lowQualScore : 111111111111111111111111111111 1111111111111111111111111111111111111111111111 11111111111111111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111111
lowQualScore : 2 88888888 333 1111 1111 444444444444444 111 111 11 111 1 000000000000000000000000000000 1 1 333333 0000000000000000000000000000000000000000000000 1 6666 11 2222 22222 1 22 2 2 22 1 333 2 2 4 11111111111111111111 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222 333333333333333333 1 11111111111 22 7777777777777 1 11 4
lowQualScore : 7 6 77777777 000 5 5 1111 33 2222 66 333333333333333 5 99 6 444 1 8 1 9999 1 44 5 5 666 5 1 5 1 44 6 111 5 5 5 6 555555555555555555555555555555 4 0 5 888888 7777777777777777777777777777777777777777777777 0 6666 88 9999 11111 0 44 7 0 88 77 7 444 0 0 0 6 6 33333333333333333333 6 7 6 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 555555555555555555 0 2 11111111111 77 6 6 6 2222222222222 5 22 6 0
lowQualScore : . . ........ ... . . .... .. .... .. ............... . .. . ... . . . .... . .. . . ... . . . . .. . ... . . . . .............................. . . . ...... .............................................. . .... .. .... ..... . .. . . .. .. . ... . . . . . .................... . . . .................................................................................... ... .................. . . ........... .. . . . ............. . .. . .
lowQualScore : 0 7 33333333 333 7 7 6666 11 1111 55 777777777777777 6 88 0 444 4 9 4 1111 4 66 0 0 222 7 4 7 7 00 7 777 7 7 0 0 333333333333333333333333333333 6 8 0 333333 8888888888888888888888888888888888888888888888 0 7777 33 0000 00000 5 00 5 0 55 55 0 000 0 0 0 0 0 00000000000000000000 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 555555555555555555 5 5 00000000000 55 0 0 0 0000000000000 0 00 0 0
consensus : GGGCTGGGTTTCACAAAACTATCTT-AGATTTGTC-GTAAGAC-AGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATC--ATAAGATTGC-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCGTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAG-CAAATG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA------------AT---T------------AAAAGGATACGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CT-AAATA-TT---TTTTCT------CTTCTG-TTTCAACAAAAAT-TATATATGTAGC--TAGGCTGCTGTCATAAAAGTTGTATATAANCTGTNAATGTTGCAAGCTTCCATANAAAAAAAACCTGTCAACANGGGTGTTTTCTACTNNTACTGCGCTGGTGTAATTA-ATGTTCTTACATGTGCCA-ATGTACTAAAAGCGCAACAGTTTGAGAGTCTACAAG-------------------CTAGGAAAACTTC----TGAANATATGANANGGTGTACAATAGTTTTCTCTGGTCCCTCTAGTTCAGAGATGAATAGCTTTATCGAACTGAGNCGAAGTTNACNCCNCCCCNCCTCA---AAGNTTACTGTTTTGCCGAAGCAAAATTCAGTATGTTTCCCGACAACAGGCACTTGACGTTTTAAGCATATCTAGATTTA
Reference ( gi|1 ) : GGGATGGGTTT-ACAAAACTA-------GTTTGTC-A-AAGAC-AGA-CTTATGATTATCTTAAG----ATCTGACATATGACAATC--AAAAGATTGT-CACTGTTGTTTCACAAAAATATCTTAAGATATAAAAA-TCTTAAGATAAATCTTACGATAA-GT-TTCA-CACTTAACA-TTTTATT-CTGGGATATTGTAG-AAAATG-CT---AAATTG-A-GAAAAATCAATTTCAGGA------------AT---T------------AAAAGGATGTGAAGTGTGATATACTAG------TAGTCCAAGGATA-------------CT-AACTA-TC---TGATCT------CTTCTG-TTTCAACAAAGGTATATATATGTAGC--TAGGCTGCTGTCATAAAAGATGCATA-AAAATATGAATGTTGCAAGCTTCCAT-TAAAAAAACCCTGTTAA-ACAGGTG--TTCAACTGA-ACT-CGCT-GTATAATTAGATGTCCTTACACGT--TATATGTACC--CAGCG-AACAATTTGTGAGTTTACAAGGTTTTGGAAATACATGTAACTAGG--AACTTCCACATGAACACATGAAAGGGTGTATAAT--TTT----------C--------AGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGACCCCCCCCCCCCTCAAAAAAGA-TACTGTTT--CTGAAACAAAATTTAGTG-GTTT-TCAAC-ACAGGCACTTGAAGTTTTAAATATATTTA-ATTTA
gi|4 : GGGCTGGGTTTCACAAATCTATCTTCAGATTTGTC-GTAAGAC-AGA-CT--------------G----ATCTAACTTATGACAATC--ATAAGATTGC-CACTGCTGTTTCACAAAACTATCTCAAGTTATAAAAA-TCTTAAGATAAATCTTACGATAA-GT-TTTA-TGCTTAACA-TTTTATT-CTGGGATATTGTAG-CAAATG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA------------GTTAAT------------AAAAGGAT
gi|14 : ctGGGATGGGTTT-ACAAAACTA-------GTTTGTCAA-AAGAC-AGA-CTTATGATTATCTTAAG----caaaa
gi|13 : GGCTGGGTTTCACAAAACTATCTTAAGATTTGTC-GTAAGAC-AGA-CTTATGATTATCTTAAG----ATCTAACTTA
gi|3 : TTTGTC-GTAAGAA-TGA-CTTATGATTATCTTAAG----ATCTAA--------------------TTGC-CACTGCTGTTTCACAA---TATCTTAAGTTATAAAAA-TCTTAAGATAA----TACGATAAAGTATTTA-TGCTTAAAA-TTTTATTACTGGGATATTGTAG-CAAATG-CT---TCATTC-G-AAAAACTCAGTTTCAGGAGTTAAAAATAAGAT---C------------AAAAGGATATGAAATGTTATATACCAG------TAGTCC--------------------CT-AAATA-TT---TTTTCT------CTTCTG-TTTCAACAAA-AT-TATATATGTAGCTATAGGCTGTTGTCATAAAAGTTGTATA-AAACTATTAATGTTGCAAGCTTCCATAAAAAAAAAACCTGTTAA-AGGGGTG--TTTTACTCT-ACT-CGCT-GTATAATTA
gi|5 : gaTTTGTC-GTAAGAC-AGA-CTTATG----------------TCTAACTTAT------C--ATAAGATTGG-CACTGCTGTTTCACAAAACTATCTTTAGCTATAAAAA-TCATAAGATAAATTTTACGATAA-GT-TTTA-TGCTTAACA-TTTTATT-CTTGGACATTGTAG-CAAATG-GT---AAATTG-A-GAAAACTCAGTTTTAGGACTCAAAAAAGG-AT---C------------AAAAGAACATGAAGTGTTATATA
gi|8 : aagaTTGTC-G-TAAATGAGA-TCTAAGATATTCAAAAG----ATCCCGCTTATAACAATCTTAAAAT-TTAT-CACTGCTGTTTCACAA-----------GATACAAAAAGTCGTAAGATAAATCTTGCTATAA-GT-TTCA-TGCTTGA
