lowQualScore : 11111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 99999999999999999999999999999 2 1 1 1 333 11 00000000000000000000000000000000000000000000000000000000000000000 11 22 22 3333333333 11 333333333 33333333333 11111 11111 2222 111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2222 111 333333333 111111
lowQualScore : 6 99999999999999999999999999999 0 3 6 3 777 3 6 555 44 66666666666666666666666666666666666666666666666666666666666666666 33 7 0 22 3 22 8 1111111111 00 888888888 5 1 5 5 5 11 5 6 5 55555555555 4 4 99999 9 5 44444 5 3333 444 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 6666 5 3 000 000000000 3 000000 5 8888 4 6
lowQualScore : . ............................. . . . . ... . . ... .. ................................................................. .. . . .. . .. . .......... .. ......... . . . . . .. . . . ........... . . ..... . . ..... . .... ... ............................................................................................................................... . .... . . ... ......... . ...... . .... . .
lowQualScore : 0 77777777777777777777777777777 0 3 0 3 333 3 0 000 00 99999999999999999999999999999999999999999999999999999999999999999 88 8 2 88 5 33 0 1111111111 44 111111111 0 1 0 6 0 11 0 0 0 66666666666 4 8 22222 1 7 33333 7 0000 777 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 2222 0 6 888 999999999 6 555555 4 5555 4 0
consensus : CACCCGAAACATTCCGAGTATGAGCGTTCANTATTAACC----------GACGTAAACAAAGCCAAAAT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTAT-CATTGC-ACT--AAAAACAAATA---G--TTATTTACTTAAACAAA-CGTGTT-TTACTG----TA--CATANATTATGAT-GTCCCCATTCACAAAATCNGTTTGCTTCATGCATCAATGAC-GGGTT-----T-AATATTGAA-CAGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCTTACA--T--GCCAA-CATTGAT---G-AATTCTCGTCTATTTNGGAG-TA-----T-TTTGAGTG---AAAGGGAATA-TAATTTAA-------CAACTGANTNCTTTAGCTAN--ATGA-TTAA----------C-----GGT---TATTGAA--------CT-C--A-------------------------C-------AA-------GCTCGC---TGCA-TTTTNACAGCCAACTCGT----G-C-CA-ATATTCACCAA------TATAAGTTCAATA----ACCC-TATACTATA
Reference ( gi|1 ) : CGCCCGAAACATTCCGAGTA--------CAATATT--------------GACGTAAACAA-GCCAAAAT-GACAG-ACGATGATCCTCCGAA-TCTAACAGAT-TCGGTATTTGAGTATTTTTTGC-ACT--AAGAACAAATATTTATTTTATTTACTTAAACAAT-TTTGTT-TTGCTACAACTA--CATAAATTATGAT-TTCCCCATTCACAAAATCAGTTTGCTATATGCATCAATGAC-GGACT-----T-AATATTGAA-CAGT---------T-AGG-AAATGCATGCTGA-TATTGC-ATAC-TTTCACATTACAATT--GCCAA-TATTGAT---T-AATTCTCGTCTATTTTGGAG-TA-----T-TTTGAGTT---AAAAGGAATG-CAATTGAA-------AAATTGACTACTTTGGCTAA--ATGA-TTAA----------T-----GGT---TATTGAA--------CT-T--A-------------------------C-------AA-------GCTCG----TGCA-TTTTTACAGCCAATTCGT----G-T-AA-ATATTCACCAA------TACAAGTTCAATA----ACCC-TATACCATA
gi|2 : CACCTAAAATATTCCGAGTATAAGCGTTCAATATTAACCTAACCGTAACGACGTAAACAA-GCCAAAAT-GGCAG-ACGACAGTCCTCCGAA-TCTGACAGAG-CAGGTGTTTGA-TAT------C-A-T--AA----------------TATTTACTTAAACAAAATGTGTTATTG-------TA--CATATTTTATTAT-GTCCCTATTCACAAAATTAGTTTGCTTCATGCATCAATGAC-GGGTT-----T-GATATTGAA-CAAT---------T-AAA-AGATGCATGCTGA-TTTTGC-ACAC-TTTCAC--CAAAGAT--GCCAA-TATTGATGAATAAATTGTCGTCTATTTTGGAG-TA-----T-TTTGAGTA---AAAAGGAAT
gi|8 : aatatcataatcattatatagctaacaattagtagaaaatctgcataaaatctagagaatgtttttgtacattaactttgcagtggtgtaaattgtgtgCACTCGAAACATTCCGAGTATGAGCGTTCACTATTAACC----------GACATAAACA
gi|4 : atcgtacctttattatatagttaacaaatagtccgttataaaatctgcgtaaaatttagagagtgttagcattcaatatctaagaattcattgaaagctaactttccattgcgtaaattgtgtg--------------GACGTAAACAAAGCCAAAATAGGCAGGACGACGGGCCTCCAAAATCTGACAGAAACCGGTATTTGAG-ATTCATTGCCACTTTAAAAACAAATATC-GTTTTAC-----------------GTT-TTACTG----TA--CATGGATTGTGATGCTCCCCATTCACAAAATTCGTTTGCTTCTTGCATCAATGACGGGATTACATGT-AATATTGAA-CAAT---------TAAGA-AAATGCATGCTGATTATT-C-ACAC-TTCCACCTTA-GATTGGGCCAATTATTGAT---G-AATTCTTGACTA
gi|10 : aacgAT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTATATATTGT-ACT--AAAAACAAATA---A--TAATTTACTTAAACAA--AATGTA-TCACTG----TA--CATAAATTATGAT-GTTCCCATTCACAAAATCAGTTTGat
gi|3 : ATTTACTTAAAGAAA-CT-GTT-T-------ACTGTTCATATATTATAAT-GTCCGCATTCACAAAATCTGTTTGTTCCATGGATCAATGAC-GGGTT-----T-AATATTGGACCATT---------T-ATG-AAATACATGGTGA-TATTGC-ACAC-TTTCACATTAGA--T--GCCAA-TATTGAT---G-AATTCTCGTCCATGTTAAAA-CA-----T-TTCGTGTG---AAAAGGAACA-TAATTTAA-------CAACTAGATGTTTTAGCTAT--AT-A-CTAAAC--------G-----GGT---AATTGAA--------TT-T--A-------------------------TTGTGGTAAA-------TCTTG----T-CA-TTTTGACAGGCAGCTCGT----T-C-TA-ATATTCATCAA------TATCAGTTCAATA----ACCC-T
gi|17 : acctgaaagaattgccggctcatttgatagtgATGAC-GGGTT-----G-AATATTGAA-TAGT---------T-AAG-AAATGCACGATGA-TAATGC-ACAC-TTTAACCTTACA--T--GTCAA-CAAT-AT---G-AATTCTCGTCTA-TTAGGTG-TA-----T-TCTG
gi|13 : ATGAC-GG--T-----TGAATATTGAA-TAGTAATACTGT-T-AAG-AAATGCACGATGA-TAATGA-ACAC-TTTCAC-CTACA--T--GTCAA-CA-TGA----T-AATTCTTGTCTATTT---AG-TG-----TATTTGAGTG---AGAGGG
gi|19 : -AATATTGAA-TAGTAAATACTGTT-AAG-AAATGCACGATGA-TAATGA-ACAC-TTTCACCTTACA--T--GTCAA-CA-TGAT---G-AATTCTTGTCTATTTtttattcgtaaagtaa
gi|5 : ggttgTTGAA-AAGT---------T-GGG-AAATGCATGCTGA-TATTGC-ACAC-TTTCACCTTA-AAT---GCCAA-TATTGAT---G-AATTCTTGTCTATCTAGTAG-TA-----T-TTTGAGTG---AAAAGGGATA-TAATTTAA-------CAGCTAAACCCTTTAGCTAT--AT-A-TTAA----------TAAAAGGGG---TATTGAA--------CT-T--AAATTGGTGAATATTGGCAATAATCGC-------AA-------GCTCG----TGTATTTTTTACAACCAACTCGT----G-C-CA-ATTTTCACCAA------TATAAATTCAATAAGTTACCC-TATAa
gi|6 : caggTTGAA--AGT---------T-TGATAAATGCTGGATGA-T-TTGCCACACATTTC---CTGTAGAT--GCCAA-TATTGAT---G-AAATTCCGTCTTCTTTGGAGCTACCTCCC-TTTGAGATGAAAAAGGGAATGCCAATTTAGCACACTTAAA-TGACGCCTTTGGCT-A--CTCA-TCAACCGAAAAGGCC-----GGT---TATTGAA--------tta
gi|22 : ACCTTACA--T--GTCAA-CAT-GAT---T-AATTCTTGTCTATTTAGGTG-TA-----T-TCTGAGTG---AGAGGGgctcatattgtgatatataacatgtcgtttttgtaataatgcacacctcgccagctcgtgcttttta
gi|16 : TGACTA--TTAGCCAGT-ACGA-TT------------T-----GGT---TGG-GAA--------AT-TGCA-------------------------C-------AA-------GTTTGCGAGTGCA-TTTTT----CC----------------A-ATATTCACTAA------TATAAGTTTAACA----ACCC-Ttttattcgtaaagata
gi|9 : taaaTTGGC-----ATGAGTTAA----------C-----------TATAAAA--------ATGC--A-------------------------C-------GA-------GCTTGCGAGTGCA-TTTAGGCAGTCAACCAGT----G-C-CA-ATATTCACCAAAACATGTACAAGTTCAATA----ACCCTTGTATTATAccatataagttcaagtaccctat
gi|15 : ataaacttacgctaGCTAATAATAA---AA----------G-----GGT---TATTGAA--------CT-T--AAATTAGTTAAAT-------------T-------AATTTATTTGCTTG----TGCA-TTTTGACAGTCAACGAGT----GCT-GA-TCATTCACCTA------TATAACTTCAATtataagttcaacaaccctat
gi|16 : taagaactaaatcttaaaaA-TTAG----------T-----GAA---TATTGGAAAAATGCACT-C--G-------------------------C-------AA-------ACTTG----TGCA-ATTTCCCAACCAAATCGTACTGG-C-TA-ATAGTCACCA-------TATAAGTTCAAGT----ACCC-TATta
gi|18 : taaaagggttgttaaacttatTAT----------T-----GGTAAATATTGG------------C--A-------------------------C-------AG-------GTTGGC---TGTA-TTTTGA--GTCAACGAGT----G-T-CA-ATATTTACCAC------TAGAAGTTCAATA----ACCC-T
gi|9 : taataaaTGCA--------CT-C--G-------------------------C-------AA-------GCTCG----TGCA-TTTTTATAGTTAACTCAT----G-------------CCAA------TATAAGTTCAACA----ACCC-TATtaagttcaata
gi|23 : ataaacttacgctatataatacaagggttattgaacttgtacatgttttggtgaatattggcactggttgactgcctaaaTTTCACAGCCAGCTCGT----G-CCAATATATTTACCAA------TATAAGTTCAATA----ACCT-TATAC
gi|18 : TACAGCCAACCTGT----G-C-CA-ATATTTACCAA------TATAAGTTCAATA----
gi|5 : taataaaagggttattgaacttctagtggtaaatattgacactcgttgactcaaaaA-ATATTCACCAA------TTTAAGTTCAATA----CCCC-T
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ATGTATAATTATGTACCTAAGATTTAATCTACTTTTAAAAATGCATAAATTCTAGAGAGTGTTAGCGCTAGGTAGTCTGAAATTTTATTGAATGCTATCTTTGCATTGCGAAAATTGTGTGCACCCGAAACATTCTCGGTATGAGAATTCAATACTGACAATACCGTAACGACGTAAAACCTCGAAATCTTATGCGGCGGTCCACCAAATCTGACAGTGCTGG
Unaligned ( gi|11 ): TGAATACATTACATCTATTATATAGTTAATAAATATTCTATCATAAAATCTGCGTAAGATCTAGAGAATATTAACTCTCAATATCTTGATAATTTATTGAATGCTAACTTTGCATTGCGTAAATTGTGTGCGTCCG
Unaligned ( gi|12 ): AATAAAATAAATTTATCGTATAGCTAACAAATGCATGTGGTCTATTATAAAATCTGCGTAAAACCTAAAGAATGTTAGCGTTCAATATCCTAAGAATTTATTGATCGCTAACTTTACATTGCGTAAATTGTCAC
Unaligned ( gi|14 ): ATACTTTAGATACATGTATATAACAAAGGAATTGATGAGCTTATTCATCGGTGAATATTGGCACTCGTGAGTCAAAAAATTCCCTCGCAAGTTCAAGAATTTTTCAAACTGGACTCTGCCAATATTCACCA
Unaligned ( gi|20 ): ATCTGGCTCAGATGGACTATTAGCGTTCAATATCCTGAGAATGGTATTGATCGTTAACTTTGCAATTGCGTAAGTATGAGCGTTCA
Unaligned ( gi|21 ): TTGGTGAATAATGGTACTCATTCGTTGTTATATCCACTCGCAAGTTTGTAATTTTTCAAATCCAAATCTGCTAATAGGCACCAA
Alignments
lowQualScore : 777777777777777777777 1 1 1 222222222 333333 22222 333 1111 111111 333333333 11111 1 11111 11 3333333333333333 77777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 33 22 1 3 000000000000000000000 0 5 0 8 8 8 8 2 0 666666666 0 111111 00000 0 555 1 3 7777 1 8 1 1 5 555555 88 333333333 4 4 1 1 4 4 4 4 2 55 777 4 3 8888 1 3 5 22222 5 77 0 8 66666 1 88 99 33 5 5 0 9999999999999999 5 4 3 44444444444444444444444444444444444444444444444444444444444444444 4 33 1 7777 7777 3 44 999999 44 7777 4 4
lowQualScore : .. .. . . ..................... . . . . . . . . . ......... . ...... ..... . ... . . .... . . . . . ...... .. ......... . . . . . . . . . .. ... . . .... . . . ..... . .. . . ..... . .. .. .. . . . ................ . . . ................................................................. . .. . .... .... . .. ...... .. .... . .
