lowQualScore : 22222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111
lowQualScore : 1 1 55555555555555555555555555555555555555555555555555 1 55555555555 22222222 4444444 1111 6666666666666666666666666666666666666666 111 2222 3333333333333333333333 666666666666666666666666666666666666666666 1111 11 44444444444444444444444444444444444444444444 11 11 1 11 555555555555555555555555555555555555555555555555555555555555555555555555555 1111 8888888888888888888 1 1 33333333 2 88888888888888888888888888 11 444444444444444444444444 1 1
lowQualScore : 6 3 66 3 22222222222222222222222222222222222222222222222222 6 0 666 0 33333333333 1 22222222 22 1 4444444 3 1 3 8888 2 3 2222222222222222222222222222222222222222 222 3 8888 3 5 3333333333333333333333 7 111111111111111111111111111111111111111111 666 6666 2 2 3 44 6 6 3 3 55 8 22222222222222222222222222222222222222222222 1 44 99 3 2 2 9 77 33 5 555555555555555555555555555555555555555555555555555555555555555555555555555 3 5555 3 6666666666666666666 2 8 6 0 7 66666666 7 3 22222222222222222222222222 88 6 6 2 6 2 444444444444444444444444 4 5 5 6
lowQualScore : . . .. . .................................................. . . ... . ........... . ........ .. . ....... . . . .... . . ........................................ ... . .... . . ...................... . .......................................... ... .... . . . .. . . . . .. . ............................................ . .. .. . . . . .. .. . ........................................................................... . .... . ................... . . . . . ........ . . .......................... .. . . . . . ........................ . . . .
lowQualScore : 0 3 77 3 00000000000000000000000000000000000000000000000000 0 7 777 7 66666666666 3 88888888 44 2 5555555 6 2 3 6666 9 6 6666666666666666666666666666666666666666 777 6 7777 6 3 1111111111111111111111 5 666666666666666666666666666666666666666666 777 3333 7 7 1 22 2 2 1 1 33 9 22222222222222222222222222222222222222222222 2 22 44 4 8 2 9 00 22 0 333333333333333333333333333333333333333333333333333333333333333333333333333 2 2222 2 2222222222222222222 5 2 0 0 0 33333333 3 3 33333333333333333333333333 33 0 7 5 0 5 000000000000000000000000 0 5 0 0
consensus : CAATTTAA-ATAGAA-TAC----AGAATA-AGAGTTGGGCAAACAAG--ACCCTGGA------------CCACGAAGCGGGATCAGTGCG----CC-ATGATAGGA---GTAAGCATCCCCTGTCGACCGGTCACA------CCC-GCCGTGA-GTCC--N-TTGT-CT--G-AT----A-GGTAAA-G----A---GG----AGTNANTCCGTAGTCA---AAA-TC-AGGTG-TATAAAAAACG-G----C-T-AACAA--TT-NNTATGAAACACGTCACA-AG--AGC-ATTTGA---CG--CAAN--G----GCAGG-TTGTA-C--TGG-C-AAACT-AG--A-TCG-T-TATA-ACG-AC-CGTA-A--TTGAATTT-GCGAAA----T----GNC-T----TA-----AACGCGACT-TTAAAANCCCTGCAACANCAACTCGTTTGT-AAGTAG-CCTG-C-CTGT--TT-AA--AACC-TGATC-----AT-ACGCAGA-A--CAA----GC-TG--CT-----T--------AATAAGTTGAGAGANATAAACACCATAC----A-GCGGGTGAC-GATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAGCCGA-----------TTCGTCATAGAGCCGAGTTG--TTAGTTTGCCGTTAATGTNTATGTCNAATGAAATANCCAAGTCACGAAGCANACGTGGANGACTCTGTGGTGT
Reference ( gi|1 ) : CAATCTAA-ACGGAA-TAC---CAGAGTA-A---------AAACAAGGAACCTTGGATACTAGTAATGACCA-GAGGTGAGATCAG-GTG----G--ATGATAGGA---GTAAGCATCCCCTGTCGACCGGTCACAG-----ACC-GCCGTGA-ATCC--T-TTAT-CT--G-AT----A-GGTAAG-G----A---GG----AGTTAATCCGTAGTCA---AAA-TC-AGGTG-TATAAAGAACG-A----C-T-AACAA--TG-AGTATAAAACACGTCATA-AGT-AGC-ATTTGA---CA--CAAA--G----GTAGG-TTGTA-T--TGG-C-AAACT-AG--A-TCG-T-TATA-ACG-AC-CATA-ACTTTGAATTTCGCGAAA----T----GAC-G----TA-----AACGTGACTGTTGTGACCCCTGTAACATCAATTTGTTTGT-CAGTAG-CCTGTCACTAT--TTCAA--AG---TGATC-----AT-ACGCAAG-A--CAA----GC-T---CT-----T--------AATAAGTTGAGAAACATAAACACCATA-----A-GAGGGTGAT-AATGGGATGCTG-CTACTTAAATATGGGACGTTGACGCTGGAGAAGCTGAAATTAAC-CAATTTATCATGAATTTGAGTTG--TTGGTTTGCCGTTAATGTCTGTGTTCAATATAATAACTATGT-ACAAATCAGACGTGGAAGACTTTGTGGCGTT
gi|2 : CAATTTAACACAGAAATACAAACAAGGTGGA---------AAACACGACCCCCTGGGCAC----------CA-GAGG---GAT-AGTATGCACTA--ATGATAC--------AGCATCCC-TGTCGAC-GGTCACAC------CC-GCCGTCCCATTT--T-TTACACT--G-CC----A-GGTAAA-A----C---GG----TGTAACTCTG--GCAA---AAA-TC--GATGCTAGAAAAAACT-A------T-AACAT--TG-CTTATGA--CACATCAAC-A---ACC-ATTT-A---C---CAA--------GCAGG---GTAAT--TGC-A-AAACT-A------CG-TCTATT-AC--AC-CATA-G------ATTTTACGAAT----T------C-T----TAGTCTTAACACGGCATTTA-AACCCCTGCAACAACAACTTGTTTGT-AAGTAGTCCT----CTA---TTCAAACAC---TGCTC-----A--ACGCAGA-ACCCAGCCTTGC-T---AT-----TCG------AATAAG-TGAGAA--ATACAC-CCATAT----A-CAGG--GAT-GAT-GAATATTGCCTACATAAA----GTAAGTTG-CG-TGGAGAAGCTGA---TGCCTCCGTTCAT----------AGTTACTTTACTTTG-CATTCATGTCTATGTCAAA---AAT-ACCAAGTCACGAA-CAGACATGGAAG-CTCT-TGGTGT
gi|7 : aaaccatggacaattctcgA-ATAGAA-TAC----AGAATA-AGAGTTGGGCAAACAAG--ACCCTGGA------------CCACGAAGTGGGATCAGTGCG----T--AGGATAGG-----TAAGTATC---TGTCGACCGGTC-TAA-----CCC-ACTG-GG-ATCC--A-CTGT-CT--G-TTTC--A-GGAAAA-G--------GG----AGTAATTCCGTAATCAGAAAAA-TC-AG-TG-TATAAAAAACG-G----C-TTAACAA--TTTCTTACGAAGCACTTAACA-AG----C-ATTTGA---C---CAA--------TTAA---TGTA-CAATGG-C-AAGCT-AG--AATCGCT-TACA-ACGGACGCGTA-AATTTG--------GAAA----TACTGGCC-T----TC-----AACGTGATT-TTGAGAGCC-TGCAACAACAACACGTTTGC-AAGTAG-CCTG---CTGTGATTAAA--AATC-TTATT-----AT-ATGCAAA-A--CAA----GCATG--CT-----A--------AATAAGcctttattctatgtgggttttttttaattcg
gi|6 : aacagtgattgggtctgaaaagttcA-ATAGAA-TAC----AGAATA-AGAGTTGGGCAAACAAG--ACCCTGGA------------CCACGAAGTGGGATCAGTGCG----T--AGGATAGG-----TAAGTATC---TGTCGACCGGTC-TAA-----CCC-ACTG-GG-ATCC--A-CTGT-CT--G-TTTC--A-GGAAAA-G--------GG----AGTAATTCCGTAATCAGAAAAA-TC-AG-TG-TATAAAAAACG-G----C-TTAACAA--TTTCTTACGAAGCACTTAACA-AG----C-ATTTGA---C---CAA--------TTAA---TGTA-CAATGG-C-AAGCT-AG--AATCGCT-TACA-ACGGACGCGTA-AATTTG--------GAAA----TACTGGCC-T----TC-----AACGTGATT-TTGAGAGCC-TGCAACAACAACACGTTTGC-AAGTAG-CCTG---CTGTGATTAAA--AATC-TTATT-----AT-ATGCAAA-A--CAA----GCATG--CT-----A--------AATAAGatat
gi|4 : aacagtgattgggtctgaaaagttcCA-AAAGTGAGACAAG-GTG----CCTATGAAA--A---GTAAGCATTCCCTGTCGACC-----CA--------T-GTGGGGA-GTCTA-TATTGT-CTT-G-ATC---A-GGTAAA-C--------GG----AGTCA-TCCGTAGTCA---GAA-T--AAGTG-CATAAAGAGCG-G----C-TTAACAA--TT-AATATGAAACA-----------------TTTGA---TC--CACT--G----GCAAG-TTGTA-C--TGG-C-AAACT-AG--A-TCG-T-TACA-ACG-AC-CA------TTGAAAAT-GCAAAACGT-T----GACTT----TA-----AACGTGAGTGTT-CAATTCTTGCAACATGGATTTGCATAT-CAGTAG-TCTGCCTCGGT--T--AA--AACATTGGTCTTCAAAT-GCATGAGAA--CAA----GC-T---CT-----TGCATATCGAATCAGTTGGGAGAGATAAATACCGCA-----T-GCTGATGAT-GATGGCATATTG-CTACATAAATATATCCAGTTGACGATAGAGAAGCTGAA-------------ATCATAGAGTTGGGTTG--TTAGTTTACCGTTAGTatat
gi|5 : acccctggacatgg-GAAGCAGGATCAG--TG----CC-ATGA--GGA---GTAAGCATCCTCTGCTGACCGGTCACA------CCC-G-CGTGA-GCCC--T-TAGT-C---G-AA----A---TAAA-G----AAACGG----GATT-ACCCGTAGC-----AAA-TCTAG------TAGGAAATG-ACAGTC-T-ACAAA--GG-AATTTGAAACAAATC--A-AGTCAAC-ATATGA---CT--TGAA--GTGACATA-T-TTGTA-A--TCG-C-AAACA-AGGCA-TC----TATAGAC--AC-CGTA------GAATT--GCGAAA----T----GAT-GACTTTA-----AACGAGATTCTTATAACCCTTGCAGCATCAA--CGTTTGT--AGTAG-a
gi|12 : aatcgtatgtttcctacagattgatgtaattcatatcatacaaaaggcgaagttaacattgtgtcaaacgtaatcataatcccaaaactatacaaaatcgagtgtagggcaacacggacctccgacaaaagcAGGCAGGATCAG-GTG----CC-ATGG-AGGA---GTAAGCATCCTCTGCTGACCGGTCACA------CCC-GCCGTGA-ttggcctcgcttagaagctcttgcgtatcgaatcaattgggaga
gi|3 : ttgatacaaatataaataggcggagttatcaccgtgctaaaagtaatcataatccaataacatatgcatatatgcacaaagtcaagtgtagggcaacacggacctccgacaaaagcgaAGATCAG-GTGCC--A--AGGA--AGA---GTAAGCATCCCCTATCGAGACGTTAC-T-----CCT-GCCGTGA-GCCT--A-TTGT-TT--TCATC---A-GGTAA-------A---CG----GGGCAGTCCATCGTCA---AAAGTT---GTG-TATAAAAATC-----------------------TTTTAAACAAATCATA---C-AGC-ATTTTAAC-CA--C----------------------C--TGG-C-TAACT-AA--A-TCA-C-TATT-AAA-AC-CATA-G------ATTTTACGAAA----T----GCT-GGCTTTA-----AATTTTACTGTTAAAATTCCTCTAACA---ACTTGTTTGT-AAGTAG-CCTG---CT-------------------TC-----AT-GCACAGA-A--CAA----GC-T---CTGTATATCA------AATAAGTTGAGAGACATGAACACCATA------------TG-C-A--GGAATGTTA-CTACATAAATATGGTAAGTTGACGATGGAGAAGCCG------------TTTGCCATAAAGCCGATTTG--TCAGATTGCTGTTAATATATATGTTCAATGAAATATCCAAGT-ACGAAGC-TACGTGAATGACTTTGTGGg
gi|47 : aacagtgatcaatgttgtaaattttagacataatacaaaataagaattgggcaaacacgggcacttaaatacatcAGGA---GTAAGCA-CCTCTGCTGACCGATCACAaatctgttatttctagtgtactgagatttttcgaatcg
gi|22 : gAGGAAGTGTAAGTATTTTCTGTCGAAAGGTCAC-------ACCTGATGTAA-ACCA--T-ATAT-GTTAG-GC----A-GGTAAcc
gi|41 : ggtataacacggatccctacgtcaaatgtcaCCCTGTCGAACGGTCACAT------CC-GCCGTAA-GTCC--A-TTTT-CT--ac
gi|46 : atCTCCGCCGACCGGTCACA------CCC-GCCGTGA-GTcacaccgcc
gi|11 : CACAGGGGGCACC-GCCATAG-AGCTAGC-TTAT-CTA-G-AT----A---CAAG-ACTACA---TG----AGT--ATC-GTAGTCG---AAA-TC-A-GTG-TTTACAAAAAG-A----C-T-GGAAAGTTC-GGTAT-AAACATG-CGCA-ACTCAGTGATTTGAGTTCG--CCAATGG----GCAGGTTTTTA-T--TGGAC-AAACTAAA--A-TCG-A-TATA-ACgtgagt
gi|25 : CGTGA-GCCC--A-TTGT-CT-----TCCCAA-GGTAAATG----A---AGTATCAGT-ATTCCGTAGTCA---AAA-TC-A-GTG-TATGAGAAAAGTT----T-T-AACAA--Tatttccacaaatt
gi|35 : a-TTGT-CTT-G-AT--------CAAG-G----A---AAT---AGCCAACCCATAGTCA---AAA-TC-A-GTG-TATAAtcctatga
gi|23 : agtcttatataT--G-AT----AAGGTAAA-C----A---A-----AGC-AATCCGTAGTC----AAA-TC-A-GTG-TATGGAAAACG-G----CTT-AAC
gi|21 : ggctcacgtggggtgtgatccatgagcttattgcctTAATTCGTAGTCA---AAA-TC--CATA-TCTAACCAGCG-T----C-CGAACAA--TG-GGCATAGAACACGCCCTATAGT-CGCTAATTAAC--CA--CAAA--C----GTAAC-TCGTA-G--TAA-C-AA
gi|30 : AGCG-T----C-T-AGCAA--TT-GGTATGAAACACGCCAGA-A-C-ACC-ATATGA---AATCCAAA--A----GCAGG-TTGTA-T--TGG-T-A
gi|31 : ATAA--TT-ATTATAAAACACGTC--------CGT-ATATGC---TG--CAAT--G----GAAGG-TTGTA-T--T-G-C-AAACT-AG--C-TC--T-TATA-AC
gi|37 : -AGC-ATTTGA---CC--TAAC--G----GCAGG-GCATA-CA-TGG----AACT-AA--A-TCG-T-TATA-GCG-AC-CATA-A
gi|44 : TGA---TC--TAAT--G----GCAGG-TTGTA-T--TGA-C-AAACT-AA--A-GCG-T-TATA-
gi|14 : ---CA--CAAA--AT---GAAGG-TTGTA----CGA-CAAAACC-AG--A-TCG-T-TGTA-ACA----CATAGA----GA---TAGCGAAAATGCT----GAT-T----CA-----AACGAGAC---TATGAACA--GTAACATCAATTTTATTGTCCAGTAA--CTATCTCGAT--TT
gi|48 : AGG-TTGTA-C--TGG-C-AAACT-AG--A-TCG-T-TATA-
gi|26 : cTGTA-T--TAG-C-AACCT-AG--A-TAG-T-TATA-ACA-AC-CAT
gi|45 : tagtcggaattggtgcacgaagaacggcctatcgatttacatgaaactcgta-----AACCCGACTATTTAAACCCCTGCAA---CAACTTGTTTGT-
gi|15 : GT-CAGTAG-C-TGCCACGAT-----AA--AACC-TGATC-----ATGACACAGA-A--CAA----GC-TAATTT-----TGCACCG--AATCAGTTGAG-AGTATAAACAACATACCGGTATGCAGGTAATCGATGGAATGTTG-aa
24 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TAAAAAACGAAGAAACAGTGGGTTCAACAACGTAATCCATAGCAAAAAAACAATAACAAAAAAATCCAGGTGGTAGAAGCAAACACGACTCGAACAAAGTCACAGAGACACATGCCATGAGAGAAGTATCCCTGCTGACTGGGGGCAACTCATCCGGAGAGCCTCTTTAGGCGAAATAAAGAAACAAGGACCTAGCAACGTAGGAGAAAATCTACAGGCACAAAGAGAGTAAACAAAGCATCAACAAGATAGACTGAGGAAAAGGTAACGCAACAAAAAGTAGACAACGGAAAGGCTAAAGTTGTTAGATGATTAATCGATAATGCTAGATAATCCTCTTGCAG
