lowQualScore : 1111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 222 1 11111 1 333333 1 1 1 1 1 1 11 22 1111 222222222 1 333333333 11111 111111 111 1 11111111 11 1 2222222222222222222222222222222 11 11111 111111 66666666666666666666666666666666666666666666666666666666666666666666666 1 000000000000000000000000000000000000000000000000000000000000000 1 2222222222222222222222 33333333333 1111111111111 888888888888888888888888
lowQualScore : 2 22 5 5 5 666 1 333 7 66 4 4 1 5 6 77777 4 4 2 55 444444 2 5 2 3 0 7 6 55 0 3 3 3 8 33 555 66 3 11 3333 77 3 999999999 4 88 333333333 66 66 66666 111111 5 6 77 1 6 88 444 8 0 0 3 2 88888888 88 55 2 2 3 3 6666666666666666666666666666666 222 22 2 22 1 22 777 5 33 0 55555 0 111111 99999999999999999999999999999999999999999999999999999999999999999999999 44 9 3 888888888888888888888888888888888888888888888888888888888888888 0 5555 3333333333333333333333 00000000000 99999999999 2 6666666666666 77 999 2 5 2 55555 222222222222222222222222 8
lowQualScore : . .. . . . ... . ... . .. . . . . . ..... . . . .. ...... . . . . . . . .. . . . . . .. ... .. . .. .... .. . ......... . .. ......... .. .. ..... ...... . . .. . . .. ... . . . . . ........ .. .. . . . . ............................... ... .. . .. . .. ... . .. . ..... . ...... ....................................................................... .. . . ............................................................... . .... ...................... ........... ........... . ............. .. ... . . . ..... ........................ .
lowQualScore : 8 00 0 0 0 666 0 333 3 11 4 4 9 4 5 44444 0 0 0 55 555555 0 7 0 0 5 5 3 00 9 3 3 3 6 88 666 22 3 22 8888 22 3 666666666 5 77 888888888 99 22 77777 888888 2 7 77 7 7 22 000 0 8 8 3 9 66666666 55 33 5 3 3 3 0000000000000000000000000000000 000 88 0 88 9 99 000 3 66 8 66666 9 222222 33333333333333333333333333333333333333333333333333333333333333333333333 22 2 3 333333333333333333333333333333333333333333333333333333333333333 0 3333 6666666666666666666666 00000000000 55555555555 0 9999999999999 22 888 2 1 2 66666 111111111111111111111111 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGGCATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTNGCGTGTACATTTTT-AAATGA-AT-T-G--AACTAC------GTAT-CACTTTTGTTAT-ATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTGT-CATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTCA-AAA----CA-TTT-GAATTA-----AGGAAGTTAGGATTAGCAA-TTGT---------ATT--TAGAATCGAGGA-----TTACAACCT---T--ATGTC-GACC-ATTTTTCAG-CATCNA---CA-ATTAACTTCGCTGTATT-AAGGTTCAAT-T------AACATA-TTCAATA-CCTTTTTTCAACCTTATTTCAG-A-GTCGC---AA-AT--ATCA-TATT---G-----ACGTTGAATCAACGTCGG--ATTT-C--GA-CGTCGGTTCAA--TTAACA-A-ANTCAA--ACATC----TTTCAAC-----NTCANTCNGANNTNNGGNTTNTNCNNCGTCAGANTNCGACGTCGGCANNNTTCGAA-GT-G-T-----TCAA---A--ACAA-AATCAAACATCTTTCAACGTC-ANNACAATGTTGGTTCAACGTCGAAATTGCGTTGTTTCAACGTCAGCAATTTTCGAACGT--GTTCAATT-AACAAAATCAAACA----TC-----------T----------TTC-----------AAC-----------G-TCG-------------AAATGCGACGTTG--TTTC-AACG-T-----TGA---------A-C-----------ATGCCTGCTGG
Reference ( gi|1 ) : ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCTAAATTGACATTGGCATTAAATT-GGA-CTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGAACATTTAT-AGATGA-AT-T-G--AACTAC------GTAT-CACTTTTGTTAT-ATTTTGCTATGCAAAATTATACAGTGTCATAATTCATTTT--GTTGT-CATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--AAAGA-GATTC--AAA----CA-TTT-GAATTT-----GGGAAGCTAGGATTAGCAG-TTGT---------ATT--TAGAATCGAGGA-----TTACAACCT---T--ATGTC-GACT-ATTTTTCAG-CATCCA---CA-ATTAACTTTGCTGTATT-AAGGTTCAAT-T------ATCATG-TTCAATA-TCTTTTTTCAACCTAATTTCAG-A-GTCGCGTGAAGAT-CATCATTATT---G-----ACGTTGAATCAACGTCAG--ATTT-C--AA-CGTCGGTTCAA--TTAACA-A-ATTCAA--ACATC----TTTCAAC-----TTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT---T-----TTAA---A--ACAA-AATCAAACATCTTTCCACGTC-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--GTTCAATT-AACAAAATCAAACA----TC-----------T----------TTC-----------AAC-----------G-TCG-------------AAATGCGACGTTG--TTTC-AGCG-T-----TGA---------A-------------GTGCCTGCTGGG
gi|2 : TGTTTTTAAATTGACATTAG------ATG-GAA-CCCAT---GAGAAAAAGCTAAT--AAACT-AATTT-TACCTCGCATGTACATTTAT-AAATGA-AT-T-G--AACTAC------GTAT-CACTTTTGTTAT-ATTTTACTATGCAAAAT---ACAGTTTCATCGTTCATTTT--GTTGT-CATT---TAGTC-TTTT-ATGAAAA-AGACTAG-TTATTGTG--AAGGGGT--GAAGA-GATTC--AAAA---CA-TTT-GAATTA-----AGGACGTTAGGATTAGCAA-TTGT---------ATT--TTGAATCGATAA-----TTACAACCT---T--ATGTC-GCCC-ATTTTTCAT-CATCGA---CA-ATTAACTTTGCTGTGTTTAAGGTTCAAT-T------AACATG-TTCAATA-CCCTTTTTCAACTCTATTTCAA-A-GTCATATTAACAT-CATCATTATT---A-----ACGTTGAATCAACGTCAA--ATTT-C--AA-TGTCGGTTCAA--TTAACA-A-ATTCAA--ACATA----TTTTAAC-----GTCACTTCAACGTTAAAATCGGACGTTATTTTAACGTCAAATTTCAAAACGTCGA-------T-----TCAATT-A--GCAA-AATC-AACATCTTTCAACAT-----ACAATGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNTT-AACAAAATCAAACA----TCTTTCCACCTTAT----------TTC-----------AAC-----------G-TCG-------------AAATGCGACGTTC--TTTC-AATG-C-----TGA---------A-------------
gi|27 : tTGTTT-TAAATTGACGTTGGCATTAAATT-GGA-TTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TAtca
gi|16 : tTTTTTATCTTTAAATTGACATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-AT-TTG--AACTACATCATGGTATTCACTTT-GTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTCA-AAA----CA--TT-GAA--T-----AAGAAG-TAGGATTAGC
gi|15 : tTTTTTATCTTTAAATTGACATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-AT-TTG--AACTACATCATGGTATTCACTTT-GTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTCA-AAA----CA--TT-GAA--T-----AAGAAG-TAGGATTAGC
gi|14 : tTTTTTATCTTTAAATTGACATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-AT-TTG--AACTACATCATGGTATTCACTTT-GTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTCA-AAA----CA--TT-GAA--T-----AAGAAG-TAGGATTAGC
gi|3 : tATTGACATTAAATTTGAA-CCCAT---GAGAA---GCTAATTTGAACTTAATTTATACCTTATG---ACATTTTT-AAATGA-ATCT-GTTAACTAC------GTAT-CACTTTTGTTAT-ATTTTGCTATGCAAAATTATACAGT-TCATCAT--ATTTTTAGTTGT-CATT-TTTAATC-TTTTTATGAAATAAGAC-AA-TT-ATGTT--AAGGGAT--GAAGACGATTCAAAAA----CATTTT-GA---T-----GAGGAGTTAGGATTAGCAATTTGT---------ATT--
gi|6 : ctgttatttgtatctttaGCATTAAATT-AAA-CTCAT---AAGAAAAAGCTAAT--GAACT-AATTT-TATCTTGCATGTACATTGAT-AAATGA-AT-T-G--AACTAC------GTAT-AACTTTT----T-ATTTTGCTAC----AATT--------TCATAATTCATTTT--CTTTT-CACTATTTAATC-TTTTTA--AG-T-TGACTAA-ATGATGTG--AAGGAGTAAAAAAA-AATTA--AAA----CA-TTTGGAATTA-----AGGAATTTTAGATTTGCTA-TTGTA--------ATT--TAGAATCGAGGA-----TTGCAA-CT---T--ATGTC-GACC-A-ATTCCAG-CACCCA---CA-ATTAAC-TTGCTGTATT-AAGGTTCAAT-T------AACATC-TTCATTA--CCTTTTTCAA-CTAATTTCAGAA-GTCGCATCAACAT-AATCATTATT---A-----ACGTTGAATCAACGTCAG--ATTT-C--AATCGTCGGTTTAA--TTAACA-A-ATTCAA--ACGTA----TTTCAAC-----aatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgcgtcggttcaattaacaaaatcaacatctttcaacgtcatttcacacgtcgcaaatgcgacgttgtttcaaacgttgatcaacaacgtattgtggcctgctgg
gi|4 : ATTAA-TT-GAAGCCCAT---GAGAAAA-GCTAAT--GAAAT-AATTT-TACCTTTCATGCACATTTTT-AAATGACAT-T-G---ACTAT------GTAT-CACTTTTGTTAT-ATCTTGCTATGCAAAATTATACAGTTTCATCATTCA-TTT--ATTGT-CATTATTTAATT-TTT---TGAAAT-AGACTAATTTATTGTT--AAGGGGT--GAAGA-GATTCA-AAA----CA-TTT-GAATGA-----AGGAAGTTAGGATTAGCAA-TTGTTCA------ATTAATATACTTCAATACTTTTTTTCAACCT---T--ATTTCAGAGTGATGTT---G-AATCAAGGTCAGATT---TTCGACGT-----CGGTTCAAT-TTACAAAATCA------AACA-TCTTT----AACGTCGATTCAA-C-GTC----GAA-----------ATT---G------CGTTGTTTCAACGTCAG--ATTT-CCGAA-CGTCGGTTCAA--TTAACA-A-A--CAA--A-ATC----TTTCAAT-----GTCAgttgaaatccgacattgtttcagagtcaattttcagcatcggttcaattaacaaat
gi|19 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntGA-TTCAT---GAGAAAGAGTTAAT--GGACT-AATTT-TACCTTGCGTGTACATT-------------------AACTAC------GTAT-CACTTTTGTTGT-ATTT-GCTATGCAAAATTATA--GTTTTATAATTCATTTT--GTTGT-CATTATTTAATC-TTTTTATGAGAG-ATATTAA-ATAATGTG--AAGGGGT--AAAGA-GATTC--AAA----CA-Ttttcaa
gi|9 : TTAT-GAATCA-GT-T-G--AGCTAC------GTAT-CACGTTTGTTAT-ATTTTGCTATGCAAAATCATACATTTTCATAATTCATTTT--GTTGT-CATTACTTAATCTTTTTTATGGGAT-ATACTAA-TTAATGTG--AAGAGGT--AAAGA-GATTC--AAAAAATAA-TTT-GAATTA-----AGGAAGTTGTGAATAGCAA-TTGT---------ATT--TAGAATCGAGGA-----TTACAACCTTAAT--ATGTC-GACC-ATTTTTCAG-CATGTA---CA-ATTAACTTCACTGCATC-AAGGTTCGATGT------AACATA-TTCAATA-CATTTTTTCAACCTAATTTCAG-A-GTTGCATCAACAT-CATCAATATT---G-----ATG
gi|17 : TGA-AT-T-G--AACTAC------GTAT-CATTTTTGTTAT-GTTTTGCTATGCTAAATTATACAGTTTTATCATTCATTTT--ATTGT-CATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTATTGTT--AAGGGGT--GAAGA-AATTCT-AAA----CA-TTT-GAATTA-----AGGAAATTAGGATTAGCAA-TTGT---------ATT--TAATGTTAA--A-----TTAATACCC---TCAAT-----ACT--TTTTTCAA-Caacattgacataaaatccaac
gi|8 : AATTCATTTT--GTTGT-CATTATTTAATC-CTTTTATGAGAT-AGACTAA-TTAATTTG--AAGAGGT--AAA-A-GATTC--AAA----CA-TTT-GAATTTTTAAAAGGAAGTTAGGATTAGCAA-TTcttatttca
gi|7 : AATC-TTTTTATGAGAT-AGACTAA-TTATTGTG--AAGGA-T--GAGGA-TTTTT--AAAA---CA-GTT-GACTAA-----ACGAAGTAAGGATTAGTAA-TTGTATTAATTGTATT--TAGAACCGAGGA-----TTACAACCT---T--ATATC-GATC-ATTTCTCAGCCAT-CA---GA-ATCAACTTCGCTATATT-AAGGTTCAAT-T------AACATA-TTCAATA--CCTTTTTCAACCTTCTTTCAG-A-AACGCATCAACAT-TATCATTATT---G-----ATGCTAAATCAACGTCAG--ATTT-T--AA-CGTCAGTTCAA--AGAACA-A-ATTTAA--GCATA----TTTCAAC-----cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|21 : -TTT-GAATGA-----AGGAAGTTAAGATTAGCAG-TTGC---------ATT--TAgacatttgaatgtcgaaatcccacattatttcaaggtcaaatttcaacgtcgattcaat
gi|21 : GTTGCATTTAATATTCAAT-T------GATATA-CTCAATA-CATTTTTTCAACCTTATTTCAG-A-GT-------------------------G-----ACGTTGAATCAACGTCAG--ATTT-C--GA-CGTCGGTTCTA--TTAACA-A-AATCAA--atattcaattgatatactcaatacattttttcaaccttatttcagagtgacgttgaatcaacgtcagatttcgacgtcggttctattaacaaaatcaa
gi|17 : tttgaatgaaggaagttaagattagcaTGTATTTAATGTTAAAT-T------AATACC-CTCAATA--CTTTTTTCAACCTTATTTCA
gi|8 : tgaattgaactacgtatcatttttgttatgttttgctatgctaaattatacagttttatcattcattttattgtcattatttaatctttttatgagatagactaattattgttaaggggtgaagaaattctaaacatttgaattaaggaaattaggattagcaatTAGT-AAGGTTCAAT-T------AACATG-TTCAATA-CC
gi|22 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTT-AATGTTCAAT-T------AATATA-CTCAACACTTTTTTTTCAACCTCATTTCAG-A-GT-------------------------G-----ACGTTGAATCAACGTCAG--ACTT-C--GA-CATCGATTCAA--TTAACA-A-AATCAA--ACATC----Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|3 : atGGTTCAAT-T------AACAAA-ATCAACA-TC---TTTCAACGTCATTTCAC-ACGTCGC----AAATGCGACGTTGTTTCAA-----ACGTTG-ATCAAC
gi|4 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaatttgtattaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgcgtcGTTCAAT-T------AATATACTTCAATA-CTTTTTTTCAACCTTATTTCAG-A-GT-------------------------G-----ATGTTGAATCAAGGTCAG--ATTTTC--GA-CGTCGGTTCAA--TTTACA-A-AATCAA--ACATC----TTT-AAC-----GTCGATTCAACGTCGAAATTGCGTTGTTTCAACGTCAGATTTCCGAACGTCGGTTCAAT---T------------A--ACAA-A--CAAA-ATCTTTCAATGTC-Aaacgtattgtggcctgctgg
gi|12 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattaattgaagcccatgagaaaagctaatgaaataattttacctttcatgcacatttttaaatgacattgactatgtatcacttttgttatatcttgctatgcaaaattatacagtttcatcattcatttattgtcattatttaattttttgaaatagactaatttattgttaaggggtgaagagattcaaaacatttgaatgaaggaagttaggattagcaattTCAAT-T------GATATA-TTCAATT-ACTTTTTTCAACCTTATT-CAG-A-GT-----GACGGT----------------------GTTT--TCAACGTCAG--ATTT-C--GA-CGTCGGTTCAA--TTAACA-ATAATCAA--ACATCNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGT-----TCAATTTA--ACAA-AATCAAACATCTTTCtttcaa
gi|11 : aatgtaTCAAT-T------GATATA-TTCAATT-ACTTTTTTCAACCTTATT-CAG-A-GT-----GACGGT----------------------GTTT--TCAACGTCAG--ATTT-C--GA-CGTCGGTTCAA--TTAACA-ATAATCAA--ACATCNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGT-----TCAATTTA--ACAA-AATCAAACATCTTTCagcaacatttcaacgtcgaaatgcgacgtttttcaacgttgaatcaaacgtttaatatgcctgctgg
gi|10 : aatgtaTCAAT-T------GATATA-TTCAATT-ACTTTTTTCAACCTTATT-CAG-A-GT-----GACGGT----------------------GTTT--TCAACGTCAG--ATTT-C--GA-CGTCGGTTCAA--TTAACA-ATAATCAA--ACATCNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGT-----TCAATTTA--ACAA-AATCAAACATCTTTCagcaacatttcaacgtcgaaatgcgacgtttttcaacgttgaatcaaacgtttaatatgcctgctgg
gi|8 : aatgta-CATCAATGTT---GGTTCAACGTTGAAACAACGTCGC--ATTT-C--GA-CGagcaacatttcaacgtcgaaatgcgacgtttttcaacgttgaatcaaacgtttaatatgcctgctgg
gi|6 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATT---G-----ACTCTGAAACAATGTCGG--ATTT-C--AA-CGTTGtgcctgctg
gi|2 : gcattaaattaaactcataagaaaaagctaatgaactaattttatcttgcatgtacattgataaatgaattgaactacgtataactttttattttgctacaatttcataattcattttcttttcactatttaatctttttaagttgactaaatgatgtgaaggagtaaaaaaaaattaaaacatttggaattaaggaattttagatttgctattgtaatttagaatcgaggattgcaacttatgtcgaccaattccagcacccacaattaacttgctgtattaaggttcaattaacatcttcattacctttttcaactaatttcagaagtcgcatcaacataatcattattaacgttgaatcaacgtcagatttcaatcgtcggtttaattaacaaattcaaacgtatttTT---G-----ACGTTAAAATAACGTCCG--ATTT-T--AA-CGTTG----AA--GTGAC----GTTAAA--ATATG----TTTGAAT-----TTtttcagcatcggttcaattaacaaat
gi|4 : ttgtttttaaattgacattagatggaacccatgagaaaaagctaataaactaattttacctcgcatgtacatttataaatgaattgaactacgtatcacttttgttatattttactatgcaaaatacagtttcatcgttcattttgttgtcatttagtcttttatgaaaaagactagttattgtgaaggggtgaagagattcaaaacatttgaattaaggacgttaggattagcaattgtattttgaatcgataattacaaccttatgtcgcccatttttcatcatcgacaattaactttgctgtgtttaaggttcaattaacatgttcaataccctttttcaactctatttcaaagtcatattaacatcatcattattaacgttgaatcaacgtcaaatttcaatgtcggttcaattaacT---G-----ACGTTGAAACAACG-CA---ATTT-C--GA-CGTTGAATCGACGTTAAatttcaaaacgtcgattcaattagcaaaatcaacatctttcaacatacaatgttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaacaaaatcaaacatctttccaccttatttcaacgtcgaaatgcgacgttctttcaatgctgaatca