gi|6 : TGTC-A-AAAAC-ATATCTTATG-TCATCTTAAGCCAAATC-GACTTATGGCAAT-----AAGATTTTTCACTGCTGTTTCAC-AAAACA----AAGATATAAGAA---------------CTACGCAAA-GT-ATCAGTGCTTACGA-ATTTA-T-CTGGAATATTt
gi|13 : gttcacattacGTTTCACAAAACTATCTTAAGATTT----G-TCGTAAGACAGA-CTTATGATTA-TC-TTAA-GATCTAAC
gi|12 : ggctggGTTTCACAAAACTATCTTAAG-----------CGC------AATCTTACGATAA-GG-TCCA-TGCTTAACA-TTTTAT-------ATA--GCAG-AGGATG-TTTTGAAATTG-ATGAAtta
gi|7 : TCCTACGATAA-GT-TCCA-TGCTTAACA-ATTCAGT-CTGGTACATTGTAA-TAAATG-CT---AAACTG-A-GATAACTTAGTTTCGGGG------------AT---TTA----------AAAAGGAT-CAAAGTGTttgtaaattt
gi|2 : CTTAACAATTTTATT-GGGGAATATTGTAGTAAAGTGTCT---AAATTGGA-GAAAACTCAGTTCCAG--------------AG---T------------AAAA-------AAG--------ACTAG------AAGTCCAAGAATA-------------CTGGGGTA-TCCCTTAATTTTTTTTCCTTCTGTTTTCAACAAAAAATTATATATGTAGC--TAGGCTGCTGTCATAAAAGTTA-ATATAATCTGTAAATGTTGCAAACTTCCAT-TAAAAAAA-CCTGTCAACACGGGTGTTTTCTACTGGTACTGCACTGGTGTAATTA-ATGTTCTTACATGTGCCA-ATGTACTAAAAGCGCAACAGTTTGAGAGTCTACAAG-------------------CTAGGAAAACTTC------AACA-ATGAAAAGGTATACAATAGTTTTCTCTGGTCCC--------AGAGATGAATAA---TATCAAACTGAGCAAAAGTTTA-CCCGCCCCCCCTC----AAGATTACTGTTTTGCCAAAGCAAAATTCAGTATGTTTCCCGACAACAGGCACTTGACGTTTTAAGCATATCTAGATTTAtacctagaacgtatatttgtactagta
gi|9 : ggATTG-A-GAAAACTCAGTTTCAGGA------------AT---TAACAAAAGGATCAAAAGGATATGAAGTGTTATATGCTAAAGTTACTAGTCCAAGGATATTGCATGGTATTCCT-AAATATTT---TTTTCT------CTTCTG-TTTattaattttttctgtaaataaactattgttgtgcaataggtttttttaatggaagttatttcttttattgaatgcacaagcaaatgtattgtcctaaagctaattgttgcctgtggtttccaaactccag
gi|16 : T------CTTCTG-TTTCAATAAAA-T-TATATATGTAGC--TAGGCTGCTGTCAT
gi|11 : TGAAGATAT-ATACGGTGTACAAT--TTT----------CTCTAGTTCAGAGATAAATAGCTTTATTGA--TG-GACGA---TGACACCTCCCCGCC-CA------T-TATTGTTT--CCGAA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AACAACAGGCACTTGCATGTTTTACATAAGTTTAAAAAGAACAATTCCTTCTGTAAACAAACTATTGACTACAGTTTGTTTACAGGAAGAATATTTTTAA
Unaligned ( gi|15 ): AACATATCTAATTTAATGAATTCTTCCTGCAAATAAACTATTGTTG
Alignments
lowQualScore : 1111111111111111111 111111111111111111111
lowQualScore : 1 3333333 1111 111111111 1111 111 55555555555555555555555555555 222222222222 11 222222 777777777777777777777777777 1 3333 11 1 2 33 2 222 2 2 1 22222 222 1 5555555555555555555 11 33333 1 555555555555555555555 33333 1 444444444 33 1 1 1 11 1
lowQualScore : 2 5 9999999 6 5 6 22 00 0000 0 111111111 2222 5 22 1 6 7777 0 4 5 5 5 5 0 5 0 1 5 5 000 5 5 77777777777777777777777777777 999999999999 00 888888 3 0 888888888888888888888888888 0 0 8 0000 33 2 3 1 0 1 00 0 3 1 7 7 222 3 3 0 3 66666 111 5 4 5555555555555555555 88 55555 1 2 6 1 1 333333333333333333333 0 6 11 55555 1 7 1 4 1 1 7 888888888 00 5 5 7 3 3 11 5
lowQualScore : . . ....... . . . .. .. .... . ......... .... . .. . . .... . . . . . . . . . . . . ... . . ............................. ............ .. ...... . . ........................... . . . .... .. . . . . . .. . . . . . ... . . . . ..... ... . . ................... .. ..... . . . . . ..................... . . .. ..... . . . . . . . ......... .. . . . . . .. .
lowQualScore : 5 0 3333333 5 0 2 44 55 6666 1 222222222 3333 0 11 4 6 3333 7 9 0 0 0 0 1 0 2 7 7 7 000 0 0 11111111111111111111111111111 333333333333 55 888888 2 2 222222222222222222222222222 0 8 0 2222 88 3 7 0 7 0 00 7 3 0 3 3 333 3 3 7 3 55555 555 0 0 0000000000000000000 55 77777 0 3 7 0 0 333333333333333333333 7 7 33 00000 0 3 0 0 0 0 3 333333333 33 5 0 3 3 7 00 0
consensus : GGGNTGGGTTTCACAAAACTATCTT-A-GATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATCATAAGATT-GT-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCNTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------AT---T------------AAAA------------GGATATGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAAG-T-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTGCATA-AAACTATNAATGTTGCAAGCTTCCAT--AAAAAAAACCTGTTAA-ACGGGTGTTTTCTACTGNTACT-CGCT-GTATAATTA-ATGTCCTTACACGTGCCATATGTACCAANAGCGCAACAGTTTGNGAGTCTACAAGGTTTTGGAAATACATGTAACTAGGAAAACTTC----TGAACACATGAAANGGTGTACAAT--TTTTCTCT-----------TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGAC-CCNCCCCCCCTC---AAAGATTACTGTTT--CCGAAGCAAAATTCAGTGTGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
Reference ( family-1208 ) : GGGCTGGGTTTCACAAAACTATCTT-A-GATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATCATAAGATT-GC-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCGTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------AT---T------------AAAA------------GGATACGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAAA-T-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTGTATATAANCTGTNAATGTTGCAAGCTTCCATANAAAAAAAACCTGTCAACANGGGTGTTTTCTACTNNTACTGCGCTGGTGTAATTA-ATGTTCTTACATGTGCCA-ATGTACTAAAAGCGCAACAGTTTGAGAGTCTACAAG-------------------CTAGGAAAACTTC----TGAANATATGANANGGTGTACAATAGTTTTCTCTGGTCCCTCTAGTTCAGAGATGAATAGCTTTATCGAACTGAGNCGAAGTTNACNCCNCCCCNCCTC---AAAGNTTACTGTTTTGCCGAAGCAAAATTCAGTATGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
