TA--TAG-CGC-GCAGGC-CG-ACCCG-A--CCG---AAA-TC-AAACGCCGTTCTTC---TCGTAAAATAGAAGTC-ATCGATTTTATATGCA-TGAAGA------T---AGATGATAa
gi|12 : atTAATAAAAAGTTATT-C-CTA-T--TCACAA-ATTCAATTA-T-G--CAC-A-CCCCA-CATG-TATTGAACCTACTTG-TA-TCTG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGAC-TTT-TA-TAGTGC-TA--CAA--CG-ACAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTG-ATCGATTTTATATGCA-T-AAAATACATGT---AGATGATAt
gi|13 : --T-ACAA-AATTAATTG-TTG--AGC-A-CCC-AGCATG-TA---GACCTACTTG--A--CCG-ATGGA--TGCG-TGGAAAGGAGGC-AAAT-CTGAATGTTA-CCCAGT-TTTATA-TAGTGCTTAACCAGCCCGCGCAGGCTCGAACCCG-ACCCCA---AAA-TG-GACACCCATTTTTCTCTTCGTAAAA-A-AAGTCAATCGATTTTATATGCATT-AAAA------TCAGAAATGAttat
gi|14 : -T--T-ACAA-ATTCAATTA-T-G--CACTC-CCC-A-CATG-TATTGAACCT---------------TGGA--TGGG-TGAAAAGGGGGA-ACAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-AA--CAG-CC--GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AGAA------T---AGATGATAatatt
gi|15 : tactctgttacatAGAGCTT-GTGATTTTAGACTTTAA----TTGGAAGACA-TGCTAAA-TACGGCTGAATAAATA-TTACACAACCAAT-A-G-AGGCCGA-TTCCCAGTACA-TG-CGGTATAAATGCTTGTACCTGtt
gi|16 : CCCC-------CCC------CTTTTCATTACAAAATATTCTTCTGTCAGT-------AC-ATTCAGCAA-A-AGATGTGTTGTCAAGCAAA--ATATCTCAATAT--CAATGTATGCAGAGCTT-ATG
gi|17 : ATAATAAAA-GTGA-T-C-TTA-T--TAACAA-ATTCAGTTA-T-G--CAC-A-CCCAA-CATG-TATTGAACCTACTTG-T-------ATGGA--TGGG-TGAAAAGGAGGA-AAAT-C
gi|18 : tgggAG-CCG--CAGGC-CGAACCCG-A--CCA---AAA-TAGAAACCCCCTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGAT
gi|19 : gCCCGTTTT-C---TCGTAAAATA-AAGTC-ATCGAATTTATATGCA-T-AAAA------T---AGATGATA
gi|2 : TTTTGGTTTGTTTAT--------T-TTT--ATTTATAGTATT--TGCG--AGA-------AGAGGGTACACGAG--------GGATGT--GCCTCACTACA---CAAT-CA--TATGT-CCAGTATTAACAGGCTGATCTATCAACTCACAACTT-CTCCTGAAGTTGAAATGATAGATCCAACAATTGTTATGAGGCTTGATTAGTGT-GGTTAGCTGCTAATTAGAGGT-------GTT---GAGGTC-TAAACAC-C---AGCCACGCCTCGTAGTCCACTCT--GACCACGAATTGGTGGGGTCGA-CACTGCGG-GC-TAGTCTAAATTGTTCAT--CATAAGTCCTCCA-C-C-CAAAT-AACTTTCCCTACCTC-TTGAAACCCCCTAAAATATAT-ACCA-------T--GCAT-ATAT-TAAGAAGCCCTTGAAA-TGACTGTGGGTGGGCTGAG--GCATACTATAGTAAAATG--AACTAGAAAAGCGCATGTCTACTGCT------GGTTTTGAAT-ATGCC--TGGATATAGCAAGCTCCTTGTAA-----------C--ACCCCC-------CCC------CTTTTCA--ATAAAAT---CTTCTGTCA----------AAATTCAGAGA-TTC-AT-CA--ATCATGGAAAGCATAGC--AATATTGCA--GTATGC----CTT-GTGAT-TTAGACTTTTA--AATTG-AGAACA-T-CTAAATT--GGCTGAATAATAA-C-ACAGAACCAAT-A-GGAGACCGACTTTCCAGTACA-TGCTGGTAAAAAAGCTTGTACCTGCTGTGATATCCAATGCATAAACGACTT--GAAGGGGTGGTAAATCCAGCACTA-------CAGTTCTGTTGGC-TGGCTCTGAGTGACCCTG---------GG-GAGAATTCAGGTCATTCTGATGCTGTCT--AGTGGAT--GGTCTGGTG-T-CGTGGTGTGCA--ATTTAGCCATCTTCGGTGACTG-CG--CTA-CCGGTAT-------TAGGCTTCTGG-AATTCTCATC-ATCTCTAAATTT---CTTGGGAGG--CATGCATTTTT-CCTCGTGG-AA--AGGAAAAGCAACAAACAATAATATGCA-TTAGATCTA----------------------TTTTTTTCCCAT-----AGAGAGCAAGAGCGTG-AATTCTG--TG--CCAATGACCAAT---TGTCAATAAAT-CAT--AAGCACCT-ATGCGCATATTTGCACACATT-CTAAAATTGTTGGTCATGAC---------A-TGC--------GGTATTTTT--AAT-AAACGAA-ATTTTC-AATCC---T--GCC-ATC--GAAGGA-AA----AATTAC--ATCAATATCTGA-G-AA-AATTCG-CCAT--C----AATATGACCC-TATAACAATTAAAGT-AG-A-T-TTTTAATCTA--TATTAGTGA-TAATAATA--AAAA-GTTATT-C-TTATT--T-ACAA-ATTCAATTAGT-G--CAC-ACCCC-A-CATA-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGACGAGAAATACCGAATA-CA-CCCtt
gi|3 : GTTTGTTGTT------------GTTTGTTT-------GTT------------GT------------TTTTT--TTT-TTTGTGGGGGGGGTGTCAGGACT---AATCTTATTGTATTGAATTTGAAGAGAGGGGACCCGAGTACTGTGAGG-TGT--TCCTCACTACA-TTCTAT-CACTGATG--CCAGTATCA-CAGGCTG-TCCGTCA-----CAACTTTCCCTTGAAG--GAAATCATA------ACACT-GTTACGAGG-T-GATTAG-AT-GGT-AGCT-CTGGT-TGAGGT-------GTTTGAGAGCTAA-GAACATTC---AGC-ACA-CT-GTAGTCCACTTTATGACCACGAA-TTGTGGG-TCAAGCACTGCGGGCGGTA-TCT-AATTGTTCATTCCATAG-TCTTC-A-C-CTCAAGT-TAA-TTCCC----TCGTTGAAGCACCT--AA-TCTA----------A--T--TCATCATAT-TCAGAAGCT--TGAAA-TGAGCGTGG-TGG-CTGAG--GCATA-GAAAA-AGCATATAAACTAGAAATGCATCTGTCCATT-CTAGTGAGGGTTT-AAGTCTTGACACTGG-T-TAGCA---TC-------GCTC-TTGCAACTAACCCCC-------CCT------TTT---ATTACAAAATCT-CTTCTGTCA-T--------ACATT-AGAAA-A-G-AT--GTTAT-GAGCAAC--AGAAC--A--AT--CAG-GT-TGCAGAGCTTAATGAT-TTGGACTTTAACGAGTTGG-ACACATTGCT-AGATAAGGCTGAATAGATA---AT-CAACTTACAA-A-AGACTGG-TACCC-GTACATTG-TGTAATGA--GCTTGTA-ATGCATGGATATCAGATGCAGCAAGGACGTGGGAGGGGGTGTAGGA-CCAGCACTG-------AAAGTATGCTAGCTTGGCTC-GAG-GACCCTGTTATAGCCTGGAGAG-ATTC---T-------GT-CCGTTTCCAGT-GAT--GGTC-AATG--GCCT-GTG-ACATTATTTAGACTTCTT-GGCGGCTGCCCGCAAAGCGTGTAG-------TGGGCTTCTGG-AATT-TC-TCTGTTCCTTAGTTT---T----GAGG--CA-----TTTT--CTCGTGG-AA--G-----------
gi|4 : tgtaaactggcatagtgccccaatacctatcaatgctatggagaactctcccatattgtgttttttttgtttTTCTGTCAGT-------A-GATTCAGCAA-TTC-AT-CATTGACAAGCAAA--AG-CC--AATAT---AATGTATGCAGAGCTT-GTGATTTTAGACTTTAA---ATTGGAAAACA-TGCT-AAGTATGGCTGAATAAATATT-ACACAACCAAT-A-G-AGACCGA-TTCCCAGTACA-TG-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTT--AAAGGGGTGGTAAATCCAGCACTAGTTCCACCAGTTCTGTTGGC-TGTCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGG---TGTCT-CAGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGATGACTG-TGGCTTA-CGTGTAG-------TAGGCTTCT-G-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAA--G-----------AAACAATAATATGCA-TTAGAcatcacaccagaaaaaatgtgattaaattatt
gi|4 : TATCAATAAATTCAT--AAGCACCT-AAG-CCGTATTTGC-CACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTA-TTTT--AATG-AACG-A-ATTTTC-AACCCATTT--G-C-ATCCGAAAGGA-AA----T--TACCA--C-ATATCTGA-GAAA-AATTCG-CCACG-C----AATA-TACCCTTATAACAATT-AAAT-AA-TTT-TTTTAATCTA--TATTAGTGA-TAATAATA--GAAA-GTGGTT-C-TTATT--T-ACAA-ATTCAATTA-T-G--CAC-ACCCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--TAG-CC--GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATAataattatcaataaattcataagcacctaagccgtatttgccacattctaaaattgttggtcatggcgccctgagatgccatgctggtattttaatgaacgaattttcaacccatttgcatccgaaaggaaattaccacatatctgagaaaaattcgccacgcaatatacccttataacaattaaataatttttttaatctatattagtgataataatagaaagtggttcttatttacaaattcaattatgcacaccccacatgtattgaacctacttgtatccgatggatgggtgaaaaggaggaaaatccgaatacacccggcttttatagtgctatagccgcaggccgaacccgaccgaaatcaaacccgttttctcgtaaaataaagtcatcgattttatatgcataaaatagatgatat
gi|5 : ttctgtcagtagattcagcaattcatcattgacaagcaaaagccaatataatgtatgcagagcttgtgattttagactttaaattggaaaacatgctaagtatggctgaataaatattacacaaccaatagagaccgattcccagtacatgtggtataaatgcttgtacctgcttggatatccaatgcataaacgacttaaaggggtggtaaatccagcactagttccaccagttctgttggctgtctctgagtgaccctgggagagattcagtcattctggtgtctcagtggatgggtctggtgtgcctgtgtacaatttagccatcttggatgactgtggcttacgtgtagtaggcttctgaatttctcatttctaaatttcttgggaggcattttcctcgtggaaagaaacaataatatgcattagaataatACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTT-TTTTTTTTTC----ATTTGTTT-------GTT------------TTTTTTTTGTTTTTTTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTCAC--C------CTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC--TGAAGCCCCT---AATCTATTACCAA-C-GGTT--TTAT-ATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA--CATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCT------TTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTT-ATGATGTTAGACTTTAACGAATTGG-AAACA-TGCTAAAATAAGGCTGAATA---A-T-ACACAACCAAT-A-G-AGACCGA-TTTCTA-TACA-TG-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTT--TATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGAC-TGGCTt
gi|6 : ataaACTGAAATATGTA-ATAG--AATAGTGATGGAGGCATGTTTTTT-TTTTTTTTTC----ATTTGTTT-------GTTTTTTTTTGTTTTTT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAG-GTGGGTTAGTTGCTAAT-AGAGGT-------G-TTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACACCGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC-------A--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC--TGAAGCCCCT---AATCTATTACCAA-CGG--TTATTAT-ATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA-ACATATTATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCT------TTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CAT--TCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTT-ATGATGTTAGACTTTAACGAATTGG-AAACA-TGCTAAAATAAGGCTGAATA---A-T-ACACAACCAAT-AGG-AGACCGA-TTTCTA-TACA-TG-TTGTATAAATTCTTGTACCTGC-TGGATATCCAATGCATAAACAATTT--TATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGAC-TGGCT
gi|7 : ataaACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTT-TTTTTTTTCATTTTGTTTGTTTTTTTTTTGTT------------TT------------TTTTT--TTT-CTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCT-TCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC-------A--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC--TGAAGCCCCT---AATCTATTACCAACC-GGTT--TTAT-ATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA-ACATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCT-------CCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGA-CTT-ATGATGTTAGACTTTAACGAATTGG-AAACA-TGCTAAAATAAGGCTGAATA---A-T-ACACAACCAAT-A-G-AGACCGA-TTTCTA-TACA-TG-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTT--TATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGAC-TGGCT
gi|8 : ataaACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTT-TTTTTTTTTCATTTGTTTGTTTTTTTTT-GTT------------TT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT--CCTTGAAGTTGACATAATAGATCC-ACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCAT-AACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC-------A--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC--TGAAGCCCCT---AATCTATTACCAA-C-GGTT--TTAT-ATATATAAGAAGCCCCTGAAAATGACTGTGGGT-GGTTGAGA-ACATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCT------TTTTTCATTAC-AAATAT-CTTCTGTCAGT--------AGA-TCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTT-ATGATGTTAGACTTTAACGAATTGG-AAACA-TGCTAAAATAA-GCTGAATA---A-T-ACACAACCAAT-A-G-AGACCGA-TTTCTA-TACA-TG-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTT--TATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGAC-TGGCT
gi|9 : taaGAATAAATAAT-ACACAACCAAT-A-G-AGAC-GA-TTCCCAGTACA-CG-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGTATAAACAACTT--GAAGGGGTGGTAAATCCAGCAGTA-------CAGTTCTGTGGGC-TGGCTCTGAGTGACCCTG---------G-AGAG-ATTCA-GTCATTCTGGC-CTGTCT-CAGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTG-TTGCTTA-CGTGTAG-------TAGGCTTCTGG-AATT-CC-TC-ATCTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGG-AAAGA-----------AAACAATAATATGCA-TTAGATCTAGTTTTTTTTTTCTTTCTTTCTTTCTTTTTTCCATATT--AGAGAGCGAGAGCGTG-AATTGTG------CCAATGACCAAT---TATCAATAAAT-CAT--AAGTACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTA-TTTT--AATG-AACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TTGC-ATC-ATATCTGA-G-AA-TATTCG-CCACG-C----AATA-GACCCTTATAACAATT-AATT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAACAATAA
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 11 2222 7777777777777777777777777777777777 22222222 111 1111111 111 11 11111 1111111 4444444444 1 1 222 3333333333 111 1 3333333 11111111 111 1 1 11 1 1111111 1 1111111 333333333 111 11 11 2222222 111 11 22222 44444444444 1 222222222222222222222222 333 2222 1 11 111 1 1 1 11 1 1 1 1 111 1 11 111 1 333333 11 11 1 4444444444444 1 1 1 1 1 2222222 1 1 11 1 1 1 1 11111 11 111 1 111111
lowQualScore : 0 0 11 0 6 6 8888 6 7777777777777777777777777777777777 77 4 00000000 5 77 000 0 77 8888888 5 000 77 5 4 1 33 3 44444 5 0 1 5 3 5 5 6666666 0 5 888 3 4 5 0 5 5 5 5 1 6666666666 5 5 5 5 0 0 0 5 888 5 0000000000 3 3 3 666 0 66 5555555 5 5 77 1 0 4 7 44 1 3 555 1 66666666 000 4 4 2 66 66 66 4 2 00 2 4 1 6 2 8888888 4 4 4 4 0 4 4 777 1 4444444 4 0 0 0 222222222 0 8 88 555 8 8 0 88 8 0 11 3 11 1 8 6666666 8 8 8 8 444 0 11 00000 8 8 99999999999 0 666666666666666666666666 000 8888 3 7 88 666 0 0 0 33 0 55 3 3 0 2 3 0 0 2 888 0 33 55 3 111 0 555555 22 33 0 0000000000000 0 0 0 0 0 3333333 0 7 3 0 6 1 8 88888 11 88 11 5 6 6 6 1 66 0 5 5 5 66 5 0 0 5 5 0 33333 5 66 5 5 5 5 5 6 6 6 6 99 5 33 5 5 77 000 5 5 5 9 888 5 5 5 5 444444 888
lowQualScore : . . .. . . . .... . .................................. .. . ........ . .. ... . .. ....... . ... .. . . . .. . ..... . . . . . . . ....... . . ... . . . . . . . . . .......... . . . . . . . . ... . .......... . . . ... . .. ....... . . .. . . . . .. . . ... . ........ ... . . . .. .. .. . . .. . . . . . ....... . . . . . . . ... . ....... . . . . ......... . . .. ... . . . .. . . .. . .. . . ....... . . . . ... . .. ..... . . ........... . ........................ ... .... . . .. ... . . . .. . .. . . . . . . . . ... . .. .. . ... . ...... .. .. . ............. . . . . . ....... . . . . . . . ..... .. .. .. . . . . . .. . . . . .. . . . . . . ..... . .. . . . . . . . . . .. . .. . . .. ... . . . . ... . . . . ...... ...