lowQualScore : 55 88 0 8 000000000000000000000 8 5 0 0 0 0 0 5 0 888888888 8 222222 00000 8 666 0 8 0000 0 0 0 2 7 666666 11 999999999 4 4 7 0 4 4 4 0 5 55 000 0 4 5555 0 6 0 55555 7 99 0 0 77777 0 55 22 22 3 7 6 7777777777777777 0 4 6 33333333333333333333333333333333333333333333333333333333333333333 0 44 6 1111 1111 3 66 666666 66 7777 0 0
consensus : CACCCGAAACATTCCGAGTATGAGCGTTCAATATTAAC----------C----------GACGTAAACAAAGC-CAAAAT-GGCA-GACGACGGTCCTCC-GAATCTGACAG-AGCCGGTATTTGAGTAT-CATT-G-CAC--TAAAAACAAATA--GT-ATTT-----ACTTAAACAAA-ATGTTTTACTG----TACATANATTATGATG-TCCCCATTCACAAAATCAGTTTGCTTCATGCATCAATGACGGG-TT-----TAATATTGAAC-AGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCT-TANA--T---GCCAA-TATTGATG----AATTCTCGTCTATTTNGGAG-TA-----TTTTGAG-TG--AAAGGGAATG-CAATTTAACA-AC-----TGANTNCTTTA--GCTAN-ATGA-TTAA----------C-----GG-TT-ATTGAA-CT-------------------------CG------------C-------AA-------GCTCG----TGCA-TTTTNACAGCCAACTC----GT----GCCAAT-AT--TCACCAA------T--ATAAGTTCAATA----A-CCC-TATATTATA
Reference ( family-1252 ) : CACCCGAAACATTCCGAGTATGAGCGTTCANTATTAAC----------C----------GACGTAAACAAAGC-CAAAAT-GGCA-GACGACGGTCCTCC-GAATCTGACAG-AGCCGGTATTTGAGTAT-CATT-G-CAC--TAAAAACAAATA--GTTATTT-----ACTTAAACAAACGTGTTTTACTG----TACATANATTATGATG-TCCCCATTCACAAAATCNGTTTGCTTCATGCATCAATGACGGG-TT-----TAATATTGAAC-AGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCT-TACA--T---GCCAA-CATTGATG----AATTCTCGTCTATTTNGGAG-TA-----TTTTGAG-TG--AAAGGGAATA-TAATTTAACA-AC-----TGANTNCTTTA--GCTAN-ATGA-TTAA----------C-----GG-TT-ATTGAA-CT-------------------------CA------------C-------AA-------GCTCGC---TGCA-TTTTNACAGCCAACTC----GT----GCCAAT-AT--TCACCAA------T--ATAAGTTCAATA----A-CCC-TATACTATA
gi|1 : CGCCCGAAACATTCCGAGTA--------CAATATT------------------------GACGTAAACAA-GC-CAAAAT-GACA-GACGATGATCCTCC-GAATCTAACAG-ATTCGGTATTTGAGTAT-TTTTTG-CAC--TAAGAACAAATA--TTTATTTTATTTACTTAAACAATTTTGTTTTGCTACAACTACATAAATTATGATT-TCCCCATTCACAAAATCAGTTTGCTATATGCATCAATGACGGA-CT-----TAATATTGAAC-AGT---------T-AGG-AAATGCATGCTGA-TATTGC-ATAC-TTTCACAT-TACAATT---GCCAA-TATTGATT----AATTCTCGTCTATTTTGGAG-TA-----TTTTGAG-TT--AAAAGGAATG-CAATTGAAAA-AT-----TGACTACTTTG--GCTAA-ATGA-TTAA----------T-----GG-TT-ATTGAA-CT-------------------------TA------------C-------AA-------GCTCG----TGCA-TTTTTACAGCCAATTC----GT----GTAAAT-AT--TCACCAA------T--ACAAGTTCAATA----A-CCC-TATACCATA
gi|10 : AT-GGCA-GACGACGGTCCTCC-GAATCTGACAG-AGCCGGTATTTGAGTATATATT-G-TAC--TAAAAACAAATA--ATAATTT-----ACTTAAACAAA-ATGTATCACTG----TACATAAATTATGATG-TTCCCATTCACAAAATCAGTTTG
gi|13 : ATGACGG--TT-----GAATATTGAAT-AGTAATACTGT-T-AAG-AAATGCACGATGA-TAATGA-ACAC-TTTCACC--TACA--T---GTCAA-CA-TGAT-----AATTCTTGTCTATTTAGT-G-TA------TTTGAG-TG--AGAGGG
gi|14 : -TT-CTTGAA-CT-------------------------TG------------C-------GA-------G---G-----GAA-TTTTT-----TGACTCACGAGT----GCCAAT-AT--TCACCGA------TGAATAAGCTCATCA----ATTCC-TTTGTTATAtttattcgtaaagtaa
gi|15 : atactttagatacatgtaTAAGA-AC-----TAAAT-CTTAAAAGCTA--ATAA-TAAA----------A-----GGGTT-ATTGAA-CT-------------------------TAAATTAGTTAAATT-------AATTTATTTGCTTG----TGCA-TTTTGACAGTCAACGA----GT----GCTGATCAT--TCACCTA------T--ATAACTTCAATtttttcaaactggactctgccaatattcacca
gi|16 : -----TGACTA--TTA--GCCAGTACGA-TT------------T-----GG-TT-GGGAAA-TTG------------------------CA------------C-------AA-------GTTTGCGAGTGCA-TTTTT----------------------CCAAT-AT--TCACTAA------T--ATAAGTTTAACA----A-CCC-ta
gi|16 : taaaTGCA-CT-------------------------CG------------C-------AA-------ACTTG----TGCA-ATTTCCCAACCAAATC----GTACTGGCTAAT-AG--TCACCA-------T--ATAAGTTCAAGT----A-CCC-TATccatataagttcaagtaccctat
gi|17 : taaaagggttgttaaacttatattagtgaatattggaaaaaATGACGGG-TT-----GAATATTGAAT-AGT---------T-AAG-AAATGCACGATGA-TAATGC-ACAC-TTTAACCT-TACA--T---GTCAA-CAAT-ATG----AATTCTCGTCTA-TTAGGTG-TA-----TTCTG
gi|18 : T-ATTGG-----------------------------CA------------C-------AG-------GTTGGC---TGTA-TTTTGA--GTCAACGA----GT----GTCAAT-AT--TTACCAC------T--AGAAGTTCAATA----A-CCC-
gi|18 : taataaaACAGCCAACCT----GT----GCCAAT-AT--TTACCAA------T--ATAAGTTCAATA----tttaccaatataagttcaata
gi|19 : taataaaagggttattgaacttctagtggtaaatattgacactcgttgactcaaaatGG-TT-----GAATATTGAAT-AGTAAATACTGTT-AAG-AAATGCACGATGA-TAATGA-ACAC-TTTCACCT-TACA--T---GTCAA-CA-TGATG----AATTCTTGTCTATTT
gi|2 : CACCTAAAATATTCCGAGTATAAGCGTTCAATATTAAC----------CTAACCGTAACGACGTAAACAA-GC-CAAAAT-GGCA-GACGACAGTCCTCC-GAATCTGACAG-AGCAGGTGTTTGA-TAT-CAT-----------------AATA------TTT-----ACTTAAACAAA-ATGTGTTATTG----TACATATTTTATTATG-TCCCTATTCACAAAATTAGTTTGCTTCATGCATCAATGACGGG-TT-----TGATATTGAAC-AAT---------T-AAA-AGATGCATGCTGA-TTTTGC-ACAC-TTTCACCA-AAGA--T---GCCAA-TATTGATGAATAAATTGTCGTCTATTTTGGAG-TA-----TTTTGAG-TA--AAAAGGAATa
gi|22 : aatatcataatcattatatagctaacaattagtagaaaatctgcataaaatctagagaatgtttttgtacattaactttgcagtggtgtaaattgtgtgACCT-TACA--T---GTCAA-CAT-GATT----AATTCTTGTCTATTTAGGTG-TA-----TTCTGAG-TG--AGAGGG
gi|23 : TTTCACAGCCAGCTC----GT----GCCAAT-ATATTTACCAA------T--ATAAGTTCAATA----A-CCT-TATACtttattcgtaaagata
gi|3 : ATA--GTGATTT-----ACTTAAAGAAAC-TGTTT-ACTG----TTCATATATTATAATG-TCCGCATTCACAAAATCTGTTTGTTCCATGGATCAATGACGGG-TT-----TAATATTGGACCATT---------T-ATG-AAATACATGGTGA-TATTGC-ACAC-TTTCACAT-TAGA--T---GCCAA-TATTGATG----AATTCTCGTCCATGTTAAAA-CA-----TTTCGTG-TG--AAAAGGAACA-TAATTTAACA-AC-----TAGATGTTTTA--GCTAT-ATAC-TAAA----------C-----GG-GTAATTGAA-TT-------------------------TA------------TTGTGGTAAA-------TCTTGT-----CA-TTTTGACAGGCAGCTC----GT----TCTAAT-AT--TCATCAA------T--ATCAGTTCAATA----A-CCC-
gi|4 : acctgaaagaattgccggctcatttgAAC----------G----------GACGTAAACAAAGC-CAAAATAGGCAGGACGACGGGCCTCCAAAATCTGACAGAAACCGGTATTTGAGATT-CATT-GCCACTTTAAAAACAAATATCGT--TTT-----AC------------GTTTTACTG----TACATGGATTGTGATGCTCCCCATTCACAAAATTCGTTTGCTTCTTGCATCAATGACGGGATTACATGTAATATTGAAC-AAT---------TAAGA-AAATGCATGCTGATTATT-C-ACAC-TTCCACCT-TAGA--TTGGGCCAATTATTGATG----AATTCTTGACTA
gi|5 : TTGAAA-AGT---------T-GGG-AAATGCATGCTGA-TATTGC-ACAC-TTTCACCT-TAAA--T---GCCAA-TATTGATG----AATTCTTGTCTATCTAGTAG-TA-----TTTTGAG-TG--AAAAGGGATA-TAATTTAACA-GC-----TAAACCCTTTA--GCTAT-AT-A-TTAA----------TAAAAGGG-GT-ATTGAA-CTTAAATTGGTGAATATTGGCAATAATCG------------C-------AA-------GCTCG----TGTATTTTTTACAACCAACTC----GT----GCCAAT-TT--TCACCAA------T--ATAAATTCAATAAGTTA-CCC-TATATTAat
gi|6 : caggTTGAA--AGT---------T-TGATAAATGCTGGATGA-T-TTGCCACACATTTC--CTGTAGA--T---GCCAA-TATTGATG----AAATTCCGTCTTCTTTGGAGCTACCTCCCTTTGAGATGAAAAAGGGAATGCCAATTTAGCACACTTAAATGACGCCTTTG--GCTAC--TCA-TCAACCGAAAAGGCC-----GG-TT-ATTGAAGCT-------------------------CA------------T-------A
gi|7 : CACCCGAAACATTCTCGGTATGAGAATTCAATACTGACAATACCGTAAC----------GACGTA---AAACCTCGAAAT-CTTA-TGCGGCGGTCCACC-AAATCTGACAG-TGCTGGttgtgatatataacatgtcgtttttgtaataatgcacacctcgccagctcgtgcttttta
gi|8 : atgtataattatgtacctaagatttaatctacttttaaaaatgcataaattctagagagtgttagcgctaggtagtctgaaattttattgaatgctatctttgcattgcgaaaattgtgtgCACTCGAAACATTCCGAGTATGAGCGTTCACTATTAAC----------C----------GACATAAACA
gi|9 : atcgtacctttattatatagttaacaaatagtccgttataaaatctgcgtaaaatttagagagtgttagcattcaatatctaagaattcattgaaagctaactttccattgcgtaaattgtgtg-ATGAGTTAA----------C---------T-ATAAAA-ATG------------------------CA------------C-------GA-------GCTTGCGAGTGCA-TTTAGGCAGTCAACCA----GT----GCCAAT-AT--TCACCAAAACATGT--ACAAGTTCAATA----A-CCCTTGTATTATA
gi|9 : ataaacttacgctaTGCA-CT-------------------------CG------------C-------AA-------GCTCG----TGCA-TTTTTATAGTTAACTC----AT----GCCAA-------------------T--ATAAGTTCAACA----A-CCC-TATgccaatataagttcaacaaccctat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGAATACATTACATCTATTATATAGTTAATAAATATTCTATCATAAAATCTGCGTAAGATCTAGAGAATATTAACTCTCAATATCTTGATAATTTATTGAATGCTAACTTTGCATTGCGTAAATTGTGTGCGTCCG
Unaligned ( gi|12 ): AATAAAATAAATTTATCGTATAGCTAACAAATGCATGTGGTCTATTATAAAATCTGCGTAAAACCTAAAGAATGTTAGCGTTCAATATCCTAAGAATTTATTGATCGCTAACTTTACATTGCGTAAATTGTCAC
Unaligned ( gi|20 ): ATCTGGCTCAGATGGACTATTAGCGTTCAATATCCTGAGAATGGTATTGATCGTTAACTTTGCAATTGCGTAAGTATGAGCGTTCA
Unaligned ( gi|21 ): TTGGTGAATAATGGTACTCATTCGTTGTTATATCCACTCGCAAGTTTGTAATTTTTCAAATCCAAATCTGCTAATAGGCACCAA
Alignments
lowQualScore : 777777777777777777777 1 1 1 222222222 444444444444 1111 1111 111111 333333333 11111 1 11111 11 3333333333333333 44444444444444444444444444444444444444444444444444444
lowQualScore : 33 22 3 000000000000000000000 0 5 0 8 8 8 8 2 0 666666666 0 333333333333 0 0000 1 3 7777 1 8 1 1 5 555555 88 333333333 4 4 1 1 4 4 4 4 1 55 777 4 3 8888 1 3 5 22222 5 77 0 8 66666 1 88 99 33 5 5 0 9999999999999999 5 4 2 55555555555555555555555555555555555555555555555555555 3 44 2 33 6666666 5555 2 2 33 888888 44 3 7777 3 8
lowQualScore : .. .. . ..................... . . . . . . . . . ......... . ............ . .... . . .... . . . . . ...... .. ......... . . . . . . . . . .. ... . . .... . . . ..... . .. . . ..... . .. .. .. . . . ................ . . . ..................................................... . .. . .. ....... .... . . .. ...... .. . .... . .
lowQualScore : 55 88 8 000000000000000000000 8 5 0 0 0 0 0 5 0 888888888 8 222222222222 8 6666 0 8 0000 0 0 0 2 7 666666 11 999999999 4 4 7 0 4 4 4 0 0 55 000 0 4 5555 0 6 0 55555 7 99 0 0 77777 0 55 22 22 3 7 6 7777777777777777 0 4 9 22222222222222222222222222222222222222222222222222222 1 44 6 77 5555555 7777 7 7 77 222222 22 1 1111 6 0
consensus : CACCCGAAACATTCCGAGTATGAGCGTTCAATATTAAC----------C----------GACGTAAACAAAGC-CAAAAT-GGCA-GACGACGGTCCTCC-GAATCTGACAG-AGCCGGTATTTGAGTAT-CATT-G-CAC--TAAAAACAAATA--GT------A-TTTACTTAAACAAANT-GTTTTACTG----TACATANATTATGATG-TCCCCATTCACAAAATCAGTTTGCTTCATGCATCAATGACGGG-TT-----TAATATTGAAC-AGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCT-TANA--T---GCCAA-TATTGATG----AATTCTCGTCTATTTNGGAG-TA-----TTTTGAG-TG--AAAGGGAATG-CAATTTAACA-AC-----TGANTNCTTTA--GCTAN-ATGA-TTAA----------C-----GG-TT-ATTGAA-CT-C----------------G------------CAA---------G-CTCG----TGCA-TTTTTACAGCC--AACT-C----GT----GCCA-AT-AT--TCACCAA------T--ATAAG-TTCAATA----A-CCC-TATATTATA
Reference ( family-1252 ) : CACCCGAAACATTCCGAGTATGAGCGTTCAATATTAAC----------C----------GACGTAAACAAAGC-CAAAAT-GGCA-GACGACGGTCCTCC-GAATCTGACAG-AGCCGGTATTTGAGTAT-CATT-G-CAC--TAAAAACAAATA--GT------A-TTTACTTAAACAAAAT-GTTTTACTG----TACATANATTATGATG-TCCCCATTCACAAAATCAGTTTGCTTCATGCATCAATGACGGG-TT-----TAATATTGAAC-AGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCT-TANA--T---GCCAA-TATTGATG----AATTCTCGTCTATTTNGGAG-TA-----TTTTGAG-TG--AAAGGGAATG-CAATTTAACA-AC-----TGANTNCTTTA--GCTAN-ATGA-TTAA----------C-----GG-TT-ATTGAA-CT-C----------------G------------CAA---------G-CTCG----TGCA-TTTTNACAGCC--AACT-C----GT----GCCA-AT-AT--TCACCAA------T--ATAAG-TTCAATA----A-CCC-TATATTATA
gi|1 : CGCCCGAAACATTCCGAGTA--------CAATATT------------------------GACGTAAACAA-GC-CAAAAT-GACA-GACGATGATCCTCC-GAATCTAACAG-ATTCGGTATTTGAGTAT-TTTTTG-CAC--TAAGAACAAATA--TTTATTTTA-TTTACTTAAACAATTTTGTTTTGCTACAACTACATAAATTATGATT-TCCCCATTCACAAAATCAGTTTGCTATATGCATCAATGACGGA-CT-----TAATATTGAAC-AGT---------T-AGG-AAATGCATGCTGA-TATTGC-ATAC-TTTCACAT-TACAATT---GCCAA-TATTGATT----AATTCTCGTCTATTTTGGAG-TA-----TTTTGAG-TT--AAAAGGAATG-CAATTGAAAA-AT-----TGACTACTTTG--GCTAA-ATGA-TTAA----------T-----GG-TT-ATTGAA-CT-T----------------A------------CAA---------G-CTCG----TGCA-TTTTTACAGCC--AATT-C----GT----GTAA-AT-AT--TCACCAA------T--ACAAG-TTCAATA----A-CCC-TATACCATA
gi|10 : AT-GGCA-GACGACGGTCCTCC-GAATCTGACAG-AGCCGGTATTTGAGTATATATT-G-TAC--TAAAAACAAATA--AT------AATTTACTTAAACAAAAT-GTATCACTG----TACATAAATTATGATG-TTCCCATTCACAAAATCAGTTTG
gi|13 : ATGACGG--TT-----GAATATTGAAT-AGTAATACTGT-T-AAG-AAATGCACGATGA-TAATGA-ACAC-TTTCACC--TACA--T---GTCAA-CA-TGAT-----AATTCTTGTCTATTTAGT-G-TA------TTTGAG-TG--AGAGGG
gi|14 : -TT-CTTGAA-CT-T----------------G------------CGA---------G----G-----GAA-TTTTT-----T--GACT-CACGAGT----GCCA-AT-AT--TCACCGA------TGAATAAG-CTCATCA----ATTCC-TTTGTTATAtttattcgtaaagtaa
gi|14 : atactttagatacatgta-CT-C----------------G------------CAA---------G-TTCA----AGAA-TTTTT-CAAACTGGACT-C-----T----GCCA-AT-AT--TCACCAtttttcaaactggactctgccaatattcacca
gi|15 : atactttagatacatgtatataacaaaggaattgatgagcttattcatcggtgaatattggcactcgtgagtcaaaaaattccTAAGA-AC-----TAAAT-CTTAAAAGCTA--ATAA-TAAA----------A-----GGGTT-ATTGAA-CT-T----------------AAATTAGTTAAATTAATTTATTT--G-CTTG----TGCA-TTTTGACAGTC--AACG-A----GT----GCTG-ATCAT--TCACCTA------T--ATAAC-TTCAAT
gi|16 : -----TGACTA--TTA--GCCAGTACGA-TT------------T-----GG-TT-GGGAAA-TTGC----------------A------------CAA---------G-TTTGCGAGTGCA-TTTTT-------------------------CCA-AT-AT--TCACTAA------T--ATAAG-TTTAACA----A-CCC-ta
gi|16 : taaaTGCA-CT-C----------------G------------CAA---------A-CTTG----TGCA-ATTTCCCAACC--AAAT-C----GTACTGGCTA-AT-AG--TCACC-A------T--ATAAG-TTCAAGT----A-CCC-TATccatataagttcaagtaccctat
gi|17 : taaaagggttgttaaacttatattagtgaatattggaaaaaATGACGGG-TT-----GAATATTGAAT-AGT---------T-AAG-AAATGCACGATGA-TAATGC-ACAC-TTTAACCT-TACA--T---GTCAA-CAAT-ATG----AATTCTCGTCTA-TTAGGTG-TA-----TTCTG
gi|18 : T-ATTGG-----C----------------A------------CAG---------G-TTGGC---TGTA-TTTTGA--GTC--AACG-A----GT----GTCA-AT-AT--TTACCAC------T--AGAAG-TTCAATA----A-CCCTTTTATTA
gi|18 : ACAGCC--AACC-T----GT----GCCA-AT-AT--TTACCAA------T--ATAAG-TTCAATA----tttaccaatataagttcaata
gi|19 : taataaaagggttattgaacttctagtggtaaatattgacactcgttgactcaaaatGG-TT-----GAATATTGAAT-AGTAAATACTGTT-AAG-AAATGCACGATGA-TAATGA-ACAC-TTTCACCT-TACA--T---GTCAA-CA-TGATG----AATTCTTGTCTATTT
gi|2 : CACCTAAAATATTCCGAGTATAAGCGTTCAATATTAAC----------CTAACCGTAACGACGTAAACAA-GC-CAAAAT-GGCA-GACGACAGTCCTCC-GAATCTGACAG-AGCAGGTGTTTGA-TAT-CAT--------------------A--AT------A-TTTACTTAAACAAAAT-GTGTTATTG----TACATATTTTATTATG-TCCCTATTCACAAAATTAGTTTGCTTCATGCATCAATGACGGG-TT-----TGATATTGAAC-AAT---------T-AAA-AGATGCATGCTGA-TTTTGC-ACAC-TTTCACCA-AAGA--T---GCCAA-TATTGATGAATAAATTGTCGTCTATTTTGGAG-TA-----TTTTGAG-TA--AAAAGGAATa
gi|21 : aatatcataatcattatatagctaacaattagtagaaaatctgcataaaatctagagaatgtttttgtacattaactttgcagtggtgtaaattgtgtgA-CT-C----------------G------------CAA---------G-TTTG----TAAT-TTTTCAAATCC--AAAT-C-----T----GCTA-AT-AG--GCACCAA------
gi|22 : ttggtgaataatggtactcattcgttgttatatccACCT-TACA--T---GTCAA-CAT-GATT----AATTCTTGTCTATTTAGGTG-TA-----TTCTGAG-TG--AGAGGG
gi|23 : TTTCACAGCC--AGCT-C----GT----GCCA-AT-ATATTTACCAA------T--ATAAG-TTCAATA----A-CCT-TATAtttattcgtaaagata
gi|3 : ATA--GTG-----A-TTTACTTAAAGAAACT-GTTT-ACTG----TTCATATATTATAATG-TCCGCATTCACAAAATCTGTTTGTTCCATGGATCAATGACGGG-TT-----TAATATTGGACCATT---------T-ATG-AAATACATGGTGA-TATTGC-ACAC-TTTCACAT-TAGA--T---GCCAA-TATTGATG----AATTCTCGTCCATGTTAAAA-CA-----TTTCGTG-TG--AAAAGGAACA-TAATTTAACA-AC-----TAGATGTTTTA--GCTAT-ATAC-TAAA----------C-----GG-GTAATTGAA-TT-TATTGTG----------G------------TAA---------ATCTTG----T-CA-TTTTGACAGGC--AGCT-C----GT----TCTA-AT-AT--TCATCAA------T--ATCAG-TTCAATA----A-CCC-c
gi|4 : acctgaaagaattgccggctcatttgAAC----------G----------GACGTAAACAAAGC-CAAAATAGGCAGGACGACGGGCCTCCAAAATCTGACAGAAACCGGTATTTGAGATT-CATT-GCCACTTTAAAAACAAATATCGT--------TTTAC------------GTTTTACTG----TACATGGATTGTGATGCTCCCCATTCACAAAATTCGTTTGCTTCTTGCATCAATGACGGGATTACATGTAATATTGAAC-AAT---------TAAGA-AAATGCATGCTGATTATT-C-ACAC-TTCCACCT-TAGA--TTGGGCCAATTATTGATG----AATTCTTGACTA
gi|5 : TTGAAA-AGT---------T-GGG-AAATGCATGCTGA-TATTGC-ACAC-TTTCACCT-TAAA--T---GCCAA-TATTGATG----AATTCTTGTCTATCTAGTAG-TA-----TTTTGAG-TG--AAAAGGGATA-TAATTTAACA-GC-----TAAACCCTTTA--GCTAT-AT-A-TTAA----------TAAAAGGG-GT-ATTGAA-CT-TAAATTGGTGAATATTGG------------CAATAATCGCAAG-CTCG----TGTATTTTTTACAACC--AACT-C----GT----GCCA-AT-TT--TCACCAA------T--ATAAA-TTCAATAAGTTA-CCC-TATATTAat
gi|6 : caggTTGAA--AGT---------T-TGATAAATGCTGGATGA-T-TTGCCACACATTTC--CTGTAGA--T---GCCAA-TATTGATG----AAATTCCGTCTTCTTTGGAGCTACCTCCCTTTGAGATGAAAAAGGGAATGCCAATTTAGCACACTTAAATGACGCCTTTG--GCTAC--TCA-TCAACCGAAAAGGCC-----GG-TT-ATTGAAGCT-C----------------
gi|6 : GAG-CT-G----------------G------------CGA---------G-GT-G----TGCA-TTATTACAAA---AACGAC----AT----GTTATAT-AT---CAC-AA------T--ATGAGCTTCAATA----A-CCatattgtgatatataacatgtcgtttttgtaataatgcacacctcgccagctcgtgcttttta
gi|7 : ttgaaagtttgataaatgctggatgatttgccacacatttcctgtagatgccaatattgatgaaattccgtcttctttggagctacctccctttgagatgaaaaagggaatgccaatttagcacacttaaatgacgcctttggctactcatcaaccgaaaaggccCACCCGAAACATTCTCGGTATGAGAATTCAATACTGACAATACCGTAAC----------GACGTA---AAACCTCGAAAT-CTTA-TGCGGCGGTCCACC-AAATCTGACAG-TGCTGGgtgcttttta
gi|8 : atgtataattatgtacctaagatttaatctacttttaaaaatgcataaattctagagagtgttagcgctaggtagtctgaaattttattgaatgctatctttgcattgcgaaaattgtgtgCACTCGAAACATTCCGAGTATGAGCGTTCACTATTAAC----------C----------GACATAAACA
gi|9 : atcgtacctttattatatagttaacaaatagtccgttataaaatctgcgtaaaatttagagagtgttagcattcaatatctaagaattcattgaaagctaactttccattgcgtaaattgtgtg-ATGAGTTAA----------C---------T-ATAAAA-ATGC----------------A------------CGA---------G-CTTGCGAGTGCA-TTTAGGCAGTC--AACC-A----GT----GCCA-AT-AT--TCACCAAAACATGT--ACAAG-TTCAATA----A-CCCTTGTATTATA
gi|9 : ataaacttacgctaTGCA-CT-C----------------G------------CAA---------G-CTCG----TGCA-TTTTTATAGTT--AACT-C----AT----G--------------CCAA------T--ATAAG-TTCAACA----A-CCC-TATgccaatataagttcaacaaccctat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGAATACATTACATCTATTATATAGTTAATAAATATTCTATCATAAAATCTGCGTAAGATCTAGAGAATATTAACTCTCAATATCTTGATAATTTATTGAATGCTAACTTTGCATTGCGTAAATTGTGTGCGTCCG
Unaligned ( gi|12 ): AATAAAATAAATTTATCGTATAGCTAACAAATGCATGTGGTCTATTATAAAATCTGCGTAAAACCTAAAGAATGTTAGCGTTCAATATCCTAAGAATTTATTGATCGCTAACTTTACATTGCGTAAATTGTCAC
Unaligned ( gi|20 ): ATCTGGCTCAGATGGACTATTAGCGTTCAATATCCTGAGAATGGTATTGATCGTTAACTTTGCAATTGCGTAAGTATGAGCGTTCA
Alignments
lowQualScore : 777777777777777777777 1 1 1 2222222222 444444444444 1111 111111 333333333 11111 1 11111 11 3333333333333333 555555555555555555555555555555555555555555555 1111111 1111
lowQualScore : 33 22 3 000000000000000000000 0 5 0 8 8 8 8 2 0 3333333333 0 333333333333 0 8888 1 3 7777 1 8 1 1 5 555555 88 333333333 4 4 1 1 4 4 4 4 1 55 777 4 3 8888 1 3 5 22222 5 77 0 8 66666 1 88 99 33 5 5 0 9999999999999999 5 4 2 000000000000000000000000000000000000000000000 0000000 33 5 6666 0 3 66 2 33 6666666 5555 2 2 33 888888 44 3 7777 3 8
lowQualScore : .. .. . ..................... . . . . . . . . . .......... . ............ . .... . . .... . . . . . ...... .. ......... . . . . . . . . . .. ... . . .... . . . ..... . .. . . ..... . .. .. .. . . . ................ . . . ............................................. ....... .. . .... . . .. . .. ....... .... . . .. ...... .. . .... . .
lowQualScore : 55 88 8 000000000000000000000 8 5 0 0 0 0 0 5 0 8888888888 8 222222222222 8 6666 0 8 0000 0 0 0 2 7 666666 11 999999999 4 4 7 0 4 4 4 0 0 55 000 0 4 5555 0 6 0 55555 7 99 0 0 77777 0 55 22 22 3 7 6 7777777777777777 0 4 9 888888888888888888888888888888888888888888888 0000000 88 1 2222 2 1 11 6 77 5555555 7777 7 7 77 222222 22 1 1111 6 0
consensus : CACCCGAAACATTCCGAGTATGAGCGTTCAATATTAAC----------C----------GACGTAAACAAAGC-CAAAAT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTAT-CATT-GC-ACT--AAAAACAAATA--GT------A-TTTACTTAAACAAANT-GTTTTACTG----TACATANATTATGATG-TCCCCATTCACAAAATCAGTTTGCTTCATGCATCAATGACGGG-TT-----TAATATTGAAC-AGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCT-TANA--T---GCCAA-TATTGATG----AATTCTCGTCTATTTNGGAG-TA-----TTTTGAG-TG--AAAGGGAATG-CAATTTAACA-AC-----TGANTNCTTTA--GCTAN-ATGA-TTAA----------C-----GG-TT-ATTGAA-CT-------------------------C------G------------CAA-------G-CTCG----TGCA-TTTTT-ACAGCC--AACT-C----GT----GCCA-AT-AT--TCACCAA------T--ATAAG-TTCAATA----A-CCC-TATATTATA
Reference ( family-1252 ) : CACCCGAAACATTCCGAGTATGAGCGTTCAATATTAAC----------C----------GACGTAAACAAAGC-CAAAAT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTAT-CATT-GC-ACT--AAAAACAAATA--GT------A-TTTACTTAAACAAANT-GTTTTACTG----TACATANATTATGATG-TCCCCATTCACAAAATCAGTTTGCTTCATGCATCAATGACGGG-TT-----TAATATTGAAC-AGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCT-TANA--T---GCCAA-TATTGATG----AATTCTCGTCTATTTNGGAG-TA-----TTTTGAG-TG--AAAGGGAATG-CAATTTAACA-AC-----TGANTNCTTTA--GCTAN-ATGA-TTAA----------C-----GG-TT-ATTGAA-CT-------------------------C------G------------CAA-------G-CTCG----TGCA-TTTTT-ACAGCC--AACT-C----GT----GCCA-AT-AT--TCACCAA------T--ATAAG-TTCAATA----A-CCC-TATATTATA
gi|1 : CGCCCGAAACATTCCGAGTA--------CAATATT------------------------GACGTAAACAA-GC-CAAAAT-GACAG-ACGATGATCCTCCGAA-TCTAACAGAT-TCGGTATTTGAGTAT-TTTTTGC-ACT--AAGAACAAATA--TTTATTTTA-TTTACTTAAACAATTTTGTTTTGCTACAACTACATAAATTATGATT-TCCCCATTCACAAAATCAGTTTGCTATATGCATCAATGACGGA-CT-----TAATATTGAAC-AGT---------T-AGG-AAATGCATGCTGA-TATTGC-ATAC-TTTCACAT-TACAATT---GCCAA-TATTGATT----AATTCTCGTCTATTTTGGAG-TA-----TTTTGAG-TT--AAAAGGAATG-CAATTGAAAA-AT-----TGACTACTTTG--GCTAA-ATGA-TTAA----------T-----GG-TT-ATTGAA-CT-------------------------T------A------------CAA-------G-CTCG----TGCA-TTTTT-ACAGCC--AATT-C----GT----GTAA-AT-AT--TCACCAA------T--ACAAG-TTCAATA----A-CCC-TATACCATA
gi|10 : AT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTATATATT-GT-ACT--AAAAACAAATA--AT------AATTTACTTAAACAAAAT-GTATCACTG----TACATAAATTATGATG-TTCCCATTCACAAAATCAGTTTG
gi|13 : ATGACGG--TT-----GAATATTGAAT-AGTAATACTGT-T-AAG-AAATGCACGATGA-TAATGA-ACAC-TTTCACC--TACA--T---GTCAA-CA-TGAT-----AATTCTTGTCTATTTAGT-G-TA------TTTGAG-TG--AGAGGG
gi|14 : -TT-CTTGAA-CT-------------------------T------G------------CGA-------G----G-----GAA-TTTTT------T--GACT-CACGAGT----GCCA-AT-AT--TCACCGA------TGAATAAG-CTCATCA----ATTCC-TTTGTTATAtttattcgtaaagtaa
gi|14 : atactttagatacatgta-CT-------------------------C------G------------CAA-------G-TTCA----AGAA-TTTTT--CAAACTGGACT-C-----T----GCCA-AT-AT--TCACCAtttttcaaactggactctgccaatattcacca
gi|15 : atactttagatacatgtatataacaaaggaattgatgagcttattcatcggtgaatattggcactcgtgagtcaaaaaattccTAAGA-AC-----TAAAT-CTTAAAAGCTA--ATAA-TAAA----------A-----GGGTT-ATTGAA-CT-------------------------T------AAATTAGTTAAATTAATTTATTTG-CTTG----TGCA-TTTTG-ACAGTC--AACG-A----GT----GCTG-ATCAT--TCACCTA------T--ATAAC-TTCAAT
gi|16 : -----TGACTA--TTA--GCCAGTACGA-TT------------T-----GG-TT-GGGAAA-TTG------------------------C------A------------CAA-------G-TTTGCGAGTGCA-TTTTT--------------------------CCA-AT-AT--TCACTAA------T--ATAAG-TTTAACA----A-CCC-ta
gi|16 : taaaTGCA-CT-------------------------C------G------------CAA-------A-CTTG----TGCA-ATTTC-CCAACC--AAAT-C----GTACTGGCTA-AT-AG--TCACC-A------T--ATAAG-TTCAAGT----A-CCC-TATccatataagttcaagtaccctat
gi|17 : taaaagggttgttaaacttatattagtgaatattggaaaaaATGACGGG-TT-----GAATATTGAAT-AGT---------T-AAG-AAATGCACGATGA-TAATGC-ACAC-TTTAACCT-TACA--T---GTCAA-CAAT-ATG----AATTCTCGTCTA-TTAGGTG-TA-----TTCTG
gi|18 : T-ATTGG-----------------------------C------A------------CAG-------G-TTGGC---TGTA-TTTTG-A--GTC--AACG-A----GT----GTCA-AT-AT--TTACCAC------T--AGAAG-TTCAATA----A-CCCTTTTATTA
gi|18 : T-ACAGCC--AACC-T----GT----GCCA-AT-AT--TTACCAA------T--ATAAG-TTCAATA----tttaccaatataagttcaata
gi|19 : taataaaagggttattgaacttctagtggtaaatattgacactcgttgactcaaaaGG-TT-----GAATATTGAAT-AGTAAATACTGTT-AAG-AAATGCACGATGA-TAATGA-ACAC-TTTCACCT-TACA--T---GTCAA-CA-TGATG----AATTCTTGTCTATTT
gi|2 : CACCTAAAATATTCCGAGTATAAGCGTTCAATATTAAC----------CTAACCGTAACGACGTAAACAA-GC-CAAAAT-GGCAG-ACGACAGTCCTCCGAA-TCTGACAGAG-CAGGTGTTTGA-TAT-CAT--------------------A--AT------A-TTTACTTAAACAAAAT-GTGTTATTG----TACATATTTTATTATG-TCCCTATTCACAAAATTAGTTTGCTTCATGCATCAATGACGGG-TT-----TGATATTGAAC-AAT---------T-AAA-AGATGCATGCTGA-TTTTGC-ACAC-TTTCACCA-AAGA--T---GCCAA-TATTGATGAATAAATTGTCGTCTATTTTGGAG-TA-----TTTTGAG-TA--AAAAGGAATa
gi|21 : aatatcataatcattatatagctaacaattagtagaaaatctgcataaaatctagagaatgtttttgtacattaactttgcagtggtgtaaattgtgtgA-CT-------------------------C------G------------CAA-------G-TTTG----TA-A-TTTTTCAAATCC--AAAT-C-----T----GCTA-AT-AG--GCACCAA------
gi|22 : ttggtgaataatggtactcattcgttgttatatccACCT-TACA--T---GTCAA-CAT-GATT----AATTCTTGTCTATTTAGGTG-TA-----TTCTGAG-TG--AGAGGG
gi|23 : TTTC-ACAGCC--AGCT-C----GT----GCCA-AT-ATATTTACCAA------T--ATAAG-TTCAATA----A-CCT-TATAtttattcgtaaagata
gi|3 : ATA--GTG-----A-TTTACTTAAAGAAACT-GTTT-ACTG----TTCATATATTATAATG-TCCGCATTCACAAAATCTGTTTGTTCCATGGATCAATGACGGG-TT-----TAATATTGGACCATT---------T-ATG-AAATACATGGTGA-TATTGC-ACAC-TTTCACAT-TAGA--T---GCCAA-TATTGATG----AATTCTCGTCCATGTTAAAA-CA-----TTTCGTG-TG--AAAAGGAACA-TAATTTAACA-AC-----TAGATGTTTTA--GCTAT-ATAC-TAAA----------C-----GG-GTAATTGAA-TT-------------------------TATTGTGG------------TAA-------ATCTTG----T-CA-TTTTG-ACAGGC--AGCT-C----GT----TCTA-AT-AT--TCATCAA------T--ATCAG-TTCAATA----A-CCC-c
gi|4 : acctgaaagaattgccggctcatttgAAC----------G----------GACGTAAACAAAGC-CAAAATAGGCAGGACGACGGGCCTCCAAAATCTGACAGAAACCGGTATTTGAGATT-CATT-GCCACTTTAAAAACAAATATCGT--------TTTAC------------GTTTTACTG----TACATGGATTGTGATGCTCCCCATTCACAAAATTCGTTTGCTTCTTGCATCAATGACGGGATTACATGTAATATTGAAC-AAT---------TAAGA-AAATGCATGCTGATTATT-C-ACAC-TTCCACCT-TAGA--TTGGGCCAATTATTGATG----AATTCTTGACTA
gi|5 : TTGAAA-AGT---------T-GGG-AAATGCATGCTGA-TATTGC-ACAC-TTTCACCT-TAAA--T---GCCAA-TATTGATG----AATTCTTGTCTATCTAGTAG-TA-----TTTTGAG-TG--AAAAGGGATA-TAATTTAACA-GC-----TAAACCCTTTA--GCTAT-AT-A-TTAA----------TAAAAGGG-GT-ATTGAA-CTTAAATTGGTGAATATTGGCAATAATC------G------------CAA-------G-CTCG----TGTATTTTTT-ACAACC--AACT-C----GT----GCCA-AT-TT--TCACCAA------T--ATAAA-TTCAATAAGTTA-CCC-TATATTAat
gi|6 : caggTTGAA--AGT---------T-TGATAAATGCTGGATGA-T-TTGCCACACATTTC--CTGTAGA--T---GCCAA-TATTGATG----AAATTCCGTCTTCTTTGGAGCTACCTCCCTTTGAGATGAAAAAGGGAATGCCAATTTAGCACACTTAAATGACGCCTTTG--GCTAC--TCA-TCAACCGAAAAGGCC-----GG-TT-ATTGAAGCT-------------------------C------
gi|6 : GAG-CT-------------------------G------G------------CGA-------G-GT-G----TGCA-TTATT-ACAAA---AACGAC----AT----GTTATAT-AT---CAC-AA------T--ATGAGCTTCAATA----A-CCatattgtgatatataacatgtcgtttttgtaataatgcacacctcgccagctcgtgcttttta
gi|7 : ttgaaagtttgataaatgctggatgatttgccacacatttcctgtagatgccaatattgatgaaattccgtcttctttggagctacctccctttgagatgaaaaagggaatgccaatttagcacacttaaatgacgcctttggctactcatcaaccgaaaaggccCACCCGAAACATTCTCGGTATGAGAATTCAATACTGACAATACCGTAAC----------GACGTA---AAACCTCGAAAT-CTTAT-GCGGCGGTCCACCAAA-TCTGACAGTG-CTGGgtgcttttta
gi|8 : atgtataattatgtacctaagatttaatctacttttaaaaatgcataaattctagagagtgttagcgctaggtagtctgaaattttattgaatgctatctttgcattgcgaaaattgtgtgCACTCGAAACATTCCGAGTATGAGCGTTCACTATTAAC----------C----------GACATAAACA
gi|9 : atcgtacctttattatatagttaacaaatagtccgttataaaatctgcgtaaaatttagagagtgttagcattcaatatctaagaattcattgaaagctaactttccattgcgtaaattgtgtg-ATGAGTTAA----------C---------T-ATAAAA-ATG------------------------C------A------------CGA-------G-CTTGCGAGTGCA-TTTAG-GCAGTC--AACC-A----GT----GCCA-AT-AT--TCACCAAAACATGT--ACAAG-TTCAATA----A-CCCTTGTATTATA
gi|9 : ataaacttacgctaTGCA-CT-------------------------C------G------------CAA-------G-CTCG----TGCA-TTTTT-ATAGTT--AACT-C----AT----G--------------CCAA------T--ATAAG-TTCAACA----A-CCC-TATgccaatataagttcaacaaccctat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGAATACATTACATCTATTATATAGTTAATAAATATTCTATCATAAAATCTGCGTAAGATCTAGAGAATATTAACTCTCAATATCTTGATAATTTATTGAATGCTAACTTTGCATTGCGTAAATTGTGTGCGTCCG
Unaligned ( gi|12 ): AATAAAATAAATTTATCGTATAGCTAACAAATGCATGTGGTCTATTATAAAATCTGCGTAAAACCTAAAGAATGTTAGCGTTCAATATCCTAAGAATTTATTGATCGCTAACTTTACATTGCGTAAATTGTCAC
Unaligned ( gi|20 ): ATCTGGCTCAGATGGACTATTAGCGTTCAATATCCTGAGAATGGTATTGATCGTTAACTTTGCAATTGCGTAAGTATGAGCGTTCA
Alignments
lowQualScore : 777777777777777777777 1 1 1 2222222222 444444444444 1111 111111 333333333 11111 1 11111 11 3333333333333333 555555555555555555555555555555555555555555555 1111111 1111
lowQualScore : 33 22 3 000000000000000000000 0 5 0 8 8 8 8 2 0 3333333333 0 333333333333 0 8888 1 3 7777 1 8 1 1 5 555555 88 333333333 4 4 1 1 4 4 4 4 1 55 777 4 3 8888 1 3 5 22222 5 77 0 8 66666 1 88 99 33 5 5 0 9999999999999999 5 4 2 000000000000000000000000000000000000000000000 0000000 33 5 6666 0 3 66 2 33 6666666 5555 2 2 33 888888 44 3 7777 3 8
lowQualScore : .. .. . ..................... . . . . . . . . . .......... . ............ . .... . . .... . . . . . ...... .. ......... . . . . . . . . . .. ... . . .... . . . ..... . .. . . ..... . .. .. .. . . . ................ . . . ............................................. ....... .. . .... . . .. . .. ....... .... . . .. ...... .. . .... . .