gi|1 : GGGATGGGTTT-ACAAAACTA--------GTTTGTCA-AAGACAGA-CTTATGATTATCTTAAG----ATCTGACATATGACAATCAAAAGATT-GT-CACTGTTGTTTCACAAAAATATCTTAAGATATAAAAA-TCTTAAGATAAATCTTACGATAA-GT-TTCA-CACTTAACA-TTTTATT-CTGGGATATTGTAGAAAA-TG-CT---AAATTG-A-GAAAAATCAATTTCAGGA-----------AT---T------------AAAA------------GGATGTGAAGTGTGATATACTAG------TAGTCCAAGGATA-------------CTA-----------ACTA-TCTGATCTCTTCTGTTT-CAACAAAGG-TATATATATGTAGCTA--GGCTGCTGTCATAAAAGATGCATA-AAAATATGAATGTTGCAAGCTTCCAT-TAAAAAAACCCTGTTAA-ACAGGTG--TTCAACTGA-ACT-CGCT-GTATAATTAGATGTCCTTACACGT--TATATGTACC--CAGCG-AACAATTTGTGAGTTTACAAGGTTTTGGAAATACATGTAACTAGG--AACTTCCACATGAACACATGAAAGGGTGTATAAT--T------------------TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGACCCCCCCCCCCCTCAAAAAAGA-TACTGTTT--CTGAAACAAAATTTAGTG-GTTT-TCAAC-ACAGGCACTTG-AAGTTTTAAATATATTTA-ATTTA
gi|10 : ACAACAGGCACTTGCATGTTTTA--CATA
gi|11 : a----TGAAGATAT-ATACGGTGTACAAT---TTTCTCT---------AGTTCAGAGATAAATAGCTTTATTGA--TG-GACGA---TGACACCTCCCCGCC-C---A----TTATTGTTT--CCGAAagtttaaaaagaacaattccttctgtaaacaaactattgactacagtttgtttacaggaagaatatttttaa
gi|12 : tatGTTTCACAAAACTATCTTAAG-----------CGCAA------TCTTACGATAA-GG-TCCA-TGCTTAACA-TTTTAT-------ATA--GCAGAGGA-TG-TTTTGAAATTG-ATGAA
gi|13 : GGCTGGGTTTCACAAAACTATCTT-AAGATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTAttgtaaattt
gi|14 : GGGATGGGTTT-ACAAAACTA--------GTTTGTCAAAAGACAGA-CTTATGATTATCTTAAG----
gi|16 : TCTTCTGTTT-CAATAAAA--T-TATATATGTAGCTA--GGCTGCTGTCAT
gi|2 : GCTTAACAATTTTATT-GGGGAATATTGTAGTAAAGTGTCT---AAATTGGA-GAAAACTCAGTTCCAG-------------AG---T------------AAAA-------------------AAG--------ACTAG------AAGTCCAAGAATA-------------CTGGGGTATCCCTTAATT-TTTTTTC-CTTCTGTTTTCAACAAAAAAT-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTA-ATATAATCTGTAAATGTTGCAAACTTCCATT--AAAAAAACCTGTCAACACGGGTGTTTTCTACTGGTACTGCACTGGTGTAATTA-ATGTTCTTACATGTGCCA-ATGTACTAAAAGCGCAACAGTTTGAGAGTCTACAAG-------------------CTAGGAAAACTTC------AACA-ATGAAAAGGTATACAATAGTTTTCTCTGGTCC--------CAGAGATGAATAA---TATCAAACTGAGCAAAAGTTTAC-CCGCCCCCCCTC----AAGATTACTGTTTTGCCAAAGCAAAATTCAGTATGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
gi|3 : g-GATTTGTCGTAAGAATGA-CTTATGATTATCTTAAG----ATCTAA------------------TT-GC-CACTGCTGTTTCACAA---TATCTTAAGTTATAAAAA-TCTTAAGATAA----TACGATAAAGTATTTA-TGCTTAAAA-TTTTATTACTGGGATATTGTAGCAAA-TG-CT---TCATTC-G-AAAAACTCAGTTTCAGGA-----------GT---T------------AAAAATAAGATCAAAAGGATATGAAATGTTATATACCAG------TAGTCC--------------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAA--T-TATATATGTAGCTATAGGCTGTTGTCATAAAAGTTGTATA-AAACTATTAATGTTGCAAGCTTCCATAAAAAAAAAACCTGTTAA-AGGGGTGTTT--TACT-CTACT-CGCT-GTATAATTA-attaattttttctgtaaataaactattgttgtgcaataggtttttttaatggaagttatttcttttattgaatgcacaagcaaatgtattgtcctaaagctaattgttgcctgtggtttccaaactccag
gi|4 : GGGCTGGGTTTCACAAATCTATCTTCA-GATTTGTCGTAAGACAGA-CT--------------G----ATCTAACTTATGACAATCATAAGATT-GC-CACTGCTGTTTCACAAAACTATCTCAAGTTATAAAAA-TCTTAAGATAAATCTTACGATAA-GT-TTTA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------GTTAAT------------AAAA------------GGAT
gi|5 : ct-A-GATTTGTCGTAAGACAGA-CTTATG----------------TCTAACTTAT------CATAAGATT-GG-CACTGCTGTTTCACAAAACTATCTTTAGCTATAAAAA-TCATAAGATAAATTTTACGATAA-GT-TTTA-TGCTTAACA-TTTTATT-CTTGGACATTGTAGCAAA-TG-GT---AAATTG-A-GAAAACTCAGTTTTAGGACTCAAAAAAGGAT---C------------AAAA------------GAACATGAAGTGTTATATAcaaaa
gi|6 : aTGTCA-AAAACATATCTTATG-TCATCTTAAGCCAAATC-GACTTATGGCAAT---AAGATT-TTTCACTGCTGTTTCACAAAAC-A----AAGATATAAGAA---------------CTACGCAAA-GT-ATCAGTGCTTACGA-ATTTA-T-CTGGAATATT
gi|7 : gttcacattacTCCTACGATAA-GT-TCCA-TGCTTAACA-ATTCAGT-CTGGTACATTGTAATAAA-TG-CT---AAACTG-A-GATAACTTAGTTTCGGGG-----------AT---TTA----------AAAA------------GGAT-CAAAGTGTTA
gi|8 : TTGTCGTAAATGAGA-TCTAAGATATTCAAAAG----ATCCCGCTTATAACAATCTTAAAATTTAT-CACTGCTGTTTCACAA-----------GATACAAAAAGTCGTAAGATAAATCTTGCTATAA-GT-TTCA-TGCTTGAcctagaacgtatatttgtactagta
gi|9 : ATTG-A-GAAAACTCAGTTTCAGGA-----------AT---TAACAAAAGGATCAAAA------------GGATATGAAGTGTTATATGCTAAAGTTACTAGTCCAAGGATATTGCATGGTATTCCTA-----------AATATTTTTTTCTCTTCTGTTT-t
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AACATATCTAATTTAATGAATTCTTCCTGCAAATAAACTATTGTTG
Alignments
lowQualScore : 1 3333333 1111 111111111 1111 111 55555555555555555555555555555 222222222222 222222 777777777777777777777777777 1 3333 11 1 1 2222 1 111 1 1 1 22222 111 1 6666666666666666666 11 33333 1 666666666666666 11 1 111 1 444444 11 1 1 1 11 1
lowQualScore : 1 5 9999999 6 5 6 22 00 0000 0 111111111 0000 5 22 1 6 77 3 0 4 5 5 5 5 0 5 0 1 5 5 000 5 5 77777777777777777777777777777 999999999999 5 888888 3 0 888888888888888888888888888 0 0 8 0000 33 2 3 1 2222 3 7 7 555 3 3 3 22222 999 5 1 7777777777777777777 88 55555 2 6 1 777777777777777 6 88 3 7 666 1 3 444444 7 88 5 5 7 3 3 11 5
lowQualScore : . . ....... . . . .. .. .... . ......... .... . .. . . .. . . . . . . . . . . . . . ... . . ............................. ............ . ...... . . ........................... . . . .... .. . . . .... . . . ... . . . ..... ... . . ................... .. ..... . . . ............... . .. . . ... . . ...... . .. . . . . . .. .