lowQualScore : 8 8 00 8 7 7 3333 7 2222222222222222222222222222222222 99 3 77777777 7 99 000 1 99 6666666 0 000 99 7 3 4 66 9 33333 7 7 4 7 2 0 0 2222222 1 0 888 1 2 0 4 0 0 0 9 0 8888888888 0 0 0 0 4 0 0 0 555 0 0000000000 4 2 2 666 0 99 0000000 7 7 99 4 7 3 1 44 1 2 222 1 11111111 111 4 4 8 11 11 11 0 2 66 8 4 9 4 1 9999999 0 0 0 0 0 0 0 111 0 4444444 4 8 8 8 000000000 8 0 88 000 0 0 8 88 0 8 00 2 22 0 0 0000000 0 0 0 0 000 8 00 00000 0 0 00000000000 0 777777777777777777777777 333 3333 3 3 33 777 0 0 0 88 0 00 2 2 0 5 0 0 0 5 000 0 88 88 2 000 0 555555 55 88 0 2222222222222 0 0 0 0 0 8888888 0 0 2 8 0 4 0 88888 00 88 88 0 7 7 7 4 99 0 0 0 0 99 0 0 0 0 0 9 44444 0 99 0 0 0 7 7 7 7 7 7 22 7 66 7 7 99 000 7 7 0 4 888 0 0 0 0 444444 888
consensus : ACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCGT-TTGTTT-------G----------TTTT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAANTGTTCAT--CATA--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT--AAATCTA-TTACCAA-CGGTT-TCATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGCTGAGA-GCATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCCTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CATTGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGGAAAACAT-GCTAAAATAAGGCTGAATAAATA-T-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTN--ANGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGCG-GCNTA-CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGG-AAGG----------AAACAATAATATGCA-TTAGATCTAGTTTT------C------------TTTTTCCCATG--AGAG----AGCGAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGCACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAC--GCTGGTA-TTTT--AATGAAACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TACCAATC-ATATCTGA-GAA-AA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AAGT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAANAATAATAAAA-GTTATT-C-TTA-T--T-ACAA-ATTCAATTA-T-G--CAC-A-CCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--CAG-CCG-GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAACCCCGTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
Reference ( family-1261 ) : ACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCGT-TTGTTT-------G----------TTTT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAANTGTTCAT--CATA--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT--AAATCTA-TTACCAA-CGGTT-TCATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGCTGAGA-GCATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCCTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CATTGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGGAAAACAT-GCTAAAATAAGGCTGAATAAATA-T-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTN--ANGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGCG-GCNTA-CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGG-AAG-----------AAACAATAATATGCA-TTAGATCTAGTTTT------C------------TTTTTCCCATG--AGAG----AGCGAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGCACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAC--GCTGGTA-TTTT--AATGAAACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TACCAATC-ATATCTGA-GAA-AA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AAGT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAANAATAATAAAA-GTTATT-C-TTA-T--T-ACAA-ATTCAATTA-T-G--CAC-A-CCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--CAG-CCG-GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAACCCCGTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
gi|1 : ACTGA-----GTATATAAGAAATAGTGATGGAGGC-CGATTATT----------------GTGTTGTT--------G----------TTTT------------TTTTG--GTTGTTTAT--------T-TTA--ATT---T-TATT--TGCATTGGA-------AGAGGGGACAC-AG--------GGATGTTGGCCCCAC-ACACTCCTATGCACT-ATGGACCAGTATTAACAGGCTGGTCATTCA-----CAACTC-CCCTTGAAGTTGAAATGATAGATCCAACACTTGTTATGAGGCT-GATTAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAC-C---AGCCACACCTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTAAATTGTTCAT--CATAAGTCCTCCA-CTC-CAA---TAAATTCCCTACCTCTT-GAAGCCCCT--AAATCTA-TTACCA------T-GCATATATATAAGAAGCCCTTG-AAATGACTGTGGGTGGGCTGAG--GCATA-TATAGTAAAATG--AACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-CTGCC--TGGATATAGCAAGCTCC------------TGTAACTAACCCCC-------CCCTTTTTCG-TACAGAATA--CTTCTGTCAGTACTACAGAAGATTCAGCAATT-C-AT-CATTGTCAAGC-AA--AGGCC--AATAT--CAATGTATGCAGAGCTTG-TGAT-TTAAA--TTA---AATTGGAAAAAAT-GCT-AAATATGGCTGAATAAATA-T-ATACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTG--AAGGGGTGGTAAATCCAGCACTA-------CTGTTCTGTTGGCT-GGCTCTGAGTGACCC-G---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCTC-AGTGGATGGGGTCTGGTGATGCCT-GTGTAAC--ATTTAGCCATCTTGTGTGACTGTG-ACGTA-CGTGTAGTACTAGTTAGGCTTCTGGTAATT-TC-TC-ACTCCTAAATTTTGCTTTGGGAGGCTCA-----TTTTACCTCGTGG-AAG-----------AAACAATAATTTGCAGTTAGATCTAATTT--------------------TTTTCCCCATG--GGAGAGAAAGCGAGTGCGTGAAATTCTGTATGCACAAATGACCCATTTACCTCATATTT-CATACAAGCACCTCAAG-GCG-ATTTGCACACATTCCTAAAATTGTTGGTCATGGCGCCCGGACGATTGCCACTGGCTGGTA-TTTTTAAATGAAACG-ACATTTTCAAATCCAGGTGGGCCAATC--GAAGGATAAATGGA--TATTAATC-ATATCTGACGAACAA-TTCGTCCACGACAAAAAATA-GACCTCTAT-ACAA-T-AAGT-AGAATTATTTTAAT-TA--TATTAGTGA--AAGAATAATAAAA-GTTATTGCGTTA-T--T-AGAA-ATTC-ATCA-T-G--CAC-A-CCC-A-CATGTTATTGAACCTGCTTG-TATTCCGAATGGA--TGGG-TGAAAAGGAGGA-AAAA-CCGAATA-CA-CCCGGC-TTT-TAGTACTGC-TA--TAG-CCG-GCAGGC-CGAACCTGAA--CCGGATAAATTC-AAACCCCGTTTTTC---TCGTAAAAT--AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
gi|10 : AGTAT-GGTTAACTGTT-----GAGGTTGTGCTGGCTTG-GA---CATAGACAC-CTGCAGACGGAACTCGTAATCTACTTT-CGACCACGAAATAGTGAAGTCGA-CACTGCAG-AG-AAGTCTAAATTGCTTAT--AAT---TCTTCTACC-C-CAGATCTAAATTACA-ATATCAT-CATGCCCCC---AATCTA-CTGTCGA--GA-----ATGCATTTAAGAAGCTCTTG-AAATGACTGAAGGTGGACTGAAATGTATA-TATAATGGCAAA--CACTATAAAGGc
gi|11 : cattgaagttgaaattctacctgtagcgctgattgtcagaagaattacatgtACAATTGAAATGAG-ATG-TTTAAATCTAATCATTAGTGAGTAAG--TAATAAAA-AGTATT-C-TTA-TGTT-ACAAGATTCAATTA-T-GGGCAC-A-CCC-A-AATG-TATTCGACCTGATTGGTA-TCCG-ATGGAATTGGGGTGAAAAGGAGGA-AAAG-ACGAATA-CAACCCGGCGTTT-TA-TAGTGC-TA--TAG-CGC-GCAGGC-CG-ACCCG-A--CCG---AAA-TC-AAACGCCGTTCTTC---TCGTAAAATAGAAGTC-ATCGATTTTATATGCA-TGAAGA------T---AGATGATAa
gi|12 : atTAATAAAAAGTTATT-C-CTA-T--TCACAA-ATTCAATTA-T-G--CAC-A-CCCCA-CATG-TATTGAACCTACTTG-TA-TCTG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGAC-TTT-TA-TAGTGC-TA--CAA--CG-ACAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTG-ATCGATTTTATATGCA-T-AAAATACATGT---AGATGATAt
gi|13 : --T-ACAA-AATTAATTG-TTG--AGC-A-CCC-AGCATG-TA---GACCTACTTG--A--CCG-ATGGA--TGCG-TGGAAAGGAGGC-AAAT-CTGAATGTTA-CCCAGT-TTTATA-TAGTGCTTAACCAGCCCGCGCAGGCTCGAACCCG-ACCCCA---AAA-TG-GACACCCATTTTTCTCTTCGTAAAA-A-AAGTCAATCGATTTTATATGCATT-AAAA------TCAGAAATGAttat
gi|14 : -T--T-ACAA-ATTCAATTA-T-G--CACTC-CCC-A-CATG-TATTGAACCT---------------TGGA--TGGG-TGAAAAGGGGGA-ACAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-AA--CAG-CC--GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AGAA------T---AGATGATAatatt
gi|15 : tactctgttacatAGAGCTTG-TGATTTTAGACTTTAA----TTGGAAGACAT-GCTAAA-TACGGCTGAATAAATA-TTACACAACCAATA-G-A-GGCCGA-TTCCCAGTACAT-G-CGGTATAAATGCTTGTACCTGtt
gi|16 : CCCCCCCCTTTTCATTACAAAATATTCTTCTGTCAGT--------ACATTCAGCAA-A-AGATGTGTTGTCAAGCAAA--ATATCTCAATAT--CAATGTATGCAGAGCTTA-TG
gi|17 : ATAATAAAA-GTGA-T-C-TTA-T--TAACAA-ATTCAGTTA-T-G--CAC-A-CCCAA-CATG-TATTGAACCTACTTG-T-------ATGGA--TGGG-TGAAAAGGAGGA-AAAT-C
gi|18 : tgggAG-CCG--CAGGC-CGAACCCG-A--CCA---AAA-TAGAAACCCCCTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGAT
gi|19 : gCCCGTTTT-C---TCGTAAAATA-AAGTC-ATCGAATTTATATGCA-T-AAAA------T---AGATGATA
gi|2 : TTTTGGTTTGTTTAT--------T-TTT--ATTTATAGTATT--TGCG--AGA-------AGAGGGTACACGAG--------GGATGT--GCCTCACTACA---CAAT-CA--TATGT-CCAGTATTAACAGGCTGATCTATCAACTCACAACTT-CTCCTGAAGTTGAAATGATAGATCCAACAATTGTTATGAGGCTTGATTAGTGT-GGTTAGCTGCTAATTAGAGGT-------GTT---GAGGTC-TAAACAC-C---AGCCACGCCTCGTAGTCCACTCT--GACCACGAATTGGTGGGGTCGA-CACTGCGG-GC-TAGTCTAAATTGTTCAT--CATAAGTCCTCCA-C-C-CAAAT-AACTTTCCCTACCTC-TTGAAACCCCCTAAAATATA-T-ACCA------T-GCATATAT-TAAGAAGCCCTTGAAA-TGACTGTGGGTGGGCTGAG--GCATACTATAGTAAAATG--AACTAGAAAAGCGCATGTCTACTGCT------GGTTTTGAAT-ATGCC--TGGATATAGCAAGCTCCTTGTAA-----------C--ACCCCCCCCCT-------TTTCA--ATAAAAT---CTTCTGTCA----------AAATTCAGAGA-TTC-AT-CA--ATCATGGAAAGCATAGC--AATATTGCA--GTATGC----CTTG-TGAT-TTAGACTTTTA--AATTG-AGAACAT--CTAAATT--GGCTGAATAATAA-C-ACAGAACCAATA-GGA-GACCGACTTTCCAGTACAT-GCTGGTAAAAAAGCTTGTACCTGCTGTGATATCCAATGCATAAACGACTTG--AAGGGGTGGTAAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GG-GAGAATTCAGGTCATTCTGATGCTGTCT--AGTGGAT--GGTCTGGTG-T-CGTGGTGTGCA--ATTTAGCCATCTTCGGTGACTGCG---CTA-CCGGTAT-------TAGGCTTCTGG-AATTCTCATC-ATCTCTAAATTT---CTTGGGAGG--CATGCATTTTT-CCTCGTGG-AAAGGAAAAGCAACAAACAATAATATGCA-TTAGATCTA----T------T------------TTTTTCCCAT---AGAG----AGCAAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTGTC-AATAAAT-CAT--AAGCACCT-ATGCGCATATTTGCACACATT-CTAAAATTGTTGGTCATGAC---------A-TGC--------GGTATTTTT--AAT-AAACGAA-ATTTTC-AATCC---T--GCC-ATC--GAAGGA-AA----AATTAC--ATCAATATCTGA-GAA-AA-TTCG-CCAT--C----AATATGACCC-TATAACAATTAAAGT-AG-A-T-TTTTAATCTA--TATTAGTGA-TAATAATA--AAAA-GTTATT-C-TTATT--T-ACAA-ATTCAATTAGT-G--CAC-ACCCC-A-CATA-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGACGAGAAATACCGAATA-CA-CCCtt