gi|22 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattaattgaagcccatgagaaaagctaatgaaataattttacctttcatgcacatttttaaatgacattgactatgtatcacttttgttatatcttgctatgcaaaattatacagtttcatcattcatttattgtcattatttaattttttgaaatagactaatttattgttaaggggtgaagagattcaaaacatttgaatgaaggaagttaggattagcaattgttcaattaatatacttcaatactttttttcaaccttatttcagagtgatgttgaatcaaggtcagattttcgacgtcggttcaatttacaaaatcaaacatctT---G-----ACGTTGATTCAACGTCAgatttccgaacgtcggttcaattaacaaacaaaatctttcaatgtcatttcaa
gi|21 : atttaatgttcaattaatatactcaacacttttttttcaacctcatttcagagT---G-----ACGTTGATTCAACGTCAgacttcgacatcgattcaattaacaaaatcaaacatct
gi|28 : tttgaatgaaggaagttaagattagcagttgcatttaatattcaattgatatactcaatacattttttcaaccttatttcagagT---G-----ACGTTCATTCAACGTTGA--ACT-----AA-CGTTGGTTgatttcgacgtcggttctattaacaaaatcaa
gi|12 : gtagaaaag-----ACGTTGAA-AAACGTCGC--ATTT-C--GA-CGTTGtgccagct
gi|11 : aatgtatcaattgatatattcaattacttttttcaaccttattcagagtgacggtgttttcaacgtcagatttcgacgtcggttcaattaacaataatcaaacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattttcgaacgtcggttcaatttaacaaaatcaaacatctttcagcaacattt-----ACGTTGAA-AAACGTCGC--ATTT-C--GA-CGTTGtgaatcaaacgtttaatatgcctgctgg
gi|10 : aatgtatcaattgatatattcaattacttttttcaaccttattcagagtgacggtgttttcaacgtcagatttcgacgtcggttcaattaacaataatcaaacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattttcgaacgtcggttcaatttaacaaaatcaaacatctttcagcaacattt-----ACGTTGAA-AAACGTCGC--ATTT-C--GA-CGTTGtgaatcaaacgtttaatatgcctgctgg
gi|7 : aatgtatcaattgatatattcaattacttttttcaaccttattcagagtgacggtgttttcaacgtcagatttcgacgtcggttcaattaacaataatcaaacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattttcgaacgtcggttcaatttaacaaaatcaaacatctttcagcaacatttGAATCAACTTC-GCTATAT-T--AA-----GGTTCAA--TTAACA-T-ATTCAAT-ACCTT----TTTCAACCTTCTTTCAGAAACGCATCAACATTATCATTATTGATGCTAAATCAACGTCAGATTTTAACGTCAG-T-----TCAAAG-A--ACAA-ATTTAAGCATATTTCAACGAC-Atgaatcaaacgtttaatatgcctgctgg
gi|18 : aatctttttatgagatagactaattattgtgaaggatgaggatttttaaaacagttgactaaacgaagtaaggattagtaattgtattaattgtatttagaaccgaggattacaaccttatatcgatcatttctcagccatcaTCAACGTCAA--TTTT-C--AA-CGTCGGTTCAA--ATAACA-A-AATCAA--ACATC----TTTCAAC-----GTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNGTTCA---ATTACAA-AATCAAACATCTTTCAACGTC-Atttgaatgtcgaaatcccacattatttcaaggtcaaatttcaacgtcgattcaat
gi|3 : tcgt-CGTCGGTTCAA--TTAACA-A-AATC-A--ACATC----TTTCAAC-----GTCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgctgg
gi|4 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaatttgtattaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgGTTCAA--TTAATATA-CTTCAAT-AC-TT----TTT---------TTCAACCTTATTTCAGAGTGATGTTGAATCAAGGTCAGATTTTCGACGTCGGTTCAATT---T---------------ACAA-AATCAAACATCTTTA-ACGTC------------GATTCAACGTCGAAATTGCGTTGTTTCAACGTCAGATTTCCGAACGTCG--GTTCAATT-AACAAA--CAAA-A----TC-----------T----------TTC-----------AAT-----------G-TCtttcacacgtcgcaaatgcgacgttgtttcaaacgttgatcaacaacgtattgtggcctgctgg
gi|12 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattaattgaagcccatgagaaaagctaatgaaataattttacctttcatgcacatttttaaatgacattgactatgtatcacttttgttatatcttgctatgcaaaattatacagtttcatcattcatttattgtcattatttaattttttgaaatagactaatttattgttaaggggtgaagagattcaaaacatttgaatgaaggaagttaggattagcaattTCAA--TTGATA-T-ATTCAATTACTTT----TTTCAAC-----CTTATTCAGAGTGACGGTGTTTTCAACGTCAGATTTCGACGTCGGTTCAATT-----------------------A--ACAATAATCAAACATCNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACA----TC-----------T----------TTCAGCAACATTTCAAC-----------G-TCG-------------AAATGCGACGTT---TTTC-AACG-T-----TGA---------ATCAAACGTTTAATATGCCTGCTGGatttcaa
gi|11 : aatgtaTCAA--TTGATA-T-ATTCAATTACTTT----TTTCAAC-----CTTATTCAGAGTGACGGTGTTTTCAACGTCAGATTTCGACGTCGGTTCAATT-----------------------A--ACAATAATCAAACATCNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACA----TC-----------T----------TTCAGCAACATTTCAAC-----------G-TCG-------------AAATGCGACGTT---TTTC-AACG-T-----TGA---------ATCAAACGTTTAATATGCCTGCTGG
gi|10 : aatgtaTCAA--TTGATA-T-ATTCAATTACTTT----TTTCAAC-----CTTATTCAGAGTGACGGTGTTTTCAACGTCAGATTTCGACGTCGGTTCAATT-----------------------A--ACAATAATCAAACATCNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACA----TC-----------T----------TTCAGCAACATTTCAAC-----------G-TCG-------------AAATGCGACGTT---TTTC-AACG-T-----TGA---------ATCAAACGTTTAATATGCCTGCTGG
gi|3 : aatgta---A--ACAA-AATCAA-CATCTTTCAACGTC-A
gi|18 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaatttgtattaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgcgtcggttcaatt---A--ACAA-AATCAAACATCTTTCAACGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--GTTCAATT--ACAAAATCAAACA----TC-----------T----------TTC-----------AAC-----------G-TCtttcacacgtcgcaaatgcgacgttgtttcaaacgttgatcaacaacgtattgtggcctgctgg
gi|6 : tcgttcaacgtcaattttcaacgtcggttcaaat--GTTTAATT-AACAAATTCAAACG----TA-----------T----------TTC-----------AAC-----------G-TTG-------------AAATCCGACATTG--TTTC-AGAG-T-----annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgctgg
gi|4 : gcattaaattaaactcataagaaaaagctaatgaactaattttatcttgcatgtacattgataaatgaattgaactacgtataactttttattttgctacaatttcataattcattttcttttcactatttaatctttttaagttgactaaatgatgtgaaggagtaaaaaaaaattaaaacatttggaattaaggaattttagatttgctattgtaatttagaatcgaggattgcaacttatgtcgaccaattccagcacccacaattaacttgctgtattaaggttcaattaacatcttcattacctttttcaactaatttcagaagtcgcatcaacataatcattattaacgttgaatcaacgtcagatttcaatcgtcg--GTTCAATT-TACAAAATCAAACA----TC-----------TTTAACGTCGATTC-----------AAC-----------G-TCG-------------AAAT-TG-CGTTG--TTTC-AACG-T-----caattttcagcatcggttcaattaacaaat
gi|7 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattaattgaagcccatgagaaaagctaatgaaataattttacctttcatgcacatttttaaatgacattgactatgtatcacttttgttatatcttgctatgcaaaattatacagtttcatcattcatttattgtcattatttaattttttgaaatagactaatttattgttaaggggtgaagagattcaaaacatttgaatgaaggaagttaggattagcaattgttcaattaatatacttcaatactttttttcaaccttatttcagagtgatgttgaatcaaggtcagattttcgacgtcg--GTTCAAAG-AACAAATTTAAGCA----TA-----------T----------TTC-----------AACGACATTTGAATG-TCG-------------AAATCCCACATTA--TTTC-AAGG-T-----CAA---------A-------------cagatttccgaacgtcggttcaattaacaaacaaaatctttcaatgtcatttcaa
gi|3 : aatctttttatgagatagactaattattgtgaaggatgaggatttttaaaacagttgactaaacgaagtaaggattagtaattgtattaattgtatttagaaccgaggattacaaccttatatcgatcatttctcagccatcagaatcaacttcgctatattaaggttcaattaacatattcaatacctttttcaaccttctttcagaaacgcatcaacattatcattattgatgctaaatcaacgtcagattttaacgtca--GTTCAATT-AACAAAATCAA-CA----TC-----------T----------TTC-----------AAC-----------G-TCATTTCACACGTCGCAAATGCGACGTTG--TTTCAAACG-T-----TGA---------tttcaacgtcgattcaat
gi|22 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaatttgtattaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgcgtcg--GTTCAATT-AATATACTC-AACACTTTTT-----------T----------TTC-----------AAC-----------C-TCATTTC---------AGA-GTGACGTTG--AATC-AACG-T-----tcaacaacgtattgtggcctgctgg
gi|22 : atttaatTTCAATT-AACAAAATCAAACA----TC-----------T----------cagacttcgacatcgattcaattaacaaaatcaaacatct
gi|6 : atttaatgttcaattaatatactcaacacttttttttcaacctcatttcagagtgacgttgaatcaacgtcagacttcgacatcgaAATTAAAC-------------------------------C-----------GAC-----------GATTG-------------AAATCTGACGTTG--ATTC-AACG-T-----TAA---------
gi|12 : gcattaaattaaactcataagaaaaagctaatgaactaattttatcttgcatgtacattgataaatgaattgaactacgtataactttttattttgctacaatttcataattcattttcttttcactatttaatctttttaagttgactaaatgatgtgaaggagtaaaaaaaaattaaaacatttggaattaaggaattttagatttgctattgtaatttagaatcgaggattgcaacttatgtcgaccaattccagcacccacaattaacttgctgtattaaggttcaattaacatcttcattacctttttcaactaatttcagaagtcgcatcaacataatcattaATTAAACG----TT-----------TGA--------TTC-----------AAC-----------G-TTG-------------AAA---AACGTCGCATTTC-GACG-T-----TGA---------A-------------ATG-TTGCTGaacaaattcaaacgtatttcaacgttgaaatccgacattgtttcagagtcaattttcagcatcggttcaattaacaaat
gi|11 : aatgtatcaattgatatattcaattacttttttcaaccttattcagagtgacggtgttttcaacgtcagatttcgacgtcggttcaattaacaataatcaaacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattttcgaacgtcggttcaatttaacaaaatcaaacatctttATTAAACG----TT-----------TGA--------TTC-----------AAC-----------G-TTG-------------AAA---AACGTCGCATTTC-GACG-T-----TGA---------A-------------ATG-TTGCTGatgcctgctgg
gi|10 : aatgtatcaattgatatattcaattacttttttcaaccttattcagagtgacggtgttttcaacgtcagatttcgacgtcggttcaattaacaataatcaaacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattttcgaacgtcggttcaatttaacaaaatcaaacatctttATTAAACG----TT-----------TGA--------TTC-----------AAC-----------G-TTG-------------AAA---AACGTCGCATTTC-GACG-T-----TGA---------A-------------ATG-TTGCTGatgcctgctgg
gi|26 : aatgtatcaattgatatattcaattacttttttcaaccttattcagagtgacggtgttttcaacgtcagatttcgacgtcggttcaattaacaataatcaaacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattttcgaacgtcggttcaatttaacaaaatcaaacatcttt-----------T----------TTC-----------AAC-----------G-TAA-------------AAGTGCAACGTTG--TTTC-AACGTT-----TGATCAATGTTGA-------------GTGCCCGCTGGatgcctgctgg
gi|22 : ccaaccttttttcaacggtgTC-----------GAT-----------G-TCG-------------AAGTCTGACGTTG--ATTC-AACG-TCACTCTGA---------A-------------ATG
gi|2 : atttaatgttcaattaatatactcaacacttttttttcaacctC-----------GAC-----------A-TTG-------------AAATTTGACGTTG--ATTC-AACG-T-----TAA---------ttcaattaacaaaatcaaacatct
gi|21 : ttgtttttaaattgacattagatggaacccatgagaaaaagctaataaactaattttacctcgcatgtacatttataaatgaattgaactacgtatcacttttgttatattttactatgcaaaatacagtttcatcgttcattttgttgtcatttagtcttttatgaaaaagactagttattgtgaaggggtgaagagattcaaaacatttgaattaaggacgttaggattagcaattgtattttgaatcgataattacaaccttatgtcgcccatttttcatcatcgacaattaactttgctgtgtttaaggttcaattaacatgttcaataccctttttcaactctatttcaaagtcatattaacatcatcattaC-----------GAC-----------G-TCG-------------AAATCTGACGTTG--ATTC-AACG-T-----gttcaattaacaaattcaaacatattttaacgtcacttcaacgttaaaatcggacgttattttaacgtcaaatttcaaaacgtcgattcaattagcaaaatcaacatctttcaacatacaatgttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaacaaaatcaaacatctttccaccttatttcaacgtcgaaatgcgacgttctttcaatgctgaatca
gi|8 : tttgaatgaaggaagttaagattagcagttgcatttaatattcaattgatatactcaatacattttttcaaccttatttcagagtgC-----------G-TCG-------------AAATGCGACGTTG--TTTC-AACG-T-----TGA---------ACCAACATTGAT--GTGCCTGCTGgttctattaacaaaatcaa
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TGTTGGTGAAAATGAAGTTTTGGGGAAACAAGGAAAAGCTACTAACGGTAAACAAATTATATACACTGTAATAAAATATATAAAAGATGGATATATAACATTTTATTTAAATGAATTTGCTAATGAGATATTTGAAAAATATCCAGGAATATTAGAATCATGATCTACAATAAATTCTCATAATTAAACTTAATTTTATTTGTGATTATGATTTTTTATTGATTTTAGAATGACTGTGTACTTCCTAGCACTGAGTCCTATGGCACTGAGCAGCACATGTTGATGTGATGTAGATTTAATTCAACATTGTGAAATACCTGAAATTATATCCCTGAAAGAACTGGAGAGGAGGTGGCTGAAGGCTTTGTGTTTGAAAAAAAAATCTGTTGTGACCGTTGACAATCCTTGGAAAAATATGCTAATATACTTGTAATCAATCTTGACAGGAGAAATTATCTGTTAGGATAAAGAATGC
Unaligned ( gi|13 ): TATGCCATGATGGTGATAAATGAAGTTGTGGGGAAACAAGGGAAAAGCTGCTATTTATTAAACAAATTATATAATGAAAAGGTAGATTAAGAGATAACATTTAATTTTTAAAAAAAAAAGTAGCTAACGAGATATTATGAAAAAATATCCAGAAATATTAGAATCATGATCTACAATAAATTCTCAAATACACTTTTTAATTGTGATTATTATTTTTCATTGACTTTATAATGTGTTCTTCCTATTAGTCCTATGGCAACTGG
Unaligned ( gi|20 ): AGAACTGGAGGAGGAGGTGGCTGAAGGCCTTGTGTTTTAACAAAAAAAATCTGTTGTAACCGTTGATAATCCTTGGAAAAAATATTCTAATATAATCAATCTTGACTGGAGAAAATTATCTGTTAGGGTAAATGAATGTTGT
Unaligned ( gi|23 ): ACATTTTATTCAAAATAATATTCAAAATAAAATCGCTAATGAAATATTATGAAAAATACACAGGAATACCTAGAATCATGATCTACAATATATTCTTAAATTACAG
Unaligned ( gi|24 ): AAGGCTTTGTGTTTGAAAAAAAATCTGTTGTTACCGTTGACAATATTTGGAAAAAAAAATATTTCTAATTTATCCCACCTCAGAC
Unaligned ( gi|25 ): AAAAGCTGCTAAAGTTAAACAAATTACAATGTATATATACTGTAATAAAATTATAAAAGATATAACATTTCATTTAAAATGAA
Unaligned ( gi|29 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Alignments
lowQualScore : 111111111111111111111111111111111111 11111111111111111111111111111 1111111111111111111111111111111111
lowQualScore : 111111 222 1 1 333333 1 1 1 11 1111111 111111111 11 111 333333333333 111 000000000000000000000000000000000000 11 111111 444444444444444444444 00000000000000000000000000000 1 5555555555555555555555555555555555555555555555555555 33 2 33333333333 99999999999 1 1111111111111111111111111111111111
lowQualScore : 444444 4 4 111 5 55 4 4 1 3 3 2 3 0 3 55 111111 0 6 0 0 8 6 44 0 3 3 3 7 22 44 3 3 77 555 77 3 6666666 4 4 777777777 11 99 111 000000000000 7 111 6 3 3 7 3 44 3 3 0 4 666666666666666666666666666666666666 6 666 4 4 33 0 5 1 777777 1 5 444444444444444444444 22 4 1 111 0 66666666666666666666666666666 7 5555555555555555555555555555555555555555555555555555 1 33 4 11111111111 55555555555 5 5 1111111111111111111111111111111111
lowQualScore : ...... . . ... . .. . . . . . . . . . .. ...... . . . . . . .. . . . . . .. .. . . .. ... .. . ....... . . ......... .. .. ... ............ . ... . . . . . .. . . . . .................................... . ... . . .. . . . ...... . . ..................... .. . . ... . ............................. . .................................................... . .. . ........... ........... . . ..................................