lowQualScore : 0 0 3333333 5 0 2 44 55 6666 1 222222222 2222 0 11 4 6 11 0 7 9 0 0 0 0 1 0 2 7 7 7 000 0 0 11111111111111111111111111111 333333333333 7 888888 2 2 222222222222222222222222222 0 8 0 0000 88 0 3 0 7777 3 3 3 000 3 3 3 00000 555 0 0 0000000000000000000 55 77777 0 7 0 333333333333333 7 33 3 3 777 0 3 333333 3 33 5 0 3 3 7 00 0
consensus : GGGNTGGGTTTCACAAAACTATCTT-A-GATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATCATAAGATT-GT-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCNTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------AT---T------------AAAA------------GGATATGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAAG-T-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTGCATA-AAACTATNAATGTTGCAAGCTTCCA-T--AAAAAAAACCTGTTAA-ACGGGTGTTTTCTACTGNTACT-CGCT-GTATAATTA-ATGTCCTTACACGTGCCATATGTACCAANAGCGCAACAGTTTGNGAGTCTACAAGGTTTTGGAAATACATGTAACTAGGAAAACTTC----TGAACACATGAAANGGTGTACAAT--TTT-CTC---T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGA-C-CCNCCCC-CCCTC----AAGATTACTGTTT--CCGAAGCAAAATTCAGTGTGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
Reference ( family-1208 ) : GGGNTGGGTTTCACAAAACTATCTT-A-GATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATCATAAGATT-GT-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCNTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------AT---T------------AAAA------------GGATATGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAAG-T-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTGCATA-AAACTATNAATGTTGCAAGCTTCCA-T--AAAAAAAACCTGTTAA-ACGGGTGTTTTCTACTGNTACT-CGCT-GTATAATTA-ATGTCCTTACACGTGCCATATGTACCAANAGCGCAACAGTTTGNGAGTCTACAAGGTTTTGGAAATACATGTAACTAGGAAAACTTC----TGAACACATGAAANGGTGTACAAT--TTTTCTC---T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGA-C-CCNCCCC-CCCTC---AAAGATTACTGTTT--CCGAAGCAAAATTCAGTGTGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
gi|1 : GGGATGGGTTT-ACAAAACTA--------GTTTGTCA-AAGACAGA-CTTATGATTATCTTAAG----ATCTGACATATGACAATCAAAAGATT-GT-CACTGTTGTTTCACAAAAATATCTTAAGATATAAAAA-TCTTAAGATAAATCTTACGATAA-GT-TTCA-CACTTAACA-TTTTATT-CTGGGATATTGTAGAAAA-TG-CT---AAATTG-A-GAAAAATCAATTTCAGGA-----------AT---T------------AAAA------------GGATGTGAAGTGTGATATACTAG------TAGTCCAAGGATA-------------CTA-----------ACTA-TCTGATCTCTTCTGTTT-CAACAAAGG-TATATATATGTAGCTA--GGCTGCTGTCATAAAAGATGCATA-AAAATATGAATGTTGCAAGCTTCCATT--AAAAAAACCCTGTTAA-ACAGGTG--TTCAACTGA-ACT-CGCT-GTATAATTAGATGTCCTTACACGT--TATATGTACC--CAGCG-AACAATTTGTGAGTTTACAAGGTTTTGGAAATACATGTAACTAGG--AACTTCCACATGAACACATGAAAGGGTGTATAAT------------T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGACC-CCCCCCC-CCCTCAAAAAAGA-TACTGTTT--CTGAAACAAAATTTAGTG-GTTT-TCAAC-ACAGGCACTTG-AAGTTTTAAATATATTTA-ATTTA
gi|10 : ACAACAGGCACTTGCATGTTTTA--CATA
gi|11 : a----TGAAGATAT-ATACGGTGTACAAT--TTT-CTC---TAGTTCAGAGATAAATAGCTTTATTGA--TG-GACGA---TGA-CACCTCCCCGCCC---------ATTATTGTTT--CCGAAagtttaaaaagaacaattccttctgtaaacaaactattgactacagtttgtttacaggaagaatatttttaa
gi|12 : tatGTTTCACAAAACTATCTTAAG-----------CGCAA------TCTTACGATAA-GG-TCCA-TGCTTAACA-TTTTAT-------ATA--GCAGAGGA-TG-TTTTGAAATTG-ATGAA
gi|13 : GGCTGGGTTTCACAAAACTATCTT-AAGATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTAttgtaaattt
gi|14 : GGGATGGGTTT-ACAAAACTA--------GTTTGTCAAAAGACAGA-CTTATGATTATCTTAAG----
gi|16 : TCTTCTGTTT-CAATAAAA--T-TATATATGTAGCTA--GGCTGCTGTCAT
gi|2 : GCTTAACAATTTTATT-GGGGAATATTGTAGTAAAGTGTCT---AAATTGGA-GAAAACTCAGTTCCAG-------------AG---T------------AAAA-------------------AAG--------ACTAG------AAGTCCAAGAATA-------------CTGGGGTATCCCTTAATT-TTTTTTC-CTTCTGTTTTCAACAAAAAAT-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTA-ATATAATCTGTAAATGTTGCAAACTTCCA-T--TAAAAAAACCTGTCAACACGGGTGTTTTCTACTGGTACTGCACTGGTGTAATTA-ATGTTCTTACATGTGCCA-ATGTACTAAAAGCGCAACAGTTTGAGAGTCTACAAG-------------------CTAGGAAAACTTC------AACA-ATGAAAAGGTATACAATAGTTTTCTCTGGT--CCCAGAGATGAATAA---TATCAAACTGAGCAAAAGTTTA-C-CCGCCCC-CCCTC----AAGATTACTGTTTTGCCAAAGCAAAATTCAGTATGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
gi|3 : g-GATTTGTCGTAAGAATGA-CTTATGATTATCTTAAG----ATCTAA------------------TT-GC-CACTGCTGTTTCACAA---TATCTTAAGTTATAAAAA-TCTTAAGATAA----TACGATAAAGTATTTA-TGCTTAAAA-TTTTATTACTGGGATATTGTAGCAAA-TG-CT---TCATTC-G-AAAAACTCAGTTTCAGGA-----------GT---T------------AAAAATAAGATCAAAAGGATATGAAATGTTATATACCAG------TAGTCC--------------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAA--T-TATATATGTAGCTATAGGCTGTTGTCATAAAAGTTGTATA-AAACTATTAATGTTGCAAGCTTCCA-TAAAAAAAAAACCTGTTAA-AGGGGTGTTT--TACT-CTACT-CGCT-GTATAATTA-attaattttttctgtaaataaactattgttgtgcaataggtttttttaatggaagttatttcttttattgaatgcacaagcaaatgtattgtcctaaagctaattgttgcctgtggtttccaaactccag
gi|4 : GGGCTGGGTTTCACAAATCTATCTTCA-GATTTGTCGTAAGACAGA-CT--------------G----ATCTAACTTATGACAATCATAAGATT-GC-CACTGCTGTTTCACAAAACTATCTCAAGTTATAAAAA-TCTTAAGATAAATCTTACGATAA-GT-TTTA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------GTTAAT------------AAAA------------GGAT
gi|5 : ct-A-GATTTGTCGTAAGACAGA-CTTATG----------------TCTAACTTAT------CATAAGATT-GG-CACTGCTGTTTCACAAAACTATCTTTAGCTATAAAAA-TCATAAGATAAATTTTACGATAA-GT-TTTA-TGCTTAACA-TTTTATT-CTTGGACATTGTAGCAAA-TG-GT---AAATTG-A-GAAAACTCAGTTTTAGGACTCAAAAAAGGAT---C------------AAAA------------GAACATGAAGTGTTATATAcaaaa
gi|6 : aTGTCA-AAAACATATCTTATG-TCATCTTAAGCCAAATC-GACTTATGGCAAT---AAGATT-TTTCACTGCTGTTTCACAAAAC-A----AAGATATAAGAA---------------CTACGCAAA-GT-ATCAGTGCTTACGA-ATTTA-T-CTGGAATATT
gi|7 : gttcacattacTCCTACGATAA-GT-TCCA-TGCTTAACA-ATTCAGT-CTGGTACATTGTAATAAA-TG-CT---AAACTG-A-GATAACTTAGTTTCGGGG-----------AT---TTA----------AAAA------------GGAT-CAAAGTGTTA
gi|8 : TTGTCGTAAATGAGA-TCTAAGATATTCAAAAG----ATCCCGCTTATAACAATCTTAAAATTTAT-CACTGCTGTTTCACAA-----------GATACAAAAAGTCGTAAGATAAATCTTGCTATAA-GT-TTCA-TGCTTGAcctagaacgtatatttgtactagta
gi|9 : ATTG-A-GAAAACTCAGTTTCAGGA-----------AT---TAACAAAAGGATCAAAA------------GGATATGAAGTGTTATATGCTAAAGTTACTAGTCCAAGGATATTGCATGGTATTCCTA-----------AATATTTTTTTCTCTTCTGTTT-t
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AACATATCTAATTTAATGAATTCTTCCTGCAAATAAACTATTGTTG
Alignments
lowQualScore : 1 3333333 1111 111111111 1111 111 55555555555555555555555555555 222222222222 222222 777777777777777777777777777 1 3333 11 1 1 2222 1 111 1 1 1 22222 111 1 6666666666666666666 11 33333 1 4444444444444444 11 1 111 1 333333 11 1 1 1 11 1
lowQualScore : 1 5 9999999 6 5 6 22 00 0000 0 111111111 0000 5 22 1 6 77 3 0 4 5 5 5 5 0 5 0 1 5 5 000 5 5 77777777777777777777777777777 999999999999 5 888888 3 0 888888888888888888888888888 0 0 8 0000 33 2 3 1 2222 3 7 7 555 3 3 3 22222 999 5 1 7777777777777777777 88 55555 2 6 1 8888888888888888 6 88 3 7 666 1 3 444444 7 88 5 5 7 3 3 11 5
lowQualScore : . . ....... . . . .. .. .... . ......... .... . .. . . .. . . . . . . . . . . . . . ... . . ............................. ............ . ...... . . ........................... . . . .... .. . . . .... . . . ... . . . ..... ... . . ................... .. ..... . . . ................ . .. . . ... . . ...... . .. . . . . . .. .
lowQualScore : 0 0 3333333 5 0 2 44 55 6666 1 222222222 2222 0 11 4 6 11 0 7 9 0 0 0 0 1 0 2 7 7 7 000 0 0 11111111111111111111111111111 333333333333 7 888888 2 2 222222222222222222222222222 0 8 0 0000 88 0 3 0 7777 3 3 3 000 3 3 3 00000 555 0 0 0000000000000000000 55 77777 0 7 0 0000000000000000 7 33 3 3 777 0 3 000000 3 33 5 0 3 3 7 00 0
consensus : GGGNTGGGTTTCACAAAACTATCTT-A-GATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATCATAAGATT-GT-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCNTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------AT---T------------AAAA------------GGATATGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAAG-T-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTGCATA-AAACTATNAATGTTGCAAGCTTCCA-T--AAAAAAAACCTGTTAA-ACGGGTGTTTTCTACTGNTACT-CGCT-GTATAATTA-ATGTCCTTACACGTGCCATATGTACCAANAGCGCAACAGTTTGNGAGTCTACAAGGTTTTGGAAATACATGTAACTAGGAAAACTTC----TGAACACATGAAANGGTGTACAA---TTTTCTC---T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGA-C-CCNCCCC-CCCTC----AAGATTACTGTTT--CCGAAGCAAAATTCAGTGTGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
Reference ( family-1208 ) : GGGNTGGGTTTCACAAAACTATCTT-A-GATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATCATAAGATT-GT-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCNTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------AT---T------------AAAA------------GGATATGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAAG-T-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTGCATA-AAACTATNAATGTTGCAAGCTTCCA-T--AAAAAAAACCTGTTAA-ACGGGTGTTTTCTACTGNTACT-CGCT-GTATAATTA-ATGTCCTTACACGTGCCATATGTACCAANAGCGCAACAGTTTGNGAGTCTACAAGGTTTTGGAAATACATGTAACTAGGAAAACTTC----TGAACACATGAAANGGTGTACAA---TTTTCTC---T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGA-C-CCNCCCC-CCCTC----AAGATTACTGTTT--CCGAAGCAAAATTCAGTGTGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
gi|1 : GGGATGGGTTT-ACAAAACTA--------GTTTGTCA-AAGACAGA-CTTATGATTATCTTAAG----ATCTGACATATGACAATCAAAAGATT-GT-CACTGTTGTTTCACAAAAATATCTTAAGATATAAAAA-TCTTAAGATAAATCTTACGATAA-GT-TTCA-CACTTAACA-TTTTATT-CTGGGATATTGTAGAAAA-TG-CT---AAATTG-A-GAAAAATCAATTTCAGGA-----------AT---T------------AAAA------------GGATGTGAAGTGTGATATACTAG------TAGTCCAAGGATA-------------CTA-----------ACTA-TCTGATCTCTTCTGTTT-CAACAAAGG-TATATATATGTAGCTA--GGCTGCTGTCATAAAAGATGCATA-AAAATATGAATGTTGCAAGCTTCCATT--AAAAAAACCCTGTTAA-ACAGGTG--TTCAACTGA-ACT-CGCT-GTATAATTAGATGTCCTTACACGT--TATATGTACC--CAGCG-AACAATTTGTGAGTTTACAAGGTTTTGGAAATACATGTAACTAGG--AACTTCCACATGAACACATGAAAGGGTGTATAA---T---------T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGACC-CCCCCCC-CCCTCAAAAAAGA-TACTGTTT--CTGAAACAAAATTTAGTG-GTTT-TCAAC-ACAGGCACTTG-AAGTTTTAAATATATTTA-ATTTA
gi|10 : ACAACAGGCACTTGCATGTTTTA--CATA
gi|11 : a----TGAAGATAT-ATACGGTGTACAA---TTTTCTC---TAGTTCAGAGATAAATAGCTTTATTGA--TG-GACGA---TGA-CACCTCCCCGCCC---------ATTATTGTTT--CCGAAagtttaaaaagaacaattccttctgtaaacaaactattgactacagtttgtttacaggaagaatatttttaa
gi|12 : tatGTTTCACAAAACTATCTTAAG-----------CGCAA------TCTTACGATAA-GG-TCCA-TGCTTAACA-TTTTAT-------ATA--GCAGAGGA-TG-TTTTGAAATTG-ATGAA
gi|13 : GGCTGGGTTTCACAAAACTATCTT-AAGATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTAttgtaaattt
gi|14 : GGGATGGGTTT-ACAAAACTA--------GTTTGTCAAAAGACAGA-CTTATGATTATCTTAAG----
gi|16 : TCTTCTGTTT-CAATAAAA--T-TATATATGTAGCTA--GGCTGCTGTCAT
gi|2 : GCTTAACAATTTTATT-GGGGAATATTGTAGTAAAGTGTCT---AAATTGGA-GAAAACTCAGTTCCAG-------------AG---T------------AAAA-------------------AAG--------ACTAG------AAGTCCAAGAATA-------------CTGGGGTATCCCTTAATT-TTTTTTC-CTTCTGTTTTCAACAAAAAAT-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTA-ATATAATCTGTAAATGTTGCAAACTTCCA-T--TAAAAAAACCTGTCAACACGGGTGTTTTCTACTGGTACTGCACTGGTGTAATTA-ATGTTCTTACATGTGCCA-ATGTACTAAAAGCGCAACAGTTTGAGAGTCTACAAG-------------------CTAGGAAAACTTC------AACA-ATGAAAAGGTATACAATAGTTTTCTCTGGT--CCCAGAGATGAATAA---TATCAAACTGAGCAAAAGTTTA-C-CCGCCCC-CCCTC----AAGATTACTGTTTTGCCAAAGCAAAATTCAGTATGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
gi|3 : g-GATTTGTCGTAAGAATGA-CTTATGATTATCTTAAG----ATCTAA------------------TT-GC-CACTGCTGTTTCACAA---TATCTTAAGTTATAAAAA-TCTTAAGATAA----TACGATAAAGTATTTA-TGCTTAAAA-TTTTATTACTGGGATATTGTAGCAAA-TG-CT---TCATTC-G-AAAAACTCAGTTTCAGGA-----------GT---T------------AAAAATAAGATCAAAAGGATATGAAATGTTATATACCAG------TAGTCC--------------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAA--T-TATATATGTAGCTATAGGCTGTTGTCATAAAAGTTGTATA-AAACTATTAATGTTGCAAGCTTCCA-TAAAAAAAAAACCTGTTAA-AGGGGTGTTT--TACT-CTACT-CGCT-GTATAATTA-attaattttttctgtaaataaactattgttgtgcaataggtttttttaatggaagttatttcttttattgaatgcacaagcaaatgtattgtcctaaagctaattgttgcctgtggtttccaaactccag
gi|4 : GGGCTGGGTTTCACAAATCTATCTTCA-GATTTGTCGTAAGACAGA-CT--------------G----ATCTAACTTATGACAATCATAAGATT-GC-CACTGCTGTTTCACAAAACTATCTCAAGTTATAAAAA-TCTTAAGATAAATCTTACGATAA-GT-TTTA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------GTTAAT------------AAAA------------GGAT
gi|5 : ct-A-GATTTGTCGTAAGACAGA-CTTATG----------------TCTAACTTAT------CATAAGATT-GG-CACTGCTGTTTCACAAAACTATCTTTAGCTATAAAAA-TCATAAGATAAATTTTACGATAA-GT-TTTA-TGCTTAACA-TTTTATT-CTTGGACATTGTAGCAAA-TG-GT---AAATTG-A-GAAAACTCAGTTTTAGGACTCAAAAAAGGAT---C------------AAAA------------GAACATGAAGTGTTATATAcaaaa
gi|6 : aTGTCA-AAAACATATCTTATG-TCATCTTAAGCCAAATC-GACTTATGGCAAT---AAGATT-TTTCACTGCTGTTTCACAAAAC-A----AAGATATAAGAA---------------CTACGCAAA-GT-ATCAGTGCTTACGA-ATTTA-T-CTGGAATATT
gi|7 : gttcacattacTCCTACGATAA-GT-TCCA-TGCTTAACA-ATTCAGT-CTGGTACATTGTAATAAA-TG-CT---AAACTG-A-GATAACTTAGTTTCGGGG-----------AT---TTA----------AAAA------------GGAT-CAAAGTGTTA
gi|8 : TTGTCGTAAATGAGA-TCTAAGATATTCAAAAG----ATCCCGCTTATAACAATCTTAAAATTTAT-CACTGCTGTTTCACAA-----------GATACAAAAAGTCGTAAGATAAATCTTGCTATAA-GT-TTCA-TGCTTGAcctagaacgtatatttgtactagta
gi|9 : ATTG-A-GAAAACTCAGTTTCAGGA-----------AT---TAACAAAAGGATCAAAA------------GGATATGAAGTGTTATATGCTAAAGTTACTAGTCCAAGGATATTGCATGGTATTCCTA-----------AATATTTTTTTCTCTTCTGTTT-t
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AACATATCTAATTTAATGAATTCTTCCTGCAAATAAACTATTGTTG
Alignments
lowQualScore : 1 3333333 1111 111111111 1111 111 55555555555555555555555555555 222222222222 222222 777777777777777777777777777 1 3333 11 1 1 2222 1 111 1 1 1 22222 111 1 6666666666666666666 11 33333 1 4444444444444444 11 1 111 1 333333 11 1 1 1 11 1
lowQualScore : 1 5 9999999 6 5 6 22 00 0000 0 111111111 0000 5 22 1 6 77 3 0 4 5 5 5 5 0 5 0 1 5 5 000 5 5 77777777777777777777777777777 999999999999 5 888888 3 0 888888888888888888888888888 0 0 8 0000 33 2 3 1 2222 3 7 7 555 3 3 3 22222 999 5 1 7777777777777777777 88 55555 2 6 1 8888888888888888 6 88 3 7 666 1 3 444444 7 88 5 5 7 3 3 11 5
lowQualScore : . . ....... . . . .. .. .... . ......... .... . .. . . .. . . . . . . . . . . . . . ... . . ............................. ............ . ...... . . ........................... . . . .... .. . . . .... . . . ... . . . ..... ... . . ................... .. ..... . . . ................ . .. . . ... . . ...... . .. . . . . . .. .
lowQualScore : 0 0 3333333 5 0 2 44 55 6666 1 222222222 2222 0 11 4 6 11 0 7 9 0 0 0 0 1 0 2 7 7 7 000 0 0 11111111111111111111111111111 333333333333 7 888888 2 2 222222222222222222222222222 0 8 0 0000 88 0 3 0 7777 3 3 3 000 3 3 3 00000 555 0 0 0000000000000000000 55 77777 0 7 0 0000000000000000 7 33 3 3 777 0 3 000000 3 33 5 0 3 3 7 00 0
consensus : GGGNTGGGTTTCACAAAACTATCTT-A-GATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATCATAAGATT-GT-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCNTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------AT---T------------AAAA------------GGATATGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAAG-T-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTGCATA-AAACTATNAATGTTGCAAGCTTCCA-T--AAAAAAAACCTGTTAA-ACGGGTGTTTTCTACTGNTACT-CGCT-GTATAATTA-ATGTCCTTACACGTGCCATATGTACCAANAGCGCAACAGTTTGNGAGTCTACAAGGTTTTGGAAATACATGTAACTAGGAAAACTTC----TGAACACATGAAANGGTGTACAA---TTTTCTC---T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGA-C-CCNCCCC-CCCTC----AAGATTACTGTTT--CCGAAGCAAAATTCAGTGTGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
Reference ( family-1208 ) : GGGNTGGGTTTCACAAAACTATCTT-A-GATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATCATAAGATT-GT-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCNTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------AT---T------------AAAA------------GGATATGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAAG-T-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTGCATA-AAACTATNAATGTTGCAAGCTTCCA-T--AAAAAAAACCTGTTAA-ACGGGTGTTTTCTACTGNTACT-CGCT-GTATAATTA-ATGTCCTTACACGTGCCATATGTACCAANAGCGCAACAGTTTGNGAGTCTACAAGGTTTTGGAAATACATGTAACTAGGAAAACTTC----TGAACACATGAAANGGTGTACAA---TTTTCTC---T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGA-C-CCNCCCC-CCCTC----AAGATTACTGTTT--CCGAAGCAAAATTCAGTGTGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
gi|1 : GGGATGGGTTT-ACAAAACTA--------GTTTGTCA-AAGACAGA-CTTATGATTATCTTAAG----ATCTGACATATGACAATCAAAAGATT-GT-CACTGTTGTTTCACAAAAATATCTTAAGATATAAAAA-TCTTAAGATAAATCTTACGATAA-GT-TTCA-CACTTAACA-TTTTATT-CTGGGATATTGTAGAAAA-TG-CT---AAATTG-A-GAAAAATCAATTTCAGGA-----------AT---T------------AAAA------------GGATGTGAAGTGTGATATACTAG------TAGTCCAAGGATA-------------CTA-----------ACTA-TCTGATCTCTTCTGTTT-CAACAAAGG-TATATATATGTAGCTA--GGCTGCTGTCATAAAAGATGCATA-AAAATATGAATGTTGCAAGCTTCCATT--AAAAAAACCCTGTTAA-ACAGGTG--TTCAACTGA-ACT-CGCT-GTATAATTAGATGTCCTTACACGT--TATATGTACC--CAGCG-AACAATTTGTGAGTTTACAAGGTTTTGGAAATACATGTAACTAGG--AACTTCCACATGAACACATGAAAGGGTGTATAA---T---------T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGACC-CCCCCCC-CCCTCAAAAAAGA-TACTGTTT--CTGAAACAAAATTTAGTG-GTTT-TCAAC-ACAGGCACTTG-AAGTTTTAAATATATTTA-ATTTA
gi|10 : ACAACAGGCACTTGCATGTTTTA--CATA
gi|11 : a----TGAAGATAT-ATACGGTGTACAA---TTTTCTC---TAGTTCAGAGATAAATAGCTTTATTGA--TG-GACGA---TGA-CACCTCCCCGCCC---------ATTATTGTTT--CCGAAagtttaaaaagaacaattccttctgtaaacaaactattgactacagtttgtttacaggaagaatatttttaa
gi|12 : tatGTTTCACAAAACTATCTTAAG-----------CGCAA------TCTTACGATAA-GG-TCCA-TGCTTAACA-TTTTAT-------ATA--GCAGAGGA-TG-TTTTGAAATTG-ATGAA
gi|13 : GGCTGGGTTTCACAAAACTATCTT-AAGATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTAttgtaaattt
gi|14 : GGGATGGGTTT-ACAAAACTA--------GTTTGTCAAAAGACAGA-CTTATGATTATCTTAAG----
gi|16 : TCTTCTGTTT-CAATAAAA--T-TATATATGTAGCTA--GGCTGCTGTCAT
gi|2 : GCTTAACAATTTTATT-GGGGAATATTGTAGTAAAGTGTCT---AAATTGGA-GAAAACTCAGTTCCAG-------------AG---T------------AAAA-------------------AAG--------ACTAG------AAGTCCAAGAATA-------------CTGGGGTATCCCTTAATT-TTTTTTC-CTTCTGTTTTCAACAAAAAAT-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTA-ATATAATCTGTAAATGTTGCAAACTTCCA-T--TAAAAAAACCTGTCAACACGGGTGTTTTCTACTGGTACTGCACTGGTGTAATTA-ATGTTCTTACATGTGCCA-ATGTACTAAAAGCGCAACAGTTTGAGAGTCTACAAG-------------------CTAGGAAAACTTC------AACA-ATGAAAAGGTATACAATAGTTTTCTCTGGT--CCCAGAGATGAATAA---TATCAAACTGAGCAAAAGTTTA-C-CCGCCCC-CCCTC----AAGATTACTGTTTTGCCAAAGCAAAATTCAGTATGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
gi|3 : g-GATTTGTCGTAAGAATGA-CTTATGATTATCTTAAG----ATCTAA------------------TT-GC-CACTGCTGTTTCACAA---TATCTTAAGTTATAAAAA-TCTTAAGATAA----TACGATAAAGTATTTA-TGCTTAAAA-TTTTATTACTGGGATATTGTAGCAAA-TG-CT---TCATTC-G-AAAAACTCAGTTTCAGGA-----------GT---T------------AAAAATAAGATCAAAAGGATATGAAATGTTATATACCAG------TAGTCC--------------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAA--T-TATATATGTAGCTATAGGCTGTTGTCATAAAAGTTGTATA-AAACTATTAATGTTGCAAGCTTCCA-TAAAAAAAAAACCTGTTAA-AGGGGTGTTT--TACT-CTACT-CGCT-GTATAATTA-attaattttttctgtaaataaactattgttgtgcaataggtttttttaatggaagttatttcttttattgaatgcacaagcaaatgtattgtcctaaagctaattgttgcctgtggtttccaaactccag
gi|4 : GGGCTGGGTTTCACAAATCTATCTTCA-GATTTGTCGTAAGACAGA-CT--------------G----ATCTAACTTATGACAATCATAAGATT-GC-CACTGCTGTTTCACAAAACTATCTCAAGTTATAAAAA-TCTTAAGATAAATCTTACGATAA-GT-TTTA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------GTTAAT------------AAAA------------GGAT
gi|5 : ct-A-GATTTGTCGTAAGACAGA-CTTATG----------------TCTAACTTAT------CATAAGATT-GG-CACTGCTGTTTCACAAAACTATCTTTAGCTATAAAAA-TCATAAGATAAATTTTACGATAA-GT-TTTA-TGCTTAACA-TTTTATT-CTTGGACATTGTAGCAAA-TG-GT---AAATTG-A-GAAAACTCAGTTTTAGGACTCAAAAAAGGAT---C------------AAAA------------GAACATGAAGTGTTATATAcaaaa
gi|6 : aTGTCA-AAAACATATCTTATG-TCATCTTAAGCCAAATC-GACTTATGGCAAT---AAGATT-TTTCACTGCTGTTTCACAAAAC-A----AAGATATAAGAA---------------CTACGCAAA-GT-ATCAGTGCTTACGA-ATTTA-T-CTGGAATATT
gi|7 : gttcacattacTCCTACGATAA-GT-TCCA-TGCTTAACA-ATTCAGT-CTGGTACATTGTAATAAA-TG-CT---AAACTG-A-GATAACTTAGTTTCGGGG-----------AT---TTA----------AAAA------------GGAT-CAAAGTGTTA
gi|8 : TTGTCGTAAATGAGA-TCTAAGATATTCAAAAG----ATCCCGCTTATAACAATCTTAAAATTTAT-CACTGCTGTTTCACAA-----------GATACAAAAAGTCGTAAGATAAATCTTGCTATAA-GT-TTCA-TGCTTGAcctagaacgtatatttgtactagta
gi|9 : ATTG-A-GAAAACTCAGTTTCAGGA-----------AT---TAACAAAAGGATCAAAA------------GGATATGAAGTGTTATATGCTAAAGTTACTAGTCCAAGGATATTGCATGGTATTCCTA-----------AATATTTTTTTCTCTTCTGTTT-t
blockSeqs : C C TCTTAA T T A TA CCAA GACAATCAT TTT A CT T T GT G A A A G A A A G T TTG G T ATTAACAAAAGGATC ATAAGATCAAAA A AGTTAC A TTGCATGGTATTCCTA T T AAT TA T T A TAA C T T GGT G G . GCCA AAA C A . AA T T G C TAGTTTTCTCTGGT C AC A A CA T G TC T TG T C A C T AG G
blockSeqs : A C TCTTCA A . A TA . AACAATCTT TAT A CT T T T T A . . . . . T . . . . . CTCAAAAAAGGATC . A . A CTGGGGTATCCCTT . . T . . . T T . T . CT . . . . . . A TTTTCTCTAG . . . . C G . . T . A . C .
blockSeqs : C . . T . A TA . GGCAAT GC A CT T C T T A . . . . . C . . . . . GTTAAT . A . . CTA . . T .
blockSeqs : T . A CA . CAT GC A T T A T A . . . . . . C . . . . . ATTTA . . .
blockSeqs : T . . AT . . GG . C . A . G . . . . . . C . . . . . AGT . .
blockSeqs : T . . . . . . . . . . . . . . . . T . . . . . GTT .
blockSeqs : . . . . . . . . . . . .
blockSeqCons :
originalCons : GGGNTGGGTTTCACAAAACTATCTT-A-GATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATCATAAGATT-GT-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCNTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------AT---T------------AAAA------------GGATATGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAAG-T-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTGCATA-AAACTATNAATGTTGCAAGCTTCCA-T--AAAAAAAACCTGTTAA-ACGGGTGTTTTCTACTGNTACT-CGCT-GTATAATTA-ATGTCCTTACACGTGCCATATGTACCAANAGCGCAACAGTTTGNGAGTCTACAAGGTTTTGGAAATACATGTAACTAGGAAAACTTC----TGAACACATGAAANGGTGTACAA---TTTTCTC---T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGA-C-CCNCCCC-CCCTC----AAGATTACTGTTT--CCGAAGCAAAATTCAGTGTGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
finalCons : GGGNTGGGTTTCACAAAACTATCTT-A-GATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATCATAAGATT-GT-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCNTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------AT---T------------AAAA------------GGATATGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAAG-T-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTGCATA-AAACTATNAATGTTGCAAGCTTCCA-T--AAAAAAAACCTGTTAA-ACGGGTGTTTTCTACTGNTACT-CGCT-GTATAATTA-ATGTCCTTACACGTGCCATATGTACCAANAGCGCAACAGTTTGNGAGTCTACAAGGTTTTGGAAATACATGTAACTAGGAAAACTTC----TGAACACATGAAANGGTGTACAA---TTTTCTC---T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGA-C-CCNCCCC-CCCTC----AAGATTACTGTTT--CCGAAGCAAAATTCAGTGTGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AACATATCTAATTTAATGAATTCTTCCTGCAAATAAACTATTGTTG
Alignments
lowQualScore : 1 3333333 1111 111111111 1111 111 55555555555555555555555555555 222222222222 222222 777777777777777777777777777 1 3333 11 1 1 2222 1 111 1 1 1 22222 111 1 6666666666666666666 11 33333 1 4444444444444444 11 1 111 1 333333 11 1 1 1 11 1
lowQualScore : 1 5 9999999 6 5 6 22 00 0000 0 111111111 0000 5 22 1 6 77 3 0 4 5 5 5 5 0 5 0 1 5 5 000 5 5 77777777777777777777777777777 999999999999 5 888888 3 0 888888888888888888888888888 0 0 8 0000 33 2 3 1 2222 3 7 7 555 3 3 3 22222 999 5 1 7777777777777777777 88 55555 2 6 1 8888888888888888 6 88 3 7 666 1 3 444444 7 88 5 5 7 3 3 11 5
lowQualScore : . . ....... . . . .. .. .... . ......... .... . .. . . .. . . . . . . . . . . . . . ... . . ............................. ............ . ...... . . ........................... . . . .... .. . . . .... . . . ... . . . ..... ... . . ................... .. ..... . . . ................ . .. . . ... . . ...... . .. . . . . . .. .