Unaligned ( gi|9 ): TTATACGAGATTTCGAGTAGTAGGATTATCAGGGGCTTCGACTTGCGTGATGGGTAGATGCCCATGGAGTATTTGTAGCCTTCTTCGCTGGGACGTTCTGGTCGCGACGCTGTGAGTCGTTAGTCCGGATATAATAATTGCAACGGGGTTAACCTATCTAGTAGTATAAATTGACATGGGGGTGGGCATAATAATAAAGTATGAAACAATAAGCCAATTTATTTTGACTTGTGATATATTTGTAATGGGGAAGTAAGGCTTAATCT
Unaligned ( gi|10 ): CAAGATATACAAAGTTGGTGTTGCAAACGCGAATCTCGCAAAAATGAGACAGGTGTCTGTGTCACGTGTAAATCCTTGCTGACGCAGTCAACCGCTACCCTTAGTGAAGTTAAGTAATCGGCCTAGTCGATCTATTATAAATGAGGTTGAACCTATGAGTTGAATGATTATTTTTCGCACAGGTCTTATAGCGTCGTGAATTGCGAAATCATGACATTTAAA
Unaligned ( gi|13 ): AAGGACGAAGTAACGATTTGTGTCAAACGTACCATCATTTAATCCAAAAAAAAAAAACTCATATTAGCAAATAAACTCATGGAAAGTGTAAGGAACACACTACGGACCCCTCCGACAAAATGCGATAGGTAGTATATCAGTAAAAGTGCCTAATGTAGGTAGCTAAACATCCCTGCTGA
Unaligned ( gi|16 ): CATAACAACAGGCGAAATTAACATTTGTCTCAAACGTAGTCATATCCAATAGCGATAGTACCACGATTCAAGGTGTAGGTTCATCAAGGATCCGTCATACAATAAGCGTA
Unaligned ( gi|17 ): TGTAAGTTTTCAATTCTTTCTTATATACAACATGTATTTGCATATGCATTCTAGTGTATTTTCGGTTTCTTGAAATATATTGATTGTCAAATGCAACAATGAAGACA
Unaligned ( gi|18 ): AACATTTGAGTCAAAGTAATATAATTCCAAAAAAAAAAAAACAAATTACCAAAATAGATGATAGGCAACCACGATCCCGACAAAGCGAAGGAGGATTAGGGCCATTA
Unaligned ( gi|19 ): TTTTCTTGTATTACATAAATATCCTTATAACATACACTTGCTAGTAAGTAGCCTACATATCATCTGATCAATATGCTCGAGAGACACCAACGCCATATACAGGA
Unaligned ( gi|20 ): ATAGTCCAAAAAACTAATATATCATATCATATGCGATGAGCTAGAGCATACCGAGAGCAACACGGACCTCTCACACAAAAAAGTCGAAGGTAGGATCAGTGT
Unaligned ( gi|24 ): ATGAACCATGATCAATTAGAATTTAACACAATATAAAAGTTAGACAAACGTGGACCCCTATATATACCAGAGGTGCTGAGAAGGAATAACCA
Unaligned ( gi|27 ): TTGGATCAGGGTGCCAAAGAGGTAAGTATCCCTGTTGACATGTTCACACCCGTTCCTGAGCTTTCTATCTTCATCAGGTA
Unaligned ( gi|28 ): AAAGAGCGGTCTAAGAATTGGTATGAAACACGTTTGACAGAATAAATCCAAGTGGCACTTTGCACTTGCAAATCCGA
Unaligned ( gi|29 ): AACGTATTTTCCCACGATATTTATATATCCAAATATAACATACAAAAAGGCGAAGTTATCACTGTGTCAA
Unaligned ( gi|32 ): AGGATCGGTGCAATTGGAGGATAAATACATCCTCTGCTGATCCGGGTCATCATTGCGTGAGCCGTAG
Unaligned ( gi|33 ): AAGAACGGTCTGACAATTAGTATGAAACACTTACTGATTGTATTTGTAAATTAGATCTGAATACAA
Unaligned ( gi|34 ): CAGCGTAGATGTTGCGAACGGATGACTTTCTAAACGAGAGATCGGCCATTAAACCCTTGCAACATC
Unaligned ( gi|36 ): TTGCAGTTAATATATATGTTTAATAAACTATCTAAGTACAAGGAAGTTGTGGAAAAC
Unaligned ( gi|38 ): GCAAAGTTAACATTGCATTAAACGTAATCATATAAAAAGTTGAGTGTATGGCA
Unaligned ( gi|39 ): TATCTCAATCAGGTAAACGGAGTAATCTGCAATCAAAATAAAGTATATTAA
Unaligned ( gi|40 ): CACAGAATAATTCGTAATCGAAATCAGTGTTTACAAAAAGACCTAGGAAA
Unaligned ( gi|42 ): CTTGATCAGGTAAATGTAGTTGTCCGTAGTCAAATAAATGATAAAAA
Unaligned ( gi|43 ): ATACATAACCAACTCATGCATATCGAATCAGTTGAGAGAGATGAA
Unaligned ( gi|49 ): ATACAAAAGGCGAAGTTAACATTGTGTCA
Unaligned ( gi|50 ): ATACAAAAGGCGAAGTTAACATTGTGTCA
Alignments
lowQualScore : 1 1 11 44444444444444444444444 33333333333333333333333333 333333333 222222222222 111 22 11111 4444444444444444444444444444444 111 11 4444444444 55555555555555555555 1 44444444444444444444 88888888888888888888 55555555555555555 66666666666666666666666 111111 11 111 1 2 1
lowQualScore : 0 0 8 6 5 4 1 8 8 1 66 77 66 66 44444444444444444444444 66 33333333333333333333333333 6 3 3 44 22 1 999 77777 222222222 3 444444444444 4 4 111 3 33 3 3 2 88888 2 99 22 0 4444444444444444444444444444444 222 55555 99 2 2 2 2 99 5 2 2 44 0000000000 3 5 2 55555555555555555555 4 7 4 4 88 8 0 3 4 00000000000000000000 888 5 55 888 5 66666666666666666666 0 11 0 55555555555555555 8 3 0 0 3 9 66666666666666666666666 999999 33 2 1 11 000 4 3 5 88 1 7 0 6
lowQualScore : . . . . . . . . . . .. .. .. .. ....................... .. .......................... . . . .. .. . ... ..... ......... . ............ . . ... . .. . . . ..... . .. .. . ............................... ... ..... .. . . . . .. . . . .. .......... . . . .................... . . . . .. . . . . .................... ... . .. ... . .................... . .. . ................. . . . . . . ....................... ...... .. . . .. ... . . . .. . . . .
lowQualScore : 6 6 0 7 7 0 4 9 9 4 33 99 99 99 99999999999999999999999 11 99999999999999999999999999 5 1 1 22 99 0 666 77777 222222222 6 444444444444 9 9 777 3 77 3 3 9 11111 9 66 00 2 6666666666666666666666666666666 999 33333 44 5 5 7 9 66 7 9 9 99 2222222222 6 0 5 55555555555555555555 4 8 8 0 11 8 7 1 4 11111111111111111111 888 0 44 888 7 33333333333333333333 8 88 8 22222222222222222 0 2 2 8 2 2 55555555555555555555555 222222 88 5 0 77 000 0 3 0 33 0 3 7 7
consensus : CAATTTAA-ACAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACG-AG--ACCC--TGG--A------------C----CA---CGAAG-CGGGATCAG-TGCGC-C--ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAC-CCG--CCGTGAGCCCAT---TGT-----CT-G-AT----A-GGTAAA-GA---GG----AGTCANTCCGTAGTC---AAAA-TCAGGT-G-TATAAAA-AACG-G-C-T-AACAA--TTNNTATGAAACACGTC--A-CAA-----AGC-ATTTGA---C----CAA-TGGCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CGTAA--T-GAATTT-GCGAAA----T--T-G----CC----TTAAACGCGACT-TTGAA-ACCCCTGCAACATCAACTCGTTTGTAAGTAG-CCTGC--C-T-GT--TT-AAAAN-CTGA---TC-AT-ACGC---AGAA-CAAGC--TGCT-----T--------AATAAGTTGAGAGANATAAACACCATAT----A-GCAGGTGA-TGATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCGA----TTCG-TCATAAAGTCGAGTTG--TTAGTTTGCCGTTAATGTCTATGTTCAATGAAATA-CCAAGT-ACGAA-CAGACGTGGAAGACTTTGTGGCGT
Reference ( family-1200 ) : CAATTTAA-ATAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACA-AG--ACCC--TGG--A------------C----CA---CGAAG-CGGGATCAG-TGCGC-C--ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAC-CCG--CCGTGAGTCCNT---TGT-----CT-G-AT----A-GGTAAA-GA---GG----AGTNANTCCGTAGTC---AAAA-TCAGGT-G-TATAAAA-AACG-G-C-T-AACAA--TTNNTATGAAACACGTC--A-CAA--G--AGC-ATTTGA---C--G-CAA-NGGCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CGTAA--TTGAATTT-GCGAAA----T----G----NC----TTAAACGCGACT-TTAAA-ANCCCTGCAACANCAACTCGTTTGTAAGTAG-CCTGC--C-T-GT--TT-AAAAC-CTGA---TC-AT-ACGC---AGAA-CAAGC--TGCT-----T--------AATAAGTTGAGAGANATAAACACCATAC----A-GCGGGTGA-CGATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCGA----TTCG-TCATAGAGCCGAGTTG--TTAGTTTGCCGTTAATGTNTATGTCNAATGAAATANCCAAGTCACGAAGCANACGTGGANGACTCTGTGGTGT
gi|1 : CAATCTAA-ACGGAA-TACCAGAGT-AA---------AA-ACA-AGGAACCT--TGG--ATACTAGTAATGAC----CA----GAGG-TGAGATCAGGTG-G-----ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAGACCG--CCGTGAATCCTT---TAT-----CT-G-AT----A-GGTAAG-GA---GG----AGTTAATCCGTAGTC---AAAA-TCAGGT-G-TATAAAG-AACG-A-C-T-AACAA--TGAGTATAAAACACGTC--A-TAA--GT-AGC-ATTTGA---C--A-CAA-AGGTA-GG-TTGTAT--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CATAACTTTGAATTTCGCGAAA----T----G----AC----GTAAACGTGACTGTTGTG-ACCCCTGTAACATCAATTTGTTTGTCAGTAG-CCTGTCAC-T-AT--TT-CAAA--GTGA---TC-AT-ACGC---AAGA-CAAGC--T-CT-----T--------AATAAGTTGAGAAACATAAACACCATA-----A-GAGGGTGA-TAATGGGATGCTG-CTACTTAAATATGGGACGTTGACGCTGGAGAAGCTGAAATTAACCAA----TTTA-TCATGAATTTGAGTTG--TTGGTTTGCCGTTAATGTCTGTGTTCAATATAATAACTATGT-ACAAATCAGACGTGGAAGACTTTGTGGCGT
gi|11 : CGTAGTC---GAAA-TCA-GT-G-TTTACAA-AAAG-A-C-T-GGAAAGTTCGGTAT-AAACATG-C--G-CAACTC--AGTGATTTGAGTTC--GCCAATGGGCA-GGTTTTTAT--TGGAC-AAA-CTAAA--ATCG-A-TATA-AC-t
gi|12 : cacagggggcaccgccatagagctagcttatctagatacaagactacatgagtatAC-AAAGTCAAGTGTAGGGCAACACG--G--ACCT--CCG--A------------C----AAAAGCGAAGGCAGGATCAG--GTGC-C--ATGG-----AGGA---GTAAGCATCCTCTGCTGAC-CGGTCACAC-CCG--CCGTGAGatttccacaaatt
gi|14 : ttgatacaaatataaataggcggagttatcaccgtgctaaaagtaatcataatccaataacatatgcatatatgcA-GG-TTGTAC---GA-CAAAA-CC-AG--ATCG-T-TGTA-AC--AC-----A--TAGAGATA-GCGAAAATGCT----G----AT----TCAAACGAGACT-ATGAA-----CAGTAACATCAATT
gi|15 : cacaaaatgaGTCAGTAG-C-TGC--CAC-GA--T--AAAAC-CTGA---TC-ATGACAC---AGAA-CAAGC--TAAT-----TTTGCACCGAATCAGTTGAGAG-TATAAACAACATACCGGTATGCAGGTAATCGATGGAATGTTG-ttattgtccagtaactatctcgattt
gi|19 : TAAATATCCTTATAACATACACTTGCTAGTAAGTAG-CCTAC--A-T-AT--C-----AT-CTGA---TCAAT-ATGC---
gi|2 : ttttcttgtattacaCAATTTAACACAGAAATAC-A-AAC-AAG-GT--GGAAA-ACA-CG--ACCCCCTGGGCA------------C----CA----GA----GGGAT-AG-TATGCACTAATGAT----AC--------AGCATCCC-TGTCGAC--GGTCACAC-CCG--CCGT---CCCAT---TTTTTACACT-G-CC----A-GGTAAA-AC---GG----TGTAACTCTG--GCA---AAAA-TC-GAT-GCTAGAAAA-AACT-A---T-AACAT--TGCTTATGA--CACATC--AACAA--C----C-ATTT-A---C----CAA---GCA-GG---GTAA--TTG-C-AAAACT-A-----CG-TCTATT-AC--AC-CATA-----GATTTT-ACGAAT----TCTTAG----TC----TTAA-CACGGCA-TTTAA-ACCCCTGCAACAACAACTTGTTTGTAAGTAGTCCT----C-T-AT--TC-AAACA-CTGC---TC-A--ACGC---AGAACCCAGCCTTGCTA----TTCG-----AATAAGT---GAGAAATACAC-CCATAT----A--CAGG-GA-TGAT-GAATATTGCCTACATAAA----GTAAGTTG-CG-TGGAGAAG----------CTGATGCCTCCGTTCAT-------AGTTACTTTACTTTG-CATTCATGTCTATGTCAA---AAATA-CCAAGTCACGAA-CAGACATGGAAG-CTCT-TGGTGTtcgagagacaccaacgccatatacagga
gi|22 : aaaccatggacaattctcgGGATCCC-TACGT-C--A-AATGTCAAGGAAGTGTAAGTATTTTCTGTCGAA-AGGTCACAC-CTG--ATGTAAA-CCATATATGT-----TA-G-GC----A-GGTAAA-cctttattctatgtgggttttttttaattcg
gi|23 : ggtataacac--CCATGAGCTTAT---TGC-----CTTG-AT----AAGGTAAA-CA---A-----AG-CAATCCGTAGTC---AAA--TCAG-T-G-TATGGAA-AACG-G-CTT-AACc
gi|25 : ggctcacgtggggtgtgatCGTGAGCCCAT---TGT-----CT----TCCCAA-GGTAAATGA---AGTATCAGT-ATTCCGTAGTC---AAAA-TCA-GT-G-TATGAGA-AAAGTT-T-T-AACAA--TTCCTATGA
gi|26 : aTAGTC---GGAA-TT-GGT-G-CACGAAG-AACG-G-CCT-ATCGA--TTTACATGAAACTCGT
gi|26 : TGTAT--TAG-C-AAC-CT-AG--ATAG-T-TATA-AC-AAC-CATatgtattagcaacctagatagttataacaaccat
gi|27 : tagtcggaattggtgcacgaagaacggcctatcgatttacatgaaactcgtaGGATCAG-GGTGC-C--A--A-----AGAG---GTAAGTAT-CCCTGTTGACATGTTCACAC-CCGTTCC-TGAGCTTTC---TAT-----CT-
gi|28 : ttAAAG-AGCG-GTC-T-AAGAA--TTGGTATGAAACACGTTTGA-C-A--G--AAT-A---AA---T--C-CAAGTGGCA-CT-TTGCAC--TTG-C-AAA-tcatcaggta
gi|3 : TTTAG-ACATAA-TAC-AAAAT-AAGAATTGGGCAA-ACACGG--GCAC--TTA--A------------A----TA---C--AT-CAG-ATCAG--GTGC-C--AAGG-----AAGA---GTAAGCATCCCCTATCGAG-ACGTTACTC-CTG--CCGTGAGCCTAT---TGT-----TT-TCATC---A-GGTAAACGG---GG-------CAGTCCATCGTC---AAAAGTT--GT-G-TATAAAA-A------------------TCTT-TTAAACAAATC--A-TAC-----AGC-ATTT----------TAA-CCAC----------C--TGG-C-TAA-CT-AA--ATCA-C-TATT-AA-AAC-CATA-----GATTTT-ACGAAA----T----G----CTGGCTTTAAATTTTACTGTTAAA-ATTCCTCTAACA---ACTTGTTTGTAAGTAG-CCTGC--T-T----------------------C-AT-GCAC---AGAA-CAAGC--T-CTGTATATCA------AATAAGTTGAGAGACATGAACACCATAT------GCA----------GGAATGTTA-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCG-----TTTG-CCATAAAGCCGATTTG--TCAGATTGCTGTTAATATATATGTTCAATGAAATATCCAAGT-ACGAAGC-TACGTGAATGACTTTGTGGtccga
gi|30 : aacagtgatcaatgttgtaaat-AGCG-T-C-T-AGCAA--TTGGTATGAAACACGCC--A-GAA--C--ACC-ATATGAAATC----CAA-AAGCA-GG-TTGTAT--TGG-T-Aaatctgttatttctagtgtactgagatttttcgaatcg
gi|31 : ATAA--TTATTATAAAACACGTC----C--------GT-ATATGC---T--G-CAA-TGGAA-GG-TTGTAT--T-G-C-AAA-CT-AG--CTC--T-TATA-AC-