lowQualScore : 55 88 8 000000000000000000000 8 5 0 0 0 0 0 5 0 8888888888 8 222222222222 8 6666 0 8 0000 0 0 0 2 7 666666 11 999999999 4 4 7 0 4 4 4 0 0 55 000 0 4 5555 0 6 0 55555 7 99 0 0 77777 0 55 22 22 3 7 6 7777777777777777 0 4 9 888888888888888888888888888888888888888888888 0000000 88 1 2222 2 1 11 6 77 5555555 7777 7 7 77 222222 22 1 1111 6 0
consensus : CACCCGAAACATTCCGAGTATGAGCGTTCAATATTAAC----------C----------GACGTAAACAAAGC-CAAAAT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTAT-CATT-GC-ACT--AAAAACAAATA--GT------A-TTTACTTAAACAAANT-GTTTTACTG----TACATANATTATGATG-TCCCCATTCACAAAATCAGTTTGCTTCATGCATCAATGACGGG-TT-----TAATATTGAAC-AGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCT-TANA--T---GCCAA-TATTGATG----AATTCTCGTCTATTTNGGAG-TA-----TTTTGAG-TG--AAAGGGAATG-CAATTTAACA-AC-----TGANTNCTTTA--GCTAN-ATGA-TTAA----------C-----GG-TT-ATTGAA-CT-------------------------C------G------------CAA-------G-CTCG----TGCA-TTTTT-ACAGCC--AACT-C----GT----GCCA-AT-AT--TCACCAA------T--ATAAG-TTCAATA----A-CCC-TATATTATA
Reference ( family-1252 ) : CACCCGAAACATTCCGAGTATGAGCGTTCAATATTAAC----------C----------GACGTAAACAAAGC-CAAAAT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTAT-CATT-GC-ACT--AAAAACAAATA--GT------A-TTTACTTAAACAAANT-GTTTTACTG----TACATANATTATGATG-TCCCCATTCACAAAATCAGTTTGCTTCATGCATCAATGACGGG-TT-----TAATATTGAAC-AGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCT-TANA--T---GCCAA-TATTGATG----AATTCTCGTCTATTTNGGAG-TA-----TTTTGAG-TG--AAAGGGAATG-CAATTTAACA-AC-----TGANTNCTTTA--GCTAN-ATGA-TTAA----------C-----GG-TT-ATTGAA-CT-------------------------C------G------------CAA-------G-CTCG----TGCA-TTTTT-ACAGCC--AACT-C----GT----GCCA-AT-AT--TCACCAA------T--ATAAG-TTCAATA----A-CCC-TATATTATA
gi|1 : CGCCCGAAACATTCCGAGTA--------CAATATT------------------------GACGTAAACAA-GC-CAAAAT-GACAG-ACGATGATCCTCCGAA-TCTAACAGAT-TCGGTATTTGAGTAT-TTTTTGC-ACT--AAGAACAAATA--TTTATTTTA-TTTACTTAAACAATTTTGTTTTGCTACAACTACATAAATTATGATT-TCCCCATTCACAAAATCAGTTTGCTATATGCATCAATGACGGA-CT-----TAATATTGAAC-AGT---------T-AGG-AAATGCATGCTGA-TATTGC-ATAC-TTTCACAT-TACAATT---GCCAA-TATTGATT----AATTCTCGTCTATTTTGGAG-TA-----TTTTGAG-TT--AAAAGGAATG-CAATTGAAAA-AT-----TGACTACTTTG--GCTAA-ATGA-TTAA----------T-----GG-TT-ATTGAA-CT-------------------------T------A------------CAA-------G-CTCG----TGCA-TTTTT-ACAGCC--AATT-C----GT----GTAA-AT-AT--TCACCAA------T--ACAAG-TTCAATA----A-CCC-TATACCATA
gi|10 : AT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTATATATT-GT-ACT--AAAAACAAATA--AT------AATTTACTTAAACAAAAT-GTATCACTG----TACATAAATTATGATG-TTCCCATTCACAAAATCAGTTTG
gi|13 : ATGACGG--TT-----GAATATTGAAT-AGTAATACTGT-T-AAG-AAATGCACGATGA-TAATGA-ACAC-TTTCACC--TACA--T---GTCAA-CA-TGAT-----AATTCTTGTCTATTTAGT-G-TA------TTTGAG-TG--AGAGGG
gi|14 : -TT-CTTGAA-CT-------------------------T------G------------CGA-------G----G-----GAA-TTTTT------T--GACT-CACGAGT----GCCA-AT-AT--TCACCGA------TGAATAAG-CTCATCA----ATTCC-TTTGTTATAtttattcgtaaagtaa
gi|14 : atactttagatacatgta-CT-------------------------C------G------------CAA-------G-TTCA----AGAA-TTTTT--CAAACTGGACT-C-----T----GCCA-AT-AT--TCACCAtttttcaaactggactctgccaatattcacca
gi|15 : atactttagatacatgtatataacaaaggaattgatgagcttattcatcggtgaatattggcactcgtgagtcaaaaaattccTAAGA-AC-----TAAAT-CTTAAAAGCTA--ATAA-TAAA----------A-----GGGTT-ATTGAA-CT-------------------------T------AAATTAGTTAAATTAATTTATTTG-CTTG----TGCA-TTTTG-ACAGTC--AACG-A----GT----GCTG-ATCAT--TCACCTA------T--ATAAC-TTCAAT
gi|16 : -----TGACTA--TTA--GCCAGTACGA-TT------------T-----GG-TT-GGGAAA-TTG------------------------C------A------------CAA-------G-TTTGCGAGTGCA-TTTTT--------------------------CCA-AT-AT--TCACTAA------T--ATAAG-TTTAACA----A-CCC-ta
gi|16 : taaaTGCA-CT-------------------------C------G------------CAA-------A-CTTG----TGCA-ATTTC-CCAACC--AAAT-C----GTACTGGCTA-AT-AG--TCACC-A------T--ATAAG-TTCAAGT----A-CCC-TATccatataagttcaagtaccctat
gi|17 : taaaagggttgttaaacttatattagtgaatattggaaaaaATGACGGG-TT-----GAATATTGAAT-AGT---------T-AAG-AAATGCACGATGA-TAATGC-ACAC-TTTAACCT-TACA--T---GTCAA-CAAT-ATG----AATTCTCGTCTA-TTAGGTG-TA-----TTCTG
gi|18 : T-ATTGG-----------------------------C------A------------CAG-------G-TTGGC---TGTA-TTTTG-A--GTC--AACG-A----GT----GTCA-AT-AT--TTACCAC------T--AGAAG-TTCAATA----A-CCCTTTTATTA
gi|18 : T-ACAGCC--AACC-T----GT----GCCA-AT-AT--TTACCAA------T--ATAAG-TTCAATA----tttaccaatataagttcaata
gi|19 : taataaaagggttattgaacttctagtggtaaatattgacactcgttgactcaaaaGG-TT-----GAATATTGAAT-AGTAAATACTGTT-AAG-AAATGCACGATGA-TAATGA-ACAC-TTTCACCT-TACA--T---GTCAA-CA-TGATG----AATTCTTGTCTATTT
gi|2 : CACCTAAAATATTCCGAGTATAAGCGTTCAATATTAAC----------CTAACCGTAACGACGTAAACAA-GC-CAAAAT-GGCAG-ACGACAGTCCTCCGAA-TCTGACAGAG-CAGGTGTTTGA-TAT-CAT--------------------A--AT------A-TTTACTTAAACAAAAT-GTGTTATTG----TACATATTTTATTATG-TCCCTATTCACAAAATTAGTTTGCTTCATGCATCAATGACGGG-TT-----TGATATTGAAC-AAT---------T-AAA-AGATGCATGCTGA-TTTTGC-ACAC-TTTCACCA-AAGA--T---GCCAA-TATTGATGAATAAATTGTCGTCTATTTTGGAG-TA-----TTTTGAG-TA--AAAAGGAATa
gi|21 : aatatcataatcattatatagctaacaattagtagaaaatctgcataaaatctagagaatgtttttgtacattaactttgcagtggtgtaaattgtgtgA-CT-------------------------C------G------------CAA-------G-TTTG----TA-A-TTTTTCAAATCC--AAAT-C-----T----GCTA-AT-AG--GCACCAA------
gi|22 : ttggtgaataatggtactcattcgttgttatatccACCT-TACA--T---GTCAA-CAT-GATT----AATTCTTGTCTATTTAGGTG-TA-----TTCTGAG-TG--AGAGGG
gi|23 : TTTC-ACAGCC--AGCT-C----GT----GCCA-AT-ATATTTACCAA------T--ATAAG-TTCAATA----A-CCT-TATAtttattcgtaaagata
gi|3 : ATA--GTG-----A-TTTACTTAAAGAAACT-GTTT-ACTG----TTCATATATTATAATG-TCCGCATTCACAAAATCTGTTTGTTCCATGGATCAATGACGGG-TT-----TAATATTGGACCATT---------T-ATG-AAATACATGGTGA-TATTGC-ACAC-TTTCACAT-TAGA--T---GCCAA-TATTGATG----AATTCTCGTCCATGTTAAAA-CA-----TTTCGTG-TG--AAAAGGAACA-TAATTTAACA-AC-----TAGATGTTTTA--GCTAT-ATAC-TAAA----------C-----GG-GTAATTGAA-TT-------------------------TATTGTGG------------TAA-------ATCTTG----T-CA-TTTTG-ACAGGC--AGCT-C----GT----TCTA-AT-AT--TCATCAA------T--ATCAG-TTCAATA----A-CCC-c
gi|4 : acctgaaagaattgccggctcatttgAAC----------G----------GACGTAAACAAAGC-CAAAATAGGCAGGACGACGGGCCTCCAAAATCTGACAGAAACCGGTATTTGAGATT-CATT-GCCACTTTAAAAACAAATATCGT--------TTTAC------------GTTTTACTG----TACATGGATTGTGATGCTCCCCATTCACAAAATTCGTTTGCTTCTTGCATCAATGACGGGATTACATGTAATATTGAAC-AAT---------TAAGA-AAATGCATGCTGATTATT-C-ACAC-TTCCACCT-TAGA--TTGGGCCAATTATTGATG----AATTCTTGACTA