lowQualScore : 0 0 3333333 5 0 2 44 55 6666 1 222222222 2222 0 11 4 6 11 0 7 9 0 0 0 0 1 0 2 7 7 7 000 0 0 11111111111111111111111111111 333333333333 7 888888 2 2 222222222222222222222222222 0 8 0 0000 88 0 3 0 7777 3 3 3 000 3 3 3 00000 555 0 0 0000000000000000000 55 77777 0 7 0 0000000000000000 7 33 3 3 777 0 3 000000 3 33 5 0 3 3 7 00 0
consensus : GGGNTGGGTTTCACAAAACTATCTT-A-GATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATCATAAGATT-GT-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCNTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------AT---T------------AAAA------------GGATATGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAAG-T-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTGCATA-AAACTATNAATGTTGCAAGCTTCCA-T--AAAAAAAACCTGTTAA-ACGGGTGTTTTCTACTGNTACT-CGCT-GTATAATTA-ATGTCCTTACACGTGCCATATGTACCAANAGCGCAACAGTTTGNGAGTCTACAAGGTTTTGGAAATACATGTAACTAGGAAAACTTC----TGAACACATGAAANGGTGTACAA---TTTTCTC---T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGA-C-CCNCCCC-CCCTC----AAGATTACTGTTT--CCGAAGCAAAATTCAGTGTGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
Reference ( family-1208 ) : GGGNTGGGTTTCACAAAACTATCTT-A-GATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTATGACAATCATAAGATT-GT-CACTGCTGTTTCACAAAACTATCTTAAGNTATAAAAA-TCNTAAGATAAATCTTACGATAA-GT-TTCA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------AT---T------------AAAA------------GGATATGAAGTGTTATATACTAG------TAGTCCAAGGATA-------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAAG-T-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTGCATA-AAACTATNAATGTTGCAAGCTTCCA-T--AAAAAAAACCTGTTAA-ACGGGTGTTTTCTACTGNTACT-CGCT-GTATAATTA-ATGTCCTTACACGTGCCATATGTACCAANAGCGCAACAGTTTGNGAGTCTACAAGGTTTTGGAAATACATGTAACTAGGAAAACTTC----TGAACACATGAAANGGTGTACAA---TTTTCTC---T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGA-C-CCNCCCC-CCCTC----AAGATTACTGTTT--CCGAAGCAAAATTCAGTGTGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
gi|1 : GGGATGGGTTT-ACAAAACTA--------GTTTGTCA-AAGACAGA-CTTATGATTATCTTAAG----ATCTGACATATGACAATCAAAAGATT-GT-CACTGTTGTTTCACAAAAATATCTTAAGATATAAAAA-TCTTAAGATAAATCTTACGATAA-GT-TTCA-CACTTAACA-TTTTATT-CTGGGATATTGTAGAAAA-TG-CT---AAATTG-A-GAAAAATCAATTTCAGGA-----------AT---T------------AAAA------------GGATGTGAAGTGTGATATACTAG------TAGTCCAAGGATA-------------CTA-----------ACTA-TCTGATCTCTTCTGTTT-CAACAAAGG-TATATATATGTAGCTA--GGCTGCTGTCATAAAAGATGCATA-AAAATATGAATGTTGCAAGCTTCCATT--AAAAAAACCCTGTTAA-ACAGGTG--TTCAACTGA-ACT-CGCT-GTATAATTAGATGTCCTTACACGT--TATATGTACC--CAGCG-AACAATTTGTGAGTTTACAAGGTTTTGGAAATACATGTAACTAGG--AACTTCCACATGAACACATGAAAGGGTGTATAA---T---------T--TTCAGAGATAAATAGCTTTATTAA--TG-GCCGAAGTTGACC-CCCCCCC-CCCTCAAAAAAGA-TACTGTTT--CTGAAACAAAATTTAGTG-GTTT-TCAAC-ACAGGCACTTG-AAGTTTTAAATATATTTA-ATTTA
gi|10 : ACAACAGGCACTTGCATGTTTTA--CATA
gi|11 : a----TGAAGATAT-ATACGGTGTACAA---TTTTCTC---TAGTTCAGAGATAAATAGCTTTATTGA--TG-GACGA---TGA-CACCTCCCCGCCC---------ATTATTGTTT--CCGAAagtttaaaaagaacaattccttctgtaaacaaactattgactacagtttgtttacaggaagaatatttttaa
gi|12 : tatGTTTCACAAAACTATCTTAAG-----------CGCAA------TCTTACGATAA-GG-TCCA-TGCTTAACA-TTTTAT-------ATA--GCAGAGGA-TG-TTTTGAAATTG-ATGAA
gi|13 : GGCTGGGTTTCACAAAACTATCTT-AAGATTTGTCGTAAGACAGA-CTTATGATTATCTTAAG----ATCTAACTTAttgtaaattt
gi|14 : GGGATGGGTTT-ACAAAACTA--------GTTTGTCAAAAGACAGA-CTTATGATTATCTTAAG----
gi|16 : TCTTCTGTTT-CAATAAAA--T-TATATATGTAGCTA--GGCTGCTGTCAT
gi|2 : GCTTAACAATTTTATT-GGGGAATATTGTAGTAAAGTGTCT---AAATTGGA-GAAAACTCAGTTCCAG-------------AG---T------------AAAA-------------------AAG--------ACTAG------AAGTCCAAGAATA-------------CTGGGGTATCCCTTAATT-TTTTTTC-CTTCTGTTTTCAACAAAAAAT-TATATATGTAGCTA--GGCTGCTGTCATAAAAGTTA-ATATAATCTGTAAATGTTGCAAACTTCCA-T--TAAAAAAACCTGTCAACACGGGTGTTTTCTACTGGTACTGCACTGGTGTAATTA-ATGTTCTTACATGTGCCA-ATGTACTAAAAGCGCAACAGTTTGAGAGTCTACAAG-------------------CTAGGAAAACTTC------AACA-ATGAAAAGGTATACAATAGTTTTCTCTGGT--CCCAGAGATGAATAA---TATCAAACTGAGCAAAAGTTTA-C-CCGCCCC-CCCTC----AAGATTACTGTTTTGCCAAAGCAAAATTCAGTATGTTTCCCGACAACAGGCACTTG-ACGTTTTAAGCATATCTAGATTTA
gi|3 : g-GATTTGTCGTAAGAATGA-CTTATGATTATCTTAAG----ATCTAA------------------TT-GC-CACTGCTGTTTCACAA---TATCTTAAGTTATAAAAA-TCTTAAGATAA----TACGATAAAGTATTTA-TGCTTAAAA-TTTTATTACTGGGATATTGTAGCAAA-TG-CT---TCATTC-G-AAAAACTCAGTTTCAGGA-----------GT---T------------AAAAATAAGATCAAAAGGATATGAAATGTTATATACCAG------TAGTCC--------------------CTA-----------AATA-TTTTTTCTCTTCTGTTT-CAACAAAA--T-TATATATGTAGCTATAGGCTGTTGTCATAAAAGTTGTATA-AAACTATTAATGTTGCAAGCTTCCA-TAAAAAAAAAACCTGTTAA-AGGGGTGTTT--TACT-CTACT-CGCT-GTATAATTA-attaattttttctgtaaataaactattgttgtgcaataggtttttttaatggaagttatttcttttattgaatgcacaagcaaatgtattgtcctaaagctaattgttgcctgtggtttccaaactccag
gi|4 : GGGCTGGGTTTCACAAATCTATCTTCA-GATTTGTCGTAAGACAGA-CT--------------G----ATCTAACTTATGACAATCATAAGATT-GC-CACTGCTGTTTCACAAAACTATCTCAAGTTATAAAAA-TCTTAAGATAAATCTTACGATAA-GT-TTTA-TGCTTAACA-TTTTATT-CTGGGATATTGTAGCAAA-TG-CT---AAATTG-A-GAAAACTCAGTTTCAGGA-----------GTTAAT------------AAAA------------GGAT
gi|5 : ct-A-GATTTGTCGTAAGACAGA-CTTATG----------------TCTAACTTAT------CATAAGATT-GG-CACTGCTGTTTCACAAAACTATCTTTAGCTATAAAAA-TCATAAGATAAATTTTACGATAA-GT-TTTA-TGCTTAACA-TTTTATT-CTTGGACATTGTAGCAAA-TG-GT---AAATTG-A-GAAAACTCAGTTTTAGGACTCAAAAAAGGAT---C------------AAAA------------GAACATGAAGTGTTATATAcaaaa
gi|6 : aTGTCA-AAAACATATCTTATG-TCATCTTAAGCCAAATC-GACTTATGGCAAT---AAGATT-TTTCACTGCTGTTTCACAAAAC-A----AAGATATAAGAA---------------CTACGCAAA-GT-ATCAGTGCTTACGA-ATTTA-T-CTGGAATATT
gi|7 : gttcacattacTCCTACGATAA-GT-TCCA-TGCTTAACA-ATTCAGT-CTGGTACATTGTAATAAA-TG-CT---AAACTG-A-GATAACTTAGTTTCGGGG-----------AT---TTA----------AAAA------------GGAT-CAAAGTGTTA
gi|8 : TTGTCGTAAATGAGA-TCTAAGATATTCAAAAG----ATCCCGCTTATAACAATCTTAAAATTTAT-CACTGCTGTTTCACAA-----------GATACAAAAAGTCGTAAGATAAATCTTGCTATAA-GT-TTCA-TGCTTGAcctagaacgtatatttgtactagta
gi|9 : ATTG-A-GAAAACTCAGTTTCAGGA-----------AT---TAACAAAAGGATCAAAA------------GGATATGAAGTGTTATATGCTAAAGTTACTAGTCCAAGGATATTGCATGGTATTCCTA-----------AATATTTTTTTCTCTTCTGTTT-t
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AACATATCTAATTTAATGAATTCTTCCTGCAAATAAACTATTGTTG