gi|33 : AAG-AACG-GTC-T-GACAA--TTAGTATGAAACAC
gi|35 : T---TGT-----CTTG-AT--------CAAG-GA---AAT---AGCCAACCCATAGTC---AAAA-TCA-GT-G-TATAAttactgattgtatttgtaaattagatctgaatacaa
gi|37 : agtcttatata--AGC-ATTTGA---C--C-TAA-CGGCA-GG-GCATACA-TGG----AA-CT-AA--ATCG-T-TATA-GC-GAC-CATAA--
gi|4 : CCC--TGG--A------------CATGGCA----AAAG-TGAGACAAG--GTGC-CT-ATGAA----A--A---GTAAGCATTCCCTGTCGAC-C-----CAT-GTG----GGGAGTCTATAT-TGT-----CTTG-ATC---A-GGTAAA-C----GG----AGTCA-TCCGTAGTC---AGAA-T-AAGT-G-CATAAAG-AGCG-G-C-TTAACAA--TTAATATGAAACA---------------------TTTGA---T--C-CAC-TGGCA-AG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TACA-AC-GAC-C---A--TTGAAAAT-GCAAAACGT-T----G----ACT---TTAAACGTGAGT-GTTCA-ATTCTTGCAACATGGATTTGCATATCAGTAG-TCTGC--C-TCGG--TT-AAAACATTGGTCTTC-AA-ATGCATGAGAA-CAAGC--T-CT-----TGCATATCGAATCAGTTGGGAGAGATAAATACCGCAT------GCTGATGA-TGATGGCATATTG-CTACATAAATATATCCAGTTGACGATAGAGAAG----------CTGA------AA-TCATAGAGTTGGGTTG--TTAGTTTACCGTTAGT
gi|41 : acCCCTGTCGAA-CGGTCACAT-CCG--CCGTAAGTCCAT---TTT-----CT-a
gi|44 : atTGA---T--C-TAA-TGGCA-GG-TTGTAT--TGA-C-AAA-CT-AA--AGCG-T-TATA-cacaccgcc
gi|45 : AACCCGACTATTTAA-ACCCCTGCAACA---ACTTGTTTGTAA
gi|46 : CTCCGCCGAC-CGGTCACAC-CCG--CCGTGAGT
gi|47 : ----AGGA---GTAAGCA-CCTCTGCTGAC-CGATCACAC-Cgtgagt
gi|48 : gCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-
gi|5 : A-TAC-AAAATCGAGTGTAGGGCAACACG--G--ACCT--CCG--A------------C----AAAAGCGAAG-CAGGATCAG-TGC---C--ATGA------GGA---GTAAGCATCCTCTGCTGAC-CGGTCACAC-CCG---CGTGAGCCCTT---AGT-----C--G-AA----A---TAAA-GAAACGG----GATTAC-CCGTAGC-----AAA-TC---TAG-TAGGAAATGACA-GTC-T-ACAAA--GGAATTTGAAACAAAT-----CAA--GTCAAC-ATATGA---CTTG-AAG-TGACATAT-TTGTAA--TCG-C-AAA-CA-AGGCATC----TATAGAC--AC-CGTA-----GAA-TT-GCGAAA----T----GATGACT----TTAAACGAGATTCTTATA-ACCCTTGCAGCATCAA--CGTTTGT-AGTAG-TTGGC--C-TCGC--TT-AGAAG-CT
gi|6 : aatcgtatgtttcctacagattgatgtaattcatatcatacaaaaggcgaagttaacattgtgtcaaacgtaatcataatcccaaaactAAGTTCA-ATAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACA-AG--ACCC--TGG--A------------C----CA---CGAAG-TGGGATCAG-TGCG--T--AGGAT----AG-----GTAAGTAT---CTGTCGAC-CGGTCTAAC-CCA--CTGGGA-TCCAC---TGT-----CT-G-TTTC--A-GGAAAA-G----GG----AGTAATTCCGTAATCAGAAAAA-TCA-GT-G-TATAAAA-AACG-G-CTT-AACAAT-TTCTTACGAAGCACTTA--A-CA------AGC-ATTTGA---C----CAA-T--TA-A---TGTACAATGG-C-AAG-CT-AGA-ATCGCT-TACA-ACGGACGCGTA------AATTT-G-GAAA----TACTGG----CC----TTCAACGTGATT-TTGAG-AG-CCTGCAACAACAACACGTTTGCAAGTAG-CCTG---C-T-GTGATTAAAAAT-CTTA---TT-AT-ATGC---AAAA-CAAGCA-TGCT-----A--------AATAAGcttgcgtatcgaatcaattgggaga
gi|7 : aacagtgattgggtctgaaAAGTTCA-ATAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACA-AG--ACCC--TGG--A------------C----CA---CGAAG-TGGGATCAG-TGCG--T--AGGAT----AG-----GTAAGTAT---CTGTCGAC-CGGTCTAAC-CCA--CTGGGA-TCCAC---TGT-----CT-G-TTTC--A-GGAAAA-G----GG----AGTAATTCCGTAATCAGAAAAA-TCA-GT-G-TATAAAA-AACG-G-CTT-AACAAT-TTCTTACGAAGCACTTA--A-CA------AGC-ATTTGA---C----CAA-T--TA-A---TGTACAATGG-C-AAG-CT-AGA-ATCGCT-TACA-ACGGACGCGTA------AATTT-G-GAAA----TACTGG----CC----TTCAACGTGATT-TTGAG-AG-CCTGCAACAACAACACGTTTGCAAGTAG-CCTG---C-T-GTGATTAAAAAT-CTTA---TT-AT-ATGC---AAAA-CAAGCA-TGCT-----A--------AATAAGatat
21 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TAAAAAACGAAGAAACAGTGGGTTCAACAACGTAATCCATAGCAAAAAAACAATAACAAAAAAATCCAGGTGGTAGAAGCAAACACGACTCGAACAAAGTCACAGAGACACATGCCATGAGAGAAGTATCCCTGCTGACTGGGGGCAACTCATCCGGAGAGCCTCTTTAGGCGAAATAAAGAAACAAGGACCTAGCAACGTAGGAGAAAATCTACAGGCACAAAGAGAGTAAACAAAGCATCAACAAGATAGACTGAGGAAAAGGTAACGCAACAAAAAGTAGACAACGGAAAGGCTAAAGTTGTTAGATGATTAATCGATAATGCTAGATAATCCTCTTGCAG
Unaligned ( gi|9 ): TTATACGAGATTTCGAGTAGTAGGATTATCAGGGGCTTCGACTTGCGTGATGGGTAGATGCCCATGGAGTATTTGTAGCCTTCTTCGCTGGGACGTTCTGGTCGCGACGCTGTGAGTCGTTAGTCCGGATATAATAATTGCAACGGGGTTAACCTATCTAGTAGTATAAATTGACATGGGGGTGGGCATAATAATAAAGTATGAAACAATAAGCCAATTTATTTTGACTTGTGATATATTTGTAATGGGGAAGTAAGGCTTAATCT
Unaligned ( gi|10 ): CAAGATATACAAAGTTGGTGTTGCAAACGCGAATCTCGCAAAAATGAGACAGGTGTCTGTGTCACGTGTAAATCCTTGCTGACGCAGTCAACCGCTACCCTTAGTGAAGTTAAGTAATCGGCCTAGTCGATCTATTATAAATGAGGTTGAACCTATGAGTTGAATGATTATTTTTCGCACAGGTCTTATAGCGTCGTGAATTGCGAAATCATGACATTTAAA
Unaligned ( gi|13 ): AAGGACGAAGTAACGATTTGTGTCAAACGTACCATCATTTAATCCAAAAAAAAAAAACTCATATTAGCAAATAAACTCATGGAAAGTGTAAGGAACACACTACGGACCCCTCCGACAAAATGCGATAGGTAGTATATCAGTAAAAGTGCCTAATGTAGGTAGCTAAACATCCCTGCTGA
Unaligned ( gi|16 ): CATAACAACAGGCGAAATTAACATTTGTCTCAAACGTAGTCATATCCAATAGCGATAGTACCACGATTCAAGGTGTAGGTTCATCAAGGATCCGTCATACAATAAGCGTA
Unaligned ( gi|17 ): TGTAAGTTTTCAATTCTTTCTTATATACAACATGTATTTGCATATGCATTCTAGTGTATTTTCGGTTTCTTGAAATATATTGATTGTCAAATGCAACAATGAAGACA
Unaligned ( gi|18 ): AACATTTGAGTCAAAGTAATATAATTCCAAAAAAAAAAAAACAAATTACCAAAATAGATGATAGGCAACCACGATCCCGACAAAGCGAAGGAGGATTAGGGCCATTA
Unaligned ( gi|20 ): ATAGTCCAAAAAACTAATATATCATATCATATGCGATGAGCTAGAGCATACCGAGAGCAACACGGACCTCTCACACAAAAAAGTCGAAGGTAGGATCAGTGT
Unaligned ( gi|21 ): TAATTCGTAGTCAAAATCCATATCTAACCAGCGTCCGAACAATGGGCATAGAACACGCCCTATAGTCGCTAATTAACCACAAACGTAACTCGTAGTAACAA
Unaligned ( gi|24 ): ATGAACCATGATCAATTAGAATTTAACACAATATAAAAGTTAGACAAACGTGGACCCCTATATATACCAGAGGTGCTGAGAAGGAATAACCA
Unaligned ( gi|29 ): AACGTATTTTCCCACGATATTTATATATCCAAATATAACATACAAAAAGGCGAAGTTATCACTGTGTCAA
Unaligned ( gi|32 ): AGGATCGGTGCAATTGGAGGATAAATACATCCTCTGCTGATCCGGGTCATCATTGCGTGAGCCGTAG
Unaligned ( gi|34 ): CAGCGTAGATGTTGCGAACGGATGACTTTCTAAACGAGAGATCGGCCATTAAACCCTTGCAACATC
Unaligned ( gi|36 ): TTGCAGTTAATATATATGTTTAATAAACTATCTAAGTACAAGGAAGTTGTGGAAAAC
Unaligned ( gi|38 ): GCAAAGTTAACATTGCATTAAACGTAATCATATAAAAAGTTGAGTGTATGGCA
Unaligned ( gi|39 ): TATCTCAATCAGGTAAACGGAGTAATCTGCAATCAAAATAAAGTATATTAA
Unaligned ( gi|40 ): CACAGAATAATTCGTAATCGAAATCAGTGTTTACAAAAAGACCTAGGAAA
Unaligned ( gi|42 ): CTTGATCAGGTAAATGTAGTTGTCCGTAGTCAAATAAATGATAAAAA
Unaligned ( gi|43 ): ATACATAACCAACTCATGCATATCGAATCAGTTGAGAGAGATGAA
Unaligned ( gi|49 ): ATACAAAAGGCGAAGTTAACATTGTGTCA
Unaligned ( gi|50 ): ATACAAAAGGCGAAGTTAACATTGTGTCA
Alignments
lowQualScore : 1 1 111 44444444444444444444444 33333333333333333333333333 333333333 222222222222 111 22 11111 55555555555555555555555555555555555555555555555555555 11 44444 5555555555555555 1 33333333333333 88888888888888888888 33333333 1 66666666666666666666666 111111 11 11 111 1 1
lowQualScore : 0 0 8 6 5 4 1 8 8 1 777 77 66 66 44444444444444444444444 66 33333333333333333333333333 6 3 3 44 1 3 77 88888 333333333 3 444444444444 5 4 111 3 77 3 3 2 88888 2 99 22 66666666666666666666666666666666666666666666666666666 88 2 2 2 2 99 5 2 2 11 8 1 33333 3 5 2 5555555555555555 4 3 2 4 88 6 0 3 4 66666666666666 777 888 5 55 888 5 44444444444444444444 1 1 1 44444444 0 8 5 8 3 0 0 3 9 66666666666666666666666 222222 33 2 7 11 777 3 3 7 6
lowQualScore : . . . . . . . . . . ... .. .. .. ....................... .. .......................... . . . .. . . .. ..... ......... . ............ . . ... . .. . . . ..... . .. .. ..................................................... .. . . . . .. . . . .. . . ..... . . . ................ . . . . .. . . . . .............. ... ... . .. ... . .................... . . . ........ . . . . . . . . . ....................... ...... .. . . .. ... . . . .
lowQualScore : 6 6 0 7 7 0 4 9 9 4 777 99 99 99 99999999999999999999999 11 99999999999999999999999999 5 1 1 22 2 6 99 33333 000000000 6 444444444444 7 9 777 3 88 3 3 9 11111 9 66 00 44444444444444444444444444444444444444444444444444444 88 4 4 5 7 00 7 9 9 55 0 2 11111 6 0 5 2222222222222222 4 3 9 4 00 1 7 1 4 88888888888888 111 888 0 44 888 0 99999999999999999999 7 0 7 00000000 6 0 0 0 2 2 8 2 2 55555555555555555555555 222222 88 5 3 00 777 3 3 3 7
consensus : CAATTTAA-ACAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACG-AG--ACCC--TGG--A------------C----CA---CGAAG-CGGGATCAG-TGCGC-C--ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAC-CCG--CCGTGAGCC-CAT--TGT-----CT-G-AT----A-GGTAAA-GA---GG----AGTCANTCCGTAGTC---AAAA-TCA-GT-G-TATAAAA-AACG-G-C-T-AACAA--TTNNTATGAAACACGTC--A---CAA---AGC-ATTT-GA-----C--C---AA-T-GGCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CGTA-----GAATTT-GCGAAA--TGCT----G-C---CTTAAACGCGACT-TTNA-AACCCCTGCAACATCAACTCGTTTGTAAGTAG-CCTGC--C-T-GT--TT-AAAA-NCTGA---TC-AT-ACGC---AGAA-CAAGC--TGCT-----T--------AATAAGTTGAGAGACATAAACACCATA----TA-GCAGGTGAT-GATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCGA----TTCG-TCATAAAGTCGAGTTG--TTAGTTTGCCGTTAATGTCTATGTTCAATGAAAT-A-CCAAGT-ACGAA-CAGACGTGGAAGACTTTGTGGCGT
Reference ( family-1200 ) : CAATTTAA-ACAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACG-AG--ACCC--TGG--A------------C----CA---CGAAG-CGGGATCAG-TGCGC-C--ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAC-CCG--CCGTGAGCC-CAT--TGT-----CT-G-AT----A-GGTAAA-GA---GG----AGTCANTCCGTAGTC---AAAA-TCAGGT-G-TATAAAA-AACG-G-C-T-AACAA--TTNNTATGAAACACGTC--A---CAA---AGC-ATTT-GA-----C--C---AA-T-GGCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CGTAA---TGAATTT-GCGAAA--T--T----G-C---CTTAAACGCGACT-TTGA-AACCCCTGCAACATCAACTCGTTTGTAAGTAG-CCTGC--C-T-GT--TT-AAAA-NCTGA---TC-AT-ACGC---AGAA-CAAGC--TGCT-----T--------AATAAGTTGAGAGANATAAACACCATA----TA-GCAGGTGAT-GATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCGA----TTCG-TCATAAAGTCGAGTTG--TTAGTTTGCCGTTAATGTCTATGTTCAATGAAAT-A-CCAAGT-ACGAA-CAGACGTGGAAGACTTTGTGGCGT
gi|1 : CAATCTAA-ACGGAA-TACCAGAGT-AA---------AA-ACA-AGGAACCT--TGG--ATACTAGTAATGAC----CA----GAGG-TGAGATCAGGTG-G-----ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAGACCG--CCGTGAATC-CTT--TAT-----CT-G-AT----A-GGTAAG-GA---GG----AGTTAATCCGTAGTC---AAAA-TCAGGT-G-TATAAAG-AACG-A-C-T-AACAA--TGAGTATAAAACACGTC--A---TAAGT-AGC-ATTT-GA-----CA-C---AA-A-GGTA-GG-TTGTAT--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CATAACTTTGAATTTCGCGAAA-----T----G-A---CGTAAACGTGACTGTTGT-GACCCCTGTAACATCAATTTGTTTGTCAGTAG-CCTGTCAC-T-AT--TT-CAAA-G-TGA---TC-AT-ACGC---AAGA-CAAGC--T-CT-----T--------AATAAGTTGAGAAACATAAACACCATA-----A-GAGGGTGAT-AATGGGATGCTG-CTACTTAAATATGGGACGTTGACGCTGGAGAAGCTGAAATTAACCAA----TTTA-TCATGAATTTGAGTTG--TTGGTTTGCCGTTAATGTCTGTGTTCAATATAATAA-CTATGT-ACAAATCAGACGTGGAAGACTTTGTGGCGT
gi|11 : CGTAGTC---GAAA-TCA-GT-G-TTTACAA-AAAG-A-C-T-GGAAAGTTCGGTAT-AAACATG-C--G---CAACTCAGTGATTT-GAGTTCGC--C---AA-TGGGCA-GGTTTTTAT--TGGAC-AAA-CTAAA--ATCG-A-TATA-AC-t
gi|12 : cacagggggcaccgccatagagctagcttatctagatacaagactacatgagtatAC-AAAGTCAAGTGTAGGGCAACACG--G--ACCT--CCG--A------------C----AAAAGCGAAGGCAGGATCAG--GTGC-C--ATGG-----AGGA---GTAAGCATCCTCTGCTGAC-CGGTCACAC-CCG--CCGTGAGatttccacaaatt