gi|3 : TGTTTTTTTTGTTTGTTTGTTGTTGT-TTGTTT-------G----------TTGT------------TTTTT--TTT-TTTGTGGGGGGGGTGTCAGGACT---AATCTTATTGTATTGAATTTGAAGAGAGGGGACCCGAGTACTGTGAGG-TGT--TCCTCACTACA-TTCTAT-CACTGATG--CCAGTATCA-CAGGCTG-TCCGTCA-----CAACTTTCCCTTGAAG--GAAATCATA------ACACT-GTTACGAGG-T-GATTAG-AT-GGT-AGCT-CTGGT-TGAGGT-------GTTTGAGAGCTAA-GAACATTC---AGC-ACA-CT-GTAGTCCACTTTATGACCACGAA-TTGTGGG-TCAAGCACTGCGGGCGGTA-TCT-AATTGTTCATTCCATA--GTCTTCA-C-CTCAAGT-TAA-TTCCC-TCGT--T-GAAGCACCT--AA-TCTAATT--CA--------TCATAT---TCAGAAGCT--TGAAA-TGAGCGTGG-TGG-CTGAG--GCATA-GAAAA-AGCATATAAACTAGAAATGCATCTGTCCATT-CTAGTGAGGGTTT-AAGTCTTGACACTGG-T-TAGCA---TC-------GCTC-TTGCAACTAACCCCC--------CCTTTT--ATTACAAAATCT-CTTCTGTCA-T--------ACATT-AGAAA-A-G-AT--GTTAT-GAGCAAC--AGAAC--AAT----CAG-GT-TGCAGAGCTTAATGAT-TTGGACTTTAACGAGTTGGACA-CATTGCTAGA-TAAGGCTGAATAGATA---AT-CAACTTACA-A-AAGACTGG-TACCC-GTACATTG-TGTAATGA--GCTTGTAA-TGCATGGATATCAGATGCAGCAAGGACGTGGGAGGGGGTGTAGGA-CCAGCACTG-------AAAGTATGCTAGCTTGGCTC-GAG-GACCCTGTTATAGCCTGGAGAG-ATTC---------TG-T-CCGTTTCCAGTG-AT-GG-TC-AATG--GCCT-GTG-ACATTATTTAGACTTCTTGG-CGGCTGCCCGCAAAGCGTGTAG-------TGGGCTTCTGG-AATT-TC-TCTGTTCCTTAGTTT---T----GAGG--CA-----TTTT--CTCGTGG-AAG-----------
gi|4 : tgtaaactggcatagtgccccaatacctatcaatgctatggagaactctcccatattgTTCTGTCAGT--------AGATTCAGCAA-TTC-AT-CATTGACAAGCAAA--AG-CC--AATAT---AATGTATGCAGAGCTTG-TGATTTTAGACTTTAA---ATTGGAAAACAT-GCT-AAGTATGGCTGAATAAATATT-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTA--AAGGGGTGGTAAATCCAGCACTAGTTCCACCAGTTCTGTTGGCT-GTCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGG---TGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGATGACTGTG-GCTTA-CGTGTAG-------TAGGCTTCT-G-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG-----------AAACAATAATATGCA-TTAGAcatcacaccagaaaaaatgtgattaaattatt
gi|4 : AA-TTATC-AATAAATTCAT--AAGCACCT-AAGC-CGTATTTGC-CACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTA-TTTT--AATGAA-CG-A-ATTTTC-AACCCA--TTTGC--ATCCGAAAGGA-AA----T--TACCA--C-ATATCTGA-GAA-AAATTCG-CCACG-C----AATA-TACCCTTATAACAATT-AAAT-AA-TTT-TTTTAATCTA--TATTAGTGA-TAATAATA--GAAA-GTGGTT-C-TTATT--T-ACAA-ATTCAATTA-T-G--CAC-ACCCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--TAG-CC--GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATAataattatcaataaattcataagcacctaagccgtatttgccacattctaaaattgttggtcatggcgccctgagatgccatgctggtattttaatgaacgaattttcaacccatttgcatccgaaaggaaattaccacatatctgagaaaaattcgccacgcaatatacccttataacaattaaataatttttttaatctatattagtgataataatagaaagtggttcttatttacaaattcaattatgcacaccccacatgtattgaacctacttgtatccgatggatgggtgaaaaggaggaaaatccgaatacacccggcttttatagtgctatagccgcaggccgaacccgaccgaaatcaaacccgttttctcgtaaaataaagtcatcgattttatatgcataaaatagatgatat
gi|5 : ttctgtcagtagattcagcaattcatcattgacaagcaaaagccaatataatgtatgcagagcttgtgattttagactttaaattggaaaacatgctaagtatggctgaataaatattacacaaccaatagagaccgattcccagtacatgtggtataaatgcttgtacctgcttggatatccaatgcataaacgacttaaaggggtggtaaatccagcactagttccaccagttctgttggctgtctctgagtgaccctgggagagattcagtcattctggtgtctcagtggatgggtctggtgtgcctgtgtacaatttagccatcttggatgactgtggcttacgtgtagtaggcttctgaatttctcatttctaaatttcttgggaggcattttcctcgtggaaagaaacaataatatgcattagaatACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCAT-TTGTTT-------G----------TTTTTTTTTTGTTTTTTTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTCAC--------CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAA-CGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA--CATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAAGGCTGAATA---A-T-ACACAACCAATA-G-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCTt
gi|6 : ataaACTGAAATATGTA-ATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCAT-TTGTTT-------G----------TTTTTTTTTGTTTTTTTTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAG-GTGGGTTAGTTGCTAAT-AGAGGT-------G-TTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACACCGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC-------A--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAA-CGGTTATTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA-ACATATTATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CAT--TCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAAGGCTGAATA---A-T-ACACAACCAATAGG-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGC-TGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCT
gi|7 : ataaACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTTCATTTTGT-TTGTTTTTTTTTTG----------TTTT------------TTTTT--TTT-CTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCT-TCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC-------A--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAACCGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA-ACATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAA-CCCCTCCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGA-CTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAAGGCTGAATA---A-T-ACACAACCAATA-G-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCT
gi|8 : ataaACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCAT-TTGTTT-------GTTTTTTTTTGTTTT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT--CCTTGAAGTTGACATAATAGATCC-ACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCAT-AACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC-------A--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAA-CGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGT-GGTTGAGA-ACATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCTTTTTTCATTAC-AAATAT-CTTCTGTCAGT--------AGA-TCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAA-GCTGAATA---A-T-ACACAACCAATA-G-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCT
gi|9 : taaGAATAAATAAT-ACACAACCAATA-G-A-GAC-GA-TTCCCAGTACAC-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGTATAAACAACTTG--AAGGGGTGGTAAATCCAGCAGTA-------CAGTTCTGTGGGCT-GGCTCTGAGTGACCCTG---------G-AGAG-ATTCA-GTCATTCTGGC-CTGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGTT-GCTTA-CGTGTAG-------TAGGCTTCTGG-AATT-CC-TC-ATCTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGG-AAAGA---------AAACAATAATATGCA-TTAGATCTAGTTTTTTTTTTCTTTCTTTCTTTCTTTTTTCCATATTAGAG----AGCGAGAGCGTG-AAT--TG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGTACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTA-TTTT--AATG-AACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TTGC-ATC-ATATCTGA-GAA-TA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AATT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAACAATAA
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 11 2222 7777777777777777777777777777777777 22222222 111 1111111 111 11 11111 1111111 4444444444 1 1 222 3333333333 111 1 3333333 11111111 111 1 1 11 1 1111111 1 1111111 333333333 111 11 11 2222222 111 11 22222 4444444444 1 1 222222222222222222222222 333 2222 1 11 111 1 1 1 11 1 1 1 1 111 1 11 111 1 333333 11 11 1 4444444444444 1 1 1 1 1 2222222 1 1 11 1 1 1 1 11111 11 111 1 111111
lowQualScore : 0 0 11 0 6 6 8888 6 7777777777777777777777777777777777 77 4 00000000 5 77 000 0 77 8888888 5 000 77 5 4 1 33 3 44444 5 0 1 5 3 5 5 6666666 0 5 888 3 4 5 0 5 5 5 5 1 6666666666 5 5 5 5 0 0 0 5 888 5 0000000000 3 3 3 666 0 66 5555555 5 5 77 1 0 4 7 44 1 3 555 1 66666666 000 4 4 2 66 66 66 4 2 00 2 4 1 6 2 8888888 4 4 4 4 0 4 4 777 1 4444444 4 0 0 0 222222222 0 8 88 555 8 8 0 88 8 0 11 3 11 1 8 6666666 8 8 8 8 444 0 11 00000 8 9 3333333333 0 0 666666666666666666666666 000 8888 3 7 88 666 0 0 0 33 0 55 3 3 0 2 3 0 0 2 888 0 33 55 3 111 0 555555 22 33 0 0000000000000 0 0 0 0 0 3333333 0 7 3 0 6 1 8 88888 11 88 11 5 6 6 6 1 66 0 5 5 5 66 5 0 0 5 5 0 33333 5 66 5 5 5 5 5 6 6 6 6 99 5 33 5 5 77 000 5 5 5 9 888 5 5 5 5 444444 888
lowQualScore : . . .. . . . .... . .................................. .. . ........ . .. ... . .. ....... . ... .. . . . .. . ..... . . . . . . . ....... . . ... . . . . . . . . . .......... . . . . . . . . ... . .......... . . . ... . .. ....... . . .. . . . . .. . . ... . ........ ... . . . .. .. .. . . .. . . . . . ....... . . . . . . . ... . ....... . . . . ......... . . .. ... . . . .. . . .. . .. . . ....... . . . . ... . .. ..... . . .......... . . ........................ ... .... . . .. ... . . . .. . .. . . . . . . . . ... . .. .. . ... . ...... .. .. . ............. . . . . . ....... . . . . . . . ..... .. .. .. . . . . . .. . . . . .. . . . . . . ..... . .. . . . . . . . . . .. . .. . . .. ... . . . . ... . . . . ...... ...