lowQualScore : 444444 4 4 000 7 55 0 0 0 7 8 0 6 9 6 00 444444 9 5 9 3 7 5 66 0 1 1 1 2 77 22 5 1 44 444 22 3 2222222 5 4 888888888 99 22 777 000000000000 5 777 7 7 6 3 6 44 6 6 8 0 777777777777777777777777777777777777 9 888 4 2 88 8 7 0 000000 0 3 111111111111111111111 00 1 0 333 8 33333333333333333333333333333 1 9999999999999999999999999999999999999999999999999999 8 00 0 77777777777 00000000000 0 0 3333333333333333333333333333333333
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTG------ACATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CA-ACCTTATTTCAG-AGTCGC----AT-AA---C---AT-C----AT---TATTGACGTTGAATCAACGTCAGATTTC--GA-CGTCGGTTCAATTAACAAATTCAA--ACATCTTTCAACGTC------ATTCCGANNTNCGGTNT--------TTTCGACGTCAGATTTCGACGTCGGCA---TTC--AA-----G----TTCAAT-AACAATAATCAAACATCTTTCAACGTCATNACAATGTTGGTTCA-ACGTCGCAAATGCG---TTGTTTC-AACG----TCAACAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATC-----------TTTCAGCAACATTTCAACGTCGAAATGCGACGTTGTTTCAACG-TTGAATCAAACGTTTAAC----------A--------TGCCTGCTGG
Reference ( family-1259 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTG------GCATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTNGCGTGTACATTTTT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CA-ACCTTATTTCAG-AGTCGC----A--AA---T---AT-C----A----TATTGACGTTGAATCAACGTCGGATTTC--GA-CGTCGGTTCAATTAACAAANTCAA--ACATCTTTCAACNTC------ANTCNGANNTNNGGNTT--------NTNCNNCGTCAGANTNCGACGTCGGCANNNTTC--GAAGT--G----TTCAA--AACAA-AATCAAACATCTTTCAACGTCANNACAATGTTGGTTCA-ACGTCGAAATTGCG---TTGTTTC-AACG----TCAGCAATTTTCGAACGT--GTTCAATT-AACAAAATCAAACATC-----------TTTC-----------AACGTCGAAATGCGACGTTGTTTCAACG-TTG------------AAC----------A--------TGCCTGCTGG
gi|1 : TGTTTCTAAATTGACATTG------GCATTAAATT-GGA-CTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGAACATTTAT-AGATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTGTCATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-TTT-GAATT-----TGGGAAGCTAGGATTAGCAG-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACTATTTTTCA----------G-CATCCA---CA-ATTAACTTTGCTGTA-TT-AAGGTTCAAT-TATCATGTTCAATATCTTTTTT-CA-ACCTAATTTCAG-AGTCGCGTGAA--GA---TC--AT-C----AT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACATCTTTCAACTTC------ANNNNNNNNNNNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNN--T----TTTAA--AACAA-AATCAAACATCTTTCCACGTCANNNNNNNNNNNNNNNN-NNNNNNNNNNNNNN---NNNNNNN-NNNN----NNNNNNNNNNNNNNNNNN--GTTCAATT-AACAAAATCAAACATC-----------TTTC-----------AACGTCGAAATGCGACGTTGTTTCAGCG-TTG------------AA-----------G--------TGCCTGCTGG
gi|10 : atgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAATTGATATATTCAATTACTTTTTTCAACCTT------ATTCAGAGTGACGGTGT--------TTTCAACGTCAGATTTCGACGTCGG-----TTC--AA----------TT-----AACAATAATCAAACATCNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNN---NNNNNNN-NNNN----NNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATC-----------TTTCAGCAACATTTCAACGTCGAAATGCGACGTT-TTTCAACG-TTGAATCAAACGTTTAAT----------A--------TGCCTGCTGGg
gi|11 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT------ATTCAGAGTGACGGTGT--------TTTCAACGTCAGATTTCGACGTCGG-----TTC--AA----------TT-----AACAATAATCAAACATCNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNN---NNNNNNN-NNNN----NNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATC-----------TTTCAGCAACATTTCAACGTCGAAATGCGACGTT-TTTCAACG-TTGAATCAAACGTTTAAT----------A--------TGCCTGCTGG
gi|12 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT------ATTCAGAGTGACGGTGT--------TTTCAACGTCAGATTTCGACGTCGG-----TTC--AA----------TT-----AACAATAATCAAACATCNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNN---NNNNNNN-NNNN----NNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATC-----------TTTCAGCAACATTTCAACGTCGAAATGCGACGTT-TTTCAACG-TTGAATCAAACGTTTAAT----------A--------TGCCTGCTGG
gi|14 : aatgtaTTTTTATCTTTAAATTG------ACATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|15 : tTTTTTATCTTTAAATTG------ACATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|16 : tTTTTTATCTTTAAATTG------ACATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|17 : tTGA-A-T-TG--AACTAC------GTA-TCATTTTTGTTA-TGTTTTGCTATGCTAAATTATACAGTTTTATCATTCATTTT--ATTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTATTGTT--AAGGGGT--GAAGA-AATTC-TAAA---CA-TTT-GAATT-----AAGGAAATTAGGATTAGCAA-TT---------GT--ATTTA
gi|17 : TGTA-TTTAATGTTAAAT-TAATACCCTCAATAC-TTTTTT-CA-ACCTTATTTCAatgttaaattaataccctcaatacttttttcaaccttatttca
gi|18 : tgaattgaactacgtatcatttttgttatgttttgctatgctaaattatacagttttatcattcattttattgtcattatttaatctttttatgagatagactaattattgttaaggggtgaagaaattctaaacatttgaattaaggaaattaggattagcaatTCAACGTCAATTTTC--AA-CGTCGGTTCAAATAACAAAATCAA--ACATCTTTCAACGTCGNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNN--G----TTCAAT-TACAA-AATCAAACATCTTTCAACGTCA
gi|19 : tcgtCAT---GAGAAAGAGTTAAT--GGACT-AATTT-TACCTTGCGTGTACATT-------------------AACTAC------GTA-TCACTTTTGTTG-TATTT-GCTATGCAAAATTATA--GTTTTATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAG-ATATTAA-ATAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgctgg
gi|2 : gattTTGTTTTTAAATTG------ACATTAGATG-GAA-CCCAT---GAGAAAAAGCTAAT--AAACT-AATTT-TACCTCGCATGTACATTTAT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTACTATGCAAAAT---ACAGTTTCATCGTTCATTTT--GTTG-TCATT---TAGTC-TTTT-ATGAAAA-AGACTAG-TTATTGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGACGTTAGGATTAGCAA-TT---------GT--ATTTTGAATCGATAATTACA--ACCT---TATGTCGCCCATTTTTCA----------T-CATCGA---CA-ATTAACTTTGCTGTGTTT-AAGGTTCAAT-TAACATGTTCAATACCCTTTTT-CA-ACTCTATTTCAA-AGTCAT----ATTAA---C---AT-C----ATCATTATTAACGTTGAATCAACGTCAAATTTC--AA-TGTCGGTTCAATTAACAAATTCAA--ACATATTTTAACGTC------ACTTCAACGTTAAAATC--------G---GACGTT--ATTTTAACGT---CAAATTTC--AAAAC--GTCGATTCAATTAGCAA-AATC-AACATCTTTCAACAT----ACAATGTTGGNNNN-NNNNNNNNNNNNNN---NNNNNNN-NNNN----NNNNNNNNNNNNNNNNNN--NNNNNNTT-AACAAAATCAAACATCTTTCCACCTTATTTC-----------AACGTCGAAATGCGACGTTCTTTCAATG-CTG------------AA
gi|21 : GTTGCA-TTTAATATTCAAT-TGATATACTCAATACATTTTTT-CA-ACCTTATTTCAG-AGT------------------------------------GACGTTGAATCAACGTCAGATTTC--GA-CGTCGGTTCTATTAACAAAATCAA--tca
gi|22 : tttgaatgaaggaagttaagattagca-TT-AATGTTCAAT-TAATATACTCAACACTTTTTTTTCA-ACCTCATTTCAG-AGT------------------------------------GACGTTGAATCAACGTCAGACTTC--GA-CATCGATTCAATTAACAAAATCAA--ACATCT
gi|26 : atACCTTTTTT-CA-ACGGTGTTTCAA----CGT----A--AA---A---GTGC----A---------ACGTTGTTTCAACGTTTGAT
gi|26 : cca-----------TTTC-----------AACGTAAAAGTGCAACGTTGTTTCAACGTTTG------------ATC----------AATGTTGAGTGCCCGCTGGcaatgttgagtgcccgctgg
gi|27 : ccaaccttttttcaacggtgTTTAAATTGACGTTGGCATTAAATT-GGA-TTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TA
gi|28 : ttgtGTAGAAAAGTGACGTTCATTCAACG-TTG------------AAC----------
gi|3 : TATTTGTATCTTTAA-TTG------ACATTAAATTTGAA-CCCAT---GAGAA---GCTAATTTGAACTTAATTTATACCTTATG---ACATTTTT-AAATGA-A-TCTGTTAACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAG-TTCATCAT--ATTTTTAGTTG-TCATT-TTTAATC-TTTTTATGAAATAAGAC-AA-TT-ATGTT--AAGGGAT--GAAGACGATTCAAAAA---CATTTT-GA--T-----GAGG-AGTTAGGATTAGCAATTT---------GT--ATTtaacgttggtttgccagct
gi|3 : ctgtTGTA-TT-AATGTTCA---TAATATATTCAATACTTTTTTT-AACACCTTGTCT----AG---C----A--G------------------------TGACGT--AATCA-CGT-AGATT-C--GA--GT-GATACAA---ACAATCTCAG--CCGT-TTGCAATTAA------ACTC-GATGTA-----T--------TTACGTCGTC-GAGTT----GTT--CATCGTTCTTGC-GTCGG----TTCAATTAACAA-AATCAA-CATCTTTCAACGTCAT-----------TTCACACGTCGCAAATGCGACGTTGTTTCAAACGTTGATCAACAAaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgcgtcggttcaattaacaaaatcaacatctttcaacgtcatttcacacgtcgcaaatgcgacgttgtttcaaacgttgatcaacaacgtattgtggcctgctgg
gi|4 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaattATTAA-TT-GAAGCCCAT---GAGAAAA-GCTAAT--GAAAT-AATTT-TACCTTTCATGCACATTTTT-AAATGACA-T-TG--A-CTAT------GTA-TCACTTTTGTTA-TATCTTGCTATGCAAAATTATACAGTTTCATCATTCA-TTT--ATTG-TCATTATTTAATT-TTT---TGAAAT-AGACTAATTTATTGTT--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATG-----AAGGAAGTTAGGATTAGCAA-TT---------GTTCAATTAATAT-----ACTTCAATACTT---TTTTTCAACCTTATTTCAGAGTGATGTTG-AATCAAGGTCAGATT---TTCGACGT------CGGTTCAAT-TTACAAAATCAA-ACATCTTT---A-ACGTCGATTCAA-CGTCG-----A--A----------------------ATTG-CGTTGTTTCAACGTCAGATTTCCGAA-CGTCGGTTCAATTAACAAA--CAA--A-ATCTTTCAATGTC------ATTcgtattgtggcctgctgg
gi|6 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt------GCATTAAATT-AAA-CTCAT---AAGAAAAAGCTAAT--GAACT-AATTT-TATCTTGCATGTACATTGAT-AAATGA-A-T-TG--AACTAC------GTA-TAACTTTT-----TATTTTGC------------TACAATTTCATAATTCATTTT--CTTT-TCACTATTTAATC-TTTTTA--AG-T-TGACTAA-ATGATGTG--AAGGAGTAAAAAAA-AATT--AAAA---CA-TTTGGAATT-----AAGGAATTTTAGATTTGCTA-TT---------GTA-ATTTAGAATCGAGGATTGCA--A-CT---TATGTCGACCA-ATTCCA----------G-CACCCA---CA-ATTAACTT-GCTGTA-TT-AAGGTTCAAT-TAACATCTTCATTACC-TTTTT-CA-A-CTAATTTCAGAAGTCGC----ATCAA---CATAAT-C----AT---TATTAACGTTGAATCAACGTCAGATTTC--AATCGTCGGTTTAATTAACAAATTCAA--ACGTATTTCAACGTTGA----AATCCGACATT--GTTT-----------CAGAGTCAATTTTCAGCATCGGtcaa
gi|7 : AATC-TTTTTATGAGAT-AGACTAA-TTATTGTG--AAGGA-T--GAGGA-TTTTT-AAAA---CA-GTT-GACTA-----AACGAAGTAAGGATTAGTAA-TTGTATTAATTGT--ATTTAGAACCGAGGATTACA--ACCT---TATATCGATCATTTCTCA----------GCCATC-A---GA-ATCAACTTCGCTATA-TT-AAGGTTCAAT-TAACATATTCAATACC-TTTTT-CA-ACCTTCTTTCAG-AAACGC----ATCAACATT---AT-C----AT---TATTGATGCTAAATCAACGTCAGATTTT--AA-CGTCAGTTCAAAGAACAAATTTAA--GCATATTTCAACGAC------ATTTGAATGTCGAAATCCCACATTATTTCAAGGTCAAATTTCAACGTCGttcaattaacaaat
gi|8 : ATTCATTTT--GTTG-TCATTATTTAATC-CTTTTATGAGAT-AGACTAA-TTAATTTG--AAGAGGT---AAAA-GATTC--AAA---CA-TTT-GAATTTTTAAAAGGAAGTTAGGATTAGCAA-TT---------attcaat
gi|8 : aTA-GT-AAGGTTCAAT-TAACATGTTCAATACCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|8 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGTCGAAATGCGACGTTGTTTCAACG-TTG------------AACCAACATTGATG--------TGCCTGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|9 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAT-GAATCA-G-T-TG--AGCTAC------GTA-TCACGTTTGTTA-TATTTTGCTATGCAAAATCATACATTTTCATAATTCATTTT--GTTG-TCATTACTTAATCTTTTTTATGGGAT-ATACTAA-TTAATGTG--AAGAGGT--AAAGA-GATTC-AAAAAATAA-TTT-GAATT-----AAGGAAGTTGTGAATAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCTTAATATGTCGACCATTTTTCA----------G-CATGTA---CA-ATTAACTTCACTGCA-TC-AAGGTTCGATGTAACATATTCAATACATTTTTT-CA-ACCTAATTTCAG-AGTTGC----ATCAA---C---AT-CATCAA----TATTGATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TGTTGGTGAAAATGAAGTTTTGGGGAAACAAGGAAAAGCTACTAACGGTAAACAAATTATATACACTGTAATAAAATATATAAAAGATGGATATATAACATTTTATTTAAATGAATTTGCTAATGAGATATTTGAAAAATATCCAGGAATATTAGAATCATGATCTACAATAAATTCTCATAATTAAACTTAATTTTATTTGTGATTATGATTTTTTATTGATTTTAGAATGACTGTGTACTTCCTAGCACTGAGTCCTATGGCACTGAGCAGCACATGTTGATGTGATGTAGATTTAATTCAACATTGTGAAATACCTGAAATTATATCCCTGAAAGAACTGGAGAGGAGGTGGCTGAAGGCTTTGTGTTTGAAAAAAAAATCTGTTGTGACCGTTGACAATCCTTGGAAAAATATGCTAATATACTTGTAATCAATCTTGACAGGAGAAATTATCTGTTAGGATAAAGAATGC
Unaligned ( gi|13 ): TATGCCATGATGGTGATAAATGAAGTTGTGGGGAAACAAGGGAAAAGCTGCTATTTATTAAACAAATTATATAATGAAAAGGTAGATTAAGAGATAACATTTAATTTTTAAAAAAAAAAGTAGCTAACGAGATATTATGAAAAAATATCCAGAAATATTAGAATCATGATCTACAATAAATTCTCAAATACACTTTTTAATTGTGATTATTATTTTTCATTGACTTTATAATGTGTTCTTCCTATTAGTCCTATGGCAACTGG
Unaligned ( gi|20 ): AGAACTGGAGGAGGAGGTGGCTGAAGGCCTTGTGTTTTAACAAAAAAAATCTGTTGTAACCGTTGATAATCCTTGGAAAAAATATTCTAATATAATCAATCTTGACTGGAGAAAATTATCTGTTAGGGTAAATGAATGTTGT
Unaligned ( gi|23 ): ACATTTTATTCAAAATAATATTCAAAATAAAATCGCTAATGAAATATTATGAAAAATACACAGGAATACCTAGAATCATGATCTACAATATATTCTTAAATTACAG
Unaligned ( gi|24 ): AAGGCTTTGTGTTTGAAAAAAAATCTGTTGTTACCGTTGACAATATTTGGAAAAAAAAATATTTCTAATTTATCCCACCTCAGAC
Unaligned ( gi|25 ): AAAAGCTGCTAAAGTTAAACAAATTACAATGTATATATACTGTAATAAAATTATAAAAGATATAACATTTCATTTAAAATGAA
Unaligned ( gi|29 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Alignments
lowQualScore : 111111 222 1 1 333333 1 1 1 11 1111111 111111111 11 111 333333333333 111 77777777777777777777777777 11 4444444444444444444444444444444444444444444 7777777777777777777777 2 66666666666666666666666666666666666666666666666666 1 22222
lowQualScore : 222222 4 4 111 5 55 4 4 0 3 2 2 3 0 3 55 111111 0 6 0 0 8 6 44 0 3 3 3 7 22 44 3 3 77 555 77 3 6666666 4 4 777777777 11 99 111 000000000000 7 111 6 3 3 7 3 66 4 4 1 4 88888888888888888888888888 666 4 2 33 0 5 2 4444444444444444444444444444444444444444444 1 66 1 0 55 555 3333333333333333333333 1 0 77777777777777777777777777777777777777777777777777 5 0 22 7777 5 4 1 4 3 777 0 4 11111 5
lowQualScore : ...... . . ... . .. . . . . . . . . . .. ...... . . . . . . .. . . . . . .. .. . . .. ... .. . ....... . . ......... .. .. ... ............ . ... . . . . . .. . . . . .......................... ... . . .. . . . ........................................... . .. . . .. ... ...................... . . .................................................. . . .. .... . . . . . ... . . ..... .
lowQualScore : 888888 4 4 000 7 55 0 0 7 7 4 0 6 9 6 00 444444 9 5 9 3 7 5 66 0 1 1 1 2 77 22 5 1 44 444 22 3 2222222 5 4 888888888 99 22 777 000000000000 5 777 7 7 6 3 6 66 0 0 8 4 88888888888888888888888888 888 4 8 88 8 7 5 2222222222222222222222222222222222222222222 0 11 8 2 55 777 5555555555555555555555 6 4 33333333333333333333333333333333333333333333333333 0 1 44 4444 0 0 1 0 3 444 2 4 11111 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CA-ACCTNATTTCAG-AGTCGCA-T-AA----C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--GA-CGTCGGTTCAATTAACAAATTCAA--ACATCTTTCAACGTC------------ATT------CCGAGNN-----NCG--G----TGT--TTTCAACGTCAAATT--TC--GACGTCG--G--TTCAA-TTCAATT----AACAATAATCAAACATCTTTCAACGTCAT-ACAATGTTGGTTCA-ACGTCGCAAATG---CGTTGTTTC-AACG----TCAACAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNC--ATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGT-TTAATGT-GCCTGCTGG
Reference ( family-1259 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CA-ACCTTATTTCAG-AGTCGCA-T-AA----C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--GA-CGTCGGTTCAATTAACAAATTCAA--ACATCTTTCAACGTC------------ATT------CCGANNT-----NCG--G----TNT--TTTCGACGTCAGATT--TC--GACGTCG--GCATTCAAGTTCAAT-----AACAATAATCAAACATCTTTCAACGTCATNACAATGTTGGTTCA-ACGTCGCAAATG---CGTTGTTTC-AACG----TCAACAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAAC--ATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGT-TTAACAT-GCCTGCTGG
gi|1 : TGTTTCTAAATTGACATTGGC------ATTAAATT-GGA-CTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGAACATTTAT-AGATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTGTCATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-TTT-GAATT-----TGGGAAGCTAGGATTAGCAG-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACTATTTTTCA----------G-CATCCA---CA-ATTAACTTTGCTGTA-TT-AAGGTTCAAT-TATCATGTTCAATATCTTTTTT-CA-ACCTAATTTCAG-AGTCGCG-T-GAAGATC---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACATCTTTCAACTTC------------ANN------NNNNNNN-----NNN--N----NNN--NNNNNNNNNNNNNNN--NN--NNNNNNN--NNNNNNNNNNNNNNTTTTAAAACAA-AATCAAACATCTTTCCACGTCA--NNNNNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNN-NNNN----NNNNNNNNNNNNNNNNNNNNGTTCAA-TTAACAAAATCAAACATC-------------TTTCA-ACGTCG-AAATGCGACGTTGTTTC-AGCGTTGAA----------------GT-GCCTGCTGG
gi|10 : atgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAATTGATATATTCAATTACTTTTTTCAACCTT------------ATT------CAGAGTG-----ACG--G----TGT--TTTCAACGTCAGATT--TC--GACGTCG--G--------TTCAATT----AACAATAATCAAACATCNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNN-NNNN----NNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAAC--ATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGT-TTAATAT-GCCTGCTGGg
gi|11 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT------------ATT------CAGAGTG-----ACG--G----TGT--TTTCAACGTCAGATT--TC--GACGTCG--G--------TTCAATT----AACAATAATCAAACATCNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNN-NNNN----NNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAAC--ATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGT-TTAATAT-GCCTGCTGG
gi|12 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT------------ATT------CAGAGTG-----ACG--G----TGT--TTTCAACGTCAGATT--TC--GACGTCG--G--------TTCAATT----AACAATAATCAAACATCNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNN-NNNN----NNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAAC--ATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGT-TTAATAT-GCCTGCTGG
gi|14 : aatgtaTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|15 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|16 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|17 : tTGA-A-T-TG--AACTAC------GTA-TCATTTTTGTTA-TGTTTTGCTATGCTAAATTATACAGTTTTATCATTCATTTT--ATTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTATTGTT--AAGGGGT--GAAGA-AATTC-TAAA---CA-TTT-GAATT-----AAGGAAATTAGGATTAGCAA-TT---------GT--ATTTA
gi|17 : TGTA-TTTAATGTTAAAT-TAATACCCTCAATAC-TTTTTT-CA-ACCTTATTTCAatgttaaattaataccctcaatacttttttcaaccttatttca
gi|18 : tgaattgaactacgtatcatttttgttatgttttgctatgctaaattatacagttttatcattcattttattgtcattatttaatctttttatgagatagactaattattgttaaggggtgaagaaattctaaacatttgaattaaggaaattaggattagcaatTTCAACGTCAATTT--TC--AACGTCG--G--TTCAA-----AT-----AACAA-AATCAAACATCTTTCAACGTCG-NNNNNNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNN-NNNN----NNNNNNNNNNNNNNNNNNNNGTTCAATT--ACAAAATCAAACATCTTTCAACGTC--A--NNN-NNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNNN--NNNNN-NNNNNGT-GCCTGCTGG
gi|18 : tcgTCAACGTCAATTTTC--AA-CGTCGGTTCAAATAACAAAATCAA--ACATCTTTCAACGTCGNNNNNNNNNNNNNN------NNNNNNN-----NNN--N----NNN--NNNNNNNNNNNNNNN--NN--NNNNNNN--NNNNNNNNGTTCAAT-----TACAA-AATCAAACATCTTTCAACGTCA
gi|19 : tcgtCAT---GAGAAAGAGTTAAT--GGACT-AATTT-TACCTTGCGTGTACATT-------------------AACTAC------GTA-TCACTTTTGTTG-TATTT-GCTATGCAAAATTATA--GTTTTATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAG-ATATTAA-ATAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgctgg
gi|2 : gattTTGTTTTTAAATTGAC------ATTAGATG-GAA-CCCAT---GAGAAAAAGCTAAT--AAACT-AATTT-TACCTCGCATGTACATTTAT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTACTATGCAAAAT---ACAGTTTCATCGTTCATTTT--GTTG-TCATT---TAGTC-TTTT-ATGAAAA-AGACTAG-TTATTGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGACGTTAGGATTAGCAA-TT---------GT--ATTTTGAATCGATAATTACA--ACCT---TATGTCGCCCATTTTTCA----------T-CATCGA---CA-ATTAACTTTGCTGTGTTT-AAGGTTCAAT-TAACATGTTCAATACCCTTTTT-CA-ACTCTATTTCAA-AGTCATATT-AACAT-C---ATCAT---TATTAACGTTGAATCAACGTCAAATTTC--AA-TGTCGGTTCAATTAACAAATTCAA--ACATATTTTAACGTC------------ACT------TCAACGTTAAAATCG--GACGTTAT--TTT-AACGTCAAATT--TCAAAACGTCG----ATTCAA-T----T-----AGCAA-AATC-AACATCTTTCAACAT----ACAATGTTGG---N-NNNNNNNNNNNN---NNNNNNNNN-NNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACAAAATCAAACATCTTTC--CACCTTATTTCA-ACGTCG-AAATGCGACGTTCTTTC-AATGCTGAATCA--
