lowQualScore : 111111111111111111111111111 1111111111111111111111111111111
lowQualScore : 11111 1 11111 1111111 222222222 11 2222 44444444444444444444 1 111 1 11 55555555555555555555 111 1111111 222 11 11 33333 111 11 11111 11 11 33333333333 1 22222 1 222222 111 222222 2222222222 22222 11111 11 11 222 444444444444444444444444444 2222 11 4444444444444444 1111 3333333333 44444444444444444444 1111 1 1111111 2222 4444444444444444444444444444444444 1 1111 111 11 222 1 1111 2222 222222 1 111 11111 111 1111111 4444444444444444444444444444444444444444444 1 2222 1111111111111 11 3 11 11 3 111 333333333 22 3 111 1 111 2222 1 22 2222 11 1111111111111111111111111111111 1 22222222 1 777777777777777777777777777 222222222222 1 33333333 1 77777777777 1 1 1 1 222 11 11 1 1 22 11 55555555555555555555555555 1 1 1 1111 22222222222 1111 333 111 333333 111 2222 222 1 3333333333333333333333333333333333333333333333333 1 11 11 1 22222 1 111 11 3333 1111 1 1 1 222 22 1 111 3 33333 1 1 22222
lowQualScore : 22222 5 66 4 7 4 4 4 66666 777 4 0000000 444444444 3 4 4 9999 55 1 11 4 4 2222 3 88 88888888888888888888 0 333 5 5 5 5 11 22 11 88888888888888888888 5 5 5 5 5 000 77 6 7777777 99 99 222 55 6 6 55 00000 6 111 99 6 55 99 6 88888 3 6 88 44 99 6 33333333333 3 22222 55 6 1 3 999999 99 111 3 6 6 6 6 6 6 000000 99 0000000000 6 999 11111 6 55555 66 88 8 11 000 8 8 444444444444444444444444444 8 3333 6 6 55 1 5 1 1111111111111111 2222 1 0 2222222222 77 4 5 5 22222222222222222222 5 8888 5 1 3 9999999 0000 4444444444444444444444444444444444 3 2222 6 111 8 11 8 8 88 88 000 3 1 5 8 6666 9999 333333 6 444 8 99999 222 6 6 6 6 6 6 8888888 0000000000000000000000000000000000000000000 6 1 3 6 1 5 6 0 8 1 5 0000 8888888888888 11 1 2 8 8 0 11 11 0 2 0 777 777777777 3 55 3 777 3 666 8888 3 88 7777 7 88 2222222222222222222222222222222 3 55555555 0 000000000000000000000000000 3 888888888888 0 33333333 0 4 6 55555555555 3 3 2 0 0 000 33 33 0 0 77 33 44444444444444444444444444 0 0 0 9999 88888888888 2222 111 2 777 111111 777 7 2222 777 3 8888888888888888888888888888888888888888888888888 3 88 88 3 33333 0 666 33 5555 4444 0 0 0 2 3 333 33 5 666 6 0 77777 0 0 44444 6
lowQualScore : ..... . .. . . . . . ..... ... . ....... ......... . . . .... .. . .. . . .... . .. .................... . ... . . . . .. .. .. .................... . . . . . ... .. . ....... .. .. ... .. . . .. ..... . ... .. . .. .. . ..... . . .. .. .. . ........... . ..... .. . . . ...... .. ... . . . . . . . ...... .. .......... . ... ..... . ..... .. .. . .. ... . . ........................... . .... . . .. . . . ................ .... . . .......... .. . . . .................... . .... . . . ....... .... .................................. . .... . ... . .. . . .. .. ... . . . . .... .... ...... . ... . ..... ... . . . . . . ....... ........................................... . . . . . . . . . . . .... ............. .. . . . . . .. .. . . . ... ......... . .. . ... . ... .... . .. .... . .. ............................... . ........ . ........................... . ............ . ........ . . . ........... . . . . . ... .. .. . . .. .. .......................... . . . .... ........... .... ... . ... ...... ... . .... ... . ................................................. . .. .. . ..... . ... .. .... .... . . . . . ... .. . ... . . ..... . . ..... .
lowQualScore : 55555 0 11 4 8 4 4 4 33333 000 0 5555555 555555555 1 0 0 2222 55 9 00 0 0 0000 6 88 22222222222222222222 0 888 0 0 0 0 99 66 22 33333333333333333333 7 7 7 7 7 000 99 7 5555555 22 22 555 88 7 7 88 00000 7 555 22 7 88 22 7 55555 2 7 33 33 22 7 88888888888 3 33333 77 7 7 3 222222 22 777 5 7 7 7 7 7 7 000000 22 5555555555 7 000 88888 7 33333 88 88 0 00 000 0 0 666666666666666666666666666 0 4444 7 7 88 4 7 3 4444444444444444 1111 7 1 3333333333 99 0 7 7 99999999999999999999 7 1111 7 4 9 0000000 8888 0000000000000000000000000000000000 3 7777 7 777 0 00 0 0 88 88 666 6 4 6 0 0000 0000 000000 0 000 0 66666 888 7 7 7 7 7 7 7777777 2222222222222222222222222222222222222222222 7 7 3 7 7 2 7 8 0 0 0 8888 9999999999999 00 4 0 0 0 8 00 00 8 0 8 555 222222222 2 00 8 555 3 777 3333 3 77 0000 3 33 3333333333333333333333333333333 3 33333333 0 888888888888888888888888888 2 222222222222 0 00000000 0 7 7 00000000000 3 3 5 0 0 888 22 88 0 0 55 88 00000000000000000000000000 0 0 0 8888 00000000000 2222 888 5 555 777777 777 3 7777 000 3 3333333333333333333333333333333333333333333333333 3 33 33 3 11111 0 222 88 8888 8888 0 0 0 5 5 000 88 5 222 5 0 55555 0 0 88888 7
consensus : TCTTTA-----G-A--TTAAA-AAAT-A-ATG-GN-T--GGA---TG-T----C--AA----A----CATGTAAA-AT-G--AATC--GGGG-NAT-ACGT-C--A-GGG-TGTCCCATTTC----TTGCGAT--GA-TA--TTTTTG-TT---G-TA-A-TTGAAA--TTCTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAAAGATA-A-AGAT--G-TCAAAG-ATGA--TAT-----AAA-AT-TAGTCC--AA-C--AC--G-C-A---GATGATTTGTAC-TTTA--CCTTTGAAAG-ATG-AA-CTATCAT-TT-----AAAACTCG-CTC-TC--AAAGAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTC-T----AAAA--C---A-GA-A-TG-CATAC-TTCTT---G-G-TGG--TA-TGAAACA-CAAAAACATTAACA-C-TTTT--GATAN-TA-A-AAATT-------------AN--------T---ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GAATTA-TGTTTACACAAAAAT--AACTGGA-TA-AG----AT-G-CA--T------ATCA-G-A--TA-TGGAAA-AACTTT-----TCGAATCCTG----GAAAACTAGG-A-------A-T-CTT-AC--T-CT--T-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATATN-TAGCGTCTATTTTAAATTTA-CC--G-CGACACAAAAGA------AATAAAACA---CATG-CGAAAAATTATTT--TTTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT---GGT-ANTAGT----A-T-GT-TG-ATA-TTG-AATNT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACC-TG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTG--G--TGTGAAT-CTTTA-CTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC--AAAT-TATACCATTGT--GCA----A-TAAAT-------------ACC--GAGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAAG---TTC---AT-CAA-G-T-C----AAAATAT--TT--NC-AA-CTG-AAG-A---A--TTT-TTATCGCAATCCCTGT------GGC--AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GGC-ATAAAAAG--TGG-GTTTTTTT---T----TATG----TTAAA-GAT-ATTGTT-GAT---GAAAATGGCCTTTG--A-A-ATC-AA-CA-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-A--AGC-G-AAATTG-GTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAA--AATN--AA-A--TA-TG-TCAA-CGAAAGCCACCATNGGA--TATA--TTTTTACAGGAAACNA-CTCTGTGGAAAC--CCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
Reference ( gi|5 ) : TCTTTA-----G-A--TTAAA-AA-T-A-ATG-GG-T--GGA---TG-T----C--AA----A----CATGTAAA-AT-G--AATC--GAGG-TAT-ACGT-C--A-GGG-TGTCATATTTC----TTTCGAT--GA-T---TTTTTG-TT---G-TA-A-TTG-AA--TTTTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAAAGATATA-AGAT--G-TCAAAG-ATGA--TAT-----AAA-AT-TAGTCC--AA-C--AC--G-C-A---GATGATTTGTAC-TTTA--CCTTTGAAAG-ATG-AA-CTATCAT-TT-----AAAACTCG-CTC-TC--AAAGAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTC-T----AAAA--C---A-GA-A-TG-CATAC-TTCTT---G-G-TGG--TA-TGAAACA-CAAAAACATTAACA-C-TTTT--GATAA-TA-A-AAATT-------------G-------------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GAATTA-TATTTACATAAAAAT--AACTGGA-TA-AG----A--G-CA--T------ATCA-G-A--TA-TGGAAA-AATTGT-----TCGAATCCTG----GAAAACTAG--A-------A-T-CTT-AC--T-CT--C-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATATT-TAGCATCTATTTTAAATTTA-CC--A-CG--A-AAAAGA------AAT-AAACA---CATG-CGAAAAATTATTT--TTTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT---GAT-ATTAGT----A-T-GT-TG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAA-C-TG-TAA--AGGTA--AATTGAAGTATTTCCTT-ATTCTTTGTGTAG---ACAAAGTTG--GGTTGTGAAT-CTTTACCTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAAT-TA-ACCATTGT--GCA----A-TAAA--------------ACC--GAGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAA-----TTC---AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCACAATCCCTGT------G----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GG--ATAAAAAG--TGG-GTTTTTTT---T----TATA----TTAAA-GAT-ATTGTT-GAT---AAAAATGGC--TTG--A-A-ATC-AA-CA-CAAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-A--AGC-GAAAATTG-GTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAA--AATG--AA-A--TA-TG-TCAA-CGAAAGCCACCATAGGA--TATA--TTTTTACAAGAAACAA-CTCTGT-GAAAC--C--CTGA-ATACAA-G--TG-CAGTTTTTTCTATGGTA
gi|4 : TTTTTA-----GGA--TTAAA-AA-T-A-ATG-GT-G--GGATTCTG-T----C--AA----A----C-T-TAAATAT-G---ATC--G-GG-AATAACGT-C--A-GGG--GTTCCATTTC-----TGCGATGCGA-C---TTTTGT-TT---G-TA-A-TGA-AA--TCCATGCTATTAAG-TTA-----GA---------GTG-AATAA-AAAGAA-T-A-A----G--GAT-T-------AGA--TT--TCAAAGAGATAGAGATTGG-TCAAAG-ATGAGGTAT-----GAA-AA-TAGTTC--AG-C--AC--G-CAA---GAT-ATCTGTAT-CTTAATCACTTGAAA--AT---A-GTATCAT-TG-----ATAA-TTG-CTCTTC--GAAGAAATACAAA-ATCTTTC--AAACAT--AA---GGTTT-C-T-GTA-T-G-AAAC-T-AATTTTTC------AAAA--C---G-GACATTG-CATAC-T--CT---G-G-TGA--CA-TG-AACATCAAGAA-ACTAAT--C-CTTT--GAT-A-TA-A-AAATTAGAGAGCTATGTGA-------------ATCAAA-AAC--TCT-C-G--GTATTT-------------------------A----CAATTA--ACT---ACAAAAAT--AATTGCATTA-AG----AT-G-TAT-T------ATCA-T-ATTTA-TGGAAA-AACTTT-----TCGA
gi|15 : ggagcctgtacgaatgaattaaaacacgcggatgtataacgttcggttttgggatcaaaataatgggacggataacatgatactttggataacgtatgcgttttaccagaaaattaatatagtccaccaaatgtaggaagactccggaaattacaggatgtgtctcactatagggagtattagatggtaaaaaaggaatatgatcgtatcatatattgacacctaatgattctttccacatcagagagtgggaagaagtcgttgtgctttgttcacagaactgtaataagagtcctgggttagacggtctcccctctgaagttcttatcgagacattttgggagaaaactcaagccataactgtttttttgcttctattgataagtgcatttgaagaatgaaatgtttaaacatttttacaataagattagcctgtttttatcttactatctagatagagaggtagagtgaatatccagagagtccggtcgtgaatggaaattaagagatagacctgcattaaatcttactctaaaatcacagactgattaaaaatcatatggctttaccactttgggcgaagaggacaaaaaatagaaagttcatagcaaatgatattcactgtatagatttatatggtaaatcaatcaagaatatagtgggcgagtatctcttgggaacacttagcacacaaaacagaatccattttggctcacttcgtcacagaggagcgctaatgttggatctctaatgaaataagttttatgtgatataatatagatgcatatctaactttagcgtaaagaggtggttgtgagtaaatgataaatatagctaatatgtaaagaactaTTTTTA-----A-A--TTAAA-AAAT-A-ATG-GG-T--GGA---TG-T----C--AA----AAA--CATGTAAA-AT-G--AGTC--GGGG-AAT-ACGT-C--AGGGG-TGTCCCATTTC-----TGCGAT--GA-TA--TTTTTGTTT---G-TA-A-TTGAAA--TTCTAGCTATTCAGATTA-----GA----------TGAAATAA-AGA-AA-T-A-AG---G--G
gi|1 : ggaattttatgctcaaagttctaaaatcatataatttggtgataattttataaagtggataaatatactatataaagaacctaCTTGA-----G-ACATTAAAGAA-T-A-ATG-GG-TCCGAG---CC-TTCAAC--AA----A----CATGTAAA-CT-G--AATC--GAGG-AAT-ACGT-CCAG-GGG-TGTCCTATTTC-----TTCGAT--GA-TA--TTTTTT-TT---GTTA-A-TTGAAA--TTTTAGCCATTCAGATTA-----CAGCTAACATGCT--AATAA-AGA-AATT-ACAGCGCG--GAT-T----TA-ACATCTT--CAAAAGATCAA-AGAT--G-TCAAAG-A-GA--TAT-----AAA-AT---GTCC--AA-CA-AC--GCC-A---GATGATTGGTAC-TTTA--CCTTTGAAAGCATG-AA-CAATCATATTTTTTAAAAACTCG-CTC-GC--AA--AAA-ATCAACATCTTTCTAG---GT--GAACCGGTAT-CTTGGTATT-G-AAAC-TAAATGTTTC-T----AAAAACC---A-G--A-TG-C-TAC-TTCTT---GCGCTGG--TACTGAAACA-CAAAAACATTAACA-C-TGTTCAGATAT-AA-A-AAATT-------------AAATACATCTTAGTATCAAA-AC---TCT-C-GGCGTGTTTTTAATTGCCTCCATGC-AT-A--AAA----GAATTA-TGTTTA-ACAAAAAT--AACTGGA-TA-AC----AT-G-CA--T------ATCA-GCAACTA-TGGAAA-AACTTT-----TCGAATCCTGCCGCAAAAACTAGA-A-------A-T-CTTCAC--T-CT--CT----TT-GGAAAAG---CTTG-TA---TCGTGAACACTCCTTGCCCGATAATCTAAA-CTCTGCTATATCGTAGCATCTACTTTAAATTTACCC--G-CGACA-AAAAGA------AAT-AAACACAGCATG-CGCAAAAATAT----------------TGCGA-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-CGCGAGAAACAATAAAA-AA--CA---AGCGTCGGGCTAATTAGT----ATT-GA-TG-ATATTTGCAATAT-AAACCATAAGACAATCAAAGCCTTCTTCTTGGAGACTGTA---GCAATAAAA--TACTAACC-TGCTAA--AGGCGACAATTGAAGTATTTCCTTGATTCTTTG-ATAAGACACACAATTGCCGCGTG-GAATACTTTA-CTTATCTTACTAA---TATAAATG-AATT-GCAA----GTCTATC-CAAATATA-ACCA-TGT--GCA----ATTAAATTACCCTACTGTTTACC--AAGA-TATATCTACTTTCCTTTAATGACATGTAAA-----ATCTCAAT-CAA-GCC-C----AAAATATTATT--TCAAA-CTGCAAGCA---A--TTT-TTATCTCAACCCCTGTGGCTGCG----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGA-CAATTTGCTTTA-CA--GA-CT-GGCAGTTAAAAA--TGG-----TTTT---T----TATATGGCTTAAA-GATCATTGTT-GAT---GAAAATGGCCTTTG--A-ACATCAAA-CA-C-AAT-GTTCTGAAT-GCTTCTTAACATTTTACCTTTGCA--AGC-G-AAATTG-GTTATGTGTGAA-TAT-AATATGCATGAAATACGCTGTTTAAGAAATGTTAATTTGCTA--CGCCGAAGTA--TTGAA-CATGCCTCTAA--AATT--AA-AATTA-TG-TCAA-CGAAAGCCACCATAGGA---ATAATTTTTTAC-AGAAATCA-CT-TGTCGAAAC--CCACTGACATACAACGGTTGCCAGTTTTTT-TATgata
gi|17 : aagttataggaatacaaatcgcaacgattattagtagcatatttacgatatattgcgaagaaaataatattgactggtattcttttttattcttgatttatcaaaaacgcattttgatcctgcttgagtggaatttactgcttcaaagcttcttaaatctatttaatctctcggaataatttataaacgtgggtaaatatactatatcaaagaacctatcCTTTATTCAGG-A--TGAAA-AA-T-A-ATG-GT-T--GGA---TA-T----C--AAGA--A----CCTGTAAA-AT-G--TCTC--GAGG-CAT-CCGT-CA-A-GGA-TGTCCCATTTC-----TGCTAT--AATT---TTTTTGTTT---G-TT-A-CTGAAA--TTCTCGCTATTCAGATAA-----Gcgcgctatatacgtttgattagaaaatttgcagacacctcatcaccaatcttttattgcaagaaatcatttcatcatacagcagtaaatcttcatggccttgataccacaaaaaatcagttaaaatgtcatgcacagaaaagctctgcctgaatcttaattcaaatattaataactttgctagcaaacagccatatcgtacttagcaaatgcgaatactcatattgaacaaaaaaaactgttctttgtactcttgtcaaaaagtgtagctaatgaaaataatgagcatct
gi|2 : tacacggaacTTTA-----G-A--TTAAA-AAAT-A-ATG-C--T--GGA---TG-T----C--AATAAGA----CATGTAAA-AT-GTGAATT--CGGG-AAT-ACGTTC--A-GGGGTGTCCCATTTC----TC---AT--GA-CA--TGTTTG-TTAGTG-TAGA-TTG-AAAATTCTAGCTATTTAGATTAAGATGGA---------C---AATAACAGA-AA-T-A-AG---GTGGAT-TGGTATG-ATT--TT--CAAA-GATA-G-AGAT--GATCAAACCATGA--TATCCCTTAAA-ATATAGTCCCTAG-CTTAC--G-C-ATGGGATGATTTGTACATTTAAACCTT-GAGAG-ATG-AGTCTATCAT-GT-----GTAACTTGACTCATCCGAAACGAA-ATCAATATCTTTCC-A---ATTAAA---GGT-T-C-TGGTA-T-GGAAACATAAATGTTTC-TTTTAAAAA--C-----GA-T-TGACATAC-TTCTT---TTG-TGA--CT-TGAAACA-TCAAAACTTTAACA-CTTTTT--GATAT-TA-AGAAATT-------------AATACATCTGTGT-ATCAAA-AAAGCTCT-CAG--GTG-TTTT-ATGA-----G----------AAATCCTGATTCATTATGTACA-AAAAA---AA-TGGA-TATAGATGTA--G-TG--TTATGGAATCA-GAA--TATTGGAAACAACTATATTAGTCGAAATCAGT---GAAAACTAG--AAAACTGCA-T-C-T-AC--T-CT--TTGTGGTT-GGAGTATTAAATTG-TAAATTCGTGAACAC
gi|10 : ttcatataattaaagccaatgaaaaatattcttctgtttttgtgacaattcttaatgacgaagtgatatacttgataaacatgtatgcgttttaccagaaattatatacgttctccataatgtagagactcgaaattacagatgcttacttattcaatattagatttggagacaaaaatctatatcatgactgataaatcttttcttagatctccactcacaatgaaagaaagtcgttgtgcctttgtttcaaaatcatgaaattagaggtaagaaaggtgccttgggttaacggtctatcccctcactgaacgttttagagacatttggcgagaaactcaaacaatacttttttttcttctgttgataagcatccttgataccgaagaaatccgtgtttaacatttacacaaagtattaagctgtttactaaatacataaaatggaagggtgaaaaatacctcccttggtacatgataactattaggtacccatagagtcttacaaacacaaggactaataaaatcattgggcttttacgttggcgaagaggctacaaaaaataatagattaagtttaatagcaatattatgatcagtcaagctatcagctaattaaaggcataatgcgtctattcaataggaataaaatcaagaaatctatcttatagtggcatattcttggttgtgaataaattgcgaaggaaatcgataactacttgatgggtgatttgcttcttatttcttcgatttcagagagaagcatttttaagatgatcatattgcatattggatattttaatgtttaatcataggagtctaaaagaatcatttttaatatttgggtgatgaaaaaatctttataggaagtaatggagtataaaaaactatacatatatagtaagatacctattctTTTA-----G-A--CTAAA-AAAT-A-ATA-AT-T--GGT---TG-T----CAAAA----A----CCTGTACA-AT-G--AGGC--GGGG-CAT-TCGT-CA-A-GGA-TGTC
gi|9 : atcagcctgcctatataaaagggcgatatattggtatgaatacatgtactagacttattgtcgatatttttgattgttgtgaaaataatgaagaggcaattttgcttttactcgattttcaaaaggcatttgatttcgtcgaatggtcttttatgataaaaacactcgagttctttaattttggacaagaattcattaaatggattcaaatcttatacaaaaatccagaaTTTA-----G-A--CTAAA-AA-T-A-ATATGC-T--G-----TG-T----CA-AA----A----CCTGTACA-AT-G--AGGC--GGGGCTAT-TCGT-C--ATGGA-TGTC
gi|3 : aaaagatcaacctgcctatataaaagccggatatattggtatagaatacattgtaatagctattgtcgatatttttgattgttgtgaaaataatgaaagagcaatttgcttttactcgattttcaaaggcatttgtttcgtcggaatgtgcttttatgataaaaacactcgatgttctttaatttttggacaagaattctcattcaaatagattcaaatcttatacaaaaaaatccagaaTTA-----G-A--TTAAA-AAAT-ATATG-GGCT--GGA---TGAT----C--AA----AAAAACATGTAAA-ATTG--AATC--GAGG-TAT-ACGT-C--A-GGG-TGTCATATTTC----GGTCGATTGAA-T---TTTGTT-TT---G-TA-AATTG-AAT-TTTTGGCCATTCA-ATTA-----AG---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAAAGATACA-AGAT--G-TCAAAG-ATGAT-TATA----AAA-AT-TAGTCC--AACC--ACCGG-C-AG--GATGA-TTGTAC-TTTA--CCTTTGAAAGCATGAAA-CTATCA--TT-----AAAACTCGCCTC-TCA-AAAGAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCTT----AAAA--C---AGGA-A-TG-CATACTTTCTTTCCG-G-TGGGTTA-TGAAACACCAAAAACATTAACA-C-TTTT--GATAATTA-A-AAATT-------------GT------------ATCAAA-AG---TCTCC-G--GTTGTTTT-ATTG-----GT-CAAT-A-TAAA----GAATTA-TTTTTACA-AAAAAT---ACTGGA-TA-AG----AT-G-CA--T------ATCA-G-A--TA-TGAAAACAACTTT-----TCGAATCCTG----GAAAACTAGGAA-------A-T-CTT-AC--T-CTTCT-----TT-GGAAAAT---GTTGTTA---TCGTGACCACT-CTTG--CGAT-ATCTAAA-C--TG----AAC-TAGC-TCTATTTTAA--TTA-CC--ACCG--ACAAAAGA------AAT-AAACA---CATGCCGAAAAATTA--T--TTTTCATTTCC-TATGGAAATAAGAAAAGCACAGACATTAAAAGAAATACCAATGGAT-C-----GAACAATA--A-AA--CA---AGTGG---GAT-AGTA-T----G-T-GT-TGCATACTTG-AATGT-AAACTAAAAG-CAATCAAAGC---CTTCTT-GA-----TA---G--ATAAAAATCACCAACC-TG-TAATCAGGTA--AATTGAAG-ATTTCCTT-ATTCTTGGTGTAG---ACAAAGTT---GGTTGTGAAT-CTTTTACTTATCTTACTTATATTACAAATG-AATT-G-AACGTGGC-TATCAAAAAT-CATACCATTGTTCGC-----A-TAAAT-------------ACCAAGAGA-TA--TTTA--TTTCTTTAATGA-ATGTTAA-----TTC---AT-CAA-G-TCC----AAAATAT--TG--CC-AATCTG-CAG-A---ACTTTT-TTATCACAAT-CCTGT------GGC--AACAATACAATTCATTATCACTATACAAGGAAAGA-CAATTTGCTTTA-CA--GA-CT-GG--ATAAAAAGGTTGGCGTTTTCTT---TTATCTATG----TTAAA-GAT-ATTGTT-GATAAAAAAAATGGCTTTTG--ACA-ATC-AA-CACCAAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-A--AGC-G-AAATTG-GTTA--TGTGAATTATAAAT----ATGAAATA--CTGTTTAAGAACT-----TATG-TAACCG--GAA-TA--T--GACCATG--TCTAA--AA-G--AACA--TATTG-TCAA-CGAAAGCCACCATAGGA--TATAC-TTTTTACAGAAAACAACCTCTGTGGAAACCAC--CTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|7 : --TTAAA-AG-TTG-ATG-GG----AAA--------------AA----A----CATGCTTG-AT-G----TCAAGAGG-AAT-AAGA-C--AAGGG-TGTCCAATTTCGGCGTT---AT--GA-TACATATTTG-TT---G-CA-A---A-AA--TATTGGCC-TTAAAATTA-----AA---------A---GATGA-TCA-AA-TTA-AA---G--GAG-T----TA-ATA--T-----AAATATGT-----T--A-TCAGAA-AT------T-----AAATAT-C--TCT--AA-C--AT--G-C-G---GATGATTTA-AC-CTCA--GCCCTGAAAA-AGC-AA-TTAT-------------AAC-----------------AA-TTCAA-ACGTTTT------GT--AA----TCATGC-TGG-A-TCA-AAAA-TAAATGTAGC-T----AAAA--CACAA-AA-A-TA-CAGAA---GTT---A-G-TGG--TA-TTAActata