gi|5 : TTGAAA-AGT---------T-GGG-AAATGCATGCTGA-TATTGC-ACAC-TTTCACCT-TAAA--T---GCCAA-TATTGATG----AATTCTTGTCTATCTAGTAG-TA-----TTTTGAG-TG--AAAAGGGATA-TAATTTAACA-GC-----TAAACCCTTTA--GCTAT-AT-A-TTAA----------TAAAAGGG-GT-ATTGAA-CTTAAATTGGTGAATATTGGCAATAATC------G------------CAA-------G-CTCG----TGTATTTTTT-ACAACC--AACT-C----GT----GCCA-AT-TT--TCACCAA------T--ATAAA-TTCAATAAGTTA-CCC-TATATTAat
gi|6 : caggTTGAA--AGT---------T-TGATAAATGCTGGATGA-T-TTGCCACACATTTC--CTGTAGA--T---GCCAA-TATTGATG----AAATTCCGTCTTCTTTGGAGCTACCTCCCTTTGAGATGAAAAAGGGAATGCCAATTTAGCACACTTAAATGACGCCTTTG--GCTAC--TCA-TCAACCGAAAAGGCC-----GG-TT-ATTGAAGCT-------------------------C------
gi|6 : GAG-CT-------------------------G------G------------CGA-------G-GT-G----TGCA-TTATT-ACAAA---AACGAC----AT----GTTATAT-AT---CAC-AA------T--ATGAGCTTCAATA----A-CCatattgtgatatataacatgtcgtttttgtaataatgcacacctcgccagctcgtgcttttta
gi|7 : ttgaaagtttgataaatgctggatgatttgccacacatttcctgtagatgccaatattgatgaaattccgtcttctttggagctacctccctttgagatgaaaaagggaatgccaatttagcacacttaaatgacgcctttggctactcatcaaccgaaaaggccCACCCGAAACATTCTCGGTATGAGAATTCAATACTGACAATACCGTAAC----------GACGTA---AAACCTCGAAAT-CTTAT-GCGGCGGTCCACCAAA-TCTGACAGTG-CTGGgtgcttttta
gi|8 : atgtataattatgtacctaagatttaatctacttttaaaaatgcataaattctagagagtgttagcgctaggtagtctgaaattttattgaatgctatctttgcattgcgaaaattgtgtgCACTCGAAACATTCCGAGTATGAGCGTTCACTATTAAC----------C----------GACATAAACA
gi|9 : atcgtacctttattatatagttaacaaatagtccgttataaaatctgcgtaaaatttagagagtgttagcattcaatatctaagaattcattgaaagctaactttccattgcgtaaattgtgtg-ATGAGTTAA----------C---------T-ATAAAA-ATG------------------------C------A------------CGA-------G-CTTGCGAGTGCA-TTTAG-GCAGTC--AACC-A----GT----GCCA-AT-AT--TCACCAAAACATGT--ACAAG-TTCAATA----A-CCCTTGTATTATA
gi|9 : ataaacttacgctaTGCA-CT-------------------------C------G------------CAA-------G-CTCG----TGCA-TTTTT-ATAGTT--AACT-C----AT----G--------------CCAA------T--ATAAG-TTCAACA----A-CCC-TATgccaatataagttcaacaaccctat
blockSeqs : TA CG A CTAACCGTAAC A T A G A A G A TGCCACTTT ATAA AAT A C . A C A T A ACATGT CC AAATACTGT A T C A T C A G C . TGG T A AATA A T C CCTCC A AA C C TTAAA A GT AA GT A G CCGAAAAGGCC G A G TAAATTGGTGAATATTGGCAATAATCG TTTATTT TC C CGAG T CA A TG CACGAG ACTG T C AT AACATG GA C AGTT T T
blockSeqs : TG AA A AATACCGTAAC A . . . . . G . TGTACT GTGA AAT G T . T . A C . G T AATACTGT . . C A . . . . C . . . T . A A . . . . . . . C CC . T G . TAAAAG . . . TAAATTAGTTAAAT . T T CGAG . A T . ACA . . . . . . . . . T
blockSeqs : TG CG G G . . . . . . . . . TCGT ACT T T . T . T T . G T . . . C A . . . . C . . . T . T T . . . . . . . A CC . T A . A . . . TATTGTGG . C T C . C C . AG . . . . . . . . . .
blockSeqs : A C . . . . ATA . T . . G . C . G T . . . T C . . . . G . . . T . A A . . . . . . A C . C C . T . . . GCA . T T . . A T . CG . . . . . . . . . .
blockSeqs : . T C . . . T G . . . . C . . . T . T A . . . . . C A . . G . C . . . GCA . C G . . A C . AG . . . . . . . . . .
blockSeqs : . T C . . . T C . . . . G . . . T . A A . . . . . . C . . . TG . T T . . A C . TG . . . . . . . . . .
blockSeqs : A . . . T C . . . . G . . . T . T . . . . . . CG . T T . . A C . CG . . . . . . . . . .
blockSeqs : . . . . G A . . . . A . . . . . . . CG . C C . . A G . CG . . . . . . . . . .
blockSeqs : . G . . . . . . CA . G T . . A C . CG . . . . . . . . . .
blockSeqs : . CG . C C . . G A . AG . . . . . . . . .
blockSeqs : . GG . C . . . A T . CA . . . . . . . .
blockSeqs : . CG . . . . . . T . C . . . . . . .
blockSeqs : . . . . C . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : C******************** NCGA******** AAT* **** **
originalCons : CACCCGAAACATTCCGAGTATGAGCGTTCAATATTAAC----------C----------GACGTAAACAAAGC-CAAAAT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTAT-CATT-GC-ACT--AAAAACAAATA--GT------A-TTTACTTAAACAAANT-GTTTTACTG----TACATANATTATGATG-TCCCCATTCACAAAATCAGTTTGCTTCATGCATCAATGACGGG-TT-----TAATATTGAAC-AGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCT-TANA--T---GCCAA-TATTGATG----AATTCTCGTCTATTTNGGAG-TA-----TTTTGAG-TG--AAAGGGAATG-CAATTTAACA-AC-----TGANTNCTTTA--GCTAN-ATGA-TTAA----------C-----GG-TT-ATTGAA-CT-------------------------C------G------------CAA-------G-CTCG----TGCA-TTTTT-ACAGCC--AACT-C----GT----GCCA-AT-AT--TCACCAA------T--ATAAG-TTCAATA----A-CCC-TATATTATA
finalCons : CACCCGAAACATTCCGAGTATGAGCGTTCAATATTAACC--------------------GACGTAAACAAAGC-CAAAAT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTAT-CATT-GC-ACT--AAAAACAAATANCGA--------TTTACTTAAACAAAAT-GTTTTACTG----TACATANATTATGATG-TCCCCATTCACAAAATCAGTTTGCTTCATGCATCAATGACGGG-TT-----TAATATTGAAC-AGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCT-TANA--T---GCCAA-TATTGATG----AATTCTCGTCTATTTNGGAG-TA-----TTTTGAG-TG--AAAGGGAATG-CAATTTAACA-AC-----TGANTNCTTTA--GCTAN-ATGA-TTAA----------C-----GG-TT-ATTGAA-CT-------------------------C------G------------CAA-------G-CTCG----TGCA-TTTTT-ACAGCC--AACT-C----GT----GCCA-AT-AT--TCACCAA------T--ATAAG-TTCAATA----A-CCC-TATATTATA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGAATACATTACATCTATTATATAGTTAATAAATATTCTATCATAAAATCTGCGTAAGATCTAGAGAATATTAACTCTCAATATCTTGATAATTTATTGAATGCTAACTTTGCATTGCGTAAATTGTGTGCGTCCG
Unaligned ( gi|12 ): AATAAAATAAATTTATCGTATAGCTAACAAATGCATGTGGTCTATTATAAAATCTGCGTAAAACCTAAAGAATGTTAGCGTTCAATATCCTAAGAATTTATTGATCGCTAACTTTACATTGCGTAAATTGTCAC
Unaligned ( gi|20 ): ATCTGGCTCAGATGGACTATTAGCGTTCAATATCCTGAGAATGGTATTGATCGTTAACTTTGCAATTGCGTAAGTATGAGCGTTCA
Alignments
lowQualScore : 777777777777777777777 1 1 111 1111111 333333333 111 1111 111111 333333333 11111 1 11111 11 3333333333333333 555555555555555555555555555555555555555555555 1111111 1111
lowQualScore : 33 22 3 000000000000000000000 0 5 0 8 8 8 8 2 111 3 4444444 0 777777777 0 444 1 3 7777 1 8 1 1 5 555555 88 333333333 4 4 1 1 4 4 4 4 1 55 777 4 3 8888 1 3 5 22222 5 77 0 8 66666 1 88 99 33 5 5 0 9999999999999999 5 4 2 000000000000000000000000000000000000000000000 0000000 33 5 6666 0 3 66 2 33 6666666 5555 2 2 33 888888 44 3 7777 3 8
lowQualScore : .. .. . ..................... . . . . . . . . ... . ....... . ......... . ... . . .... . . . . . ...... .. ......... . . . . . . . . . .. ... . . .... . . . ..... . .. . . ..... . .. .. .. . . . ................ . . . ............................................. ....... .. . .... . . .. . .. ....... .... . . .. ...... .. . .... . .
