lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222
lowQualScore : 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 11 33333333 11 1 22 1 11 1 111 111 33333333 6666666666 11 11 1 333333 2222222 22222222222222 1111 1 3 2222
lowQualScore : 4 9 0 7 6 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 0 0 11 4 33333333 8 11 5 7 7 88 9 5 99 3 5 3 444 2 444 66666666 0 6666666666 11 11 0 333333 9999999 0 00000000000000 11 4444 6 6 0 1 8888
lowQualScore : . . . . . ................................................................................................................................. . . . .. . ........ . .. . . . .. . . .. . . . ... . ... ........ . .......... .. .. . ...... ....... . .............. .. .... . . . . ....
lowQualScore : 7 7 7 0 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 8 8 00 0 66666666 2 00 6 8 0 33 7 0 00 2 0 2 555 5 000 22222222 2 4444444444 00 00 0 888888 0000000 2 00000000000000 88 8888 7 0 0 7 3333
consensus : CTNTGAAAAAGAGGTCTGGGAGGAGATAGCAGATAAAGTCG-CTAAC--------C-ATTT--GCTCT--GGCGAGGAAN-TAAAANAAAAAGTGGACGT--GTNTGTCCAGTGAGAGCT-AAAAGCGA------------------GCTAGCATC-----GNGTAATAGAGAACAAAGCACTAAAACGGAG--AGCATTAATCACTCGCAGTG--AAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGGAATATTGAGCTCGTCAG-AGATTATAAGATCACGTGCCGTGG--AAGANGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-GGTCTAATGGA--TTGTT--TCTGT-CCCCGAAGATACGTTCCCTC-CGGATGANCTGTCCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAGTTT-AGAC-TAAGACA----TGTACCT
Reference ( gi|2 ) : CTATGAAAAAGAAGCCAGGGAGGAGATAACAGATAAAGTCGACTAACTTAT-TAGT-ATTT--GCTCCAAGGCGAGGAAA-TAAAAAAAAAAGTGGACGT--GTTTGTCTATTGAGAGC--AAAAATAA------------------GGTAGCATT-----GAGTAATGGAGAACAAAGCATTAAAACGGAG--AGCATTAATCACATGTAGTG--AAGTTGGTAGGGCATGAGAACTTTTT-TTGGGGTGTTCTAAAGAAATATTGCGCTCGTCAT-AGATTATAAGATCACTTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-AGTCTAATGGA--TTGTT--TCTGT-CCCGGATGATACGTTTTCAC-CGGATG--------------TACCAAAAT---ATA-TGCCGCCACCATGTTAAGTTT-AGACTTAAGACA----TGTATCT
gi|1 : CTTTGAAAAAGAGGTCTAAGAGGAAATAGCAGAAAAAGTCG-TTAATATGTCTAATCATTTACGCTCT--GGCGAGGAAA-T---------------CTTTAATATGTTCAGTGAGAGCTAAAAAACAAACGAAATAAAAAAAAAATGCTAGCATCGAATAGAATAATAGAGCACAAAGCA-TAA---------------AATCAC-TTTA--G--A---TGGTAGTGCATGTGGTCTTTTTAGTGGGGTGATCTAAAGGAATATTGAATTCGTCAG-AGAT--TAAAATCACGTGCAGTGG--AAGAATACATT-TGCCCA--------TATCCTCCATAT---------AGTCTAATGAA--TTGTT--TCTGT-TCTTGAAGATACGTTACC-T-CGTATGAGCTGTCTATTTTTTACCAA------ATA-GCCCGCCGCCATGTTAAATTC-AG
gi|13 : CTGTGAAAAAGAGGCCTGGGGGGAGATAGCAGATAAAGTCGTCTAAC--------C-ATCT--GCTCTAA-------ATT-TAAAATAAAAAGTGCACGT--GTTTTTCCAGTGAGAGCA-AAAAACAA------------------GCTAGCATT-----ACGTAATGGAGAACAAAGCttgtatctgaatgtcgcaagattatcatataagatttgaaaattttgtgaaatag
gi|3 : TATGAAAAAGATGTCTGGGATGAGATAGCAGATA--------------------C-ATTT--GCGCTCTGGCAAGAAAAGTAAAACAAAAAGTGGACGT--GTAAGTCCAGTGAGGGT--AAAAG--A------------------GGAA--------------AATAGAAAATAAAGCACTAAAACGGGG--AGCATTAATCACTAGCAGTG--AAGTTGACAGAGCATGAGATCTTTTT-GTGGATTGCTCTAAAGGAATATTGAGCTCGTCAG-AGATTATAAGATCACGTGCCGTGG--AAGAAGACA-CTTGCCCA--------TAATATTCATATCCTCCATATGGCCGAATGGA--TTGTTAAAATGT-CCCCG-----ACGTTCTCTC-CAGATGATATATTCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAG
gi|14 : AAT-TAAAAAAGAAAGTTGACGT--GTTTGTCCAGTCAGAGTT-AACAGGGA------------------GCTCACATT-----GGGTAATAGAAAACAAAACACTAAAACAGAG--AGCAATAGTCACTTGCATTG--ACGTTGGTAGAGTATGAAA
gi|21 : tGAGAACAAAGCATTAAAACGGAG--AGCACT--TC-----CAGTG--AAGTTGGTAGAGCACGAGATCT
gi|6 : AAATGAAGCTAGCATTG------CGTAATGGAAAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCATGAGATTATAAGATCACGTGCCGTGGTTCAGACGACA-C-TGCCCG--------TAATGTCCATAT-----A----GTCTAATGGA--TTGTT--TCTGTACTCGAA-GATACGTTCCCTC-CGGATGAGCTGGCCATTTCTTACCAAAATATAATA-TGCCACCGCCATGTTAAGT
gi|12 : AAAGAAATGTTGAGCTCGTCAG-AGATTAGAAGATCACGTGCCG-GG--GAGACGACA-C-TGCCTATACTATAGTAATGTCCATAT------T---GTCTAATGGA--TTGTT--TCTGaagtgtcttaaaatttcaaaccatcttaagattatcataa
gi|11 : cgCCATAT-----TTA-G---TAATGGAGTTTGTT--TCTGC-CCCTGAAG-TACGT---CACTCCGATGACCTATTTCT----TACCAAATT---ATACTGC-GCCGCCATGTTCAGTTT-AGACGTAAAACA----TGTACCTagactgaagatattcaagatacgttccctccg
gi|18 : atacatgttcgtagctgAAAT----TA-TGTCGCCGCCATGTTAAGTTT-AGAC-TAAGACA----ggatgtcgtaagacaaccttaaaattatcataaagaattga
gi|10 : TA-TAGCGCCGCCATGTTAAGTTTAAGAC-TAAGACATGATTGTATCTagctggacgtcttaagatttcaaaccatcttaagattatcactaagata
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): ATATACTCAAAATTGACCCAAGGATCTTAGATCTTTTACGTTTAAAAATTAAAATCTGCCATAACCGAACAATATTGTGTCCCATGAAATGCGGCTTTTGGTGTTGTTGATCAGATTTCAGCATTCTGTATTGATAAAAAAGTGCCATGCCGTTTCAGATGAATTTTCCATTCATAACCTGTATACACAGCTTTCTGAGAGTCAAATTCTATGTCTTTTTATGTTAGTGGCTAACATACACACATATAACCTTAGTGATTCTTATAAATTTTGAGTAGAT