gi|21 : GTTGCA-TTTAATATTCAAT-TGATATACTCAATACATTTTTT-CA-ACCTTATTTCAG-AGT-----------------------------GACGTTGAATCAACGTCAGATTTC--GA-CGTCGGTTCTATTAACAAAATCAA--
gi|22 : tttgaatgaaggaagttaagattagca-TT-AATGTTCAAT-TAATATACTCAACACTTTTTTTTCA-ACCTCATTTCAG-AGT-----------------------------GACGTTGAATCAACGTCAGACTTC--GA-CATCGATTCAATTAACAAAATCAA--ACATCT
gi|26 : atCAACCTTTTTTCAACGGT--GTTTCA-ACGTAA-AAGTGCAACGTTGTTTC-AACGTTTGATC---AATGT-TGA--GT-GCCCGCTGG
gi|27 : cTTTAAATTGACGTTGGCATTAAATT-GGA-TTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TA
gi|28 : ttgtGTAG-AAAAGTGACGTTCATTC-AACGTTGAA-CT--AACGT-T
gi|3 : TATTTGTATCTTTAA-TTGAC------ATTAAATTTGAA-CCCAT---GAGAA---GCTAATTTGAACTTAATTTATACCTTATG---ACATTTTT-AAATGA-A-TCTGTTAACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAG-TTCATCAT--ATTTTTAGTTG-TCATT-TTTAATC-TTTTTATGAAATAAGAC-AA-TT-ATGTT--AAGGGAT--GAAGACGATTCAAAAA---CATTTT-GA--T-----GAGG-AGTTAGGATTAGCAATTT---------GT--ATTggtttgccagct
gi|3 : ctgtTGTA-TT-AATGTTCA---TAATATATTCAATACTTTTTTT-AACACCTT---------GTC----T-AG----C---AG---------TGACGT--AATCA-CGT-AGATT-C--GA--GT-GATACAA---ACAATCTCAG--CCGT-TTGCAA-----------------TT---------AAAC-----TCGATG----TAT--TTACGTCGTCGAGTTGTTC--ATCGTTCTTGCGTC--GGTTCAATT----AACAA-AATCAA-CATCTTTCAACGTCAT-----------TTCACACGTCGCAAATGCGACGTTGTTTCAAACGTTGATCAACAAaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgcgtcggttcaattaacaaaatcaacatctttcaacgtcatttcacacgtcgcaaatgcgacgttgtttcaaacgttgatcaacaacgtattgtggcctgctgg
gi|3 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaattCGTCGGTTCAATT-AACAAAATCAA-CATCTTTCAACGTC--ATTTCACACGTCGCAAATGCGACGTTGTTTCAAACGTTG-ATCAACAACGTATT---GTGGCCTGCTGGcgtattgtggcctgctgg
gi|4 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaatttgtattaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttg------ATTAA-TT-GAAGCCCAT---GAGAAAA-GCTAAT--GAAAT-AATTT-TACCTTTCATGCACATTTTT-AAATGACA-T-TG--A-CTAT------GTA-TCACTTTTGTTA-TATCTTGCTATGCAAAATTATACAGTTTCATCATTCA-TTT--ATTG-TCATTATTTAATT-TTT---TGAAAT-AGACTAATTTATTGTT--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATG-----AAGGAAGTTAGGATTAGCAA-TT---------GTTCAATTAATAT-----ACTTCAATACTT---TTTTTCAACCTTATTTCAGAGTGATGTTG-AATCAAGGTCAGATT---TTCGACGT------CGGTTCAAT-TTACAAAATCAA-ACATCTTT---A-ACGTCGATTCAA-CGTCG-----AA-----------------ATTG-CGTTGTTTCAACGTCAGATTTCCGAA-CGTCGGTTCAATTAACAAA--CAA--A-ATCTTTCAATGTC------------ATT------TCAA
gi|6 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntC------ATTAAATT-AAA-CTCAT---AAGAAAAAGCTAAT--GAACT-AATTT-TATCTTGCATGTACATTGAT-AAATGA-A-T-TG--AACTAC------GTA-TAACTTTT-----TATTTTGC------------TACAATTTCATAATTCATTTT--CTTT-TCACTATTTAATC-TTTTTA--AG-T-TGACTAA-ATGATGTG--AAGGAGTAAAAAAA-AATT--AAAA---CA-TTTGGAATT-----AAGGAATTTTAGATTTGCTA-TT---------GTA-ATTTAGAATCGAGGATTGCA--A-CT---TATGTCGACCA-ATTCCA----------G-CACCCA---CA-ATTAACTT-GCTGTA-TT-AAGGTTCAAT-TAACATCTTCATTACC-TTTTT-CA-A-CTAATTTCAGAAGTCGCA-TCAA----CATAATCAT---TATTAACGTTGAATCAACGTCAGATTTC--AATCGTCGGTTTAATTAACAAATTCAA--ACGTATTTCAACGTTGA----------AAT------CCGACAT---------------TGT--TTCAGA-GTCAATTT--TC--AGCATCG--G--TTCAA--TTAAC-----AA
gi|7 : gAATC-TTTTTATGAGAT-AGACTAA-TTATTGTG--AAGGA-T--GAGGA-TTTTT-AAAA---CA-GTT-GACTA-----AACGAAGTAAGGATTAGTAA-TTGTATTAATTGT--ATTTAGAACCGAGGATTACA--ACCT---TATATCGATCATTTCTCA----------GCCATC-A---GA-ATCAACTTCGCTATA-TT-AAGGTTCAAT-TAACATATTCAATACC-TTTTT-CA-ACCTTCTTTCAG-AAACGCA-TCAA----CATTATCAT---TATTGATGCTAAATCAACGTCAGATTTT--AA-CGTCAGTTCAAAGAACAAATTTAA--GCATATTTCAACGAC------------ATTTGAATGTCGAAAT-----CCC--A----CATTATTTCAAGGTCAAATT--TC--AACGTCG----ATTCAAat
gi|8 : ATTCATTTT--GTTG-TCATTATTTAATC-CTTTTATGAGAT-AGACTAA-TTAATTTG--AAGAGGT---AAAA-GATTC--AAA---CA-TTT-GAATTTTTAAAAGGAAGTTAGGATTAGCAA-TT---------t
gi|8 : aTA-GT-AAGGTTCAAT-TAACATGTTCAATACCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|8 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGTCG-AAATGCGACGTTGTTTC-AACGTTGAACCA--A-CAT-T-GATGT-GCCTGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|9 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAT-GAATCA-G-T-TG--AGCTAC------GTA-TCACGTTTGTTA-TATTTTGCTATGCAAAATCATACATTTTCATAATTCATTTT--GTTG-TCATTACTTAATCTTTTTTATGGGAT-ATACTAA-TTAATGTG--AAGAGGT--AAAGA-GATTC-AAAAAATAA-TTT-GAATT-----AAGGAAGTTGTGAATAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCTTAATATGTCGACCATTTTTCA----------G-CATGTA---CA-ATTAACTTCACTGCA-TC-AAGGTTCGATGTAACATATTCAATACATTTTTT-CA-ACCTAATTTCAG-AGTTGCA-TCAA----C---ATCATCAATATTGATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TGTTGGTGAAAATGAAGTTTTGGGGAAACAAGGAAAAGCTACTAACGGTAAACAAATTATATACACTGTAATAAAATATATAAAAGATGGATATATAACATTTTATTTAAATGAATTTGCTAATGAGATATTTGAAAAATATCCAGGAATATTAGAATCATGATCTACAATAAATTCTCATAATTAAACTTAATTTTATTTGTGATTATGATTTTTTATTGATTTTAGAATGACTGTGTACTTCCTAGCACTGAGTCCTATGGCACTGAGCAGCACATGTTGATGTGATGTAGATTTAATTCAACATTGTGAAATACCTGAAATTATATCCCTGAAAGAACTGGAGAGGAGGTGGCTGAAGGCTTTGTGTTTGAAAAAAAAATCTGTTGTGACCGTTGACAATCCTTGGAAAAATATGCTAATATACTTGTAATCAATCTTGACAGGAGAAATTATCTGTTAGGATAAAGAATGC
Unaligned ( gi|13 ): TATGCCATGATGGTGATAAATGAAGTTGTGGGGAAACAAGGGAAAAGCTGCTATTTATTAAACAAATTATATAATGAAAAGGTAGATTAAGAGATAACATTTAATTTTTAAAAAAAAAAGTAGCTAACGAGATATTATGAAAAAATATCCAGAAATATTAGAATCATGATCTACAATAAATTCTCAAATACACTTTTTAATTGTGATTATTATTTTTCATTGACTTTATAATGTGTTCTTCCTATTAGTCCTATGGCAACTGG
Unaligned ( gi|20 ): AGAACTGGAGGAGGAGGTGGCTGAAGGCCTTGTGTTTTAACAAAAAAAATCTGTTGTAACCGTTGATAATCCTTGGAAAAAATATTCTAATATAATCAATCTTGACTGGAGAAAATTATCTGTTAGGGTAAATGAATGTTGT
Unaligned ( gi|23 ): ACATTTTATTCAAAATAATATTCAAAATAAAATCGCTAATGAAATATTATGAAAAATACACAGGAATACCTAGAATCATGATCTACAATATATTCTTAAATTACAG
Unaligned ( gi|24 ): AAGGCTTTGTGTTTGAAAAAAAATCTGTTGTTACCGTTGACAATATTTGGAAAAAAAAATATTTCTAATTTATCCCACCTCAGAC
Unaligned ( gi|25 ): AAAAGCTGCTAAAGTTAAACAAATTACAATGTATATATACTGTAATAAAATTATAAAAGATATAACATTTCATTTAAAATGAA
Unaligned ( gi|29 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Alignments
lowQualScore : 111111 222 1 1 333333 1 1 1 11 1111111 111111111 11 111 333333333333 111 7777777777777777777777777 11 222222222222222222 111 5555555555555 1 8888888888888888888888888888888888888888888888888888 1
lowQualScore : 222222 4 4 111 5 55 4 4 0 3 2 2 3 0 3 55 111111 0 6 0 0 8 6 44 0 3 3 3 7 22 44 3 3 77 555 77 3 6666666 4 4 777777777 11 99 111 000000000000 7 111 6 3 4 8 4 0 3 4 1 5 2222222222222222222222222 999 5 0 0 88 2 3 2 66 4 777777777777777777 5 888 777 00 0 6666666666666 2 1111111111111111111111111111111111111111111111111111 2 5 0 1 55 5 4 1 4 3 777 0 88888 4
lowQualScore : ...... . . ... . .. . . . . . . . . . .. ...... . . . . . . .. . . . . . .. .. . . .. ... .. . ....... . . ......... .. .. ... ............ . ... . . . . . . . . . . ......................... ... . . . .. . . . .. . .................. . ... ... .. . ............. . .................................................... . . . . .. . . . . . ... . ..... .
lowQualScore : 888888 4 4 000 7 55 0 0 7 7 4 0 6 9 6 00 444444 9 5 9 3 7 5 66 0 1 1 1 2 77 22 5 1 44 444 22 3 2222222 5 4 888888888 99 22 777 000000000000 5 777 7 7 0 0 0 3 6 4 0 0 5555555555555555555555555 333 7 5 2 66 9 9 9 11 4 222222222222222222 0 222 222 66 2 9999999999999 0 0000000000000000000000000000000000000000000000000000 3 0 1 1 00 0 0 1 0 3 444 2 99999 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCA-TCAA----C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--A-TT------C--CG--AGTGACGG-CGT--TTTCAACGTCAAATTTC--GACGTCGGTTCAATT-A-A-T-------AACAATAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
Reference ( family-1259 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCA-T-AA----C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--GA-CGTCGGTTCAATTAACAAATTCAA--ACATCTTTCAACGTC--A-TT------C--CG--AGNNNCGG-TGT--TTTCAACGTCAAATTTC--GACGTCGGTTCAATTCA-ATT-------AACAATAATCAAACATCTTTCAACGTCATAC--AATGTTGGTTCAACGTCGCAAATGCGTTGTTTCAACGTCAA-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
gi|1 : TGTTTCTAAATTGACATTGGC------ATTAAATT-GGA-CTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGAACATTTAT-AGATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTGTCATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-TTT-GAATT-----TGGGAAGCTAGGATTAGCAG-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACTATTTTTCA----------G-CATCCA---CA-ATTAACTTTGCTGTA-TT-AAGGTTCAAT-TATCATGTTCAATATCTTTTTT-CAACCTAATTTCAG-AGTCGCG-T-GAAGATC---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACATCTTTCAACTTC--A-NN------N--NN--NNNNNNNN-NNN--NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNN-NNNNTTTTAAAACAA-AATCAAACATCTTTCCACGTCA-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNGTTCAA-TTAACAAAATCAAACATC-----------TTTCA-ACGTCG-AAATGCGACGTTGTTTC-AGCGTTGAA---------------GT-GCCTGCTGG
gi|10 : atgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAATTGATATATTCAATTACTTTTTTCAACCTT--A-TT------C--AG--AGTGACGG-TGT--TTTCAACGTCAGATTTC--GACGTCGGTTCAATT-------------AACAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGGg
gi|11 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT--A-TT------C--AG--AGTGACGG-TGT--TTTCAACGTCAGATTTC--GACGTCGGTTCAATT-------------AACAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGG
gi|12 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT--A-TT------C--AG--AGTGACGG-TGT--TTTCAACGTCAGATTTC--GACGTCGGTTCAATT-------------AACAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGG
gi|14 : aatgtaTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|15 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|16 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|17 : tTGA-A-T-TG--AACTAC------GTA-TCATTTTTGTTA-TGTTTTGCTATGCTAAATTATACAGTTTTATCATTCATTTT--ATTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTATTGTT--AAGGGGT--GAAGA-AATTC-TAAA---CA-TTT-GAATT-----AAGGAAATTAGGATTAGCAA-TT---------GT--ATTTA
gi|17 : TGTA-TTTAATGTTAAAT-TAATACCCTCAATA-CTTTTTT-CAACCTTATTTCAatgttaaattaataccctcaatacttttttcaaccttatttca
gi|18 : tgaattgaactacgtatcatttttgttatgttttgctatgctaaattatacagttttatcattcattttattgtcattatttaatctttttatgagatagactaattattgttaaggggtgaagaaattctaaacatttgaattaaggaaattaggattagcaatTTCAACGTCAATTTTC--AACGTCGGTTCAA---A---T-------AACAA-AATCAAACATCTTTCAACGTCGNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNGTTCAATT--ACAAAATCAAACATCTTTCAACGTCA--NNN-NNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNNN--NNNNNNNNNNGT-GCCTGCTGG
gi|19 : tcgCAT---GAGAAAGAGTTAAT--GGACT-AATTT-TACCTTGCGTGTACATT-------------------AACTAC------GTA-TCACTTTTGTTG-TATTT-GCTATGCAAAATTATA--GTTTTATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAG-ATATTAA-ATAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-T
gi|2 : gattTTGTTTTTAAATTGAC------ATTAGATG-GAA-CCCAT---GAGAAAAAGCTAAT--AAACT-AATTT-TACCTCGCATGTACATTTAT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTACTATGCAAAAT---ACAGTTTCATCGTTCATTTT--GTTG-TCATT---TAGTC-TTTT-ATGAAAA-AGACTAG-TTATTGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGACGTTAGGATTAGCAA-TT---------GT--ATTTTGAATCGATAATTACA--ACCT---TATGTCGCCCATTTTTCA----------T-CATCGA---CA-ATTAACTTTGCTGTGTTT-AAGGTTCAAT-TAACATGTTCAATACCCTTTTT-CAACTCTATTTCAA-AGTCATATT-AACAT-C---ATCAT---TATTAACGTTGAATCAACGTCAAATTTC--AA-TGTCGGTTCAATTAACAAATTCAA--ACATATTTTAACGTC--ACTT------CAACGTTAAAATCGGACGTTATTTTAACGTCAAATTTCAAAACGTCG-----ATTCA-ATT-------AGCAA-AATC-AACATCTTTCAA---CATAC--AATGTTGG---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNTTAACAAAATCAAACATCTTTCCACCTTATTTCA-ACGTCG-AAATGCGACGTTCTTTC-AATGCTGAATCA--
gi|21 : GTTGCA-TTTAATATTCAAT-TGATATACTCAATACATTTTTT-CAACCTTATTTCAG-AGT-----------------------------GACGTTGAATCAACGTCAGATTTC--GA-CGTCGGTTCTATTAACAAAATCAA--
gi|22 : tttgaatgaaggaagttaagattagca-TT-AATGTTCAAT-TAATATACTCAACACTTTTTTTTCAACCTCATTTCAG-AGT-----------------------------GACGTTGAATCAACGTCAGACTTC--GA-CATCGATTCAATTAACAAAATCAA--ACATCT
gi|26 : atCAACCTTTTTTCAACGGTGTTTCA-ACGTAA-AAGTGCAACGTTGTTTC-AACGTTTGATC---AATGTTGA--GT-GCCCGCTGG
gi|27 : cTTTAAATTGACGTTGGCATTAAATT-GGA-TTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TA
gi|28 : ttgtGTAG-AAAAGTGACGTTCATTC-AACGTTGAA-CT--AACG-TTGGTTT-GCCAGCT
gi|3 : TATTTGTATCTTTAA-TTGAC------ATTAAATTTGAA-CCCAT---GAGAA---GCTAATTTGAACTTAATTTATACCTTATG---ACATTTTT-AAATGA-A-TCTGTTAACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAG-TTCATCAT--ATTTTTAGTTG-TCATT-TTTAATC-TTTTTATGAAATAAGAC-AA-TT-ATGTT--AAGGGAT--GAAGACGATTCAAAAA---CATTTT-GA--T-----GAGG-AGTTAGGATTAGCAATTT---------GT--ATT
gi|3 : ctgtGTTCA--TAATATATTCAAT-ACTTTTTTTAACACC--T-TG------T--CT--AG---CAG-TG--------ACGT--AATC-----ACGTAGATTCGAGTGATACA-------AACAATC-TCAGCCGT-TTGCAA--TTAAACTCGATGT--ATTTA-CGTCGT---CGAGTTGTT-CATCGT--------TCTTG--CGTCGGTTCAATT-AACAAAATCAA-CATCTTTCAACGTCATTTCACACGTCGCAAATGCGACGTTGTTTCAAACGTTG-ATCAACAACG--TATTGTGGCCTGCTGGaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgcgtcggttcaattaacaaaatcaacatctttcaacgtcatttcacacgtcgcaaatgcgacgttgtttcaaacgttgatcaacaacgtattgtggcctgctgg
gi|4 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaatttgtattaat------ATTAA-TT-GAAGCCCAT---GAGAAAA-GCTAAT--GAAAT-AATTT-TACCTTTCATGCACATTTTT-AAATGACA-T-TG--A-CTAT------GTA-TCACTTTTGTTA-TATCTTGCTATGCAAAATTATACAGTTTCATCATTCA-TTT--ATTG-TCATTATTTAATT-TTT---TGAAAT-AGACTAATTTATTGTT--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATG-----AAGGAAGTTAGGATTAGCAA-TT---------GTTCAATTAATAT-----ACTTCAATACTT---TTTTTCAACCTTATTTCAGAGTGATGTTG-AATCAAGGTCAGATT---TTCGACGT------CGGTTCAAT-TTACAAAATCAA-ACATCTTT---AACGTCGATTCAA-CGTCG-----AA-----------------ATTG-CGTTGTTTCAACGTCAGATTTCCGAA-CGTCGGTTCAATTAACAAA--CAA--A-ATCTTTCAATGTC--A-TT------T--CA--A
gi|6 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntC------ATTAAATT-AAA-CTCAT---AAGAAAAAGCTAAT--GAACT-AATTT-TATCTTGCATGTACATTGAT-AAATGA-A-T-TG--AACTAC------GTA-TAACTTTT-----TATTTTGC------------TACAATTTCATAATTCATTTT--CTTT-TCACTATTTAATC-TTTTTA--AG-T-TGACTAA-ATGATGTG--AAGGAGTAAAAAAA-AATT--AAAA---CA-TTTGGAATT-----AAGGAATTTTAGATTTGCTA-TT---------GTA-ATTTAGAATCGAGGATTGCA--A-CT---TATGTCGACCA-ATTCCA----------G-CACCCA---CA-ATTAACTT-GCTGTA-TT-AAGGTTCAAT-TAACATCTTCATTACC-TTTTT-CAA-CTAATTTCAGAAGTCGCA-TCAA----CATAATCAT---TATTAACGTTGAATCAACGTCAGATTTC--AATCGTCGGTTTAATTAACAAATTCAA--ACGTATTTCAACGTTGAA-AT------C--CG--A----CAT-TG---TTTCAGAGTCAATTTTC--AGCATCGG-----TTCA-ATT-------AACAA
gi|7 : gAATC-TTTTTATGAGAT-AGACTAA-TTATTGTG--AAGGA-T--GAGGA-TTTTT-AAAA---CA-GTT-GACTA-----AACGAAGTAAGGATTAGTAA-TTGTATTAATTGT--ATTTAGAACCGAGGATTACA--ACCT---TATATCGATCATTTCTCA----------GCCATC-A---GA-ATCAACTTCGCTATA-TT-AAGGTTCAAT-TAACATATTCAATACC-TTTTT-CAACCTTCTTTCAG-AAACGCA-TCAA----CATTATCAT---TATTGATGCTAAATCAACGTCAGATTTT--AA-CGTCAGTTCAAAGAACAAATTTAA--GCATATTTCAACGAC--A-TTTGAATGT--CG--AAATCCCA-CATTATTTCAAGGTCAAATTTC--AACGTCGATTCAATat
gi|8 : ATTCATTTT--GTTG-TCATTATTTAATC-CTTTTATGAGAT-AGACTAA-TTAATTTG--AAGAGGT---AAAA-GATTC--AAA---CA-TTT-GAATTTTTAAAAGGAAGTTAGGATTAGCAA-TT---------
gi|8 : aTA-GT-AAGGTTCAAT-TAACATGTTCAATACCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|8 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGTCG-AAATGCGACGTTGTTTC-AACGTTGAACCA--A-CATT-GATGT-GCCTGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|9 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAT-GAATCA-G-T-TG--AGCTAC------GTA-TCACGTTTGTTA-TATTTTGCTATGCAAAATCATACATTTTCATAATTCATTTT--GTTG-TCATTACTTAATCTTTTTTATGGGAT-ATACTAA-TTAATGTG--AAGAGGT--AAAGA-GATTC-AAAAAATAA-TTT-GAATT-----AAGGAAGTTGTGAATAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCTTAATATGTCGACCATTTTTCA----------G-CATGTA---CA-ATTAACTTCACTGCA-TC-AAGGTTCGATGTAACATATTCAATACATTTTTT-CAACCTAATTTCAG-AGTTGCA-TCAA----C---ATCATCAATATTGATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TGTTGGTGAAAATGAAGTTTTGGGGAAACAAGGAAAAGCTACTAACGGTAAACAAATTATATACACTGTAATAAAATATATAAAAGATGGATATATAACATTTTATTTAAATGAATTTGCTAATGAGATATTTGAAAAATATCCAGGAATATTAGAATCATGATCTACAATAAATTCTCATAATTAAACTTAATTTTATTTGTGATTATGATTTTTTATTGATTTTAGAATGACTGTGTACTTCCTAGCACTGAGTCCTATGGCACTGAGCAGCACATGTTGATGTGATGTAGATTTAATTCAACATTGTGAAATACCTGAAATTATATCCCTGAAAGAACTGGAGAGGAGGTGGCTGAAGGCTTTGTGTTTGAAAAAAAAATCTGTTGTGACCGTTGACAATCCTTGGAAAAATATGCTAATATACTTGTAATCAATCTTGACAGGAGAAATTATCTGTTAGGATAAAGAATGC
Unaligned ( gi|13 ): TATGCCATGATGGTGATAAATGAAGTTGTGGGGAAACAAGGGAAAAGCTGCTATTTATTAAACAAATTATATAATGAAAAGGTAGATTAAGAGATAACATTTAATTTTTAAAAAAAAAAGTAGCTAACGAGATATTATGAAAAAATATCCAGAAATATTAGAATCATGATCTACAATAAATTCTCAAATACACTTTTTAATTGTGATTATTATTTTTCATTGACTTTATAATGTGTTCTTCCTATTAGTCCTATGGCAACTGG
Unaligned ( gi|20 ): AGAACTGGAGGAGGAGGTGGCTGAAGGCCTTGTGTTTTAACAAAAAAAATCTGTTGTAACCGTTGATAATCCTTGGAAAAAATATTCTAATATAATCAATCTTGACTGGAGAAAATTATCTGTTAGGGTAAATGAATGTTGT
Unaligned ( gi|23 ): ACATTTTATTCAAAATAATATTCAAAATAAAATCGCTAATGAAATATTATGAAAAATACACAGGAATACCTAGAATCATGATCTACAATATATTCTTAAATTACAG
Unaligned ( gi|24 ): AAGGCTTTGTGTTTGAAAAAAAATCTGTTGTTACCGTTGACAATATTTGGAAAAAAAAATATTTCTAATTTATCCCACCTCAGAC
Unaligned ( gi|25 ): AAAAGCTGCTAAAGTTAAACAAATTACAATGTATATATACTGTAATAAAATTATAAAAGATATAACATTTCATTTAAAATGAA
Unaligned ( gi|29 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Alignments
lowQualScore : 111111 222 1 1 333333 1 1 1 11 1111111 111111111 11 111 333333333333 111 3333333333333333 11 4444444444444444444444444 1111111111 22222 6666666666666666666666666666666666666666666666666666 1 111 1
lowQualScore : 222222 4 4 111 5 55 4 4 0 3 2 2 3 0 3 55 111111 0 6 0 0 8 6 44 0 3 3 3 7 22 44 3 3 77 555 77 3 6666666 4 4 777777777 11 99 111 000000000000 7 111 6 3 4 8 4 0 77 4 2 5 6666 1 1111111111111111 77 5 0 0 88 1 1 2 66 33 0000000000000000000000000 777 9999999999 88888 8 6666666666666666666666666666666666666666666666666666 2 5 0 1 55 5 4 1 4 3 222 1 4 4
lowQualScore : ...... . . ... . .. . . . . . . . . . .. ...... . . . . . . .. . . . . . .. .. . . .. ... .. . ....... . . ......... .. .. ... ............ . ... . . . . . . .. . . . .... . ................ .. . . . .. . . . .. .. ......................... ... .......... ..... . .................................................... . . . . .. . . . . . ... . . .