lowQualScore : 55 88 8 000000000000000000000 8 5 0 0 0 0 0 5 000 2 2222222 8 666666666 8 888 0 8 0000 0 0 0 2 7 666666 11 999999999 4 4 7 0 4 4 4 0 0 55 000 0 4 5555 0 6 0 55555 7 99 0 0 77777 0 55 22 22 3 7 6 7777777777777777 0 4 9 888888888888888888888888888888888888888888888 0000000 88 1 2222 2 1 11 6 77 5555555 7777 7 7 77 222222 22 1 1111 6 0
consensus : CACCCGAAACATTCCGAGTATGAGCGTTCAATATTAAC----------C----------GACGTAAACAAAGC-CAAAAT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTA-T-CATTGC-ACT--AAAAACAAATA-----NTGATTTACTTAAACAA-ANTGTTTTACTG----TACATANATTATGATG-TCCCCATTCACAAAATCAGTTTGCTTCATGCATCAATGACGGG-TT-----TAATATTGAAC-AGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCT-TANA--T---GCCAA-TATTGATG----AATTCTCGTCTATTTNGGAG-TA-----TTTTGAG-TG--AAAGGGAATG-CAATTTAACA-AC-----TGANTNCTTTA--GCTAN-ATGA-TTAA----------C-----GG-TT-ATTGAA-CT-------------------------C------G------------CAA-------G-CTCG----TGCA-TTTTT-ACAGCC--AACT-C----GT----GCCA-AT-AT--TCACCAA------T--ATAAG-TTCAATA----A-CCC-TATATTATA
Reference ( family-1252 ) : CACCCGAAACATTCCGAGTATGAGCGTTCAATATTAAC----------C----------GACGTAAACAAAGC-CAAAAT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTA-T-CATTGC-ACT--AAAAACAAATA-----NCGATTTACTTAAACAA-AATGTTTTACTG----TACATANATTATGATG-TCCCCATTCACAAAATCAGTTTGCTTCATGCATCAATGACGGG-TT-----TAATATTGAAC-AGT---------T-AGG-AAATGCACGNTGA-TATTGC-ACAC-TTTCACCT-TANA--T---GCCAA-TATTGATG----AATTCTCGTCTATTTNGGAG-TA-----TTTTGAG-TG--AAAGGGAATG-CAATTTAACA-AC-----TGANTNCTTTA--GCTAN-ATGA-TTAA----------C-----GG-TT-ATTGAA-CT-------------------------C------G------------CAA-------G-CTCG----TGCA-TTTTT-ACAGCC--AACT-C----GT----GCCA-AT-AT--TCACCAA------T--ATAAG-TTCAATA----A-CCC-TATATTATA
gi|1 : CGCCCGAAACATTCCGAGTA--------CAATATT------------------------GACGTAAACAA-GC-CAAAAT-GACAG-ACGATGATCCTCCGAA-TCTAACAGAT-TCGGTATTTGAGTATT-TTTTGC-ACT--AAGAACAAATATTTATTTTATTTACTTAAACAATTTTGTTTTGCTACAACTACATAAATTATGATT-TCCCCATTCACAAAATCAGTTTGCTATATGCATCAATGACGGA-CT-----TAATATTGAAC-AGT---------T-AGG-AAATGCATGCTGA-TATTGC-ATAC-TTTCACAT-TACAATT---GCCAA-TATTGATT----AATTCTCGTCTATTTTGGAG-TA-----TTTTGAG-TT--AAAAGGAATG-CAATTGAAAA-AT-----TGACTACTTTG--GCTAA-ATGA-TTAA----------T-----GG-TT-ATTGAA-CT-------------------------T------A------------CAA-------G-CTCG----TGCA-TTTTT-ACAGCC--AATT-C----GT----GTAA-AT-AT--TCACCAA------T--ACAAG-TTCAATA----A-CCC-TATACCATA
gi|10 : AT-GGCAG-ACGACGGTCCTCCGAA-TCTGACAGAG-CCGGTATTTGAGTA-TATATTGT-ACT--AAAAACAAATA-----ATAATTTACTTAAACAA-AATGTATCACTG----TACATAAATTATGATG-TTCCCATTCACAAAATCAGTTTG
gi|13 : ATGACGG--TT-----GAATATTGAAT-AGTAATACTGT-T-AAG-AAATGCACGATGA-TAATGA-ACAC-TTTCACC--TACA--T---GTCAA-CA-TGAT-----AATTCTTGTCTATTTAGT-G-TA------TTTGAG-TG--AGAGGG
gi|14 : -TT-CTTGAA-CT-------------------------T------G------------CGA-------G----G-----GAA-TTTTT------T--GACT-CACGAGT----GCCA-AT-AT--TCACCGA------TGAATAAG-CTCATCA----ATTCC-TTTGTTATAtttattcgtaaagtaa
gi|14 : atactttagatacatgta-CT-------------------------C------G------------CAA-------G-TTCA----AGAA-TTTTT--CAAACTGGACT-C-----T----GCCA-AT-AT--TCACCAtttttcaaactggactctgccaatattcacca
gi|15 : atactttagatacatgtatataacaaaggaattgatgagcttattcatcggtgaatattggcactcgtgagtcaaaaaattccTAAGA-AC-----TAAAT-CTTAAAAGCTA--ATAA-TAAA----------A-----GGGTT-ATTGAA-CT-------------------------T------AAATTAGTTAAATTAATTTATTTG-CTTG----TGCA-TTTTG-ACAGTC--AACG-A----GT----GCTG-ATCAT--TCACCTA------T--ATAAC-TTCAAT
gi|16 : -----TGACTA--TTA--GCCAGTACGA-TT------------T-----GG-TT-GGGAAA-TTG------------------------C------A------------CAA-------G-TTTGCGAGTGCA-TTTTT--------------------------CCA-AT-AT--TCACTAA------T--ATAAG-TTTAACA----A-CCC-ta
gi|16 : taaaTGCA-CT-------------------------C------G------------CAA-------A-CTTG----TGCA-ATTTC-CCAACC--AAAT-C----GTACTGGCTA-AT-AG--TCACC-A------T--ATAAG-TTCAAGT----A-CCC-TATccatataagttcaagtaccctat
gi|17 : taaaagggttgttaaacttatattagtgaatattggaaaaaATGACGGG-TT-----GAATATTGAAT-AGT---------T-AAG-AAATGCACGATGA-TAATGC-ACAC-TTTAACCT-TACA--T---GTCAA-CAAT-ATG----AATTCTCGTCTA-TTAGGTG-TA-----TTCTG
gi|18 : T-ATTGG-----------------------------C------A------------CAG-------G-TTGGC---TGTA-TTTTG-A--GTC--AACG-A----GT----GTCA-AT-AT--TTACCAC------T--AGAAG-TTCAATA----A-CCCTTTTATTA
gi|18 : T-ACAGCC--AACC-T----GT----GCCA-AT-AT--TTACCAA------T--ATAAG-TTCAATA----tttaccaatataagttcaata
gi|19 : taataaaagggttattgaacttctagtggtaaatattgacactcgttgactcaaaaGG-TT-----GAATATTGAAT-AGTAAATACTGTT-AAG-AAATGCACGATGA-TAATGA-ACAC-TTTCACCT-TACA--T---GTCAA-CA-TGATG----AATTCTTGTCTATTT
gi|2 : CACCTAAAATATTCCGAGTATAAGCGTTCAATATTAAC----------CTAACCGTAACGACGTAAACAA-GC-CAAAAT-GGCAG-ACGACAGTCCTCCGAA-TCTGACAGAG-CAGGTGTTTGA-TA-T-CAT----------------AATA---------TTTACTTAAACAA-AATGTGTTATTG----TACATATTTTATTATG-TCCCTATTCACAAAATTAGTTTGCTTCATGCATCAATGACGGG-TT-----TGATATTGAAC-AAT---------T-AAA-AGATGCATGCTGA-TTTTGC-ACAC-TTTCACCA-AAGA--T---GCCAA-TATTGATGAATAAATTGTCGTCTATTTTGGAG-TA-----TTTTGAG-TA--AAAAGGAATa
gi|21 : aatatcataatcattatatagctaacaattagtagaaaatctgcataaaatctagagaatgtttttgtacattaactttgcagtggtgtaaattgtgtgA-CT-------------------------C------G------------CAA-------G-TTTG----TA-A-TTTTTCAAATCC--AAAT-C-----T----GCTA-AT-AG--GCACCAA------
gi|22 : ttggtgaataatggtactcattcgttgttatatccACCT-TACA--T---GTCAA-CAT-GATT----AATTCTTGTCTATTTAGGTG-TA-----TTCTGAG-TG--AGAGGG
gi|23 : TTTC-ACAGCC--AGCT-C----GT----GCCA-AT-ATATTTACCAA------T--ATAAG-TTCAATA----A-CCT-TATAtttattcgtaaagata
gi|3 : ATA-----GTGATTTACTTAAAGAA-ACTGTTT-ACTG----TTCATATATTATAATG-TCCGCATTCACAAAATCTGTTTGTTCCATGGATCAATGACGGG-TT-----TAATATTGGACCATT---------T-ATG-AAATACATGGTGA-TATTGC-ACAC-TTTCACAT-TAGA--T---GCCAA-TATTGATG----AATTCTCGTCCATGTTAAAA-CA-----TTTCGTG-TG--AAAAGGAACA-TAATTTAACA-AC-----TAGATGTTTTA--GCTAT-ATAC-TAAA----------C-----GG-GTAATTGAA-TT-------------------------TATTGTGG------------TAA-------ATCTTG----T-CA-TTTTG-ACAGGC--AGCT-C----GT----TCTA-AT-AT--TCATCAA------T--ATCAG-TTCAATA----A-CCC-c
gi|4 : acctgaaagaattgccggctcatttgAAC----------G----------GACGTAAACAAAGC-CAAAATAGGCAGGACGACGGGCCTCCAAAATCTGACAGAAACCGGTATTTGAGAT-T-CATTGCCACTTTAAAAACAAATA-----TCGTTTTAC------------GTTTTACTG----TACATGGATTGTGATGCTCCCCATTCACAAAATTCGTTTGCTTCTTGCATCAATGACGGGATTACATGTAATATTGAAC-AAT---------TAAGA-AAATGCATGCTGATTATT-C-ACAC-TTCCACCT-TAGA--TTGGGCCAATTATTGATG----AATTCTTGACTA
gi|5 : TTGAAA-AGT---------T-GGG-AAATGCATGCTGA-TATTGC-ACAC-TTTCACCT-TAAA--T---GCCAA-TATTGATG----AATTCTTGTCTATCTAGTAG-TA-----TTTTGAG-TG--AAAAGGGATA-TAATTTAACA-GC-----TAAACCCTTTA--GCTAT-AT-A-TTAA----------TAAAAGGG-GT-ATTGAA-CTTAAATTGGTGAATATTGGCAATAATC------G------------CAA-------G-CTCG----TGTATTTTTT-ACAACC--AACT-C----GT----GCCA-AT-TT--TCACCAA------T--ATAAA-TTCAATAAGTTA-CCC-TATATTAat
gi|6 : caggTTGAA--AGT---------T-TGATAAATGCTGGATGA-T-TTGCCACACATTTC--CTGTAGA--T---GCCAA-TATTGATG----AAATTCCGTCTTCTTTGGAGCTACCTCCCTTTGAGATGAAAAAGGGAATGCCAATTTAGCACACTTAAATGACGCCTTTG--GCTAC--TCA-TCAACCGAAAAGGCC-----GG-TT-ATTGAAGCT-------------------------C------
gi|6 : GAG-CT-------------------------G------G------------CGA-------G-GT-G----TGCA-TTATT-ACAAA---AACGAC----AT----GTTATAT-AT---CAC-AA------T--ATGAGCTTCAATA----A-CCatattgtgatatataacatgtcgtttttgtaataatgcacacctcgccagctcgtgcttttta
gi|7 : ttgaaagtttgataaatgctggatgatttgccacacatttcctgtagatgccaatattgatgaaattccgtcttctttggagctacctccctttgagatgaaaaagggaatgccaatttagcacacttaaatgacgcctttggctactcatcaaccgaaaaggccCACCCGAAACATTCTCGGTATGAGAATTCAATACTGACAATACCGTAAC----------GACGTA---AAACCTCGAAAT-CTTAT-GCGGCGGTCCACCAAA-TCTGACAGTG-CTGGgtgcttttta
gi|8 : atgtataattatgtacctaagatttaatctacttttaaaaatgcataaattctagagagtgttagcgctaggtagtctgaaattttattgaatgctatctttgcattgcgaaaattgtgtgCACTCGAAACATTCCGAGTATGAGCGTTCACTATTAAC----------C----------GACATAAACA
gi|9 : atcgtacctttattatatagttaacaaatagtccgttataaaatctgcgtaaaatttagagagtgttagcattcaatatctaagaattcattgaaagctaactttccattgcgtaaattgtgtg-ATGAGTTAA----------C---------T-ATAAAA-ATG------------------------C------A------------CGA-------G-CTTGCGAGTGCA-TTTAG-GCAGTC--AACC-A----GT----GCCA-AT-AT--TCACCAAAACATGT--ACAAG-TTCAATA----A-CCCTTGTATTATA
gi|9 : ataaacttacgctaTGCA-CT-------------------------C------G------------CAA-------G-CTCG----TGCA-TTTTT-ATAGTT--AACT-C----AT----G--------------CCAA------T--ATAAG-TTCAACA----A-CCC-TATgccaatataagttcaacaaccctat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGAATACATTACATCTATTATATAGTTAATAAATATTCTATCATAAAATCTGCGTAAGATCTAGAGAATATTAACTCTCAATATCTTGATAATTTATTGAATGCTAACTTTGCATTGCGTAAATTGTGTGCGTCCG
Unaligned ( gi|12 ): AATAAAATAAATTTATCGTATAGCTAACAAATGCATGTGGTCTATTATAAAATCTGCGTAAAACCTAAAGAATGTTAGCGTTCAATATCCTAAGAATTTATTGATCGCTAACTTTACATTGCGTAAATTGTCAC
Unaligned ( gi|20 ): ATCTGGCTCAGATGGACTATTAGCGTTCAATATCCTGAGAATGGTATTGATCGTTAACTTTGCAATTGCGTAAGTATGAGCGTTCA