Unaligned ( gi|5 ): ATTACTACTCAAAATTTTATAGAGATATAGGTAGACTCTTTCTGTTTTAAACAAAGTAATAACTGGTAATATGGTGTCCAAGTGAAATCAAAAACGTCATCGACAAACTTCAAGCATTCTGTATTGATAAAAGTTCATGCCGTTCCCGAATTTTTATTCATAACCTGAGTAAACATGTTTCTGAGTCAGATTTATGTCTTTTGTTGTGTTAGTGGTAAATTACACACATACATGTATAACCTAGTGATCCTTTAATATCAAATTTTGAGTAATATATT
Unaligned ( gi|7 ): AACTACTCAAGTGTTGATAAGGATCATAGATTTTTATCTGTTTTCAAGATTAATAACTTCATAACTGGGCAGTATTGTGTCCAAGTGAAAATAGAAAAAAAAAAGAAGCTTGCAACTTCAGTATTAGATAAAAGTATTCATGTCGTTCATAGAATTTTCAATTCATAATCATGAGTAAACACGTTTCTGAAGTCAAATTTATGTTTTTTGTTAATGTAGTGTAAATTACACTACATATAACTCGTGGATCCTTATCAAATTTTAGTAGTAT
Unaligned ( gi|8 ): TTGATAAGGAATGCATAATTTTTCATGTTTTCAAGATTAATATACTTCATACACTGCAATAATTAGTGTCCAAGTGAGCAATAAAATAAAAAAGCTTGCAAGCATTCCGTACTTGATAAAAGTTTCAATTGTCGTTCCATAGAAATTCATTCATAACCTGAGTAAAACACGTTCGAATGTCACATTATGTTTTTTTTAATTGTTAAGTGTGAATGATTCAGCACCATACTAACCTAGGATCCTTAGTCAAATTAGAGTTAAGTTATA
Unaligned ( gi|9 ): ACTACTCAAAATGTGATAAGGGTCATAGATCGTTTTCTTAATAATTGCATAACTGGCAATATTGTGTCTGTCCATGAAATGCCTCGGGTTATCAGATTCAACATTCCTTATGATAAACATTCAGGCCGTTCATGAATTCTCATCATAATTAACCTGAGTAACACGTTCTGAGTCAAATTTATGTCTTTGTTATGGTTAGTGGAAATACACACATATACCTAGTATCCTTATCAAATTGGAGTTAGTATATT
Unaligned ( gi|15 ): GATTGTCAGTTTTGTCAAAAAGCAATGATATCAGAGGGGGTCAGATGACACATTTTGGTCTTGAGAGAGATTTTAGGTACCGGGTATAAGATAGTTTTGTGAAACTGGCCCC
Unaligned ( gi|16 ): TCTTGAGATACGACATTTTAGTGAAAAAACTTCGATATGATCTTATCAGTAATTTTGGTCTTGAGACAGATTTTAGTCGCAATATACGTAAGTGAAACTGGCCCC
Unaligned ( gi|17 ): AGTTTTGTGAAAAAGCTATGACACATCTAAATGACAAATTTTGATCCTCAGGCAGATCTTAGTCGTCAGATAGTTTTGTGAAACTGGCCCC
Unaligned ( gi|19 ): CCGGCACTGTCCATATGGTCTATGGACTTGTTTTTCGACTTGAGGAATTCAGAAGTGAGCATGGCCATTTTTACCAAA
Unaligned ( gi|20 ): CAATATGACAGTTTTGTGAAACAGCTACGATAGATCTTATGACAAATTTTGATCTTAAGAGAGATCTTAGTC
Unaligned ( gi|22 ): CGAAACAGCCTAGCCTATGATAGATCTGCCTATTTGGACAAA
Alignments
lowQualScore : 7777777777777777777777 11 11 11 2222 6666666666666666666666 111111 1111111111 1 11 22222222 4444444444 11 222222222 11111111 111 2
lowQualScore : 1 0 3 4444444444444444444444 33 33 33 2 0 0 99 5555 0 3 1 99 7777777777777777777777 5 0 555555 6 0 99 6666666666 1 99 0 0 8 0 0 11 1 999 99999999 8888888888 33 77 33 2 222222222 0 22 222 2 99 77777777 5 111 5 3 8 0
lowQualScore : . . . ...................... .. .. .. . . . .. .... . . . .. ...................... . . ...... . . .. .......... . .. . . . . . .. . ... ........ .......... .. .. .. . ......... . .. ... . .. ........ . ... . . . .
lowQualScore : 0 2 2 0000000000000000000000 88 88 88 5 2 2 00 0000 8 8 0 22 6666666666666666666666 0 6 888888 7 8 22 8888888888 0 22 0 2 0 8 8 00 0 222 00000000 4444444444 66 99 33 7 999999999 3 99 666 5 22 55555555 2 777 7 0 0 0
consensus : CTATGAAAAAGAGGCCTGGGAGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATTT--GC--TCT--GGCGAGGAAA-T----AAAANAAAAAGTGGACGTGTTTGTCCAGTGAGAGCTAAAAA-----CGA--------------GCTAGCATTG-GTAATAGAG-AACAAAGCACTAAAACGGAG--AGCATTAA-TCACTCGCAGTG--AAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-GGTCTAATGGA--TTGTT--TCTGTNCCCG---------AAGATACGTTCCCTCCGGA--TGAGC-TG-CCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAGTTT-AGAC-TAAGACATGTACCT
Reference ( family-1211 ) : CTNTGAAAAAGAGGTCTGGGAGGAGATAGCAGATAAAGTCG---------CTAACC-------ATTT--GC--TCT--GGCGAGGAAN-T----AAAANAAAAAGTGGACGTGTNTGTCCAGTGAGAGCTAAAAG-----CGA--------------GCTAGCATCGNGTAATAGAG-AACAAAGCACTAAAACGGAG--AGCATTAA-TCACTCGCAGTG--AAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGGAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGANGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-GGTCTAATGGA--TTGTT--TCTGTCCCCG---------AAGATACGTTCCCTCCGGA--TGANC-TGTCCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAGTTT-AGAC-TAAGACATGTACCT
gi|1 : CTTTGAAAAAGAGGTCTAAGAGGAAATAGCAGAAAAAGTCGTTAATATGTCTAATC-------ATTTACGC--TCT--GGCGAGGAAA-TCTTTAA-----------------TATGTTCAGTGAGAGCTAAAAAACAAACGAAATAAAAAAAAAATGCTAGCATCG---AATAGAATAATAGAGCAC--------AA--AGCATAAAATCACTT----T----AGATGGTAGTGCATGTGGTCTTTTTAGTGGGGTGATCTAAAGGAATATTGAATTCGTCA-GAGAT--TAAAATCACGTGCAGTGG--AAGAATACATT-TGCCCA--------TATCCTCCATAT-----A----GTCTAATGAA--TTGTT--TCTGTTCTTG---------AAGATACGTTACCT-CGTA--TGAGC-TGTCTATTTTTTACCAA------ATA-GCCCGCCGCCATGTTAAATTC-AG
gi|10 : TA-TAGCGCCGCCATGTTAAGTTTAAGAC-TAAGACATGttgtatctgaatgtcgcaagattatcatataagatttgaaaattttgtgaaatag
gi|11 : CCATAT-----TTA-G---TAATGGAGTTTGTT--TCTGCCCCTG---------AAG-TACGT-CACTCCG-A--TGACC-T----ATTTCTTACCAAATT---ATACTG-CGCCGCCATGTTCAGTTT-AGACGTAAAACATGTACCTattgtatctggatgtcaattaaagatttagataatcttaagatatcataagattgacagttttgtgaaacagctgatgatagatcttatgacaaattttgatcgttaagaagacgttagtcataagatagattgtgaaatctggcccca
gi|12 : atacatgttcgtagctgAAAGAAATGTTGAGCTCGTCA-GAGATTAGAAGATCACGTGCCG-GG--GAGACGACA-C-TGCCTATACTATAGTAATGTCCATAT------T---GTCTAATGGA--TTGTT--TCTGAGACTGAAGATATTCAAGATACGTTCCCTCCGggatgtcgtaagacaaccttaaaattatcataaagaattga