lowQualScore : 888888 4 4 000 7 55 0 0 7 7 4 0 6 9 6 00 444444 9 5 9 3 7 5 66 0 1 1 1 2 77 22 5 1 44 444 22 3 2222222 5 4 888888888 99 22 777 000000000000 5 777 7 7 0 0 0 3 77 4 6 0 2222 4 5555555555555555 99 7 5 2 66 0 0 9 11 44 8888888888888888888888888 222 4444444444 00000 4 3333333333333333333333333333333333333333333333333333 3 0 1 1 00 0 0 1 0 3 333 1 8 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCATCAA---C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--ATTCCGA-GTGA----CG-------G-CGTT-TTTCAACGTCAAATTTC--GACGTCGGTTCAA----------TTAACA---ACAATAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
Reference ( family-1259 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCATCAA---C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--ATTCCGA-GTGA----CG-------G-CGT--TTTCAACGTCAAATTTC--GACGTCGGTTCAA----------TTAATA---ACAATAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
gi|1 : TGTTTCTAAATTGACATTGGC------ATTAAATT-GGA-CTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGAACATTTAT-AGATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTGTCATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-TTT-GAATT-----TGGGAAGCTAGGATTAGCAG-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACTATTTTTCA----------G-CATCCA---CA-ATTAACTTTGCTGTA-TT-AAGGTTCAAT-TATCATGTTCAATATCTTTTTT-CAACCTAATTTCAG-AGTCGCGTGAAGATC---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACATCTTTCAACTTC--ANNNNNN-NNNN----NN-------N-NNN--NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNTTTTAA-A---ACAA-AATCAAACATCTTTCCACGTCA-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNGTTCAA-TTAACAAAATCAAACATC-----------TTTCA-ACGTCG-AAATGCGACGTTGTTTC-AGCGTTGAA---------------GT-GCCTGCTGG
gi|10 : atgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAATTGATATATTCAATTACTTTTTTCAACCTT--ATTCAGA-GTGA----CG-------G-TGT--TTTCAACGTCAGATTTC--GACGTCGGTTCAA----------TTAA------CAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGGg
gi|11 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT--ATTCAGA-GTGA----CG-------G-TGT--TTTCAACGTCAGATTTC--GACGTCGGTTCAA----------TTAA------CAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGG
gi|12 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT--ATTCAGA-GTGA----CG-------G-TGT--TTTCAACGTCAGATTTC--GACGTCGGTTCAA----------TTAA------CAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGG
gi|14 : aatgtaTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|15 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|16 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|17 : tTGA-A-T-TG--AACTAC------GTA-TCATTTTTGTTA-TGTTTTGCTATGCTAAATTATACAGTTTTATCATTCATTTT--ATTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTATTGTT--AAGGGGT--GAAGA-AATTC-TAAA---CA-TTT-GAATT-----AAGGAAATTAGGATTAGCAA-TT---------GT--ATTTA
gi|17 : TGTA-TTTAATGTTAAAT-TAATACCCTCAATAC-TTTTTT-CAACCTTATTTCAatgttaaattaataccctcaatacttttttcaaccttatttca
gi|18 : tgaattgaactacgtatcatttttgttatgttttgctatgctaaattatacagttttatcattcattttattgtcattatttaatctttttatgagatagactaattattgttaaggggtgaagaaattctaaacatttgaattaaggaaattaggattagcaatTTCAACGTCAATTTTC--AACGTCGGTTCA-------------AATA---ACAA-AATCAAACATCTTTCAACGTCGNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNGTTCAATT--ACAAAATCAAACATCTTTCAACGTCA--NNN-NNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNNN--NNNNNNNNNNGT-GCCTGCTGG
gi|19 : tcgCAT---GAGAAAGAGTTAAT--GGACT-AATTT-TACCTTGCGTGTACATT-------------------AACTAC------GTA-TCACTTTTGTTG-TATTT-GCTATGCAAAATTATA--GTTTTATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAG-ATATTAA-ATAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-T
gi|2 : gattTTGTTTTTAAATTGAC------ATTAGATG-GAA-CCCAT---GAGAAAAAGCTAAT--AAACT-AATTT-TACCTCGCATGTACATTTAT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTACTATGCAAAAT---ACAGTTTCATCGTTCATTTT--GTTG-TCATT---TAGTC-TTTT-ATGAAAA-AGACTAG-TTATTGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGACGTTAGGATTAGCAA-TT---------GT--ATTTTGAATCGATAATTACA--ACCT---TATGTCGCCCATTTTTCA----------T-CATCGA---CA-ATTAACTTTGCTGTGTTT-AAGGTTCAAT-TAACATGTTCAATACCCTTTTT-CAACTCTATTTCAA-AGTCATATTAACATC---ATCAT---TATTAACGTTGAATCAACGTCAAATTTC--AA-TGTCGGTTCAATTAACAAATTCAA--ACATATTTTAACGTC--ACTTCAACGTTAAAATCG-------GACGTTATTTTAACGTCAAATTTCAAAACGTCGATTCAA----------TTAGCA---A----AATC-AACATCTTTCAA---CATAC--AATGTTGG---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNTTAACAAAATCAAACATCTTTCCACCTTATTTCA-ACGTCG-AAATGCGACGTTCTTTC-AATGCTGAATCA--
gi|21 : GTTGCA-TTTAATATTCAAT-TGATATACTCAATACATTTTTT-CAACCTTATTTCAG-AGT---------------------------GACGTTGAATCAACGTCAGATTTC--GA-CGTCGGTTCTATTAACAAAATCAA--
gi|22 : tttgaatgaaggaagttaagattagca-TT-AATGTTCAAT-TAATATACTCAACACTTTTTTTTCAACCTCATTTCAG-AGT---------------------------GACGTTGAATCAACGTCAGACTTC--GA-CATCGATTCAATTAACAAAATCAA--ACATCT
gi|26 : atCAACCTTTTTTCAACGGTGTTTCA-ACGTAA-AAGTGCAACGTTGTTTC-AACGTTTGATC---AATGTTGA--GT-GCCCGCTGG
gi|27 : cTTTAAATTGACGTTGGCATTAAATT-GGA-TTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TA
gi|28 : ttgtGTAG-AAAAGTGACGTTCATTC-AACGTTGAA-CT--AACG-TTGGTTT-GCCAGCT
gi|3 : TATTTGTATCTTTAA-TTGAC------ATTAAATTTGAA-CCCAT---GAGAA---GCTAATTTGAACTTAATTTATACCTTATG---ACATTTTT-AAATGA-A-TCTGTTAACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAG-TTCATCAT--ATTTTTAGTTG-TCATT-TTTAATC-TTTTTATGAAATAAGAC-AA-TT-ATGTT--AAGGGAT--GAAGACGATTCAAAAA---CATTTT-GA--T-----GAGG-AGTTAGGATTAGCAATTT---------GT--ATT
gi|3 : ctgtGTTCA--TAATATATTCAAT-ACTTTTTTTAACACC--TTGTCTA-G-------CA-------G-TG--------ACGT--AATC-----ACGTAGATTCGA----------GTGATACAAACAATC-TCAGCCGT-TTGCAA--TTAAACTCGATGT--ATTTA-CGTCGT---CGAGTTGTT-CATCGT--------TCTTG--CGTCGGTTCAATT-AACAAAATCAA-CATCTTTCAACGTCATTTCACACGTCGCAAATGCGACGTTGTTTCAAACGTTG-ATCAACAACG--TATTGTGGCCTGCTGGaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgcgtcggttcaattaacaaaatcaacatctttcaacgtcatttcacacgtcgcaaatgcgacgttgtttcaaacgttgatcaacaacgtattgtggcctgctgg
gi|4 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaatttgtattaat------ATTAA-TT-GAAGCCCAT---GAGAAAA-GCTAAT--GAAAT-AATTT-TACCTTTCATGCACATTTTT-AAATGACA-T-TG--A-CTAT------GTA-TCACTTTTGTTA-TATCTTGCTATGCAAAATTATACAGTTTCATCATTCA-TTT--ATTG-TCATTATTTAATT-TTT---TGAAAT-AGACTAATTTATTGTT--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATG-----AAGGAAGTTAGGATTAGCAA-TT---------GTTCAATTAATAT-----ACTTCAATACTT---TTTTTCAACCTTATTTCAGAGTGATGTTG-AATCAAGGTCAGATT---TTCGACGT------CGGTTCAAT-TTACAAAATCAA-ACATCTTT---AAC------------GTCGATTCAA---C---GTCGA---AATTG-CGTTGTTTCAACGTCAGATTTCCGAA-CGTCGGTTCAATTAACAAA--CAA--A-ATCTTTCAATGTC--ATTTCAA-
gi|6 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntC------ATTAAATT-AAA-CTCAT---AAGAAAAAGCTAAT--GAACT-AATTT-TATCTTGCATGTACATTGAT-AAATGA-A-T-TG--AACTAC------GTA-TAACTTTT-----TATTTTGC------------TACAATTTCATAATTCATTTT--CTTT-TCACTATTTAATC-TTTTTA--AG-T-TGACTAA-ATGATGTG--AAGGAGTAAAAAAA-AATT--AAAA---CA-TTTGGAATT-----AAGGAATTTTAGATTTGCTA-TT---------GTA-ATTTAGAATCGAGGATTGCA--A-CT---TATGTCGACCA-ATTCCA----------G-CACCCA---CA-ATTAACTT-GCTGTA-TT-AAGGTTCAAT-TAACATCTTCATTACC-TTTTT-CAA-CTAATTTCAGAAGTCGCATCAA---CATAATCAT---TATTAACGTTGAATCAACGTCAGATTTC--AATCGTCGGTTTAATTAACAAATTCAA--ACGTATTTCAACGTTGAAATCCGA--------------------CATTGTTTCAGAGTCAATTTTC--AGCATCGGTTCAA----------TTAACA---A
gi|7 : gAATC-TTTTTATGAGAT-AGACTAA-TTATTGTG--AAGGA-T--GAGGA-TTTTT-AAAA---CA-GTT-GACTA-----AACGAAGTAAGGATTAGTAA-TTGTATTAATTGT--ATTTAGAACCGAGGATTACA--ACCT---TATATCGATCATTTCTCA----------GCCATC-A---GA-ATCAACTTCGCTATA-TT-AAGGTTCAAT-TAACATATTCAATACC-TTTTT-CAACCTTCTTTCAG-AAACGCATCAA---CATTATCAT---TATTGATGCTAAATCAACGTCAGATTTT--AA-CGTCAGTTCAAAGAACAAATTTAA--GCATATTTCAACGAC--ATT-TGA-ATGT----CGAAATCCCA-CATTATTTCAAGGTCAAATTTC--AACGTCGATTCAA----------Tat
gi|8 : ATTCATTTT--GTTG-TCATTATTTAATC-CTTTTATGAGAT-AGACTAA-TTAATTTG--AAGAGGT---AAAA-GATTC--AAA---CA-TTT-GAATTTTTAAAAGGAAGTTAGGATTAGCAA-TT---------
gi|8 : aTA-GT-AAGGTTCAAT-TAACATGTTCAATACCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|8 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGTCG-AAATGCGACGTTGTTTC-AACGTTGAACC---AACA-TTGATGT-GCCTGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|9 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAT-GAATCA-G-T-TG--AGCTAC------GTA-TCACGTTTGTTA-TATTTTGCTATGCAAAATCATACATTTTCATAATTCATTTT--GTTG-TCATTACTTAATCTTTTTTATGGGAT-ATACTAA-TTAATGTG--AAGAGGT--AAAGA-GATTC-AAAAAATAA-TTT-GAATT-----AAGGAAGTTGTGAATAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCTTAATATGTCGACCATTTTTCA----------G-CATGTA---CA-ATTAACTTCACTGCA-TC-AAGGTTCGATGTAACATATTCAATACATTTTTT-CAACCTAATTTCAG-AGTTGCATCAA---C---ATCATCAATATTGATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TGTTGGTGAAAATGAAGTTTTGGGGAAACAAGGAAAAGCTACTAACGGTAAACAAATTATATACACTGTAATAAAATATATAAAAGATGGATATATAACATTTTATTTAAATGAATTTGCTAATGAGATATTTGAAAAATATCCAGGAATATTAGAATCATGATCTACAATAAATTCTCATAATTAAACTTAATTTTATTTGTGATTATGATTTTTTATTGATTTTAGAATGACTGTGTACTTCCTAGCACTGAGTCCTATGGCACTGAGCAGCACATGTTGATGTGATGTAGATTTAATTCAACATTGTGAAATACCTGAAATTATATCCCTGAAAGAACTGGAGAGGAGGTGGCTGAAGGCTTTGTGTTTGAAAAAAAAATCTGTTGTGACCGTTGACAATCCTTGGAAAAATATGCTAATATACTTGTAATCAATCTTGACAGGAGAAATTATCTGTTAGGATAAAGAATGC
Unaligned ( gi|13 ): TATGCCATGATGGTGATAAATGAAGTTGTGGGGAAACAAGGGAAAAGCTGCTATTTATTAAACAAATTATATAATGAAAAGGTAGATTAAGAGATAACATTTAATTTTTAAAAAAAAAAGTAGCTAACGAGATATTATGAAAAAATATCCAGAAATATTAGAATCATGATCTACAATAAATTCTCAAATACACTTTTTAATTGTGATTATTATTTTTCATTGACTTTATAATGTGTTCTTCCTATTAGTCCTATGGCAACTGG
Unaligned ( gi|20 ): AGAACTGGAGGAGGAGGTGGCTGAAGGCCTTGTGTTTTAACAAAAAAAATCTGTTGTAACCGTTGATAATCCTTGGAAAAAATATTCTAATATAATCAATCTTGACTGGAGAAAATTATCTGTTAGGGTAAATGAATGTTGT
Unaligned ( gi|23 ): ACATTTTATTCAAAATAATATTCAAAATAAAATCGCTAATGAAATATTATGAAAAATACACAGGAATACCTAGAATCATGATCTACAATATATTCTTAAATTACAG
Unaligned ( gi|24 ): AAGGCTTTGTGTTTGAAAAAAAATCTGTTGTTACCGTTGACAATATTTGGAAAAAAAAATATTTCTAATTTATCCCACCTCAGAC
Unaligned ( gi|25 ): AAAAGCTGCTAAAGTTAAACAAATTACAATGTATATATACTGTAATAAAATTATAAAAGATATAACATTTCATTTAAAATGAA
Unaligned ( gi|29 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Alignments
lowQualScore : 111111 222 1 1 333333 1 1 1 11 1111111 111111111 11 111 333333333333 111 3333333333333333 11 3333333333333333333333333333 111111111 4444 6666666666666666666666666666666666666666666666666666 1 111 1
lowQualScore : 222222 4 4 111 5 55 4 4 0 3 2 2 3 0 3 55 111111 0 6 0 0 8 6 44 0 3 3 3 7 22 44 3 3 77 555 77 3 6666666 4 4 777777777 11 99 111 000000000000 7 111 6 3 4 8 4 0 3 4 2 5 6666 1 1111111111111111 77 5 0 0 88 1 1 2 66 33 1111111111111111111111111111 777 777777777 888 6666 6666666666666666666666666666666666666666666666666666 2 5 0 1 55 5 4 1 4 3 222 1 4 4
lowQualScore : ...... . . ... . .. . . . . . . . . . .. ...... . . . . . . .. . . . . . .. .. . . .. ... .. . ....... . . ......... .. .. ... ............ . ... . . . . . . . . . . .... . ................ .. . . . .. . . . .. .. ............................ ... ......... ... .... .................................................... . . . . .. . . . . . ... . . .