gi|14 : ttgatacaaatataaataggcggagttatcaccgtgctaaaagtaatcataatccaataacatatgcatatatgc---AA-T-GA-A-GG-TTGTAC---GA-CAAAA-CC-AG--ATCG-T-TGTA-AC-A---CATA-----GAGATA-GCGAAA--A--T----G-CTGATTCAAACGAGACT-ATGA-A----CAGTAACATCAATT
gi|15 : cacaaGTCAGTAG-C-TGC--CAC-GA--T--AAAA-CCTGA---TC-ATGACAC---AGAA-CAAGC--TAAT-----TTTGCACCGAATCAGTTGAGAG-TATAAACAACATACCGGTATGCAGGTAATCGATGGAATGTTG-ttattgtccagtaactatctcgattt
gi|19 : ATCCTTATAACATACACTTGCTAGTAAGTAG-CCTAC--A-T-AT--C-----A-TCTGA---TCAAT-ATGC---------------------------------------TCGAGAGACACCAACGCCATA----TA--CAGG
gi|2 : ttttcttgtattacataaatCAATTTAACACAGAAATAC-A-AAC-AAG-GT--GGAAA-ACA-CG--ACCCCCTGGGCA------------C----CA----GA----GGGAT-AG-TATGCACTAATGAT----AC--------AGCATCCC-TGTCGAC--GGTCACAC-CCG--CCGT---CC-CAT--TTTTTACACT-G-CC----A-GGTAAA-AC---GG----TGTAACTCTG--GCA---AAAA-TC-GAT-GCTAGAAAA-AACT-A---T-AACAT--TGCTTATGA--CACATC--A---ACA---ACC-ATTT--A-----C--C---AA----GCA-GG---GTAA--TTG-C-AAAACT-A-----CG-TCTATT-AC--AC-CATA-----GATTTT-ACGAA---T--TCTTAG-T---CTTAA-CACGGCA-TTTA-AACCCCTGCAACAACAACTTGTTTGTAAGTAGTCCT----C-T-AT--TC-AAAC-ACTGC---TC-A--ACGC---AGAACCCAGCCTTGCTA----TTCG-----AATAAGT---GAGAAATACAC-CCATA----TA--CAGG-GAT-GAT-GAATATTGCCTACATAAA----GTAAGTTG-CG-TGGAGAAG----------CTGATGCCTCCGTTCAT-------AGTTACTTTACTTTG-CATTCATGTCTATG-TCAA--AAAT-A-CCAAGTCACGAA-CAGACATGGAAG-CTCT-TGGTGTa
gi|22 : aaaccatggacaattctcgGGATCCC-TACGT-C--A-AATGTCAAGGAAGTGTAAGTATTTTCTGTCGAA-AGGTCACAC-CTG--ATGTAAACCATATA-TGT-----TA-G-GC----A-GGTAAA-cctttattctatgtgggttttttttaattcg
gi|23 : ggtataacac--CCATGAGCT-TAT--TGC-----CTTG-AT----AAGGTAAA-CA---A-----AG-CAATCCGTAGTC----AAA-TCA-GT-G-TATGGAA-AACG-G-CTT-AACc
gi|25 : ggctcacgtggggtgtgatCGTGAGCC-CAT--TGT-----CT----TCCCAA-GGTAAATGA---AGTATCAGT-ATTCCGTAGTC---AAAA-TCA-GT-G-TATGAGA-AAAGTT-T-T-AACAA--TTCCTATGA
gi|26 : aTAGTC---GGAA-TT-GGT-G-CACGAAG-AACG-G-CCT-ATCGA--TTTACATGAAAC---TC--G---TA-----------------------------------------TGTAT--TAG-C-AAC-CT-AG--ATAG-T-TATA-AC-AAC-CAT
gi|27 : GGATCAG-GGTGC-C--A--A-----AGAG---GTAAGTAT-CCCTGTTGACATGTTCACAC-CCGTTCC-TGAGC
gi|28 : ttAAAG-AGCG-GTC-T-AAGAA--TTGGTATGAAACACGTTTGA---CAG---AAT-AAAT--------C--C---AAGT-GGCA-CT-TTGCAC--TTG-C-AAA-tttctatcttcatcaggta
gi|3 : TTTAG-ACATAA-TAC-AAAAT-AAGAATTGGGCAA-ACACGG--GCAC--TTA--A------------A----TA---C--AT-CAG-ATCAG--GTGC-C--AAGG-----AAGA---GTAAGCATCCCCTATCGAG-ACGTTACTC-CTG--CCGTGAGCC-TAT--TGT-----TT-TCATC---A-GGTAAACGG---GG-------CAGTCCATCGTC---AAAAGTT--GT-G-TATAAAA-A------------------TCTT-TTAAACAAATC--A---TAC---AGC-ATTTTAA-----C--C---A------C----------C--TGG-C-TAA-CT-AA--ATCA-C-TATT-AA-AAC-CATA-----GATTTT-ACGAAA--TGCT----GGC---TTTAAATTTTACTGTTAA-AATTCCTCTAACA---ACTTGTTTGTAAGTAG-CCTGC--T-T----------------------C-AT-GCAC---AGAA-CAAGC--T-CTGTATATCA------AATAAGTTGAGAGACATGAACACCATA----T--GCAGG----------AATGTTA-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCG-----TTTG-CCATAAAGCCGATTTG--TCAGATTGCTGTTAATATATATGTTCAATGAAAT-ATCCAAGT-ACGAA-GCTACGTGAATGACTTTGTGGtccga
gi|30 : aacagtgatcaatgttgtaaat-AGCG-T-C-T-AGCAA--TTGGTATGAAACACGCC--A---GAAC--ACC-ATAT-GAAAT--C--C---AA-A-AGCA-GG-TTGTAT--TGG-T-Aaatctgttatttctagtgtactgagatttttcgaatcg
gi|31 : ATAA--TTATTATAAAACACGTC------C------GT-ATAT-G------CTGC---AA-T-GGAA-GG-TTGTAT--T-G-C-AAA-CT-AG--CTC--T-TATA-AC-
gi|33 : AAG-AACG-GTC-T-GACAA--TTAGTATGAAACAC-TT--A---C------------T-GA-------------------------TTGTAT--TTG-T-AAA-TT-AG--ATC
gi|35 : AT--TGT-----CTTG-AT--------CAAG-GA---AAT---AGCCAACCCATAGTC---AAAA-TCA-GT-G-TATAAtgaatacaa
gi|37 : agtcttatat---AGC-ATTT-GA-----C--CT--AA-C-GGCA-GG-GCATACA-TGG----AA-CT-AA--ATCG-T-TATA-GC-GAC-CATAA---
gi|4 : CCC--TGG--A------------CATGGCA----AAAG-TGAGACAAG--GTGC-CT-ATGAA----A--A---GTAAGCATTCCCTGTCGAC-C-----CAT-GTG----GGGAGTC-TATATTGT-----CTTG-ATC---A-GGTAAA-C----GG----AGTCA-TCCGTAGTC---AGAA-T-AAGT-G-CATAAAG-AGCG-G-C-TTAACAA--TTAATATGAAACA---------------------TTT-GAT----C--C---AC-T-GGCA-AG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TACA-AC-GAC-CAT-----TGAAAAT-GCAAAACGT--T----GAC---TTTAAACGTGAGT-GTTC-AATTCTTGCAACATGGATTTGCATATCAGTAG-TCTGC--C-TCGG--TT-AAAACATTGGTCTTC-AA-ATGCATGAGAA-CAAGC--T-CT-----TGCATATCGAATCAGTTGGGAGAGATAAATACCGCA----T--GCTGATGAT-GATGGCATATTG-CTACATAAATATATCCAGTTGACGATAGAGAAG----------CTGA------AA-TCATAGAGTTGGGTTG--TTAGTTTACCGTTAGT
gi|41 : acCCCTGTCGAA-CGGTCACAT-CCG--CCGTAAGTC-CAT--TTT-----CT-a
gi|44 : atT-GA-----T--CT--AA-T-GGCA-GG-TTGTAT--TGA-C-AAA-CT-AA--AGCG-T-TATA-cacaccgcc
gi|45 : AACCCGACTATTTA-AACCCCTGCAA---CAACTTGTTTGTAA
gi|46 : CTCCGCCGAC-CGGTCACAC-CCG--CCGTGAG
gi|47 : ----AGGA---GTAAGCA-CCTCTGCTGAC-CGATCACAC-Ctgtgagt
gi|48 : gCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-
gi|5 : A-TAC-AAAATCGAGTGTAGGGCAACACG--G--ACCT--CCG--A------------C----AAAAGCGAAG-CAGGATCAG-TGC---C--ATGA------GGA---GTAAGCATCCTCTGCTGAC-CGGTCACAC-CCG---CGTGAGCC-CTT--AGT-----C--G-AA----A---TAAA-GAAACGG----GATTAC-CCGTAGC-----AAA-TC---TAG-TAGGAAATGACA-GTC-T-ACAAA--GGAATTTGAAACAAATC--AAGTCAA-----C-ATAT-GA-----C--TTGAAG-T-GACATAT-TTGTAA--TCG-C-AAA-CA-AGGCATC----TATAGAC--AC-CGTA-----GAA-TT-GCGAAA--TGAT----GAC---TTTAAACGAGATT-CTTATAACCCTTGCAGCATCAA--CGTTTGT-AGTAG-TTGGC--C-TCGC--TT-AGAA-GCT
gi|6 : aatcgtatgtttcctacagattgatgtaattcatatcatacaaaaggcgaagttaacattgtgtcaaacgtaatcataatcccaaaactAAGTTCA-ATAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACA-AG--ACCC--TGG--A------------C----CA---CGAAG-TGGGATCAG-TGCG--T--AGGAT----AG-----GTAAGTAT---CTGTCGAC-CGGTCTAAC-CCA--CTGGGA-TC-CAC--TGT-----CT-G-TTTC--A-GGAAAA-G----GG----AGTAATTCCGTAATCAGAAAAA-TCA-GT-G-TATAAAA-AACG-G-CTT-AACAAT-TTCTTACGAAGCACTTA--A---C-A---AGC-ATTT-GA-----C--C---AA-T---TA-A---TGTACAATGG-C-AAG-CT-AGA-ATCGCT-TACA-ACGGACGCGTA------AATTT-G-GAAA--TACTG---G-C---CTTCAACGTGATT-TTGA-GA-GCCTGCAACAACAACACGTTTGCAAGTAG-CCTG---C-T-GTGATTAAAAA-TCTTA---TT-AT-ATGC---AAAA-CAAGCA-TGCT-----A--------AATAAGcttgcgtatcgaatcaattgggaga
gi|7 : aacagtgattgggtctgaaAAGTTCA-ATAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACA-AG--ACCC--TGG--A------------C----CA---CGAAG-TGGGATCAG-TGCG--T--AGGAT----AG-----GTAAGTAT---CTGTCGAC-CGGTCTAAC-CCA--CTGGGA-TC-CAC--TGT-----CT-G-TTTC--A-GGAAAA-G----GG----AGTAATTCCGTAATCAGAAAAA-TCA-GT-G-TATAAAA-AACG-G-CTT-AACAAT-TTCTTACGAAGCACTTA--A---C-A---AGC-ATTT-GA-----C--C---AA-T---TA-A---TGTACAATGG-C-AAG-CT-AGA-ATCGCT-TACA-ACGGACGCGTA------AATTT-G-GAAA--TACTG---G-C---CTTCAACGTGATT-TTGA-GA-GCCTGCAACAACAACACGTTTGCAAGTAG-CCTG---C-T-GTGATTAAAAA-TCTTA---TT-AT-ATGC---AAAA-CAAGCA-TGCT-----A--------AATAAGatat
21 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TAAAAAACGAAGAAACAGTGGGTTCAACAACGTAATCCATAGCAAAAAAACAATAACAAAAAAATCCAGGTGGTAGAAGCAAACACGACTCGAACAAAGTCACAGAGACACATGCCATGAGAGAAGTATCCCTGCTGACTGGGGGCAACTCATCCGGAGAGCCTCTTTAGGCGAAATAAAGAAACAAGGACCTAGCAACGTAGGAGAAAATCTACAGGCACAAAGAGAGTAAACAAAGCATCAACAAGATAGACTGAGGAAAAGGTAACGCAACAAAAAGTAGACAACGGAAAGGCTAAAGTTGTTAGATGATTAATCGATAATGCTAGATAATCCTCTTGCAG
Unaligned ( gi|9 ): TTATACGAGATTTCGAGTAGTAGGATTATCAGGGGCTTCGACTTGCGTGATGGGTAGATGCCCATGGAGTATTTGTAGCCTTCTTCGCTGGGACGTTCTGGTCGCGACGCTGTGAGTCGTTAGTCCGGATATAATAATTGCAACGGGGTTAACCTATCTAGTAGTATAAATTGACATGGGGGTGGGCATAATAATAAAGTATGAAACAATAAGCCAATTTATTTTGACTTGTGATATATTTGTAATGGGGAAGTAAGGCTTAATCT
Unaligned ( gi|10 ): CAAGATATACAAAGTTGGTGTTGCAAACGCGAATCTCGCAAAAATGAGACAGGTGTCTGTGTCACGTGTAAATCCTTGCTGACGCAGTCAACCGCTACCCTTAGTGAAGTTAAGTAATCGGCCTAGTCGATCTATTATAAATGAGGTTGAACCTATGAGTTGAATGATTATTTTTCGCACAGGTCTTATAGCGTCGTGAATTGCGAAATCATGACATTTAAA
Unaligned ( gi|13 ): AAGGACGAAGTAACGATTTGTGTCAAACGTACCATCATTTAATCCAAAAAAAAAAAACTCATATTAGCAAATAAACTCATGGAAAGTGTAAGGAACACACTACGGACCCCTCCGACAAAATGCGATAGGTAGTATATCAGTAAAAGTGCCTAATGTAGGTAGCTAAACATCCCTGCTGA
Unaligned ( gi|16 ): CATAACAACAGGCGAAATTAACATTTGTCTCAAACGTAGTCATATCCAATAGCGATAGTACCACGATTCAAGGTGTAGGTTCATCAAGGATCCGTCATACAATAAGCGTA
Unaligned ( gi|17 ): TGTAAGTTTTCAATTCTTTCTTATATACAACATGTATTTGCATATGCATTCTAGTGTATTTTCGGTTTCTTGAAATATATTGATTGTCAAATGCAACAATGAAGACA
Unaligned ( gi|18 ): AACATTTGAGTCAAAGTAATATAATTCCAAAAAAAAAAAAACAAATTACCAAAATAGATGATAGGCAACCACGATCCCGACAAAGCGAAGGAGGATTAGGGCCATTA
Unaligned ( gi|20 ): ATAGTCCAAAAAACTAATATATCATATCATATGCGATGAGCTAGAGCATACCGAGAGCAACACGGACCTCTCACACAAAAAAGTCGAAGGTAGGATCAGTGT
Unaligned ( gi|21 ): TAATTCGTAGTCAAAATCCATATCTAACCAGCGTCCGAACAATGGGCATAGAACACGCCCTATAGTCGCTAATTAACCACAAACGTAACTCGTAGTAACAA
Unaligned ( gi|24 ): ATGAACCATGATCAATTAGAATTTAACACAATATAAAAGTTAGACAAACGTGGACCCCTATATATACCAGAGGTGCTGAGAAGGAATAACCA
Unaligned ( gi|29 ): AACGTATTTTCCCACGATATTTATATATCCAAATATAACATACAAAAAGGCGAAGTTATCACTGTGTCAA
Unaligned ( gi|32 ): AGGATCGGTGCAATTGGAGGATAAATACATCCTCTGCTGATCCGGGTCATCATTGCGTGAGCCGTAG
Unaligned ( gi|34 ): CAGCGTAGATGTTGCGAACGGATGACTTTCTAAACGAGAGATCGGCCATTAAACCCTTGCAACATC
Unaligned ( gi|36 ): TTGCAGTTAATATATATGTTTAATAAACTATCTAAGTACAAGGAAGTTGTGGAAAAC
Unaligned ( gi|38 ): GCAAAGTTAACATTGCATTAAACGTAATCATATAAAAAGTTGAGTGTATGGCA
Unaligned ( gi|39 ): TATCTCAATCAGGTAAACGGAGTAATCTGCAATCAAAATAAAGTATATTAA
Unaligned ( gi|40 ): CACAGAATAATTCGTAATCGAAATCAGTGTTTACAAAAAGACCTAGGAAA
Unaligned ( gi|42 ): CTTGATCAGGTAAATGTAGTTGTCCGTAGTCAAATAAATGATAAAAA
Unaligned ( gi|43 ): ATACATAACCAACTCATGCATATCGAATCAGTTGAGAGAGATGAA
Unaligned ( gi|49 ): ATACAAAAGGCGAAGTTAACATTGTGTCA
Unaligned ( gi|50 ): ATACAAAAGGCGAAGTTAACATTGTGTCA
Alignments
lowQualScore : 1 1 111 44444444444444444444444 33333333333333333333333333 333333333 222222222222 111 11111 5555555555555555555555555555555555555555555555555555 11 111111 22222 1111111 11 33333333333333 88888888888888888888 33333333 1 66666666666666666666666 111111 11 11 111 1 1
lowQualScore : 0 0 8 6 5 4 1 8 8 1 777 77 66 66 44444444444444444444444 66 33333333333333333333333333 6 3 3 44 1 3 77 88888 333333333 3 444444444444 5 4 000 44 3 3 2 77777 5 99 22 5555555555555555555555555555555555555555555555555555 88 2 2 2 2 99 5 2 2 11 7 0 111111 66 4 1 4 0 11111 777 4444444 22 1 3 3 5 4 0 3 4 66666666666666 777 888 5 55 888 5 44444444444444444444 1 1 1 44444444 0 8 5 8 3 0 0 3 9 66666666666666666666666 222222 33 2 7 11 777 3 3 7 6
lowQualScore : . . . . . . . . . . ... .. .. .. ....................... .. .......................... . . . .. . . .. ..... ......... . ............ . . ... .. . . . ..... . .. .. .................................................... .. . . . . .. . . . .. . . ...... .. . . . . ..... ... ....... .. . . . . . . . . .............. ... ... . .. ... . .................... . . . ........ . . . . . . . . . ....................... ...... .. . . .. ... . . . .
lowQualScore : 6 6 0 7 7 0 4 9 9 4 777 99 99 99 99999999999999999999999 11 99999999999999999999999999 5 1 1 22 2 6 99 33333 000000000 6 444444444444 7 5 888 00 1 1 7 33333 3 00 00 6666666666666666666666666666666666666666666666666666 88 4 4 5 7 00 7 9 9 55 3 2 111111 22 4 1 4 1 22222 888 5555555 11 0 6 6 7 7 7 1 4 88888888888888 111 888 0 44 888 0 99999999999999999999 7 0 7 00000000 6 0 0 0 2 2 8 2 2 55555555555555555555555 222222 88 5 3 00 777 3 3 3 7
consensus : CAATTTAA-ACAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACG-AG--ACCC--TGG--A------------C----CA---CGAAG-CGGGATCAG-TGCGC-C--ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAC-CCG--CCGTGAGCC-CAT--TGT-----CT-G-AT----A-GGTAAA-GA---GG----AGTCANTCCGTAGTC---AAAATCA-GT-G-TATAAAA-AACG-G-C-T-AACAA--TTNNTATGAAACACGTC--A---CAA---AGC-ATTT-GA-----C--C---AA-T-GGCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CGTA-----GAATTT-GCG-AAATGCT--G-CCTT---AAACG------CGACT-TTNA-A-ACCCCTGCAACATCAACTCGTTTGTAAGTAG-CCTGC--C-T-GT--TT-AAAA-NCTGA---TC-AT-ACGC---AGAA-CAAGC--TGCT-----T--------AATAAGTTGAGAGACATAAACACCATA----TA-GCAGGTGAT-GATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCGA----TTCG-TCATAAAGTCGAGTTG--TTAGTTTGCCGTTAATGTCTATGTTCAATGAAAT-A-CCAAGT-ACGAA-CAGACGTGGAAGACTTTGTGGCGT
Reference ( family-1200 ) : CAATTTAA-ACAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACG-AG--ACCC--TGG--A------------C----CA---CGAAG-CGGGATCAG-TGCGC-C--ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAC-CCG--CCGTGAGCC-CAT--TGT-----CT-G-AT----A-GGTAAA-GA---GG----AGTCANTCCGTAGTC---AAAATCA-GT-G-TATAAAA-AACG-G-C-T-AACAA--TTNNTATGAAACACGTC--A---CAA---AGC-ATTT-GA-----C--C---AA-T-GGCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CGTA-----GAATTT-GCG-AAATGCT--G-CCTT---AAACG------CGACT-TTNA-A-ACCCCTGCAACATCAACTCGTTTGTAAGTAG-CCTGC--C-T-GT--TT-AAAA-NCTGA---TC-AT-ACGC---AGAA-CAAGC--TGCT-----T--------AATAAGTTGAGAGACATAAACACCATA----TA-GCAGGTGAT-GATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCGA----TTCG-TCATAAAGTCGAGTTG--TTAGTTTGCCGTTAATGTCTATGTTCAATGAAAT-A-CCAAGT-ACGAA-CAGACGTGGAAGACTTTGTGGCGT
gi|1 : CAATCTAA-ACGGAA-TACCAGAGT-AA---------AA-ACA-AGGAACCT--TGG--ATACTAGTAATGAC----CA----GAGG-TGAGATCAGGTG-G-----ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAGACCG--CCGTGAATC-CTT--TAT-----CT-G-AT----A-GGTAAG-GA---GG----AGTTAATCCGTAGTC---AAAATCAGGT-G-TATAAAG-AACG-A-C-T-AACAA--TGAGTATAAAACACGTC--A---TAAGT-AGC-ATTT-GA-----CA-C---AA-A-GGTA-GG-TTGTAT--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CATAACTTTGAATTTCGCG-AAATGAC--G----T---AAACG------TGACTGTTGT-G-ACCCCTGTAACATCAATTTGTTTGTCAGTAG-CCTGTCAC-T-AT--TT-CAAA-G-TGA---TC-AT-ACGC---AAGA-CAAGC--T-CT-----T--------AATAAGTTGAGAAACATAAACACCATA-----A-GAGGGTGAT-AATGGGATGCTG-CTACTTAAATATGGGACGTTGACGCTGGAGAAGCTGAAATTAACCAA----TTTA-TCATGAATTTGAGTTG--TTGGTTTGCCGTTAATGTCTGTGTTCAATATAATAA-CTATGT-ACAAATCAGACGTGGAAGACTTTGTGGCGT
gi|11 : CGTAGTC---GAAATCA-GT-G-TTTACAA-AAAG-A-C-T-GGAAAGTTCGGTAT-AAACATG-C--G---CAACTCAGTGATTT-GAGTTCGC--C---AA-TGGGCA-GGTTTTTAT--TGGAC-AAA-CTAAA--ATCG-A-TATA-AC-t
gi|12 : cacagggggcaccgccatagagctagcttatctagatacaagactacatgagtatAC-AAAGTCAAGTGTAGGGCAACACG--G--ACCT--CCG--A------------C----AAAAGCGAAGGCAGGATCAG--GTGC-C--ATGG-----AGGA---GTAAGCATCCTCTGCTGAC-CGGTCACAC-CCG--CCGTGAGatttccacaaatt
gi|14 : ttgatacaaatataaataggcggagttatcaccgtgctaaaagtaatcataatccaataacatatgcatatatgc---AA-T-GA-A-GG-TTGTAC---GA-CAAAA-CC-AG--ATCG-T-TGTA-AC-A---CATA-----GAGATA-GCGAAAATGCT--G-ATTC---AAACG------AGACT-ATGA-A-----CAGTAACATCAATT
gi|15 : cacaaGTCAGTAG-C-TGC--CAC-GA--T--AAAA-CCTGA---TC-ATGACAC---AGAA-CAAGC--TAAT-----TTTGCACCGAATCAGTTGAGAG-TATAAACAACATACCGGTATGCAGGTAATCGATGGAATGTTG-ttattgtccagtaactatctcgattt
gi|19 : TAA-ATATCCTTATAACATACACTTGCTAGTAAGTAG-CCTAC--A-T-AT--C-----A-TCTGA---TCAAT-ATGC---------------------------------------TCGAGAGACACCAACGCCATA----TA--CAGG
gi|2 : ttttcttgtattacaCAATTTAACACAGAAATAC-A-AAC-AAG-GT--GGAAA-ACA-CG--ACCCCCTGGGCA------------C----CA----GA----GGGAT-AG-TATGCACTAATGAT----AC--------AGCATCCC-TGTCGAC--GGTCACAC-CCG--CCGT---CC-CAT--TTTTTACACT-G-CC----A-GGTAAA-AC---GG----TGTAACTCTG--GCA---AAAATCG-AT-GCTAGAAAA-AACT-A---T-AACAT--TGCTTATGA--CACATC--A---ACA---ACC-ATTT--A-----C--C---AA----GCA-GG---GTAA--TTG-C-AAAACT-A-----CG-TCTATT-AC--AC-CATA-----GATTTT-ACG-AA-TTCTTAG-TCTT---AA-CA------CGGCA-TTTA-A-ACCCCTGCAACAACAACTTGTTTGTAAGTAGTCCT----C-T-AT--TC-AAAC-ACTGC---TC-A--ACGC---AGAACCCAGCCTTGCTA----TTCG-----AATAAGT---GAGAAATACAC-CCATA----TA--CAGG-GAT-GAT-GAATATTGCCTACATAAA----GTAAGTTG-CG-TGGAGAAG----------CTGATGCCTCCGTTCAT-------AGTTACTTTACTTTG-CATTCATGTCTATG-TCAA--AAAT-A-CCAAGTCACGAA-CAGACATGGAAG-CTCT-TGGTGTa
gi|21 : aaaccatggacaattctcgAATTCGTAGTC---AAAATCC-AT-A-TCTAACC-AGCG-T-C-CGAACAA--TGGGCATAGAACACGCC--cctttattctatgtgggttttttttaattcg
gi|22 : tGGATCCC-TACGT-C--A-AATGTCAAGGAAGTGTAAGTATTTTCTGTCGAA-AGGTCACAC-CTG--ATGTAAACCATATA-TGT-----TA-G-GC----A-GGTAAA-ctatagtcgctaattaaccacaaacgtaactcgtagtaacaa
gi|23 : ggtataacac--CCATGAGCT-TAT--TGC-----CTTG-AT----AAGGTAAA-CA---A-----AG-CAATCCGTAGTC---AAA-TCA-GT-G-TATGGAA-AACG-G-CTT-AACc
gi|25 : ggctcacgtggggtgtgatCGTGAGCC-CAT--TGT-----CT----TCCCAA-GGTAAATGA---AGTATCAGT-ATTCCGTAGTC---AAAATCA-GT-G-TATGAGA-AAAGTT-T-T-AACAA--TTCCTATGA
gi|26 : aTAGTC---GGAATTG-GT-G-CACGAAG-AACG-G-CCT-ATCGA--TTTACATGAAACTCGT-----------------AT--------------------------------GTAT--TAG-C-AAC-CT-AG--ATAG-T-TATA-AC-AAC-CAT
gi|27 : GGATCAG-GGTGC-C--A--A-----AGAG---GTAAGTAT-CCCTGTTGACATGTTCACAC-CCGTTCC-TGAGC
gi|28 : ttAAAG-AGCG-GTC-T-AAGAA--TTGGTATGAAACACGTTTGA---CAG---AAT-AAAT--------C--C---AAGT-GGCA-CT-TTGCAC--TTG-C-AAA-tttctatcttcatcaggta
gi|3 : TTTAG-ACATAA-TAC-AAAAT-AAGAATTGGGCAA-ACACGG--GCAC--TTA--A------------A----TA---C--AT-CAG-ATCAG--GTGC-C--AAGG-----AAGA---GTAAGCATCCCCTATCGAG-ACGTTACTC-CTG--CCGTGAGCC-TAT--TGT-----TT-TCATC---A-GGTAAACGG---GG-------CAGTCCATCGTC---AAAAGTT-GT-G-TATAAAA-A------------------TCTT-TTAAACAAATC--A---TAC---AGC-ATTTTAA-----C--C---A------C----------C--TGG-C-TAA-CT-AA--ATCA-C-TATT-AA-AAC-CATA-----GATTTT-ACG-AAATGCT--GGCTTT---AAATT------TTACTGTTAA-A-ATTCCTCTAACA---ACTTGTTTGTAAGTAG-CCTGC--T-T----------------------C-AT-GCAC---AGAA-CAAGC--T-CTGTATATCA------AATAAGTTGAGAGACATGAACACCATA----T--GCAGG----------AATGTTA-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCG-----TTTG-CCATAAAGCCGATTTG--TCAGATTGCTGTTAATATATATGTTCAATGAAAT-ATCCAAGT-ACGAA-GCTACGTGAATGACTTTGTGGtccga
gi|30 : aacagtgatcaatgttgtaaat-AGCG-T-C-T-AGCAA--TTGGTATGAAACACGCC--A---GAAC--ACC-ATAT-GAAAT--C--C---AA-A-AGCA-GG-TTGTAT--TGG-T-Aaatctgttatttctagtgtactgagatttttcgaatcg
gi|31 : ATAA--TTATTATAAAACACGTC------C------GT-ATAT-G------CTGC---AA-T-GGAA-GG-TTGTAT--T-G-C-AAA-CT-AG--CTC--T-TATA-AC-
gi|33 : AAG-AACG-GTC-T-GACAA--TTAGTATGAAACAC-TT--A---C------------T-GA-------------------------TTGTAT--TTG-T-AAA-TT-AG--ATC
gi|34 : -CGTA-----GATGTT-GCG-AACGGAT--G-ACTTTCTAAACGAGAGATCGGCC-ATTA-A-ACCCTTGCAACATCtgaatacaa
gi|35 : cagAT--TGT-----CTTG-AT--------CAAG-GA---AAT---AGCCAACCCATAGTC---AAAATCA-GT-G-TATAA
gi|37 : agtcttatat---AGC-ATTT-GA-----C--CT--AA-C-GGCA-GG-GCATACA-TGG----AA-CT-AA--ATCG-T-TATA-GC-GAC-CATA-----
gi|4 : CCC--TGG--A------------CATGGCA----AAAG-TGAGACAAG--GTGC-CT-ATGAA----A--A---GTAAGCATTCCCTGTCGAC-C-----CAT-GTG----GGGAGTC-TATATTGT-----CTTG-ATC---A-GGTAAA-C----GG----AGTCA-TCCGTAGTC---AGAATAA-GT-G-CATAAAG-AGCG-G-C-TTAACAA--TTAATATGAAACA---------------------TTT-GAT----C--C---AC-T-GGCA-AG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TACA-AC-GAC-CATT-----GAAAAT-GCA-AAACGTT--GACTTT---AAACG------TGAGT-GTTC-A-ATTCTTGCAACATGGATTTGCATATCAGTAG-TCTGC--C-TCGG--TT-AAAACATTGGTCTTC-AA-ATGCATGAGAA-CAAGC--T-CT-----TGCATATCGAATCAGTTGGGAGAGATAAATACCGCA----T--GCTGATGAT-GATGGCATATTG-CTACATAAATATATCCAGTTGACGATAGAGAAG----------CTGA------AA-TCATAGAGTTGGGTTG--TTAGTTTACCGTTAGTa
gi|41 : acCCCTGTCGAA-CGGTCACAT-CCG--CCGTAAGTC-CAT--TTT-----CT-a
gi|44 : atT-GA-----T--CT--AA-T-GGCA-GG-TTGTAT--TGA-C-AAA-CT-AA--AGCG-T-TATA-cacaccgcc
gi|45 : AACC------CGACTATTTA-A-ACCCCTGCAA---CAACTTGTTTGTAA
gi|46 : CTCCGCCGAC-CGGTCACAC-CCG--CCGTGAG
gi|47 : ----AGGA---GTAAGCA-CCTCTGCTGAC-CGATCACAC-Ctgtgagt
gi|48 : gCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-
gi|5 : A-TAC-AAAATCGAGTGTAGGGCAACACG--G--ACCT--CCG--A------------C----AAAAGCGAAG-CAGGATCAG-TGC---C--ATGA------GGA---GTAAGCATCCTCTGCTGAC-CGGTCACAC-CCG---CGTGAGCC-CTT--AGT-----C--G-AA----A---TAAA-GAAACGG----GATTAC-CCGTAGC-----AAATC---TAG-TAGGAAATGACA-GTC-T-ACAAA--GGAATTTGAAACAAATC--AAGTCAA-----C-ATAT-GA-----C--TTGAAG-T-GACATAT-TTGTAA--TCG-C-AAA-CA-AGGCATC----TATAGAC--AC-CGTA-----GAA-TT-GCG-AAATGAT--GACTTT---AAACG------AGATT-CTTATA-ACCCTTGCAGCATCAA--CGTTTGT-AGTAG-TTGGC--C-TCGC--TT-AGAA-GCT
gi|6 : aatcgtatgtttcctacagattgatgtaattcatatcatacaaaaggcgaagttaacattgtgtcaaacgtaatcataatcccaaaactAAGTTCA-ATAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACA-AG--ACCC--TGG--A------------C----CA---CGAAG-TGGGATCAG-TGCG--T--AGGAT----AG-----GTAAGTAT---CTGTCGAC-CGGTCTAAC-CCA--CTGGGA-TC-CAC--TGT-----CT-G-TTTC--A-GGAAAA-G----GG----AGTAATTCCGTAATCAGAAAAATCA-GT-G-TATAAAA-AACG-G-CTT-AACAAT-TTCTTACGAAGCACTTA--A---C-A---AGC-ATTT-GA-----C--C---AA-T---TA-A---TGTACAATGG-C-AAG-CT-AGA-ATCGCT-TACA-ACGGACGCGTA------AATTT-G-G-AAATACTG-G-CCTT---CAACG------TGATT-TTGA-G-A-GCCTGCAACAACAACACGTTTGCAAGTAG-CCTG---C-T-GTGATTAAAAA-TCTTA---TT-AT-ATGC---AAAA-CAAGCA-TGCT-----A--------AATAAGcttgcgtatcgaatcaattgggaga
gi|7 : aacagtgattgggtctgaaAAGTTCA-ATAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACA-AG--ACCC--TGG--A------------C----CA---CGAAG-TGGGATCAG-TGCG--T--AGGAT----AG-----GTAAGTAT---CTGTCGAC-CGGTCTAAC-CCA--CTGGGA-TC-CAC--TGT-----CT-G-TTTC--A-GGAAAA-G----GG----AGTAATTCCGTAATCAGAAAAATCA-GT-G-TATAAAA-AACG-G-CTT-AACAAT-TTCTTACGAAGCACTTA--A---C-A---AGC-ATTT-GA-----C--C---AA-T---TA-A---TGTACAATGG-C-AAG-CT-AGA-ATCGCT-TACA-ACGGACGCGTA------AATTT-G-G-AAATACTG-G-CCTT---CAACG------TGATT-TTGA-G-A-GCCTGCAACAACAACACGTTTGCAAGTAG-CCTG---C-T-GTGATTAAAAA-TCTTA---TT-AT-ATGC---AAAA-CAAGCA-TGCT-----A--------AATAAGatat
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TAAAAAACGAAGAAACAGTGGGTTCAACAACGTAATCCATAGCAAAAAAACAATAACAAAAAAATCCAGGTGGTAGAAGCAAACACGACTCGAACAAAGTCACAGAGACACATGCCATGAGAGAAGTATCCCTGCTGACTGGGGGCAACTCATCCGGAGAGCCTCTTTAGGCGAAATAAAGAAACAAGGACCTAGCAACGTAGGAGAAAATCTACAGGCACAAAGAGAGTAAACAAAGCATCAACAAGATAGACTGAGGAAAAGGTAACGCAACAAAAAGTAGACAACGGAAAGGCTAAAGTTGTTAGATGATTAATCGATAATGCTAGATAATCCTCTTGCAG
Unaligned ( gi|9 ): TTATACGAGATTTCGAGTAGTAGGATTATCAGGGGCTTCGACTTGCGTGATGGGTAGATGCCCATGGAGTATTTGTAGCCTTCTTCGCTGGGACGTTCTGGTCGCGACGCTGTGAGTCGTTAGTCCGGATATAATAATTGCAACGGGGTTAACCTATCTAGTAGTATAAATTGACATGGGGGTGGGCATAATAATAAAGTATGAAACAATAAGCCAATTTATTTTGACTTGTGATATATTTGTAATGGGGAAGTAAGGCTTAATCT
Unaligned ( gi|10 ): CAAGATATACAAAGTTGGTGTTGCAAACGCGAATCTCGCAAAAATGAGACAGGTGTCTGTGTCACGTGTAAATCCTTGCTGACGCAGTCAACCGCTACCCTTAGTGAAGTTAAGTAATCGGCCTAGTCGATCTATTATAAATGAGGTTGAACCTATGAGTTGAATGATTATTTTTCGCACAGGTCTTATAGCGTCGTGAATTGCGAAATCATGACATTTAAA
Unaligned ( gi|13 ): AAGGACGAAGTAACGATTTGTGTCAAACGTACCATCATTTAATCCAAAAAAAAAAAACTCATATTAGCAAATAAACTCATGGAAAGTGTAAGGAACACACTACGGACCCCTCCGACAAAATGCGATAGGTAGTATATCAGTAAAAGTGCCTAATGTAGGTAGCTAAACATCCCTGCTGA
Unaligned ( gi|16 ): CATAACAACAGGCGAAATTAACATTTGTCTCAAACGTAGTCATATCCAATAGCGATAGTACCACGATTCAAGGTGTAGGTTCATCAAGGATCCGTCATACAATAAGCGTA
Unaligned ( gi|17 ): TGTAAGTTTTCAATTCTTTCTTATATACAACATGTATTTGCATATGCATTCTAGTGTATTTTCGGTTTCTTGAAATATATTGATTGTCAAATGCAACAATGAAGACA
Unaligned ( gi|18 ): AACATTTGAGTCAAAGTAATATAATTCCAAAAAAAAAAAAACAAATTACCAAAATAGATGATAGGCAACCACGATCCCGACAAAGCGAAGGAGGATTAGGGCCATTA
Unaligned ( gi|20 ): ATAGTCCAAAAAACTAATATATCATATCATATGCGATGAGCTAGAGCATACCGAGAGCAACACGGACCTCTCACACAAAAAAGTCGAAGGTAGGATCAGTGT
Unaligned ( gi|24 ): ATGAACCATGATCAATTAGAATTTAACACAATATAAAAGTTAGACAAACGTGGACCCCTATATATACCAGAGGTGCTGAGAAGGAATAACCA
Unaligned ( gi|29 ): AACGTATTTTCCCACGATATTTATATATCCAAATATAACATACAAAAAGGCGAAGTTATCACTGTGTCAA
Unaligned ( gi|32 ): AGGATCGGTGCAATTGGAGGATAAATACATCCTCTGCTGATCCGGGTCATCATTGCGTGAGCCGTAG
Unaligned ( gi|36 ): TTGCAGTTAATATATATGTTTAATAAACTATCTAAGTACAAGGAAGTTGTGGAAAAC
Unaligned ( gi|38 ): GCAAAGTTAACATTGCATTAAACGTAATCATATAAAAAGTTGAGTGTATGGCA
Unaligned ( gi|39 ): TATCTCAATCAGGTAAACGGAGTAATCTGCAATCAAAATAAAGTATATTAA
Unaligned ( gi|40 ): CACAGAATAATTCGTAATCGAAATCAGTGTTTACAAAAAGACCTAGGAAA
Unaligned ( gi|42 ): CTTGATCAGGTAAATGTAGTTGTCCGTAGTCAAATAAATGATAAAAA
Unaligned ( gi|43 ): ATACATAACCAACTCATGCATATCGAATCAGTTGAGAGAGATGAA
Unaligned ( gi|49 ): ATACAAAAGGCGAAGTTAACATTGTGTCA
Unaligned ( gi|50 ): ATACAAAAGGCGAAGTTAACATTGTGTCA
Alignments
lowQualScore : 1 1 111 44444444444444444444444 33333333333333333333333333 333333333 222222222222 111 11111 5555555555555555555555555555555555555555555555555555 11 111111 22222 1111111 11 33333333333333 88888888888888888888 33333333 1 66666666666666666666666 111111 11 11 111 1 1
lowQualScore : 0 0 8 6 5 4 1 8 8 1 777 77 66 66 44444444444444444444444 66 33333333333333333333333333 6 3 3 44 1 3 77 88888 333333333 3 444444444444 5 4 000 44 3 3 2 77777 5 99 22 5555555555555555555555555555555555555555555555555555 88 2 2 2 2 99 5 2 2 11 7 0 111111 66 4 1 4 0 11111 777 4444444 22 1 3 3 5 4 0 3 4 66666666666666 777 888 5 55 888 5 44444444444444444444 1 1 1 44444444 0 8 5 8 3 0 0 3 9 66666666666666666666666 222222 33 2 7 11 777 3 3 7 6
lowQualScore : . . . . . . . . . . ... .. .. .. ....................... .. .......................... . . . .. . . .. ..... ......... . ............ . . ... .. . . . ..... . .. .. .................................................... .. . . . . .. . . . .. . . ...... .. . . . . ..... ... ....... .. . . . . . . . . .............. ... ... . .. ... . .................... . . . ........ . . . . . . . . . ....................... ...... .. . . .. ... . . . .
lowQualScore : 6 6 0 7 7 0 4 9 9 4 777 99 99 99 99999999999999999999999 11 99999999999999999999999999 5 1 1 22 2 6 99 33333 000000000 6 444444444444 7 5 888 00 1 1 7 33333 3 00 00 6666666666666666666666666666666666666666666666666666 88 4 4 5 7 00 7 9 9 55 3 2 111111 22 4 1 4 1 22222 888 5555555 11 0 6 6 7 7 7 1 4 88888888888888 111 888 0 44 888 0 99999999999999999999 7 0 7 00000000 6 0 0 0 2 2 8 2 2 55555555555555555555555 222222 88 5 3 00 777 3 3 3 7
consensus : CAATTTAA-ACAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACG-AG--ACCC--TGG--A------------C----CA---CGAAG-CGGGATCAG-TGCGC-C--ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAC-CCG--CCGTGAGCC-CAT--TGT-----CT-G-AT----A-GGTAAA-GA---GG----AGTCANTCCGTAGTC---AAAATCA-GT-G-TATAAAA-AACG-G-C-T-AACAA--TTNNTATGAAACACGTC--A---CAA---AGC-ATTT-GA-----C--C---AA-T-GGCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CGTA-----GAATTT-GCG-AAATGCT--G-CCTT---AAACG------CGACT-TTNA-A-ACCCCTGCAACATCAACTCGTTTGTAAGTAG-CCTGC--C-T-GT--TT-AAAA-NCTGA---TC-AT-ACGC---AGAA-CAAGC--TGCT-----T--------AATAAGTTGAGAGACATAAACACCATA----TA-GCAGGTGAT-GATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCGA----TTCG-TCATAAAGTCGAGTTG--TTAGTTTGCCGTTAATGTCTATGTTCAATGAAAT-A-CCAAGT-ACGAA-CAGACGTGGAAGACTTTGTGGCGT
Reference ( family-1200 ) : CAATTTAA-ACAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACG-AG--ACCC--TGG--A------------C----CA---CGAAG-CGGGATCAG-TGCGC-C--ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAC-CCG--CCGTGAGCC-CAT--TGT-----CT-G-AT----A-GGTAAA-GA---GG----AGTCANTCCGTAGTC---AAAATCA-GT-G-TATAAAA-AACG-G-C-T-AACAA--TTNNTATGAAACACGTC--A---CAA---AGC-ATTT-GA-----C--C---AA-T-GGCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CGTA-----GAATTT-GCG-AAATGCT--G-CCTT---AAACG------CGACT-TTNA-A-ACCCCTGCAACATCAACTCGTTTGTAAGTAG-CCTGC--C-T-GT--TT-AAAA-NCTGA---TC-AT-ACGC---AGAA-CAAGC--TGCT-----T--------AATAAGTTGAGAGACATAAACACCATA----TA-GCAGGTGAT-GATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCGA----TTCG-TCATAAAGTCGAGTTG--TTAGTTTGCCGTTAATGTCTATGTTCAATGAAAT-A-CCAAGT-ACGAA-CAGACGTGGAAGACTTTGTGGCGT
gi|1 : CAATCTAA-ACGGAA-TACCAGAGT-AA---------AA-ACA-AGGAACCT--TGG--ATACTAGTAATGAC----CA----GAGG-TGAGATCAGGTG-G-----ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAGACCG--CCGTGAATC-CTT--TAT-----CT-G-AT----A-GGTAAG-GA---GG----AGTTAATCCGTAGTC---AAAATCAGGT-G-TATAAAG-AACG-A-C-T-AACAA--TGAGTATAAAACACGTC--A---TAAGT-AGC-ATTT-GA-----CA-C---AA-A-GGTA-GG-TTGTAT--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CATAACTTTGAATTTCGCG-AAATGAC--G----T---AAACG------TGACTGTTGT-G-ACCCCTGTAACATCAATTTGTTTGTCAGTAG-CCTGTCAC-T-AT--TT-CAAA-G-TGA---TC-AT-ACGC---AAGA-CAAGC--T-CT-----T--------AATAAGTTGAGAAACATAAACACCATA-----A-GAGGGTGAT-AATGGGATGCTG-CTACTTAAATATGGGACGTTGACGCTGGAGAAGCTGAAATTAACCAA----TTTA-TCATGAATTTGAGTTG--TTGGTTTGCCGTTAATGTCTGTGTTCAATATAATAA-CTATGT-ACAAATCAGACGTGGAAGACTTTGTGGCGT
gi|11 : CGTAGTC---GAAATCA-GT-G-TTTACAA-AAAG-A-C-T-GGAAAGTTCGGTAT-AAACATG-C--G---CAACTCAGTGATTT-GAGTTCGC--C---AA-TGGGCA-GGTTTTTAT--TGGAC-AAA-CTAAA--ATCG-A-TATA-AC-t
gi|12 : cacagggggcaccgccatagagctagcttatctagatacaagactacatgagtatAC-AAAGTCAAGTGTAGGGCAACACG--G--ACCT--CCG--A------------C----AAAAGCGAAGGCAGGATCAG--GTGC-C--ATGG-----AGGA---GTAAGCATCCTCTGCTGAC-CGGTCACAC-CCG--CCGTGAGatttccacaaatt
gi|14 : ttgatacaaatataaataggcggagttatcaccgtgctaaaagtaatcataatccaataacatatgcatatatgc---AA-T-GA-A-GG-TTGTAC---GA-CAAAA-CC-AG--ATCG-T-TGTA-AC-A---CATA-----GAGATA-GCGAAAATGCT--G-ATTC---AAACG------AGACT-ATGA-A-----CAGTAACATCAATT
gi|15 : cacaaGTCAGTAG-C-TGC--CAC-GA--T--AAAA-CCTGA---TC-ATGACAC---AGAA-CAAGC--TAAT-----TTTGCACCGAATCAGTTGAGAG-TATAAACAACATACCGGTATGCAGGTAATCGATGGAATGTTG-ttattgtccagtaactatctcgattt
gi|19 : TAA-ATATCCTTATAACATACACTTGCTAGTAAGTAG-CCTAC--A-T-AT--C-----A-TCTGA---TCAAT-ATGC---------------------------------------TCGAGAGACACCAACGCCATA----TA--CAGG
gi|2 : ttttcttgtattacaCAATTTAACACAGAAATAC-A-AAC-AAG-GT--GGAAA-ACA-CG--ACCCCCTGGGCA------------C----CA----GA----GGGAT-AG-TATGCACTAATGAT----AC--------AGCATCCC-TGTCGAC--GGTCACAC-CCG--CCGT---CC-CAT--TTTTTACACT-G-CC----A-GGTAAA-AC---GG----TGTAACTCTG--GCA---AAAATCG-AT-GCTAGAAAA-AACT-A---T-AACAT--TGCTTATGA--CACATC--A---ACA---ACC-ATTT--A-----C--C---AA----GCA-GG---GTAA--TTG-C-AAAACT-A-----CG-TCTATT-AC--AC-CATA-----GATTTT-ACG-AA-TTCTTAG-TCTT---AA-CA------CGGCA-TTTA-A-ACCCCTGCAACAACAACTTGTTTGTAAGTAGTCCT----C-T-AT--TC-AAAC-ACTGC---TC-A--ACGC---AGAACCCAGCCTTGCTA----TTCG-----AATAAGT---GAGAAATACAC-CCATA----TA--CAGG-GAT-GAT-GAATATTGCCTACATAAA----GTAAGTTG-CG-TGGAGAAG----------CTGATGCCTCCGTTCAT-------AGTTACTTTACTTTG-CATTCATGTCTATG-TCAA--AAAT-A-CCAAGTCACGAA-CAGACATGGAAG-CTCT-TGGTGTa
gi|21 : aaaccatggacaattctcgAATTCGTAGTC---AAAATCC-AT-A-TCTAACC-AGCG-T-C-CGAACAA--TGGGCATAGAACACGCC--cctttattctatgtgggttttttttaattcg
gi|22 : tGGATCCC-TACGT-C--A-AATGTCAAGGAAGTGTAAGTATTTTCTGTCGAA-AGGTCACAC-CTG--ATGTAAACCATATA-TGT-----TA-G-GC----A-GGTAAA-ctatagtcgctaattaaccacaaacgtaactcgtagtaacaa
gi|23 : ggtataacac--CCATGAGCT-TAT--TGC-----CTTG-AT----AAGGTAAA-CA---A-----AG-CAATCCGTAGTC---AAA-TCA-GT-G-TATGGAA-AACG-G-CTT-AACc
gi|25 : ggctcacgtggggtgtgatCGTGAGCC-CAT--TGT-----CT----TCCCAA-GGTAAATGA---AGTATCAGT-ATTCCGTAGTC---AAAATCA-GT-G-TATGAGA-AAAGTT-T-T-AACAA--TTCCTATGA
gi|26 : aTAGTC---GGAATTG-GT-G-CACGAAG-AACG-G-CCT-ATCGA--TTTACATGAAACTCGT-----------------AT--------------------------------GTAT--TAG-C-AAC-CT-AG--ATAG-T-TATA-AC-AAC-CAT
gi|27 : GGATCAG-GGTGC-C--A--A-----AGAG---GTAAGTAT-CCCTGTTGACATGTTCACAC-CCGTTCC-TGAGC
gi|28 : ttAAAG-AGCG-GTC-T-AAGAA--TTGGTATGAAACACGTTTGA---CAG---AAT-AAAT--------C--C---AAGT-GGCA-CT-TTGCAC--TTG-C-AAA-tttctatcttcatcaggta
gi|3 : TTTAG-ACATAA-TAC-AAAAT-AAGAATTGGGCAA-ACACGG--GCAC--TTA--A------------A----TA---C--AT-CAG-ATCAG--GTGC-C--AAGG-----AAGA---GTAAGCATCCCCTATCGAG-ACGTTACTC-CTG--CCGTGAGCC-TAT--TGT-----TT-TCATC---A-GGTAAACGG---GG-------CAGTCCATCGTC---AAAAGTT-GT-G-TATAAAA-A------------------TCTT-TTAAACAAATC--A---TAC---AGC-ATTTTAA-----C--C---A------C----------C--TGG-C-TAA-CT-AA--ATCA-C-TATT-AA-AAC-CATA-----GATTTT-ACG-AAATGCT--GGCTTT---AAATT------TTACTGTTAA-A-ATTCCTCTAACA---ACTTGTTTGTAAGTAG-CCTGC--T-T----------------------C-AT-GCAC---AGAA-CAAGC--T-CTGTATATCA------AATAAGTTGAGAGACATGAACACCATA----T--GCAGG----------AATGTTA-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCG-----TTTG-CCATAAAGCCGATTTG--TCAGATTGCTGTTAATATATATGTTCAATGAAAT-ATCCAAGT-ACGAA-GCTACGTGAATGACTTTGTGGtccga
gi|30 : aacagtgatcaatgttgtaaat-AGCG-T-C-T-AGCAA--TTGGTATGAAACACGCC--A---GAAC--ACC-ATAT-GAAAT--C--C---AA-A-AGCA-GG-TTGTAT--TGG-T-Aaatctgttatttctagtgtactgagatttttcgaatcg
gi|31 : ATAA--TTATTATAAAACACGTC------C------GT-ATAT-G------CTGC---AA-T-GGAA-GG-TTGTAT--T-G-C-AAA-CT-AG--CTC--T-TATA-AC-
gi|33 : AAG-AACG-GTC-T-GACAA--TTAGTATGAAACAC-TT--A---C------------T-GA-------------------------TTGTAT--TTG-T-AAA-TT-AG--ATC
gi|34 : -CGTA-----GATGTT-GCG-AACGGAT--G-ACTTTCTAAACGAGAGATCGGCC-ATTA-A-ACCCTTGCAACATCtgaatacaa
gi|35 : cagAT--TGT-----CTTG-AT--------CAAG-GA---AAT---AGCCAACCCATAGTC---AAAATCA-GT-G-TATAA
gi|37 : agtcttatat---AGC-ATTT-GA-----C--CT--AA-C-GGCA-GG-GCATACA-TGG----AA-CT-AA--ATCG-T-TATA-GC-GAC-CATA-----
gi|4 : CCC--TGG--A------------CATGGCA----AAAG-TGAGACAAG--GTGC-CT-ATGAA----A--A---GTAAGCATTCCCTGTCGAC-C-----CAT-GTG----GGGAGTC-TATATTGT-----CTTG-ATC---A-GGTAAA-C----GG----AGTCA-TCCGTAGTC---AGAATAA-GT-G-CATAAAG-AGCG-G-C-TTAACAA--TTAATATGAAACA---------------------TTT-GAT----C--C---AC-T-GGCA-AG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TACA-AC-GAC-CATT-----GAAAAT-GCA-AAACGTT--GACTTT---AAACG------TGAGT-GTTC-A-ATTCTTGCAACATGGATTTGCATATCAGTAG-TCTGC--C-TCGG--TT-AAAACATTGGTCTTC-AA-ATGCATGAGAA-CAAGC--T-CT-----TGCATATCGAATCAGTTGGGAGAGATAAATACCGCA----T--GCTGATGAT-GATGGCATATTG-CTACATAAATATATCCAGTTGACGATAGAGAAG----------CTGA------AA-TCATAGAGTTGGGTTG--TTAGTTTACCGTTAGTa
gi|41 : acCCCTGTCGAA-CGGTCACAT-CCG--CCGTAAGTC-CAT--TTT-----CT-a
gi|44 : atT-GA-----T--CT--AA-T-GGCA-GG-TTGTAT--TGA-C-AAA-CT-AA--AGCG-T-TATA-cacaccgcc
gi|45 : AACC------CGACTATTTA-A-ACCCCTGCAA---CAACTTGTTTGTAA
gi|46 : CTCCGCCGAC-CGGTCACAC-CCG--CCGTGAG
gi|47 : ----AGGA---GTAAGCA-CCTCTGCTGAC-CGATCACAC-Ctgtgagt
gi|48 : gCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-
gi|5 : A-TAC-AAAATCGAGTGTAGGGCAACACG--G--ACCT--CCG--A------------C----AAAAGCGAAG-CAGGATCAG-TGC---C--ATGA------GGA---GTAAGCATCCTCTGCTGAC-CGGTCACAC-CCG---CGTGAGCC-CTT--AGT-----C--G-AA----A---TAAA-GAAACGG----GATTAC-CCGTAGC-----AAATC---TAG-TAGGAAATGACA-GTC-T-ACAAA--GGAATTTGAAACAAATC--AAGTCAA-----C-ATAT-GA-----C--TTGAAG-T-GACATAT-TTGTAA--TCG-C-AAA-CA-AGGCATC----TATAGAC--AC-CGTA-----GAA-TT-GCG-AAATGAT--GACTTT---AAACG------AGATT-CTTATA-ACCCTTGCAGCATCAA--CGTTTGT-AGTAG-TTGGC--C-TCGC--TT-AGAA-GCT
gi|6 : aatcgtatgtttcctacagattgatgtaattcatatcatacaaaaggcgaagttaacattgtgtcaaacgtaatcataatcccaaaactAAGTTCA-ATAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACA-AG--ACCC--TGG--A------------C----CA---CGAAG-TGGGATCAG-TGCG--T--AGGAT----AG-----GTAAGTAT---CTGTCGAC-CGGTCTAAC-CCA--CTGGGA-TC-CAC--TGT-----CT-G-TTTC--A-GGAAAA-G----GG----AGTAATTCCGTAATCAGAAAAATCA-GT-G-TATAAAA-AACG-G-CTT-AACAAT-TTCTTACGAAGCACTTA--A---C-A---AGC-ATTT-GA-----C--C---AA-T---TA-A---TGTACAATGG-C-AAG-CT-AGA-ATCGCT-TACA-ACGGACGCGTA------AATTT-G-G-AAATACTG-G-CCTT---CAACG------TGATT-TTGA-G-A-GCCTGCAACAACAACACGTTTGCAAGTAG-CCTG---C-T-GTGATTAAAAA-TCTTA---TT-AT-ATGC---AAAA-CAAGCA-TGCT-----A--------AATAAGcttgcgtatcgaatcaattgggaga
gi|7 : aacagtgattgggtctgaaAAGTTCA-ATAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACA-AG--ACCC--TGG--A------------C----CA---CGAAG-TGGGATCAG-TGCG--T--AGGAT----AG-----GTAAGTAT---CTGTCGAC-CGGTCTAAC-CCA--CTGGGA-TC-CAC--TGT-----CT-G-TTTC--A-GGAAAA-G----GG----AGTAATTCCGTAATCAGAAAAATCA-GT-G-TATAAAA-AACG-G-CTT-AACAAT-TTCTTACGAAGCACTTA--A---C-A---AGC-ATTT-GA-----C--C---AA-T---TA-A---TGTACAATGG-C-AAG-CT-AGA-ATCGCT-TACA-ACGGACGCGTA------AATTT-G-G-AAATACTG-G-CCTT---CAACG------TGATT-TTGA-G-A-GCCTGCAACAACAACACGTTTGCAAGTAG-CCTG---C-T-GTGATTAAAAA-TCTTA---TT-AT-ATGC---AAAA-CAAGCA-TGCT-----A--------AATAAGatat
blockSeqs : C A . A C T A C ACG . CC GC CAAAAGC GC TACGTCAAATGTCAAGGAAGT C A . TT G A AT TTACA TCCCA A TGAAGTATC A C AGA A A C T GCT G GT GG GCGCAACTCAGTGATTTGAGTTCGCCAATGGGCAGGTT AA A A A A GC C C G GG G G GA . C A TAGT TCT AGAGATC GT G T T T T C T CTGTGATTA CAT TCT A TG ATG C TAATTTTGCACCG T T A CCGGTATG T C G C T A A CTGATGCCTCCGT AAAGCC CT C T TG AT C . A G
blockSeqs : . . . A C A T C AC . . . CATGGCA C TATGCACTAATGATAC C . . . A . A . TCATC . GAAACGG C A AGA G . . . TTT T T CT ATCAAGTCAACATATGACTTGAAGTGACATATT AA . . . . A C . . GG G G TT . C . GGC . A AT A . . C T A . CTGTGATTA CC . . T . . TCTTGCATATCG C C G TA T . G . T A A CCGTTTG AGAGTT . C . . A . . . .
blockSeqs : . . . A . T A . AA . . . CAAAAGC T GTGCCATGGAGGA T . . . G . . . TGATC . CGGGG C A . C . . . GCC . T GG GCCAGAACACCATATGAAATCCAAAAGCAGGT A . . . . A . . . A . G TT . C . GAC . C A T . . T A A . CCTCGGTT TC . . T . . CTTGCTATTCG T A A TA . . . . . . . CTGAAA . . .
blockSeqs : . . . G . A T . AA . . . ATAC C GTGCCAAGGAAGA C . . . G . . . GTTTC . GAAAT C T . A . . . GTC . . CC GTTTGACAGAATAAATCCAAGTGGCACTT . . . . . . . . . A . G TG . C . GAC . T T A . . C T A . CCTCGCTT AC . . A . . TCTGTATATCA T C A TG . . . .
blockSeqs : . . G . A T . G . . . CCAC T GTGCCTATGAAAA T . . . G . . . GTTTC . ACGG C G . A . . . GTC . . TA GTCCGTATATGCTGCAATGGAAGGT . . . . . . . . . A . G AA . C . GGC . T A T . . T T C . CCACGAT GC . . T . . ATGCTA . G . TG
blockSeqs : . . . . . . G . . . CCAC T GGTGCCAAAGAG C . . . G . . . TGAT . CAA T A . G . . . GTC . . GG ATCAACAACCATTTACCAAGCAGG . . . . . . . . . G . G AT . C . GGC . C G T . . C T A . CATATC TC . . T . . ATGCTA
blockSeqs : . . CCA . TGCGTAGGATAG C . . . G . . . TGAT . CGG A C . T . . . GCT . . CT TTAACAAGCATTTGACCAATTAA . . . . . . . . . G . . AT . . . GA . A C T . . C A A . CTATTC TC . . . . . .
blockSeqs : TGCGTAGGATAG . . . . G . . . GCC . GGG A T . A . . . GCT . . GG TTAACAAGCATTTGACCAATTAA . . . . . . . . . . . . A . . . GA . T T T . . . A A . CTT .
blockSeqs : TGCCATGAGGA . . . . G . . . GGC . GGG . T . A . . . AC . . AT ATCATACAGCATTTTAACCAC . . . . . . . . . . . T T G . . . . .
blockSeqs : . . . . G . . . GAA . . . A . . . TC . . AG TTTGATCCACTGGCAAGT . . . . . . . . . . G . . . .
blockSeqs : . . . . . . . A . . . TC . . AA TTACTGAT . . . . . . . . .
blockSeqs : . . . . . . . . . GC . . AA GTAT . . . . . . . . .
blockSeqs : . . A . . CT . . . . . . . . .
blockSeqs : . . . . CT . . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : ** CCAC******************* GTGCCAAGGANGG************* NNNTC**** CGG********* A* GCC** G***** GGC** N* CCCGATT******* NC* TTTTATGCCG**********
originalCons : CAATTTAA-ACAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACG-AG--ACCC--TGG--A------------C----CA---CGAAG-CGGGATCAG-TGCGC-C--ATGAT----AGGA---GTAAGCATCCCCTGTCGAC-CGGTCACAC-CCG--CCGTGAGCC-CAT--TGT-----CT-G-AT----A-GGTAAA-GA---GG----AGTCANTCCGTAGTC---AAAATCA-GT-G-TATAAAA-AACG-G-C-T-AACAA--TTNNTATGAAACACGTC--A---CAA---AGC-ATTT-GA-----C--C---AA-T-GGCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CGTA-----GAATTT-GCG-AAATGCT--G-CCTT---AAACG------CGACT-TTNA-A-ACCCCTGCAACATCAACTCGTTTGTAAGTAG-CCTGC--C-T-GT--TT-AAAA-NCTGA---TC-AT-ACGC---AGAA-CAAGC--TGCT-----T--------AATAAGTTGAGAGACATAAACACCATA----TA-GCAGGTGAT-GATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCGA----TTCG-TCATAAAGTCGAGTTG--TTAGTTTGCCGTTAATGTCTATGTTCAATGAAAT-A-CCAAGT-ACGAA-CAGACGTGGAAGACTTTGTGGCGT
finalCons : CAATTTAA-ACAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACG-AG--ACCC--TGG--ACCAC-------------------GAAG-CGGGATCAGGTGCCAAGGANGG-------------GTAAGCATCCCCTGTCGAC-CGGTCACAC-CCG--CCGTGAGCC-CAT--TGT-----CTNNNTC----A-GGTAAACGG---------AGTCANTCCGTAGTC---AAAATCA-GT-G-TATAAAA-AACGGCC--T-AACAA--TTNNTATGAAACACGTC--A---CAA---AGC-ATTT-GA-----C--C---AA-T-GGCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CGTAG-----AATTT-GCG-AAATGCTGGC--CTT---AAACG------CGACTN-TNA-A-ACCCCTGCAACATCAACTCGTTTGTAAGTAG-CCTGCCCGATT-------AAAANC-TGA---TC-AT-ACGC---AGAA-CAAGCTTTTATGCCG----------AATAAGTTGAGAGACATAAACACCATA----TA-GCAGGTGAT-GATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAG----------CCGA----TTCG-TCATAAAGTCGAGTTG--TTAGTTTGCCGTTAATGTCTATGTTCAATGAAAT-A-CCAAGT-ACGAA-CAGACGTGGAAGACTTTGTGGCGT
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TAAAAAACGAAGAAACAGTGGGTTCAACAACGTAATCCATAGCAAAAAAACAATAACAAAAAAATCCAGGTGGTAGAAGCAAACACGACTCGAACAAAGTCACAGAGACACATGCCATGAGAGAAGTATCCCTGCTGACTGGGGGCAACTCATCCGGAGAGCCTCTTTAGGCGAAATAAAGAAACAAGGACCTAGCAACGTAGGAGAAAATCTACAGGCACAAAGAGAGTAAACAAAGCATCAACAAGATAGACTGAGGAAAAGGTAACGCAACAAAAAGTAGACAACGGAAAGGCTAAAGTTGTTAGATGATTAATCGATAATGCTAGATAATCCTCTTGCAG
Unaligned ( gi|9 ): TTATACGAGATTTCGAGTAGTAGGATTATCAGGGGCTTCGACTTGCGTGATGGGTAGATGCCCATGGAGTATTTGTAGCCTTCTTCGCTGGGACGTTCTGGTCGCGACGCTGTGAGTCGTTAGTCCGGATATAATAATTGCAACGGGGTTAACCTATCTAGTAGTATAAATTGACATGGGGGTGGGCATAATAATAAAGTATGAAACAATAAGCCAATTTATTTTGACTTGTGATATATTTGTAATGGGGAAGTAAGGCTTAATCT
Unaligned ( gi|10 ): CAAGATATACAAAGTTGGTGTTGCAAACGCGAATCTCGCAAAAATGAGACAGGTGTCTGTGTCACGTGTAAATCCTTGCTGACGCAGTCAACCGCTACCCTTAGTGAAGTTAAGTAATCGGCCTAGTCGATCTATTATAAATGAGGTTGAACCTATGAGTTGAATGATTATTTTTCGCACAGGTCTTATAGCGTCGTGAATTGCGAAATCATGACATTTAAA
Unaligned ( gi|13 ): AAGGACGAAGTAACGATTTGTGTCAAACGTACCATCATTTAATCCAAAAAAAAAAAACTCATATTAGCAAATAAACTCATGGAAAGTGTAAGGAACACACTACGGACCCCTCCGACAAAATGCGATAGGTAGTATATCAGTAAAAGTGCCTAATGTAGGTAGCTAAACATCCCTGCTGA
Unaligned ( gi|16 ): CATAACAACAGGCGAAATTAACATTTGTCTCAAACGTAGTCATATCCAATAGCGATAGTACCACGATTCAAGGTGTAGGTTCATCAAGGATCCGTCATACAATAAGCGTA
Unaligned ( gi|17 ): TGTAAGTTTTCAATTCTTTCTTATATACAACATGTATTTGCATATGCATTCTAGTGTATTTTCGGTTTCTTGAAATATATTGATTGTCAAATGCAACAATGAAGACA
Unaligned ( gi|18 ): AACATTTGAGTCAAAGTAATATAATTCCAAAAAAAAAAAAACAAATTACCAAAATAGATGATAGGCAACCACGATCCCGACAAAGCGAAGGAGGATTAGGGCCATTA
Unaligned ( gi|20 ): ATAGTCCAAAAAACTAATATATCATATCATATGCGATGAGCTAGAGCATACCGAGAGCAACACGGACCTCTCACACAAAAAAGTCGAAGGTAGGATCAGTGT
Unaligned ( gi|24 ): ATGAACCATGATCAATTAGAATTTAACACAATATAAAAGTTAGACAAACGTGGACCCCTATATATACCAGAGGTGCTGAGAAGGAATAACCA
Unaligned ( gi|29 ): AACGTATTTTCCCACGATATTTATATATCCAAATATAACATACAAAAAGGCGAAGTTATCACTGTGTCAA
Unaligned ( gi|32 ): AGGATCGGTGCAATTGGAGGATAAATACATCCTCTGCTGATCCGGGTCATCATTGCGTGAGCCGTAG
Unaligned ( gi|36 ): TTGCAGTTAATATATATGTTTAATAAACTATCTAAGTACAAGGAAGTTGTGGAAAAC
Unaligned ( gi|38 ): GCAAAGTTAACATTGCATTAAACGTAATCATATAAAAAGTTGAGTGTATGGCA
Unaligned ( gi|39 ): TATCTCAATCAGGTAAACGGAGTAATCTGCAATCAAAATAAAGTATATTAA
Unaligned ( gi|40 ): CACAGAATAATTCGTAATCGAAATCAGTGTTTACAAAAAGACCTAGGAAA
Unaligned ( gi|42 ): CTTGATCAGGTAAATGTAGTTGTCCGTAGTCAAATAAATGATAAAAA
Unaligned ( gi|43 ): ATACATAACCAACTCATGCATATCGAATCAGTTGAGAGAGATGAA
Unaligned ( gi|49 ): ATACAAAAGGCGAAGTTAACATTGTGTCA
Unaligned ( gi|50 ): ATACAAAAGGCGAAGTTAACATTGTGTCA
Alignments
lowQualScore : 1 1 111 44444444444444444444444 111 111111 5555555555555555555555555555555555555555555555555555 11 111111 1111111 111111 444444444444444444444 44444444444444444 33333333 1 8888888888888888 111111 11 11 111 1 1
lowQualScore : 0 0 8 6 5 4 1 8 8 1 777 77 66 66 44444444444444444444444 66 6666 3 555555 111 44 3 44 5 0 5555 2 2 33 2 33 0 66 8888888 33 444 777777 3 888 2 2 2 2 2 2 5 444 5555555555555555555555555555555555555555555555555555 88 2 2 2 2 99 5 2 2 11 7 0 111111 66 4 1 4 1 444 66 4444444 1 44 000000 4 1 77 0 333333333333333333333 55 888 5 00000000000000000 1 1 1 44444444 0 8 5 8 3 0 0 3 9 2 4444444444444444 222222 33 2 7 11 777 3 3 7 6
lowQualScore : . . . . . . . . . . ... .. .. .. ....................... .. .... . ...... ... .. . .. . . .... . . .. . .. . .. ....... .. ... ...... . ... . . . . . . . ... .................................................... .. . . . . .. . . . .. . . ...... .. . . . . ... .. ....... . .. ...... . . .. . ..................... .. ... . ................. . . . ........ . . . . . . . . . . ................ ...... .. . . .. ... . . . .
lowQualScore : 6 6 0 7 7 0 4 9 9 4 777 99 99 99 99999999999999999999999 11 9999 6 666666 111 66 3 66 2 4 1111 9 7 77 5 99 1 33 2222222 77 666 888888 6 888 5 5 5 5 5 2 3 777 6666666666666666666666666666666666666666666666666666 88 4 4 5 7 00 7 9 9 55 3 2 111111 22 4 1 4 9 444 11 5555555 0 66 888888 7 2 88 9 999999999999999999999 44 888 0 22222222222222222 7 0 7 00000000 6 0 0 0 2 2 8 2 2 0 5555555555555555 222222 88 5 3 00 777 3 3 3 7
consensus : CAATTTAA-ACAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACG-AG--ACCC--TGG--A------------C----CA---CGAAG-CGGGATCAG---G-TGCCAA--GGANGGG--TA-AG--CATCCCCTGTCGAC-C--GGTCA-CAC-CCG--CCGT-GAGCC--CAT--TGTCTNNAT---CAGG--TAAA-C-GGAGT-----CANTCCGTAGTC---AAAAT-CAG-T-G-TATAAAA-AACGGCCTAACAA-TT-NNTATGAAACACGTC--A---CAA---AGC-ATTT-GA-----C--C---AA-T-GGCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CGTA-----GAATTT-GCG-AAATGCTGGCTTT--AAACG------CGACTNTT-A-A-A-CCCCTGCAACATCAACTCGTTTGT-AAGTAGCCTGCC-CGATT-AAAA-NCTGA---TCAT-ACGC---AGAA-CAAGCT---CT--T--ATGCCGAATAAGTTGAGAGACATAAACACCATA----TA-GCAGGTGAT-GATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAGCTGA-GCC------TTCG-TCATAAAGTCGAGTTG--TTAGTTTGCCGTTAATGTCTATGTTCAATGAAAT-A-CCAAGT-ACGAA-CAGACGTGGAAGACTTTGTGGCGT
Reference ( family-1200 ) : CAATTTAA-ACAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACG-AG--ACCC--TGG--A------------C----CA---CGAAG-CGGGATCAG---G-TGCCAA--GGANGGG--TA-AG--CATCCCCTGTCGAC-C--GGTCA-CAC-CCG--CCGT-GAGCC--CAT--TGTCTNNNT---CAGG--TAAA-C-GGAGT-----CANTCCGTAGTC---AAAAT-CAG-T-G-TATAAAA-AACGGCCTAACAA-TT-NNTATGAAACACGTC--A---CAA---AGC-ATTT-GA-----C--C---AA-T-GGCA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CGTA-----GAATTT-GCG-AAATGCTGGCCTT--AAACG------CGACTNTN-A-A-A-CCCCTGCAACATCAACTCGTTTGT-AAGTAGCCTGCC-CGATT-AAAA-NCTGA---TCAT-ACGC---AGAA-CAAGCT---TT--T--ATGCCGAATAAGTTGAGAGACATAAACACCATA----TA-GCAGGTGAT-GATGGAATGTTG-CTACATAAATATGGTAAGTTGACGATGGAGAAGCCGA----------TTCG-TCATAAAGTCGAGTTG--TTAGTTTGCCGTTAATGTCTATGTTCAATGAAAT-A-CCAAGT-ACGAA-CAGACGTGGAAGACTTTGTGGCGT
gi|1 : CAATCTAA-ACGGAA-TACCAGAGT-AA---------AA-ACA-AGGAACCT--TGG--ATACTAGTAATGAC----CA----GAGG-TGAGATCAG---G-TG--GA--TGATAGGAGTA-AG--CATCCCCTGTCGAC-C--GGTCA-CAGACCG--CCGT-GAATC--CTT--TATCTGAT-----AGG--TAAG-GAGGAGT-----TAATCCGTAGTC---AAAAT-CAGGT-G-TATAAAG-AACGAC-TAACAA-TG-AGTATAAAACACGTC--A---TAAGT-AGC-ATTT-GA-----CA-C---AA-A-GGTA-GG-TTGTAT--TGG-C-AAA-CT-AG--ATCG-T-TATA-AC-GAC-CATAACTTTGAATTTCGCG-AAATGACG----T--AAACG------TGACTGTT-GTG-A-CCCCTGTAACATCAATTTGTTTGT-CAGTAGCCTGTCACTATT-TCAA-AGTGA---TCAT-ACGC---AAGA-CAAGCT---CT--T--A------ATAAGTTGAGAAACATAAACACCATA-----A-GAGGGTGAT-AATGGGATGCTG-CTACTTAAATATGGGACGTTGACGCTGGAGAAGCTGAAATTAACCAATTTA-TCATGAATTTGAGTTG--TTGGTTTGCCGTTAATGTCTGTGTTCAATATAATAA-CTATGT-ACAAATCAGACGTGGAAGACTTTGTGGCGT
gi|11 : -CCG--CCATAGAGCTAGC-T--TATCTAGATA--CAAGACTACA-T-G-AGT-------ATC-GTAGTC---GAAAT-CAG-T-G-TTTACAA-AAAGACTGGAAAG-TTCGGTAT-AAACATG-C--G---CAACTCAGTGATTT-GAGTTCGC--C---AA-TGGGCA-GGTTTTTAT--TGGAC-AAA-CTAAA--ATCG-A-TATA-AC-t
gi|12 : cacagggggcaAC-AAAGTCAAGTGTAGGGCAACACG--G--ACCT--CCG--A------------C----AAAAGCGAAGGCAGGATCAG---G-TGCCAT--GGAGGAG--TA-AG--CATCCTCTGCTGAC-C--GGTCA-CAC-CCG--CCGT-GAGatttccacaaatt
gi|14 : ttgatacaaatataaataggcggagttatcaccgtgctaaaagtaatcataatccaataacatatgcatatatgc---AA-T-GA-A-GG-TTGTAC---GA-CAAAA-CC-AG--ATCG-T-TGTA-AC-A---CATA-----GAGATA-GCGAAAATGCTGA-TTC--AAACG------AGACTATG-A-A------CAGTAACATCAATTTTATTGTCCAGTAACTATCT-CGATT-
gi|15 : cacaaGT-CAGTAGC-TGCCACGAT--AAAA-CCTGA---TCATGACAC---AGAA-CAAGCTAATTT--T--GCACCGAATCAGTTGAGAG-TATAAACAACATACCGGTATGCAGGTAATCGATGGAATGTTG-t
gi|19 : TA-A-ATA-TCCTTATAACATACACTTGCTAGT-AAGTAGCCTAC----AT-----------A---TCAT----C---TGAT-CAA----------T--ATGC--------TCGAGAGACACCAACGCCATA----TA--CAGG
gi|2 : ttttcttgtattacaCAATTTAACACAGAAATAC-A-AAC-AAG-GT--GGAAA-ACA-CG--ACCCCCTGGGCA------------C----CA----GA----GGGAT-AGTATG-CACTAA--TGA------TACAG--CATCCC-TGTCGAC----GGTCA-CAC-CCG--CCGT----CC--CAT--TTTTTACACTGCCAGG--TAAAAC-GGTGT-----AACTCTG--GCA---AAAAT-CGA-T-GCTAGAAAA-AACTA--TAACAT-TG-CTTATGA--CACATC--A---ACA---ACC-ATTT--A-----C--C---AA----GCA-GG---GTAA--TTG-C-AAAACT-A-----CG-TCTATT-AC--AC-CATA-----GATTTT-ACG-AATTCTTAGTCTT--AA-CA------CGGCATTT-A-A-A-CCCCTGCAACAACAACTTGTTTGT-AAGTAGTC--CT-CTATTCAAAC-ACTGC---TCA--ACGC---AGAACCCAGCC---TTGCT--AT-TCGAATAAGT---GAGAAATACAC-CCATA----TA--CAGG-GAT-GAT-GAATATTGCCTACATAAA----GTAAGTTG-CG-TGGAGAAGCTGATGCC------TCCGTTCAT-------AGTTACTTTACTTTG-CATTCATGTCTATG-TCAA--AAAT-A-CCAAGTCACGAA-CAGACATGGAAG-CTCT-TGGTGTa
gi|21 : aaaccatggacaattctcgAATTCGTAGTC---AAAAT-CCA-T-A-TCTAACC-AGCGTCCGAACAA-TG-GGCATAGAACACGCC--cctttattctatgtgggttttttttaattcg
gi|22 : tTCAA---A-TGTCAA--GGAAGTG--TA-AG--TATTTTCTGTCGAA-A--GGTCA-CAC-CTG--ATGT-AAA-C--CATA-TATGTTAGG---CAGG--TAAA-C-ctatagtcgctaattaaccacaaacgtaactcgtagtaacaa
gi|23 : ggtataacacggatccctacg--CCAT-GAGCT--TAT--TGCCTTGAT---AAGG--TAAA-C-AAAG------CAATCCGTAGTC---AAA-T-CAG-T-G-TATGGAA-AACGGCTTAAC
gi|25 : ggctcacgtggggtgtgatCGT-GAGCC--CAT--TGTCTTCCC---AAGG--TAAA-T-GAAGTATCAGTATTCCGTAGTC---AAAAT-CAG-T-G-TATGAGA-AAAGTTTTAACAA-TT-CCTATGA
gi|26 : aTAGTC---GGAAT-TGG-T-G-CACGAAG-AACGGCCTATCGA-TT-TACATGAAACTCGT-----------------AT--------------------------------GTAT--TAG-C-AAC-CT-AG--ATAG-T-TATA-AC-AAC-CAT
gi|27 : GGATCAG---GGTGCCAA--AGA--GG--TA-AG--TAT-CCCTGTTGACAT--GTTCA-CAC-CCGTTCC-T-GAGCT--TTC--TATCTTCAT---CAGG--TA
gi|28 : ttAAAG-AGCGGTCTAAGAA-TT-GGTATGAAACACGTTTGA---CAG---AAT-AAAT--------C--C---AAGT-GGCA-CT-TTGCAC--TTG-C-AAA-
gi|3 : TTTAG-ACATAA-TAC-AAAAT-AAGAATTGGGCAA-ACACGG--GCAC--TTA--A------------A----TA---C--AT-CAG-ATCAG---G-TGCCAA--GGAAGAG--TA-AG--CATCCCCTATCGAG-A--CGTTA-CTC-CTG--CCGT-GAGCC--TAT--TGTTTTCAT---CAGG--TAAA-C-GGGG------CAGTCCATCGTC---AAAAG-TTG-T-G-TATAAAA-A--------------T-CTT-TTAAACAAATC--A---TAC---AGC-ATTTTAA-----C--C---A------C----------C--TGG-C-TAA-CT-AA--ATCA-C-TATT-AA-AAC-CATA-----GATTTT-ACG-AAATGCTGGCTTT--AAATT------TTACTGTT-A-A-AATTCCTCTAACA---ACTTGTTTGT-AAGTAGCCTGCT--------------------TCAT-GCAC---AGAA-CAAGCT---CTG-T--ATATCAAATAAGTTGAGAGACATGAACACCATA----T--GCAGG----------AATGTTA-CTACATAAATATGGTAAGTTGACGATGGAGAAGCCG-----------TTTG-CCATAAAGCCGATTTG--TCAGATTGCTGTTAATATATATGTTCAATGAAAT-ATCCAAGT-ACGAA-GCTACGTGAATGACTTTGTGGtccga
gi|30 : aacagtgatcaatgttgtaaatGTCTAGCAA-TT-GGTATGAAACACGCC--A---GAAC--ACC-ATAT-GAAAT--C--C---AA-A-AGCA-GG-TTGTAT--TGG-T-Aaatctgttatttctagtgtactgagatttttcgaatcg
gi|31 : agcATAA-TT-ATTATAAAACACGTC------C------GT-ATAT-G------CTGC---AA-T-GGAA-GG-TTGTAT--T-G-C-AAA-CT-AG--CTC--T-TATA-AC-
gi|32 : GGATC-G---G-TGC-AATTGGA-GGA--TA-AATACATCCTCTGCTGAT-CCGGGTCATCAT-T-G--C-GT-GAGCC--
gi|33 : aAAG-AACGGTCTGACAA-TT-AGTATGAAACAC-TT--A---C------------T-GA-------------------------TTGTAT--TTG-T-AAA-TT-AG--ATCgtag
gi|34 : -CGTA-----GATGTT-GCG-AACGGATGACTTTCTAAACGAGAGATCGGCCATT-A-A-A-CCCTTGCAACATCtgaatacaa
gi|35 : cagAT--TGTCTTGAT---CAAG--GAAA-T---AGC-----CAACCCATAGTC---AAAAT-CAG-T-G-TATAA
gi|37 : agtcttatat---AGC-ATTT-GA-----C--CT--AA-C-GGCA-GG-GCATACA-TGG----AA-CT-AA--ATCG-T-TATA-GC-GAC-CATA-----
gi|39 : --TATCTCAAT---CAGG--TAAA-C-GGAGT------AATCTGCAATC---AAAATAAAG-T-A-TATTAAa
gi|4 : CCC--TGG--A------------CATGGCA----AAAG-TGAGACAAG---G-TGCCTA--TGAAAAG--TA-AG--CATTCCCTGTCGAC-C--------CAT-GTG----GG-GAGTC--TATATTGTCTTGAT---CAGG--TAAA-C-GGAGT-----CA-TCCGTAGTC---AGAAT-AAG-T-G-CATAAAG-AGCGGCTTAACAA-TT-AATATGAAACA---------------------TTT-GAT----C--C---AC-T-GGCA-AG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TACA-AC-GAC-CATT-----GAAAAT-GCA-AAACGTTGACTTT--AAACG------TGAGTGTT-C-A-A-TTCTTGCAACATGGATTTGCATAT-CAGTAGTCTGCCTCGGTT-AAAACATTGGTCTTCAA-ATGCATGAGAA-CAAGCT---CT--TGCATATCGAATCAGTTGGGAGAGATAAATACCGCA----T--GCTGATGAT-GATGGCATATTG-CTACATAAATATATCCAGTTGACGATAGAGAAGCTGA------------AA-TCATAGAGTTGGGTTG--TTAGTTTACCGTTAGT
gi|40 : acA-C-AGAAT------AATTCGTAATC---GAAAT-CAG-T-G-TTTACAA-AAAGACCTAa
gi|41 : cCCCTGTCGAA-C--GGTCA-CAT-CCG--CCGT-AAGTC--CAT--TTTCTggaaa
gi|42 : atCTTGAT---CAGG--TAAA-T-GTAGT-----T-GTCCGTAGTC----AAAT-AAA-T-G--ATAAAA-Acacaccgcc
gi|44 : T-GA-----T--CT--AA-T-GGCA-GG-TTGTAT--TGA-C-AAA-CT-AA--AGCG-T-TATA-
gi|45 : AACC------CGACTATTTA-A-A-CCCCTGCAA---CAACTTGTTTGT-AA
gi|46 : CTCCGCCGAC-C--GGTCA-CAC-CCG--CCGT-GAG
gi|47 : GAGGAG--TA-AG--CA-CCTCTGCTGAC-C--GATCA-CAC-Ctgtgagt
gi|48 : CA-GG-TTGTAC--TGG-C-AAA-CT-AG--ATCG-T-TATA-
gi|5 : A-TAC-AAAATCGAGTGTAGGGCAACACG--G--ACCT--CCG--A------------C----AAAAGCGAAG-CAGGATCAG-----TGCCA---TGAGGAG--TA-AG--CATCCTCTGCTGAC-C--GGTCA-CAC-CCG---CGT-GAGCC--CTT--AGTCGAAAT---AAAG---AAA-C-GGGAT-----TAC-CCGTAGC-----AAAT-C---TAG-TAGGAAATGACAGTCTACAAA-GG-AATTTGAAACAAATC--AAGTCAA-----C-ATAT-GA-----C--TTGAAG-T-GACATAT-TTGTAA--TCG-C-AAA-CA-AGGCATC----TATAGAC--AC-CGTA-----GAA-TT-GCG-AAATGATGACTTT--AAACG------AGATTCTT-ATA-A-CCCTTGCAGCATCAA--CGTTTGT--AGTAGTTGGCCTCGCTT-AGAA-GCT
gi|6 : aatcgtatgtttcctacagattgatgtaattcatatcatacaaaaggcgaagttaacattgtgtcaaacgtaatcataatcccaaaactAAGTTCA-ATAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACA-AG--ACCC--TGG--A------------C----CA---CGAAG-TGGGATCA----G-TGCGTA--GGATAGG--TA-AG--TAT---CTGTCGAC-C--GGTCT-AAC-CCA--CTGG-GA-TC--CAC--TGTCTGTTT---CAGG--AAAA-G-GGAGT-----AATTCCGTAATCAGAAAAAT-CAG-T-G-TATAAAA-AACGGCTTAACAATTT-CTTACGAAGCACTTA--A---C-A---AGC-ATTT-GA-----C--C---AA-T---TA-A---TGTACAATGG-C-AAG-CT-AGA-ATCGCT-TACA-ACGGACGCGTA------AATTT-G-G-AAATACTGGCCTT--CAACG------TGATTTTG-A-G-A--GCCTGCAACAACAACACGTTTGC-AAGTAGCCTGCTGTGATTAAAAA-TCTTA---TTAT-ATGC---AAAA-CAAGC-----------ATGCTAAATAAGcttgcgtatcgaatcaattgggaga
gi|7 : aacagtgattgggtctgaaAAGTTCA-ATAGAA-TAC-AGAAT-AAGAGTTGGGCAA-ACA-AG--ACCC--TGG--A------------C----CA---CGAAG-TGGGATCA----G-TGCGTA--GGATAGG--TA-AG--TAT---CTGTCGAC-C--GGTCT-AAC-CCA--CTGG-GA-TC--CAC--TGTCTGTTT---CAGG--AAAA-G-GGAGT-----AATTCCGTAATCAGAAAAAT-CAG-T-G-TATAAAA-AACGGCTTAACAATTT-CTTACGAAGCACTTA--A---C-A---AGC-ATTT-GA-----C--C---AA-T---TA-A---TGTACAATGG-C-AAG-CT-AGA-ATCGCT-TACA-ACGGACGCGTA------AATTT-G-G-AAATACTGGCCTT--CAACG------TGATTTTG-A-G-A--GCCTGCAACAACAACACGTTTGC-AAGTAGCCTGCTGTGATTAAAAA-TCTTA---TTAT-ATGC---AAAA-CAAGC-----------ATGCTAAATAAGatat
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TAAAAAACGAAGAAACAGTGGGTTCAACAACGTAATCCATAGCAAAAAAACAATAACAAAAAAATCCAGGTGGTAGAAGCAAACACGACTCGAACAAAGTCACAGAGACACATGCCATGAGAGAAGTATCCCTGCTGACTGGGGGCAACTCATCCGGAGAGCCTCTTTAGGCGAAATAAAGAAACAAGGACCTAGCAACGTAGGAGAAAATCTACAGGCACAAAGAGAGTAAACAAAGCATCAACAAGATAGACTGAGGAAAAGGTAACGCAACAAAAAGTAGACAACGGAAAGGCTAAAGTTGTTAGATGATTAATCGATAATGCTAGATAATCCTCTTGCAG
Unaligned ( gi|9 ): TTATACGAGATTTCGAGTAGTAGGATTATCAGGGGCTTCGACTTGCGTGATGGGTAGATGCCCATGGAGTATTTGTAGCCTTCTTCGCTGGGACGTTCTGGTCGCGACGCTGTGAGTCGTTAGTCCGGATATAATAATTGCAACGGGGTTAACCTATCTAGTAGTATAAATTGACATGGGGGTGGGCATAATAATAAAGTATGAAACAATAAGCCAATTTATTTTGACTTGTGATATATTTGTAATGGGGAAGTAAGGCTTAATCT
Unaligned ( gi|10 ): CAAGATATACAAAGTTGGTGTTGCAAACGCGAATCTCGCAAAAATGAGACAGGTGTCTGTGTCACGTGTAAATCCTTGCTGACGCAGTCAACCGCTACCCTTAGTGAAGTTAAGTAATCGGCCTAGTCGATCTATTATAAATGAGGTTGAACCTATGAGTTGAATGATTATTTTTCGCACAGGTCTTATAGCGTCGTGAATTGCGAAATCATGACATTTAAA
Unaligned ( gi|13 ): AAGGACGAAGTAACGATTTGTGTCAAACGTACCATCATTTAATCCAAAAAAAAAAAACTCATATTAGCAAATAAACTCATGGAAAGTGTAAGGAACACACTACGGACCCCTCCGACAAAATGCGATAGGTAGTATATCAGTAAAAGTGCCTAATGTAGGTAGCTAAACATCCCTGCTGA
Unaligned ( gi|16 ): CATAACAACAGGCGAAATTAACATTTGTCTCAAACGTAGTCATATCCAATAGCGATAGTACCACGATTCAAGGTGTAGGTTCATCAAGGATCCGTCATACAATAAGCGTA
Unaligned ( gi|17 ): TGTAAGTTTTCAATTCTTTCTTATATACAACATGTATTTGCATATGCATTCTAGTGTATTTTCGGTTTCTTGAAATATATTGATTGTCAAATGCAACAATGAAGACA
Unaligned ( gi|18 ): AACATTTGAGTCAAAGTAATATAATTCCAAAAAAAAAAAAACAAATTACCAAAATAGATGATAGGCAACCACGATCCCGACAAAGCGAAGGAGGATTAGGGCCATTA
Unaligned ( gi|20 ): ATAGTCCAAAAAACTAATATATCATATCATATGCGATGAGCTAGAGCATACCGAGAGCAACACGGACCTCTCACACAAAAAAGTCGAAGGTAGGATCAGTGT
Unaligned ( gi|24 ): ATGAACCATGATCAATTAGAATTTAACACAATATAAAAGTTAGACAAACGTGGACCCCTATATATACCAGAGGTGCTGAGAAGGAATAACCA
Unaligned ( gi|29 ): AACGTATTTTCCCACGATATTTATATATCCAAATATAACATACAAAAAGGCGAAGTTATCACTGTGTCAA
Unaligned ( gi|36 ): TTGCAGTTAATATATATGTTTAATAAACTATCTAAGTACAAGGAAGTTGTGGAAAAC
Unaligned ( gi|38 ): GCAAAGTTAACATTGCATTAAACGTAATCATATAAAAAGTTGAGTGTATGGCA
Unaligned ( gi|43 ): ATACATAACCAACTCATGCATATCGAATCAGTTGAGAGAGATGAA
Unaligned ( gi|49 ): ATACAAAAGGCGAAGTTAACATTGTGTCA
Unaligned ( gi|50 ): ATACAAAAGGCGAAGTTAACATTGTGTCA