gi|6 : atatttggatccaactcgtGA---TG-T----C--AA----AAA--CATGTAAA-AT-G--AATC--GAGG-TAT-ACGT-C--AGGGG-TGTCAtggtgctgtaagctgtttagacatttttatgggtaataataaagaacattgttacaaattgaattggattaaactacagttatgaagatatggaaaagctcttcgaatcatggaaaaggaggaaattgacaatatttggtaaatcatgtgtagtaaactctttggttatatctaaacttatatatgtcgggtcaatattacctttaccagacgaaaatgaaaatataataaaaaaggtgaaaagtagcatttgtaattttatatgggataaacgcgatagaatcaaacgtaatacgatagtttgcaatgtacatgtaggggacggcggcataggattaatcaattgaaagccataaaagcttcgtggat
gi|6 : G-TGTCATATTTC----TT-CGAT--GA-TA--TTTTTG-TTT--G-TA-A-TTA-AA--TTT-GGCACTTCAGATTA-----AG---------CTT-AATAA-AGA-AA-T-A-AG---G---ATAT----TATACA--TTTTCAAAAGATA-A-AGATT-G-TCAATG-ATGA--TATT----AAA-AT-TAGTCC--AA-C--AC--G-C-A---GATGATT-GTAC-TTTA--CCTTTGAAAG-ATG-AA-CTATCAT-T------AAAACTCG-CTC-TC--AAAGAAT-A-CAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-A--C-TAAATGTTTC-T----AAAA--C---A-GA-A-TG-CATAC-TTCTT---G-G-TGG--T--TAACAC--CAAAAACATTAACAAC-TTTT--GATA--TACA-AAATT-------------GT------------ATCAAACAG---TCT-C-GT-GTGTTTTT-ATTG-----GT-C-ATGA-TAAA----GA-TTA-TGTT-ACA-AAAAAT--AACTGGA-TA-AG----A--GGCA--T------ATCA-G-A---A-TGGAAA-AACTTT-----TCGAATCCTG----GAAAACTAG--A-------AAT-CTT-AC--TTCT--C-----TTTGGAAAAT---GTTG-TA---TAGTGAACACT-CTTG--CGAT-ATCTAAAACT-TG-TATA-T-GAGC-TCTATTTTAAATTTA-CC--A-CG--ACAAAAGA------AATAAAACA---CATG-CGAAAAATTATTT--TTTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATT-AAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AAACCA---AG-GT---GGTAAATAGTTATAA-T-GTGTG-ATG--TG-AATGTAAAACTAA----CAAT----------TCTTTGGA-----TA---G--ATGAAA--TACCAACC-TG-T-A--AGGTA--AATTGAAGTTATTCCTTGATTCTTTGTGTAG---ACAAAG-TG--G--TGTGAAT--TTTA-CTTATCTTACTTA---TACAAATGTAATTAG-AA----GT-TATC--AAAT-TATACCATTGT--GCATAACA-CACA--------------ATG--AAGATTAT-TTAT--TTTCTTTAATGA-AAGTAAAAGT--CTC---ATGCAATG-T-TACTAAAAATAT--TTTAGC-AA-CTG-AAG-AGATA--TTT-TTnnnnnnnnnnnnnnnnnnnnnnnnngtgtcatatttcttcgatgatatttttgtttgtaattaaatttggcacttcagattaagcttaataaagaaataaggatattatacattttcaaaagataaagattgtcaatgatgatattaaaattagtccaacacgcagatgattgtactttacctttgaaagatgaactatcattaaaactcgctctcaaagaatacaaatctttcagtaaggtatctggtatgactaaatgtttctaaaacagaatgcatacttcttggtggttaacaccaaaaacattaacaacttttgatatacaaaattgtatcaaacagtctcgtgtgtttttattggtcatgataaagattatgttacaaaaaataactggataagaggcatatcagaatggaaaaacttttcgaatcctggaaaactagaaatcttacttctctttggaaaatgttgtatagtgaacactcttgcgatatctaaaacttgtatatgagctctattttaaatttaccacgacaaaagaaataaaacacatgcgaaaaattatttttttcatttctatggaatagaaaagacagaattaaagaaatacaatgatcggaacaataaaaccaaggtggtaaatagttataatgtgtgatgtgaatgtaaaactaacaattctttggatagatgaaataccaacctgtaaggtaaattgaagttattccttgattctttgtgtagacaaagtggtgtgaattttacttatcttacttatacaaatgtaattagaagttatcaaattataccattgtgcataacacacaatgaagattatttattttctttaatgaaagtaaaagtctcatgcaatgttactaaaaatattttagcaactgaagagatattttt
gi|8 : gatgtcaaaaacatgtaaaatgaatcgaggtatacgtcaggggtgtcannnnnnnnnnnnnnnnnnnnnnnnn-C-G--GTGTTTTT-ATTG-----GC-C-ATGA-TAAA----GAATTA-TGCT---ACAAAAAT--AATTGGA-TA-AG----AT-G-TA--T------ATCA-G-A--TA-TGGAAT-TTTTTT-----TCGAATCATG----GAAAACTAG--A-------A-TTCTT-AC--T-CT--T-----TTTGGGAAAT---GTTG-TA---TCGTGAACACA-CTTG--CAAT-ATCCAAA-CT-TG-TATATG-TAGCATCTGTATTAAATTTA-AC--G-CGACA-AAAAGA------AATAAAACA---TATG-CGGACAATTATTTTGTTTTCATTT-C-TATGG-AAT-AAAAAAG-ATAGA-ATTAAAAGAAATA-CAAT-GAT-T----GGAACAAT---AGAA--CA---AG-GT---GGT-ATTAAT----ATT-GT-TG-ACA-TTG-AATCT-AAACTAAAAG-CTATCAAAG----CTTCTTGGA-----TT---G--ATAAAA--TGCAAACC-TG-TAA--AGGTA--AATTGAAATATTTTCTTGATTCTTTGTG
gi|7 : TTTTT-ATGG-----GT-A-AT-AATAAA----GAAC-A-TTGTTACA----AATTGAATTGGA-TT-AA----ACTA-CAGTT------ATGAAG-A--TA-TGGAAA-AGCTCT-----TCGAATCATG----GAAAAGGAGGAA-------A-T--TG-ACAAT-AT--------TT-GGTAAAT---CATG-TG---TAGTAAACTCT-TTGG--TTAT-ATCTAAA-CT-TA-TATATG-TCGGGTCAATATTACCTTTA-CCAGA-CG--A-AAATGAAAATATAAT-AAA-A---AAGG-TGAAAAGTAGCAT--TTGTAATTT-TATATGG-GAT-AAACGCG-ATAGA-ATCAAACGTAATA-CGAT-AGT-T----TG--CAAT---G-TA--CATGTAG-GG---GAC-GGCGGC----A-T-A---G-G-A-TTA-A---T-CAATTGAAAG-CCATAAAAG----CTTCGTGGA-----T
gi|19 : atatttggatccaactcgtttaaaagttgatgggaaaaaacatgcttgatgtcaagaggaataagacaagggtgtccaatttcggcgttatgatacatatttgttgcaaaaatattggccttaaaattaaaagatgatcaaattaaaggagttaatataaatatgttatcagaaattaaatatctctaacatgcggatgatttaacctcagccctgaaaaagcaattataacaattcaaacgttttgtaatcatgctggatcaaaaataaatgtagctaaaacacaaaaatacagaagttagtggtattaatggtgctgtaagctgtttagaca--TTTACTTTT-T-TATGG-AAT-AAAAAA--ATAGA-ATTAAACGAAACA-CATT-AATAC----GGAAT-AT---A-A----A---AG----------ATTGGT----G-TAGT-CG-ATA-TAG-AGTCT-AAACT
gi|18 : gata----CTTTTTGTA-----TATTAG--ATAAAA--TACTAA-CCTG-TAA--AGGGA--AGTTGAAGTATTTCCTTGATTTTATGTGTAG---ACAAA-TTG--G--TATGGAT--TTTA-CTTATCTTACTTA---T
gi|16 : atgttaacttcgcTTATTTAACGA-ATGTAAAAAAGATTC---CC-CAA----------AAAAT-T--TT--GC----CTG-AAC-C---G--CTTATTAAAGGAATCGATAT------GGTGTAATAAGA-AATTC-ATGT---TAAA-AAACAAAG-CCAATATATTTT--CATTAA-TTTGGCTATACAAAG--TGG----TTTTTAGAT----TAT-----TTAAATGAT-ATTGTA-AAT---GAAAATGGT--ATT--A-A-ACC-TA-CA--GAATGGTTC---
gi|11 : ATCA-TATA-AAGGAAAGAC-AATTTGCTTTAACA--AAACT-GG--ATAAAAAG--TTG-ATTTCTTG---T----AATG-----TAAA-GAT-ATTTTTAGAT---GAAACTGGT--TTGCAA-A-ATC-AGCCA-C-AATGATTC---ATCG----TTAA-A-TTTAGC-TTG-AATAGCGGAAAATTGCGTT--------ATCAC--AT----AT------------------AAT----ATATG-TA--CG--GAA-TAAGT--GA-CATG--TCTAATCAA----AA-A--TA-TGCTCAAGTGAAAGCCACCATTGAATTTATA--TTTTTAC-AGAAATCA-CTTTGTGGAAAC--CCACTCA-ATATAA-G--T-----TTTTTTC
gi|21 : --GA-CAT----CGAA--AATACAAA-A--TA-TG-TCAA-TGAAAGCCA-CATCAGA--GATA--TTTGTACAGAAATCA----CTGT-GAACC--A--CTGA-ATACAA-G--Ttctattggcgtata
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): AAGTACGTGATAAAAAATTTGAAGGACAAACTCCTCAGCAATCTTTTATTGCCAAGAAATTTTCAACGTAATACAGAGTAAATCTTCATGGATCCTTGATTATACACAAAAAAATCAGGTAAAATGTATGATTTGAAAAGTTTCTGAGTTTAATATTCACAATCATATTTAATAATCTTGTAGCTAAACAGAAATTTCACTTAGCAAATATTGGTATAGTGATATGAACGAAAAACTGTTTATCGTGTCAAAATAGTAAATAAATGAAAATAATGAGCATCTT
Unaligned ( gi|13 ): TACGTGATAAAAAATTGAGACACCTCCATCACCAATCTTTTACTTGCAAGAAATTTTCATATGCAGAGCTCAATCCTTTTCCATGGCCCTGATTTACACACAAAAAATCCAGTAAAATGTATGATAGAAAAGTTGCTGAATTTAATTTCAATTAATTTACCATAACTTGATAGCTAACCAGATATTTACATTAGCAAGTGAATAGTTGATATTGAACAAAAAACTGTTTATCCTTGCCCAAAGTAGTAATTGTAAATAATGAGCATTCTT
Unaligned ( gi|14 ): TATTACGTGATAAAAATTGAGACACTCATCACCAATCTTTTATTTCAAGAAATTTTCATATGCAGAGTAATCTTCCATGGCCCTTGATTTACACACAAAAAATCAGTAAAATGTATGATAGAAAAGTTGCTGAATTTAATTTCAAATTATTTAATAACTTGATAGCTAACAGATATTTACTTAGCAAGTGAAATAGTGATATTGAAAAAAAACTGTTTATCTTGCCAAAGTAGTAATGAAATAATGAGCATCT
Unaligned ( gi|20 ): TTTATAGGAATAAATGCAAGAATTATAGTAGATCTTTATGAATATTGCGAAGAAAATATTGCTGGTATTCTTTTATTTCTTGATTTTCAAAAA
Unaligned ( gi|22 ): TGTTAACTTCGCCTTTTTGTATACTAGATAGAGT
Alignments
lowQualScore : 1111111 222222222 1111 222 1 111 44444444444444444444 1111 111 11 22222 11 111 11 1 1 22222222 1 1 222222 111 1111 1111111111 11111 1 88888888888888888888888888888888 111 11 2222222222222222 1111 111111111 22222222222 1111 1 1111 1111111 33333333 111 111 1 222 111 1111111 111 111 2222 222222222 1 1111 11111 111 111 22222 222 111 1 1 1 2222 1 22 11 11 111 6666666666666666666666666 1 11 11 3333333 3333333333 11 11111111 22222222 33333333 1 1 22 11 33333 11 222 22222222 1111 111 11 11 222 111 1 2222 111 1111 22 1 111 11 2222 11 22222 1 11 11 1 11111 11 11 2222 11 111 11 2 11111
lowQualScore : 4 55 8 4 0000000 666 3 8888888 111111111 2 3 3 6666 55 44 3 3 5555 6 555 66 4 6666 4 3 222 4 4 88 4 2 0 66666666666666666666 5 5 5 5 5 888 66 5 2222 5 999 77 5 555 33 5 5 8888 00000 5 77777 77 99 77 5 5 000 5 8 5 55 1 0 1 99999999 1 5 5 1 77 777 5 0 1 333333 77 000 1 5 5 5 5 5 5 7777 77 2222222222 5 77 77777 5 99999 5 5 55 5 77 5 2 5 5 22222222222222222222222222222222 5 555 5 5 11 0 5 8888888888888888 0000 888 555555555 66 5 5 5 0 66666666666 5 4444 5 0 888 66 7777 5 4444444 5 22222222 5 000 5 000 6 99 6 6 6 6 77 4 3 6 0 777 111 7 6 6 6 6 99 77 999 5 5 5 5 5 5 3333333 555 5 77 000 5 8888 2222 000000000 77 5 0 1 5 1 5 6 2 7777 44444 111 99 99 6 99 99 6 444 44 00000 8 666 8 444 0 0 0 1111 0 33 33 3 33 666 9999999999999999999999999 0 33 33 8 4444444 8 8 8888888888 0 11 44444444 8 22222222 8 4 2 77777777 0 0 8 8 00 88 8 11 8 00000 11 111 77777777 5555 8 8 8 444 66 0 11 8 8 8 8 444 444 0 1111 111 3 4444 33 0 777 3 33 1111 2 33 44444 0 33 33 0 55555 8 11 11 0000 11 8 8 8 1 666 99 3 1 8 3 5 0 55 8 8 44444 2
lowQualScore : . .. . . ....... ... . ....... ......... . . . .... .. .. . . .... . ... .. . .... . . ... . . .. . . . .................... . . . . . ... .. . .... . ... .. . ... .. . . .... ..... . ..... .. .. .. . . ... . . . .. . . . ........ . . . . .. ... . . . ...... .. ... . . . . . . . .... .. .......... . .. ..... . ..... . . .. . .. . . . . ................................ . ... . . .. . . ................ .... ... ......... .. . . . . ........... . .... . . ... .. .... . ....... . ........ . ... . ... . .. . . . . .. . . . . ... ... . . . . . .. .. ... . . . . . . ....... ... . .. ... . .... .... ......... .. . . . . . . . . .... ..... ... .. .. . .. .. . ... .. ..... . ... . ... . . . .... . .. .. . .. ... ......................... . .. .. . ....... . . .......... . .. ........ . ........ . . . ........ . . . . .. .. . .. . ..... .. ... ........ .... . . . ... .. . .. . . . . ... ... . .... ... . .... .. . ... . .. .... . .. ..... . .. .. . ..... . .. .. .... .. . . . . ... .. . . . . . . .. . . ..... .
lowQualScore : 4 55 3 0 8888888 444 6 6666666 555555555 0 6 6 7777 00 66 6 6 5555 7 777 11 4 2222 4 3 222 4 4 00 4 7 9 66666666666666666666 0 0 0 0 0 888 99 7 1111 7 666 99 7 111 66 7 7 0000 00000 7 77777 99 33 99 7 7 000 7 4 7 77 4 7 4 77777777 9 7 7 4 99 999 7 1 4 777777 99 000 7 7 7 7 7 7 7 9999 99 3333333333 7 11 33333 7 99999 7 7 99 7 99 7 1 7 7 11111111111111111111111111111111 7 777 0 0 99 1 0 1111111111111111 6666 888 999999999 99 0 0 0 1 00000000000 0 8888 0 0 888 99 9999 7 4444444 7 44444444 7 000 7 000 7 22 7 7 7 7 77 7 2 7 7 555 777 3 7 7 7 7 22 99 666 7 7 7 7 7 7 1111111 777 7 99 000 7 0000 3333 444444444 44 7 1 4 7 0 7 7 5 9999 33333 777 22 22 7 22 22 7 000 00 00000 0 000 0 000 0 0 0 2222 0 88 22 2 88 555 5555555555555555555555555 0 22 88 0 8888888 0 0 0000000000 8 00 66666666 0 88888888 0 2 5 88888888 0 0 0 0 88 88 0 00 0 00000 00 888 22222222 0000 0 0 0 000 44 8 00 0 0 0 0 444 000 0 2222 000 2 8888 88 0 000 2 22 2222 5 88 55555 0 88 88 0 88888 0 00 00 4444 00 0 0 0 0 666 00 2 0 0 2 0 8 66 0 0 55555 5
consensus : TCTTTAG-A--TTAAAAAATA-ATG-GN-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GGGG-NATA-CGT-C--A-GGG-TGTCCCATTTCTTGCG--AT-GATA--TTTT-TG-TT---G-TA-A-TTGAAA-TTCTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-A-AAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--C---AG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-ATTA-A-AAA-----------TTA----------GT------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATGTTTAC-ACAAAAAT--AACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGG-AATCT-----T-ACT-CT--T-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-GTAGCATCTATTTTAAATTTA-CCGCGAC-A-AAAAGAA---ATAA-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-G-T--GGT--ATTAGT----A--T-GT-TG-ATA-TTG-AATNT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACCTG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTG--G--TGT-GAAT-C-TTTA-CTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATCA-AAATTAT-ACCATTGT--GCAA-TAA-A-------------TAC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAA----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCGCAATCCCTGTG--GC----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTT-AC-A--GA-CTGGC-A--TAAAAAG--TGG-GTTTTTTT---T----TATG--TTAAA-GAT-ATTGTT-GAT---GAAAATGGC-TTTG--A-A-ATC-AA-CA-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-A--AGCGG-AAATTG-GTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAA--AATA--AAA--TA-TG-TCAA-CGAAAGCCACCATAGGA--TATA--TTTTTACA-GAAATCA-CTCTGTGGAAACCCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
Reference ( family-1218 ) : TCTTTAG-A--TTAAAAAATA-ATG-GN-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GGGG-NATA-CGT-C--A-GGG-TGTCCCATTTCTTGCG--AT-GATA--TTTT-TG-TT---G-TA-A-TTGAAA-TTCTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-A-AAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--C---AG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-ANTA-A-AAA-----------TTA----------NT------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATGTTTAC-ACAAAAAT--AACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGG-AATCT-----T-ACT-CT--T-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-NTAGCGTCTATTTTAAATTTA-CCGCGAC-ACAAAAGAA---ATAA-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-G-T--GGT--ANTAGT----A--T-GT-TG-ATA-TTG-AATNT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACCTG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTG--G--TGT-GAAT-C-TTTA-CTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC--AAATTAT-ACCATTGT--GCAA-TAA-A-------------TAC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAA---GT-TC-AT-CAA-G-T-C----AAAATAT--TT--NC-AA-CTG-AAG-A---A--TTT-TTATCGCAATCCCTGTG--GC----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTT-AC-A--GA-CTGGC-A--TAAAAAG--TGG-GTTTTTTT---T----TATG--TTAAA-GAT-ATTGTT-GAT---GAAAATGGCCTTTG--A-A-ATC-AA-CA-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-A--AGCG--AAATTG-GTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAA--AATN--AAA--TA-TG-TCAA-CGAAAGCCACCATNGGA--TATA--TTTTTACAGGAAACNA-CTCTGTGGAAACCCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|1 : CTTGAG-ACATTAAAGAATA-ATG-GG-TCCGAGC---C-TTCAAC--AA----A----CATGTAAA-CT-G--AATC--GAGG-AATA-CGT-CCAG-GGG-TGTCCTATTTCTT-CG--AT-GATA--TTTT-TT-TT---GTTA-A-TTGAAA-TTTTAGCCATTCAGATTA-----CAGCTAACATGCT--AATAA-AGA-AATT-ACAGCGCG--GAT-T----TA-ACATCTT--CAAA-AGATCA-AAGAT--G-TCAAAG-A-GA--T-AT-----AAA-A-T---GTCC--AACA-AC--GCC-A---G-ATGATTGGTAC-TTTA--CCTTTGAAAGCATGAA-CAATCATATTTTTTAAAAACTCG-C-TC-GC--AA---AAA-ATCAACATCTTTCTAG---GT--GAACCGGTAT-CTTGGTATT-G-AAAC-TAAATGTTTCT----AAAAACC---AG---A-TG-C-TACTT-CTT---GCGCTGG--TACTGAAACA-C-AAAAACATTAACA-C-TGTTCAGAT-ATAA-A-AAATTAAATACATCTTA----------GT------ATCAAA-AC---TCT-C-GGCGTGTTTTTAATTGCCTCCATGC-AT-A--AAA----GA---ATTATGTTTA--ACAAAAAT--AACTGGA-T-A-ACATGCA--T--------ATCA-GCAACTA-TGGAAA-AACT---TT--TCGAATCCTGCCGCAAAAACTAGA-AATCT-----TCACT-CTC-T-----TT-GGAAAAG---CTTG-TA---TCGTGAACACTCCTTGCCCGATAATCTAAA-CTCTGCTATATCGTAGCATCTACTTTAAATTTACCCGCGAC-A-AAAAGAA---ATAA-ACACAGCATG-CGCAAAAATAT----------------TGCGA-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-CGCGAGAAACAATAAAA-AA--CA---AGCG-TCGGGCTAATTAGT----AT-T-GA-TG-ATATTTGCAATAT-AAACCATAAGACAATCAAAGCCTTCTTCTTGGAGACTGTA---GCAATAAAA--TACTAACCTGCTAA--AGGCGACAATTGAAGTATTTCCTTGATTCTTTG-ATAAGACACACAATTGCCG--CGTGGAATAC-TTTA-CTTATCTTACTAA---TATAAATG-AATT-GCAA----GTCTATC--CAAATATAACCA-TGT--GCAATTAA-ATTACCCTACTGTTTAC--C--A-AGA-TATATCTACTTTCCTTTAATGACATGTAAAA---TC-TCAAT-CAA-GCC-C----AAAATATTATT--TCAAA-CTGCAAGCA---A--TTT-TTATCTCAACCCCTGTG--GCTGCGAACAATA-AATTC-TTATCA-TATA-AAGGAAAGA-CAATTTGCTTT-AC-A--GA-CTGGC-AGTTAAAAA---TGG---TTTTTT---A----TATGGCTTAAA-GATCATTGTT-GAT---GAAAATGGCCTTTG--A-ACATCAAA-CA-C-AAT-GTTCTGAAT-GCTTCTTAACATTTTACCTTTGCA--AGCG--AAATTG-GTTATGTGTGAA-TAT-AATATGCATGAAATACGCTGTTTAAGAAATGTTAATTTGCTA--CGCCGAAGTA--TTGAA-CATGCCTCTAA--AATT--AAAATTA-TG-TCAA-CGAAAGCCACCATAGGA---ATAATTTTTTACA-GAAATCA-CT-TGTCGAAACCCACTGACATACAACGGTTGCCAGTTTTTT-TAT
gi|10 : aagttataggaatacaaatcgcaacgattattagtagcatatttacgatatattgcgaagaaaataatattgactggtattcttttttattcttgatttatcaaaaacgcattttgatcctgcttgagtggaatttactgcttcaaagcttcttaaatctatttaatctctcggaataatttataaacgtgggtaaatatactatatcaaagaacctatcTTTAG-A--CTAAAAAATA-ATA-AT-T--GGTT---G-T----CAAAA----A----CCTGTACA-AT-G--AGGC--GGGG-CATT-CGT-CA-A-GGA-TGTCcgcgctatatacgtttgattagaaaatttgcagacacctcatcaccaatcttttattgcaagaaatcatttcatcatacagcagtaaatcttcatggccttgataccacaaaaaatcagttaaaatgtcatgcacagaaaagctctgcctgaatcttaattcaaatattaataactttgctagcaaacagccatatcgtacttagcaaatgcgaatactcatattgaacaaaaaaaactgttctttgtactcttgtcaaaaagtgtagctaatgaaaataatgagcatct
gi|11 : atcagcctgcctatataaaagggcgatatattggtatgaatacatgtactagacttattgtcgatatttttgattgttgtgaaaataatgaagaggcaattttgcttttactcgattttcaaaaggcatttgatttcgtcgaatggtcttttatgataaaaacactcgagttctttaattttggacaagaattcattaaatggattcaaatcttatacaaaaatccagaaATCA-TATA-AAGGAAAGA-CAATTTGCTTTAACAA--AA-CTGG--A--TAAAAAG--TTG-ATTTCTTG---T----AATG---TAAA-GAT-ATTTTTAGAT---GAAACTGG--TTTGCAA-A-ATC-AGCCA-C-AATGATTC---ATCG----TTAA-A-TTTAGC-TTG-AATAGCGGAAAATTGCGTT--------ATCAC--AT----AT------------------AAT----ATATG-TA--CG--GAA-TAAGT--GA-CATG--TCTAATCAA----AAA--TA-TGCTCAAGTGAAAGCCACCATTGAATTTATA--TTTTTACA-GAAATCA-CTTTGTGGAAACCCACTCA-ATATAA-G--T-----TTTTTTC