lowQualScore : 888888 4 4 000 7 55 0 0 7 7 4 0 6 9 6 00 444444 9 5 9 3 7 5 66 0 1 1 1 2 77 22 5 1 44 444 22 3 2222222 5 4 888888888 99 22 777 000000000000 5 777 7 7 0 0 0 3 6 4 6 0 2222 4 5555555555555555 99 7 5 2 66 0 0 9 11 44 6666666666666666666666666666 222 888888888 888 9999 3333333333333333333333333333333333333333333333333333 3 0 1 1 00 0 0 1 0 3 333 1 8 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCATCAA---C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--ATTCCGA-GTGA----CG-------G-CGTT-TTTCAACGTCAAATTTC--GACGTCGGTTCAA---------TTAACA---A---TAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
Reference ( family-1259 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCATCAA---C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--ATTCCGA-GTGA----CG-------G-CGTT-TTTCAACGTCAAATTTC--GACGTCGGTTCAA---------TTAACA---ACAATAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
gi|1 : TGTTTCTAAATTGACATTGGC------ATTAAATT-GGA-CTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGAACATTTAT-AGATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTGTCATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-TTT-GAATT-----TGGGAAGCTAGGATTAGCAG-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACTATTTTTCA----------G-CATCCA---CA-ATTAACTTTGCTGTA-TT-AAGGTTCAAT-TATCATGTTCAATATCTTTTTT-CAACCTAATTTCAG-AGTCGCGTGAAGATC---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACATCTTTCAACTTC--ANNNNNN-NNNN----NN-------N-NNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNTTTTAA-A---ACAA-AATCAAACATCTTTCCACGTCA-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNGTTCAA-TTAACAAAATCAAACATC-----------TTTCA-ACGTCG-AAATGCGACGTTGTTTC-AGCGTTGAA---------------GT-GCCTGCTGG
gi|10 : atgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAATTGATATATTCAATTACTTTTTTCAACCTT--ATTCAGA-GTGA----CG-------G-TGTT-TT-CAACGTCAGATTTC--GACGTCGGTTCAA---------TTAACA---A---TAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGGg
gi|11 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT--ATTCAGA-GTGA----CG-------G-TGTT-TT-CAACGTCAGATTTC--GACGTCGGTTCAA---------TTAACA---A---TAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGG
gi|12 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT--ATTCAGA-GTGA----CG-------G-TGTT-TT-CAACGTCAGATTTC--GACGTCGGTTCAA---------TTAACA---A---TAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGG
gi|14 : aatgtaTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|15 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|16 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|17 : tTGA-A-T-TG--AACTAC------GTA-TCATTTTTGTTA-TGTTTTGCTATGCTAAATTATACAGTTTTATCATTCATTTT--ATTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTATTGTT--AAGGGGT--GAAGA-AATTC-TAAA---CA-TTT-GAATT-----AAGGAAATTAGGATTAGCAA-TT---------GT--ATTTA
gi|17 : TGTA-TTTAATGTTAAAT-TAATACCCTCAATA-CTTTTTT-CAACCTTATTTCAatgttaaattaataccctcaatacttttttcaaccttatttca
gi|18 : tgaattgaactacgtatcatttttgttatgttttgctatgctaaattatacagttttatcattcattttattgtcattatttaatctttttatgagatagactaattattgttaaggggtgaagaaattctaaacatttgaattaaggaaattaggattagcaatTTCAACGTCAATTTTC--AACGTCGGTTCAA---------ATAACA---A----AATCAAACATCTTTCAACGTCGNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNGTTCAATT--ACAAAATCAAACATCTTTCAACGTCA--NNN-NNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNNN--NNNNNNNNNNGT-GCCTGCTGG
gi|19 : tcgCAT---GAGAAAGAGTTAAT--GGACT-AATTT-TACCTTGCGTGTACATT-------------------AACTAC------GTA-TCACTTTTGTTG-TATTT-GCTATGCAAAATTATA--GTTTTATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAG-ATATTAA-ATAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-T
gi|2 : gattTTGTTTTTAAATTGAC------ATTAGATG-GAA-CCCAT---GAGAAAAAGCTAAT--AAACT-AATTT-TACCTCGCATGTACATTTAT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTACTATGCAAAAT---ACAGTTTCATCGTTCATTTT--GTTG-TCATT---TAGTC-TTTT-ATGAAAA-AGACTAG-TTATTGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGACGTTAGGATTAGCAA-TT---------GT--ATTTTGAATCGATAATTACA--ACCT---TATGTCGCCCATTTTTCA----------T-CATCGA---CA-ATTAACTTTGCTGTGTTT-AAGGTTCAAT-TAACATGTTCAATACCCTTTTT-CAACTCTATTTCAA-AGTCATATTAACATC---ATCAT---TATTAACGTTGAATCAACGTCAAATTTC--AA-TGTCGGTTCAATTAACAAATTCAA--ACATATTTTAACGTC--ACTTCAACGTTAAAATCG-------GACGTTATTTTAACGTCAAATTTCAAAACGTCGATTCAA---------TTAGCA---A----AATC-AACATCTTTCAA---CATAC--AATGTTGG---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNTTAACAAAATCAAACATCTTTCCACCTTATTTCA-ACGTCG-AAATGCGACGTTCTTTC-AATGCTGAATCA--
gi|21 : GTTGCA-TTTAATATTCAAT-TGATATACTCAATACATTTTTT-CAACCTTATTTCAG-AGT---------------------------GACGTTGAATCAACGTCAGATTTC--GA-CGTCGGTTCTATTAACAAAATCAA--
gi|22 : tttgaatgaaggaagttaagattagca-TT-AATGTTCAAT-TAATATACTCAACACTTTTTTTTCAACCTCATTTCAG-AGT---------------------------GACGTTGAATCAACGTCAGACTTC--GA-CATCGATTCAATTAACAAAATCAA--ACATCT
gi|26 : atCAACCTTTTTTCAACGGTGTTTCA-ACGTAA-AAGTGCAACGTTGTTTC-AACGTTTGATC---AATGTTGA--GT-GCCCGCTGG
gi|27 : cTTTAAATTGACGTTGGCATTAAATT-GGA-TTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TA
gi|28 : ttgtGTAG-AAAAGTGACGTTCATTC-AACGTTGAA-CT--AACG-TTGGTTT-GCCAGCT
gi|3 : TATTTGTATCTTTAA-TTGAC------ATTAAATTTGAA-CCCAT---GAGAA---GCTAATTTGAACTTAATTTATACCTTATG---ACATTTTT-AAATGA-A-TCTGTTAACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAG-TTCATCAT--ATTTTTAGTTG-TCATT-TTTAATC-TTTTTATGAAATAAGAC-AA-TT-ATGTT--AAGGGAT--GAAGACGATTCAAAAA---CATTTT-GA--T-----GAGG-AGTTAGGATTAGCAATTT---------GT--ATT
gi|3 : ctgtGTTCA--TAATATATTCAAT-ACTTTTTTTAACACC--TTGTCTA-G-------CA-------G-TG--------ACGT--AATC-----ACGTAGATTCGA---------GTGATACAAACAATC-TCAGCCGT-TTGCAA--TTAAACTCGATGT--ATTTA-CGTCGT---CGAGTTGTT-CATCGT--------TCTTG--CGTCGGTTCAATT-AACAAAATCAA-CATCTTTCAACGTCATTTCACACGTCGCAAATGCGACGTTGTTTCAAACGTTG-ATCAACAACG--TATTGTGGCCTGCTGGaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgcgtcggttcaattaacaaaatcaacatctttcaacgtcatttcacacgtcgcaaatgcgacgttgtttcaaacgttgatcaacaacgtattgtggcctgctgg
gi|4 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaatttgtattaat------ATTAA-TT-GAAGCCCAT---GAGAAAA-GCTAAT--GAAAT-AATTT-TACCTTTCATGCACATTTTT-AAATGACA-T-TG--A-CTAT------GTA-TCACTTTTGTTA-TATCTTGCTATGCAAAATTATACAGTTTCATCATTCA-TTT--ATTG-TCATTATTTAATT-TTT---TGAAAT-AGACTAATTTATTGTT--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATG-----AAGGAAGTTAGGATTAGCAA-TT---------GTTCAATTAATAT-----ACTTCAATACTT---TTTTTCAACCTTATTTCAGAGTGATGTTG-AATCAAGGTCAGATT---TTCGACGT------CGGTTCAAT-TTACAAAATCAA-ACATCTTT---AAC------------GTCGATTCAA---C---GTCGA---AATTG-CGTTGTTTCAACGTCAGATTTCCGAA-CGTCGGTTCAATTAACAAA--CAA--A-ATCTTTCAATGTC--ATTTCAA-
gi|6 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntC------ATTAAATT-AAA-CTCAT---AAGAAAAAGCTAAT--GAACT-AATTT-TATCTTGCATGTACATTGAT-AAATGA-A-T-TG--AACTAC------GTA-TAACTTTT-----TATTTTGC------------TACAATTTCATAATTCATTTT--CTTT-TCACTATTTAATC-TTTTTA--AG-T-TGACTAA-ATGATGTG--AAGGAGTAAAAAAA-AATT--AAAA---CA-TTTGGAATT-----AAGGAATTTTAGATTTGCTA-TT---------GTA-ATTTAGAATCGAGGATTGCA--A-CT---TATGTCGACCA-ATTCCA----------G-CACCCA---CA-ATTAACTT-GCTGTA-TT-AAGGTTCAAT-TAACATCTTCATTACC-TTTTT-CAA-CTAATTTCAGAAGTCGCATCAA---CATAATCAT---TATTAACGTTGAATCAACGTCAGATTTC--AATCGTCGGTTTAATTAACAAATTCAA--ACGTATTTCAACGTTGAAATCCGA--------------------CATTGTTTCAGAGTCAATTTTC--AGCATCGGTTCAA---------TTAACA---A
gi|7 : gAATC-TTTTTATGAGAT-AGACTAA-TTATTGTG--AAGGA-T--GAGGA-TTTTT-AAAA---CA-GTT-GACTA-----AACGAAGTAAGGATTAGTAA-TTGTATTAATTGT--ATTTAGAACCGAGGATTACA--ACCT---TATATCGATCATTTCTCA----------GCCATC-A---GA-ATCAACTTCGCTATA-TT-AAGGTTCAAT-TAACATATTCAATACC-TTTTT-CAACCTTCTTTCAG-AAACGCATCAA---CATTATCAT---TATTGATGCTAAATCAACGTCAGATTTT--AA-CGTCAGTTCAAAGAACAAATTTAA--GCATATTTCAACGAC--ATT-TGA-ATGT----CGAAATCCCA-CATTATTTCAAGGTCAAATTTC--AACGTCGATTCAA---------Tat
gi|8 : ATTCATTTT--GTTG-TCATTATTTAATC-CTTTTATGAGAT-AGACTAA-TTAATTTG--AAGAGGT---AAAA-GATTC--AAA---CA-TTT-GAATTTTTAAAAGGAAGTTAGGATTAGCAA-TT---------
gi|8 : aTA-GT-AAGGTTCAAT-TAACATGTTCAATACCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|8 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGTCG-AAATGCGACGTTGTTTC-AACGTTGAACC---AACA-TTGATGT-GCCTGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|9 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAT-GAATCA-G-T-TG--AGCTAC------GTA-TCACGTTTGTTA-TATTTTGCTATGCAAAATCATACATTTTCATAATTCATTTT--GTTG-TCATTACTTAATCTTTTTTATGGGAT-ATACTAA-TTAATGTG--AAGAGGT--AAAGA-GATTC-AAAAAATAA-TTT-GAATT-----AAGGAAGTTGTGAATAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCTTAATATGTCGACCATTTTTCA----------G-CATGTA---CA-ATTAACTTCACTGCA-TC-AAGGTTCGATGTAACATATTCAATACATTTTTT-CAACCTAATTTCAG-AGTTGCATCAA---C---ATCATCAATATTGATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TGTTGGTGAAAATGAAGTTTTGGGGAAACAAGGAAAAGCTACTAACGGTAAACAAATTATATACACTGTAATAAAATATATAAAAGATGGATATATAACATTTTATTTAAATGAATTTGCTAATGAGATATTTGAAAAATATCCAGGAATATTAGAATCATGATCTACAATAAATTCTCATAATTAAACTTAATTTTATTTGTGATTATGATTTTTTATTGATTTTAGAATGACTGTGTACTTCCTAGCACTGAGTCCTATGGCACTGAGCAGCACATGTTGATGTGATGTAGATTTAATTCAACATTGTGAAATACCTGAAATTATATCCCTGAAAGAACTGGAGAGGAGGTGGCTGAAGGCTTTGTGTTTGAAAAAAAAATCTGTTGTGACCGTTGACAATCCTTGGAAAAATATGCTAATATACTTGTAATCAATCTTGACAGGAGAAATTATCTGTTAGGATAAAGAATGC
Unaligned ( gi|13 ): TATGCCATGATGGTGATAAATGAAGTTGTGGGGAAACAAGGGAAAAGCTGCTATTTATTAAACAAATTATATAATGAAAAGGTAGATTAAGAGATAACATTTAATTTTTAAAAAAAAAAGTAGCTAACGAGATATTATGAAAAAATATCCAGAAATATTAGAATCATGATCTACAATAAATTCTCAAATACACTTTTTAATTGTGATTATTATTTTTCATTGACTTTATAATGTGTTCTTCCTATTAGTCCTATGGCAACTGG
Unaligned ( gi|20 ): AGAACTGGAGGAGGAGGTGGCTGAAGGCCTTGTGTTTTAACAAAAAAAATCTGTTGTAACCGTTGATAATCCTTGGAAAAAATATTCTAATATAATCAATCTTGACTGGAGAAAATTATCTGTTAGGGTAAATGAATGTTGT
Unaligned ( gi|23 ): ACATTTTATTCAAAATAATATTCAAAATAAAATCGCTAATGAAATATTATGAAAAATACACAGGAATACCTAGAATCATGATCTACAATATATTCTTAAATTACAG
Unaligned ( gi|24 ): AAGGCTTTGTGTTTGAAAAAAAATCTGTTGTTACCGTTGACAATATTTGGAAAAAAAAATATTTCTAATTTATCCCACCTCAGAC
Unaligned ( gi|25 ): AAAAGCTGCTAAAGTTAAACAAATTACAATGTATATATACTGTAATAAAATTATAAAAGATATAACATTTCATTTAAAATGAA
Unaligned ( gi|29 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Alignments
lowQualScore : 111111 222 1 1 333333 1 1 1 11 1111111 111111111 11 111 333333333333 111 3333333333333333 11 1111 22222222222222 22222222222 1 6666666666666666666666666666666666666666666666666666 1 111 1
lowQualScore : 222222 4 4 111 5 55 4 4 0 3 2 2 3 0 3 55 111111 0 6 0 0 8 6 44 0 3 3 3 7 22 44 3 3 77 555 77 3 6666666 4 4 777777777 11 99 111 000000000000 7 111 6 3 4 8 4 0 3 4 2 5 6666 1 1111111111111111 77 5 0 0 88 1 1 2 66 4 66666 4 0000 55555555555555 8 66 0 33333333333 2 6666666666666666666666666666666666666666666666666666 2 5 0 1 55 5 4 1 4 3 222 1 4 4
lowQualScore : ...... . . ... . .. . . . . . . . . . .. ...... . . . . . . .. . . . . . .. .. . . .. ... .. . ....... . . ......... .. .. ... ............ . ... . . . . . . . . . . .... . ................ .. . . . .. . . . .. . ..... . .... .............. . .. . ........... . .................................................... . . . . .. . . . . . ... . . .
lowQualScore : 888888 4 4 000 7 55 0 0 7 7 4 0 6 9 6 00 444444 9 5 9 3 7 5 66 0 1 1 1 2 77 22 5 1 44 444 22 3 2222222 5 4 888888888 99 22 777 000000000000 5 777 7 7 0 0 0 3 6 4 6 0 2222 4 5555555555555555 99 7 5 2 66 0 0 9 11 4 11111 4 6666 55555555555555 4 11 4 88888888888 0 3333333333333333333333333333333333333333333333333333 3 0 1 1 00 0 0 1 0 3 333 1 8 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCATCAA---C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--AT-TCCG--A-GTGA----CG-------G-CGTT-TTTCAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
Reference ( family-1259 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCATCAA---C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--AT-TCCG--A-GTGA----CG-------G-CGTT-TTTCAACGTCAAATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
gi|1 : TGTTTCTAAATTGACATTGGC------ATTAAATT-GGA-CTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGAACATTTAT-AGATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTGTCATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-TTT-GAATT-----TGGGAAGCTAGGATTAGCAG-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACTATTTTTCA----------G-CATCCA---CA-ATTAACTTTGCTGTA-TT-AAGGTTCAAT-TATCATGTTCAATATCTTTTTT-CAACCTAATTTCAG-AGTCGCGTGAAGATC---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACATCTTTCAACTTC--AN-NNNN--N-NNNN----NN-------N-NNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNTTTTAAAACAA-AATCAAACATCTTTCCACGTCA-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNGTTCAA-TTAACAAAATCAAACATC-----------TTTCA-ACGTCG-AAATGCGACGTTGTTTC-AGCGTTGAA---------------GT-GCCTGCTGG
gi|10 : atgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAATTGATATATTCAATTACTTTTTTCAACCTT--AT-TCAG--A-GTGA----CG-------G-TGTT-TT-CAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGGg
gi|11 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT--AT-TCAG--A-GTGA----CG-------G-TGTT-TT-CAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGG
gi|12 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT--AT-TCAG--A-GTGA----CG-------G-TGTT-TT-CAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGG
gi|14 : aatgtaTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|15 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|16 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|17 : tTGA-A-T-TG--AACTAC------GTA-TCATTTTTGTTA-TGTTTTGCTATGCTAAATTATACAGTTTTATCATTCATTTT--ATTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTATTGTT--AAGGGGT--GAAGA-AATTC-TAAA---CA-TTT-GAATT-----AAGGAAATTAGGATTAGCAA-TT---------GT--ATTTA
gi|17 : TGTA-TTTAATGTTAAAT-TAATACCCTCAATA-CTTTTTT-CAACCTTATTTCAatgttaaattaataccctcaatacttttttcaaccttatttca
gi|18 : tgaattgaactacgtatcatttttgttatgttttgctatgctaaattatacagttttatcattcattttattgtcattatttaatctttttatgagatagactaattattgttaaggggtgaagaaattctaaacatttgaattaaggaaattaggattagcaatTTCAACGTCAATTTTC--AACGTCGGTTCAAAT-----------AACAA-AATCAAACATCTTTCAACGTCGNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNGTTCAATT--ACAAAATCAAACATCTTTCAACGTCA--NNN-NNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNNN--NNNNNNNNNNGT-GCCTGCTGG
gi|19 : tcgCAT---GAGAAAGAGTTAAT--GGACT-AATTT-TACCTTGCGTGTACATT-------------------AACTAC------GTA-TCACTTTTGTTG-TATTT-GCTATGCAAAATTATA--GTTTTATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAG-ATATTAA-ATAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-T
gi|2 : gattTTGTTTTTAAATTGAC------ATTAGATG-GAA-CCCAT---GAGAAAAAGCTAAT--AAACT-AATTT-TACCTCGCATGTACATTTAT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTACTATGCAAAAT---ACAGTTTCATCGTTCATTTT--GTTG-TCATT---TAGTC-TTTT-ATGAAAA-AGACTAG-TTATTGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGACGTTAGGATTAGCAA-TT---------GT--ATTTTGAATCGATAATTACA--ACCT---TATGTCGCCCATTTTTCA----------T-CATCGA---CA-ATTAACTTTGCTGTGTTT-AAGGTTCAAT-TAACATGTTCAATACCCTTTTT-CAACTCTATTTCAA-AGTCATATTAACATC---ATCAT---TATTAACGTTGAATCAACGTCAAATTTC--AA-TGTCGGTTCAATTAACAAATTCAA--ACATATTTTAACGTC--AC-TTCA--ACGTTAAAATCG-------GACGTTATTTTAACGTCAAATTTCAAAACGTCGATTCAATT-----------AGCAA-AATC-AACATCTTTCAA---CATAC--AATGTTGG---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNTTAACAAAATCAAACATCTTTCCACCTTATTTCA-ACGTCG-AAATGCGACGTTCTTTC-AATGCTGAATCA--
gi|21 : GTTGCA-TTTAATATTCAAT-TGATATACTCAATACATTTTTT-CAACCTTATTTCAG-AGT---------------------------GACGTTGAATCAACGTCAGATTTC--GA-CGTCGGTTCTATTAACAAAATCAA--
gi|22 : tttgaatgaaggaagttaagattagca-TT-AATGTTCAAT-TAATATACTCAACACTTTTTTTTCAACCTCATTTCAG-AGT---------------------------GACGTTGAATCAACGTCAGACTTC--GA-CATCGATTCAATTAACAAAATCAA--ACATCT
gi|26 : atCAACCTTTTTTCAACGGTGTTTCA-ACGTAA-AAGTGCAACGTTGTTTC-AACGTTTGATC---AATGTTGA--GT-GCCCGCTGG
gi|27 : cTTTAAATTGACGTTGGCATTAAATT-GGA-TTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TA
gi|28 : ttgtGTAG-AAAAGTGACGTTCATTC-AACGTTGAA-CT--AACG-TTGGTTT-GCCAGCT