lowQualScore : 8 8 00 8 7 7 3333 7 2222222222222222222222222222222222 99 3 77777777 7 99 000 1 99 6666666 0 000 99 7 3 4 66 9 33333 7 7 4 7 2 0 0 2222222 1 0 888 1 2 0 4 0 0 0 9 0 8888888888 0 0 0 0 4 0 0 0 555 0 0000000000 4 2 2 666 0 99 0000000 7 7 99 4 7 3 1 44 1 2 222 1 11111111 111 4 4 8 11 11 11 0 2 66 8 4 9 4 1 9999999 0 0 0 0 0 0 0 111 0 4444444 4 8 8 8 000000000 8 0 88 000 0 0 8 88 0 8 00 2 22 0 0 0000000 0 0 0 0 000 8 00 00000 0 6 8888888888 0 0 777777777777777777777777 333 3333 3 3 33 777 0 0 0 88 0 00 2 2 0 5 0 0 0 5 000 0 88 88 2 000 0 555555 55 88 0 2222222222222 0 0 0 0 0 8888888 0 0 2 8 0 4 0 88888 00 88 88 0 7 7 7 4 99 0 0 0 0 99 0 0 0 0 0 9 44444 0 99 0 0 0 7 7 7 7 7 7 22 7 66 7 7 99 000 7 7 0 4 888 0 0 0 0 444444 888
consensus : ACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCGT-TTGTTT-------G----------TTTT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAANTGTTCAT--CATA--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT--AAATCTA-TTACCAA-CGGTT-TCATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGCTGAGA-GCATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCCTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CATTGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGGAAAACAT-GCTAAAATAAGGCTGAATAAATA-T-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTN--ANGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGCG-GCNTA-CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAA-CAATAATATGCA-TTAGATCTAGTTTT------C------------TTTTTCCCATG--AGAG----AGCGAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGCACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAC--GCTGGTA-TTTT--AATGAAACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TACCAATC-ATATCTGA-GAA-AA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AAGT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAANAATAATAAAA-GTTATT-C-TTA-T--T-ACAA-ATTCAATTA-T-G--CAC-A-CCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--CAG-CCG-GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAACCCCGTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
Reference ( family-1261 ) : ACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCGT-TTGTTT-------G----------TTTT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAANTGTTCAT--CATA--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT--AAATCTA-TTACCAA-CGGTT-TCATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGCTGAGA-GCATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCCTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CATTGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGGAAAACAT-GCTAAAATAAGGCTGAATAAATA-T-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTN--ANGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGCG-GCNTA-CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAGG----------AAA-CAATAATATGCA-TTAGATCTAGTTTT------C------------TTTTTCCCATG--AGAG----AGCGAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGCACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAC--GCTGGTA-TTTT--AATGAAACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TACCAATC-ATATCTGA-GAA-AA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AAGT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAANAATAATAAAA-GTTATT-C-TTA-T--T-ACAA-ATTCAATTA-T-G--CAC-A-CCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--CAG-CCG-GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAACCCCGTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
gi|1 : ACTGA-----GTATATAAGAAATAGTGATGGAGGC-CGATTATT----------------GTGTTGTT--------G----------TTTT------------TTTTG--GTTGTTTAT--------T-TTA--ATT---T-TATT--TGCATTGGA-------AGAGGGGACAC-AG--------GGATGTTGGCCCCAC-ACACTCCTATGCACT-ATGGACCAGTATTAACAGGCTGGTCATTCA-----CAACTC-CCCTTGAAGTTGAAATGATAGATCCAACACTTGTTATGAGGCT-GATTAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAC-C---AGCCACACCTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTAAATTGTTCAT--CATAAGTCCTCCA-CTC-CAA---TAAATTCCCTACCTCTT-GAAGCCCCT--AAATCTA-TTACCA------T-GCATATATATAAGAAGCCCTTG-AAATGACTGTGGGTGGGCTGAG--GCATA-TATAGTAAAATG--AACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-CTGCC--TGGATATAGCAAGCTCC------------TGTAACTAACCCCC-------CCCTTTTTCG-TACAGAATA--CTTCTGTCAGTACTACAGAAGATTCAGCAATT-C-AT-CATTGTCAAGC-AA--AGGCC--AATAT--CAATGTATGCAGAGCTTG-TGAT-TTAAA--TTA---AATTGGAAAAAAT-GCT-AAATATGGCTGAATAAATA-T-ATACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTG--AAGGGGTGGTAAATCCAGCACTA-------CTGTTCTGTTGGCT-GGCTCTGAGTGACCC-G---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCTC-AGTGGATGGGGTCTGGTGATGCCT-GTGTAAC--ATTTAGCCATCTTGTGTGACTGTG-ACGTA-CGTGTAGTACTAGTTAGGCTTCTGGTAATT-TC-TC-ACTCCTAAATTTTGCTTTGGGAGGCTCA-----TTTTACCTCGTGGAA-G----------AAA-CAATAATTTGCAGTTAGATCTAATTT--------------------TTTTCCCCATG--GGAGAGAAAGCGAGTGCGTGAAATTCTGTATGCACAAATGACCCATTTACCTCATATTT-CATACAAGCACCTCAAG-GCG-ATTTGCACACATTCCTAAAATTGTTGGTCATGGCGCCCGGACGATTGCCACTGGCTGGTA-TTTTTAAATGAAACG-ACATTTTCAAATCCAGGTGGGCCAATC--GAAGGATAAATGGA--TATTAATC-ATATCTGACGAACAA-TTCGTCCACGACAAAAAATA-GACCTCTAT-ACAA-T-AAGT-AGAATTATTTTAAT-TA--TATTAGTGA--AAGAATAATAAAA-GTTATTGCGTTA-T--T-AGAA-ATTC-ATCA-T-G--CAC-A-CCC-A-CATGTTATTGAACCTGCTTG-TATTCCGAATGGA--TGGG-TGAAAAGGAGGA-AAAA-CCGAATA-CA-CCCGGC-TTT-TAGTACTGC-TA--TAG-CCG-GCAGGC-CGAACCTGAA--CCGGATAAATTC-AAACCCCGTTTTTC---TCGTAAAAT--AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
gi|10 : AGTAT-GGTTAACTGTT-----GAGGTTGTGCTGGCTTG-GA---CATAGACAC-CTGCAGACGGAACTCGTAATCTACTTT-CGACCACGAAATAGTGAAGTCGA-CACTGCAG-AG-AAGTCTAAATTGCTTAT--AAT---TCTTCTACC-C-CAGATCTAAATTACA-ATATCAT-CATGCCCCC---AATCTA-CTGTCGA--GA-----ATGCATTTAAGAAGCTCTTG-AAATGACTGAAGGTGGACTGAAATGTATA-TATAATGGCAAA--CACTATAAAGGc
gi|11 : cattgaagttgaaattctacctgtagcgctgattgtcagaagaattacatgtACAATTGAAATGAG-ATG-TTTAAATCTAATCATTAGTGAGTAAG--TAATAAAA-AGTATT-C-TTA-TGTT-ACAAGATTCAATTA-T-GGGCAC-A-CCC-A-AATG-TATTCGACCTGATTGGTA-TCCG-ATGGAATTGGGGTGAAAAGGAGGA-AAAG-ACGAATA-CAACCCGGCGTTT-TA-TAGTGC-TA--TAG-CGC-GCAGGC-CG-ACCCG-A--CCG---AAA-TC-AAACGCCGTTCTTC---TCGTAAAATAGAAGTC-ATCGATTTTATATGCA-TGAAGA------T---AGATGATAa
gi|12 : atTAATAAAAAGTTATT-C-CTA-T--TCACAA-ATTCAATTA-T-G--CAC-A-CCCCA-CATG-TATTGAACCTACTTG-TA-TCTG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGAC-TTT-TA-TAGTGC-TA--CAA--CG-ACAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTG-ATCGATTTTATATGCA-T-AAAATACATGT---AGATGATAt
gi|13 : --T-ACAA-AATTAATTG-TTG--AGC-A-CCC-AGCATG-TA---GACCTACTTG--A--CCG-ATGGA--TGCG-TGGAAAGGAGGC-AAAT-CTGAATGTTA-CCCAGT-TTTATA-TAGTGCTTAACCAGCCCGCGCAGGCTCGAACCCG-ACCCCA---AAA-TG-GACACCCATTTTTCTCTTCGTAAAA-A-AAGTCAATCGATTTTATATGCATT-AAAA------TCAGAAATGAttat
gi|14 : -T--T-ACAA-ATTCAATTA-T-G--CACTC-CCC-A-CATG-TATTGAACCT---------------TGGA--TGGG-TGAAAAGGGGGA-ACAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-AA--CAG-CC--GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AGAA------T---AGATGATAatatt
gi|15 : tactctgttacatAGAGCTTG-TGATTTTAGACTTTAA----TTGGAAGACAT-GCTAAA-TACGGCTGAATAAATA-TTACACAACCAATA-G-A-GGCCGA-TTCCCAGTACAT-G-CGGTATAAATGCTTGTACCTGtt
gi|16 : CCCCCCCCTTTTCATTACAAAATATTCTTCTGTCAGT--------ACATTCAGCAA-A-AGATGTGTTGTCAAGCAAA--ATATCTCAATAT--CAATGTATGCAGAGCTTA-TG
gi|17 : ATAATAAAA-GTGA-T-C-TTA-T--TAACAA-ATTCAGTTA-T-G--CAC-A-CCCAA-CATG-TATTGAACCTACTTG-T-------ATGGA--TGGG-TGAAAAGGAGGA-AAAT-C
gi|18 : tgggAG-CCG--CAGGC-CGAACCCG-A--CCA---AAA-TAGAAACCCCCTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGAT
gi|19 : gCCCGTTTT-C---TCGTAAAATA-AAGTC-ATCGAATTTATATGCA-T-AAAA------T---AGATGATA
gi|2 : TTTTGGTTTGTTTAT--------T-TTT--ATTTATAGTATT--TGCG--AGA-------AGAGGGTACACGAG--------GGATGT--GCCTCACTACA---CAAT-CA--TATGT-CCAGTATTAACAGGCTGATCTATCAACTCACAACTT-CTCCTGAAGTTGAAATGATAGATCCAACAATTGTTATGAGGCTTGATTAGTGT-GGTTAGCTGCTAATTAGAGGT-------GTT---GAGGTC-TAAACAC-C---AGCCACGCCTCGTAGTCCACTCT--GACCACGAATTGGTGGGGTCGA-CACTGCGG-GC-TAGTCTAAATTGTTCAT--CATAAGTCCTCCA-C-C-CAAAT-AACTTTCCCTACCTC-TTGAAACCCCCTAAAATATA-T-ACCA------T-GCATATAT-TAAGAAGCCCTTGAAA-TGACTGTGGGTGGGCTGAG--GCATACTATAGTAAAATG--AACTAGAAAAGCGCATGTCTACTGCT------GGTTTTGAAT-ATGCC--TGGATATAGCAAGCTCCTTGTAA-----------C--ACCCCCCCCCT-------TTTCA--ATAAAAT---CTTCTGTCA----------AAATTCAGAGA-TTC-AT-CA--ATCATGGAAAGCATAGC--AATATTGCA--GTATGC----CTTG-TGAT-TTAGACTTTTA--AATTG-AGAACAT--CTAAATT--GGCTGAATAATAA-C-ACAGAACCAATA-GGA-GACCGACTTTCCAGTACAT-GCTGGTAAAAAAGCTTGTACCTGCTGTGATATCCAATGCATAAACGACTTG--AAGGGGTGGTAAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GG-GAGAATTCAGGTCATTCTGATGCTGTCT--AGTGGAT--GGTCTGGTG-T-CGTGGTGTGCA--ATTTAGCCATCTTCGGTGACTGCG---CTA-CCGGTAT-------TAGGCTTCTGG-AATTCTCATC-ATCTCTAAATTT---CTTGGGAGG--CATGCATTTTT-CCTCGTGGAAAGGAAAAGCAACAAA-CAATAATATGCA-TTAGATCTA----T------T------------TTTTTCCCAT---AGAG----AGCAAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTGTC-AATAAAT-CAT--AAGCACCT-ATGCGCATATTTGCACACATT-CTAAAATTGTTGGTCATGAC---------A-TGC--------GGTATTTTT--AAT-AAACGAA-ATTTTC-AATCC---T--GCC-ATC--GAAGGA-AA----AATTAC--ATCAATATCTGA-GAA-AA-TTCG-CCAT--C----AATATGACCC-TATAACAATTAAAGT-AG-A-T-TTTTAATCTA--TATTAGTGA-TAATAATA--AAAA-GTTATT-C-TTATT--T-ACAA-ATTCAATTAGT-G--CAC-ACCCC-A-CATA-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGACGAGAAATACCGAATA-CA-CCCtt
gi|3 : TGTTTTTTTTGTTTGTTTGTTGTTGT-TTGTTT-------G----------TTGT------------TTTTT--TTT-TTTGTGGGGGGGGTGTCAGGACT---AATCTTATTGTATTGAATTTGAAGAGAGGGGACCCGAGTACTGTGAGG-TGT--TCCTCACTACA-TTCTAT-CACTGATG--CCAGTATCA-CAGGCTG-TCCGTCA-----CAACTTTCCCTTGAAG--GAAATCATA------ACACT-GTTACGAGG-T-GATTAG-AT-GGT-AGCT-CTGGT-TGAGGT-------GTTTGAGAGCTAA-GAACATTC---AGC-ACA-CT-GTAGTCCACTTTATGACCACGAA-TTGTGGG-TCAAGCACTGCGGGCGGTA-TCT-AATTGTTCATTCCATA--GTCTTCA-C-CTCAAGT-TAA-TTCCC-TCGT--T-GAAGCACCT--AA-TCTAATT--CA--------TCATAT---TCAGAAGCT--TGAAA-TGAGCGTGG-TGG-CTGAG--GCATA-GAAAA-AGCATATAAACTAGAAATGCATCTGTCCATT-CTAGTGAGGGTTT-AAGTCTTGACACTGG-T-TAGCA---TC-------GCTC-TTGCAACTAACCCCC--------CCTTTT--ATTACAAAATCT-CTTCTGTCA-T--------ACATT-AGAAA-A-G-AT--GTTAT-GAGCAAC--AGAAC--AAT----CAG-GT-TGCAGAGCTTAATGAT-TTGGACTTTAACGAGTTGGACA-CATTGCTAGA-TAAGGCTGAATAGATA---AT-CAACTTACA-A-AAGACTGG-TACCC-GTACATTG-TGTAATGA--GCTTGTAA-TGCATGGATATCAGATGCAGCAAGGACGTGGGAGGGGGTGTAGGA-CCAGCACTG-------AAAGTATGCTAGCTTGGCTC-GAG-GACCCTGTTATAGCCTGGAGAG-ATTC---------TG-T-CCGTTTCCAGTG-AT-GG-TC-AATG--GCCT-GTG-ACATTATTTAGACTTCTTGG-CGGCTGCCCGCAAAGCGTGTAG-------TGGGCTTCTGG-AATT-TC-TCTGTTCCTTAGTTT---T----GAGG--CA-----TTTT--CTCGTGGAAG
gi|4 : tgtaaactggcatagtgccccaatacctatcaatgctatggagaactctcccatattgTTCTGTCAGT--------AGATTCAGCAA-TTC-AT-CATTGACAAGCAAA--AG-CC--AATAT---AATGTATGCAGAGCTTG-TGATTTTAGACTTTAA---ATTGGAAAACAT-GCT-AAGTATGGCTGAATAAATATT-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTA--AAGGGGTGGTAAATCCAGCACTAGTTCCACCAGTTCTGTTGGCT-GTCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGG---TGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGATGACTGTG-GCTTA-CGTGTAG-------TAGGCTTCT-G-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAA-CAATAATATGCA-TTAGAcatcacaccagaaaaaatgtgattaaattatt
gi|4 : AA-TTATC-AATAAATTCAT--AAGCACCT-AAGC-CGTATTTGC-CACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTA-TTTT--AATGAA-CG-A-ATTTTC-AACCCA--TTTGC--ATCCGAAAGGA-AA----T--TACCA--C-ATATCTGA-GAA-AAATTCG-CCACG-C----AATA-TACCCTTATAACAATT-AAAT-AA-TTT-TTTTAATCTA--TATTAGTGA-TAATAATA--GAAA-GTGGTT-C-TTATT--T-ACAA-ATTCAATTA-T-G--CAC-ACCCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--TAG-CC--GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATAataattatcaataaattcataagcacctaagccgtatttgccacattctaaaattgttggtcatggcgccctgagatgccatgctggtattttaatgaacgaattttcaacccatttgcatccgaaaggaaattaccacatatctgagaaaaattcgccacgcaatatacccttataacaattaaataatttttttaatctatattagtgataataatagaaagtggttcttatttacaaattcaattatgcacaccccacatgtattgaacctacttgtatccgatggatgggtgaaaaggaggaaaatccgaatacacccggcttttatagtgctatagccgcaggccgaacccgaccgaaatcaaacccgttttctcgtaaaataaagtcatcgattttatatgcataaaatagatgatat
gi|5 : ttctgtcagtagattcagcaattcatcattgacaagcaaaagccaatataatgtatgcagagcttgtgattttagactttaaattggaaaacatgctaagtatggctgaataaatattacacaaccaatagagaccgattcccagtacatgtggtataaatgcttgtacctgcttggatatccaatgcataaacgacttaaaggggtggtaaatccagcactagttccaccagttctgttggctgtctctgagtgaccctgggagagattcagtcattctggtgtctcagtggatgggtctggtgtgcctgtgtacaatttagccatcttggatgactgtggcttacgtgtagtaggcttctgaatttctcatttctaaatttcttgggaggcattttcctcgtggaaagaaacaataatatgcattagaatACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCAT-TTGTTT-------G----------TTTTTTTTTTGTTTTTTTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTCAC--------CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAA-CGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA--CATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAAGGCTGAATA---A-T-ACACAACCAATA-G-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCTt
gi|6 : ataaACTGAAATATGTA-ATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCAT-TTGTTT-------G----------TTTTTTTTTGTTTTTTTTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAG-GTGGGTTAGTTGCTAAT-AGAGGT-------G-TTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACACCGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC-------A--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAA-CGGTTATTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA-ACATATTATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CAT--TCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAAGGCTGAATA---A-T-ACACAACCAATAGG-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGC-TGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCT
gi|7 : ataaACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTTCATTTTGT-TTGTTTTTTTTTTG----------TTTT------------TTTTT--TTT-CTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCT-TCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC-------A--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAACCGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA-ACATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAA-CCCCTCCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGA-CTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAAGGCTGAATA---A-T-ACACAACCAATA-G-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCT
gi|8 : ataaACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCAT-TTGTTT-------GTTTTTTTTTGTTTT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT--CCTTGAAGTTGACATAATAGATCC-ACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCAT-AACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC-------A--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAA-CGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGT-GGTTGAGA-ACATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCTTTTTTCATTAC-AAATAT-CTTCTGTCAGT--------AGA-TCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAA-GCTGAATA---A-T-ACACAACCAATA-G-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCT
gi|9 : taaGAATAAATAAT-ACACAACCAATA-G-A-GAC-GA-TTCCCAGTACAC-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGTATAAACAACTTG--AAGGGGTGGTAAATCCAGCAGTA-------CAGTTCTGTGGGCT-GGCTCTGAGTGACCCTG---------G-AGAG-ATTCA-GTCATTCTGGC-CTGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGTT-GCTTA-CGTGTAG-------TAGGCTTCTGG-AATT-CC-TC-ATCTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAAACAATAATATGCA-TTAGATCTAGTTTTTTTTTTCTTTCTTTCTTTCTTTTTTCCATATTAGAG----AGCGAGAGCGTG-AAT--TG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGTACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTA-TTTT--AATG-AACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TTGC-ATC-ATATCTGA-GAA-TA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AATT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAACAATAA
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 11 2222 7777777777777777777777777777777777 22222222 111 1111111 111 11 11111 1111111 4444444444 1 1 222 3333333333 111 1 3333333 11111111 111 1 1 11 1 1111111 1 1111111 333333333 111 11 11 2222222 111 11 22222 4444444444 1 1 222222222222222222222222 333 2222 1 11 111 1 1 1 11 1 1 1 1 111 1 11 111 1 333333 11 11 1 4444444444444 1 1 1 1 1 2222222 1 1 11 1 1 1 1 11111 11 111 1 111111
lowQualScore : 0 0 11 0 6 6 8888 6 7777777777777777777777777777777777 77 4 00000000 5 77 000 0 77 8888888 5 000 77 5 4 1 33 3 44444 5 0 1 5 3 5 5 6666666 0 5 888 3 4 5 0 5 5 5 5 1 6666666666 5 5 5 5 0 0 0 5 888 5 0000000000 3 3 3 666 0 66 5555555 5 5 77 1 0 4 7 44 1 3 555 1 66666666 000 4 4 2 66 66 66 4 2 00 2 4 1 6 2 8888888 4 4 4 4 0 4 4 777 1 4444444 4 0 0 0 222222222 0 8 88 555 8 8 0 88 8 0 11 3 11 1 8 6666666 8 8 8 8 444 0 11 00000 8 0 3333333333 0 0 666666666666666666666666 000 8888 3 7 88 666 0 0 0 33 0 55 3 3 0 2 3 0 0 2 888 0 33 55 3 111 0 555555 22 33 0 0000000000000 0 0 0 0 0 3333333 0 7 3 0 6 1 8 88888 11 88 11 5 6 6 6 1 66 0 5 5 5 66 5 0 0 5 5 0 33333 5 66 5 5 5 5 5 6 6 6 6 99 5 33 5 5 77 000 5 5 5 9 888 5 5 5 5 444444 888
lowQualScore : . . .. . . . .... . .................................. .. . ........ . .. ... . .. ....... . ... .. . . . .. . ..... . . . . . . . ....... . . ... . . . . . . . . . .......... . . . . . . . . ... . .......... . . . ... . .. ....... . . .. . . . . .. . . ... . ........ ... . . . .. .. .. . . .. . . . . . ....... . . . . . . . ... . ....... . . . . ......... . . .. ... . . . .. . . .. . .. . . ....... . . . . ... . .. ..... . . .......... . . ........................ ... .... . . .. ... . . . .. . .. . . . . . . . . ... . .. .. . ... . ...... .. .. . ............. . . . . . ....... . . . . . . . ..... .. .. .. . . . . . .. . . . . .. . . . . . . ..... . .. . . . . . . . . . .. . .. . . .. ... . . . . ... . . . . ...... ...
lowQualScore : 8 8 00 8 7 7 3333 7 2222222222222222222222222222222222 99 3 77777777 7 99 000 1 99 6666666 0 000 99 7 3 4 66 9 33333 7 7 4 7 2 0 0 2222222 1 0 888 1 2 0 4 0 0 0 9 0 8888888888 0 0 0 0 4 0 0 0 555 0 0000000000 4 2 2 666 0 99 0000000 7 7 99 4 7 3 1 44 1 2 222 1 11111111 111 4 4 8 11 11 11 0 2 66 8 4 9 4 1 9999999 0 0 0 0 0 0 0 111 0 4444444 4 8 8 8 000000000 8 0 88 000 0 0 8 88 0 8 00 2 22 0 0 0000000 0 0 0 0 000 8 00 00000 0 8 8888888888 0 0 777777777777777777777777 333 3333 3 3 33 777 0 0 0 88 0 00 2 2 0 5 0 0 0 5 000 0 88 88 2 000 0 555555 55 88 0 2222222222222 0 0 0 0 0 8888888 0 0 2 8 0 4 0 88888 00 88 88 0 7 7 7 4 99 0 0 0 0 99 0 0 0 0 0 9 44444 0 99 0 0 0 7 7 7 7 7 7 22 7 66 7 7 99 000 7 7 0 4 888 0 0 0 0 444444 888
consensus : ACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCGT-TTGTTT-------G----------TTTT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAANTGTTCAT--CATA--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT--AAATCTA-TTACCAA-CGGTT-TCATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGCTGAGA-GCATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCCTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CATTGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGGAAAACAT-GCTAAAATAAGGCTGAATAAATA-T-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTN--ANGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGCG-GCNTA-CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAA-CAATAATATGCA-TTAGATCTAGTTTT------C------------TTTTTCCCATG--AGAG----AGCGAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGCACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAC--GCTGGTA-TTTT--AATGAAACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TACCAATC-ATATCTGA-GAA-AA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AAGT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAANAATAATAAAA-GTTATT-C-TTA-T--T-ACAA-ATTCAATTA-T-G--CAC-A-CCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--CAG-CCG-GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAACCCCGTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
Reference ( family-1261 ) : ACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCGT-TTGTTT-------G----------TTTT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAANTGTTCAT--CATA--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT--AAATCTA-TTACCAA-CGGTT-TCATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGCTGAGA-GCATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCCTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CATTGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGGAAAACAT-GCTAAAATAAGGCTGAATAAATA-T-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTN--ANGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGCG-GCNTA-CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAA-CAATAATATGCA-TTAGATCTAGTTTT------C------------TTTTTCCCATG--AGAG----AGCGAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGCACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAC--GCTGGTA-TTTT--AATGAAACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TACCAATC-ATATCTGA-GAA-AA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AAGT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAANAATAATAAAA-GTTATT-C-TTA-T--T-ACAA-ATTCAATTA-T-G--CAC-A-CCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--CAG-CCG-GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAACCCCGTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
gi|1 : ACTGA-----GTATATAAGAAATAGTGATGGAGGC-CGATTATT----------------GTGTTGTT--------G----------TTTT------------TTTTG--GTTGTTTAT--------T-TTA--ATT---T-TATT--TGCATTGGA-------AGAGGGGACAC-AG--------GGATGTTGGCCCCAC-ACACTCCTATGCACT-ATGGACCAGTATTAACAGGCTGGTCATTCA-----CAACTC-CCCTTGAAGTTGAAATGATAGATCCAACACTTGTTATGAGGCT-GATTAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAC-C---AGCCACACCTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTAAATTGTTCAT--CATAAGTCCTCCA-CTC-CAA---TAAATTCCCTACCTCTT-GAAGCCCCT--AAATCTA-TTACCA------T-GCATATATATAAGAAGCCCTTG-AAATGACTGTGGGTGGGCTGAG--GCATA-TATAGTAAAATG--AACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-CTGCC--TGGATATAGCAAGCTCC------------TGTAACTAACCCCC-------CCCTTTTTCG-TACAGAATA--CTTCTGTCAGTACTACAGAAGATTCAGCAATT-C-AT-CATTGTCAAGC-AA--AGGCC--AATAT--CAATGTATGCAGAGCTTG-TGAT-TTAAA--TTA---AATTGGAAAAAAT-GCT-AAATATGGCTGAATAAATA-T-ATACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTG--AAGGGGTGGTAAATCCAGCACTA-------CTGTTCTGTTGGCT-GGCTCTGAGTGACCC-G---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCTC-AGTGGATGGGGTCTGGTGATGCCT-GTGTAAC--ATTTAGCCATCTTGTGTGACTGTG-ACGTA-CGTGTAGTACTAGTTAGGCTTCTGGTAATT-TC-TC-ACTCCTAAATTTTGCTTTGGGAGGCTCA-----TTTTACCTCGTGG-AAG----------AAA-CAATAATTTGCAGTTAGATCTAATTT--------------------TTTTCCCCATG--GGAGAGAAAGCGAGTGCGTGAAATTCTGTATGCACAAATGACCCATTTACCTCATATTT-CATACAAGCACCTCAAG-GCG-ATTTGCACACATTCCTAAAATTGTTGGTCATGGCGCCCGGACGATTGCCACTGGCTGGTA-TTTTTAAATGAAACG-ACATTTTCAAATCCAGGTGGGCCAATC--GAAGGATAAATGGA--TATTAATC-ATATCTGACGAACAA-TTCGTCCACGACAAAAAATA-GACCTCTAT-ACAA-T-AAGT-AGAATTATTTTAAT-TA--TATTAGTGA--AAGAATAATAAAA-GTTATTGCGTTA-T--T-AGAA-ATTC-ATCA-T-G--CAC-A-CCC-A-CATGTTATTGAACCTGCTTG-TATTCCGAATGGA--TGGG-TGAAAAGGAGGA-AAAA-CCGAATA-CA-CCCGGC-TTT-TAGTACTGC-TA--TAG-CCG-GCAGGC-CGAACCTGAA--CCGGATAAATTC-AAACCCCGTTTTTC---TCGTAAAAT--AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
gi|10 : AGTAT-GGTTAACTGTT-----GAGGTTGTGCTGGCTTG-GA---CATAGACAC-CTGCAGACGGAACTCGTAATCTACTTT-CGACCACGAAATAGTGAAGTCGA-CACTGCAG-AG-AAGTCTAAATTGCTTAT--AAT---TCTTCTACC-C-CAGATCTAAATTACA-ATATCAT-CATGCCCCC---AATCTA-CTGTCGA--GA-----ATGCATTTAAGAAGCTCTTG-AAATGACTGAAGGTGGACTGAAATGTATA-TATAATGGCAAA--CACTATAAAGGc
gi|11 : cattgaagttgaaattctacctgtagcgctgattgtcagaagaattacatgtACAATTGAAATGAG-ATG-TTTAAATCTAATCATTAGTGAGTAAG--TAATAAAA-AGTATT-C-TTA-TGTT-ACAAGATTCAATTA-T-GGGCAC-A-CCC-A-AATG-TATTCGACCTGATTGGTA-TCCG-ATGGAATTGGGGTGAAAAGGAGGA-AAAG-ACGAATA-CAACCCGGCGTTT-TA-TAGTGC-TA--TAG-CGC-GCAGGC-CG-ACCCG-A--CCG---AAA-TC-AAACGCCGTTCTTC---TCGTAAAATAGAAGTC-ATCGATTTTATATGCA-TGAAGA------T---AGATGATAa
gi|12 : atTAATAAAAAGTTATT-C-CTA-T--TCACAA-ATTCAATTA-T-G--CAC-A-CCCCA-CATG-TATTGAACCTACTTG-TA-TCTG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGAC-TTT-TA-TAGTGC-TA--CAA--CG-ACAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTG-ATCGATTTTATATGCA-T-AAAATACATGT---AGATGATAt
gi|13 : --T-ACAA-AATTAATTG-TTG--AGC-A-CCC-AGCATG-TA---GACCTACTTG--A--CCG-ATGGA--TGCG-TGGAAAGGAGGC-AAAT-CTGAATGTTA-CCCAGT-TTTATA-TAGTGCTTAACCAGCCCGCGCAGGCTCGAACCCG-ACCCCA---AAA-TG-GACACCCATTTTTCTCTTCGTAAAA-A-AAGTCAATCGATTTTATATGCATT-AAAA------TCAGAAATGAttat
gi|14 : -T--T-ACAA-ATTCAATTA-T-G--CACTC-CCC-A-CATG-TATTGAACCT---------------TGGA--TGGG-TGAAAAGGGGGA-ACAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-AA--CAG-CC--GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AGAA------T---AGATGATAatatt
gi|15 : tactctgttacatAGAGCTTG-TGATTTTAGACTTTAA----TTGGAAGACAT-GCTAAA-TACGGCTGAATAAATA-TTACACAACCAATA-G-A-GGCCGA-TTCCCAGTACAT-G-CGGTATAAATGCTTGTACCTGtt
gi|16 : CCCCCCCCTTTTCATTACAAAATATTCTTCTGTCAGT--------ACATTCAGCAA-A-AGATGTGTTGTCAAGCAAA--ATATCTCAATAT--CAATGTATGCAGAGCTTA-TG
gi|17 : ATAATAAAA-GTGA-T-C-TTA-T--TAACAA-ATTCAGTTA-T-G--CAC-A-CCCAA-CATG-TATTGAACCTACTTG-T-------ATGGA--TGGG-TGAAAAGGAGGA-AAAT-C
gi|18 : tgggAG-CCG--CAGGC-CGAACCCG-A--CCA---AAA-TAGAAACCCCCTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGAT
gi|19 : gCCCGTTTT-C---TCGTAAAATA-AAGTC-ATCGAATTTATATGCA-T-AAAA------T---AGATGATA
gi|2 : TTTTGGTTTGTTTAT--------T-TTT--ATTTATAGTATT--TGCG--AGA-------AGAGGGTACACGAG--------GGATGT--GCCTCACTACA---CAAT-CA--TATGT-CCAGTATTAACAGGCTGATCTATCAACTCACAACTT-CTCCTGAAGTTGAAATGATAGATCCAACAATTGTTATGAGGCTTGATTAGTGT-GGTTAGCTGCTAATTAGAGGT-------GTT---GAGGTC-TAAACAC-C---AGCCACGCCTCGTAGTCCACTCT--GACCACGAATTGGTGGGGTCGA-CACTGCGG-GC-TAGTCTAAATTGTTCAT--CATAAGTCCTCCA-C-C-CAAAT-AACTTTCCCTACCTC-TTGAAACCCCCTAAAATATA-T-ACCA------T-GCATATAT-TAAGAAGCCCTTGAAA-TGACTGTGGGTGGGCTGAG--GCATACTATAGTAAAATG--AACTAGAAAAGCGCATGTCTACTGCT------GGTTTTGAAT-ATGCC--TGGATATAGCAAGCTCCTTGTAA-----------C--ACCCCCCCCCT-------TTTCA--ATAAAAT---CTTCTGTCA----------AAATTCAGAGA-TTC-AT-CA--ATCATGGAAAGCATAGC--AATATTGCA--GTATGC----CTTG-TGAT-TTAGACTTTTA--AATTG-AGAACAT--CTAAATT--GGCTGAATAATAA-C-ACAGAACCAATA-GGA-GACCGACTTTCCAGTACAT-GCTGGTAAAAAAGCTTGTACCTGCTGTGATATCCAATGCATAAACGACTTG--AAGGGGTGGTAAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GG-GAGAATTCAGGTCATTCTGATGCTGTCT--AGTGGAT--GGTCTGGTG-T-CGTGGTGTGCA--ATTTAGCCATCTTCGGTGACTGCG---CTA-CCGGTAT-------TAGGCTTCTGG-AATTCTCATC-ATCTCTAAATTT---CTTGGGAGG--CATGCATTTTT-CCTCGTGGAAAGGAAAAGCAACAAA-CAATAATATGCA-TTAGATCTA----T------T------------TTTTTCCCAT---AGAG----AGCAAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTGTC-AATAAAT-CAT--AAGCACCT-ATGCGCATATTTGCACACATT-CTAAAATTGTTGGTCATGAC---------A-TGC--------GGTATTTTT--AAT-AAACGAA-ATTTTC-AATCC---T--GCC-ATC--GAAGGA-AA----AATTAC--ATCAATATCTGA-GAA-AA-TTCG-CCAT--C----AATATGACCC-TATAACAATTAAAGT-AG-A-T-TTTTAATCTA--TATTAGTGA-TAATAATA--AAAA-GTTATT-C-TTATT--T-ACAA-ATTCAATTAGT-G--CAC-ACCCC-A-CATA-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGACGAGAAATACCGAATA-CA-CCCtt
gi|3 : TGTTTTTTTTGTTTGTTTGTTGTTGT-TTGTTT-------G----------TTGT------------TTTTT--TTT-TTTGTGGGGGGGGTGTCAGGACT---AATCTTATTGTATTGAATTTGAAGAGAGGGGACCCGAGTACTGTGAGG-TGT--TCCTCACTACA-TTCTAT-CACTGATG--CCAGTATCA-CAGGCTG-TCCGTCA-----CAACTTTCCCTTGAAG--GAAATCATA------ACACT-GTTACGAGG-T-GATTAG-AT-GGT-AGCT-CTGGT-TGAGGT-------GTTTGAGAGCTAA-GAACATTC---AGC-ACA-CT-GTAGTCCACTTTATGACCACGAA-TTGTGGG-TCAAGCACTGCGGGCGGTA-TCT-AATTGTTCATTCCATA--GTCTTCA-C-CTCAAGT-TAA-TTCCC-TCGT--T-GAAGCACCT--AA-TCTAATT--CA--------TCATAT---TCAGAAGCT--TGAAA-TGAGCGTGG-TGG-CTGAG--GCATA-GAAAA-AGCATATAAACTAGAAATGCATCTGTCCATT-CTAGTGAGGGTTT-AAGTCTTGACACTGG-T-TAGCA---TC-------GCTC-TTGCAACTAACCCCC--------CCTTTT--ATTACAAAATCT-CTTCTGTCA-T--------ACATT-AGAAA-A-G-AT--GTTAT-GAGCAAC--AGAAC--AAT----CAG-GT-TGCAGAGCTTAATGAT-TTGGACTTTAACGAGTTGGACA-CATTGCTAGA-TAAGGCTGAATAGATA---AT-CAACTTACA-A-AAGACTGG-TACCC-GTACATTG-TGTAATGA--GCTTGTAA-TGCATGGATATCAGATGCAGCAAGGACGTGGGAGGGGGTGTAGGA-CCAGCACTG-------AAAGTATGCTAGCTTGGCTC-GAG-GACCCTGTTATAGCCTGGAGAG-ATTC---------TG-T-CCGTTTCCAGTG-AT-GG-TC-AATG--GCCT-GTG-ACATTATTTAGACTTCTTGG-CGGCTGCCCGCAAAGCGTGTAG-------TGGGCTTCTGG-AATT-TC-TCTGTTCCTTAGTTT---T----GAGG--CA-----TTTT--CTCGTGGAA
gi|4 : tgtaaactggcatagtgccccaatacctatcaatgctatggagaactctcccatattgTTCTGTCAGT--------AGATTCAGCAA-TTC-AT-CATTGACAAGCAAA--AG-CC--AATAT---AATGTATGCAGAGCTTG-TGATTTTAGACTTTAA---ATTGGAAAACAT-GCT-AAGTATGGCTGAATAAATATT-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTA--AAGGGGTGGTAAATCCAGCACTAGTTCCACCAGTTCTGTTGGCT-GTCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGG---TGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGATGACTGTG-GCTTA-CGTGTAG-------TAGGCTTCT-G-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAA-CAATAATATGCA-TTAGAgcatcacaccagaaaaaatgtgattaaattatt
gi|4 : AA-TTATC-AATAAATTCAT--AAGCACCT-AAGC-CGTATTTGC-CACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTA-TTTT--AATGAA-CG-A-ATTTTC-AACCCA--TTTGC--ATCCGAAAGGA-AA----T--TACCA--C-ATATCTGA-GAA-AAATTCG-CCACG-C----AATA-TACCCTTATAACAATT-AAAT-AA-TTT-TTTTAATCTA--TATTAGTGA-TAATAATA--GAAA-GTGGTT-C-TTATT--T-ACAA-ATTCAATTA-T-G--CAC-ACCCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--TAG-CC--GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATAataattatcaataaattcataagcacctaagccgtatttgccacattctaaaattgttggtcatggcgccctgagatgccatgctggtattttaatgaacgaattttcaacccatttgcatccgaaaggaaattaccacatatctgagaaaaattcgccacgcaatatacccttataacaattaaataatttttttaatctatattagtgataataatagaaagtggttcttatttacaaattcaattatgcacaccccacatgtattgaacctacttgtatccgatggatgggtgaaaaggaggaaaatccgaatacacccggcttttatagtgctatagccgcaggccgaacccgaccgaaatcaaacccgttttctcgtaaaataaagtcatcgattttatatgcataaaatagatgatat
gi|5 : ttctgtcagtagattcagcaattcatcattgacaagcaaaagccaatataatgtatgcagagcttgtgattttagactttaaattggaaaacatgctaagtatggctgaataaatattacacaaccaatagagaccgattcccagtacatgtggtataaatgcttgtacctgcttggatatccaatgcataaacgacttaaaggggtggtaaatccagcactagttccaccagttctgttggctgtctctgagtgaccctgggagagattcagtcattctggtgtctcagtggatgggtctggtgtgcctgtgtacaatttagccatcttggatgactgtggcttacgtgtagtaggcttctgaatttctcatttctaaatttcttgggaggcattttcctcgtggaaagaaacaataatatgcattagaatACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCAT-TTGTTT-------G----------TTTTTTTTTTGTTTTTTTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTCAC--------CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAA-CGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA--CATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAAGGCTGAATA---A-T-ACACAACCAATA-G-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCTt
gi|6 : ataaACTGAAATATGTA-ATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCAT-TTGTTT-------G----------TTTTTTTTTGTTTTTTTTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAG-GTGGGTTAGTTGCTAAT-AGAGGT-------G-TTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACACCGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC-------A--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAA-CGGTTATTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA-ACATATTATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CAT--TCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAAGGCTGAATA---A-T-ACACAACCAATAGG-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGC-TGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCT
gi|7 : ataaACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTTCATTTTGT-TTGTTTTTTTTTTG----------TTTT------------TTTTT--TTT-CTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCT-TCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC-------A--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAACCGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA-ACATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAA-CCCCTCCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGA-CTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAAGGCTGAATA---A-T-ACACAACCAATA-G-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCT
gi|8 : ataaACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCAT-TTGTTT-------GTTTTTTTTTGTTTT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT--CCTTGAAGTTGACATAATAGATCC-ACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCAT-AACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC-------A--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAA-CGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGT-GGTTGAGA-ACATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCTTTTTTCATTAC-AAATAT-CTTCTGTCAGT--------AGA-TCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAA-GCTGAATA---A-T-ACACAACCAATA-G-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCT
gi|9 : taaGAATAAATAAT-ACACAACCAATA-G-A-GAC-GA-TTCCCAGTACAC-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGTATAAACAACTTG--AAGGGGTGGTAAATCCAGCAGTA-------CAGTTCTGTGGGCT-GGCTCTGAGTGACCCTG---------G-AGAG-ATTCA-GTCATTCTGGC-CTGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGTT-GCTTA-CGTGTAG-------TAGGCTTCTGG-AATT-CC-TC-ATCTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAAACAATAATATGCA-TTAGATCTAGTTTTTTTTTTCTTTCTTTCTTTCTTTTTTCCATATTAGAG----AGCGAGAGCGTG-AAT--TG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGTACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTA-TTTT--AATG-AACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TTGC-ATC-ATATCTGA-GAA-TA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AATT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAACAATAA
blockSeqs : . G G GTTG . GTTTTTTTTTTGTTTTT GG G GGGGGGGG G GG TAT AT TTTGAAG T TGT . . G T T A ACTCA T A T T G T TGTGCTG T TGC A C A G G G A T ATCATAAG C . T C T A T TAA A ACGGTTATT T A A ATG C TA AGTGAGG T C AC T C C CC C T ATT G . TT G G T GC TC TG A T CG A T A T C AATATT G G A C G T C GGG A GTTCCAC T TTATAGCCT A AG ATG C . T G TT G CG C G . . C A T . . TGCAT . GAAAAGCAAC A . GTTTTTTTTTTCTTTCTTTCTTTC ATT . . T . C . . T . . CG T A . G T . . C T T . GA A AA . ATTT C CG . AATTACA A . . A . GC T T A G A G ATG AT GT TA A A . . T GT C G G T GG T C C G . GTAT . AT G G A T A G A . T AC C GC T . CC . . G C T TCT G A T G TACATG CAG
blockSeqs : . . . CATT . GTTTTTTTTTGTTTTTT . G . . . . . . T . . . G G . G . . A . T . . . . . C C . . . . A T ATTCCATA . . . . . . . A . ACCGGTTTT A A A AA T . G . . . T C T CT C T CT G . TT . . T . . . . T CG A . A G A AATATT . . . . G . . G G . . . . A GC . . T . . A G A . . . . . . . . . . . . . TT . . . . . C . . . . . CG T A . G T . . C T . . A A A . AT C . . TTACCA . . . . . GC . T A A G . TTT . T TA A . . . T . A . . . . . C A . . TAT . . . . . . . . . . . . . C . . . . . . A T . . . . . . .
blockSeqs : . . . . . GTTTTTTTTTGTTTT . G . . . . . . T . . . G T . A . . A . T . . . . . A T . . . . T T ATAAT . . . . . . . . . ACGGTTTT A A A AA . . . . . . T C T CT T T AT G . A . . T . . . . G CG A . A A T AATAAT . . . . G . . A A . . . . A T . . T . . G G T . . . . . . . . . . . . . . . . . . C T . . . . . . . . . . G . A . T . . . ATTGCA . . . . . C . . A . A . ATT . T CA A . . . . . . . . . . . . . . . TAT . . . . . . . . . . . . . G . . . . . . C T . . . . . . .
blockSeqs : . . . . . TTTTTTTGTTTT . G . . . . . . T . . . G T . A . . A . T . . . . . A T . . . . T G AC . . . . . . . . . ACGGTTTT A A A AA . . . . . . T C T CT T T AT G . A . . T . . . . G CG A . A A A ATAAC . . . . G . . T T . . . . . G . . . . . . . T . . . . . . . . . . . T . AT . T G A . . . . . . . . . . . . . . . TAT . . . . . . . . . . . . . G . . . . . . . T . . . . . . .
blockSeqs : . . . . GTTGT . . . . . . . . T . . . . T . A . . . . T . . . . . A T . . . . T G A . . . . . . . . . AGA A A A G . . . . . . T . T CT T T AT G . T . . . . . . . G CG . . A A A GATA . . . . G . . T T . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . T . . . . . . . . . . . . A T . . . . T G A . . . . . . . . . TGC . A . G . . . . . . . . . . T T AT G . T . . . . . . . G . . . A A A AT . . . . . . . T T . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . G A . . . . . . . . . TC . . . A . . . . . . . . T . . . . . . . . . . . A . A AT . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . AT . . . . . . . G A . .
blockSeqs : . AT . . . . . . .
blockSeqCons : ** GTTTTTTTTTGTTTTT****************** ** ** AT******** *** ACGGTTTT** AG* ******* CT AT* ******** T** CG AATAT** G** T* ******* *** ** ATT** T* TAT** ***
originalCons : ACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCGT-TTGTTT-------G----------TTTT------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAANTGTTCAT--CATA--CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT--AAATCTA-TTACCAA-CGGTT-TCATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGCTGAGA-GCATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT------GGTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCCTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CATTGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGGAAAACAT-GCTAAAATAAGGCTGAATAAATA-T-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTN--ANGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGGT-CTGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGCG-GCNTA-CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAA-CAATAATATGCA-TTAGATCTAGTTTT------C------------TTTTTCCCATG--AGAG----AGCGAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGCACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAC--GCTGGTA-TTTT--AATGAAACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TACCAATC-ATATCTGA-GAA-AA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AAGT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAANAATAATAAAA-GTTATT-C-TTA-T--T-ACAA-ATTCAATTA-T-G--CAC-A-CCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--CAG-CCG-GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAACCCCGTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
finalCons : ACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTTTTT-TTT-TTT----TCGT-TTGTTTGTTTTTTTTTGTTTTT------------------TTTTT--TTTGCTTAT--------T-TTA--ATT---AATATT--TGCATTGGA-------AGAGGGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAANTGTTCAT--------CCTTCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCCT---AATCTA-TTACCAACGGTTTT--ATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGCTGAGAG-CATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------GTTT-GAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCCTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAAT--C-AT-CATTGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGGAAAACAT-GCTAAAATAAGGCTGAATAAATAT--ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTN--ANGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTGG--CTGTCTC-AGTGGAT-GGGTCTGGTGT-GCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGCG-GCNTA-CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAA-CAATAATATGCA-TTAGATCTAGTTTT------C------------TTTTTCCCATG--AGAG----AGCGAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGCACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAC--GCTGGTA-TTTT--AATGAAACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TACCAATC-ATATCTGA-GAA-AA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AAGT-AGATT--TTTTAATCTA--TATTAGTGAT-AANAATAATAAAA-GTTATT-C-TTA-T--T-ACAA-ATTCAATTA-T-G--CAC-A-CCC-A-CATG-TATTGAACCTACTTGTAT--CCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--CAG-CCG-GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAACCCCGTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 11 222 11 333333333333333333 11111 111 11 11111 1111111 3333333333333333 1 1 22222222 111 1 2222222 11111111 111 1 1 11 1 1111111 1 1111111 333333333 222222 11 11 2222222 111 11 22222 4444444444 1 1 222222222222222222222222 333 2222 1 11 111 1 1 1 11 1 1 1 1 111 1 11 111 1 333333 11 11 1 4444444444444 1 1 1 1 1 2222222 1 1 11 1 1 1 1 11111 11 111 1 111111
lowQualScore : 0 0 11 000 6 2 55 6 6 6 6 77 77 333333333333333333 44444 77 5 000 77 5 4 1 33 3 44444 5 0 1 5 3 5 5 6666666 0 5 888 3 4 5 0 5 5 5 5 1 888 5555555555555555 5 5 5 5 0 0 0 5 5 5 5 5 88888888 3 3 3 666 0 66 4444444 77 5 77 1 0 4 7 44 1 3 555 1 66666666 000 4 4 2 66 66 66 4 2 00 2 4 1 6 2 8888888 4 4 4 4 0 4 4 777 1 4444444 4 0 0 0 222222222 0 8 88 222222 8 8 0 88 8 0 11 3 11 1 8 6666666 8 8 8 8 444 0 11 00000 8 0 3333333333 0 0 666666666666666666666666 000 8888 3 7 88 666 0 0 0 33 0 55 3 3 0 2 3 0 0 2 888 0 33 55 3 111 0 555555 22 33 0 0000000000000 0 0 0 0 0 3333333 0 7 3 0 6 1 8 88888 11 88 11 5 6 6 6 1 66 0 5 5 5 66 5 0 0 5 5 0 33333 5 66 5 5 5 5 5 6 6 6 6 99 5 33 5 5 77 000 5 5 5 9 888 5 5 5 5 444444 888
lowQualScore : . . .. ... . . .. . . . . .. .. .................. ..... .. . ... .. . . . .. . ..... . . . . . . . ....... . . ... . . . . . . . . . ... ................ . . . . . . . . . . . . ........ . . . ... . .. ....... .. . .. . . . . .. . . ... . ........ ... . . . .. .. .. . . .. . . . . . ....... . . . . . . . ... . ....... . . . . ......... . . .. ...... . . . .. . . .. . .. . . ....... . . . . ... . .. ..... . . .......... . . ........................ ... .... . . .. ... . . . .. . .. . . . . . . . . ... . .. .. . ... . ...... .. .. . ............. . . . . . ....... . . . . . . . ..... .. .. .. . . . . . .. . . . . .. . . . . . . ..... . .. . . . . . . . . . .. . .. . . .. ... . . . . ... . . . . ...... ...
lowQualScore : 8 8 00 333 7 2 88 7 7 7 7 99 99 000000000000000000 00000 99 0 000 99 7 3 4 66 9 33333 7 7 4 7 2 0 0 2222222 1 0 888 1 2 0 4 0 0 0 9 0 888 0000000000000000 0 0 0 0 4 0 0 0 0 0 0 0 99999999 4 2 2 666 0 99 3333333 99 7 99 4 7 3 1 44 1 2 222 1 11111111 111 4 4 8 11 11 11 0 2 66 8 4 9 4 1 9999999 0 0 0 0 0 0 0 111 0 4444444 4 8 8 8 000000000 8 0 88 000000 0 0 8 88 0 8 00 2 22 0 0 0000000 0 0 0 0 000 8 00 00000 0 8 8888888888 0 0 777777777777777777777777 333 3333 3 3 33 777 0 0 0 88 0 00 2 2 0 5 0 0 0 5 000 0 88 88 2 000 0 555555 55 88 0 2222222222222 0 0 0 0 0 8888888 0 0 2 8 0 4 0 88888 00 88 88 0 7 7 7 4 99 0 0 0 0 99 0 0 0 0 0 9 44444 0 99 0 0 0 7 7 7 7 7 7 22 7 66 7 7 99 000 7 7 0 4 888 0 0 0 0 444444 888
consensus : ACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTT---TTTTTTTT-TTCGTTTGTT--TG-TTTTTTT-TT-G-TTTTTTTTTT--T--T----------TG------CTTATTTTAATT---AATATTTGCATTGGAAGAG--GGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAANTGTTC---ATC------CT------TCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCC-T-AATCTA-T-TACCAA-CGGTT-TCATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGCTGAGA-GCATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------G--TTTGAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCCTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CATTGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGGAAAACAT-GCTAAAATAAGGCTGAATAAATA-T-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTN--ANGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTG--G-C-TGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGCG-GCNTA-CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAA-CAATAATATGCA-TTAGATCTAGTTTT------C------------TTTTTCCCATG--AGAG----AGCGAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGCACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAC--GCTGGTA-TTTT--AATGAAACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TACCAATC-ATATCTGA-GAA-AA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AAGT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAANAATAATAAAA-GTTATT-C-TTA-T--T-ACAA-ATTCAATTA-T-G--CAC-A-CCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--CAG-CCG-GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAACCCCGTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
Reference ( family-1261 ) : ACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTT-T-TTTTTTTT-TTCGTTTGTT--TG-TTTTTTT-TT-G-TTTTTTTTTT--T--T----------TG------CTTATTTTAATT---AATATTTGCATTGGAAGAG--GGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTNAANTGTTC---ATC------CT------TCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCC-T-AATCTA-T-TACCAA-CGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGCTGAGA-GCATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------G--TTTGAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCCTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CATTGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGGAAAACAT-GCTAAAATAAGGCTGAATAAATA-T-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTN--ANGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTG--G-C-TGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGCG-GCNTA-CGTGTAG-------TAGGCTTCTGG-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAA-CAATAATATGCA-TTAGATCTAGTTTT------C------------TTTTTCCCATG--AGAG----AGCGAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGCACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAC--GCTGGTA-TTTT--AATGAAACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TACCAATC-ATATCTGA-GAA-AA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AAGT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAANAATAATAAAA-GTTATT-C-TTA-T--T-ACAA-ATTCAATTA-T-G--CAC-A-CCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--CAG-CCG-GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAACCCCGTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
gi|1 : ACTGA-----GTATATAAGAAATAGTGATGGAGGC---------------------CGATTATTG-TG-TT---------G-TTGTTTTTTT--TGGT----------TG------TTTATTTTAATT---T-TATTTGCATTGGAAGAG--GGGACAC-AG--------GGATGTTGGCCCCAC-ACACTCCTATGCACT-ATGGACCAGTATTAACAGGCTGGTCATTCA-----CAACTC-CCCTTGAAGTTGAAATGATAGATCCAACACTTGTTATGAGGCT-GATTAGTGT-GGTTAGCTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAC-C---AGCCACACCTCGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGCGG-CG-TAGTCTAAATTGTTC---ATCATAAGTCC------TCCA-CTC-CAA---TAAATTCCCTACCTCTT-GAAGCCCC-TAAATCTA-T-TACCA------T-GCATATATATAAGAAGCCCTTG-AAATGACTGTGGGTGGGCTGAG--GCATA-TATAGTAAAATG--AACTAGAAAAGCGTATGTCTACTGCTG------G--TTTGAAT-CTGCC--TGGATATAGCAAGCTCC------------TGTAACTAACCCCC-------CCCTTTTTCG-TACAGAATA--CTTCTGTCAGTACTACAGAAGATTCAGCAATT-C-AT-CATTGTCAAGC-AA--AGGCC--AATAT--CAATGTATGCAGAGCTTG-TGAT-TTAAA--TTA---AATTGGAAAAAAT-GCT-AAATATGGCTGAATAAATA-T-ATACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTG--AAGGGGTGGTAAATCCAGCACTA-------CTGTTCTGTTGGCT-GGCTCTGAGTGACCC-G---------GGAGAG-ATTCA-GTCATTCTG--GTC-TGTCTC-AGTGGATGGGGTCTGGTGATGCCT-GTGTAAC--ATTTAGCCATCTTGTGTGACTGTG-ACGTA-CGTGTAGTACTAGTTAGGCTTCTGGTAATT-TC-TC-ACTCCTAAATTTTGCTTTGGGAGGCTCA-----TTTTACCTCGTGG-AAG----------AAA-CAATAATTTGCAGTTAGATCTAATTT--------------------TTTTCCCCATG--GGAGAGAAAGCGAGTGCGTGAAATTCTGTATGCACAAATGACCCATTTACCTCATATTT-CATACAAGCACCTCAAG-GCG-ATTTGCACACATTCCTAAAATTGTTGGTCATGGCGCCCGGACGATTGCCACTGGCTGGTA-TTTTTAAATGAAACG-ACATTTTCAAATCCAGGTGGGCCAATC--GAAGGATAAATGGA--TATTAATC-ATATCTGACGAACAA-TTCGTCCACGACAAAAAATA-GACCTCTAT-ACAA-T-AAGT-AGAATTATTTTAAT-TA--TATTAGTGA--AAGAATAATAAAA-GTTATTGCGTTA-T--T-AGAA-ATTC-ATCA-T-G--CAC-A-CCC-A-CATGTTATTGAACCTGCTTG-TATTCCGAATGGA--TGGG-TGAAAAGGAGGA-AAAA-CCGAATA-CA-CCCGGC-TTT-TAGTACTGC-TA--TAG-CCG-GCAGGC-CGAACCTGAA--CCGGATAAATTC-AAACCCCGTTTTTC---TCGTAAAAT--AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATA
gi|10 : AGTAT-GGTTAACTGTT-----GAGGTTGTGCTGGCTTG-GA---CATAGACAC-CTGCAGACGGAACTCGTAATCTACTTT-CGACCACGAAATAGTGAAGTCGA-CACTGCAG-AG-AAGTCTAAATTGCTTATAATT------CT------TCTACC-C-CAGATCTAAATTACA-ATATCAT-CATGCCCC-C-AATCTA-C-TGTCGA--GA-----ATGCATTTAAGAAGCTCTTG-AAATGACTGAAGGTGGACTGAAATGTATA-TATAATGGCAAA--CACTATAAAGGc
gi|11 : cattgaagttgaaattctacctgtagcgctgattgtcagaagaattacatgtACAATTGAAATGAG-ATG-TTTAAATCTAATCATTAGTGAGTAAG--TAATAAAA-AGTATT-C-TTA-TGTT-ACAAGATTCAATTA-T-GGGCAC-A-CCC-A-AATG-TATTCGACCTGATTGGTA-TCCG-ATGGAATTGGGGTGAAAAGGAGGA-AAAG-ACGAATA-CAACCCGGCGTTT-TA-TAGTGC-TA--TAG-CGC-GCAGGC-CG-ACCCG-A--CCG---AAA-TC-AAACGCCGTTCTTC---TCGTAAAATAGAAGTC-ATCGATTTTATATGCA-TGAAGA------T---AGATGATAa
gi|12 : atTAATAAAAAGTTATT-C-CTA-T--TCACAA-ATTCAATTA-T-G--CAC-A-CCCCA-CATG-TATTGAACCTACTTG-TA-TCTG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGAC-TTT-TA-TAGTGC-TA--CAA--CG-ACAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTG-ATCGATTTTATATGCA-T-AAAATACATGT---AGATGATAt
gi|13 : --T-ACAA-AATTAATTG-TTG--AGC-A-CCC-AGCATG-TA---GACCTACTTG--A--CCG-ATGGA--TGCG-TGGAAAGGAGGC-AAAT-CTGAATGTTA-CCCAGT-TTTATA-TAGTGCTTAACCAGCCCGCGCAGGCTCGAACCCG-ACCCCA---AAA-TG-GACACCCATTTTTCTCTTCGTAAAA-A-AAGTCAATCGATTTTATATGCATT-AAAA------TCAGAAATGAttat
gi|14 : -T--T-ACAA-ATTCAATTA-T-G--CACTC-CCC-A-CATG-TATTGAACCT---------------TGGA--TGGG-TGAAAAGGGGGA-ACAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-AA--CAG-CC--GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AGAA------T---AGATGATAatatt
gi|15 : tactctgttacatAGAGCTTG-TGATTTTAGACTTTAA----TTGGAAGACAT-GCTAAA-TACGGCTGAATAAATA-TTACACAACCAATA-G-A-GGCCGA-TTCCCAGTACAT-G-CGGTATAAATGCTTGTACCTGtt
gi|16 : CCCCCCCCTTTTCATTACAAAATATTCTTCTGTCAGT--------ACATTCAGCAA-A-AGATGTGTTGTCAAGCAAA--ATATCTCAATAT--CAATGTATGCAGAGCTTA-TG
gi|17 : ATAATAAAA-GTGA-T-C-TTA-T--TAACAA-ATTCAGTTA-T-G--CAC-A-CCCAA-CATG-TATTGAACCTACTTG-T-------ATGGA--TGGG-TGAAAAGGAGGA-AAAT-C
gi|18 : tgggAG-CCG--CAGGC-CGAACCCG-A--CCA---AAA-TAGAAACCCCCTTTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGAT
gi|19 : gCCCGTTTT-C---TCGTAAAATA-AAGTC-ATCGAATTTATATGCA-T-AAAA------T---AGATGATA
gi|2 : TTTTGGT--T----------TG------TTTATTTTTATTTATAGTATTTGCG--AGAAGAG--GGTACACGAG--------GGATGT--GCCTCACTACA---CAAT-CA--TATGT-CCAGTATTAACAGGCTGATCTATCAACTCACAACTT-CTCCTGAAGTTGAAATGATAGATCCAACAATTGTTATGAGGCTTGATTAGTGT-GGTTAGCTGCTAATTAGAGGT-------GTT---GAGGTC-TAAACAC-C---AGCCACGCCTCGTAGTCCACTCT--GACCACGAATTGGTGGGGTCGA-CACTGCGG-GC-TAGTCTAAATTGTTC---ATCATAAGTCC------TCCA-C-C-CAAAT-AACTTTCCCTACCTC-TTGAAACCCCCT-AAAATA-TATACCA------T-GCATATAT-TAAGAAGCCCTTGAAA-TGACTGTGGGTGGGCTGAG--GCATACTATAGTAAAATG--AACTAGAAAAGCGCATGTCTACTGCT-------GGTTTTGAAT-ATGCC--TGGATATAGCAAGCTCCTTGTAA-----------C--ACCCCCCCCCT-------TTTCA--ATAAAAT---CTTCTGTCA----------AAATTCAGAGA-TTC-AT-CA--ATCATGGAAAGCATAGC--AATATTGCA--GTATGC----CTTG-TGAT-TTAGACTTTTA--AATTG-AGAACAT--CTAAATT--GGCTGAATAATAA-C-ACAGAACCAATA-GGA-GACCGACTTTCCAGTACAT-GCTGGTAAAAAAGCTTGTACCTGCTGTGATATCCAATGCATAAACGACTTG--AAGGGGTGGTAAATCCAGCACTA-------CAGTTCTGTTGGCT-GGCTCTGAGTGACCCTG---------GG-GAGAATTCAGGTCATTCTGATG-C-TGTCT--AGTGGAT--GGTCTGGTG-T-CGTGGTGTGCA--ATTTAGCCATCTTCGGTGACTGCG---CTA-CCGGTAT-------TAGGCTTCTGG-AATTCTCATC-ATCTCTAAATTT---CTTGGGAGG--CATGCATTTTT-CCTCGTGGAAAGGAAAAGCAACAAA-CAATAATATGCA-TTAGATCTA----T------T------------TTTTTCCCAT---AGAG----AGCAAGAGCGTG-AATTCTG--TGC-C-AATGACCAA-TTGTC-AATAAAT-CAT--AAGCACCT-ATGCGCATATTTGCACACATT-CTAAAATTGTTGGTCATGAC---------A-TGC--------GGTATTTTT--AAT-AAACGAA-ATTTTC-AATCC---T--GCC-ATC--GAAGGA-AA----AATTAC--ATCAATATCTGA-GAA-AA-TTCG-CCAT--C----AATATGACCC-TATAACAATTAAAGT-AG-A-T-TTTTAATCTA--TATTAGTGA-TAATAATA--AAAA-GTTATT-C-TTATT--T-ACAA-ATTCAATTAGT-G--CAC-ACCCC-A-CATA-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGACGAGAAATACCGAATA-CA-CCCtt
gi|3 : CATATTGT-G-TTTTTTTTGTTTGTTTGTTGTTG-TTTGTTTGTT-G-TTTTTTTTTT--T--TGTGGGGGGGGTGTCAGGACTAATCTTA-TT---G-TATT-GAATTTGAAGAGAGGGGACCCGAGTACTGTGAGG-TGT--TCCTCACTACA-TTCTAT-CACTGATG--CCAGTATCA-CAGGCTG-TCCGTCA-----CAACTTTCCCTTGAAG--GAAATCATA------ACACT-GTTACGAGG-T-GATTAG-AT-GGT-AGCT-CTGGT-TGAGGT-------GTTTGAGAGCTAA-GAACATTC---AGC-ACA-CT-GTAGTCCACTTTATGACCACGAA-TTGTGGG-TCAAGCACTGCGGGCGGTA-TCT-AATTGTTC---ATT------CCATAGTCTTCA-C-CTCAAGT-TAA-TTCCC-TCGT--T-GAAGCACC-T-AATCTAAT-T--CA--------TCATAT---TCAGAAGCT--TGAAA-TGAGCGTGG-TGG-CTGAG--GCATA-GAAAA-AGCATATAAACTAGAAATGCATCTGTCCATT-CTAGTGAGGG--TTTAAGTCTTGACACTGG-T-TAGCA---TC-------GCTC-TTGCAACTAACCCCC--------CCTTTT--ATTACAAAATCT-CTTCTGTCA-T--------ACATT-AGAAA-A-G-AT--GTTAT-GAGCAAC--AGAAC--AAT----CAG-GT-TGCAGAGCTTAATGAT-TTGGACTTTAACGAGTTGGACA-CATTGCTAGA-TAAGGCTGAATAGATA---AT-CAACTTACA-A-AAGACTGG-TACCC-GTACATTG-TGTAATGA--GCTTGTAA-TGCATGGATATCAGATGCAGCAAGGACGTGGGAGGGGGTGTAGGA-CCAGCACTG-------AAAGTATGCTAGCTTGGCTC-GAG-GACCCTGTTATAGCCTGGAGAG-ATTC---------TG--T-C-CGTTTCCAGTG-AT-GG-TC-AATG--GCCT-GTG-ACATTATTTAGACTTCTTGG-CGGCTGCCCGCAAAGCGTGTAG-------TGGGCTTCTGG-AATT-TC-TCTGTTCCTTAGTTT---T----GAGG--CA-----TTTT--CTCGTGGAA
gi|4 : tgtaaactggcatagtgccccaatacctatcaatgctatggagaactctccTTCTGTCAGT--------AGATTCAGCAA-TTC-AT-CATTGACAAGCAAA--AG-CC--AATAT---AATGTATGCAGAGCTTG-TGATTTTAGACTTTAA---ATTGGAAAACAT-GCT-AAGTATGGCTGAATAAATATT-ACACAACCAATA-G-A-GACCGA-TTCCCAGTACAT-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGCATAAACGACTTA--AAGGGGTGGTAAATCCAGCACTAGTTCCACCAGTTCTGTTGGCT-GTCTCTGAGTGACCCTG---------GGAGAG-ATTCA-GTCATTCTG--G---TGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGATGACTGTG-GCTTA-CGTGTAG-------TAGGCTTCT-G-AATT-TC-TC-ATTTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAA-CAATAATATGCA-TTAGAgcatcacaccagaaaaaatgtgattaaattatt
gi|4 : AA-TTATC-AATAAATTCAT--AAGCACCT-AAGC-CGTATTTGC-CACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTA-TTTT--AATGAA-CG-A-ATTTTC-AACCCA--TTTGC--ATCCGAAAGGA-AA----T--TACCA--C-ATATCTGA-GAA-AAATTCG-CCACG-C----AATA-TACCCTTATAACAATT-AAAT-AA-TTT-TTTTAATCTA--TATTAGTGA-TAATAATA--GAAA-GTGGTT-C-TTATT--T-ACAA-ATTCAATTA-T-G--CAC-ACCCC-A-CATG-TATTGAACCTACTTG-TA-TCCG-ATGGA--TGGG-TGAAAAGGAGGA-AAAT-CCGAATA-CA-CCCGGC-TTT-TA-TAGTGC-TA--TAG-CC--GCAGGC-CGAACCCG-A--CCG---AAA-TC-AAA-CCCG-TTTTC---TCGTAAAATA-AAGTC-ATCGATTTTATATGCA-T-AAAA------T---AGATGATAataattatcaataaattcataagcacctaagccgtatttgccacattctaaaattgttggtcatggcgccctgagatgccatgctggtattttaatgaacgaattttcaacccatttgcatccgaaaggaaattaccacatatctgagaaaaattcgccacgcaatatacccttataacaattaaataatttttttaatctatattagtgataataatagaaagtggttcttatttacaaattcaattatgcacaccccacatgtattgaacctacttgtatccgatggatgggtgaaaaggaggaaaatccgaatacacccggcttttatagtgctatagccgcaggccgaacccgaccgaaatcaaacccgttttctcgtaaaataaagtcatcgattttatatgcataaaatagatgatat
gi|5 : ttctgtcagtagattcagcaattcatcattgacaagcaaaagccaatataatgtatgcagagcttgtgattttagactttaaattggaaaacatgctaagtatggctgaataaatattacacaaccaatagagaccgattcccagtacatgtggtataaatgcttgtacctgcttggatatccaatgcataaacgacttaaaggggtggtaaatccagcactagttccaccagttctgttggctgtctctgagtgaccctgggagagattcagtcattctggtgtctcagtggatgggtctggtgtgcctgtgtacaatttagccatcttggatgactgtggcttacgtgtagtaggcttctgaatttctcatttctaaatttcttgggaggcattttcctcgtggaaagaaacaataatatgcattagaatACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTTT--TTTTTTTT-TTCATTTGTT--TGTTTTTTTT-TT-G-TTTTTTTTTT--T--T----------TG------CTTATTTTAATT---AATATTTGCATTGGAAGAG--GGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC---ACC------CT------TCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCC-T-AATCTA-T-TACCAA-CGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA--CATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------G--TTTGAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAAGGCTGAATA---A-T-ACACAACCAATA-G-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCTt
gi|6 : ataaACTGAAATATGTA-ATAG--AATAGTGATGGAGGCATGTTTT-T-TTTTTTTT-TTCATTTGTT--TG-TTTTTTT-TT-GTTTTTTTTTTT--T--T----------TG------CTTATTTTAATT---AATATTTGCATTGGAAGAG--GGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAG-GTGGGTTAGTTGCTAAT-AGAGGT-------G-TTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACACCGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC---A-C------CT------TCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCC-T-AATCTA-T-TACCAA-CGGTTATTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA-ACATATTATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------G--TTTGAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CAT--TCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAAGGCTGAATA---A-T-ACACAACCAATAGG-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGC-TGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCT
gi|7 : ataaACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTT-T-TTTTTTTT-TCATTTTGTT--TG-TTTTTTT-TTTG-TTTTTTTTTT--T--T------------------CTTATTTTAATT---AATATTTGCATTGGAAGAG--GGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCT-TCA-----CAACTT-CCCTTGAAGTTGACATAATAGATCCAACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCATAAACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC---A-C------CT------TCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCC-T-AATCTA-T-TACCAACCGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGTGGGTTGAGA-ACATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------G--TTTGAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAA-CCCCTCCCTCTCCTTTTTTCATTACAAAATAT-CTTCTGTCAGT--------AGATTCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGA-CTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAAGGCTGAATA---A-T-ACACAACCAATA-G-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCT
gi|8 : ataaACTGAAATATGTATATAG--AATAGTGATGGAGGCATGTTTT--TTTTTTTTT-TTCATTTGTT--TG-TTTTTTT-TT-G--TTTTTTTTT--T--T----------TG------CTTATTTTAATT---AATATTTGCATTGGAAGAG--GGGACACGAGTAC---GAGGATGT--GCCCCACTACA-TCCTATGCACTTATG--CCAGTATTAACAGGCTGGTCTATCA-----CAACTT--CCTTGAAGTTGACATAATAGATCC-ACACTTGTTATGAGGCT-GATCAGTGT-GGTTAGTTGCTAAT-AGAGGT-------GTTTGAGAGGTCAT-AACAT-C---AGCCACAACTTGTAGTCCACTTT-TGACCACGAAATGGTGGGGTCGA-CACTGTGG-CG-TAGTCTTAAGTGTTC---A-C------CT------TCCA-C-C-CAAAT-TAAATTCCC-ACCTC-T-GAAGCCCC-T-AATCTA-T-TACCAA-CGGTT-TTATATATATAAGAAGCCCCTGAAAATGACTGTGGGT-GGTTGAGA-ACATA-TATAGTAGCATA--GACTAGAAAAGCGTATGTCTACTGCT-------G--TTTGAAT-TTGAC--TGGATATAGCAAGCTCCTTGTAAGCTCCTTGTGACTAACCCCCTCCCTCTCCTTTTTTCATTAC-AAATAT-CTTCTGTCAGT--------AGA-TCAGCAA-T-C-AT-CA-TGTCAAGCAAA--AGACC--AATAT--CAATGTATGCAGAGCTTA-TGATGTTAGACTTTAACGAATTGG-AAACAT-GCTAAAATAA-GCTGAATA---A-T-ACACAACCAATA-G-A-GACCGA-TTTCTA-TACAT-G-TTGTATAAATTCTTGTACCTGCTTGGATATCCAATGCATAAACAATTTT--ATGGGGTGGTGAATCCAGCACTA-------CAGTTCTGTTGACT-GGCT
gi|9 : taaGAATAAATAAT-ACACAACCAATA-G-A-GAC-GA-TTCCCAGTACAC-G-TGGTATAAATGCTTGTACCTGCTTGGATATCCAATGTATAAACAACTTG--AAGGGGTGGTAAATCCAGCAGTA-------CAGTTCTGTGGGCT-GGCTCTGAGTGACCCTG---------G-AGAG-ATTCA-GTCATTCTG--G-CCTGTCTC-AGTGGAT-GGGTCTGGTG-TGCCT-GTGTACA--ATTTAGCCATCTTGGGTGACTGTT-GCTTA-CGTGTAG-------TAGGCTTCTGG-AATT-CC-TC-ATCTCTAAATTT---CTTGGGAGG--CA-----TTTT-CCTCGTGGAAAG----------AAAACAATAATATGCA-TTAGATCTAGTTTTTTTTTTCTTTCTTTCTTTCTTTTTTCCATATTAGAG----AGCGAGAGCGTG-AAT--TG--TGC-C-AATGACCAA-TTATC-AATAAAT-CAT--AAGTACCT-AAGCGCGTATTTGCACACATT-CTAAAATTGTTGGTCATGGCGCCCTGA-GA-TGCCAT--GCTGGTA-TTTT--AATG-AACG-A-ATTTTC-AATCCA--T--GCC-ATC--GAAGGA-AA----A--TTGC-ATC-ATATCTGA-GAA-TA-TTCG-CCACG-C----AATA-GACCCTTATAACAATT-AATT-AG-ATT-TTTTAATCTA--TATTAGTGA-TAACAATAA