gi|15 : TTTTTAA-A--TTAAAAAATA-ATG-GG-T--GGAT---G-T----C--AA----AAA--CATGTAAA-AT-G--AGTC--GGGG-AATA-CGT-C--AGGGG-TGTCCCATTTC-TGCG--AT-GATA--TTTT-TGTTT---G-TA-A-TTGAAA-TTCTAGCTATTCAGATTA-----GA----------TGAAATAA-AGA-AA-T-A-AG---G--Gtctattggcgtata
gi|16 : ggaattttatgctcaaagttctaaaatcatataatttggtgataattttataaagtggataaatatactatataaagaacctaTTATTTAACGA-ATGTAAAAAAGAT-TC-CC-CAA----------AAAAT-T--TT--GC----CTG-AAC-C---G--CTTATTAAAGGAATCGATATGGTGT----AATAAGA-AATTC-ATGT---TAAA-AAACAAAG-CCAATATATTTT--C-ATTAATTTGGCTA--TACAAAG--TGG----TTTTTAGAT----TAT---TTAAATGAT-ATTGTA-AAT---GAAAATGGTATT----A-A-ACC-TA-CA--GAATGGTTC---gata
gi|17 : TTCAG-G--ATGAAAAATA-ATG-GT-T--GGAT---A-T----C--AAGA--A----CCTGTAAA-AT-G--TCTC--GAGG-CATC-CGT-C--A-AGGATGTCCCATTTC-TGCT--AT-AATT--TTTT-TGTTT---G-TT-A-CTGAAA-TTCTCGCTATTCAGATAA-----G
gi|18 : tacacggaaccttta----CTTTTTGTA-----TATTAG--ATAAAA--TACTAACCTG-TAA--AGGGA--AGTTGAAGTATTTCCTTGATTTTATGTGTAG---ACAAA-TTG--G--TAT-GGAT---TTTA-CTTATCTTACTTA---T
gi|19 : atgttaacttcgcT--TTACTTTT-T-TATGG-AAT-AAAAAA--ATAGA-ATTAAACGAAACA-CATT-AATAC----GGAAT-AT---A-A----A---AG-ATT--GGT------GT----A----GT-CG-ATA-TAG-AGTCT-AAACT
gi|2 : gataTTTAG-A--TTAAAAAATA-ATG--C-T--GGAT---G-T----C--AATAAGA----CATGTAAA-AT-GTGAATT--CGGG-AATA-CGTTC--A-GGGGTGTCCCATTTCTC-----AT-GACA--TGTT-TG-TTAGTG-TAGA-TTGAAAATTCTAGCTATTTAGATTAAGATGGA---------C---AATAACAGA-AA-T-A-AG---GTGGAT-TGGTATG-ATT--TT--CAAA--GAT-A-GAGAT--GATCAAACCATGA--T-ATCCCTTAAA-A-TATAGTCCCTAGCTTAC--G-C-ATGGG-ATGATTTGTACATTTAAACCTT-GAGAG-ATGAGTCTATCAT-GT-----GTAACTTGAC-TCATCCGAAA-CGAA-ATCAATATCTTTCC-A---ATTAAA---GGT-T-C-TGGTA-T-GGAAACATAAATGTTTCTTTTAAAAA--C----G-A-T-TGACATACTT-CTT---TTG-TGA--CT-TGAAACA-T-CAAAACTTTAACA-CTTTTT--GAT-ATTA-AGAAA-----------TTAATACATCTGTGT------ATCAAA-AAAGCTCT-CAG--GTG-TTTT-ATGA-----G----------AAATCCTGATTCATTATGT-----ACAAAAA---AAATGGA-T-ATAGATGTAG-TGTTATGGAATCA-GAA--TATTGGAAACAACTATATTAGTCGAAATCAGT---GAAAACTAGA-AAACTGCATCT-ACT-CT--TTGTGGTT-GGAGTATTAAATTG-TAAATTCGTGAACAC
gi|21 : ttcatataattaaagccaatgaaaaatattcttctgtttttgtgacaattcttaatgacgaagtgatatacttgataaacatgtatgcgttttaccagaaattatatacgttctccataatgtagagactcgaaattacagatgcttacttattcaatattagatttggagacaaaaatctatatcatgactgataaatcttttcttagatctccactcacaatgaaagaaagtcgttgtgcctttgtttcaaaatcatgaaattagaggtaagaaaggtgccttgggttaacggtctatcccctcactgaacgttttagagacatttggcgagaaactcaaacaatacttttttttcttctgttgataagcatccttgataccgaagaaatccgtgtttaacatttacacaaagtattaagctgtttactaaatacataaaatggaagggtgaaaaatacctcccttggtacatgataactattaggtacccatagagtcttacaaacacaaggactaataaaatcattgggcttttacgttggcgaagaggctacaaaaaataatagattaagtttaatagcaatattatgatcagtcaagctatcagctaattaaaggcataatgcgtctattcaataggaataaaatcaagaaatctatcttatagtggcatattcttggttgtgaataaattgcgaaggaaatcgataactacttgatgggtgatttgcttcttatttcttcgatttcagagagaagcatttttaagatgatcatattgcatattggatattttaatgtttaatcataggagtctaaaagaatcatttttaatatttgggtgatgaaaaaatctttataggaagtaatggagtataaaaaactatacatatatagtaagatacctattct--GA-CAT----CGAA--AATACAAAA--TA-TG-TCAA-TGAAAGCCA-CATCAGA--GATA--TTTGTACA-GAAATCA---CTGTGAA---CCACTGA-ATACAA-G--T
gi|3 : TTAG-A--TTAAAAAATATATG-GGCT--GGAT---GAT----C--AA----AAAAACATGTAAA-ATTG--AATC--GAGG-TATA-CGT-C--A-GGG-TGTCATATTTCGGTCG--ATTGA-A--TTTTGTT-TT---G-TA-AATTGAAT-TTTTGGCCATTCA-ATTA-----AG---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-ACAAGAT--G-TCAAAG-ATGA--TTAT-----AAA-AAT-TAGTCC--AACC-ACCGG-C-A---GGATGATT-GTAC-TTTA--CCTTTGAAAGCATGAAACTATCAT-T------AAAACTCG-CCTC-TC--AAAAGAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCTT---AAAA--C---AGGA-A-TG-CATACTTTCTTTCCG-G-TGGGTTA-TGAAACA-CCAAAAACATTAACA-C-TTTT--GATAATTA-A-AAA-----------TT-----------GT------ATCAAA-AG---TCTCC-G--GTTGTTTT-ATTG-----GT-CAAT-A-TAAA----GA---ATTATTTTTAC-A-AAAAAT---ACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGAAAACAACT---TT--TCGAATCCTG----GAAAACTAGGAAATCT-----T-ACT-CTTCT-----TT-GGAAAAT---GTTGTTA---TCGTGACCACT-CTTG--CGAT-ATCTAAA-C--TG----AA-CTAGC-TCTATTTTAA--TTA-CCAC--CGACAAAAGAA---AT-A-A-ACA-CATGCCGAAAAATTA--TT--TTTCATTTCC-TATGGAAATAAGAAAAGCACAGACATTAAAAGAAATACCAATGGAT-C-----GAACAATA--A-AA--CA---A--G-T--GGG--A-TAGT----ATGT-GT-TGCATACTTG-AATGT-AAACTAAAAG-CAATCAAAGC---CTTCTT-GA-----TA---G--ATAAAAATCACCAACCTG-TAATCAGGTA--AATTGAAG-ATTTCCTT-ATTCTTGGTGTAG---ACAAAGTTG--GT-TGT-GAAT-CTTTTA-CTTATCTTACTTATATTACAAATG-AATT-G-AACGTGGC-TATCAAAAATCAT-ACCATTGTTCGC-A-TAA-A-------------TAC--CAAG-AGA-TA--TTTA--TTTCTTTAATGA-ATGTTAA-----T-TC-AT-CAA-G-TCC----AAAATAT--TG--CC-AATCTG-CAG-A---ACTTTT-TTATCACAAT-CCTGTG--GC----AACAATACAATTCATTATCACTATACAAGGAAAGA-CAATTTGCTTT-AC-A--GA-CTGG--A--TAAAAAGGTTGGCGTTTTCTT---TTATCTATG--TTAAA-GAT-ATTGTT-GATAAAAAAAATGGCTTTTG--ACA-ATC-AA-CACCAAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-A--AGCG--AAATTG-GTTA--TGTGAATTATAAAT----ATGAAATA--CTGTTTAAGAACT-----TATG-TAACCG--GAA-TA--T--GACCATG--TCTAA--AAGA--ACA--TATTG-TCAA-CGAAAGCCACCATAGGA--TATAC-TTTTTACAGAAAACAACCTCTGTGGAAACCACCTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|4 : TTTTTAGGA--TTAAAAA-TA-ATG-GT-G--GGATTCTG-T----C--AA----A----C-T-TAAATAT-G--A-TC--GGG--AATAACGT-C--A-GGG--GTTCCATTTCT-GCG--AT-GCGA--CTTT-TGTTT---G-TA-A--TGAAA-TCCATGCTATTAAG-TTA-----GA---------GTG-AATAA-AAAGAA-T-A-A----G--GAT-T----AG-AT---TT--CAAAGAGAT-A-GAGATTGG-TCAAAG-ATGAGGT-AT-----GAA-A-A-TAGTTC--AGC--AC--G-CAA---G-AT-ATCTGTAT-CTTAATCACTTGAAA--AT--A-GTATCAT-TG-----ATAA-TTG-C-TCTTC--GAA-GAAATACAAA-ATCTTTC--AAACAT--AA---GGTTT-C-T-GTA-T-G-AAAC-T-AATTTTTC-----AAAA--C---GG-ACATTG-CATACT---CT---G-G-TGA--CA-TG-AACATC-AAGAA-ACTAAT--C-CTTT--GAT-A-TA-A-AAA-----------TTAGAGAG-----CTATGTGAATCAAA-AAC--TCT-C-G--GTATTT-------------------------A----CA---ATTA-----ACTACAAAAAT--AATTGCATT-A-AGATGTAT-T--------ATCA-T-ATTTA-TGGAAA-AACT---TT--TCGActata
gi|5 : ggagcctgtacgaatgaattaaaacacgcggatgtataacgttcggttttgggatcaaaataatgggacggataacatgatactttggataacgtatgcgttttaccagaaaattaatatagtccaccaaatgtaggaagactccggaaattacaggatgtgtctcactatagggagtattagatggtaaaaaaggaatatgatcgtatcatatattgacacctaatgattctttccacatcagagagtgggaagaagtcgttgtgctttgttcacagaactgtaataagagtcctgggttagacggtctcccctctgaagttcttatcgagacattttgggagaaaactcaagccataactgtttttttgcttctattgataagtgcatttgaagaatgaaatgtttaaacatttttacaataagattagcctgtttttatcttactatctagatagagaggtagagtgaatatccagagagtccggtcgtgaatggaaattaagagatagacctgcattaaatcttactctaaaatcacagactgattaaaaatcatatggctttaccactttgggcgaagaggacaaaaaatagaaagttcatagcaaatgatattcactgtatagatttatatggtaaatcaatcaagaatatagtgggcgagtatctcttgggaacacttagcacacaaaacagaatccattttggctcacttcgtcacagaggagcgctaatgttggatctctaatgaaataagttttatgtgatataatatagatgcatatctaactttagcgtaaagaggtggttgtgagtaaatgataaatatagctaatatgtaaagaactaTCTTTAG-A--TTAAAAA-TA-ATG-GG-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GAGG-TATA-CGT-C--A-GGG-TGTCATATTTCTTTCG--AT-GAT---TTTT-TG-TT---G-TA-A-TTG-AA-TTTTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-ATAAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--C---AG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-AATA-A-AAA-----------TTG------------------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATATTTAC-ATAAAAAT--AACTGGA-T-A-AGA-GCA--T--------ATCA-G-A--TA-TGGAAA-AATT---GT--TCGAATCCTG----GAAAACTA-G-AATCT-----T-ACT-CT--C-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-TTAGCATCTATTTTAAATTTA-CCACGA----AAAAGAA---AT-A-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-G-T--GAT--ATTAGT----A--T-GT-TG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAA-CTG-TAA--AGGTA--AATTGAAGTATTTCCTT-ATTCTTTGTGTAG---ACAAAGTTG--GGTTGT-GAAT-C-TTTACCTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATCA-AAATTA--ACCATTGT--GCAA-TAA-A--------------AC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAA-----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCACAATCCCTGTG--------AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTT-AC-A--GA-CTGG--A--TAAAAAG--TGG-GTTTTTTT---T----TATA--TTAAA-GAT-ATTGTT-GAT---AAAAATGGC--TTG--A-A-ATC-AA-CA-CAAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-A--AGCGA-AAATTG-GTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAA--AATG--AAA--TA-TG-TCAA-CGAAAGCCACCATAGGA--TATA--TTTTTACAAGAAACAA-CTCTGT-GAAACC--CTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|6 : GAT---G-T----C--AA----AAA--CATGTAAA-AT-G--AATC--GAGG-TATA-CGT-C--AGGGG-TGTCta
gi|6 : G-TGTCATATTTCTT-CG--AT-GATA--TTTT-TG-TTT--G-TA-A-TT-AAA-TT-TGGCACTTCAGATTA-----AG---------CTT-AATAA-AGA-AA-T-A-AG---G---ATAT----TATACA--TTTTCAAA-AGAT-A-AAGATT-G-TCAATG-ATGA--T-ATT----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATT-GTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-T------AAAACTCG-C-TC-TC--AAA-GAAT-A-CAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-A--C-TAAATGTTTCT----AAAA--C---AG-A-A-TG-CATACTT-CTT---G-G-TGG--T--TAACAC--C-AAAAACATTAACAAC-TTTT--GAT-A-TACA-AAA-----------TT-----------GT------ATCAAACAG---TCT-C-GT-GTGTTTTT-ATTG-----GT-C-ATGA-TAAA----GA----TTATGTT-AC-A-AAAAAT--AACTGGA-T-A-AGAGGCA--T--------ATCA-G-A---A-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGA-AATCT-----T-ACTTCTC-T-----TT-GGAAAAT---GTTG-TA---TAGTGAACACT-CTTG--CGAT-ATCTAAAACT-TG-TATAT-G-AGC-TCTATTTTAAATTTA-CCACGAC-A--AAAGAA---ATAA-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATT-AAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AAACCA---AG-G-T--GGTA-AATAGTTATAA--T-GTGTG-ATG--TG-AATGTAAAACTAA----CAAT----------TCTTTGGA-----TA---G--ATGAAA--TACCAACCTG-T-A--AGGTA--AATTGAAGTTATTCCTTGATTCTTTGTGTAG---ACAAAG-TG--G--TGT-GAAT---TTTA-CTTATCTTACTTA---TACAAATGTAATTAG-AA----GT-TATC--AAATTAT-ACCATTGT--GC-A-TAACA-------------CACAAT--GAAGATTAT-TTAT--TTTCTTTAATGA-AAGTAAAA---GTCTC-ATGCAATG-T-TACTAAAAATAT--TTTAGC-AA-CTG-AAG-AGATA--TTT-TTannnnnnnnnnnnnnnnnnnnnnnnngtgtcatatttcttcgatgatatttttgtttgtaattaaatttggcacttcagattaagcttaataaagaaataaggatattatacattttcaaaagataaagattgtcaatgatgatattaaaattagtccaacacgcagatgattgtactttacctttgaaagatgaactatcattaaaactcgctctcaaagaatacaaatctttcagtaaggtatctggtatgactaaatgtttctaaaacagaatgcatacttcttggtggttaacaccaaaaacattaacaacttttgatatacaaaattgtatcaaacagtctcgtgtgtttttattggtcatgataaagattatgttacaaaaaataactggataagaggcatatcagaatggaaaaacttttcgaatcctggaaaactagaaatcttacttctctttggaaaatgttgtatagtgaacactcttgcgatatctaaaacttgtatatgagctctattttaaatttaccacgacaaaagaaataaaacacatgcgaaaaattatttttttcatttctatggaatagaaaagacagaattaaagaaatacaatgatcggaacaataaaaccaaggtggtaaatagttataatgtgtgatgtgaatgtaaaactaacaattctttggatagatgaaataccaacctgtaaggtaaattgaagttattccttgattctttgtgtagacaaagtggtgtgaattttacttatcttacttatacaaatgtaattagaagttatcaaattataccattgtgcataacacacaatgaagattatttattttctttaatgaaagtaaaagtctcatgcaatgttactaaaaatattttagcaactgaagagatattttt
gi|7 : gatgtcaaaaacatgtaaaatgaatcgaggtatacgtcaggggtgtcannnnnnnnnnnnnnnnnnnnnnnnn--TTAAAAGTTG-ATG-G-----GAA-----------A--AA----A----CATGCTTG-AT-G----TCAAGAGG-AATA-AGA-C--AAGGG-TGTCCAATTTCG-GCGTTAT-GATACATATT-TG-TT---G-CA-A----AAA-TATTGGCC-TTAAAATTA-----AA---------A---GATGA-TCA-AA-TTA-AA---G--GAG-T----TA-ATA--T-----AA-ATAT-----GTT--A-TCAGAA-AT-------T-----AAATA-T-C--TCT--AAC--AT--G-C-G---G-ATGATTTA-AC-CTCA--GCCCTGAAAA-AGCAA-TTAT-------------AAC-------------------AA-TTCAA-ACGTTTT------GT--AA----TCATGC-TGG-A-TCA-AAAA-TAAATGTAGCT----AAAA--CACAAA-A-A-TA-CAGAA---GTT---A-G-TGG--TA-TTAA
gi|7 : atatttggatccaactcgt-TAAAACA-C-AAAAATACAGAAG-T-TAGT--GGT-ATTA-A-TGG-----------T-G----------CT------GTAAGC-TG---TTT-A-G--ACATTTTT-ATGG-----GT-A-AT-AATAAA----GA---AC-ATTGTTAC-A----AATTGAATTGGA-TTA-AACTACAGTT--------ATGAAG-A--TA-TGGAAA-AGCT---CT--TCGAATCATG----GAAAAGGAGG-AAATT-----G-ACA-ATA-T-----TT-GGTAAAT---CATG-TG---TAGTAAACTCT-TTGG--TTAT-ATCTAAA-CT-TA-TATAT-GTCGGGTCAATATTACCTTTA-CCA-GAC-GAAAATGAAAATATAATA-AAA-AAGG-TGAAAAGTAGCATT--TGTAATTT-TATATGG-GAT-AAACGCG-ATAGA-ATCAAACGTAATA-CGAT-AGT-T----TG--CAAT---G-TA--CATGTAG-G-G--GAC--GGCGGC----A--T-A---G-G-A-TT--AATC---AATTGAAAG-CCATAAAAG----CTTCGTGGA-----Ttggtgctgtaagctgtttagacatttttatgggtaataataaagaacattgttacaaattgaattggattaaactacagttatgaagatatggaaaagctcttcgaatcatggaaaaggaggaaattgacaatatttggtaaatcatgtgtagtaaactctttggttatatctaaacttatatatgtcgggtcaatattacctttaccagacgaaaatgaaaatataataaaaaaggtgaaaagtagcatttgtaattttatatgggataaacgcgatagaatcaaacgtaatacgatagtttgcaatgtacatgtaggggacggcggcataggattaatcaattgaaagccataaaagcttcgtggat
gi|8 : atatttggatccaactcgtttaaaagttgatgggaaaaaacatgcttgatgtcaagaggaataagacaagggtgtccaatttcggcgttatgatacatatttgttgcaaaaatattggccttaaaattaaaagatgatcaaattaaaggagttaatataaatatgttatcagaaattaaatatctctaacatgcggatgatttaacctcagccctgaaaaagcaattataacaattcaaacgttttgtaatcatgctggatcaaaaataaatgtagc-C-G--GTGTTTTT-ATTG-----GC-C-ATGA-TAAA----GA---ATTATGCT----ACAAAAAT--AATTGGA-T-A-AGATGTA--T--------ATCA-G-A--TA-TGGAAT-TTTT---TT--TCGAATCATG----GAAAACTAGA-ATTCT-----T-ACT-CT--T-----TTTGGGAAAT---GTTG-TA---TCGTGAACACA-CTTG--CAAT-ATCCAAA-CT-TG-TATAT-GTAGCATCTGTATTAAATTTA-ACGCGAC-A-AAAAGAA---ATAA-A-ACA-TATG-CGGACAATTATTTTGTTTTCATTT-C-TATGG-AAT-AAAAAAG-ATAGA-ATTAAAAGAAATA-CAAT-GAT-T----GGAACAAT---AGAA--CA---AG-G-T--GGT--ATTAAT----A--TTGT-TG-ACA-TTG-AATCT-AAACTAAAAG-CTATCAAAG----CTTCTTGGA-----TT---G--ATAAAA--TGCAAACCTG-TAA--AGGTA--AATTGAAATATTTTCTTGATTCTTTGTG
gi|9 : TTTAG-A--CTAAAAA-TA-ATATGC-T--G--T---G-T----CA-AA----A----CCTGTACA-AT-G--AGGC--GGGGCTATT-CGT-C--ATGGA-TGTC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGTACGTGATAAAAAATTTGAAGGACAAACTCCTCAGCAATCTTTTATTGCCAAGAAATTTTCAACGTAATACAGAGTAAATCTTCATGGATCCTTGATTATACACAAAAAAATCAGGTAAAATGTATGATTTGAAAAGTTTCTGAGTTTAATATTCACAATCATATTTAATAATCTTGTAGCTAAACAGAAATTTCACTTAGCAAATATTGGTATAGTGATATGAACGAAAAACTGTTTATCGTGTCAAAATAGTAAATAAATGAAAATAATGAGCATCTT
Unaligned ( gi|13 ): TACGTGATAAAAAATTGAGACACCTCCATCACCAATCTTTTACTTGCAAGAAATTTTCATATGCAGAGCTCAATCCTTTTCCATGGCCCTGATTTACACACAAAAAATCCAGTAAAATGTATGATAGAAAAGTTGCTGAATTTAATTTCAATTAATTTACCATAACTTGATAGCTAACCAGATATTTACATTAGCAAGTGAATAGTTGATATTGAACAAAAAACTGTTTATCCTTGCCCAAAGTAGTAATTGTAAATAATGAGCATTCTT
Unaligned ( gi|14 ): TATTACGTGATAAAAATTGAGACACTCATCACCAATCTTTTATTTCAAGAAATTTTCATATGCAGAGTAATCTTCCATGGCCCTTGATTTACACACAAAAAATCAGTAAAATGTATGATAGAAAAGTTGCTGAATTTAATTTCAAATTATTTAATAACTTGATAGCTAACAGATATTTACTTAGCAAGTGAAATAGTGATATTGAAAAAAAACTGTTTATCTTGCCAAAGTAGTAATGAAATAATGAGCATCT
Unaligned ( gi|20 ): TTTATAGGAATAAATGCAAGAATTATAGTAGATCTTTATGAATATTGCGAAGAAAATATTGCTGGTATTCTTTTATTTCTTGATTTTCAAAAA
Unaligned ( gi|22 ): TGTTAACTTCGCCTTTTTGTATACTAGATAGAGT
Alignments
lowQualScore : 1111111 222222222 1111 222 1 111 44444444444444444444 1111 111 11 22222 11 111 11 1 1 22222222 1 1 222222 111 1111 222222222222222 6666666666666666666666666666666666666 222 11 2222222222222222 1111 111111111 22222222222 1111 1 1111 1111111 33333333 111 111 111 11111 1111111 111 111 22222222222222222222222 1 1111 11111 111 111 22222 222 111 1 1 1 2222 1 11 11 11 111 6666666666666666666666666 1 11 11 1 333333 3333333333 11 11111111 22222222 333333 1 1 11 11 33333 11 222 22222222 111 111 2222 11 222 111 1 2222 111 1 11 1 11 1 2222 111 22222 1 11 11 1 11111 11 11111 111 11 11 11111
lowQualScore : 4 55 8 4 0000000 666 3 8888888 111111111 2 3 3 6666 55 44 3 3 5555 6 555 66 4 6666 4 3 222 4 4 88 4 2 0 66666666666666666666 5 5 5 5 5 888 66 5 2222 5 999 77 5 555 33 5 5 8888 00000 5 77777 77 99 77 5 5 000 5 8 5 55 1 0 1 99999999 1 5 5 1 77 777 5 0 1 333333 77 000 1 5 5 5 5 5 5 7777 77 0 99999 5 1 77 111111111111111 5 5 4 77 5 77 5 1 5 9999999999999999999999999999999999999 5 555 5 5 11 0 5 8888888888888888 0000 888 555555555 66 5 5 5 0 66666666666 5 4444 5 0 888 66 7777 5 4444444 5 22222222 5 000 5 000 6 99 6 6 6 6 6 9 3 6 77 1 6 111 7 6 6 6 6 22222 999 5 5 5 5 5 5 3333333 555 5 77 000 77777777777777777777777 5 5 5 1 5 888 5 6 2 7777 44444 111 99 99 6 99 99 6 444 44 00000 8 666 8 444 0 0 0 1111 0 99 3 33 3 33 666 9999999999999999999999999 0 33 33 8 0 000000 8 8 8888888888 0 11 33333333 8 22222222 8 4 2 777777 0 0 8 8 00 88 11 8 8 00000 11 111 77777777 444 0 8 8 8 444 5555 11 8 8 8 8 444 444 0 1111 111 3 0 33 5 3 33 2 3 0 1111 2 666 44444 0 33 33 0 55555 8 11 44444 8 8 8 8 1 666 99 8 11 3 5 0 55 8 8 44444 2
lowQualScore : . .. . . ....... ... . ....... ......... . . . .... .. .. . . .... . ... .. . .... . . ... . . .. . . . .................... . . . . . ... .. . .... . ... .. . ... .. . . .... ..... . ..... .. .. .. . . ... . . . .. . . . ........ . . . . .. ... . . . ...... .. ... . . . . . . . .... .. . ..... . . .. ............... . . . .. . .. . . . ..................................... . ... . . .. . . ................ .... ... ......... .. . . . . ........... . .... . . ... .. .... . ....... . ........ . ... . ... . .. . . . . . . . . .. . . ... . . . . . ..... ... . . . . . . ....... ... . .. ... ....................... . . . . . ... . . . .... ..... ... .. .. . .. .. . ... .. ..... . ... . ... . . . .... . .. . .. . .. ... ......................... . .. .. . . ...... . . .......... . .. ........ . ........ . . . ...... . . . . .. .. .. . . ..... .. ... ........ ... . . . . ... .... .. . . . . ... ... . .... ... . . .. . . .. . . . .... . ... ..... . .. .. . ..... . .. ..... . . . . . ... .. . .. . . . .. . . ..... .
lowQualScore : 4 55 3 0 8888888 444 6 6666666 555555555 0 6 6 7777 00 66 6 6 5555 7 777 11 4 2222 4 3 222 4 4 00 4 7 9 66666666666666666666 0 0 0 0 0 888 99 7 1111 7 666 99 7 111 66 7 7 0000 00000 7 77777 99 33 99 7 7 000 7 4 7 77 4 7 4 77777777 9 7 7 4 99 999 7 1 4 777777 99 000 7 7 7 7 7 7 7 9999 99 1 99999 7 4 11 444444444444444 7 7 3 11 7 99 7 7 7 1111111111111111111111111111111111111 7 777 0 0 99 1 0 1111111111111111 6666 888 999999999 99 0 0 0 1 00000000000 0 8888 0 0 888 99 9999 7 4444444 7 44444444 7 000 7 000 7 22 7 7 7 7 7 8 2 7 33 7 7 777 3 7 7 7 7 00000 666 7 7 7 7 7 7 1111111 777 7 99 000 66666666666666666666666 7 7 7 4 7 999 7 7 5 9999 33333 777 22 22 7 22 22 7 000 00 00000 0 000 0 000 0 0 0 2222 0 22 2 22 2 88 555 5555555555555555555555555 0 22 88 0 6 000000 0 0 0000000000 8 00 66666666 0 88888888 0 2 5 888888 0 0 0 0 88 88 00 0 0 00000 00 888 22222222 222 8 0 0 0 000 2222 00 0 0 0 0 444 000 0 2222 000 2 0 88 0 2 88 5 2 0 2222 5 222 55555 0 88 88 0 88888 0 00 00000 0 0 0 0 0 666 00 0 00 2 0 8 66 0 0 55555 5
consensus : TCTTTAG-A--TTAAAAAATA-ATG-GN-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GGGG-NATA-CGT-C--A-GGG-TGTCCCATTTCTTGCG--AT-GATA--TTTT-TG-TT---G-TA-A-TTGAAA-TTCTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-A-AAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-ATTAA-AAA-----------TTA----------G-----T------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATGTTTAC-ACAAAAAT--AACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGG-AATCT-----T-ACT-CT--T-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-GTAGCATCTATTTTAAATTTA-CCG-CGACAAAAA-GAA---ATAA-A-ACA-CATG-CGAAAAATTATTT--TTTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GGT--ATTAGT----AT-T-GT-CG-ATA-TTG-AAT--GT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACCTG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTG--G--TGT-GAAT-C-TTTA-CTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTAT-ACCATTGT--GCAA-TAA-A-------------TAC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAA----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCGCAATCCCTGTGGC----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GGC-A--TAAAAAG--TGG-GTTTTTTT---T----TATG--TTAAA-GAT-ATTGTT-GAT---GAAAATGG-C-TTTG--A-A-ATC-AAC-A-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GCGGAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-TA--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGAT--ATA--TTTTTAC-AGAAATCA--CTCTGTGGAAACCCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
Reference ( family-1218 ) : TCTTTAG-A--TTAAAAAATA-ATG-GN-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GGGG-NATA-CGT-C--A-GGG-TGTCCCATTTCTTGCG--AT-GATA--TTTT-TG-TT---G-TA-A-TTGAAA-TTCTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-A-AAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-ATTAA-AAA-----------TTA----------G-----T------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATGTTTAC-ACAAAAAT--AACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGG-AATCT-----T-ACT-CT--T-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-GTAGCATCTATTTTAAATTTA-CCG-CGACAAAAA-GAA---ATAA-A-ACA-CATG-CGAAAAATTATTT--TTTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GGT--ATTAGT----A--T-GT-TG-ATA-TTG-AAT--NT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACCTG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTG--G--TGT-GAAT-C-TTTA-CTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTAT-ACCATTGT--GCAA-TAA-A-------------TAC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAA----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCGCAATCCCTGTGGC----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GGC-A--TAAAAAG--TGG-GTTTTTTT---T----TATG--TTAAA-GAT-ATTGTT-GAT---GAAAATGG-C-TTTG--A-A-ATC-AAC-A-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GCGGAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-TA--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGAT--ATA--TTTTTAC-AGAAATCA--CTCTGTGGAAACCCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|1 : CTTGAG-ACATTAAAGAATA-ATG-GG-TCCGAGC---C-TTCAAC--AA----A----CATGTAAA-CT-G--AATC--GAGG-AATA-CGT-CCAG-GGG-TGTCCTATTTCTT-CG--AT-GATA--TTTT-TT-TT---GTTA-A-TTGAAA-TTTTAGCCATTCAGATTA-----CAGCTAACATGCT--AATAA-AGA-AATT-ACAGCGCG--GAT-T----TA-ACATCTT--CAAA-AGATCA-AAGAT--G-TCAAAG-A-GA--T-AT-----AAA-A-T---GTCC--AACA-AC--GCC-A---G-ATGATTGGTAC-TTTA--CCTTTGAAAGCATGAA-CAATCATATTTTTTAAAAACTCG-C-TC-GC--AA---AAA-ATCAACATCTTTCTAG---GT--GAACCGGTAT-CTTGGTATT-G-AAAC-TAAATGTTTCT----AAAAACCAG---A-TG-C-TACTT-CTT---GCGCTGG--TACTGAAACA-C-AAAAACATTAACA-C-TGTTCAGAT-ATAAA-AAATTAAATACATCTTA----------G-----T------ATCAAA-AC---TCT-C-GGCGTGTTTTTAATTGCCTCCATGC-AT-A--AAA----GA---ATTATGTTTA--ACAAAAAT--AACTGGA-T-A-ACATGCA--T--------ATCA-GCAACTA-TGGAAA-AACT---TT--TCGAATCCTGCCGCAAAAACTAGA-AATCT-----TCACT-CTC-T-----TT-GGAAAAG---CTTG-TA---TCGTGAACACTCCTTGCCCGATAATCTAAA-CTCTGCTATATCGTAGCATCTACTTTAAATTTACCCG-CGACAAAAA-GAA---ATAA-ACACAGCATG-CGCAAAAATAT----------------TGCGA-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-CGCGAGAAACAATAAAA-AA--CA---AGCGTCGGGCTAATTAGT----AT-T-GA-TG-ATATTTGCAAT--AT-AAACCATAAGACAATCAAAGCCTTCTTCTTGGAGACTGTA---GCAATAAAA--TACTAACCTGCTAA--AGGCGACAATTGAAGTATTTCCTTGATTCTTTG-ATAAGACACACAATTGCCG--CGTGGAATAC-TTTA-CTTATCTTACTAA---TATAAATG-AATT-GCAA----GTCTATC-CAAA-TATAACCA-TGT--GCAATTAA-ATTACCCTACTGTTTAC--C--A-AGA-TATATCTACTTTCCTTTAATGACATGTAAAA----TCTCAAT-CAA-GCC-C----AAAATATTATT--TCAAA-CTGCAAGCA---A--TTT-TTATCTCAACCCCTGTGGCTGCGAACAATA-AATTC-TTATCA-TATA-AAGGAAAGA-CAATTTGCTTTA-CA--GA-CT-GGC-AGTTAAAAA---TGG---TTTTTT---A----TATGGCTTAAA-GATCATTGTT-GAT---GAAAATGGCC-TTTG--A-ACATCAAAC-A-C-AAT-GTTCTGAAT-GCTTCTTAACATTTTACCTTTGCAA--GC-GAAATTGGTTATGTGTGAA-TAT-AATATGCATGAAATACGCTGTTTAAGAAATGTTAATTTGCTA--CGCCGAAGTA--TTGAA-CATGCCTCTAAAATTA--AAATTA-TG-TCAA-CGAAAGCCACCATAGGA---ATAATTTTTTAC-AGAAATCA--CT-TGTCGAAACCCACTGACATACAACGGTTGCCAGTTTTTT-TAT
gi|10 : aagttataggaatacaaatcgcaacgattattagtagcatatttacgatatattgcgaagaaaataatattgactggtattcttttttattcttgatttatcaaaaacgcattttgatcctgcttgagtggaatttactgcttcaaagcttcttaaatctatttaatctctcggaataatttataaacgtgggtaaatatactatatcaaagaacctatcTTTAG-A--CTAAAAAATA-ATA-AT-T--GGTT---G-T----CAAAA----A----CCTGTACA-AT-G--AGGC--GGGG-CATT-CGT-CA-A-GGA-TGTCcgcgctatatacgtttgattagaaaatttgcagacacctcatcaccaatcttttattgcaagaaatcatttcatcatacagcagtaaatcttcatggccttgataccacaaaaaatcagttaaaatgtcatgcacagaaaagctctgcctgaatcttaattcaaatattaataactttgctagcaaacagccatatcgtacttagcaaatgcgaatactcatattgaacaaaaaaaactgttctttgtactcttgtcaaaaagtgtagctaatgaaaataatgagcatct
gi|11 : atcagcctgcctatataaaagggcgatatattggtatgaatacatgtactagacttattgtcgatatttttgattgttgtgaaaataatgaagaggcaattttgcttttactcgattttcaaaaggcatttgatttcgtcgaatggtcttttatgataaaaacactcgagttctttaattttggacaagaattcattaaatggattcaaatcttatacaaaaatccagaaATCA-TATA-AAGGAAAGAC-AATTTGCTTTAACA--AAACT-GG--A--TAAAAAG--TTG-ATTTCTTG---T----AATG--T-AAA-GAT-ATTTTTAGAT---GAAACTGG---TTTGCAA-A-ATC-AGCCA-C-AATGATTC---ATCG----TTAA-A-TTTAGCTT-G-AATAGCGGAAA------A--T-TGCGTTAT-CAC----AT---ATA-------------AT----ATATG-TA--CG--GAA-TAAGT--GA-CATG--TCTAATC-AA--AAA-TA-TGCTCAAGTGAAAGCCACCATTGAATTTATA--TTTTTAC-AGAAATCA--CTTTGTGGAAACCCACTCA-ATATAA-G--T-----TTTTTTC
gi|15 : TTTTTAA-A--TTAAAAAATA-ATG-GG-T--GGAT---G-T----C--AA----AAA--CATGTAAA-AT-G--AGTC--GGGG-AATA-CGT-C--AGGGG-TGTCCCATTTC-TGCG--AT-GATA--TTTT-TGTTT---G-TA-A-TTGAAA-TTCTAGCTATTCAGATTA-----GA----------TGAAATAA-AGA-AA-T-A-AG---G--Gtctattggcgtata
gi|16 : ggaattttatgctcaaagttctaaaatcatataatttggtgataattttataaagtggataaatatactatataaagaacctaTTATTTAACGA-ATGTAAAAAAGAT-TC-CC-CAA----------AAAAT-T--TT--GC----CTG-AAC-C---G--CTTATTAAAGGAATCGATATGGTGT--AATAAGA-AATTC-ATGT---TAAA-AAACAAAG-CCAATATATTTT--CATTAA-TTTGGCTA--TACAAAG--TGG----TTTTTAGAT----TAT---TTAAATGAT-ATTGTA-AAT---GAAAATGG-T-ATT---A-A-ACC-TAC-A--GAATGGTTC---gata
gi|17 : TTCAG-G--ATGAAAAATA-ATG-GT-T--GGAT---A-T----C--AAGA--A----CCTGTAAA-AT-G--TCTC--GAGG-CATC-CGT-C--A-AGGATGTCCCATTTC-TGCT--AT-AATT--TTTT-TGTTT---G-TT-A-CTGAAA-TTCTCGCTATTCAGATAA-----G
gi|18 : tacacggaaccttta----CTTTTTGTA-----TATTAG--ATAAAA--TACTAACCTG-TAA--AGGGA--AGTTGAAGTATTTCCTTGATTTTATGTGTAG---ACAAA-TTG--G--TAT-GGAT---TTTA-CTTATCTTACTTA---T
gi|19 : atgttaacttcgc--TTTACTTTT-T-TATGG-AAT-AAAAAA--ATAGA-ATTAAACGAAACA-CATT-AATAC----GGAAT-AT---A-A----A---AG----------ATTGGT----G--TAGT-CG-ATA-TAG-AGT--CT-AAACT
gi|2 : gataTTTAG-A--TTAAAAAATA-ATG--C-T--GGAT---G-T----C--AATAAGA----CATGTAAA-AT-GTGAATT--CGGG-AATA-CGTTC--A-GGGGTGTCCCATTTCTC-----AT-GACA--TGTT-TG-TTAGTG-TAGA-TTGAAAATTCTAGCTATTTAGATTAAGATGGA---------C---AATAACAGA-AA-T-A-AG---GTGGAT-TGGTATG-ATT--TT--CAAA--GAT-A-GAGAT--GATCAAACCATGA--T-ATCCCTTAAA-A-TATAGTCCCTAGCTTAC--G-C-ATGGG-ATGATTTGTACATTTAAACCTT-GAGAG-ATGAGTCTATCAT-GT-----GTAACTTGAC-TCATCCGAAA-CGAA-ATCAATATCTTTCC-A---ATTAAA---GGT-T-C-TGGTA-T-GGAAACATAAATGTTTCTTTTAAAAA--C-G-A-T-TGACATACTT-CTT---TTG-TGA--CT-TGAAACA-T-CAAAACTTTAACA-CTTTTT--GAT-ATTAAGAAA-----------TTAATACATCTGTG-----T------ATCAAA-AAAGCTCT-CAG--GTG-TTTT-ATGA-----G----------AAATCCTGATTCATTATGT-----ACAAAAA---AAATGGA-T-ATAGATGTAG-TGTTATGGAATCA-GAA--TATTGGAAACAACTATATTAGTCGAAATCAGT---GAAAACTAGA-AAACTGCATCT-ACT-CT--TTGTGGTT-GGAGTATTAAATTG-TAAATTCGTGAACAC
gi|21 : ttcatataattaaagccaatgaaaaatattcttctgtttttgtgacaattcttaatgacgaagtgatatacttgataaacatgtatgcgttttaccagaaattatatacgttctccataatgtagagactcgaaattacagatgcttacttattcaatattagatttggagacaaaaatctatatcatgactgataaatcttttcttagatctccactcacaatgaaagaaagtcgttgtgcctttgtttcaaaatcatgaaattagaggtaagaaaggtgccttgggttaacggtctatcccctcactgaacgttttagagacatttggcgagaaactcaaacaatacttttttttcttctgttgataagcatccttgataccgaagaaatccgtgtttaacatttacacaaagtattaagctgtttactaaatacataaaatggaagggtgaaaaatacctcccttggtacatgataactattaggtacccatagagtcttacaaacacaaggactaataaaatcattgggcttttacgttggcgaagaggctacaaaaaataatagattaagtttaatagcaatattatgatcagtcaagctatcagctaattaaaggcataatgcgtctattcaataggaataaaatcaagaaatctatcttatagtggcatattcttggttgtgaataaattgcgaaggaaatcgataactacttgatgggtgatttgcttcttatttcttcgatttcagagagaagcatttttaagatgatcatattgcatattggatattttaatgtttaatcataggagtctaaaagaatcatttttaatatttgggtgatgaaaaaatctttataggaagtaatggagtataaaaaactatacatatatagtaagatacctattct--GA-CAT----CGAAAA-TACAAAA-TA-TG-TCAA-TGAAAGCCA-CATCAGAG--ATA--TTTGTAC-AGAAATCA----CTGTGAA---CCACTGA-ATACAA-G--T
gi|3 : TTAG-A--TTAAAAAATATATG-GGCT--GGAT---GAT----C--AA----AAAAACATGTAAA-ATTG--AATC--GAGG-TATA-CGT-C--A-GGG-TGTCATATTTCGGTCG--ATTGA-A--TTTTGTT-TT---G-TA-AATTGAAT-TTTTGGCCATTCA-ATTA-----AG---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-ACAAGAT--G-TCAAAG-ATGA--TTAT-----AAA-AAT-TAGTCC--AACC-ACCGG-C-A---GGATGATT-GTAC-TTTA--CCTTTGAAAGCATGAAACTATCAT-T------AAAACTCG-CCTC-TC--AAAAGAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCTT---AAAA--CAGGA-A-TG-CATACTTTCTTTCCG-G-TGGGTTA-TGAAACA-CCAAAAACATTAACA-C-TTTT--GATAATTAA-AAA-----------TT-----------G-----T------ATCAAA-AG---TCTCC-G--GTTGTTTT-ATTG-----GT-CAAT-A-TAAA----GA---ATTATTTTTAC-A-AAAAAT---ACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGAAAACAACT---TT--TCGAATCCTG----GAAAACTAGGAAATCT-----T-ACT-CTTCT-----TT-GGAAAAT---GTTGTTA---TCGTGACCACT-CTTG--CGAT-ATCTAAA-C--TG-AAC----TAGC-TCTATTTTAA--TTA-CCACCGAC-AAAA-GAA---AT-A-A-ACA-CATGCCGAAAAATTA--T--TTTTCATTTCC-TATGGAAATAAGAAAAGCACAGACATTAAAAGAAATACCAATGGAT-C-----GAACAATA--A-AA--CA---A--GT--GGG--A-TAGT----ATGT-GT-TGCATACTTG-AAT--GT-AAACTAAAAG-CAATCAAAGC---CTTCTT-GA-----TA---G--ATAAAAATCACCAACCTG-TAATCAGGTA--AATTGAAG-ATTTCCTT-ATTCTTGGTGTAG---ACAAAGTTG--GT-TGT-GAAT-CTTTTA-CTTATCTTACTTATATTACAAATG-AATT-G-AACGTGGC-TATCAAAAATCAT-ACCATTGTTCGC-A-TAA-A-------------TAC--CAAG-AGA-TA--TTTA--TTTCTTTAATGA-ATGT-TAA----T-TC-AT-CAA-G-TCC----AAAATAT--TG--CC-AATCTG-CAG-A---ACTTTT-TTATCACAAT-CCTGTGGC----AACAATACAATTCATTATCACTATACAAGGAAAGA-CAATTTGCTTTA-CA--GA-CT-GG--A--TAAAAAGGTTGGCGTTTTCTT---TTATCTATG--TTAAA-GAT-ATTGTT-GATAAAAAAAATGG-CTTTTG--ACA-ATC-AAC-ACCAAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GC-GAAATTGGTTA--TGTGAATTATAAAT----ATGAAATA--CTGTTTAAGAACT-----TATG-TAACCG--GAA-TA--T--GACCATG--TCTAAAA-GA--ACA-TATTG-TCAA-CGAAAGCCACCATAGGAT--ATAC-TTTTTAC-AGAAAACAACCTCTGTGGAAACCACCTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|4 : TTTTTAGGA--TTAAAAA-TA-ATG-GT-G--GGATTCTG-T----C--AA----A----C-T-TAAATAT-G--A-TC--GGG--AATAACGT-C--A-GGG--GTTCCATTTCT-GCG--AT-GCGA--CTTT-TGTTT---G-TA-A--TGAAA-TCCATGCTATTAAG-TTA-----GA---------GTG-AATAA-AAAGAA-T-A-A----G--GAT-T----AG-AT---TT--CAAAGAGAT-A-GAGATTGG-TCAAAG-ATGAGGT-AT-----GAA-A-A-TAGTTC--AGC--AC--G-CAA---G-AT-ATCTGTAT-CTTAATCACTTGAAA--AT--A-GTATCAT-TG-----ATAA-TTG-C-TCTTC--GAA-GAAATACAAA-ATCTTTC--AAACAT--AA---GGTTT-C-T-GTA-T-G-AAAC-T-AATTTTTC-----AAAA--CGG-ACATTG-CATACT---CT---G-G-TGA--CA-TG-AACATC-AAGAA-ACTAAT--C-CTTT--GAT-A-TAA-AAA-----------TTA----------GAGAGCTATGTGAATCAAA-AAC--TCT-C-G--GTATTT-------------------------A----CA---ATTA-----ACTACAAAAAT--AATTGCATT-A-AGATGTAT-T--------ATCA-T-ATTTA-TGGAAA-AACT---TT--TCGActata
gi|5 : ggagcctgtacgaatgaattaaaacacgcggatgtataacgttcggttttgggatcaaaataatgggacggataacatgatactttggataacgtatgcgttttaccagaaaattaatatagtccaccaaatgtaggaagactccggaaattacaggatgtgtctcactatagggagtattagatggtaaaaaaggaatatgatcgtatcatatattgacacctaatgattctttccacatcagagagtgggaagaagtcgttgtgctttgttcacagaactgtaataagagtcctgggttagacggtctcccctctgaagttcttatcgagacattttgggagaaaactcaagccataactgtttttttgcttctattgataagtgcatttgaagaatgaaatgtttaaacatttttacaataagattagcctgtttttatcttactatctagatagagaggtagagtgaatatccagagagtccggtcgtgaatggaaattaagagatagacctgcattaaatcttactctaaaatcacagactgattaaaaatcatatggctttaccactttgggcgaagaggacaaaaaatagaaagttcatagcaaatgatattcactgtatagatttatatggtaaatcaatcaagaatatagtgggcgagtatctcttgggaacacttagcacacaaaacagaatccattttggctcacttcgtcacagaggagcgctaatgttggatctctaatgaaataagttttatgtgatataatatagatgcatatctaactttagcgtaaagaggtggttgtgagtaaatgataaatatagctaatatgtaaagaactaTCTTTAG-A--TTAAAAA-TA-ATG-GG-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GAGG-TATA-CGT-C--A-GGG-TGTCATATTTCTTTCG--AT-GAT---TTTT-TG-TT---G-TA-A-TTG-AA-TTTTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-ATAAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-AATAA-AAA-----------TTG-----------------------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATATTTAC-ATAAAAAT--AACTGGA-T-A-AGA-GCA--T--------ATCA-G-A--TA-TGGAAA-AATT---GT--TCGAATCCTG----GAAAACTA-G-AATCT-----T-ACT-CT--C-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-TTAGCATCTATTTTAAATTTA-CCA-CG--AAAAA-GAA---AT-A-A-ACA-CATG-CGAAAAATTATTT--TTTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GAT--ATTAGT----A--T-GT-TG-ATA-TTG-AAT--GT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAA-CTG-TAA--AGGTA--AATTGAAGTATTTCCTT-ATTCTTTGTGTAG---ACAAAGTTG--GGTTGT-GAAT-C-TTTACCTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTA--ACCATTGT--GCAA-TAA-A--------------AC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGT-AAA----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCACAATCCCTGTG------AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GG--A--TAAAAAG--TGG-GTTTTTTT---T----TATA--TTAAA-GAT-ATTGTT-GAT---AAAAATGG-C--TTG--A-A-ATC-AAC-A-CAAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GCGAAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-TG--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGAT--ATA--TTTTTACAAGAAACAA--CTCTGT-GAAACC--CTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|6 : GAT---G-T----C--AA----AAA--CATGTAAA-AT-G--AATC--GAGG-TATA-CGT-C--AGGGG-TGTCta
gi|6 : G-TGTCATATTTCTT-CG--AT-GATA--TTTT-TG-TTT--G-TA-A-TT-AAA-TT-TGGCACTTCAGATTA-----AG---------CTT-AATAA-AGA-AA-T-A-AG---G---ATAT----TATACA--TTTTCAAA-AGAT-A-AAGATT-G-TCAATG-ATGA--T-ATT----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATT-GTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-T------AAAACTCG-C-TC-TC--AAA-GAAT-A-CAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-A--C-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--T--TAACAC--C-AAAAACATTAACAAC-TTTT--GAT-ATACA-AAA-----------TT-----------G-----T------ATCAAACAG---TCT-C-GT-GTGTTTTT-ATTG-----GT-C-ATGA-TAAA----GA----TTATGTT-AC-A-AAAAAT--AACTGGA-T-A-AGAGGCA--T--------ATCA-G-A---A-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGA-AATCT-----T-ACTTCTC-T-----TT-GGAAAAT---GTTG-TA---TAGTGAACACT-CTTG--CGAT-ATCTAAAACT-TG-TATAT-G-AGC-TCTATTTTAAATTTA-CCA-CGACAAAA--GAA---ATAA-A-ACA-CATG-CGAAAAATTATTT--TTTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATT-AAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AAACCA---AG-GT--GGTA-AATAGTTATAA--T-GTGTG-ATG--TG-AAT--GTAAAACTAA----CAAT----------TCTTTGGA-----TA---G--ATGAAA--TACCAACCTG-T-A--AGGTA--AATTGAAGTTATTCCTTGATTCTTTGTGTAG---ACAAAG-TG--G--TGT-GAAT---TTTA-CTTATCTTACTTA---TACAAATGTAATTAG-AA----GT-TATC--AAATTAT-ACCATTGT--GC-A-TAACA-------------CACAAT--GAAGATTAT-TTAT--TTTCTTTAATGA-AAGTAAAAGT--C-TC-ATGCAATG-T-TACTAAAAATAT--TTTAGC-AA-CTG-AAG-AGATA--TTT-TTannnnnnnnnnnnnnnnnnnnnnnnngtgtcatatttcttcgatgatatttttgtttgtaattaaatttggcacttcagattaagcttaataaagaaataaggatattatacattttcaaaagataaagattgtcaatgatgatattaaaattagtccaacacgcagatgattgtactttacctttgaaagatgaactatcattaaaactcgctctcaaagaatacaaatctttcagtaaggtatctggtatgactaaatgtttctaaaacagaatgcatacttcttggtggttaacaccaaaaacattaacaacttttgatatacaaaattgtatcaaacagtctcgtgtgtttttattggtcatgataaagattatgttacaaaaaataactggataagaggcatatcagaatggaaaaacttttcgaatcctggaaaactagaaatcttacttctctttggaaaatgttgtatagtgaacactcttgcgatatctaaaacttgtatatgagctctattttaaatttaccacgacaaaagaaataaaacacatgcgaaaaattatttttttcatttctatggaatagaaaagacagaattaaagaaatacaatgatcggaacaataaaaccaaggtggtaaatagttataatgtgtgatgtgaatgtaaaactaacaattctttggatagatgaaataccaacctgtaaggtaaattgaagttattccttgattctttgtgtagacaaagtggtgtgaattttacttatcttacttatacaaatgtaattagaagttatcaaattataccattgtgcataacacacaatgaagattatttattttctttaatgaaagtaaaagtctcatgcaatgttactaaaaatattttagcaactgaagagatattttt
gi|7 : gatgtcaaaaacatgtaaaatgaatcgaggtatacgtcaggggtgtcannnnnnnnnnnnnnnnnnnnnnnnn--TTAAAAGTTG-ATG-G-----GAA-----------A--AA----A----CATGCTTG-AT-G----TCAAGAGG-AATA-AGA-C--AAGGG-TGTCCAATTTCG-GCGTTAT-GATACATATT-TG-TT---G-CA-A----AAA-TATTGGCC-TTAAAATTA-----AA---------A---GATGA-TCA-AA-TTA-AA---G--GAG-T----TA-ATA--T-----AA-ATAT-----GTT--A-TCAGAA-AT-------T-----AAATA-T-C--TCT--AAC--AT--G-C-G---G-ATGATTTA-AC-CTCA--GCCCTGAAAA-AGCAA-TTAT-------------AAC-------------------AA-TTCAA-ACGTTTT------GT--AA---T-CATGC-TGG-A-TCA-AAAA-TAAATGTAGCT----AAAA--CAC-A-A--------------------------------AAATA-C-AGAAG--TTAG--------T--GGT-ATTAA----------------TG----------G-----T------GCTGTA-AGCTGTTT-A-G--ACATTTTT-ATGG-----GT-A-AT-AATAAA----GA---AC-ATTGTTAC-A----AATTGAATTGGA-TTA-AACTACAGTT--------ATGAAG-A--TA-TGGAAA-AGCT---CT--TCGAATCATG----GAAAAGGAGG-AAATT-----G-ACA-ATA-T-----TT-GGTAAAT---CATG-TG---TAGTAAACTCT-TTGG--TTAT-ATCTAAA-CT-TA-TATAT-GTCGGGTCAATATTACCTTTA-CCA--GACGAAAATGAAAATATAATA-AAA-AAGG-TGAAAAGTAGCAT--TTGTAATTT-TATATGG-GAT-AAACGCG-ATAGA-ATCAAACGTAATA-CGAT-AGT-T----TG--CAAT---G-TA--CATGTAG-G---GG-------------A--C-GG-CG-GCA-TAG-GATTAAT-CAATTGAAAG-CCATAAAAG----CTTCGTGGA-----T
gi|8 : atatttggatccaactcgt-C-G--GTGTTTTT-ATTG-----GC-C-ATGA-TAAA----GA---ATTATGCT----ACAAAAAT--AATTGGA-T-A-AGATGTA--T--------ATCA-G-A--TA-TGGAAT-TTTT---TT--TCGAATCATG----GAAAACTAGA-ATTCT-----T-ACT-CT--T-----TTTGGGAAAT---GTTG-TA---TCGTGAACACA-CTTG--CAAT-ATCCAAA-CT-TG-TATAT-GTAGCATCTGTATTAAATTTA-ACG-CGACAAAAA-GAA---ATAA-A-ACA-TATG-CGGACAATTATTTTGTTTTCATTT-C-TATGG-AAT-AAAAAAG-ATAGA-ATTAAAAGAAATA-CAAT-GAT-T----GGAACAAT---AGAA--CA---AG-GT--GGT--ATTAAT----AT-T-GT-TG-ACA-TTG-AAT--CT-AAACTAAAAG-CTATCAAAG----CTTCTTGGA-----TT---G--ATAAAA--TGCAAACCTG-TAA--AGGTA--AATTGAAATATTTTCTTGATTCTTTGTG
gi|9 : TTTAG-A--CTAAAAA-TA-ATATGC-T--G--T---G-T----CA-AA----A----CCTGTACA-AT-G--AGGC--GGGGCTATT-CGT-C--ATGGA-TGTC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGTACGTGATAAAAAATTTGAAGGACAAACTCCTCAGCAATCTTTTATTGCCAAGAAATTTTCAACGTAATACAGAGTAAATCTTCATGGATCCTTGATTATACACAAAAAAATCAGGTAAAATGTATGATTTGAAAAGTTTCTGAGTTTAATATTCACAATCATATTTAATAATCTTGTAGCTAAACAGAAATTTCACTTAGCAAATATTGGTATAGTGATATGAACGAAAAACTGTTTATCGTGTCAAAATAGTAAATAAATGAAAATAATGAGCATCTT
Unaligned ( gi|13 ): TACGTGATAAAAAATTGAGACACCTCCATCACCAATCTTTTACTTGCAAGAAATTTTCATATGCAGAGCTCAATCCTTTTCCATGGCCCTGATTTACACACAAAAAATCCAGTAAAATGTATGATAGAAAAGTTGCTGAATTTAATTTCAATTAATTTACCATAACTTGATAGCTAACCAGATATTTACATTAGCAAGTGAATAGTTGATATTGAACAAAAAACTGTTTATCCTTGCCCAAAGTAGTAATTGTAAATAATGAGCATTCTT
Unaligned ( gi|14 ): TATTACGTGATAAAAATTGAGACACTCATCACCAATCTTTTATTTCAAGAAATTTTCATATGCAGAGTAATCTTCCATGGCCCTTGATTTACACACAAAAAATCAGTAAAATGTATGATAGAAAAGTTGCTGAATTTAATTTCAAATTATTTAATAACTTGATAGCTAACAGATATTTACTTAGCAAGTGAAATAGTGATATTGAAAAAAAACTGTTTATCTTGCCAAAGTAGTAATGAAATAATGAGCATCT
Unaligned ( gi|20 ): TTTATAGGAATAAATGCAAGAATTATAGTAGATCTTTATGAATATTGCGAAGAAAATATTGCTGGTATTCTTTTATTTCTTGATTTTCAAAAA
Unaligned ( gi|22 ): TGTTAACTTCGCCTTTTTGTATACTAGATAGAGT
Alignments
lowQualScore : 1111111 222222222 1111 222 1 111 44444444444444444444 1111 111 11 22222 11 111 11 1 1 22222222 1 1 222222 111 1111 222222222222222 6666666666666666666666666666666666666 222 11 2222222222222222 1111 111111111 22222222222 1111 1 1111 1111111 33333333 111 111 111 1111111 111 111 11111111111111111 111 1 1111 11111 111 111 22222 222 111 1 1 1 2222 1 11 11 11 111 6666666666666666666666666 1 11 11 1 333333 3333333333 11 11111111 22222222 333333 1 1 11 11 33333 11 222 22222222 111 111 2222 11 222 111 1 2222 111 1 11 1 11 1 2222 111 22222 1 11 11 1 11111 11 11111 111 11 11 11111
lowQualScore : 4 55 8 4 0000000 666 3 8888888 111111111 2 3 3 6666 55 44 3 3 5555 6 555 66 4 6666 4 3 222 4 4 88 4 2 0 66666666666666666666 5 5 5 5 5 888 66 5 2222 5 999 77 5 555 33 5 5 8888 00000 5 77777 77 99 77 5 5 000 5 8 5 55 1 0 1 99999999 1 5 5 1 77 777 5 0 1 333333 77 000 1 5 5 5 5 5 5 7777 77 0 99999 5 1 77 111111111111111 5 5 4 77 5 77 5 1 5 9999999999999999999999999999999999999 5 555 5 5 11 0 5 8888888888888888 0000 888 555555555 66 5 5 5 0 66666666666 5 4444 5 0 888 66 7777 5 4444444 5 22222222 5 000 5 000 6 99 6 6 6 6 6 9 3 6 77 1 6 111 7 6 6 6 6 99 77 999 5 5 5 5 5 5 3333333 555 5 77 000 99999999999999999 77 222 5 1 5 0 3 5 6 2 7777 44444 111 99 99 6 99 99 6 444 44 00000 8 666 8 444 0 0 0 1111 0 99 3 33 3 33 666 9999999999999999999999999 0 33 33 8 0 000000 8 8 8888888888 0 11 33333333 8 22222222 8 4 2 777777 0 0 8 8 00 88 11 8 8 00000 11 111 77777777 444 0 8 8 8 444 5555 11 8 8 8 8 444 444 0 1111 111 3 0 33 5 3 33 2 3 0 1111 2 666 44444 0 33 33 0 55555 8 11 44444 8 8 8 8 1 666 99 8 11 3 5 0 55 8 8 44444 2
lowQualScore : . .. . . ....... ... . ....... ......... . . . .... .. .. . . .... . ... .. . .... . . ... . . .. . . . .................... . . . . . ... .. . .... . ... .. . ... .. . . .... ..... . ..... .. .. .. . . ... . . . .. . . . ........ . . . . .. ... . . . ...... .. ... . . . . . . . .... .. . ..... . . .. ............... . . . .. . .. . . . ..................................... . ... . . .. . . ................ .... ... ......... .. . . . . ........... . .... . . ... .. .... . ....... . ........ . ... . ... . .. . . . . . . . . .. . . ... . . . . . .. .. ... . . . . . . ....... ... . .. ... ................. .. ... . . . . . . . . .... ..... ... .. .. . .. .. . ... .. ..... . ... . ... . . . .... . .. . .. . .. ... ......................... . .. .. . . ...... . . .......... . .. ........ . ........ . . . ...... . . . . .. .. .. . . ..... .. ... ........ ... . . . . ... .... .. . . . . ... ... . .... ... . . .. . . .. . . . .... . ... ..... . .. .. . ..... . .. ..... . . . . . ... .. . .. . . . .. . . ..... .
lowQualScore : 4 55 3 0 8888888 444 6 6666666 555555555 0 6 6 7777 00 66 6 6 5555 7 777 11 4 2222 4 3 222 4 4 00 4 7 9 66666666666666666666 0 0 0 0 0 888 99 7 1111 7 666 99 7 111 66 7 7 0000 00000 7 77777 99 33 99 7 7 000 7 4 7 77 4 7 4 77777777 9 7 7 4 99 999 7 1 4 777777 99 000 7 7 7 7 7 7 7 9999 99 1 99999 7 4 11 444444444444444 7 7 3 11 7 99 7 7 7 1111111111111111111111111111111111111 7 777 0 0 99 1 0 1111111111111111 6666 888 999999999 99 0 0 0 1 00000000000 0 8888 0 0 888 99 9999 7 4444444 7 44444444 7 000 7 000 7 22 7 7 7 7 7 8 2 7 33 7 7 777 3 7 7 7 7 22 99 666 7 7 7 7 7 7 1111111 777 7 99 000 11111111111111111 44 444 7 4 7 1 0 7 7 5 9999 33333 777 22 22 7 22 22 7 000 00 00000 0 000 0 000 0 0 0 2222 0 22 2 22 2 88 555 5555555555555555555555555 0 22 88 0 6 000000 0 0 0000000000 8 00 66666666 0 88888888 0 2 5 888888 0 0 0 0 88 88 00 0 0 00000 00 888 22222222 222 8 0 0 0 000 2222 00 0 0 0 0 444 000 0 2222 000 2 0 88 0 2 88 5 2 0 2222 5 222 55555 0 88 88 0 88888 0 00 00000 0 0 0 0 0 666 00 0 00 2 0 8 66 0 0 55555 5
consensus : TCTTTAG-A--TTAAAAAATA-ATG-GN-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GGGG-NATA-CGT-C--A-GGG-TGTCCCATTTCTTGCG--AT-GATA--TTTT-TG-TT---G-TA-A-TTGAAA-TTCTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-A-AAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-ATTAA-AAA-----------TTA----------G-----T------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATGTTTAC-ACAAAAAT--AACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGG-AATCT-----T-ACT-CT--T-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-GTAGCATCTATTTTAAATTTA-CCG-CGACAAAAA-GAA---ATAA-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GGT--A-----TTAGTAT-TGT-TG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACCTG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTG--G--TGT-GAAT-C-TTTA-CTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTAT-ACCATTGT--GCAA-TAA-A-------------TAC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAA----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCGCAATCCCTGTGGC----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GGC-A--TAAAAAG--TGG-GTTTTTTT---T----TATG--TTAAA-GAT-ATTGTT-GAT---GAAAATGG-C-TTTG--A-A-ATC-AAC-A-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GCGGAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-TA--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGAT--ATA--TTTTTAC-AGAAATCA--CTCTGTGGAAACCCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
Reference ( family-1218 ) : TCTTTAG-A--TTAAAAAATA-ATG-GN-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GGGG-NATA-CGT-C--A-GGG-TGTCCCATTTCTTGCG--AT-GATA--TTTT-TG-TT---G-TA-A-TTGAAA-TTCTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-A-AAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-ATTAA-AAA-----------TTA----------G-----T------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATGTTTAC-ACAAAAAT--AACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGG-AATCT-----T-ACT-CT--T-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-GTAGCATCTATTTTAAATTTA-CCG-CGACAAAAA-GAA---ATAA-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GGT--A-----TTAGTAT-TGT-CG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACCTG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTG--G--TGT-GAAT-C-TTTA-CTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTAT-ACCATTGT--GCAA-TAA-A-------------TAC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAA----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCGCAATCCCTGTGGC----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GGC-A--TAAAAAG--TGG-GTTTTTTT---T----TATG--TTAAA-GAT-ATTGTT-GAT---GAAAATGG-C-TTTG--A-A-ATC-AAC-A-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GCGGAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-TA--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGAT--ATA--TTTTTAC-AGAAATCA--CTCTGTGGAAACCCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|1 : CTTGAG-ACATTAAAGAATA-ATG-GG-TCCGAGC---C-TTCAAC--AA----A----CATGTAAA-CT-G--AATC--GAGG-AATA-CGT-CCAG-GGG-TGTCCTATTTCTT-CG--AT-GATA--TTTT-TT-TT---GTTA-A-TTGAAA-TTTTAGCCATTCAGATTA-----CAGCTAACATGCT--AATAA-AGA-AATT-ACAGCGCG--GAT-T----TA-ACATCTT--CAAA-AGATCA-AAGAT--G-TCAAAG-A-GA--T-AT-----AAA-A-T---GTCC--AACA-AC--GCC-A---G-ATGATTGGTAC-TTTA--CCTTTGAAAGCATGAA-CAATCATATTTTTTAAAAACTCG-C-TC-GC--AA---AAA-ATCAACATCTTTCTAG---GT--GAACCGGTAT-CTTGGTATT-G-AAAC-TAAATGTTTCT----AAAAACCAG---A-TG-C-TACTT-CTT---GCGCTGG--TACTGAAACA-C-AAAAACATTAACA-C-TGTTCAGAT-ATAAA-AAATTAAATACATCTTA----------G-----T------ATCAAA-AC---TCT-C-GGCGTGTTTTTAATTGCCTCCATGC-AT-A--AAA----GA---ATTATGTTTA--ACAAAAAT--AACTGGA-T-A-ACATGCA--T--------ATCA-GCAACTA-TGGAAA-AACT---TT--TCGAATCCTGCCGCAAAAACTAGA-AATCT-----TCACT-CTC-T-----TT-GGAAAAG---CTTG-TA---TCGTGAACACTCCTTGCCCGATAATCTAAA-CTCTGCTATATCGTAGCATCTACTTTAAATTTACCCG-CGACAAAAA-GAA---ATAA-ACACAGCATG-CGCAAAAATAT----------------TGCGA-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-CGCGAGAAACAATAAAA-AA--CA---AGCGTCGGGCTAA-----TTAGTAT-TGA-TG-ATATTTGCAATAT-AAACCATAAGACAATCAAAGCCTTCTTCTTGGAGACTGTA---GCAATAAAA--TACTAACCTGCTAA--AGGCGACAATTGAAGTATTTCCTTGATTCTTTG-ATAAGACACACAATTGCCG--CGTGGAATAC-TTTA-CTTATCTTACTAA---TATAAATG-AATT-GCAA----GTCTATC-CAAA-TATAACCA-TGT--GCAATTAA-ATTACCCTACTGTTTAC--C--A-AGA-TATATCTACTTTCCTTTAATGACATGTAAAA----TCTCAAT-CAA-GCC-C----AAAATATTATT--TCAAA-CTGCAAGCA---A--TTT-TTATCTCAACCCCTGTGGCTGCGAACAATA-AATTC-TTATCA-TATA-AAGGAAAGA-CAATTTGCTTTA-CA--GA-CT-GGC-AGTTAAAAA---TGG---TTTTTT---A----TATGGCTTAAA-GATCATTGTT-GAT---GAAAATGGCC-TTTG--A-ACATCAAAC-A-C-AAT-GTTCTGAAT-GCTTCTTAACATTTTACCTTTGCAA--GC-GAAATTGGTTATGTGTGAA-TAT-AATATGCATGAAATACGCTGTTTAAGAAATGTTAATTTGCTA--CGCCGAAGTA--TTGAA-CATGCCTCTAAAATTA--AAATTA-TG-TCAA-CGAAAGCCACCATAGGA---ATAATTTTTTAC-AGAAATCA--CT-TGTCGAAACCCACTGACATACAACGGTTGCCAGTTTTTT-TAT
gi|10 : aagttataggaatacaaatcgcaacgattattagtagcatatttacgatatattgcgaagaaaataatattgactggtattcttttttattcttgatttatcaaaaacgcattttgatcctgcttgagtggaatttactgcttcaaagcttcttaaatctatttaatctctcggaataatttataaacgtgggtaaatatactatatcaaagaacctatcTTTAG-A--CTAAAAAATA-ATA-AT-T--GGTT---G-T----CAAAA----A----CCTGTACA-AT-G--AGGC--GGGG-CATT-CGT-CA-A-GGA-TGTCcgcgctatatacgtttgattagaaaatttgcagacacctcatcaccaatcttttattgcaagaaatcatttcatcatacagcagtaaatcttcatggccttgataccacaaaaaatcagttaaaatgtcatgcacagaaaagctctgcctgaatcttaattcaaatattaataactttgctagcaaacagccatatcgtacttagcaaatgcgaatactcatattgaacaaaaaaaactgttctttgtactcttgtcaaaaagtgtagctaatgaaaataatgagcatct
gi|11 : atcagcctgcctatataaaagggcgatatattggtatgaatacatgtactagacttattgtcgatatttttgattgttgtgaaaataatgaagaggcaattttgcttttactcgattttcaaaaggcatttgatttcgtcgaatggtcttttatgataaaaacactcgagttctttaattttggacaagaattcattaaatggattcaaatcttatacaaaaatccagaaATCA-TATA-AAGGAAAGAC-AATTTGCTTTAACA--AAACT-GG--A--TAAAAAG--TTG-ATTTCTTG---T----AATG--T-AAA-GAT-ATTTTTAGAT---GAAACTGG---TTTGCAA-A-ATC-AGCCA-C-AATGATTC---ATCG----TTAA-A-TTTAGCTT-G-AATAGCGGAAA------A--T-TGCGTTAT-CAC----AT---ATA-------------AT----ATATG-TA--CG--GAA-TAAGT--GA-CATG--TCTAATC-AA--AAA-TA-TGCTCAAGTGAAAGCCACCATTGAATTTATA--TTTTTAC-AGAAATCA--CTTTGTGGAAACCCACTCA-ATATAA-G--T-----TTTTTTC
gi|15 : TTTTTAA-A--TTAAAAAATA-ATG-GG-T--GGAT---G-T----C--AA----AAA--CATGTAAA-AT-G--AGTC--GGGG-AATA-CGT-C--AGGGG-TGTCCCATTTC-TGCG--AT-GATA--TTTT-TGTTT---G-TA-A-TTGAAA-TTCTAGCTATTCAGATTA-----GA----------TGAAATAA-AGA-AA-T-A-AG---G--Gtctattggcgtata
gi|16 : ggaattttatgctcaaagttctaaaatcatataatttggtgataattttataaagtggataaatatactatataaagaacctaTTATTTAACGA-ATGTAAAAAAGAT-TC-CC-CAA----------AAAAT-T--TT--GC----CTG-AAC-C---G--CTTATTAAAGGAATCGATATGGTGT--AATAAGA-AATTC-ATGT---TAAA-AAACAAAG-CCAATATATTTT--CATTAA-TTTGGCTA--TACAAAG--TGG----TTTTTAGAT----TAT---TTAAATGAT-ATTGTA-AAT---GAAAATGG-T-ATT---A-A-ACC-TAC-A--GAATGGTTC---gata
gi|17 : TTCAG-G--ATGAAAAATA-ATG-GT-T--GGAT---A-T----C--AAGA--A----CCTGTAAA-AT-G--TCTC--GAGG-CATC-CGT-C--A-AGGATGTCCCATTTC-TGCT--AT-AATT--TTTT-TGTTT---G-TT-A-CTGAAA-TTCTCGCTATTCAGATAA-----G
gi|18 : tacacggaaccttta----CTTTTTGTA-----TATTAG--ATAAAA--TACTAACCTG-TAA--AGGGA--AGTTGAAGTATTTCCTTGATTTTATGTGTAG---ACAAA-TTG--G--TAT-GGAT---TTTA-CTTATCTTACTTA---T
gi|19 : atgttaacttcgcT--TTACTTTT-T-TATGG-AAT-AAAAAA--ATAGA-ATTAAACGAAACA-CATT-AATAC----GGAAT-AT---A-A----A---AG----------A-----TTGGTGT-AGT-CG-ATA-TAG-AGTCT-AAACT
gi|2 : gataTTTAG-A--TTAAAAAATA-ATG--C-T--GGAT---G-T----C--AATAAGA----CATGTAAA-AT-GTGAATT--CGGG-AATA-CGTTC--A-GGGGTGTCCCATTTCTC-----AT-GACA--TGTT-TG-TTAGTG-TAGA-TTGAAAATTCTAGCTATTTAGATTAAGATGGA---------C---AATAACAGA-AA-T-A-AG---GTGGAT-TGGTATG-ATT--TT--CAAA--GAT-A-GAGAT--GATCAAACCATGA--T-ATCCCTTAAA-A-TATAGTCCCTAGCTTAC--G-C-ATGGG-ATGATTTGTACATTTAAACCTT-GAGAG-ATGAGTCTATCAT-GT-----GTAACTTGAC-TCATCCGAAA-CGAA-ATCAATATCTTTCC-A---ATTAAA---GGT-T-C-TGGTA-T-GGAAACATAAATGTTTCTTTTAAAAA--C-G-A-T-TGACATACTT-CTT---TTG-TGA--CT-TGAAACA-T-CAAAACTTTAACA-CTTTTT--GAT-ATTAAGAAA-----------TTAATACATCTGTG-----T------ATCAAA-AAAGCTCT-CAG--GTG-TTTT-ATGA-----G----------AAATCCTGATTCATTATGT-----ACAAAAA---AAATGGA-T-ATAGATGTAG-TGTTATGGAATCA-GAA--TATTGGAAACAACTATATTAGTCGAAATCAGT---GAAAACTAGA-AAACTGCATCT-ACT-CT--TTGTGGTT-GGAGTATTAAATTG-TAAATTCGTGAACAC
gi|21 : ttcatataattaaagccaatgaaaaatattcttctgtttttgtgacaattcttaatgacgaagtgatatacttgataaacatgtatgcgttttaccagaaattatatacgttctccataatgtagagactcgaaattacagatgcttacttattcaatattagatttggagacaaaaatctatatcatgactgataaatcttttcttagatctccactcacaatgaaagaaagtcgttgtgcctttgtttcaaaatcatgaaattagaggtaagaaaggtgccttgggttaacggtctatcccctcactgaacgttttagagacatttggcgagaaactcaaacaatacttttttttcttctgttgataagcatccttgataccgaagaaatccgtgtttaacatttacacaaagtattaagctgtttactaaatacataaaatggaagggtgaaaaatacctcccttggtacatgataactattaggtacccatagagtcttacaaacacaaggactaataaaatcattgggcttttacgttggcgaagaggctacaaaaaataatagattaagtttaatagcaatattatgatcagtcaagctatcagctaattaaaggcataatgcgtctattcaataggaataaaatcaagaaatctatcttatagtggcatattcttggttgtgaataaattgcgaaggaaatcgataactacttgatgggtgatttgcttcttatttcttcgatttcagagagaagcatttttaagatgatcatattgcatattggatattttaatgtttaatcataggagtctaaaagaatcatttttaatatttgggtgatgaaaaaatctttataggaagtaatggagtataaaaaactatacatatatagtaagatacctattct--GA-CAT----CGAAAA-TACAAAA-TA-TG-TCAA-TGAAAGCCA-CATCAGAG--ATA--TTTGTAC-AGAAATCA----CTGTGAA---CCACTGA-ATACAA-G--T
gi|3 : TTAG-A--TTAAAAAATATATG-GGCT--GGAT---GAT----C--AA----AAAAACATGTAAA-ATTG--AATC--GAGG-TATA-CGT-C--A-GGG-TGTCATATTTCGGTCG--ATTGA-A--TTTTGTT-TT---G-TA-AATTGAAT-TTTTGGCCATTCA-ATTA-----AG---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-ACAAGAT--G-TCAAAG-ATGA--TTAT-----AAA-AAT-TAGTCC--AACC-ACCGG-C-A---GGATGATT-GTAC-TTTA--CCTTTGAAAGCATGAAACTATCAT-T------AAAACTCG-CCTC-TC--AAAAGAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCTT---AAAA--CAGGA-A-TG-CATACTTTCTTTCCG-G-TGGGTTA-TGAAACA-CCAAAAACATTAACA-C-TTTT--GATAATTAA-AAA-----------TT-----------G-----T------ATCAAA-AG---TCTCC-G--GTTGTTTT-ATTG-----GT-CAAT-A-TAAA----GA---ATTATTTTTAC-A-AAAAAT---ACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGAAAACAACT---TT--TCGAATCCTG----GAAAACTAGGAAATCT-----T-ACT-CTTCT-----TT-GGAAAAT---GTTGTTA---TCGTGACCACT-CTTG--CGAT-ATCTAAA-C--TG-AAC----TAGC-TCTATTTTAA--TTA-CCACCGAC-AAAA-GAA---AT-A-A-ACA-CATGCCGAAAAATTA--TT--TTTCATTTCC-TATGGAAATAAGAAAAGCACAGACATTAAAAGAAATACCAATGGAT-C-----GAACAATA--A-AA--CA---A--GT--GGG--A------TAGTATGTGT-TGCATACTTG-AATGT-AAACTAAAAG-CAATCAAAGC---CTTCTT-GA-----TA---G--ATAAAAATCACCAACCTG-TAATCAGGTA--AATTGAAG-ATTTCCTT-ATTCTTGGTGTAG---ACAAAGTTG--GT-TGT-GAAT-CTTTTA-CTTATCTTACTTATATTACAAATG-AATT-G-AACGTGGC-TATCAAAAATCAT-ACCATTGTTCGC-A-TAA-A-------------TAC--CAAG-AGA-TA--TTTA--TTTCTTTAATGA-ATGT-TAA----T-TC-AT-CAA-G-TCC----AAAATAT--TG--CC-AATCTG-CAG-A---ACTTTT-TTATCACAAT-CCTGTGGC----AACAATACAATTCATTATCACTATACAAGGAAAGA-CAATTTGCTTTA-CA--GA-CT-GG--A--TAAAAAGGTTGGCGTTTTCTT---TTATCTATG--TTAAA-GAT-ATTGTT-GATAAAAAAAATGG-CTTTTG--ACA-ATC-AAC-ACCAAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GC-GAAATTGGTTA--TGTGAATTATAAAT----ATGAAATA--CTGTTTAAGAACT-----TATG-TAACCG--GAA-TA--T--GACCATG--TCTAAAA-GA--ACA-TATTG-TCAA-CGAAAGCCACCATAGGAT--ATAC-TTTTTAC-AGAAAACAACCTCTGTGGAAACCACCTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|4 : TTTTTAGGA--TTAAAAA-TA-ATG-GT-G--GGATTCTG-T----C--AA----A----C-T-TAAATAT-G--A-TC--GGG--AATAACGT-C--A-GGG--GTTCCATTTCT-GCG--AT-GCGA--CTTT-TGTTT---G-TA-A--TGAAA-TCCATGCTATTAAG-TTA-----GA---------GTG-AATAA-AAAGAA-T-A-A----G--GAT-T----AG-AT---TT--CAAAGAGAT-A-GAGATTGG-TCAAAG-ATGAGGT-AT-----GAA-A-A-TAGTTC--AGC--AC--G-CAA---G-AT-ATCTGTAT-CTTAATCACTTGAAA--AT--A-GTATCAT-TG-----ATAA-TTG-C-TCTTC--GAA-GAAATACAAA-ATCTTTC--AAACAT--AA---GGTTT-C-T-GTA-T-G-AAAC-T-AATTTTTC-----AAAA--CGG-ACATTG-CATACT---CT---G-G-TGA--CA-TG-AACATC-AAGAA-ACTAAT--C-CTTT--GAT-A-TAA-AAA-----------TTA----------GAGAGCTATGTGAATCAAA-AAC--TCT-C-G--GTATTT-------------------------A----CA---ATTA-----ACTACAAAAAT--AATTGCATT-A-AGATGTAT-T--------ATCA-T-ATTTA-TGGAAA-AACT---TT--TCGActata
gi|5 : ggagcctgtacgaatgaattaaaacacgcggatgtataacgttcggttttgggatcaaaataatgggacggataacatgatactttggataacgtatgcgttttaccagaaaattaatatagtccaccaaatgtaggaagactccggaaattacaggatgtgtctcactatagggagtattagatggtaaaaaaggaatatgatcgtatcatatattgacacctaatgattctttccacatcagagagtgggaagaagtcgttgtgctttgttcacagaactgtaataagagtcctgggttagacggtctcccctctgaagttcttatcgagacattttgggagaaaactcaagccataactgtttttttgcttctattgataagtgcatttgaagaatgaaatgtttaaacatttttacaataagattagcctgtttttatcttactatctagatagagaggtagagtgaatatccagagagtccggtcgtgaatggaaattaagagatagacctgcattaaatcttactctaaaatcacagactgattaaaaatcatatggctttaccactttgggcgaagaggacaaaaaatagaaagttcatagcaaatgatattcactgtatagatttatatggtaaatcaatcaagaatatagtgggcgagtatctcttgggaacacttagcacacaaaacagaatccattttggctcacttcgtcacagaggagcgctaatgttggatctctaatgaaataagttttatgtgatataatatagatgcatatctaactttagcgtaaagaggtggttgtgagtaaatgataaatatagctaatatgtaaagaactaTCTTTAG-A--TTAAAAA-TA-ATG-GG-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GAGG-TATA-CGT-C--A-GGG-TGTCATATTTCTTTCG--AT-GAT---TTTT-TG-TT---G-TA-A-TTG-AA-TTTTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-ATAAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-AATAA-AAA-----------TTG-----------------------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATATTTAC-ATAAAAAT--AACTGGA-T-A-AGA-GCA--T--------ATCA-G-A--TA-TGGAAA-AATT---GT--TCGAATCCTG----GAAAACTA-G-AATCT-----T-ACT-CT--C-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-TTAGCATCTATTTTAAATTTA-CCA-CG--AAAAA-GAA---AT-A-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GAT--A-----TTAGTA--TGT-TG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAA-CTG-TAA--AGGTA--AATTGAAGTATTTCCTT-ATTCTTTGTGTAG---ACAAAGTTG--GGTTGT-GAAT-C-TTTACCTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTA--ACCATTGT--GCAA-TAA-A--------------AC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGT-AAA----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCACAATCCCTGTG------AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GG--A--TAAAAAG--TGG-GTTTTTTT---T----TATA--TTAAA-GAT-ATTGTT-GAT---AAAAATGG-C--TTG--A-A-ATC-AAC-A-CAAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GCGAAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-TG--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGAT--ATA--TTTTTACAAGAAACAA--CTCTGT-GAAACC--CTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|6 : GAT---G-T----C--AA----AAA--CATGTAAA-AT-G--AATC--GAGG-TATA-CGT-C--AGGGG-TGTCta
gi|6 : G-TGTCATATTTCTT-CG--AT-GATA--TTTT-TG-TTT--G-TA-A-TT-AAA-TT-TGGCACTTCAGATTA-----AG---------CTT-AATAA-AGA-AA-T-A-AG---G---ATAT----TATACA--TTTTCAAA-AGAT-A-AAGATT-G-TCAATG-ATGA--T-ATT----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATT-GTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-T------AAAACTCG-C-TC-TC--AAA-GAAT-A-CAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-A--C-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--T--TAACAC--C-AAAAACATTAACAAC-TTTT--GAT-ATACA-AAA-----------TT-----------G-----T------ATCAAACAG---TCT-C-GT-GTGTTTTT-ATTG-----GT-C-ATGA-TAAA----GA----TTATGTT-AC-A-AAAAAT--AACTGGA-T-A-AGAGGCA--T--------ATCA-G-A---A-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGA-AATCT-----T-ACTTCTC-T-----TT-GGAAAAT---GTTG-TA---TAGTGAACACT-CTTG--CGAT-ATCTAAAACT-TG-TATAT-G-AGC-TCTATTTTAAATTTA-CCA-CGACAAAA--GAA---ATAA-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATT-AAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AAACCA---AG-GT--GGT--AAATAGTTA-TAA-TGTGTG-ATG--TG-AATGTAAAACTAA----CAAT----------TCTTTGGA-----TA---G--ATGAAA--TACCAACCTG-T-A--AGGTA--AATTGAAGTTATTCCTTGATTCTTTGTGTAG---ACAAAG-TG--G--TGT-GAAT---TTTA-CTTATCTTACTTA---TACAAATGTAATTAG-AA----GT-TATC--AAATTAT-ACCATTGT--GC-A-TAACA-------------CACAAT--GAAGATTAT-TTAT--TTTCTTTAATGA-AAGTAAAAGT--C-TC-ATGCAATG-T-TACTAAAAATAT--TTTAGC-AA-CTG-AAG-AGATA--TTT-TTannnnnnnnnnnnnnnnnnnnnnnnngtgtcatatttcttcgatgatatttttgtttgtaattaaatttggcacttcagattaagcttaataaagaaataaggatattatacattttcaaaagataaagattgtcaatgatgatattaaaattagtccaacacgcagatgattgtactttacctttgaaagatgaactatcattaaaactcgctctcaaagaatacaaatctttcagtaaggtatctggtatgactaaatgtttctaaaacagaatgcatacttcttggtggttaacaccaaaaacattaacaacttttgatatacaaaattgtatcaaacagtctcgtgtgtttttattggtcatgataaagattatgttacaaaaaataactggataagaggcatatcagaatggaaaaacttttcgaatcctggaaaactagaaatcttacttctctttggaaaatgttgtatagtgaacactcttgcgatatctaaaacttgtatatgagctctattttaaatttaccacgacaaaagaaataaaacacatgcgaaaaattatttttttcatttctatggaatagaaaagacagaattaaagaaatacaatgatcggaacaataaaaccaaggtggtaaatagttataatgtgtgatgtgaatgtaaaactaacaattctttggatagatgaaataccaacctgtaaggtaaattgaagttattccttgattctttgtgtagacaaagtggtgtgaattttacttatcttacttatacaaatgtaattagaagttatcaaattataccattgtgcataacacacaatgaagattatttattttctttaatgaaagtaaaagtctcatgcaatgttactaaaaatattttagcaactgaagagatattttt
gi|7 : gatgtcaaaaacatgtaaaatgaatcgaggtatacgtcaggggtgtcannnnnnnnnnnnnnnnnnnnnnnnn--TTAAAAGTTG-ATG-G-----GAA-----------A--AA----A----CATGCTTG-AT-G----TCAAGAGG-AATA-AGA-C--AAGGG-TGTCCAATTTCG-GCGTTAT-GATACATATT-TG-TT---G-CA-A----AAA-TATTGGCC-TTAAAATTA-----AA---------A---GATGA-TCA-AA-TTA-AA---G--GAG-T----TA-ATA--T-----AA-ATAT-----GTT--A-TCAGAA-AT-------T-----AAATA-T-C--TCT--AAC--AT--G-C-G---G-ATGATTTA-AC-CTCA--GCCCTGAAAA-AGCAA-TTAT-------------AAC-------------------AA-TTCAA-ACGTTTT------GT--AA---T-CATGC-TGG-A-TCA-AAAA-TAAATGTAGCT----AAAA--CAC-A-A--------------------------------AAATA-C-AGAAG--TTAG--------T--GGT-ATTAA----------------TG----------G-----T------GCTGTA-AGCTGTTT-A-G--ACATTTTT-ATGG-----GT-A-AT-AATAAA----GA---AC-ATTGTTAC-A----AATTGAATTGGA-TTA-AACTACAGTT--------ATGAAG-A--TA-TGGAAA-AGCT---CT--TCGAATCATG----GAAAAGGAGG-AAATT-----G-ACA-ATA-T-----TT-GGTAAAT---CATG-TG---TAGTAAACTCT-TTGG--TTAT-ATCTAAA-CT-TA-TATAT-GTCGGGTCAATATTACCTTTA-CCA--GACGAAAATGAAAATATAATA-AAA-AAGG-TGAAAAGTAGCATT--TGTAATTT-TATATGG-GAT-AAACGCG-ATAGA-ATCAAACGTAATA-CGAT-AGT-T----TG--CAAT---G-TA--CATGTAG-GG--GAC--G-----GCGGCAT-AG---G---A-TTA-A---T-CAATTGAAAG-CCATAAAAG----CTTCGTGGA-----T
gi|8 : atatttggatccaactcgt-C-G--GTGTTTTT-ATTG-----GC-C-ATGA-TAAA----GA---ATTATGCT----ACAAAAAT--AATTGGA-T-A-AGATGTA--T--------ATCA-G-A--TA-TGGAAT-TTTT---TT--TCGAATCATG----GAAAACTAGA-ATTCT-----T-ACT-CT--T-----TTTGGGAAAT---GTTG-TA---TCGTGAACACA-CTTG--CAAT-ATCCAAA-CT-TG-TATAT-GTAGCATCTGTATTAAATTTA-ACG-CGACAAAAA-GAA---ATAA-A-ACA-TATG-CGGACAATTATTTTGTTTTCATTT-C-TATGG-AAT-AAAAAAG-ATAGA-ATTAAAAGAAATA-CAAT-GAT-T----GGAACAAT---AGAA--CA---AG-GT--GGT--A-----TTAATAT-TGT-TG-ACA-TTG-AATCT-AAACTAAAAG-CTATCAAAG----CTTCTTGGA-----TT---G--ATAAAA--TGCAAACCTG-TAA--AGGTA--AATTGAAATATTTTCTTGATTCTTTGTG
gi|9 : TTTAG-A--CTAAAAA-TA-ATATGC-T--G--T---G-T----CA-AA----A----CCTGTACA-AT-G--AGGC--GGGGCTATT-CGT-C--ATGGA-TGTC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGTACGTGATAAAAAATTTGAAGGACAAACTCCTCAGCAATCTTTTATTGCCAAGAAATTTTCAACGTAATACAGAGTAAATCTTCATGGATCCTTGATTATACACAAAAAAATCAGGTAAAATGTATGATTTGAAAAGTTTCTGAGTTTAATATTCACAATCATATTTAATAATCTTGTAGCTAAACAGAAATTTCACTTAGCAAATATTGGTATAGTGATATGAACGAAAAACTGTTTATCGTGTCAAAATAGTAAATAAATGAAAATAATGAGCATCTT
Unaligned ( gi|13 ): TACGTGATAAAAAATTGAGACACCTCCATCACCAATCTTTTACTTGCAAGAAATTTTCATATGCAGAGCTCAATCCTTTTCCATGGCCCTGATTTACACACAAAAAATCCAGTAAAATGTATGATAGAAAAGTTGCTGAATTTAATTTCAATTAATTTACCATAACTTGATAGCTAACCAGATATTTACATTAGCAAGTGAATAGTTGATATTGAACAAAAAACTGTTTATCCTTGCCCAAAGTAGTAATTGTAAATAATGAGCATTCTT
Unaligned ( gi|14 ): TATTACGTGATAAAAATTGAGACACTCATCACCAATCTTTTATTTCAAGAAATTTTCATATGCAGAGTAATCTTCCATGGCCCTTGATTTACACACAAAAAATCAGTAAAATGTATGATAGAAAAGTTGCTGAATTTAATTTCAAATTATTTAATAACTTGATAGCTAACAGATATTTACTTAGCAAGTGAAATAGTGATATTGAAAAAAAACTGTTTATCTTGCCAAAGTAGTAATGAAATAATGAGCATCT
Unaligned ( gi|20 ): TTTATAGGAATAAATGCAAGAATTATAGTAGATCTTTATGAATATTGCGAAGAAAATATTGCTGGTATTCTTTTATTTCTTGATTTTCAAAAA
Unaligned ( gi|22 ): TGTTAACTTCGCCTTTTTGTATACTAGATAGAGT
Alignments
lowQualScore : 1111111 222222222 1111 222 1 111 44444444444444444444 1111 111 11 22222 11 111 11 1 1 22222222 1 1 222222 111 1111 222222222222222 6666666666666666666666666666666666666 222 11 2222222222222222 1111 111111111 22222222222 1111 1 1111 1111111 33333333 111 111 111 1111111 111 111 11111111111111111 1 1111 11111 111 111 22222 222 111 1 1 1 2222 1 11 11 11 111 6666666666666666666666666 1 11 11 1 333333 3333333333 11 11111111 22222222 333333 1 1 11 11 33333 11 222 22222222 111 111 2222 11 222 111 1 2222 111 1 11 1 11 1 2222 111 22222 1 11 11 1 11111 11 11111 111 11 11 11111
lowQualScore : 4 55 8 4 0000000 666 3 8888888 111111111 2 3 3 6666 55 44 3 3 5555 6 555 66 4 6666 4 3 222 4 4 88 4 2 0 66666666666666666666 5 5 5 5 5 888 66 5 2222 5 999 77 5 555 33 5 5 8888 00000 5 77777 77 99 77 5 5 000 5 8 5 55 1 0 1 99999999 1 5 5 1 77 777 5 0 1 333333 77 000 1 5 5 5 5 5 5 7777 77 0 99999 5 1 77 111111111111111 5 5 4 77 5 77 5 1 5 9999999999999999999999999999999999999 5 555 5 5 11 0 5 8888888888888888 0000 888 555555555 66 5 5 5 0 66666666666 5 4444 5 0 888 66 7777 5 4444444 5 22222222 5 000 5 000 6 99 6 6 6 6 6 9 3 6 77 1 6 111 7 6 6 6 6 99 77 999 5 5 5 5 5 5 3333333 555 5 77 000 99999999999999999 77 77 5 1 5 0 3 5 6 2 7777 44444 111 99 99 6 99 99 6 444 44 00000 8 666 8 444 0 0 0 1111 0 99 3 33 3 33 666 9999999999999999999999999 0 33 33 8 0 000000 8 8 8888888888 0 11 33333333 8 22222222 8 4 2 777777 0 0 8 8 00 88 11 8 8 00000 11 111 77777777 444 0 8 8 8 444 5555 11 8 8 8 8 444 444 0 1111 111 3 0 33 5 3 33 2 3 0 1111 2 666 44444 0 33 33 0 55555 8 11 44444 8 8 8 8 1 666 99 8 11 3 5 0 55 8 8 44444 2
lowQualScore : . .. . . ....... ... . ....... ......... . . . .... .. .. . . .... . ... .. . .... . . ... . . .. . . . .................... . . . . . ... .. . .... . ... .. . ... .. . . .... ..... . ..... .. .. .. . . ... . . . .. . . . ........ . . . . .. ... . . . ...... .. ... . . . . . . . .... .. . ..... . . .. ............... . . . .. . .. . . . ..................................... . ... . . .. . . ................ .... ... ......... .. . . . . ........... . .... . . ... .. .... . ....... . ........ . ... . ... . .. . . . . . . . . .. . . ... . . . . . .. .. ... . . . . . . ....... ... . .. ... ................. .. .. . . . . . . . . .... ..... ... .. .. . .. .. . ... .. ..... . ... . ... . . . .... . .. . .. . .. ... ......................... . .. .. . . ...... . . .......... . .. ........ . ........ . . . ...... . . . . .. .. .. . . ..... .. ... ........ ... . . . . ... .... .. . . . . ... ... . .... ... . . .. . . .. . . . .... . ... ..... . .. .. . ..... . .. ..... . . . . . ... .. . .. . . . .. . . ..... .
lowQualScore : 4 55 3 0 8888888 444 6 6666666 555555555 0 6 6 7777 00 66 6 6 5555 7 777 11 4 2222 4 3 222 4 4 00 4 7 9 66666666666666666666 0 0 0 0 0 888 99 7 1111 7 666 99 7 111 66 7 7 0000 00000 7 77777 99 33 99 7 7 000 7 4 7 77 4 7 4 77777777 9 7 7 4 99 999 7 1 4 777777 99 000 7 7 7 7 7 7 7 9999 99 1 99999 7 4 11 444444444444444 7 7 3 11 7 99 7 7 7 1111111111111111111111111111111111111 7 777 0 0 99 1 0 1111111111111111 6666 888 999999999 99 0 0 0 1 00000000000 0 8888 0 0 888 99 9999 7 4444444 7 44444444 7 000 7 000 7 22 7 7 7 7 7 8 2 7 33 7 7 777 3 7 7 7 7 22 99 666 7 7 7 7 7 7 1111111 777 7 99 000 11111111111111111 44 44 7 4 7 1 0 7 7 5 9999 33333 777 22 22 7 22 22 7 000 00 00000 0 000 0 000 0 0 0 2222 0 22 2 22 2 88 555 5555555555555555555555555 0 22 88 0 6 000000 0 0 0000000000 8 00 66666666 0 88888888 0 2 5 888888 0 0 0 0 88 88 00 0 0 00000 00 888 22222222 222 8 0 0 0 000 2222 00 0 0 0 0 444 000 0 2222 000 2 0 88 0 2 88 5 2 0 2222 5 222 55555 0 88 88 0 88888 0 00 00000 0 0 0 0 0 666 00 0 00 2 0 8 66 0 0 55555 5
consensus : TCTTTAG-A--TTAAAAAATA-ATG-GN-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GGGG-NATA-CGT-C--A-GGG-TGTCCCATTTCTTGCG--AT-GATA--TTTT-TG-TT---G-TA-A-TTGAAA-TTCTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-A-AAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-ATTAA-AAA-----------TTA----------G-----T------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATGTTTAC-ACAAAAAT--AACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGG-AATCT-----T-ACT-CT--T-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-GTAGCATCTATTTTAAATTTA-CCG-CGACAAAAA-GAA---ATAA-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GGT--A-----TTAGTAT-TGT-TG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACCTG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTG--G--TGT-GAAT-C-TTTA-CTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTAT-ACCATTGT--GCAA-TAA-A-------------TAC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAA----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCGCAATCCCTGTGGC----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GGC-A--TAAAAAG--TGG-GTTTTTTT---T----TATG--TTAAA-GAT-ATTGTT-GAT---GAAAATGG-C-TTTG--A-A-ATC-AAC-A-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GCGGAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-TA--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGAT--ATA--TTTTTAC-AGAAATCA--CTCTGTGGAAACCCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
Reference ( family-1218 ) : TCTTTAG-A--TTAAAAAATA-ATG-GN-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GGGG-NATA-CGT-C--A-GGG-TGTCCCATTTCTTGCG--AT-GATA--TTTT-TG-TT---G-TA-A-TTGAAA-TTCTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-A-AAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-ATTAA-AAA-----------TTA----------G-----T------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATGTTTAC-ACAAAAAT--AACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGG-AATCT-----T-ACT-CT--T-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-GTAGCATCTATTTTAAATTTA-CCG-CGACAAAAA-GAA---ATAA-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GGT--A-----TTAGTAT-TGT-TG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACCTG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTG--G--TGT-GAAT-C-TTTA-CTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTAT-ACCATTGT--GCAA-TAA-A-------------TAC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAA----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCGCAATCCCTGTGGC----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GGC-A--TAAAAAG--TGG-GTTTTTTT---T----TATG--TTAAA-GAT-ATTGTT-GAT---GAAAATGG-C-TTTG--A-A-ATC-AAC-A-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GCGGAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-TA--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGAT--ATA--TTTTTAC-AGAAATCA--CTCTGTGGAAACCCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|1 : CTTGAG-ACATTAAAGAATA-ATG-GG-TCCGAGC---C-TTCAAC--AA----A----CATGTAAA-CT-G--AATC--GAGG-AATA-CGT-CCAG-GGG-TGTCCTATTTCTT-CG--AT-GATA--TTTT-TT-TT---GTTA-A-TTGAAA-TTTTAGCCATTCAGATTA-----CAGCTAACATGCT--AATAA-AGA-AATT-ACAGCGCG--GAT-T----TA-ACATCTT--CAAA-AGATCA-AAGAT--G-TCAAAG-A-GA--T-AT-----AAA-A-T---GTCC--AACA-AC--GCC-A---G-ATGATTGGTAC-TTTA--CCTTTGAAAGCATGAA-CAATCATATTTTTTAAAAACTCG-C-TC-GC--AA---AAA-ATCAACATCTTTCTAG---GT--GAACCGGTAT-CTTGGTATT-G-AAAC-TAAATGTTTCT----AAAAACCAG---A-TG-C-TACTT-CTT---GCGCTGG--TACTGAAACA-C-AAAAACATTAACA-C-TGTTCAGAT-ATAAA-AAATTAAATACATCTTA----------G-----T------ATCAAA-AC---TCT-C-GGCGTGTTTTTAATTGCCTCCATGC-AT-A--AAA----GA---ATTATGTTTA--ACAAAAAT--AACTGGA-T-A-ACATGCA--T--------ATCA-GCAACTA-TGGAAA-AACT---TT--TCGAATCCTGCCGCAAAAACTAGA-AATCT-----TCACT-CTC-T-----TT-GGAAAAG---CTTG-TA---TCGTGAACACTCCTTGCCCGATAATCTAAA-CTCTGCTATATCGTAGCATCTACTTTAAATTTACCCG-CGACAAAAA-GAA---ATAA-ACACAGCATG-CGCAAAAATAT----------------TGCGA-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-CGCGAGAAACAATAAAA-AA--CA---AGCGTCGGGCTAA-----TTAGTAT-TGA-TG-ATATTTGCAATAT-AAACCATAAGACAATCAAAGCCTTCTTCTTGGAGACTGTA---GCAATAAAA--TACTAACCTGCTAA--AGGCGACAATTGAAGTATTTCCTTGATTCTTTG-ATAAGACACACAATTGCCG--CGTGGAATAC-TTTA-CTTATCTTACTAA---TATAAATG-AATT-GCAA----GTCTATC-CAAA-TATAACCA-TGT--GCAATTAA-ATTACCCTACTGTTTAC--C--A-AGA-TATATCTACTTTCCTTTAATGACATGTAAAA----TCTCAAT-CAA-GCC-C----AAAATATTATT--TCAAA-CTGCAAGCA---A--TTT-TTATCTCAACCCCTGTGGCTGCGAACAATA-AATTC-TTATCA-TATA-AAGGAAAGA-CAATTTGCTTTA-CA--GA-CT-GGC-AGTTAAAAA---TGG---TTTTTT---A----TATGGCTTAAA-GATCATTGTT-GAT---GAAAATGGCC-TTTG--A-ACATCAAAC-A-C-AAT-GTTCTGAAT-GCTTCTTAACATTTTACCTTTGCAA--GC-GAAATTGGTTATGTGTGAA-TAT-AATATGCATGAAATACGCTGTTTAAGAAATGTTAATTTGCTA--CGCCGAAGTA--TTGAA-CATGCCTCTAAAATTA--AAATTA-TG-TCAA-CGAAAGCCACCATAGGA---ATAATTTTTTAC-AGAAATCA--CT-TGTCGAAACCCACTGACATACAACGGTTGCCAGTTTTTT-TAT
gi|10 : aagttataggaatacaaatcgcaacgattattagtagcatatttacgatatattgcgaagaaaataatattgactggtattcttttttattcttgatttatcaaaaacgcattttgatcctgcttgagtggaatttactgcttcaaagcttcttaaatctatttaatctctcggaataatttataaacgtgggtaaatatactatatcaaagaacctatcTTTAG-A--CTAAAAAATA-ATA-AT-T--GGTT---G-T----CAAAA----A----CCTGTACA-AT-G--AGGC--GGGG-CATT-CGT-CA-A-GGA-TGTCcgcgctatatacgtttgattagaaaatttgcagacacctcatcaccaatcttttattgcaagaaatcatttcatcatacagcagtaaatcttcatggccttgataccacaaaaaatcagttaaaatgtcatgcacagaaaagctctgcctgaatcttaattcaaatattaataactttgctagcaaacagccatatcgtacttagcaaatgcgaatactcatattgaacaaaaaaaactgttctttgtactcttgtcaaaaagtgtagctaatgaaaataatgagcatct
gi|11 : atcagcctgcctatataaaagggcgatatattggtatgaatacatgtactagacttattgtcgatatttttgattgttgtgaaaataatgaagaggcaattttgcttttactcgattttcaaaaggcatttgatttcgtcgaatggtcttttatgataaaaacactcgagttctttaattttggacaagaattcattaaatggattcaaatcttatacaaaaatccagaaATCA-TATA-AAGGAAAGAC-AATTTGCTTTAACA--AAACT-GG--A--TAAAAAG--TTG-ATTTCTTG---T----AATG--T-AAA-GAT-ATTTTTAGAT---GAAACTGG---TTTGCAA-A-ATC-AGCCA-C-AATGATTC---ATCG----TTAA-A-TTTAGCTT-G-AATAGCGGAAA------A--T-TGCGTTAT-CAC----AT---ATA-------------AT----ATATG-TA--CG--GAA-TAAGT--GA-CATG--TCTAATC-AA--AAA-TA-TGCTCAAGTGAAAGCCACCATTGAATTTATA--TTTTTAC-AGAAATCA--CTTTGTGGAAACCCACTCA-ATATAA-G--T-----TTTTTTC
gi|15 : TTTTTAA-A--TTAAAAAATA-ATG-GG-T--GGAT---G-T----C--AA----AAA--CATGTAAA-AT-G--AGTC--GGGG-AATA-CGT-C--AGGGG-TGTCCCATTTC-TGCG--AT-GATA--TTTT-TGTTT---G-TA-A-TTGAAA-TTCTAGCTATTCAGATTA-----GA----------TGAAATAA-AGA-AA-T-A-AG---G--Gtctattggcgtata
gi|16 : ggaattttatgctcaaagttctaaaatcatataatttggtgataattttataaagtggataaatatactatataaagaacctaTTATTTAACGA-ATGTAAAAAAGAT-TC-CC-CAA----------AAAAT-T--TT--GC----CTG-AAC-C---G--CTTATTAAAGGAATCGATATGGTGT--AATAAGA-AATTC-ATGT---TAAA-AAACAAAG-CCAATATATTTT--CATTAA-TTTGGCTA--TACAAAG--TGG----TTTTTAGAT----TAT---TTAAATGAT-ATTGTA-AAT---GAAAATGG-T-ATT---A-A-ACC-TAC-A--GAATGGTTC---gata
gi|17 : TTCAG-G--ATGAAAAATA-ATG-GT-T--GGAT---A-T----C--AAGA--A----CCTGTAAA-AT-G--TCTC--GAGG-CATC-CGT-C--A-AGGATGTCCCATTTC-TGCT--AT-AATT--TTTT-TGTTT---G-TT-A-CTGAAA-TTCTCGCTATTCAGATAA-----G
gi|18 : tacacggaaccttta----CTTTTTGTA-----TATTAG--ATAAAA--TACTAACCTG-TAA--AGGGA--AGTTGAAGTATTTCCTTGATTTTATGTGTAG---ACAAA-TTG--G--TAT-GGAT---TTTA-CTTATCTTACTTA---T
gi|19 : atgttaacttcgcT--TTACTTTT-T-TATGG-AAT-AAAAAA--ATAGA-ATTAAACGAAACA-CATT-AATAC----GGAAT-AT---A-A----A---AG----------A-----TTGGTGT-AGT-CG-ATA-TAG-AGTCT-AAACT
gi|2 : gataTTTAG-A--TTAAAAAATA-ATG--C-T--GGAT---G-T----C--AATAAGA----CATGTAAA-AT-GTGAATT--CGGG-AATA-CGTTC--A-GGGGTGTCCCATTTCTC-----AT-GACA--TGTT-TG-TTAGTG-TAGA-TTGAAAATTCTAGCTATTTAGATTAAGATGGA---------C---AATAACAGA-AA-T-A-AG---GTGGAT-TGGTATG-ATT--TT--CAAA--GAT-A-GAGAT--GATCAAACCATGA--T-ATCCCTTAAA-A-TATAGTCCCTAGCTTAC--G-C-ATGGG-ATGATTTGTACATTTAAACCTT-GAGAG-ATGAGTCTATCAT-GT-----GTAACTTGAC-TCATCCGAAA-CGAA-ATCAATATCTTTCC-A---ATTAAA---GGT-T-C-TGGTA-T-GGAAACATAAATGTTTCTTTTAAAAA--C-G-A-T-TGACATACTT-CTT---TTG-TGA--CT-TGAAACA-T-CAAAACTTTAACA-CTTTTT--GAT-ATTAAGAAA-----------TTAATACATCTGTG-----T------ATCAAA-AAAGCTCT-CAG--GTG-TTTT-ATGA-----G----------AAATCCTGATTCATTATGT-----ACAAAAA---AAATGGA-T-ATAGATGTAG-TGTTATGGAATCA-GAA--TATTGGAAACAACTATATTAGTCGAAATCAGT---GAAAACTAGA-AAACTGCATCT-ACT-CT--TTGTGGTT-GGAGTATTAAATTG-TAAATTCGTGAACAC
gi|21 : ttcatataattaaagccaatgaaaaatattcttctgtttttgtgacaattcttaatgacgaagtgatatacttgataaacatgtatgcgttttaccagaaattatatacgttctccataatgtagagactcgaaattacagatgcttacttattcaatattagatttggagacaaaaatctatatcatgactgataaatcttttcttagatctccactcacaatgaaagaaagtcgttgtgcctttgtttcaaaatcatgaaattagaggtaagaaaggtgccttgggttaacggtctatcccctcactgaacgttttagagacatttggcgagaaactcaaacaatacttttttttcttctgttgataagcatccttgataccgaagaaatccgtgtttaacatttacacaaagtattaagctgtttactaaatacataaaatggaagggtgaaaaatacctcccttggtacatgataactattaggtacccatagagtcttacaaacacaaggactaataaaatcattgggcttttacgttggcgaagaggctacaaaaaataatagattaagtttaatagcaatattatgatcagtcaagctatcagctaattaaaggcataatgcgtctattcaataggaataaaatcaagaaatctatcttatagtggcatattcttggttgtgaataaattgcgaaggaaatcgataactacttgatgggtgatttgcttcttatttcttcgatttcagagagaagcatttttaagatgatcatattgcatattggatattttaatgtttaatcataggagtctaaaagaatcatttttaatatttgggtgatgaaaaaatctttataggaagtaatggagtataaaaaactatacatatatagtaagatacctattct--GA-CAT----CGAAAA-TACAAAA-TA-TG-TCAA-TGAAAGCCA-CATCAGAG--ATA--TTTGTAC-AGAAATCA----CTGTGAA---CCACTGA-ATACAA-G--T
gi|3 : TTAG-A--TTAAAAAATATATG-GGCT--GGAT---GAT----C--AA----AAAAACATGTAAA-ATTG--AATC--GAGG-TATA-CGT-C--A-GGG-TGTCATATTTCGGTCG--ATTGA-A--TTTTGTT-TT---G-TA-AATTGAAT-TTTTGGCCATTCA-ATTA-----AG---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-ACAAGAT--G-TCAAAG-ATGA--TTAT-----AAA-AAT-TAGTCC--AACC-ACCGG-C-A---GGATGATT-GTAC-TTTA--CCTTTGAAAGCATGAAACTATCAT-T------AAAACTCG-CCTC-TC--AAAAGAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCTT---AAAA--CAGGA-A-TG-CATACTTTCTTTCCG-G-TGGGTTA-TGAAACA-CCAAAAACATTAACA-C-TTTT--GATAATTAA-AAA-----------TT-----------G-----T------ATCAAA-AG---TCTCC-G--GTTGTTTT-ATTG-----GT-CAAT-A-TAAA----GA---ATTATTTTTAC-A-AAAAAT---ACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGAAAACAACT---TT--TCGAATCCTG----GAAAACTAGGAAATCT-----T-ACT-CTTCT-----TT-GGAAAAT---GTTGTTA---TCGTGACCACT-CTTG--CGAT-ATCTAAA-C--TG-AAC----TAGC-TCTATTTTAA--TTA-CCACCGAC-AAAA-GAA---AT-A-A-ACA-CATGCCGAAAAATTA--TT--TTTCATTTCC-TATGGAAATAAGAAAAGCACAGACATTAAAAGAAATACCAATGGAT-C-----GAACAATA--A-AA--CA---A--GT--GGG--A------TAGTATGTGT-TGCATACTTG-AATGT-AAACTAAAAG-CAATCAAAGC---CTTCTT-GA-----TA---G--ATAAAAATCACCAACCTG-TAATCAGGTA--AATTGAAG-ATTTCCTT-ATTCTTGGTGTAG---ACAAAGTTG--GT-TGT-GAAT-CTTTTA-CTTATCTTACTTATATTACAAATG-AATT-G-AACGTGGC-TATCAAAAATCAT-ACCATTGTTCGC-A-TAA-A-------------TAC--CAAG-AGA-TA--TTTA--TTTCTTTAATGA-ATGT-TAA----T-TC-AT-CAA-G-TCC----AAAATAT--TG--CC-AATCTG-CAG-A---ACTTTT-TTATCACAAT-CCTGTGGC----AACAATACAATTCATTATCACTATACAAGGAAAGA-CAATTTGCTTTA-CA--GA-CT-GG--A--TAAAAAGGTTGGCGTTTTCTT---TTATCTATG--TTAAA-GAT-ATTGTT-GATAAAAAAAATGG-CTTTTG--ACA-ATC-AAC-ACCAAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GC-GAAATTGGTTA--TGTGAATTATAAAT----ATGAAATA--CTGTTTAAGAACT-----TATG-TAACCG--GAA-TA--T--GACCATG--TCTAAAA-GA--ACA-TATTG-TCAA-CGAAAGCCACCATAGGAT--ATAC-TTTTTAC-AGAAAACAACCTCTGTGGAAACCACCTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|4 : TTTTTAGGA--TTAAAAA-TA-ATG-GT-G--GGATTCTG-T----C--AA----A----C-T-TAAATAT-G--A-TC--GGG--AATAACGT-C--A-GGG--GTTCCATTTCT-GCG--AT-GCGA--CTTT-TGTTT---G-TA-A--TGAAA-TCCATGCTATTAAG-TTA-----GA---------GTG-AATAA-AAAGAA-T-A-A----G--GAT-T----AG-AT---TT--CAAAGAGAT-A-GAGATTGG-TCAAAG-ATGAGGT-AT-----GAA-A-A-TAGTTC--AGC--AC--G-CAA---G-AT-ATCTGTAT-CTTAATCACTTGAAA--AT--A-GTATCAT-TG-----ATAA-TTG-C-TCTTC--GAA-GAAATACAAA-ATCTTTC--AAACAT--AA---GGTTT-C-T-GTA-T-G-AAAC-T-AATTTTTC-----AAAA--CGG-ACATTG-CATACT---CT---G-G-TGA--CA-TG-AACATC-AAGAA-ACTAAT--C-CTTT--GAT-A-TAA-AAA-----------TTA----------GAGAGCTATGTGAATCAAA-AAC--TCT-C-G--GTATTT-------------------------A----CA---ATTA-----ACTACAAAAAT--AATTGCATT-A-AGATGTAT-T--------ATCA-T-ATTTA-TGGAAA-AACT---TT--TCGActata
gi|5 : ggagcctgtacgaatgaattaaaacacgcggatgtataacgttcggttttgggatcaaaataatgggacggataacatgatactttggataacgtatgcgttttaccagaaaattaatatagtccaccaaatgtaggaagactccggaaattacaggatgtgtctcactatagggagtattagatggtaaaaaaggaatatgatcgtatcatatattgacacctaatgattctttccacatcagagagtgggaagaagtcgttgtgctttgttcacagaactgtaataagagtcctgggttagacggtctcccctctgaagttcttatcgagacattttgggagaaaactcaagccataactgtttttttgcttctattgataagtgcatttgaagaatgaaatgtttaaacatttttacaataagattagcctgtttttatcttactatctagatagagaggtagagtgaatatccagagagtccggtcgtgaatggaaattaagagatagacctgcattaaatcttactctaaaatcacagactgattaaaaatcatatggctttaccactttgggcgaagaggacaaaaaatagaaagttcatagcaaatgatattcactgtatagatttatatggtaaatcaatcaagaatatagtgggcgagtatctcttgggaacacttagcacacaaaacagaatccattttggctcacttcgtcacagaggagcgctaatgttggatctctaatgaaataagttttatgtgatataatatagatgcatatctaactttagcgtaaagaggtggttgtgagtaaatgataaatatagctaatatgtaaagaactaTCTTTAG-A--TTAAAAA-TA-ATG-GG-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GAGG-TATA-CGT-C--A-GGG-TGTCATATTTCTTTCG--AT-GAT---TTTT-TG-TT---G-TA-A-TTG-AA-TTTTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-ATAAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-AATAA-AAA-----------TTG-----------------------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATATTTAC-ATAAAAAT--AACTGGA-T-A-AGA-GCA--T--------ATCA-G-A--TA-TGGAAA-AATT---GT--TCGAATCCTG----GAAAACTA-G-AATCT-----T-ACT-CT--C-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-TTAGCATCTATTTTAAATTTA-CCA-CG--AAAAA-GAA---AT-A-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GAT--A-----TTAGTA--TGT-TG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAA-CTG-TAA--AGGTA--AATTGAAGTATTTCCTT-ATTCTTTGTGTAG---ACAAAGTTG--GGTTGT-GAAT-C-TTTACCTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTA--ACCATTGT--GCAA-TAA-A--------------AC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGT-AAA----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCACAATCCCTGTG------AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GG--A--TAAAAAG--TGG-GTTTTTTT---T----TATA--TTAAA-GAT-ATTGTT-GAT---AAAAATGG-C--TTG--A-A-ATC-AAC-A-CAAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GCGAAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-TG--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGAT--ATA--TTTTTACAAGAAACAA--CTCTGT-GAAACC--CTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|6 : GAT---G-T----C--AA----AAA--CATGTAAA-AT-G--AATC--GAGG-TATA-CGT-C--AGGGG-TGTCta
gi|6 : G-TGTCATATTTCTT-CG--AT-GATA--TTTT-TG-TTT--G-TA-A-TT-AAA-TT-TGGCACTTCAGATTA-----AG---------CTT-AATAA-AGA-AA-T-A-AG---G---ATAT----TATACA--TTTTCAAA-AGAT-A-AAGATT-G-TCAATG-ATGA--T-ATT----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATT-GTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-T------AAAACTCG-C-TC-TC--AAA-GAAT-A-CAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-A--C-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--T--TAACAC--C-AAAAACATTAACAAC-TTTT--GAT-ATACA-AAA-----------TT-----------G-----T------ATCAAACAG---TCT-C-GT-GTGTTTTT-ATTG-----GT-C-ATGA-TAAA----GA----TTATGTT-AC-A-AAAAAT--AACTGGA-T-A-AGAGGCA--T--------ATCA-G-A---A-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGA-AATCT-----T-ACTTCTC-T-----TT-GGAAAAT---GTTG-TA---TAGTGAACACT-CTTG--CGAT-ATCTAAAACT-TG-TATAT-G-AGC-TCTATTTTAAATTTA-CCA-CGACAAAA--GAA---ATAA-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATT-AAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AAACCA---AG-GT--GGT--AAATAGTTA-TAA-TGTGTG-ATG--TG-AATGTAAAACTAA----CAAT----------TCTTTGGA-----TA---G--ATGAAA--TACCAACCTG-T-A--AGGTA--AATTGAAGTTATTCCTTGATTCTTTGTGTAG---ACAAAG-TG--G--TGT-GAAT---TTTA-CTTATCTTACTTA---TACAAATGTAATTAG-AA----GT-TATC--AAATTAT-ACCATTGT--GC-A-TAACA-------------CACAAT--GAAGATTAT-TTAT--TTTCTTTAATGA-AAGTAAAAGT--C-TC-ATGCAATG-T-TACTAAAAATAT--TTTAGC-AA-CTG-AAG-AGATA--TTT-TTannnnnnnnnnnnnnnnnnnnnnnnngtgtcatatttcttcgatgatatttttgtttgtaattaaatttggcacttcagattaagcttaataaagaaataaggatattatacattttcaaaagataaagattgtcaatgatgatattaaaattagtccaacacgcagatgattgtactttacctttgaaagatgaactatcattaaaactcgctctcaaagaatacaaatctttcagtaaggtatctggtatgactaaatgtttctaaaacagaatgcatacttcttggtggttaacaccaaaaacattaacaacttttgatatacaaaattgtatcaaacagtctcgtgtgtttttattggtcatgataaagattatgttacaaaaaataactggataagaggcatatcagaatggaaaaacttttcgaatcctggaaaactagaaatcttacttctctttggaaaatgttgtatagtgaacactcttgcgatatctaaaacttgtatatgagctctattttaaatttaccacgacaaaagaaataaaacacatgcgaaaaattatttttttcatttctatggaatagaaaagacagaattaaagaaatacaatgatcggaacaataaaaccaaggtggtaaatagttataatgtgtgatgtgaatgtaaaactaacaattctttggatagatgaaataccaacctgtaaggtaaattgaagttattccttgattctttgtgtagacaaagtggtgtgaattttacttatcttacttatacaaatgtaattagaagttatcaaattataccattgtgcataacacacaatgaagattatttattttctttaatgaaagtaaaagtctcatgcaatgttactaaaaatattttagcaactgaagagatattttt
gi|7 : gatgtcaaaaacatgtaaaatgaatcgaggtatacgtcaggggtgtcannnnnnnnnnnnnnnnnnnnnnnnn--TTAAAAGTTG-ATG-G-----GAA-----------A--AA----A----CATGCTTG-AT-G----TCAAGAGG-AATA-AGA-C--AAGGG-TGTCCAATTTCG-GCGTTAT-GATACATATT-TG-TT---G-CA-A----AAA-TATTGGCC-TTAAAATTA-----AA---------A---GATGA-TCA-AA-TTA-AA---G--GAG-T----TA-ATA--T-----AA-ATAT-----GTT--A-TCAGAA-AT-------T-----AAATA-T-C--TCT--AAC--AT--G-C-G---G-ATGATTTA-AC-CTCA--GCCCTGAAAA-AGCAA-TTAT-------------AAC-------------------AA-TTCAA-ACGTTTT------GT--AA---T-CATGC-TGG-A-TCA-AAAA-TAAATGTAGCT----AAAA--CAC-A-A--------------------------------AAATA-C-AGAAG--TTAG--------T--GGT-ATTAA----------------TG----------G-----T------GCTGTA-AGCTGTTT-A-G--ACATTTTT-ATGG-----GT-A-AT-AATAAA----GA---AC-ATTGTTAC-A----AATTGAATTGGA-TTA-AACTACAGTT--------ATGAAG-A--TA-TGGAAA-AGCT---CT--TCGAATCATG----GAAAAGGAGG-AAATT-----G-ACA-ATA-T-----TT-GGTAAAT---CATG-TG---TAGTAAACTCT-TTGG--TTAT-ATCTAAA-CT-TA-TATAT-GTCGGGTCAATATTACCTTTA-CCA--GACGAAAATGAAAATATAATA-AAA-AAGG-TGAAAAGTAGCATT--TGTAATTT-TATATGG-GAT-AAACGCG-ATAGA-ATCAAACGTAATA-CGAT-AGT-T----TG--CAAT---G-TA--CATGTAG-GG--GAC--G-----GCGGCAT-AG---G---A-TTA-A---T-CAATTGAAAG-CCATAAAAG----CTTCGTGGA-----T
gi|8 : atatttggatccaactcgt-C-G--GTGTTTTT-ATTG-----GC-C-ATGA-TAAA----GA---ATTATGCT----ACAAAAAT--AATTGGA-T-A-AGATGTA--T--------ATCA-G-A--TA-TGGAAT-TTTT---TT--TCGAATCATG----GAAAACTAGA-ATTCT-----T-ACT-CT--T-----TTTGGGAAAT---GTTG-TA---TCGTGAACACA-CTTG--CAAT-ATCCAAA-CT-TG-TATAT-GTAGCATCTGTATTAAATTTA-ACG-CGACAAAAA-GAA---ATAA-A-ACA-TATG-CGGACAATTATTTTGTTTTCATTT-C-TATGG-AAT-AAAAAAG-ATAGA-ATTAAAAGAAATA-CAAT-GAT-T----GGAACAAT---AGAA--CA---AG-GT--GGT--A-----TTAATAT-TGT-TG-ACA-TTG-AATCT-AAACTAAAAG-CTATCAAAG----CTTCTTGGA-----TT---G--ATAAAA--TGCAAACCTG-TAA--AGGTA--AATTGAAATATTTTCTTGATTCTTTGTG
gi|9 : TTTAG-A--CTAAAAA-TA-ATATGC-T--G--T---G-T----CA-AA----A----CCTGTACA-AT-G--AGGC--GGGGCTATT-CGT-C--ATGGA-TGTC
blockSeqs : G . A T GGCT TCT A CAA TAAGA C T T TGAA AA CT A T AA A GGT TT T TACA G T AGT . G AT A C AGATGGAC C G . T . . TG A GGTA T T TT G AC TG A C GGT CCCTT T TATA CT TT CG . A TGG G T A AA C T GT T A C A CG AAG T T AAAC TA . A G . . C G A TTTA . ACAT A A TT TCCGGTGGGTTA T C C AA T . A T G TTAGAGAGCTATGTGA C AGC C A T . GTCAATAT TCCT TTC ATTTACAT TG T T T GTGTTATGGA A ATT T C ATA AG T A GCATCT T TTGTGG T TAA T AAT . . . A . . . A A . AC A T AAT A T . . C TT GT CC A A C C C G ACG A G AC TGT GTGGTAAATAGT TG TG C C . C A . C C . TTA . AT . TC . G . GT GGT . CT C TAT T A . CGTG . AA T T T TC AA CACACAATGA T T . . A AAGAT . G TGTTACTA . TAGCAA . AGATA A G C GTGT C A C C AC AA TT A T CTA GT CGT TTATC G T . A AAA CTT CA C . . C CCA . C . A T . TA G T . G T A . G C A . AC . . AGT C . TACA . T C G T TTT C A AC T G CA . . TG C
blockSeqs : . . A . TGCT . . CA AAAAA A . . AG . C . . AG G TTT . . TA . T T . . T . C GATGA . . . . . . . . . . A . . AT T . . TT T . ATTA . C . . . . . T . AT . A TG A . . T . AC . . CA . . T . . . . . . T . GAA . A T TTGTGACT . . C A . . . T . TTAATACATCTGTGT . CTG . . . . GTCATGAT . . TTTTACA . . . . GTT . AA . C . . . . T . TCT . . . . . . . . . . . G A . A A . . A . . . . TT . TA . . . . . . CG . . . . GTGATAT T T . . . G . . C . . . . . . . . G . GT GT . C . . . . . . . A T T T . A ATACCAAG . T . . A GTC . . GTCC . CCAAT . AACT . A C GC . . . . AC A . . . A . AT AGAT G . . . . TA . . . . . CA . . . A T . . G T . G T . . G C A . . . . T . . AA . . . . C G . . . C G CA . . TG C
blockSeqs : . . A . ATT . . C AAA C . . AG . A . . AG . TG . . TT . T . . . C . C GAGTG . . . . . . . . . . A . . A . . . T . . ATA . . . . . . . T . . . . TT T . . . . AG . . A . . A . . . . . . . . AT . A T GGTGACA . . C A . . . A . TTGT . C . . . . GTAATAAT . . TGTTACA . . . . TT . A . . . . . . T . CT . . . . . . . . . . . A C . A G . . A . . . . CA . T . . . . . . CG . . . . GGGACGG A T . . . G . . A . . . . . . . . G . T G . . . . . . . . . . T . T . A AACCG . . . . . T . . GTC . GCAA . CG . A . . . . . . C A . . . A . GT T A . . . . T . . . . . C . . . A . . . . . . . T . . . . . . . . . T . . GA . . . . A T . . . C G AC . . T C
blockSeqs : . . A . GGT . . C GAA A . . TC . C . . AA . TG . . CA . . . . . T . T AGCTT . . . . . . . . . . A . . A . . . T . . TTA . . . . . . . T . . . . T A . . . . AG . . A . . A . . . . . . . . AA . A T GGTGGTA . . C A . . . T . TTGT . . . . . . GCCATGAT . . GTTACA . . . . T . A . . . . . . T . AT . . . . . . . . . . . . A . A A . . . . . . . TT . C . . . . . . TT . . . . GTGGTAT T T . . . G . . C . . . . . . . . . . G G . . . . . . T . . . . GC . AA . . . A . . . . A . . T . . . . . C . . . . . G . . . TG . . . . A T . . . C . . . .
blockSeqs : . . A . GTT . . C AAA A . . AA . A . . AT . TC . . GA . . . . . T . C AGCT . . . . . . . . . . A . . A . . . T . . TTA . . . . . . . . . . . . T A . . . . AG . . A . . A . . . . . . . . AA . A . GGTGGT . . . . . . . T . TGGT . . . . . . GTCATAT . . ACTAC . . . . T . A . . . . . . G . C . . . . . . . . . . . . . . G . . . . . . . . . . C . . . . . . TG . . . . GTGGGA T T . . . C . . . . . . . . . . . .
blockSeqs : . . T . GTG . . C A A . . AA . T . . A . TG . . TA . . . . . T . T GACT . . . . . . . . . . . . . . . . . . . . TC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AA . . . . . . . . . . . . . TTG . . . . . . G . . GCTAC . . . . T . A . . . . . . T . T . . . . . C . . . . . . C . . . . AT . . . . . . . . .
blockSeqs : . . . . GGT . . C A A . . AA . A . . A . TT . . A . . . . . . . T AAA . . . . . . . . . . . . . . GTAC . . . . T . A . . . .
blockSeqs : . . . . CT . . C A A . . AG . T . . A . GG . . T . . . . . . . .
blockSeqs : . . . G . . C A C . . A . T . . A .
blockSeqs : . . A A . . . . . A . . A .
blockSeqs : .
blockSeqCons : ** GTT**** C****** A*** AGNT**************** *** A** A** TTA** ** T******* AG* A***** *** ** AA*** GGTGGCA******** ** TTAGT******************************** ** GTCATGAT******** GTTACA*** A*** **** T****** CT****** ** TT C** CG***** *** GTGGTAT********** **** ***** ** ** *** G**** C** GT**** GTC******* ** AA****** A**** GT* G** T*** *** ** NA*** T** **
originalCons : TCTTTAG-A--TTAAAAAATA-ATG-GN-T--GGAT---G-T----C--AA----A----CATGTAAA-AT-G--AATC--GGGG-NATA-CGT-C--A-GGG-TGTCCCATTTCTTGCG--AT-GATA--TTTT-TG-TT---G-TA-A-TTGAAA-TTCTGGCCATTCAGATTA-----GA---------CT--AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGAT-A-AAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT-TT-----AAAACTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--CAG-A-A-TG-CATACTT-CTT---G-G-TGG--TA-TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-ATTAA-AAA-----------TTA----------G-----T------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTG-----GT-C-AT-A-TAAA----GA---ATTATGTTTAC-ACAAAAAT--AACTGGA-T-A-AGATGCA--T--------ATCA-G-A--TA-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGG-AATCT-----T-ACT-CT--T-----TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-GTAGCATCTATTTTAAATTTA-CCG-CGACAAAAA-GAA---ATAA-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GGT--A-----TTAGTAT-TGT-TG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACCTG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTG--G--TGT-GAAT-C-TTTA-CTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTAT-ACCATTGT--GCAA-TAA-A-------------TAC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAA----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCGCAATCCCTGTGGC----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GGC-A--TAAAAAG--TGG-GTTTTTTT---T----TATG--TTAAA-GAT-ATTGTT-GAT---GAAAATGG-C-TTTG--A-A-ATC-AAC-A-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GCGGAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-TA--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGAT--ATA--TTTTTAC-AGAAATCA--CTCTGTGGAAACCCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
finalCons : TCTTTAG-A--TTAAAAAATA-ATGGTT----GGAT---G-TC------AA----A----CATGTAAA-AT-G--AATC--GGGG-NATA-CGT-CA---GGG-TGTCCCATTTCTTGCG--AT-GATA--TTTT-TG-TT---G-TA-A-TTGAAA-TTCTGGCCATTCAGATTAAGNT----------------AATAA-AGA-AA-T-A-AG---G--GAT-T----TA-ACA--TT--CAAA-AGATA--AAGAT--G-TCAAAG-ATGA--T-AT-----AAA-ATTA--GTCC--AAC--AC--G-C-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCATT-------AAAACTCG-C-TC-TC--AAAG-AAA-ATCAA-ATCTTTCA-----GT--AA---GGTAT-C-TGGTA-T-G-AAAC-TAAATGTTTCT----AAAA--CAGAA---TG-CATACTT-CTTGGTGGCA--------TGAAACA-C-AAAAACATTAACA-C-TTTT--GAT-ATTAA-AAATTAGT--------------------------------ATCAAA-AG---TCT-C-G--GTGTTTTT-ATTGGTCATGAT--------AAA----GA---ATTATGTTACA---AAAAAT--AACTGGA-T-A-AGATGCA--T--------ATCA-GA---TA-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGG-AATCTT------ACT-CTCT------TT-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-GTAGCATCTATTTTAAATTTA-CCG-CGACAAAAA-GAA---ATAA-A-ACA-CATG-CGAAAAATTATTTT--TTTCATTTC--TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GATCG-----GAACAAT---A-AA--CA---AGGTGGTAT----------TAGTAT-TGT-TG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACCTG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTGG----TGT-GAATC--TTTA-CTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTAT-ACCATTGT--GCAA-TAA-A-------------TAC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAAGT----TC-AT-CAAGTC-------AAAATAT--TT--GC-AA-CTG-AAGAA------TTT-TTATCGCAATCCCTGTGGC----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GGA----TAAAAAG--TGGGT-TTTTTT---T----TATG--TTAAA-GAT-ATTGTT-GAT---GAAAATGGT---TTG--A-A-ATC-AAC-A-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-AA--GCGGAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAANA---AAA-TA-TG-TCAA-CGAAAGCCACCATAGGAT--ATA--TTTTTAC-AGAAATCA--CTCTGTGGAAACCCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGTACGTGATAAAAAATTTGAAGGACAAACTCCTCAGCAATCTTTTATTGCCAAGAAATTTTCAACGTAATACAGAGTAAATCTTCATGGATCCTTGATTATACACAAAAAAATCAGGTAAAATGTATGATTTGAAAAGTTTCTGAGTTTAATATTCACAATCATATTTAATAATCTTGTAGCTAAACAGAAATTTCACTTAGCAAATATTGGTATAGTGATATGAACGAAAAACTGTTTATCGTGTCAAAATAGTAAATAAATGAAAATAATGAGCATCTT
Unaligned ( gi|13 ): TACGTGATAAAAAATTGAGACACCTCCATCACCAATCTTTTACTTGCAAGAAATTTTCATATGCAGAGCTCAATCCTTTTCCATGGCCCTGATTTACACACAAAAAATCCAGTAAAATGTATGATAGAAAAGTTGCTGAATTTAATTTCAATTAATTTACCATAACTTGATAGCTAACCAGATATTTACATTAGCAAGTGAATAGTTGATATTGAACAAAAAACTGTTTATCCTTGCCCAAAGTAGTAATTGTAAATAATGAGCATTCTT
Unaligned ( gi|14 ): TATTACGTGATAAAAATTGAGACACTCATCACCAATCTTTTATTTCAAGAAATTTTCATATGCAGAGTAATCTTCCATGGCCCTTGATTTACACACAAAAAATCAGTAAAATGTATGATAGAAAAGTTGCTGAATTTAATTTCAAATTATTTAATAACTTGATAGCTAACAGATATTTACTTAGCAAGTGAAATAGTGATATTGAAAAAAAACTGTTTATCTTGCCAAAGTAGTAATGAAATAATGAGCATCT
Unaligned ( gi|20 ): TTTATAGGAATAAATGCAAGAATTATAGTAGATCTTTATGAATATTGCGAAGAAAATATTGCTGGTATTCTTTTATTTCTTGATTTTCAAAAA
Unaligned ( gi|22 ): TGTTAACTTCGCCTTTTTGTATACTAGATAGAGT
Alignments
lowQualScore : 1111 22222222222222222 1111 222 1 111 333333333333333333 1111 11111 111 11 22222 11 11111 11 1 11 222222 1 11 1 222222 111 1 111111 111 222222222222222 1 8888888888888888888888888 222 1111 11 22222222222 11111 1 1111 11 1111111 1111 111 111 111 11111 1111111 111 111 11111111111111111 11 1 1111 11111 111 111 22222 222 111 1 1 1 2222 1 11 11 11 111 6666666666666666666666666 1 11 11 3333333 3333333333 11 11111111 22222222 333333 1 1 11 11 22 11 222 22222222 1111 111 22 11 222 111 1 2222 111 1111 1 11 1 2222 111 22222 1 11 11 1 11111 11 11111 111 11 11 11111
lowQualScore : 4 55 8 4 3333 666 3 22222222222222222 2 3 3 6666 55 44 3 3 5555 6 555 66 4 6666 4 3 222 4 4 88 4 2 0 333333333333333333 5 5 5 5 888 66 5 2222 5 1 33333 5 555 33 5 5 8888 00000 5 77777 77 33 5 77 44444 5 8 5 55 1 22 222222 5 5 5 5 1 77 00 5 0 1 333333 77 000 1 5 5 1 5 5 555555 77 55 333 5 1 5 1 555555555555555 1 4 77 5 77 5 1 5 3333333333333333333333333 5 555 5 5 5 66 0 5 777 99 5555 888 5 0 11 5 66 333 3 5 5 5 0 66666666666 5 44444 5 0 888 66 7777 22 4444444 5 5 2222 000 5 000 6 99 6 6 6 6 6 9 3 6 77 5 6 111 6 6 6 6 22222 999 5 5 5 5 5 5 3333333 555 5 77 000 99999999999999999 11 77 5 1 5 0 3 5 6 2 7777 44444 111 99 99 6 99 99 6 444 44 00000 8 666 8 444 0 0 0 1111 0 99 3 33 3 33 666 9999999999999999999999999 0 33 33 8 4444444 8 8 8888888888 0 11 33333333 8 22222222 8 4 2 777777 0 0 8 8 00 88 11 8 8 22 11 111 77777777 5555 8 8 8 444 22 11 8 8 8 8 444 444 0 1111 111 3 4444 5 3 33 2 3 0 1111 2 777 44444 0 33 33 0 55555 8 11 44444 8 8 8 8 1 666 99 8 11 3 5 0 55 8 8 44444 2
lowQualScore : . .. . . .... ... . ................. . . . .... .. .. . . .... . ... .. . .... . . ... . . .. . . . .................. . . . . ... .. . .... . . ..... . ... .. . . .... ..... . ..... .. .. . .. ..... . . . .. . .. ...... . . . . . .. .. . . . ...... .. ... . . . . . . ...... .. .. ... . . . . ............... . . .. . .. . . . ......................... . ... . . . .. . . ... .. .... ... . . .. . .. ... . . . . . ........... . ..... . . ... .. .... .. ....... . . .... ... . ... . .. . . . . . . . . .. . . ... . . . . ..... ... . . . . . . ....... ... . .. ... ................. .. .. . . . . . . . . .... ..... ... .. .. . .. .. . ... .. ..... . ... . ... . . . .... . .. . .. . .. ... ......................... . .. .. . ....... . . .......... . .. ........ . ........ . . . ...... . . . . .. .. .. . . .. .. ... ........ .... . . . ... .. .. . . . . ... ... . .... ... . .... . . .. . . . .... . ... ..... . .. .. . ..... . .. ..... . . . . . ... .. . .. . . . .. . . ..... .