gi|3 : TATTTGTATCTTTAA-TTGAC------ATTAAATTTGAA-CCCAT---GAGAA---GCTAATTTGAACTTAATTTATACCTTATG---ACATTTTT-AAATGA-A-TCTGTTAACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAG-TTCATCAT--ATTTTTAGTTG-TCATT-TTTAATC-TTTTTATGAAATAAGAC-AA-TT-ATGTT--AAGGGAT--GAAGACGATTCAAAAA---CATTTT-GA--T-----GAGG-AGTTAGGATTAGCAATTT---------GT--ATT
gi|3 : ctgtGTTCA--TAATATATTCAAT-ACTTTTTTTAACACC--TTGTCTAGCA-GTGA----CG------------T-AATCA-CGT-AGATT-C--GA-GT-GATACAA--------------ACAATC-TCAGCCGT-TTGCAA--TTAAACTCGATGT--ATTTA-CGTCGT---CGAGTTGTT-CATCGT--------TCTTG--CGTCGGTTCAATT-AACAAAATCAA-CATCTTTCAACGTCATTTCACACGTCGCAAATGCGACGTTGTTTCAAACGTTG-ATCAACAACG--TATTGTGGCCTGCTGGaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgcgtcggttcaattaacaaaatcaacatctttcaacgtcatttcacacgtcgcaaatgcgacgttgtttcaaacgttgatcaacaacgtattgtggcctgctgg
gi|4 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaatttgtattaat------ATTAA-TT-GAAGCCCAT---GAGAAAA-GCTAAT--GAAAT-AATTT-TACCTTTCATGCACATTTTT-AAATGACA-T-TG--A-CTAT------GTA-TCACTTTTGTTA-TATCTTGCTATGCAAAATTATACAGTTTCATCATTCA-TTT--ATTG-TCATTATTTAATT-TTT---TGAAAT-AGACTAATTTATTGTT--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATG-----AAGGAAGTTAGGATTAGCAA-TT---------GTTCAATTAATAT-----ACTTCAATACTT---TTTTTCAACCTTATTTCAGAGTGATGTTG-AATCAAGGTCAGATT---TTCGACGT------CGGTTCAAT-TTACAAAATCAA-ACATCTTT---AAC------------GTCGATTCAA---C---GTCGA---AATTG-CGTTGTTTCAACGTCAGATTTCCGAA-CGTCGGTTCAATTAACAAA--CAA--A-ATCTTTCAATGTC--AT-TTCA--A-
gi|6 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntC------ATTAAATT-AAA-CTCAT---AAGAAAAAGCTAAT--GAACT-AATTT-TATCTTGCATGTACATTGAT-AAATGA-A-T-TG--AACTAC------GTA-TAACTTTT-----TATTTTGC------------TACAATTTCATAATTCATTTT--CTTT-TCACTATTTAATC-TTTTTA--AG-T-TGACTAA-ATGATGTG--AAGGAGTAAAAAAA-AATT--AAAA---CA-TTTGGAATT-----AAGGAATTTTAGATTTGCTA-TT---------GTA-ATTTAGAATCGAGGATTGCA--A-CT---TATGTCGACCA-ATTCCA----------G-CACCCA---CA-ATTAACTT-GCTGTA-TT-AAGGTTCAAT-TAACATCTTCATTACC-TTTTT-CAA-CTAATTTCAGAAGTCGCATCAA---CATAATCAT---TATTAACGTTGAATCAACGTCAGATTTC--AATCGTCGGTTTAATTAACAAATTCAA--ACGTATTTCAACGTTGAAA-TCCG--A--------------------CATTGTTTCAGAGTCAATTTTC--AGCATCGGTTCAATT-----------AACAA
gi|7 : gAATC-TTTTTATGAGAT-AGACTAA-TTATTGTG--AAGGA-T--GAGGA-TTTTT-AAAA---CA-GTT-GACTA-----AACGAAGTAAGGATTAGTAA-TTGTATTAATTGT--ATTTAGAACCGAGGATTACA--ACCT---TATATCGATCATTTCTCA----------GCCATC-A---GA-ATCAACTTCGCTATA-TT-AAGGTTCAAT-TAACATATTCAATACC-TTTTT-CAACCTTCTTTCAG-AAACGCATCAA---CATTATCAT---TATTGATGCTAAATCAACGTCAGATTTT--AA-CGTCAGTTCAAAGAACAAATTTAA--GCATATTTCAACGAC--AT-T-TG--A-ATGT----CGAAATCCCA-CATTATTTCAAGGTCAAATTTC--AACGTCGATTCAATat
gi|8 : ATTCATTTT--GTTG-TCATTATTTAATC-CTTTTATGAGAT-AGACTAA-TTAATTTG--AAGAGGT---AAAA-GATTC--AAA---CA-TTT-GAATTTTTAAAAGGAAGTTAGGATTAGCAA-TT---------
gi|8 : aTA-GT-AAGGTTCAAT-TAACATGTTCAATACCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|8 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGTCG-AAATGCGACGTTGTTTC-AACGTTGAACC---AACA-TTGATGT-GCCTGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|9 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAT-GAATCA-G-T-TG--AGCTAC------GTA-TCACGTTTGTTA-TATTTTGCTATGCAAAATCATACATTTTCATAATTCATTTT--GTTG-TCATTACTTAATCTTTTTTATGGGAT-ATACTAA-TTAATGTG--AAGAGGT--AAAGA-GATTC-AAAAAATAA-TTT-GAATT-----AAGGAAGTTGTGAATAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCTTAATATGTCGACCATTTTTCA----------G-CATGTA---CA-ATTAACTTCACTGCA-TC-AAGGTTCGATGTAACATATTCAATACATTTTTT-CAACCTAATTTCAG-AGTTGCATCAA---C---ATCATCAATATTGATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TGTTGGTGAAAATGAAGTTTTGGGGAAACAAGGAAAAGCTACTAACGGTAAACAAATTATATACACTGTAATAAAATATATAAAAGATGGATATATAACATTTTATTTAAATGAATTTGCTAATGAGATATTTGAAAAATATCCAGGAATATTAGAATCATGATCTACAATAAATTCTCATAATTAAACTTAATTTTATTTGTGATTATGATTTTTTATTGATTTTAGAATGACTGTGTACTTCCTAGCACTGAGTCCTATGGCACTGAGCAGCACATGTTGATGTGATGTAGATTTAATTCAACATTGTGAAATACCTGAAATTATATCCCTGAAAGAACTGGAGAGGAGGTGGCTGAAGGCTTTGTGTTTGAAAAAAAAATCTGTTGTGACCGTTGACAATCCTTGGAAAAATATGCTAATATACTTGTAATCAATCTTGACAGGAGAAATTATCTGTTAGGATAAAGAATGC
Unaligned ( gi|13 ): TATGCCATGATGGTGATAAATGAAGTTGTGGGGAAACAAGGGAAAAGCTGCTATTTATTAAACAAATTATATAATGAAAAGGTAGATTAAGAGATAACATTTAATTTTTAAAAAAAAAAGTAGCTAACGAGATATTATGAAAAAATATCCAGAAATATTAGAATCATGATCTACAATAAATTCTCAAATACACTTTTTAATTGTGATTATTATTTTTCATTGACTTTATAATGTGTTCTTCCTATTAGTCCTATGGCAACTGG
Unaligned ( gi|20 ): AGAACTGGAGGAGGAGGTGGCTGAAGGCCTTGTGTTTTAACAAAAAAAATCTGTTGTAACCGTTGATAATCCTTGGAAAAAATATTCTAATATAATCAATCTTGACTGGAGAAAATTATCTGTTAGGGTAAATGAATGTTGT
Unaligned ( gi|23 ): ACATTTTATTCAAAATAATATTCAAAATAAAATCGCTAATGAAATATTATGAAAAATACACAGGAATACCTAGAATCATGATCTACAATATATTCTTAAATTACAG
Unaligned ( gi|24 ): AAGGCTTTGTGTTTGAAAAAAAATCTGTTGTTACCGTTGACAATATTTGGAAAAAAAAATATTTCTAATTTATCCCACCTCAGAC
Unaligned ( gi|25 ): AAAAGCTGCTAAAGTTAAACAAATTACAATGTATATATACTGTAATAAAATTATAAAAGATATAACATTTCATTTAAAATGAA
Unaligned ( gi|29 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Alignments
lowQualScore : 111111 222 1 1 333333 1 1 1 11 1111111 111111111 11 111 333333333333 111 3333333333333333 11 1111 22222222222222 22222222222 1 6666666666666666666666666666666666666666666666666666 1 111 1
lowQualScore : 222222 4 4 111 5 55 4 4 0 3 2 2 3 0 3 55 111111 0 6 0 0 8 6 44 0 3 3 3 7 22 44 3 3 77 555 77 3 6666666 4 4 777777777 11 99 111 000000000000 7 111 6 3 4 8 4 0 3 4 2 5 6666 1 1111111111111111 77 5 0 0 88 1 1 2 66 4 66666 4 0000 55555555555555 8 66 0 33333333333 2 6666666666666666666666666666666666666666666666666666 2 5 0 1 55 5 4 1 4 3 222 1 4 4
lowQualScore : ...... . . ... . .. . . . . . . . . . .. ...... . . . . . . .. . . . . . .. .. . . .. ... .. . ....... . . ......... .. .. ... ............ . ... . . . . . . . . . . .... . ................ .. . . . .. . . . .. . ..... . .... .............. . .. . ........... . .................................................... . . . . .. . . . . . ... . . .
lowQualScore : 888888 4 4 000 7 55 0 0 7 7 4 0 6 9 6 00 444444 9 5 9 3 7 5 66 0 1 1 1 2 77 22 5 1 44 444 22 3 2222222 5 4 888888888 99 22 777 000000000000 5 777 7 7 0 0 0 3 6 4 6 0 2222 4 5555555555555555 99 7 5 2 66 0 0 9 11 4 11111 4 6666 55555555555555 4 11 4 88888888888 0 3333333333333333333333333333333333333333333333333333 3 0 1 1 00 0 0 1 0 3 333 1 8 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCATCAA---C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--AT-TCCG--A-GTGA----CG-------G-CGTT-TTTCAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
Reference ( family-1259 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCATCAA---C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--AT-TCCG--A-GTGA----CG-------G-CGTT-TTTCAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
gi|1 : TGTTTCTAAATTGACATTGGC------ATTAAATT-GGA-CTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGAACATTTAT-AGATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTGTCATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-TTT-GAATT-----TGGGAAGCTAGGATTAGCAG-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACTATTTTTCA----------G-CATCCA---CA-ATTAACTTTGCTGTA-TT-AAGGTTCAAT-TATCATGTTCAATATCTTTTTT-CAACCTAATTTCAG-AGTCGCGTGAAGATC---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACATCTTTCAACTTC--AN-NNNN--N-NNNN----NN-------N-NNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNTTTTAAAACAA-AATCAAACATCTTTCCACGTCA-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNGTTCAA-TTAACAAAATCAAACATC-----------TTTCA-ACGTCG-AAATGCGACGTTGTTTC-AGCGTTGAA---------------GT-GCCTGCTGG
gi|10 : atgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAATTGATATATTCAATTACTTTTTTCAACCTT--AT-TCAG--A-GTGA----CG-------G-TGTT-TT-CAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGGg
gi|11 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT--AT-TCAG--A-GTGA----CG-------G-TGTT-TT-CAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGG
gi|12 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT--AT-TCAG--A-GTGA----CG-------G-TGTT-TT-CAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGG
gi|14 : aatgtaTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|15 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|16 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|17 : tTGA-A-T-TG--AACTAC------GTA-TCATTTTTGTTA-TGTTTTGCTATGCTAAATTATACAGTTTTATCATTCATTTT--ATTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTATTGTT--AAGGGGT--GAAGA-AATTC-TAAA---CA-TTT-GAATT-----AAGGAAATTAGGATTAGCAA-TT---------GT--ATTTA
gi|17 : TGTA-TTTAATGTTAAAT-TAATACCCTCAATA-CTTTTTT-CAACCTTATTTCAatgttaaattaataccctcaatacttttttcaaccttatttca
gi|18 : tgaattgaactacgtatcatttttgttatgttttgctatgctaaattatacagttttatcattcattttattgtcattatttaatctttttatgagatagactaattattgttaaggggtgaagaaattctaaacatttgaattaaggaaattaggattagcaatTTCAACGTCAATTTTC--AACGTCGGTTCAAAT-----------AACAA-AATCAAACATCTTTCAACGTCGNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNGTTCAATT--ACAAAATCAAACATCTTTCAACGTCA--NNN-NNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNNN--NNNNNNNNNNGT-GCCTGCTGG
gi|19 : tcgCAT---GAGAAAGAGTTAAT--GGACT-AATTT-TACCTTGCGTGTACATT-------------------AACTAC------GTA-TCACTTTTGTTG-TATTT-GCTATGCAAAATTATA--GTTTTATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAG-ATATTAA-ATAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-T
gi|2 : gattTTGTTTTTAAATTGAC------ATTAGATG-GAA-CCCAT---GAGAAAAAGCTAAT--AAACT-AATTT-TACCTCGCATGTACATTTAT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTACTATGCAAAAT---ACAGTTTCATCGTTCATTTT--GTTG-TCATT---TAGTC-TTTT-ATGAAAA-AGACTAG-TTATTGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGACGTTAGGATTAGCAA-TT---------GT--ATTTTGAATCGATAATTACA--ACCT---TATGTCGCCCATTTTTCA----------T-CATCGA---CA-ATTAACTTTGCTGTGTTT-AAGGTTCAAT-TAACATGTTCAATACCCTTTTT-CAACTCTATTTCAA-AGTCATATTAACATC---ATCAT---TATTAACGTTGAATCAACGTCAAATTTC--AA-TGTCGGTTCAATTAACAAATTCAA--ACATATTTTAACGTC--AC-TTCA--ACGTTAAAATCG-------GACGTTATTTTAACGTCAAATTTCAAAACGTCGATTCAATT-----------AGCAA-AATC-AACATCTTTCAA---CATAC--AATGTTGG---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNTTAACAAAATCAAACATCTTTCCACCTTATTTCA-ACGTCG-AAATGCGACGTTCTTTC-AATGCTGAATCA--
gi|21 : GTTGCA-TTTAATATTCAAT-TGATATACTCAATACATTTTTT-CAACCTTATTTCAG-AGT---------------------------GACGTTGAATCAACGTCAGATTTC--GA-CGTCGGTTCTATTAACAAAATCAA--
gi|22 : tttgaatgaaggaagttaagattagca-TT-AATGTTCAAT-TAATATACTCAACACTTTTTTTTCAACCTCATTTCAG-AGT---------------------------GACGTTGAATCAACGTCAGACTTC--GA-CATCGATTCAATTAACAAAATCAA--ACATCT
gi|26 : atCAACCTTTTTTCAACGGTGTTTCA-ACGTAA-AAGTGCAACGTTGTTTC-AACGTTTGATC---AATGTTGA--GT-GCCCGCTGG
gi|27 : cTTTAAATTGACGTTGGCATTAAATT-GGA-TTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TA
gi|28 : ttgtGTAG-AAAAGTGACGTTCATTC-AACGTTGAA-CT--AACG-TTGGTTT-GCCAGCT
gi|3 : TATTTGTATCTTTAA-TTGAC------ATTAAATTTGAA-CCCAT---GAGAA---GCTAATTTGAACTTAATTTATACCTTATG---ACATTTTT-AAATGA-A-TCTGTTAACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAG-TTCATCAT--ATTTTTAGTTG-TCATT-TTTAATC-TTTTTATGAAATAAGAC-AA-TT-ATGTT--AAGGGAT--GAAGACGATTCAAAAA---CATTTT-GA--T-----GAGG-AGTTAGGATTAGCAATTT---------GT--ATT
gi|3 : ctgtGTTCA--TAATATATTCAAT-ACTTTTTTTAACACC--TTGTCTAGCA-GTGA----CG------------T-AATCA-CGT-AGATT-C--GA-GT-GATACAA--------------ACAATC-TCAGCCGT-TTGCAA--TTAAACTCGATGT--ATTTA-CGTCGT---CGAGTTGTT-CATCGT--------TCTTG--CGTCGGTTCAATT-AACAAAATCAA-CATCTTTCAACGTCATTTCACACGTCGCAAATGCGACGTTGTTTCAAACGTTG-ATCAACAACG--TATTGTGGCCTGCTGGaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgcgtcggttcaattaacaaaatcaacatctttcaacgtcatttcacacgtcgcaaatgcgacgttgtttcaaacgttgatcaacaacgtattgtggcctgctgg
gi|4 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaatttgtattaat------ATTAA-TT-GAAGCCCAT---GAGAAAA-GCTAAT--GAAAT-AATTT-TACCTTTCATGCACATTTTT-AAATGACA-T-TG--A-CTAT------GTA-TCACTTTTGTTA-TATCTTGCTATGCAAAATTATACAGTTTCATCATTCA-TTT--ATTG-TCATTATTTAATT-TTT---TGAAAT-AGACTAATTTATTGTT--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATG-----AAGGAAGTTAGGATTAGCAA-TT---------GTTCAATTAATAT-----ACTTCAATACTT---TTTTTCAACCTTATTTCAGAGTGATGTTG-AATCAAGGTCAGATT---TTCGACGT------CGGTTCAAT-TTACAAAATCAA-ACATCTTT---AAC------------GTCGATTCAA---C---GTCGA---AATTG-CGTTGTTTCAACGTCAGATTTCCGAA-CGTCGGTTCAATTAACAAA--CAA--A-ATCTTTCAATGTC--AT-TTCA--A-
gi|6 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntC------ATTAAATT-AAA-CTCAT---AAGAAAAAGCTAAT--GAACT-AATTT-TATCTTGCATGTACATTGAT-AAATGA-A-T-TG--AACTAC------GTA-TAACTTTT-----TATTTTGC------------TACAATTTCATAATTCATTTT--CTTT-TCACTATTTAATC-TTTTTA--AG-T-TGACTAA-ATGATGTG--AAGGAGTAAAAAAA-AATT--AAAA---CA-TTTGGAATT-----AAGGAATTTTAGATTTGCTA-TT---------GTA-ATTTAGAATCGAGGATTGCA--A-CT---TATGTCGACCA-ATTCCA----------G-CACCCA---CA-ATTAACTT-GCTGTA-TT-AAGGTTCAAT-TAACATCTTCATTACC-TTTTT-CAA-CTAATTTCAGAAGTCGCATCAA---CATAATCAT---TATTAACGTTGAATCAACGTCAGATTTC--AATCGTCGGTTTAATTAACAAATTCAA--ACGTATTTCAACGTTGAAA-TCCG--A--------------------CATTGTTTCAGAGTCAATTTTC--AGCATCGGTTCAATT-----------AACAA
gi|7 : gAATC-TTTTTATGAGAT-AGACTAA-TTATTGTG--AAGGA-T--GAGGA-TTTTT-AAAA---CA-GTT-GACTA-----AACGAAGTAAGGATTAGTAA-TTGTATTAATTGT--ATTTAGAACCGAGGATTACA--ACCT---TATATCGATCATTTCTCA----------GCCATC-A---GA-ATCAACTTCGCTATA-TT-AAGGTTCAAT-TAACATATTCAATACC-TTTTT-CAACCTTCTTTCAG-AAACGCATCAA---CATTATCAT---TATTGATGCTAAATCAACGTCAGATTTT--AA-CGTCAGTTCAAAGAACAAATTTAA--GCATATTTCAACGAC--AT-T-TG--A-ATGT----CGAAATCCCA-CATTATTTCAAGGTCAAATTTC--AACGTCGATTCAATat
gi|8 : ATTCATTTT--GTTG-TCATTATTTAATC-CTTTTATGAGAT-AGACTAA-TTAATTTG--AAGAGGT---AAAA-GATTC--AAA---CA-TTT-GAATTTTTAAAAGGAAGTTAGGATTAGCAA-TT---------
gi|8 : aTA-GT-AAGGTTCAAT-TAACATGTTCAATACCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|8 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGTCG-AAATGCGACGTTGTTTC-AACGTTGAACC---AACA-TTGATGT-GCCTGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|9 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAT-GAATCA-G-T-TG--AGCTAC------GTA-TCACGTTTGTTA-TATTTTGCTATGCAAAATCATACATTTTCATAATTCATTTT--GTTG-TCATTACTTAATCTTTTTTATGGGAT-ATACTAA-TTAATGTG--AAGAGGT--AAAGA-GATTC-AAAAAATAA-TTT-GAATT-----AAGGAAGTTGTGAATAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCTTAATATGTCGACCATTTTTCA----------G-CATGTA---CA-ATTAACTTCACTGCA-TC-AAGGTTCGATGTAACATATTCAATACATTTTTT-CAACCTAATTTCAG-AGTTGCATCAA---C---ATCATCAATATTGATG
blockSeqs : GTTGGC T G TGA T TT T A T T C C T C TT ATCATG T T T A A TA T T A T A TT AA A C AA AAT TT G TTTTAAA T T GTATTAATT TC AT TAA GAGTGATGTTG G GGT G T T T G T T T A CATA T CATCATCATT CG T TT T T C GA G CTAGC C AAAT AAATCCCACATTA T AA . T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A T G AA C C N A T AAC T A G
blockSeqs : . . . TGA T . . . T T C . T . . ATCATG T T T A A . T . . . A TT . A . A . T . TA T . . A . . GC A . . C . T . C . T . CGAT C CATAATCATT . . TT T T C . . CAG . . GACGTTA T . . T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A T G AA . . C . T A T A .
blockSeqs : . . . TGA T . . . T T C . T . . ATCATG T T T A A . T . . . A TT . A . A . T . TA T . . . . . T C . . C . . . T . T . CGCA C CATTATCATT . . TT T T C . . CAG . . GTGTT T . . T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A T G AA . . G . T A T A .
blockSeqs : . . . . T . . . G A . . . . . . . T . A A . . . . . A . . A . A . T . TG T . . . . . G T . . C . . . T . C . CGCA C CATCATCAAT . . T A A G . . CAG . . GTGTT T . . T CGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N T A GT . . C . N A N N .
blockSeqs : . . . . T . . . A T . . . . . . . T . A A . . . . . G . . A . T . T . GA T . . . . . G . . . . . . . T . A . TGCA C CGTCGAA . . . A C A . . TCA . . GTGTT T . . . CATACAATGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N . A CT . . G . T N T G .
blockSeqs : . . . . T . . . G T . . . . . . . T . . A . . . . . A . . A . A . T . TA T . . . . . . T . T . . . . . . . T T G . . TCA . . CATTG . . . . TTAAACTCGATGTATTTACGTCGTCGAGTTGTTCATCGT . . A GG . . G . T A . T .
blockSeqs : . . . . . . . . A A . . . . . . . G . . . . . . . . A . . G . A . G . AA T . . . . . . . . A . . . . . A C G . . CCG . . T . . . A GT . . . . T T . A .