gi|13 : cgCTGTGAAAAAGAGGCCTGGGGGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATCT--GC--TCT--A------AAT-TT---AAAATAAAAAGTGCACGTGTTTTTCCAGTGAGAGCAAAAAA-----CAA--------------GCTAGCATTACGTAATGGAG-AACAAAGC
gi|14 : AAT-T----AAAAAAGAAAGTTGACGTGTTTGTCCAGTCAGAGTTAACAG-----GGA--------------GCTCACATTGGGTAATAGAA-AACAAAACACTAAAACAGAG--AGCAATAG-TCACTTGCATTG--ACGTTGGTAGAGTATGAAA
gi|18 : tAAAT----TA-TGTCGCCGCCATGTTAAGTTT-AGAC-TAAGACA
gi|19 : TGTCCATAT---------GGTCT-ATGGAC-TTGTT--TTTCGACTTG---------AGGA-A-------TTCAGAAGTGAGCATGGCCATTT-TTACCAAAagctggacgtcttaagatttcaaaccatcttaagattatcactaagata
gi|2 : ccggcacCTATGAAAAAGAAGCCAGGGAGGAGATAACAGATAAAGTCGA--------CTAACTTATTAGTATTT--GC--TCCAAGGCGAGGAAA-T----AAAAAAAAAAGTGGACGTGTTTGTCTATTGAGAGC-AAAAA-----TAA--------------GGTAGCATTGAGTAATGGAG-AACAAAGCATTAAAACGGAG--AGCATTAA-TCACATGTAGTG--AAGTTGGTAGGGCATGAGAACTTTTT-TTGGGGTGTTCTAAAGAAATATTGCGCTCGTCA-TAGATTATAAGATCACTTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-AGTCTAATGGA--TTGTT--TCTGTCCCGG---------ATGATACGTTTTCACCGGA--TG---------------TACCAAAAT---ATA-TGCCGCCACCATGTTAAGTTT-AGACTTAAGACATGTATCT
gi|21 : GAG-AACAAAGCATTAAAACGGAG--AGCACT-------TC-CAGTG--AAGTTGGTAGAGCACGAGATCT
gi|3 : TATGAAAAAGATGTCTGGGATGAGATAGCAGATA--------------------C-------ATTT--GCGCTCT--GGCAAGAAAAGT----AAAACAAAAAGTGGACGTGTAAGTCCAGTGAGGG-TAAAAG-------A--------------G---GAA------AATAGAA-AATAAAGCACTAAAACGGGG--AGCATTAA-TCACTAGCAGTG--AAGTTGACAGAGCATGAGATCTTTTT-GTGGATTGCTCTAAAGGAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGAAGACA-CTTGCCCA--------TAATATTCATATCCTCCATATGGCCGAATGGA--TTGTTAAAATGTCCCCG--------------ACGTTCTCTCCAGA--TGATA-TATTCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAG
gi|6 : AAATGAAGCTAGCATTG-------CGTAATGGAAAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCATGAGATTATAAGATCACGTGCCGTGGTTCAGACGACA-C-TGCCCG--------TAATGTCCATAT-----A----GTCTAATGGA--TTGTT--TCTGTACTCG---------AAGATACGTTCCCTCCGGA--TGAGC-TGGCCATTTCTTACCAAAATATAATA-TGCCACCGCCATGTTAAGT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATATACTCAAAATTGACCCAAGGATCTTAGATCTTTTACGTTTAAAAATTAAAATCTGCCATAACCGAACAATATTGTGTCCCATGAAATGCGGCTTTTGGTGTTGTTGATCAGATTTCAGCATTCTGTATTGATAAAAAAGTGCCATGCCGTTTCAGATGAATTTTCCATTCATAACCTGTATACACAGCTTTCTGAGAGTCAAATTCTATGTCTTTTTATGTTAGTGGCTAACATACACACATATAACCTTAGTGATTCTTATAAATTTTGAGTAGAT
Unaligned ( gi|5 ): ATTACTACTCAAAATTTTATAGAGATATAGGTAGACTCTTTCTGTTTTAAACAAAGTAATAACTGGTAATATGGTGTCCAAGTGAAATCAAAAACGTCATCGACAAACTTCAAGCATTCTGTATTGATAAAAGTTCATGCCGTTCCCGAATTTTTATTCATAACCTGAGTAAACATGTTTCTGAGTCAGATTTATGTCTTTTGTTGTGTTAGTGGTAAATTACACACATACATGTATAACCTAGTGATCCTTTAATATCAAATTTTGAGTAATATATT
Unaligned ( gi|7 ): AACTACTCAAGTGTTGATAAGGATCATAGATTTTTATCTGTTTTCAAGATTAATAACTTCATAACTGGGCAGTATTGTGTCCAAGTGAAAATAGAAAAAAAAAAGAAGCTTGCAACTTCAGTATTAGATAAAAGTATTCATGTCGTTCATAGAATTTTCAATTCATAATCATGAGTAAACACGTTTCTGAAGTCAAATTTATGTTTTTTGTTAATGTAGTGTAAATTACACTACATATAACTCGTGGATCCTTATCAAATTTTAGTAGTAT
Unaligned ( gi|8 ): TTGATAAGGAATGCATAATTTTTCATGTTTTCAAGATTAATATACTTCATACACTGCAATAATTAGTGTCCAAGTGAGCAATAAAATAAAAAAGCTTGCAAGCATTCCGTACTTGATAAAAGTTTCAATTGTCGTTCCATAGAAATTCATTCATAACCTGAGTAAAACACGTTCGAATGTCACATTATGTTTTTTTTAATTGTTAAGTGTGAATGATTCAGCACCATACTAACCTAGGATCCTTAGTCAAATTAGAGTTAAGTTATA
Unaligned ( gi|9 ): ACTACTCAAAATGTGATAAGGGTCATAGATCGTTTTCTTAATAATTGCATAACTGGCAATATTGTGTCTGTCCATGAAATGCCTCGGGTTATCAGATTCAACATTCCTTATGATAAACATTCAGGCCGTTCATGAATTCTCATCATAATTAACCTGAGTAACACGTTCTGAGTCAAATTTATGTCTTTGTTATGGTTAGTGGAAATACACACATATACCTAGTATCCTTATCAAATTGGAGTTAGTATATT
Unaligned ( gi|15 ): GATTGTCAGTTTTGTCAAAAAGCAATGATATCAGAGGGGGTCAGATGACACATTTTGGTCTTGAGAGAGATTTTAGGTACCGGGTATAAGATAGTTTTGTGAAACTGGCCCC
Unaligned ( gi|16 ): TCTTGAGATACGACATTTTAGTGAAAAAACTTCGATATGATCTTATCAGTAATTTTGGTCTTGAGACAGATTTTAGTCGCAATATACGTAAGTGAAACTGGCCCC
Unaligned ( gi|17 ): AGTTTTGTGAAAAAGCTATGACACATCTAAATGACAAATTTTGATCCTCAGGCAGATCTTAGTCGTCAGATAGTTTTGTGAAACTGGCCCC
Unaligned ( gi|20 ): CAATATGACAGTTTTGTGAAACAGCTACGATAGATCTTATGACAAATTTTGATCTTAAGAGAGATCTTAGTC
Unaligned ( gi|22 ): CGAAACAGCCTAGCCTATGATAGATCTGCCTATTTGGACAAA
Alignments
lowQualScore : 5555555555555555555555 11 11 111 11 11 66666666666666666666666 2222 1111111111 1 11 22222222 4444444444 11 222222222 333333333 111 2
lowQualScore : 1 0 3 3333333333333333333333 33 33 666 0 0 99 11 1 3 1 99 11111111111111111111111 5 0 8888 6 0 99 6666666666 1 99 0 0 8 0 0 11 999 99999999 8888888888 33 77 11 2 222222222 0 22 222 2 99 666666666 5 111 5 3 8 0
lowQualScore : . . . ...................... .. .. ... . . .. .. . . . .. ....................... . . .... . . .. .......... . .. . . . . . .. ... ........ .......... .. .. .. . ......... . .. ... . .. ......... . ... . . . .
lowQualScore : 2 2 2 8888888888888888888888 88 88 222 2 2 00 00 0 8 0 22 44444444444444444444444 0 6 2222 7 8 22 8888888888 0 22 0 2 0 8 8 00 222 00000000 4444444444 66 99 33 7 999999999 3 99 666 5 22 333333333 2 777 7 0 0 0
consensus : CTATGAAAAAGAGGCCTGGGAGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATTT--GC--TCT--GGCGAGGAAA--TAA--AANAAAAAGTGGACGTGTTTGTCCAGTGAGAGCTAAAAA-----CGA--------------GCTAGCATTG-G-TAATAGAG-AACAAAGCACTAAAACGGAG--AGCATTAA-TCACTCGCAGTG--AAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-GGTCTAATGGA--TTGTT--TCTGTNCCCG---------AAGATACGTTCCCTCCGGA--TGAGC-T-G-CCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAGTTT-AGAC-TAAGACATGTACCT
Reference ( family-1211 ) : CTATGAAAAAGAGGCCTGGGAGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATTT--GC--TCT--GGCGAGGAAA--TAA--AANAAAAAGTGGACGTGTTTGTCCAGTGAGAGCTAAAAA-----CGA--------------GCTAGCATTG-G-TAATAGAG-AACAAAGCACTAAAACGGAG--AGCATTAA-TCACTCGCAGTG--AAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-GGTCTAATGGA--TTGTT--TCTGTNCCCG---------AAGATACGTTCCCTCCGGA--TGAGC-T-G-CCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAGTTT-AGAC-TAAGACATGTACCT
gi|1 : CTTTGAAAAAGAGGTCTAAGAGGAAATAGCAGAAAAAGTCGTTAATATGTCTAATC-------ATTTACGC--TCT--GGCGAGGAAA--TCTTTAATA---------------TGTTCAGTGAGAGCTAAAAAACAAACGAAATAAAAAAAAAATGCTAGCATCG----AATAGAATAATAGAGCAC--------AA--AGCATAAAATCACTT----T----AGATGGTAGTGCATGTGGTCTTTTTAGTGGGGTGATCTAAAGGAATATTGAATTCGTCA-GAGAT--TAAAATCACGTGCAGTGG--AAGAATACATT-TGCCCA--------TATCCTCCATAT-----A----GTCTAATGAA--TTGTT--TCTGTTCTTG---------AAGATACGTTACCT-CGTA--TGAGC-T-GTCTATTTTTTACCAA------ATA-GCCCGCCGCCATGTTAAATTC-AG
gi|10 : TA-TAGCGCCGCCATGTTAAGTTTAAGAC-TAAGACATGttgtatctgaatgtcgcaagattatcatataagatttgaaaattttgtgaaatag
gi|11 : CCATAT-----TTA-G---TAATGGAGTTTGTT--TCTGCCCCTG---------AAG-TACGT-CACTCCG-A--TGACC-T-----ATTTCTTACCAAATT---ATACTG-CGCCGCCATGTTCAGTTT-AGACGTAAAACATGTACCTattgtatctggatgtcaattaaagatttagataatcttaagatatcataagattgacagttttgtgaaacagctgatgatagatcttatgacaaattttgatcgttaagaagacgttagtcataagatagattgtgaaatctggcccca
gi|12 : atacatgttcgtagctgAAAGAAATGTTGAGCTCGTCA-GAGATTAGAAGATCACGTGCCG-GG--GAGACGACA-C-TGCCTATACTATAGTAATGTCCATAT------T---GTCTAATGGA--TTGTT--TCTGAGACTGAAGATATTCAAGATACGTTCCCTCCGggatgtcgtaagacaaccttaaaattatcataaagaattga
gi|13 : cgCTGTGAAAAAGAGGCCTGGGGGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATCT--GC--TCT---------AAATTTAA--AATAAAAAGTGCACGTGTTTTTCCAGTGAGAGCAAAAAA-----CAA--------------GCTAGCATTACG-TAATGGAG-AACAAAGC
gi|14 : AAT--TAA--AAAAGAAAGTTGACGTGTTTGTCCAGTCAGAGTTAACAG-----GGA--------------GCTCACATTG-GGTAATAGAA-AACAAAACACTAAAACAGAG--AGCAATAG-TCACTTGCATTG--ACGTTGGTAGAGTATGAAA
gi|18 : tAAAT----TA-TGTCGCCGCCATGTTAAGTTT-AGAC-TAAGACA
gi|19 : TGTCCATAT---------GGTCT-ATGGAC-TTGTT--TTTCGACTTG---------AGGA-A-------TTCAGAAGTGAGCATGG-CCATTT-TTACCAAAagctggacgtcttaagatttcaaaccatcttaagattatcactaagata
gi|2 : ccggcacCTATGAAAAAGAAGCCAGGGAGGAGATAACAGATAAAGTCGA--------CTAACTTATTAGTATTT--GC--TCCAAGGCGAGGAAA--TAA--AAAAAAAAGTGGACGTGTTTGTCTATTGAGAGC-AAAAA-----TAA--------------GGTAGCATTGAG-TAATGGAG-AACAAAGCATTAAAACGGAG--AGCATTAA-TCACATGTAGTG--AAGTTGGTAGGGCATGAGAACTTTTT-TTGGGGTGTTCTAAAGAAATATTGCGCTCGTCA-TAGATTATAAGATCACTTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-AGTCTAATGGA--TTGTT--TCTGTCCCGG---------ATGATACGTTTTCACCGGA--TG----------------TACCAAAAT---ATA-TGCCGCCACCATGTTAAGTTT-AGACTTAAGACATGTATCT
gi|21 : GAG-AACAAAGCATTAAAACGGAG--AGCACT-------TC-CAGTG--AAGTTGGTAGAGCACGAGATCT
gi|3 : TATGAAAAAGATGTCTGGGATGAGATAGCAGATA--------------------C-------ATTT--GCGCTCT--GGCAAGAAAAG-TAA--AACAAAAAGTGGACGTGTAAGTCCAGTGAGGG-TAAAA-------GA--------------G--------G-A-AAATAGAA-AATAAAGCACTAAAACGGGG--AGCATTAA-TCACTAGCAGTG--AAGTTGACAGAGCATGAGATCTTTTT-GTGGATTGCTCTAAAGGAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGAAGACA-CTTGCCCA--------TAATATTCATATCCTCCATATGGCCGAATGGA--TTGTTAAAATGTCCCCG--------------ACGTTCTCTCCAGA--TGATA-T-ATTCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAG
gi|6 : AAATGAAGCTAGCATTG-------CGTAATGGAAAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCATGAGATTATAAGATCACGTGCCGTGGTTCAGACGACA-C-TGCCCG--------TAATGTCCATAT-----A----GTCTAATGGA--TTGTT--TCTGTACTCG---------AAGATACGTTCCCTCCGGA--TGAGC-TGG-CCATTTCTTACCAAAATATAATA-TGCCACCGCCATGTTAAGT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATATACTCAAAATTGACCCAAGGATCTTAGATCTTTTACGTTTAAAAATTAAAATCTGCCATAACCGAACAATATTGTGTCCCATGAAATGCGGCTTTTGGTGTTGTTGATCAGATTTCAGCATTCTGTATTGATAAAAAAGTGCCATGCCGTTTCAGATGAATTTTCCATTCATAACCTGTATACACAGCTTTCTGAGAGTCAAATTCTATGTCTTTTTATGTTAGTGGCTAACATACACACATATAACCTTAGTGATTCTTATAAATTTTGAGTAGAT
Unaligned ( gi|5 ): ATTACTACTCAAAATTTTATAGAGATATAGGTAGACTCTTTCTGTTTTAAACAAAGTAATAACTGGTAATATGGTGTCCAAGTGAAATCAAAAACGTCATCGACAAACTTCAAGCATTCTGTATTGATAAAAGTTCATGCCGTTCCCGAATTTTTATTCATAACCTGAGTAAACATGTTTCTGAGTCAGATTTATGTCTTTTGTTGTGTTAGTGGTAAATTACACACATACATGTATAACCTAGTGATCCTTTAATATCAAATTTTGAGTAATATATT
Unaligned ( gi|7 ): AACTACTCAAGTGTTGATAAGGATCATAGATTTTTATCTGTTTTCAAGATTAATAACTTCATAACTGGGCAGTATTGTGTCCAAGTGAAAATAGAAAAAAAAAAGAAGCTTGCAACTTCAGTATTAGATAAAAGTATTCATGTCGTTCATAGAATTTTCAATTCATAATCATGAGTAAACACGTTTCTGAAGTCAAATTTATGTTTTTTGTTAATGTAGTGTAAATTACACTACATATAACTCGTGGATCCTTATCAAATTTTAGTAGTAT
Unaligned ( gi|8 ): TTGATAAGGAATGCATAATTTTTCATGTTTTCAAGATTAATATACTTCATACACTGCAATAATTAGTGTCCAAGTGAGCAATAAAATAAAAAAGCTTGCAAGCATTCCGTACTTGATAAAAGTTTCAATTGTCGTTCCATAGAAATTCATTCATAACCTGAGTAAAACACGTTCGAATGTCACATTATGTTTTTTTTAATTGTTAAGTGTGAATGATTCAGCACCATACTAACCTAGGATCCTTAGTCAAATTAGAGTTAAGTTATA
Unaligned ( gi|9 ): ACTACTCAAAATGTGATAAGGGTCATAGATCGTTTTCTTAATAATTGCATAACTGGCAATATTGTGTCTGTCCATGAAATGCCTCGGGTTATCAGATTCAACATTCCTTATGATAAACATTCAGGCCGTTCATGAATTCTCATCATAATTAACCTGAGTAACACGTTCTGAGTCAAATTTATGTCTTTGTTATGGTTAGTGGAAATACACACATATACCTAGTATCCTTATCAAATTGGAGTTAGTATATT
Unaligned ( gi|15 ): GATTGTCAGTTTTGTCAAAAAGCAATGATATCAGAGGGGGTCAGATGACACATTTTGGTCTTGAGAGAGATTTTAGGTACCGGGTATAAGATAGTTTTGTGAAACTGGCCCC
Unaligned ( gi|16 ): TCTTGAGATACGACATTTTAGTGAAAAAACTTCGATATGATCTTATCAGTAATTTTGGTCTTGAGACAGATTTTAGTCGCAATATACGTAAGTGAAACTGGCCCC
Unaligned ( gi|17 ): AGTTTTGTGAAAAAGCTATGACACATCTAAATGACAAATTTTGATCCTCAGGCAGATCTTAGTCGTCAGATAGTTTTGTGAAACTGGCCCC
Unaligned ( gi|20 ): CAATATGACAGTTTTGTGAAACAGCTACGATAGATCTTATGACAAATTTTGATCTTAAGAGAGATCTTAGTC
Unaligned ( gi|22 ): CGAAACAGCCTAGCCTATGATAGATCTGCCTATTTGGACAAA
Alignments
lowQualScore : 5555555555555555555555 11 11 111 11 11 66666666666666666666666 2222 1111111111 1 11 22222222 4444444444 11 222222222 333333333 111 2
lowQualScore : 1 0 3 3333333333333333333333 33 33 666 0 0 99 11 1 3 1 99 11111111111111111111111 5 0 8888 6 0 99 6666666666 1 99 0 0 8 0 0 11 999 99999999 8888888888 33 77 11 2 222222222 0 22 222 2 99 666666666 5 111 5 3 8 0
lowQualScore : . . . ...................... .. .. ... . . .. .. . . . .. ....................... . . .... . . .. .......... . .. . . . . . .. ... ........ .......... .. .. .. . ......... . .. ... . .. ......... . ... . . . .
lowQualScore : 2 2 2 8888888888888888888888 88 88 222 2 2 00 00 0 8 0 22 44444444444444444444444 0 6 2222 7 8 22 8888888888 0 22 0 2 0 8 8 00 222 00000000 4444444444 66 99 33 7 999999999 3 99 666 5 22 333333333 2 777 7 0 0 0
consensus : CTATGAAAAAGAGGCCTGGGAGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATTT--GC--TCT--GGCGAGGAAA--TAA--AANAAAAAGTGGACGTGTTTGTCCAGTGAGAGCTAAAAA-----CGA--------------GCTAGCATTG-G-TAATAGAG-AACAAAGCACTAAAACGGAG--AGCATTAA-TCACTCGCAGTG--AAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-GGTCTAATGGA--TTGTT--TCTGTNCCCG---------AAGATACGTTCCCTCCGGA--TGAGC-T-G-CCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAGTTT-AGAC-TAAGACATGTACCT
Reference ( family-1211 ) : CTATGAAAAAGAGGCCTGGGAGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATTT--GC--TCT--GGCGAGGAAA--TAA--AANAAAAAGTGGACGTGTTTGTCCAGTGAGAGCTAAAAA-----CGA--------------GCTAGCATTG-G-TAATAGAG-AACAAAGCACTAAAACGGAG--AGCATTAA-TCACTCGCAGTG--AAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-GGTCTAATGGA--TTGTT--TCTGTNCCCG---------AAGATACGTTCCCTCCGGA--TGAGC-T-G-CCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAGTTT-AGAC-TAAGACATGTACCT
gi|1 : CTTTGAAAAAGAGGTCTAAGAGGAAATAGCAGAAAAAGTCGTTAATATGTCTAATC-------ATTTACGC--TCT--GGCGAGGAAA--TCTTTAATA---------------TGTTCAGTGAGAGCTAAAAAACAAACGAAATAAAAAAAAAATGCTAGCATCG----AATAGAATAATAGAGCAC--------AA--AGCATAAAATCACTT----T----AGATGGTAGTGCATGTGGTCTTTTTAGTGGGGTGATCTAAAGGAATATTGAATTCGTCA-GAGAT--TAAAATCACGTGCAGTGG--AAGAATACATT-TGCCCA--------TATCCTCCATAT-----A----GTCTAATGAA--TTGTT--TCTGTTCTTG---------AAGATACGTTACCT-CGTA--TGAGC-T-GTCTATTTTTTACCAA------ATA-GCCCGCCGCCATGTTAAATTC-AG
gi|10 : TA-TAGCGCCGCCATGTTAAGTTTAAGAC-TAAGACATGttgtatctgaatgtcgcaagattatcatataagatttgaaaattttgtgaaatag
gi|11 : CCATAT-----TTA-G---TAATGGAGTTTGTT--TCTGCCCCTG---------AAG-TACGT-CACTCCG-A--TGACC-T-----ATTTCTTACCAAATT---ATACTG-CGCCGCCATGTTCAGTTT-AGACGTAAAACATGTACCTattgtatctggatgtcaattaaagatttagataatcttaagatatcataagattgacagttttgtgaaacagctgatgatagatcttatgacaaattttgatcgttaagaagacgttagtcataagatagattgtgaaatctggcccca
gi|12 : atacatgttcgtagctgAAAGAAATGTTGAGCTCGTCA-GAGATTAGAAGATCACGTGCCG-GG--GAGACGACA-C-TGCCTATACTATAGTAATGTCCATAT------T---GTCTAATGGA--TTGTT--TCTGAGACTGAAGATATTCAAGATACGTTCCCTCCGggatgtcgtaagacaaccttaaaattatcataaagaattga
gi|13 : cgCTGTGAAAAAGAGGCCTGGGGGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATCT--GC--TCT---------AAATTTAA--AATAAAAAGTGCACGTGTTTTTCCAGTGAGAGCAAAAAA-----CAA--------------GCTAGCATTACG-TAATGGAG-AACAAAGC
gi|14 : AAT--TAA--AAAAGAAAGTTGACGTGTTTGTCCAGTCAGAGTTAACAG-----GGA--------------GCTCACATTG-GGTAATAGAA-AACAAAACACTAAAACAGAG--AGCAATAG-TCACTTGCATTG--ACGTTGGTAGAGTATGAAA
gi|18 : tAAAT----TA-TGTCGCCGCCATGTTAAGTTT-AGAC-TAAGACA
gi|19 : TGTCCATAT---------GGTCT-ATGGAC-TTGTT--TTTCGACTTG---------AGGA-A-------TTCAGAAGTGAGCATGG-CCATTT-TTACCAAAagctggacgtcttaagatttcaaaccatcttaagattatcactaagata
gi|2 : ccggcacCTATGAAAAAGAAGCCAGGGAGGAGATAACAGATAAAGTCGA--------CTAACTTATTAGTATTT--GC--TCCAAGGCGAGGAAA--TAA--AAAAAAAAGTGGACGTGTTTGTCTATTGAGAGC-AAAAA-----TAA--------------GGTAGCATTGAG-TAATGGAG-AACAAAGCATTAAAACGGAG--AGCATTAA-TCACATGTAGTG--AAGTTGGTAGGGCATGAGAACTTTTT-TTGGGGTGTTCTAAAGAAATATTGCGCTCGTCA-TAGATTATAAGATCACTTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-AGTCTAATGGA--TTGTT--TCTGTCCCGG---------ATGATACGTTTTCACCGGA--TG----------------TACCAAAAT---ATA-TGCCGCCACCATGTTAAGTTT-AGACTTAAGACATGTATCT
gi|21 : GAG-AACAAAGCATTAAAACGGAG--AGCACT-------TC-CAGTG--AAGTTGGTAGAGCACGAGATCT
gi|3 : TATGAAAAAGATGTCTGGGATGAGATAGCAGATA--------------------C-------ATTT--GCGCTCT--GGCAAGAAAAG-TAA--AACAAAAAGTGGACGTGTAAGTCCAGTGAGGG-TAAAA-------GA--------------G--------G-A-AAATAGAA-AATAAAGCACTAAAACGGGG--AGCATTAA-TCACTAGCAGTG--AAGTTGACAGAGCATGAGATCTTTTT-GTGGATTGCTCTAAAGGAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGAAGACA-CTTGCCCA--------TAATATTCATATCCTCCATATGGCCGAATGGA--TTGTTAAAATGTCCCCG--------------ACGTTCTCTCCAGA--TGATA-T-ATTCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAG
gi|6 : AAATGAAGCTAGCATTG-------CGTAATGGAAAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCATGAGATTATAAGATCACGTGCCGTGGTTCAGACGACA-C-TGCCCG--------TAATGTCCATAT-----A----GTCTAATGGA--TTGTT--TCTGTACTCG---------AAGATACGTTCCCTCCGGA--TGAGC-TGG-CCATTTCTTACCAAAATATAATA-TGCCACCGCCATGTTAAGT
blockSeqs : G A ACTAACTTATTAGT . GC AAG TT . T A T CA ACAA C CGT . CT AGTCACTTG T GA . T TT CT TACTATAG CCTCCATATG GT AA CC T AAGATATTC AT TCC G AG GCATGGCC C ATA C G A G
blockSeqs : A A TCTAACC . . G G . A G T TT GGGA C GGT . . AATCACATG G . . . . C . TTAG C . AG T . AT TTT G . TATATTC C . . T . T
blockSeqs : A . C . . . . . A A T C ATAA G AGT . . AATCACTAG G . . . . C . ATAA . . GA T . AT TCT G . GCTGGCC C . . C . .
blockSeqs : . . C A A T GA . AA . . GCG G . . . C . T . . TC G . T TCC G . CCT . . . C .
blockSeqs : . . TC A . G . . TC C . A CA . . . . . . C
blockSeqs : A . . TA C . . . . .
blockSeqCons : ** ANAA******************* NGT* C**
originalCons : CTATGAAAAAGAGGCCTGGGAGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATTT--GC--TCT--GGCGAGGAAA--TAA--AANAAAAAGTGGACGTGTTTGTCCAGTGAGAGCTAAAAA-----CGA--------------GCTAGCATTG-G-TAATAGAG-AACAAAGCACTAAAACGGAG--AGCATTAA-TCACTCGCAGTG--AAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-GGTCTAATGGA--TTGTT--TCTGTNCCCG---------AAGATACGTTCCCTCCGGA--TGAGC-T-G-CCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAGTTT-AGAC-TAAGACATGTACCT
finalCons : CTATGAAAAAGAGGCCTGGGAGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATTT--GC--TCT--GGCGAGGAAA--TAA--AANAAAAAGTGGACGTGTTTGTCCAGTGAGAGCTAAAAANAA-------------------GCTAGCATTGNGT-AATAGAG-AACAAAGCACTAAAACGGAG--AGCATTAA-TCACTCGCAGTG--AAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGACGACAC--TGCCCA--------TAATGTCCATAT-----ATA-GGTCTAATGGA--TTGTT--TCTGTNCCCG---------AAGATACGTTCCCTCCGGA--TGAGC-T-G-CCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAGTTT-AGAC-TAAGACATGTACCT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATATACTCAAAATTGACCCAAGGATCTTAGATCTTTTACGTTTAAAAATTAAAATCTGCCATAACCGAACAATATTGTGTCCCATGAAATGCGGCTTTTGGTGTTGTTGATCAGATTTCAGCATTCTGTATTGATAAAAAAGTGCCATGCCGTTTCAGATGAATTTTCCATTCATAACCTGTATACACAGCTTTCTGAGAGTCAAATTCTATGTCTTTTTATGTTAGTGGCTAACATACACACATATAACCTTAGTGATTCTTATAAATTTTGAGTAGAT
Unaligned ( gi|5 ): ATTACTACTCAAAATTTTATAGAGATATAGGTAGACTCTTTCTGTTTTAAACAAAGTAATAACTGGTAATATGGTGTCCAAGTGAAATCAAAAACGTCATCGACAAACTTCAAGCATTCTGTATTGATAAAAGTTCATGCCGTTCCCGAATTTTTATTCATAACCTGAGTAAACATGTTTCTGAGTCAGATTTATGTCTTTTGTTGTGTTAGTGGTAAATTACACACATACATGTATAACCTAGTGATCCTTTAATATCAAATTTTGAGTAATATATT
Unaligned ( gi|7 ): AACTACTCAAGTGTTGATAAGGATCATAGATTTTTATCTGTTTTCAAGATTAATAACTTCATAACTGGGCAGTATTGTGTCCAAGTGAAAATAGAAAAAAAAAAGAAGCTTGCAACTTCAGTATTAGATAAAAGTATTCATGTCGTTCATAGAATTTTCAATTCATAATCATGAGTAAACACGTTTCTGAAGTCAAATTTATGTTTTTTGTTAATGTAGTGTAAATTACACTACATATAACTCGTGGATCCTTATCAAATTTTAGTAGTAT
Unaligned ( gi|8 ): TTGATAAGGAATGCATAATTTTTCATGTTTTCAAGATTAATATACTTCATACACTGCAATAATTAGTGTCCAAGTGAGCAATAAAATAAAAAAGCTTGCAAGCATTCCGTACTTGATAAAAGTTTCAATTGTCGTTCCATAGAAATTCATTCATAACCTGAGTAAAACACGTTCGAATGTCACATTATGTTTTTTTTAATTGTTAAGTGTGAATGATTCAGCACCATACTAACCTAGGATCCTTAGTCAAATTAGAGTTAAGTTATA
Unaligned ( gi|9 ): ACTACTCAAAATGTGATAAGGGTCATAGATCGTTTTCTTAATAATTGCATAACTGGCAATATTGTGTCTGTCCATGAAATGCCTCGGGTTATCAGATTCAACATTCCTTATGATAAACATTCAGGCCGTTCATGAATTCTCATCATAATTAACCTGAGTAACACGTTCTGAGTCAAATTTATGTCTTTGTTATGGTTAGTGGAAATACACACATATACCTAGTATCCTTATCAAATTGGAGTTAGTATATT
Unaligned ( gi|15 ): GATTGTCAGTTTTGTCAAAAAGCAATGATATCAGAGGGGGTCAGATGACACATTTTGGTCTTGAGAGAGATTTTAGGTACCGGGTATAAGATAGTTTTGTGAAACTGGCCCC
Unaligned ( gi|16 ): TCTTGAGATACGACATTTTAGTGAAAAAACTTCGATATGATCTTATCAGTAATTTTGGTCTTGAGACAGATTTTAGTCGCAATATACGTAAGTGAAACTGGCCCC
Unaligned ( gi|17 ): AGTTTTGTGAAAAAGCTATGACACATCTAAATGACAAATTTTGATCCTCAGGCAGATCTTAGTCGTCAGATAGTTTTGTGAAACTGGCCCC
Unaligned ( gi|20 ): CAATATGACAGTTTTGTGAAACAGCTACGATAGATCTTATGACAAATTTTGATCTTAAGAGAGATCTTAGTC
Unaligned ( gi|22 ): CGAAACAGCCTAGCCTATGATAGATCTGCCTATTTGGACAAA
Alignments
lowQualScore : 5555555555555555555555 11 11 111 111111 1 555555555555555555 111 1111111111 1 11 22222222 4444444444 11 222222222 333333333 111 2
lowQualScore : 1 0 3 3333333333333333333333 33 33 666 0 0 8 444444 1 3 1 5 999999999999999999 1 8 5 222 6 0 99 6666666666 1 99 0 0 8 0 0 11 999 99999999 8888888888 33 77 11 2 222222222 0 22 5 0 2 99 666666666 5 111 5 3 8 0
lowQualScore : . . . ...................... .. .. ... . . . ...... . . . . .................. . . . ... . . .. .......... . .. . . . . . .. ... ........ .......... .. .. .. . ......... . .. . . . .. ......... . ... . . . .
lowQualScore : 2 2 2 8888888888888888888888 88 88 222 2 2 0 000000 0 8 0 8 000000000000000000 0 0 0 222 7 8 22 8888888888 0 22 0 2 0 8 8 00 222 00000000 4444444444 66 99 33 7 999999999 3 99 3 7 5 22 333333333 2 777 7 0 0 0
consensus : CTATGAAAAAGAGGCCTGGGAGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATTT--GC--TCT--GGCGAGGAAA-T--AA--AANAAAAAGTGGACGTGTTTGTCCAGTGAGAGCTAAAA------------------ANAA-GCTAGCATTG-GTAATAGAG-AACAAAGCACTAAAACGGAG--AGCATTAA-TCACTCGCAGTG--AAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-GGTCTAATGGA--TTGTT--TCTGTNCCCG---------AAGATACGTTCCCTCCGGA--TGAGC-T-G-CCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAGTTT-AGAC-TAAGACATGTACCT
Reference ( family-1211 ) : CTATGAAAAAGAGGCCTGGGAGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATTT--GC--TCT--GGCGAGGAAA-T--AA--AANAAAAAGTGGACGTGTTTGTCCAGTGAGAGCTAAAA------------------ANAA-GCTAGCATTGNGTAATAGAG-AACAAAGCACTAAAACGGAG--AGCATTAA-TCACTCGCAGTG--AAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-GGTCTAATGGA--TTGTT--TCTGTNCCCG---------AAGATACGTTCCCTCCGGA--TGAGC-T-G-CCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAGTTT-AGAC-TAAGACATGTACCT
gi|1 : CTTTGAAAAAGAGGTCTAAGAGGAAATAGCAGAAAAAGTCGTTAATATGTCTAATC-------ATTTACGC--TCT--GGCGAGGAAA-T--CTTTAATA---------------TGTTCAGTGAGAGCTAAAAAACAAACGAAATAAAAAAAAAATGCTAGCATCG---AATAGAATAATAGAGCAC--------AA--AGCATAAAATCACTT----T----AGATGGTAGTGCATGTGGTCTTTTTAGTGGGGTGATCTAAAGGAATATTGAATTCGTCA-GAGAT--TAAAATCACGTGCAGTGG--AAGAATACATT-TGCCCA--------TATCCTCCATAT-----A----GTCTAATGAA--TTGTT--TCTGTTCTTG---------AAGATACGTTACCT-CGTA--TGAGC-T-GTCTATTTTTTACCAA------ATA-GCCCGCCGCCATGTTAAATTC-AG
gi|10 : TA-TAGCGCCGCCATGTTAAGTTTAAGAC-TAAGACATGttgtatctgaatgtcgcaagattatcatataagatttgaaaattttgtgaaatag
gi|11 : CCATAT-----TTA-G---TAATGGAGTTTGTT--TCTGCCCCTG---------AAG-TACGT-CACTCCG-A--TGACC-T-----ATTTCTTACCAAATT---ATACTG-CGCCGCCATGTTCAGTTT-AGACGTAAAACATGTACCTattgtatctggatgtcaattaaagatttagataatcttaagatatcataagattgacagttttgtgaaacagctgatgatagatcttatgacaaattttgatcgttaagaagacgttagtcataagatagattgtgaaatctggcccca
gi|12 : atacatgttcgtagctgAAAGAAATGTTGAGCTCGTCA-GAGATTAGAAGATCACGTGCCG-GG--GAGACGACA-C-TGCCTATACTATAGTAATGTCCATAT------T---GTCTAATGGA--TTGTT--TCTGAGACTGAAGATATTCAAGATACGTTCCCTCCGggatgtcgtaagacaaccttaaaattatcataaagaattga
gi|13 : cgCTGTGAAAAAGAGGCCTGGGGGGAGATAGCAGATAAAGTCGT--------CTAACC-------ATCT--GC--TCT---------AAA-TTTAA--AATAAAAAGTGCACGTGTTTTTCCAGTGAGAGCAAAAA------------------ACAA-GCTAGCATTACGTAATGGAG-AACAAAGC
gi|14 : AAT-T--AA--AAAAGAAAGTTGACGTGTTTGTCCAGTCAGAGTTAACA------------------GGGA-GCTCACATTGGGTAATAGAA-AACAAAACACTAAAACAGAG--AGCAATAG-TCACTTGCATTG--ACGTTGGTAGAGTATGAAA
gi|18 : tAAAT----TA-TGTCGCCGCCATGTTAAGTTT-AGAC-TAAGACA
gi|19 : TGTCCATAT---------GGTCTA-TGGAC-TTGTT--TTTCGACTTG---------AGGA---ATTC-----AGAAGTGAGCAT-GGCCATTT-TTACCAAAagctggacgtcttaagatttcaaaccatcttaagattatcactaagata
gi|2 : ccggcacCTATGAAAAAGAAGCCAGGGAGGAGATAACAGATAAAGTCGA--------CTAACTTATTAGTATTT--GC--TCCAAGGCGAGGAAA-T--AA--AAAAAAAAGTGGACGTGTTTGTCTATTGAGAGC-AAAA------------------ATAA-GGTAGCATTGAGTAATGGAG-AACAAAGCATTAAAACGGAG--AGCATTAA-TCACATGTAGTG--AAGTTGGTAGGGCATGAGAACTTTTT-TTGGGGTGTTCTAAAGAAATATTGCGCTCGTCA-TAGATTATAAGATCACTTGCCGTGG--AAGACGACA-C-TGCCCA--------TAATGTCCATAT-----ATA-AGTCTAATGGA--TTGTT--TCTGTCCCGG---------ATGATACGTTTTCACCGGA--TG----------------TACCAAAAT---ATA-TGCCGCCACCATGTTAAGTTT-AGACTTAAGACATGTATCT
gi|21 : GAG-AACAAAGCATTAAAACGGAG--AGCACT-------TC-CAGTG--AAGTTGGTAGAGCACGAGATCT
gi|3 : TATGAAAAAGATGTCTGGGATGAGATAGCAGATA--------------------C-------ATTT--GCGCTCT--GGCAAGAAAAGT--AA--AACAAAAAGTGGACGTGTAAGTCCAGTGAGGGT--AAA------------------AGAG-G--AA--------AATAGAA-AATAAAGCACTAAAACGGGG--AGCATTAA-TCACTAGCAGTG--AAGTTGACAGAGCATGAGATCTTTTT-GTGGATTGCTCTAAAGGAATATTGAGCTCGTCA-GAGATTATAAGATCACGTGCCGTGG--AAGAAGACA-CTTGCCCA--------TAATATTCATATCCTCCATATGGCCGAATGGA--TTGTTAAAATGTCCCCG--------------ACGTTCTCTCCAGA--TGATA-T-ATTCATTTCTTACCAAAAT---ATA-TGCCGCCGCCATGTTAAG
gi|6 : AAATGAAGCTAGCATTG-------CGTAATGGAAAGTTGGTAGAGCATGAGATCTTTTT-GTGGGGTGCTCTAAAGAAATATTGAGCTCGTCATGAGATTATAAGATCACGTGCCGTGGTTCAGACGACA-C-TGCCCG--------TAATGTCCATAT-----A----GTCTAATGGA--TTGTT--TCTGTACTCG---------AAGATACGTTCCCTCCGGA--TGAGC-TGG-CCATTTCTTACCAAAATATAATA-TGCCACCGCCATGTTAAGT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATATACTCAAAATTGACCCAAGGATCTTAGATCTTTTACGTTTAAAAATTAAAATCTGCCATAACCGAACAATATTGTGTCCCATGAAATGCGGCTTTTGGTGTTGTTGATCAGATTTCAGCATTCTGTATTGATAAAAAAGTGCCATGCCGTTTCAGATGAATTTTCCATTCATAACCTGTATACACAGCTTTCTGAGAGTCAAATTCTATGTCTTTTTATGTTAGTGGCTAACATACACACATATAACCTTAGTGATTCTTATAAATTTTGAGTAGAT
Unaligned ( gi|5 ): ATTACTACTCAAAATTTTATAGAGATATAGGTAGACTCTTTCTGTTTTAAACAAAGTAATAACTGGTAATATGGTGTCCAAGTGAAATCAAAAACGTCATCGACAAACTTCAAGCATTCTGTATTGATAAAAGTTCATGCCGTTCCCGAATTTTTATTCATAACCTGAGTAAACATGTTTCTGAGTCAGATTTATGTCTTTTGTTGTGTTAGTGGTAAATTACACACATACATGTATAACCTAGTGATCCTTTAATATCAAATTTTGAGTAATATATT
Unaligned ( gi|7 ): AACTACTCAAGTGTTGATAAGGATCATAGATTTTTATCTGTTTTCAAGATTAATAACTTCATAACTGGGCAGTATTGTGTCCAAGTGAAAATAGAAAAAAAAAAGAAGCTTGCAACTTCAGTATTAGATAAAAGTATTCATGTCGTTCATAGAATTTTCAATTCATAATCATGAGTAAACACGTTTCTGAAGTCAAATTTATGTTTTTTGTTAATGTAGTGTAAATTACACTACATATAACTCGTGGATCCTTATCAAATTTTAGTAGTAT
Unaligned ( gi|8 ): TTGATAAGGAATGCATAATTTTTCATGTTTTCAAGATTAATATACTTCATACACTGCAATAATTAGTGTCCAAGTGAGCAATAAAATAAAAAAGCTTGCAAGCATTCCGTACTTGATAAAAGTTTCAATTGTCGTTCCATAGAAATTCATTCATAACCTGAGTAAAACACGTTCGAATGTCACATTATGTTTTTTTTAATTGTTAAGTGTGAATGATTCAGCACCATACTAACCTAGGATCCTTAGTCAAATTAGAGTTAAGTTATA
Unaligned ( gi|9 ): ACTACTCAAAATGTGATAAGGGTCATAGATCGTTTTCTTAATAATTGCATAACTGGCAATATTGTGTCTGTCCATGAAATGCCTCGGGTTATCAGATTCAACATTCCTTATGATAAACATTCAGGCCGTTCATGAATTCTCATCATAATTAACCTGAGTAACACGTTCTGAGTCAAATTTATGTCTTTGTTATGGTTAGTGGAAATACACACATATACCTAGTATCCTTATCAAATTGGAGTTAGTATATT
Unaligned ( gi|15 ): GATTGTCAGTTTTGTCAAAAAGCAATGATATCAGAGGGGGTCAGATGACACATTTTGGTCTTGAGAGAGATTTTAGGTACCGGGTATAAGATAGTTTTGTGAAACTGGCCCC
Unaligned ( gi|16 ): TCTTGAGATACGACATTTTAGTGAAAAAACTTCGATATGATCTTATCAGTAATTTTGGTCTTGAGACAGATTTTAGTCGCAATATACGTAAGTGAAACTGGCCCC
Unaligned ( gi|17 ): AGTTTTGTGAAAAAGCTATGACACATCTAAATGACAAATTTTGATCCTCAGGCAGATCTTAGTCGTCAGATAGTTTTGTGAAACTGGCCCC
Unaligned ( gi|20 ): CAATATGACAGTTTTGTGAAACAGCTACGATAGATCTTATGACAAATTTTGATCTTAAGAGAGATCTTAGTC
Unaligned ( gi|22 ): CGAAACAGCCTAGCCTATGATAGATCTGCCTATTTGGACAAA