lowQualScore : 4 55 3 0 8888 444 6 55555555555555555 0 6 6 7777 00 66 6 6 5555 7 777 11 4 2222 4 3 222 4 4 00 4 7 9 111111111111111111 0 0 0 0 888 99 7 1111 7 7 77777 7 111 66 7 7 0000 00000 7 77777 99 66 7 99 66666 7 4 7 77 4 11 111111 7 7 7 7 4 99 00 7 1 4 777777 99 000 7 7 7 4 7 7 999999 99 99 111 7 4 7 4 444444444444444 4 3 11 7 99 7 7 7 7777777777777777777777777 7 777 0 0 0 99 1 0 666 55 6666 888 0 9 99 0 99 666 4 0 0 0 1 00000000000 0 88888 0 0 888 99 9999 00 4444444 7 7 1111 000 7 000 7 22 7 7 7 7 7 8 2 7 33 7 7 777 7 7 7 7 00000 666 7 7 7 7 7 7 1111111 777 7 99 000 11111111111111111 11 44 7 4 7 1 0 7 7 5 9999 33333 777 22 22 7 22 22 7 000 00 00000 0 000 0 000 0 0 0 2222 0 22 2 22 2 88 555 5555555555555555555555555 0 22 88 0 8888888 0 0 0000000000 8 00 66666666 0 88888888 0 2 5 888888 0 0 0 0 88 88 00 0 0 00 00 888 22222222 0000 0 0 0 000 00 00 0 0 0 0 444 000 0 2222 000 2 8888 0 2 88 5 2 0 2222 5 000 55555 0 88 88 0 88888 0 00 00000 0 0 0 0 0 666 00 0 00 2 0 8 66 0 0 55555 5
consensus : TCTTTAG-A--TTAAAAAATA-ATG-G-CTGGAT---G-TC------AA----A----CATGTAAA-AT-G--AATC--GGGG-NATA-CGT-C--A-GGG-TGTCCCATTTCTTGCG--AT-GATA--TTTT-TG-TT---GT-A-A-TTGAAA-TTCTGGCCATTCAGATTA--------A--GCT----AATAA-AGA-AAT-A-AG---G--GAT-T----TA-ACAT--T--CAAA-AGAT-A-AAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--A-C--GC-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT------T-AAAA-CTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-CT-GGTAT-G-AAAC-TAAATGTTTC-T----AAAA--CA-GA-A-TG-CATAC-TTCTT---G-G-TGG--TA-TGAAACA-CAAAAACATTAACA-C-TTTT--GAT-ATTAA-AAATTA-----------G-----T------ATCAAA-AG---TCT-C-G-G--TGTTTTTA-TTGGT--CATG-ATAAA----GA---ATTA-TGTT--ACA-AA--AAATAACTGGA-T-A-AGATGCA--T--------ATCA-G--A--TA-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGA-AATCT-----T-ACT-C-TCT----TTGGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-GTAGCATCTATTTTAAATTTA-CCG-CGACAAAAA-GAA---ATAA-A-ACA-CATG-CGAAAAATTATTT--TTTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GGT--A-----TTAGTAT-TGT-TG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACCTG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTG--G--TGT-GAAT-C-TTTAC-TTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTAT-ACCATTGT--GCAA-TAA-A-------------TAC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAA----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCGCAATCCCTGTGGC----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GGC-ATAAAAAG--TGG-GTTTTTTT---T----TATG--TTAAA-GAT-ATTGTT-GAT---GAAAATGGC-TTTG--A-A-ATC-AA-CA-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-A--AGCGGAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-TA--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGA--TATA--TTTTTAC-AGAAATCA--CTCTGTGGAAACCCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
Reference ( family-1218 ) : TCTTTAG-A--TTAAAAAATA-ATG-G-TTGGAT---G-TC------AA----A----CATGTAAA-AT-G--AATC--GGGG-NATA-CGT-C--A-GGG-TGTCCCATTTCTTGCG--AT-GATA--TTTT-TG-TT---GT-A-A-TTGAAA-TTCTGGCCATTCAGATTA--------A--GNT----AATAA-AGA-AAT-A-AG---G--GAT-T----TA-ACAT--T--CAAA-AGAT-A-AAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--A-C--GC-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT------T-AAAA-CTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-CT-GGTAT-G-AAAC-TAAATGTTTC-T----AAAA--CA-GA-A-TG-CATAC-TTCTT---G-G-TGG--CA-TGAAACA-CAAAAACATTAACA-C-TTTT--GAT-ATTAA-AAATTA-----------G-----T------ATCAAA-AG---TCT-C-G-G--TGTTTTTA-TTGGT--CATG-ATAAA----GA---ATTA-TGTT--ACA-AA--AAATAACTGGA-T-A-AGATGCA--T--------ATCA-G--A--TA-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGG-AATCT-----T-ACT-C-TCT----TTGGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-GTAGCATCTATTTTAAATTTA-CCG-CGACAAAAA-GAA---ATAA-A-ACA-CATG-CGAAAAATTATTT--TTTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GGT--A-----TTAGTAT-TGT-TG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAACCTG-TAA--AGGTA--AATTGAAGTATTTCCTTGATTCTTTGTGTAG---ACAAAGTTG--G--TGT-GAAT-C-TTTAC-TTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTAT-ACCATTGT--GCAA-TAA-A-------------TAC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAAAG---T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCGCAATCCCTGTGGC----AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GG--ATAAAAAG--TGG-GTTTTTTT---T----TATG--TTAAA-GAT-ATTGTT-GAT---GAAAATGG--TTTG--A-A-ATC-AA-CA-CGAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-A--AGCGGAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-NA--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGA--TATA--TTTTTAC-AGAAATCA--CTCTGTGGAAACCCACTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|1 : CTTGAG-ACATTAAAGAATA-ATG-GGTCCGA----G-CCTTCAACAA----A----CATGTAAA-CT-G--AATC--GAGG-AATA-CGT-CCAG-GGG-TGTCCTATTTCTT-CG--AT-GATA--TTTT-TT-TT---GTTA-A-TTGAAA-TTTTAGCCATTCAGATTACAGCTAACAT-GCT----AATAA-AGA-AATTACAGCGCG--GAT-T----TA-ACATCTT--CAAA-AGATCA-AAGAT--G-TCAAAG-A-GA--T-AT-----AAA-A-T---GTCC--AAC--AAC--GCCA---G-ATGATTGGTAC-TTTA--CCTTTGAAAGCATGAA-CAATCATATTTTTT-AAAAACTCG-C-TC-GC--AAA---AA-ATCAACATCTTTCTAG---GT--GAACCGGTAT-CTTGGTATTG-AAAC-TAAATGTTTC-T----AAAAACCA-GA---TG-C-TAC-TTCTT---GCGCTGG--TACTGAAACA-CAAAAACATTAACA-C-TGTTCAGAT-ATAAA-AAATTAAATACATCTTAG-----T------ATCAAA-AC---TCT-C-G-GCGTGTTTTTAATTGCCTCCATGCATAAAA---GA---ATTA-TGTTTAACA-AA--AA-TAACTGGA-T-A-ACATGCA--T--------ATCA-GCAAC-TA-TGGAAA-AACT---TT--TCGAATCCTGCCGCAAAAACTAGA-AATCT-----TCACT-C-TCT----TTGGAAAAG---CTTG-TA---TCGTGAACACTCCTTGCCCGATAATCTAAA-CTCTGCTATATCGTAGCATCTACTTTAAATTTACCCG-CGACAAAAA-GAA---ATAA-ACACAGCATG-CGCAAAAATAT----------------TGCGA-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-CGCGAGAAACAATAAAA-AA--CA---AGCGTCGGGCTAA-----TTAGTAT-TGA-TG-ATATTTGCAATAT-AAACCATAAGACAATCAAAGCCTTCTTCTTGGAGACTGTA---GCAATAAAA--TACTAACCTGCTAA--AGGCGACAATTGAAGTATTTCCTTGATTCTTTG-ATAAGACACACAATTGCCG--CGTGGAATAC-TTTAC-TTATCTTACTAA---TATAAATG-AATT-GCAA----GTCTATC-CAAA-TATAACCA-TGT--GCAATTAA-ATTACCCTACTGTTTAC--C--A-AGA-TATATCTACTTTCCTTTAATGACATGTAAAAT---C-TCAAT-CAA-GCC-C----AAAATATTATT--TCAAA-CTGCAAGCA---A--TTT-TTATCTCAACCCCTGTGGCTGCGAACAATA-AATTC-TTATCA-TATA-AAGGAAAGA-CAATTTGCTTTA-CA--GA-CT-GGCAGTTAAAAA--TGG---TTTTTT---A----TATGGCTTAAA-GATCATTGTT-GAT---GAAAATGGCCTTTG--A-ACATCAAA-CA-C-AAT-GTTCTGAAT-GCTTCTTAACATTTTACCTTTGCA--AGC-GAAATTGGTTATGTGTGAA-TAT-AATATGCATGAAATACGCTGTTTAAGAAATGTTAATTTGCTA--CGCCGAAGTA--TTGAA-CATGCCTCTAAAATTA--AAATTA-TG-TCAA-CGAAAGCCACCATAGGA---ATAATTTTTTAC-AGAAATCA--CT-TGTCGAAACCCACTGACATACAACGGTTGCCAGTTTTTT-TAT
gi|10 : aagttataggaatacaaatcgcaacgattattagtagcatatttacgatatattgcgaagaaaataatattgactggtattcttttttattcttgatttatcaaaaacgcattttgatcctgcttgagtggaatttactgcttcaaagcttcttaaatctatttaatctctcggaataatttataaacgtgggtaaatatactatatcaaagaacctatcTTTAG-A--CTAAAAAATA-ATA-A-TTGGTT---G-TCAA----AA----A----CCTGTACA-AT-G--AGGC--GGGG-CATT-CGT-CA-A-GGA-TGTCcgcgctatatacgtttgattagaaaatttgcagacacctcatcaccaatcttttattgcaagaaatcatttcatcatacagcagtaaatcttcatggccttgataccacaaaaaatcagttaaaatgtcatgcacagaaaagctctgcctgaatcttaattcaaatattaataactttgctagcaaacagccatatcgtacttagcaaatgcgaatactcatattgaacaaaaaaaactgttctttgtactcttgtcaaaaagtgtagctaatgaaaataatgagcatct
gi|11 : atcagcctgcctatataaaagggcgatatattggtatgaatacatgtactagacttattgtcgatatttttgattgttgtgaaaataatgaagaggcaattttgcttttactcgattttcaaaaggcatttgatttcgtcgaatggtcttttatgataaaaacactcgagttctttaattttggacaagaattcattaaatggattcaaatcttatacaaaaatccagaaATCA-TATA-AAGGAAAGAC-AATTTGCTTTAACA--AAACT-GG--ATAAAAAG--TTG-ATTTCTTG---T----AATG---TAAA-GAT-ATTTTTAGAT---GAAACTGG--TTTGCAA-A-ATC-AGCCA-C-AATGATTC---ATCG----TTAA-A-TTTAGC-TTG-AATAGCGGAAA------A--T-TGCGTTAT-CAC----AT---AT-------------AAT----ATATG-TA--CG--GAA-TAAGT--GA-CATG--TCTAATC-AA--AAA-TA-TGCTCAAGTGAAAGCCACCATTGAATTTATA--TTTTTAC-AGAAATCA--CTTTGTGGAAACCCACTCA-ATATAA-G--T-----TTTTTTC
gi|15 : TTTTTAA-A--TTAAAAAATA-ATG-G-GTGGAT---G-TC------AA----AAA--CATGTAAA-AT-G--AGTC--GGGG-AATA-CGT-C--AGGGG-TGTCCCATTTC-TGCG--AT-GATA--TTTT-TGTTT---GT-A-A-TTGAAA-TTCTAGCTATTCAGATT---------A--GATGA--AATAA-AGA-AAT-A-AG---G--Gtctattggcgtata
gi|16 : ggaattttatgctcaaagttctaaaatcatataatttggtgataattttataaagtggataaatatactatataaagaacctaTTATTTAACGA-ATGTAAAAAAGAT-TC-CC-CAA----------AAAAT-T--TT--GC----CTG-AAC-C---G--CTTATTAAAGGAATCGATATGGTGT--AATAAGA-AATTC-ATGT---TAAA-AAACAAAG-CCAATATATTTT--CATTAA-TTTGGCTATACAAAG--TGG----TTTTTAGAT----TAT---TTAAATGAT-ATTGTA-AAT---GAAAATGG--TATT--A-A-ACC-TA-CA--GAATGGTTC---gata
gi|17 : TTCAG-G--ATGAAAAATA-ATG-G-TTGGAT---A-TC------AAGA--A----CCTGTAAA-AT-G--TCTC--GAGG-CATC-CGT-C--A-AGGATGTCCCATTTC-TGCT--AT-AATT--TTTT-TGTTT---GT-T-A-CTGAAA-TTCTCGCTATTCAGA-TA--------A--G
gi|18 : tacacggaaccttta----CTTTTTGTA-----TATTAG--ATAAAA--TACTAACCTG-TAA--AGGGA--AGTTGAAGTATTTCCTTGATTTTATGTGTAG---ACAAA-TTG--G--TAT-GGAT---TTTAC-TTATCTTACTTA---T
gi|19 : atgttaacttcgc--TTTACTTTT-T-TATGG-AAT-AAAAAA--ATAGA-ATTAAACGAAACA-CATT-AATAC----GGAAT-AT---A-A----A---AG----------A-----TTGGTGT-AGT-CG-ATA-TAG-AGTCT-AAACT
gi|2 : gataTTTAG-A--TTAAAAAATA-ATG---CTGGAT---G-TC------AATAAGA----CATGTAAA-AT-GTGAATT--CGGG-AATA-CGTTC--A-GGGGTGTCCCATTTCTC-----AT-GACA--TGTT-TG-TTAGTGT-AGA-TTGAAAATTCTAGCTATTTAGATTA--------A--GATGGACAATAACAGA-AAT-A-AG---GTGGAT-TGGTATG-ATTT--T--CAAA--GAT-A-GAGAT--GATCAAACCATGA--T-ATCCCTTAAA-A-TATAGTCCCTAGCTTA-C--GC-ATGGG-ATGATTTGTACATTTAAACCTT-GAGAG-ATGAGTCTATCATG-----T-GTAA-CTTGAC-TCATCCGAAA-CGAA-ATCAATATCTTTCC-A---ATTAAA---GGT-T-CT-GGTAT-GGAAACATAAATGTTTC-TTTTAAAAA--C--GA-T-TGACATAC-TTCTT---TTG-TGA--CT-TGAAACA-TCAAAACTTTAACA-CTTTTT--GAT-ATTAAGAAATTAATACATCTGT-G-----T------ATCAAA-AAAGCTCT-CAG-G--TGTTTT-----------ATG-AGAAATCCTGATTCATTA-TG-T--ACA-AA--AAA-AA-TGGA-T-ATAGATGTAG-TGTTATGGAATCA-GA-A--TATTGGAAACAACTATATTAGTCGAAATCAGT---GAAAACTAGA-AAACTGCATCT-ACT-C-TTTGTGGTTGGAGTATTAAATTG-TAAATTCGTGAACAC
gi|21 : ttcatataattaaagccaatgaaaaatattcttctgtttttgtgacaattcttaatgacgaagtgatatacttgataaacatgtatgcgttttaccagaaattatatacgttctccataatgtagagactcgaaattacagatgcttacttattcaatattagatttggagacaaaaatctatatcatgactgataaatcttttcttagatctccactcacaatgaaagaaagtcgttgtgcctttgtttcaaaatcatgaaattagaggtaagaaaggtgccttgggttaacggtctatcccctcactgaacgttttagagacatttggcgagaaactcaaacaatacttttttttcttctgttgataagcatccttgataccgaagaaatccgtgtttaacatttacacaaagtattaagctgtttactaaatacataaaatggaagggtgaaaaatacctcccttggtacatgataactattaggtacccatagagtcttacaaacacaaggactaataaaatcattgggcttttacgttggcgaagaggctacaaaaaataatagattaagtttaatagcaatattatgatcagtcaagctatcagctaattaaaggcataatgcgtctattcaataggaataaaatcaagaaatctatcttatagtggcatattcttggttgtgaataaattgcgaaggaaatcgataactacttgatgggtgatttgcttcttatttcttcgatttcagagagaagcatttttaagatgatcatattgcatattggatattttaatgtttaatcataggagtctaaaagaatcatttttaatatttgggtgatgaaaaaatctttataggaagtaatggagtataaaaaactatacatatatagtaagatacctattct--GA-CAT----CGAAAA-TACAAAA-TA-TG-TCAA-TGAAAGCCA-CATCAGA--GATA--TTTGTAC-AGAAATCA----CTGTGAA---CCACTGA-ATACAA-G--T
gi|3 : TTAG-A--TTAAAAAATATATG-GGCTGGAT---GATC------AA----AAAAACATGTAAA-ATTG--AATC--GAGG-TATA-CGT-C--A-GGG-TGTCATATTTCGGTCG--ATTGA-A--TTTTGTT-TT---GT-A-AATTGAAT-TTTTGGCCATTCA-ATTA--------A--GCT----AATAA-AGA-AAT-A-AG---G--GAT-T----TA-ACAT--T--CAAA-AGAT-ACAAGAT--G-TCAAAG-ATGA--TTAT-----AAA-AAT-TAGTCC--AACC-A-CCGGC-A---GGATGATT-GTAC-TTTA--CCTTTGAAAGCATGAAACTATCAT------T-AAAA-CTCG-CCTC-TC--AAAAGAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-CT-GGTAT-G-AAAC-TAAATGTTTCTT----AAAA--CAGGA-A-TG-CATACTTTCTTTCCG-G-TGGGTTA-TGAAACACCAAAAACATTAACA-C-TTTT--GATAATTAA-AAATT------------G-----T------ATCAAA-AG---TCTCC-G-G--TTGTTTTA-TTGGT--CAAT-ATAAA----GA---ATTATTTTT--ACA-AA--AAAT-ACTGGA-T-A-AGATGCA--T--------ATCA-G--A--TA-TGAAAACAACT---TT--TCGAATCCTG----GAAAACTAGGAAATCT-----T-ACT-CTTCT----TTGGAAAAT---GTTGTTA---TCGTGACCACT-CTTG--CGAT-ATCTAAA-C--TG-AAC----TAGC-TCTATTTTAA--TTA-CCACCGAC-AAAA-GAA---AT-A-A-ACA-CATGCCGAAAAATTA--T--TTTTCATTTCC-TATGGAAATAAGAAAAGCACAGACATTAAAAGAAATACCAATGGAT-C-----GAACAATA--A-AA--CA---A--GT--GGG--A------TAGTATGTGT-TGCATACTTG-AATGT-AAACTAAAAG-CAATCAAAGC---CTTCTT-GA-----TA---G--ATAAAAATCACCAACCTG-TAATCAGGTA--AATTGAAG-ATTTCCTT-ATTCTTGGTGTAG---ACAAAGTTG--GT-TGT-GAAT-CTTTTAC-TTATCTTACTTATATTACAAATG-AATT-G-AACGTGGC-TATCAAAAATCAT-ACCATTGTTCGC-A-TAA-A-------------TAC--CAAG-AGA-TA--TTTA--TTTCTTTAATGA-ATGTTAA-----T-TC-AT-CAA-G-TCC----AAAATAT--TG--CC-AATCTG-CAG-A---ACTTTT-TTATCACAAT-CCTGTGGC----AACAATACAATTCATTATCACTATACAAGGAAAGA-CAATTTGCTTTA-CA--GA-CT-GG--ATAAAAAGGTTGGCGTTTTCTT---TTATCTATG--TTAAA-GAT-ATTGTT-GATAAAAAAAATGGCTTTTG--ACA-ATC-AA-CACCAAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-A--AGC-GAAATTGGTTA--TGTGAATTATAAAT----ATGAAATA--CTGTTTAAGAACT-----TATG-TAACCG--GAA-TA--T--GACCATG--TCTAAAA-GA--ACA-TATTG-TCAA-CGAAAGCCACCATAGGA--TATAC-TTTTTAC-AGAAAACAACCTCTGTGGAAACCACCTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|4 : TTTTTAGGA--TTAAAAA-TA-ATG-G-TGGGATTCTG-TC------AA----A----C-T-TAAATAT-G--A-TC--GGG--AATAACGT-C--A-GGG--GTTCCATTTCT-GCG--AT-GCGA--CTTT-TGTTT---GT-A-A--TGAAA-TCCATGCTATTAAG-TTAG-------A--GTG----AATAA-AAAGAAT-A-A----G--GAT-T----AG-AT-T--T--CAAAGAGAT-A-GAGATTGG-TCAAAG-ATGAGGT-AT-----GAA-A-A-TAGTTC--AGC--A-C--GCAA---G-AT-ATCTGTAT-CTTAATCACTTGAAA--AT--A-GTATCAT------T-GATA-ATTG-C-TCTTC--GAA-GAAATACAAA-ATCTTTC--AAACAT--AA---GGTTT-CT--GTAT-G-AAAC-T-AATTTTTC------AAAA--CG-GACATTG-CATAC-T--CT---G-G-TGA--CA-TG-AACATCAAGAA-ACTAAT--C-CTTT--GAT-A-TAA-AAATTA-----------GAGAGCTATGTGAATCAAA-AAC--TCT-C-G-G--TATTT--------------------A----CA---ATTA--ACT--AC--AA--AAATAATTGCATT-A-AGATGTAT-T--------ATCA-T--ATTTA-TGGAAA-AACT---TT--TCGActata
gi|5 : ggagcctgtacgaatgaattaaaacacgcggatgtataacgttcggttttgggatcaaaataatgggacggataacatgatactttggataacgtatgcgttttaccagaaaattaatatagtccaccaaatgtaggaagactccggaaattacaggatgtgtctcactatagggagtattagatggtaaaaaaggaatatgatcgtatcatatattgacacctaatgattctttccacatcagagagtgggaagaagtcgttgtgctttgttcacagaactgtaataagagtcctgggttagacggtctcccctctgaagttcttatcgagacattttgggagaaaactcaagccataactgtttttttgcttctattgataagtgcatttgaagaatgaaatgtttaaacatttttacaataagattagcctgtttttatcttactatctagatagagaggtagagtgaatatccagagagtccggtcgtgaatggaaattaagagatagacctgcattaaatcttactctaaaatcacagactgattaaaaatcatatggctttaccactttgggcgaagaggacaaaaaatagaaagttcatagcaaatgatattcactgtatagatttatatggtaaatcaatcaagaatatagtgggcgagtatctcttgggaacacttagcacacaaaacagaatccattttggctcacttcgtcacagaggagcgctaatgttggatctctaatgaaataagttttatgtgatataatatagatgcatatctaactttagcgtaaagaggtggttgtgagtaaatgataaatatagctaatatgtaaagaactaTCTTTAG-A--TTAAAAA-TA-ATG-G-GTGGAT---G-TC------AA----A----CATGTAAA-AT-G--AATC--GAGG-TATA-CGT-C--A-GGG-TGTCATATTTCTTTCG--AT-GAT---TTTT-TG-TT---GT-A-A-TTGAA--TTTTGGCCATTCAGATTA--------G--ACT----AATAA-AGA-AAT-A-AG---G--GAT-T----TA-ACAT--T--CAAA-AGAT-ATAAGAT--G-TCAAAG-ATGA--T-AT-----AAA-A-T-TAGTCC--AAC--A-C--GC-A---G-ATGATTTGTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT------TTAAAA-CTCG-C-TC-TC--AAA-GAAA-ATCAA-ATCTTTC--A---GT--AA---GGTAT-CT-GGTAT-G-AAAC-TAAATGTTTC-T----AAAA--CA-GA-A-TG-CATAC-TTCTT---G-G-TGG--TA-TGAAACA-CAAAAACATTAACA-C-TTTT--GAT-AATAA-AAATTG------------------------ATCAAA-AG---TCT-C-G-G--TGTTTTTA-TTGGT--CAT--ATAAA----GA---ATTA-TATTT-ACATAA--AAATAACTGGA-T-A-AGA-GCA--T--------ATCA-G--A--TA-TGGAAA-AATT---GT--TCGAATCCTG----GAAAACTAG--AATCT-----T-ACT-C-TCT----T-GGAAAAT---GTTG-TA---TCGTGAACACT-CTTG--CGAT-ATCTAAA-CT-TG-TATAT-TTAGCATCTATTTTAAATTTA-CCA-CGA--AAAA-GAA---ATAA-A--CA-CATG-CGAAAAATTATTT--TTTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATTAAAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AA--CA---AG-GT--GAT--A-----TTAGTAT--GT-TG-ATA-TTG-AATGT-AAACTAAAAG-CAATCAAAG----CTTCTTGGA-----TA---G--ATAAAA--TACCAAC-TG-TAA--AGGTA--AATTGAAGTATTTCCTT-ATTCTTTGTGTAG---ACAAAGTTG--GGTTGT-GAAT-C-TTTACCTTATCTTACTTA---TACAAATG-AATT-G-AA----GT-TATC-AAAATTA--ACCATTGT--GCAA-TAA-A--------------AC--C--G-AGA-TAT-TTTA--TTTCTTTAATGA-ATGTAAA-----T-TC-AT-CAA-G-T-C----AAAATAT--TT--GC-AA-CTG-AAG-A---A--TTT-TTATCACAATCCCTGTG------AACAATA-AATTC-TTATCA-TATA-AAGGAAAGACCAATTTGCTTTA-CA--GA-CT-GG--ATAAAAAG--TGG-GTTTTTTT---T----TATA--TTAAA-GAT-ATTGTT-GAT---AAAAATGG--CTTG--A-A-ATC-AA-CA-CAAATGGTTC---AT-G----TTAA-A-TTTAGCTTTG-A--AGCGAAAATTGGTTA--TGTGAATTAT-AAT----ATGAAATA--CTGTTTAAGAAAT----ATATG-TA--CG--GAA-TA--T--GA-CATG--TCTAAAA-TG--AAA-TA-TG-TCAA-CGAAAGCCACCATAGGA--TATA--TTTTTACAAGAAACAA--CTCTGT-GAAACC--CTGA-ATACAA-G--TG-CAGTTTTTTCTATGG
gi|6 : GAT---G-TC------AA----AAA--CATGTAAA-AT-G--AATC--GAGG-TATA-CGT-C--AGGGG-TGTCta
gi|6 : G-TGTCATATTTCTT-CG--AT-GATA--TTTT-TG-TTT--GT-A-A-TT-AAA-TT-TGGCACTTCAGATTA--------A--GCTT---AATAA-AGA-AAT-A-AG---G---ATAT----TATACAT--TTTCAAA-AGAT-A-AAGATT-G-TCAATG-ATGA--T-ATT----AAA-A-T-TAGTCC--AAC--A-C--GC-A---G-ATGATT-GTAC-TTTA--CCTTTGAAAG-ATGAA-CTATCAT------T-AAAA-CTCG-C-TC-TC--AAA-GAAT-A-CAA-ATCTTTC--A---GT--AA---GGTAT-CT-GGTAT-G-A--C-TAAATGTTTC-T----AAAA--CA-GA-A-TG-CATAC-TTCTT---G-G-TGG--T--TAACAC--CAAAAACATTAACAAC-TTTT--GAT-ATACA-AAATT------------G-----T------ATCAAACAG---TCT-C-GTG--TGTTTTTA-TTGGT--CATG-ATAAA----GA----TTA-TGTT--ACA-AA--AAATAACTGGA-T-A-AGAGGCA--T--------ATCA-G--A---A-TGGAAA-AACT---TT--TCGAATCCTG----GAAAACTAGA-AATCT-----T-ACTTC-TCT----TTGGAAAAT---GTTG-TA---TAGTGAACACT-CTTG--CGAT-ATCTAAAACT-TG-TATAT-G-AGC-TCTATTTTAAATTTA-CCA-CGACAAAA--GAA---ATAA-A-ACA-CATG-CGAAAAATTATTT--TTTTCATTT-C-TATGG-AAT-AGAAAAG-ACAGA-ATT-AAAGAAATA-CAAT-GAT-C----GGAACAAT---A-AAACCA---AG-GT--GGT--AAATAGTTA-TAA-TGTGTG-ATG--TG-AATGTAAAACTAA----CAAT----------TCTTTGGA-----TA---G--ATGAAA--TACCAACCTG-T-A--AGGTA--AATTGAAGTTATTCCTTGATTCTTTGTGTAG---ACAAAG-TG--G--TGT-GAAT---TTTAC-TTATCTTACTTA---TACAAATGTAATTAG-AA----GT-TATC--AAATTAT-ACCATTGT--GC-A-TAACA-------------CACAAT--GAAGATTAT-TTAT--TTTCTTTAATGA-AAGTAAAAG---TCTC-ATGCAATG-T-TACTAAAAATAT--TTTAGC-AA-CTG-AAG-AGATA--TTT-TTannnnnnnnnnnnnnnnnnnnnnnnngtgtcatatttcttcgatgatatttttgtttgtaattaaatttggcacttcagattaagcttaataaagaaataaggatattatacattttcaaaagataaagattgtcaatgatgatattaaaattagtccaacacgcagatgattgtactttacctttgaaagatgaactatcattaaaactcgctctcaaagaatacaaatctttcagtaaggtatctggtatgactaaatgtttctaaaacagaatgcatacttcttggtggttaacaccaaaaacattaacaacttttgatatacaaaattgtatcaaacagtctcgtgtgtttttattggtcatgataaagattatgttacaaaaaataactggataagaggcatatcagaatggaaaaacttttcgaatcctggaaaactagaaatcttacttctctttggaaaatgttgtatagtgaacactcttgcgatatctaaaacttgtatatgagctctattttaaatttaccacgacaaaagaaataaaacacatgcgaaaaattatttttttcatttctatggaatagaaaagacagaattaaagaaatacaatgatcggaacaataaaaccaaggtggtaaatagttataatgtgtgatgtgaatgtaaaactaacaattctttggatagatgaaataccaacctgtaaggtaaattgaagttattccttgattctttgtgtagacaaagtggtgtgaattttacttatcttacttatacaaatgtaattagaagttatcaaattataccattgtgcataacacacaatgaagattatttattttctttaatgaaagtaaaagtctcatgcaatgttactaaaaatattttagcaactgaagagatattttt
gi|7 : gatgtcaaaaacatgtaaaatgaatcgaggtatacgtcaggggtgtcannnnnnnnnnnnnnnnnnnnnnnnn--TTAAAAGTTG-ATG-G---GAA-------A------AA----A----CATGCTTG-AT-G----TCAAGAGG-AATA-AGA-C--AAGGG-TGTCCAATTTCG-GCGTTAT-GATACATATT-TG-TT---GC-A-A----AAA-TATTGGCC-TTAAAATTA--------AAAGAT----GATCA-A---ATT-A-AA---G--GAG-T----TA-ATAT-------AA-ATAT-----GTT--A-TCAGAA-AT-------T-----AAATA-T-C--TCT--AAC--A-T--GC-G---G-ATGATTTA-AC-CTCA--GCCCTGAAAA-A-GCA------AT------T-ATAA-C-------------------AA-TTCAA-ACGTTTT------GT--AA---T-CATGCT-GG-ATCA-AAAA-TAAATGTAGC-T----AAAA--CA-CA-A--------------------------------AAATA-CAGAAG--TTAG--------T--GGT-ATTAA-----TG-----------G-----T------GCTGTA-AGCTGTTT-A-G-A--CATTTTTA-TGGGT--AATA-ATAAA----GA---ACAT-TGTT--ACA-AATTGAAT---TGGA-TTA-AACTACAGTT--------ATGAAG--A--TA-TGGAAA-AGCT---CT--TCGAATCATG----GAAAAGGAGG-AAATT-----G-ACA-A-TAT----TTGGTAAAT---CATG-TG---TAGTAAACTCT-TTGG--TTAT-ATCTAAA-CT-TA-TATAT-GTCGGGTCAATATTACCTTTA-CCA--GACGAAAATGAAAATATAATA-AAA-AAGG-TGAAAAGTAGCAT--TTGTAATTT-TATATGG-GAT-AAACGCG-ATAGA-ATCAAACGTAATA-CGAT-AGT-T----TG--CAAT---G-TA--CATGTAG-GG--GAC--G-----GCGGCAT-AG---G---A-TTA-A---T-CAATTGAAAG-CCATAAAAG----CTTCGTGGA-----T
gi|8 : atatttggatccaactcgt-C-G-G--TGTTTTTA-TTGGC--CATG-ATAAA----GA---ATTA-TGCT--ACA-AA--AA-TAATTGGA-T-A-AGATGTA--T--------ATCA-G--A--TA-TGGAAT-TTTT---TT--TCGAATCATG----GAAAACTAGA-ATTCT-----T-ACT-C-TTT----TTGGGAAAT---GTTG-TA---TCGTGAACACA-CTTG--CAAT-ATCCAAA-CT-TG-TATAT-GTAGCATCTGTATTAAATTTA-ACG-CGACAAAAA-GAA---ATAA-A-ACA-TATG-CGGACAATTATTTTGTTTTCATTT-C-TATGG-AAT-AAAAAAG-ATAGA-ATTAAAAGAAATA-CAAT-GAT-T----GGAACAAT---AGAA--CA---AG-GT--GGT--A-----TTAATAT-TGT-TG-ACA-TTG-AATCT-AAACTAAAAG-CTATCAAAG----CTTCTTGGA-----TT---G--ATAAAA--TGCAAACCTG-TAA--AGGTA--AATTGAAATATTTTCTTGATTCTTTGTG
gi|9 : TTTAG-A--CTAAAAA-TA-ATATG-CTG--T---G-TCA-----AA----A----CCTGTACA-AT-G--AGGC--GGGGCTATT-CGT-C--ATGGA-TGTC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGTACGTGATAAAAAATTTGAAGGACAAACTCCTCAGCAATCTTTTATTGCCAAGAAATTTTCAACGTAATACAGAGTAAATCTTCATGGATCCTTGATTATACACAAAAAAATCAGGTAAAATGTATGATTTGAAAAGTTTCTGAGTTTAATATTCACAATCATATTTAATAATCTTGTAGCTAAACAGAAATTTCACTTAGCAAATATTGGTATAGTGATATGAACGAAAAACTGTTTATCGTGTCAAAATAGTAAATAAATGAAAATAATGAGCATCTT
Unaligned ( gi|13 ): TACGTGATAAAAAATTGAGACACCTCCATCACCAATCTTTTACTTGCAAGAAATTTTCATATGCAGAGCTCAATCCTTTTCCATGGCCCTGATTTACACACAAAAAATCCAGTAAAATGTATGATAGAAAAGTTGCTGAATTTAATTTCAATTAATTTACCATAACTTGATAGCTAACCAGATATTTACATTAGCAAGTGAATAGTTGATATTGAACAAAAAACTGTTTATCCTTGCCCAAAGTAGTAATTGTAAATAATGAGCATTCTT
Unaligned ( gi|14 ): TATTACGTGATAAAAATTGAGACACTCATCACCAATCTTTTATTTCAAGAAATTTTCATATGCAGAGTAATCTTCCATGGCCCTTGATTTACACACAAAAAATCAGTAAAATGTATGATAGAAAAGTTGCTGAATTTAATTTCAAATTATTTAATAACTTGATAGCTAACAGATATTTACTTAGCAAGTGAAATAGTGATATTGAAAAAAAACTGTTTATCTTGCCAAAGTAGTAATGAAATAATGAGCATCT
Unaligned ( gi|20 ): TTTATAGGAATAAATGCAAGAATTATAGTAGATCTTTATGAATATTGCGAAGAAAATATTGCTGGTATTCTTTTATTTCTTGATTTTCAAAAA
Unaligned ( gi|22 ): TGTTAACTTCGCCTTTTTGTATACTAGATAGAGT