blockSeqs : . . . . . . . . A A . . . . . . . . . . . . . . . . A . . A . A . T . TA T . . . . . . . . . G A G . . TG . . . . . . C . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . A . A . T . . . . . . . A A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : A* *********** GN A**
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCATCAA---C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--AT-TCCG--A-GTGA----CG-------G-CGTT-TTTCAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTCA-AAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCATCAA---C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--AT-TCCG--A-GTGA----CG-------G-CGTT-TTTCAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TGTTGGTGAAAATGAAGTTTTGGGGAAACAAGGAAAAGCTACTAACGGTAAACAAATTATATACACTGTAATAAAATATATAAAAGATGGATATATAACATTTTATTTAAATGAATTTGCTAATGAGATATTTGAAAAATATCCAGGAATATTAGAATCATGATCTACAATAAATTCTCATAATTAAACTTAATTTTATTTGTGATTATGATTTTTTATTGATTTTAGAATGACTGTGTACTTCCTAGCACTGAGTCCTATGGCACTGAGCAGCACATGTTGATGTGATGTAGATTTAATTCAACATTGTGAAATACCTGAAATTATATCCCTGAAAGAACTGGAGAGGAGGTGGCTGAAGGCTTTGTGTTTGAAAAAAAAATCTGTTGTGACCGTTGACAATCCTTGGAAAAATATGCTAATATACTTGTAATCAATCTTGACAGGAGAAATTATCTGTTAGGATAAAGAATGC
Unaligned ( gi|13 ): TATGCCATGATGGTGATAAATGAAGTTGTGGGGAAACAAGGGAAAAGCTGCTATTTATTAAACAAATTATATAATGAAAAGGTAGATTAAGAGATAACATTTAATTTTTAAAAAAAAAAGTAGCTAACGAGATATTATGAAAAAATATCCAGAAATATTAGAATCATGATCTACAATAAATTCTCAAATACACTTTTTAATTGTGATTATTATTTTTCATTGACTTTATAATGTGTTCTTCCTATTAGTCCTATGGCAACTGG
Unaligned ( gi|20 ): AGAACTGGAGGAGGAGGTGGCTGAAGGCCTTGTGTTTTAACAAAAAAAATCTGTTGTAACCGTTGATAATCCTTGGAAAAAATATTCTAATATAATCAATCTTGACTGGAGAAAATTATCTGTTAGGGTAAATGAATGTTGT
Unaligned ( gi|23 ): ACATTTTATTCAAAATAATATTCAAAATAAAATCGCTAATGAAATATTATGAAAAATACACAGGAATACCTAGAATCATGATCTACAATATATTCTTAAATTACAG
Unaligned ( gi|24 ): AAGGCTTTGTGTTTGAAAAAAAATCTGTTGTTACCGTTGACAATATTTGGAAAAAAAAATATTTCTAATTTATCCCACCTCAGAC
Unaligned ( gi|25 ): AAAAGCTGCTAAAGTTAAACAAATTACAATGTATATATACTGTAATAAAATTATAAAAGATATAACATTTCATTTAAAATGAA
Unaligned ( gi|29 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Alignments
lowQualScore : 111111 222 1 1 333333 1 1 1 11 1111111 111111111 11 111 333333333333 111 3333333333333333 11 1111 22222222222222 22222222222 1 6666666666666666666666666666666666666666666666666666 1 111 1
lowQualScore : 222222 4 4 111 5 55 4 4 0 3 2 2 3 0 3 55 111111 0 6 0 0 8 6 44 0 3 3 3 7 22 44 3 3 77 555 77 3 6666666 4 4 777777777 11 99 111 000000000000 7 111 6 3 4 8 4 0 3 4 2 5 6666 1 1111111111111111 77 5 0 0 88 1 1 2 66 4 66666 4 0000 55555555555555 8 66 0 33333333333 2 6666666666666666666666666666666666666666666666666666 2 5 0 1 55 5 4 1 4 3 222 1 4 4
lowQualScore : ...... . . ... . .. . . . . . . . . . .. ...... . . . . . . .. . . . . . .. .. . . .. ... .. . ....... . . ......... .. .. ... ............ . ... . . . . . . . . . . .... . ................ .. . . . .. . . . .. . ..... . .... .............. . .. . ........... . .................................................... . . . . .. . . . . . ... . . .
lowQualScore : 888888 4 4 000 7 55 0 0 7 7 4 0 6 9 6 00 444444 9 5 9 3 7 5 66 0 1 1 1 2 77 22 5 1 44 444 22 3 2222222 5 4 888888888 99 22 777 000000000000 5 777 7 7 0 0 0 3 6 4 6 0 2222 4 5555555555555555 99 7 5 2 66 0 0 9 11 4 11111 4 6666 55555555555555 4 11 4 88888888888 0 3333333333333333333333333333333333333333333333333333 3 0 1 1 00 0 0 1 0 3 333 1 8 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCATCAA---C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--AT-TCCG--A-GTGA----CG-------G-CGTT-TTTCAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
Reference ( family-1259 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTATCTTTAAATTGAC------ATTAAATT-GAA-CCCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGTACATTTNT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTTTCATCATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGAAGTTAGGATTAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACCATTTTTCA----------G-CATCNA---CA-ATTAACTTCGCTGTA-TT-AAGGTTCAAT-TAACATATTCAATACCTTTTTT-CAACCTNATTTCAG-AGTCGCATCAA---C---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACNTNTTTCAACGTC--AT-TCCG--A-GTGA----CG-------G-CGTT-TTTCAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCTTTCAACGTCANAC--GATGTTGGTTTANCGTCGTNNNCGAGTTGTTNCATCGTNNN-CAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCGNCATTTCA-ACGTCG-AAATGCGACGTTGTTTC-AACGTTGAATCA--AACGTTTAATGT-GCCTGCTGG
gi|1 : TGTTTCTAAATTGACATTGGC------ATTAAATT-GGA-CTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TACCTTGCGTGAACATTTAT-AGATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAGTGTCATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-TTT-GAATT-----TGGGAAGCTAGGATTAGCAG-TT---------GT--ATTTAGAATCGAGGATTACA--ACCT---TATGTCGACTATTTTTCA----------G-CATCCA---CA-ATTAACTTTGCTGTA-TT-AAGGTTCAAT-TATCATGTTCAATATCTTTTTT-CAACCTAATTTCAG-AGTCGCGTGAAGATC---ATCAT---TATTGACGTTGAATCAACGTCAGATTTC--AA-CGTCGGTTCAATTAACAAATTCAA--ACATCTTTCAACTTC--AN-NNNN--N-NNNN----NN-------N-NNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNTTTTAAAACAA-AATCAAACATCTTTCCACGTCA-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNGTTCAA-TTAACAAAATCAAACATC-----------TTTCA-ACGTCG-AAATGCGACGTTGTTTC-AGCGTTGAA---------------GT-GCCTGCTGG
gi|10 : atgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAATTGATATATTCAATTACTTTTTTCAACCTT--AT-TCAG--A-GTGA----CG-------G-TGTT-TT-CAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGGg
gi|11 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT--AT-TCAG--A-GTGA----CG-------G-TGTT-TT-CAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGG
gi|12 : aatgtaTCAATTGATATATTCAATTACTTTTTTCAACCTT--AT-TCAG--A-GTGA----CG-------G-TGTT-TT-CAACGTCAGATTTC--GACGTCGGTTCAATT-----------AACAATAATCAAACATCNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTCGAACGTCGGTTCAATTTAACAAAATCAAACATCTTTCAGCAACATTTCA-ACGTCG-AAATGCGACGTT-TTTC-AACGTTGAATCA--AACGTTTAATAT-GCCTGCTGG
gi|14 : aatgtaTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|15 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|16 : tTTTTTATCTTTAAATTGAC------ATTAAATT-GAT-CCCATTGAGAGAAAAAGC-AAT--GAACT-AATTT-TACATGGCTTGTACATTTTTCAAATGA-ATT-TG--AACTACATCATGGTATTCAC-TTTGTTATTATTTTGCTATGCAAAAAT-TAC-GTTTCATCATTCATTTT--ATTGTTCATTATTTAATC-TTTTTATGGGAT-AGCATAA-TT-ATGTGTTAAGGGGT--GA--A-AATTC-AAAA---CA--TT-GAAT-------AAGAAG-TAGGATTAGC
gi|17 : tTGA-A-T-TG--AACTAC------GTA-TCATTTTTGTTA-TGTTTTGCTATGCTAAATTATACAGTTTTATCATTCATTTT--ATTG-TCATTATTTAATC-TTTTTATGAGAT-AGACTAA-TTATTGTT--AAGGGGT--GAAGA-AATTC-TAAA---CA-TTT-GAATT-----AAGGAAATTAGGATTAGCAA-TT---------GT--ATTTA
gi|17 : TGTA-TTTAATGTTAAAT-TAATACCCTCAATA-CTTTTTT-CAACCTTATTTCAatgttaaattaataccctcaatacttttttcaaccttatttca
gi|18 : tgaattgaactacgtatcatttttgttatgttttgctatgctaaattatacagttttatcattcattttattgtcattatttaatctttttatgagatagactaattattgttaaggggtgaagaaattctaaacatttgaattaaggaaattaggattagcaatTTCAACGTCAATTTTC--AACGTCGGTTCAAAT-----------AACAA-AATCAAACATCTTTCAACGTCGNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNGTTCAATT--ACAAAATCAAACATCTTTCAACGTCA--NNN-NNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNNN--NNNNNNNNNNGT-GCCTGCTGG
gi|19 : tcgCAT---GAGAAAGAGTTAAT--GGACT-AATTT-TACCTTGCGTGTACATT-------------------AACTAC------GTA-TCACTTTTGTTG-TATTT-GCTATGCAAAATTATA--GTTTTATAATTCATTTT--GTTG-TCATTATTTAATC-TTTTTATGAGAG-ATATTAA-ATAATGTG--AAGGGGT--AAAGA-GATTC--AAA---CA-T
gi|2 : gattTTGTTTTTAAATTGAC------ATTAGATG-GAA-CCCAT---GAGAAAAAGCTAAT--AAACT-AATTT-TACCTCGCATGTACATTTAT-AAATGA-A-T-TG--AACTAC------GTA-TCACTTTTGTTA-TATTTTACTATGCAAAAT---ACAGTTTCATCGTTCATTTT--GTTG-TCATT---TAGTC-TTTT-ATGAAAA-AGACTAG-TTATTGTG--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATT-----AAGGACGTTAGGATTAGCAA-TT---------GT--ATTTTGAATCGATAATTACA--ACCT---TATGTCGCCCATTTTTCA----------T-CATCGA---CA-ATTAACTTTGCTGTGTTT-AAGGTTCAAT-TAACATGTTCAATACCCTTTTT-CAACTCTATTTCAA-AGTCATATTAACATC---ATCAT---TATTAACGTTGAATCAACGTCAAATTTC--AA-TGTCGGTTCAATTAACAAATTCAA--ACATATTTTAACGTC--AC-TTCA--ACGTTAAAATCG-------GACGTTATTTTAACGTCAAATTTCAAAACGTCGATTCAATT-----------AGCAA-AATC-AACATCTTTCAA---CATAC--AATGTTGG---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNTTAACAAAATCAAACATCTTTCCACCTTATTTCA-ACGTCG-AAATGCGACGTTCTTTC-AATGCTGAATCA--
gi|21 : GTTGCA-TTTAATATTCAAT-TGATATACTCAATACATTTTTT-CAACCTTATTTCAG-AGT---------------------------GACGTTGAATCAACGTCAGATTTC--GA-CGTCGGTTCTATTAACAAAATCAA--
gi|22 : tttgaatgaaggaagttaagattagca-TT-AATGTTCAAT-TAATATACTCAACACTTTTTTTTCAACCTCATTTCAG-AGT---------------------------GACGTTGAATCAACGTCAGACTTC--GA-CATCGATTCAATTAACAAAATCAA--ACATCT
gi|26 : atCAACCTTTTTTCAACGGTGTTTCA-ACGTAA-AAGTGCAACGTTGTTTC-AACGTTTGATC---AATGTTGA--GT-GCCCGCTGG
gi|27 : cTTTAAATTGACGTTGGCATTAAATT-GGA-TTCAT---GAGAAAAAGCTAAT--GAACT-AATTT-TA
gi|28 : ttgtGTAG-AAAAGTGACGTTCATTC-AACGTTGAA-CT--AACG-TTGGTTT-GCCAGCT
gi|3 : TATTTGTATCTTTAA-TTGAC------ATTAAATTTGAA-CCCAT---GAGAA---GCTAATTTGAACTTAATTTATACCTTATG---ACATTTTT-AAATGA-A-TCTGTTAACTAC------GTA-TCACTTTTGTTA-TATTTTGCTATGCAAAATTATACAG-TTCATCAT--ATTTTTAGTTG-TCATT-TTTAATC-TTTTTATGAAATAAGAC-AA-TT-ATGTT--AAGGGAT--GAAGACGATTCAAAAA---CATTTT-GA--T-----GAGG-AGTTAGGATTAGCAATTT---------GT--ATT
gi|3 : ctgtGTTCA--TAATATATTCAAT-ACTTTTTTTAACACC--TTGTCTAGCA-GTGA----CG------------T-AATCA-CGT-AGATT-C--GA-GT-GATACAA--------------ACAATC-TCAGCCGT-TTGCAA--TTAAACTCGATGT--ATTTA-CGTCGT---CGAGTTGTT-CATCGT--------TCTTG--CGTCGGTTCAATT-AACAAAATCAA-CATCTTTCAACGTCATTTCACACGTCGCAAATGCGACGTTGTTTCAAACGTTG-ATCAACAACG--TATTGTGGCCTGCTGGaatgttcataatatattcaatactttttttaacaccttgtctagcagtgacgtaatcacgtagattcgagtgatacaaacaatctcagccgtttgcaattaaactcgatgtatttacgtcgtcgagttgttcatcgttcttgcgtcggttcaattaacaaaatcaacatctttcaacgtcatttcacacgtcgcaaatgcgacgttgtttcaaacgttgatcaacaacgtattgtggcctgctgg
gi|4 : ctgttatttgtatctttaattgacattaaatttgaacccatgagaagctaatttgaacttaatttataccttatgacatttttaaatgaatctgttaactacgtatcacttttgttatattttgctatgcaaaattatacagttcatcatatttttagttgtcatttttaatctttttatgaaataagacaattatgttaagggatgaagacgattcaaaaacattttgatgaggagttaggattagcaatttgtattaat------ATTAA-TT-GAAGCCCAT---GAGAAAA-GCTAAT--GAAAT-AATTT-TACCTTTCATGCACATTTTT-AAATGACA-T-TG--A-CTAT------GTA-TCACTTTTGTTA-TATCTTGCTATGCAAAATTATACAGTTTCATCATTCA-TTT--ATTG-TCATTATTTAATT-TTT---TGAAAT-AGACTAATTTATTGTT--AAGGGGT--GAAGA-GATTC-AAAA---CA-TTT-GAATG-----AAGGAAGTTAGGATTAGCAA-TT---------GTTCAATTAATAT-----ACTTCAATACTT---TTTTTCAACCTTATTTCAGAGTGATGTTG-AATCAAGGTCAGATT---TTCGACGT------CGGTTCAAT-TTACAAAATCAA-ACATCTTT---AAC------------GTCGATTCAA---C---GTCGA---AATTG-CGTTGTTTCAACGTCAGATTTCCGAA-CGTCGGTTCAATTAACAAA--CAA--A-ATCTTTCAATGTC--AT-TTCA--A-
gi|6 : tggatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntC------ATTAAATT-AAA-CTCAT---AAGAAAAAGCTAAT--GAACT-AATTT-TATCTTGCATGTACATTGAT-AAATGA-A-T-TG--AACTAC------GTA-TAACTTTT-----TATTTTGC------------TACAATTTCATAATTCATTTT--CTTT-TCACTATTTAATC-TTTTTA--AG-T-TGACTAA-ATGATGTG--AAGGAGTAAAAAAA-AATT--AAAA---CA-TTTGGAATT-----AAGGAATTTTAGATTTGCTA-TT---------GTA-ATTTAGAATCGAGGATTGCA--A-CT---TATGTCGACCA-ATTCCA----------G-CACCCA---CA-ATTAACTT-GCTGTA-TT-AAGGTTCAAT-TAACATCTTCATTACC-TTTTT-CAA-CTAATTTCAGAAGTCGCATCAA---CATAATCAT---TATTAACGTTGAATCAACGTCAGATTTC--AATCGTCGGTTTAATTAACAAATTCAA--ACGTATTTCAACGTTGAAA-TCCG--A--------------------CATTGTTTCAGAGTCAATTTTC--AGCATCGGTTCAATT-----------AACAA
gi|7 : gAATC-TTTTTATGAGAT-AGACTAA-TTATTGTG--AAGGA-T--GAGGA-TTTTT-AAAA---CA-GTT-GACTA-----AACGAAGTAAGGATTAGTAA-TTGTATTAATTGT--ATTTAGAACCGAGGATTACA--ACCT---TATATCGATCATTTCTCA----------GCCATC-A---GA-ATCAACTTCGCTATA-TT-AAGGTTCAAT-TAACATATTCAATACC-TTTTT-CAACCTTCTTTCAG-AAACGCATCAA---CATTATCAT---TATTGATGCTAAATCAACGTCAGATTTT--AA-CGTCAGTTCAAAGAACAAATTTAA--GCATATTTCAACGAC--AT-T-TG--A-ATGT----CGAAATCCCA-CATTATTTCAAGGTCAAATTTC--AACGTCGATTCAATat
gi|8 : ATTCATTTT--GTTG-TCATTATTTAATC-CTTTTATGAGAT-AGACTAA-TTAATTTG--AAGAGGT---AAAA-GATTC--AAA---CA-TTT-GAATTTTTAAAAGGAAGTTAGGATTAGCAA-TT---------
gi|8 : aTA-GT-AAGGTTCAAT-TAACATGTTCAATACCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|8 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGTCG-AAATGCGACGTTGTTTC-AACGTTGAACC---AACA-TTGATGT-GCCTGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcgaaatgcgacgttgtttcaacgttgaaccaacattgatgtgcctgctg
gi|9 : aattcattttgttgtcattatttaatccttttatgagatagactaattaatttgaagaggtaaaagattcaaacatttgaatttttaaaaggaagttaggattagcaattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaaggttcaattaacatgttcaataccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAT-GAATCA-G-T-TG--AGCTAC------GTA-TCACGTTTGTTA-TATTTTGCTATGCAAAATCATACATTTTCATAATTCATTTT--GTTG-TCATTACTTAATCTTTTTTATGGGAT-ATACTAA-TTAATGTG--AAGAGGT--AAAGA-GATTC-AAAAAATAA-TTT-GAATT-----AAGGAAGTTGTGAATAGCAA-TT---------GT--ATTTAGAATCGAGGATTACA--ACCTTAATATGTCGACCATTTTTCA----------G-CATGTA---CA-ATTAACTTCACTGCA-TC-AAGGTTCGATGTAACATATTCAATACATTTTTT-CAACCTAATTTCAG-AGTTGCATCAA---C---ATCATCAATATTGATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TGTTGGTGAAAATGAAGTTTTGGGGAAACAAGGAAAAGCTACTAACGGTAAACAAATTATATACACTGTAATAAAATATATAAAAGATGGATATATAACATTTTATTTAAATGAATTTGCTAATGAGATATTTGAAAAATATCCAGGAATATTAGAATCATGATCTACAATAAATTCTCATAATTAAACTTAATTTTATTTGTGATTATGATTTTTTATTGATTTTAGAATGACTGTGTACTTCCTAGCACTGAGTCCTATGGCACTGAGCAGCACATGTTGATGTGATGTAGATTTAATTCAACATTGTGAAATACCTGAAATTATATCCCTGAAAGAACTGGAGAGGAGGTGGCTGAAGGCTTTGTGTTTGAAAAAAAAATCTGTTGTGACCGTTGACAATCCTTGGAAAAATATGCTAATATACTTGTAATCAATCTTGACAGGAGAAATTATCTGTTAGGATAAAGAATGC
Unaligned ( gi|13 ): TATGCCATGATGGTGATAAATGAAGTTGTGGGGAAACAAGGGAAAAGCTGCTATTTATTAAACAAATTATATAATGAAAAGGTAGATTAAGAGATAACATTTAATTTTTAAAAAAAAAAGTAGCTAACGAGATATTATGAAAAAATATCCAGAAATATTAGAATCATGATCTACAATAAATTCTCAAATACACTTTTTAATTGTGATTATTATTTTTCATTGACTTTATAATGTGTTCTTCCTATTAGTCCTATGGCAACTGG
Unaligned ( gi|20 ): AGAACTGGAGGAGGAGGTGGCTGAAGGCCTTGTGTTTTAACAAAAAAAATCTGTTGTAACCGTTGATAATCCTTGGAAAAAATATTCTAATATAATCAATCTTGACTGGAGAAAATTATCTGTTAGGGTAAATGAATGTTGT
Unaligned ( gi|23 ): ACATTTTATTCAAAATAATATTCAAAATAAAATCGCTAATGAAATATTATGAAAAATACACAGGAATACCTAGAATCATGATCTACAATATATTCTTAAATTACAG
Unaligned ( gi|24 ): AAGGCTTTGTGTTTGAAAAAAAATCTGTTGTTACCGTTGACAATATTTGGAAAAAAAAATATTTCTAATTTATCCCACCTCAGAC
Unaligned ( gi|25 ): AAAAGCTGCTAAAGTTAAACAAATTACAATGTATATATACTGTAATAAAATTATAAAAGATATAACATTTCATTTAAAATGAA
Unaligned ( gi|29 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT