lowQualScore : 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111111111111111111111111111
lowQualScore : 1 1 111 55 44444 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 44444444444 22 1 1 1111 222222222 111 222222 2222222222 11 4444444444 111 000000000000000000000000000000 22222 11 1111 1 11 111 333333333333333333333333333333333333333333333333333 222222222222 11
lowQualScore : 5 5 888 55 33333 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 77777777777 77 5 0 8 4444 1 111111111 000 222222 5 1 6666666666 5 5 5 5 888 11 66 0000000000 5 5 222 5 6 5 777777777777777777777777777777 88888 5 5 888 11 5 5 7777 0000 0 5 5 22 77 111 6 8 0 8 6 5 66 3 6 4 777 4 4 8888 66 66 66 777777777777777777777777777777777777777777777777777 66 4 777777777777 44 66 4 4 11
lowQualScore : . . ... .. ..... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . ........... .. . . . .... . ......... ... ...... . . .......... . . . . ... .. .. .......... . . ... . . . .............................. ..... . . ... .. . . .... .... . . . .. .. ... . . . . . . .. . . . ... . . .... .. .. .. ................................................... .. . ............ .. .. . . ..
lowQualScore : 0 0 000 00 00000 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 55555555555 55 5 0 0 8888 0 888888888 000 111111 7 7 0000000000 7 0 0 0 888 99 99 1111111111 0 0 444 0 9 0 111111111111111111111111111111 22222 0 0 888 99 0 0 0000 6666 0 7 7 00 99 777 7 0 8 0 7 7 99 2 2 4 888 4 4 7777 11 11 11 333333333333333333333333333333333333333333333333333 11 4 111111111111 77 11 4 4 00
consensus : NNATTAGCCACTAATATTACTATT-ATAGTGACAAAATGA--AGTTTTAAATTGAC-TCACATGAGACTAG-TGA-GTCAAGA-TTTCAAGCAGAGATTAAGGCAATTAACTCTAATCAATTAT-TAAGGGACT-GGACCAGATTTCCTNAGTCCACATGGANANTGGGGGTGGGGGGGGGGGGGGGAGGGGGGGGGGC-----------TA--A--GACTA----CGGCT-GACATAATTTACTG-CACTGGCCAGCCCACAGAGAACTTTGTNGCATTCTNTATCNTATA-GATAATNTCTNTGTCTTATAAAAGCGAATGTATATCNAACNTCACTTAACTGTAAACCATAGAATNCCGTATNGGCGTATC-----TAAGTGC----TGTT--TTG--A-AAACGATGTAGTACCGGGGTCCTANCACTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTCCTAAAAT-ATAATTTTTTCAACG-------TGTTAGTAAGAGCACTTCAGACTCCGAATAAAT-AAA-ACT--T-TCATATAA--AA--ATAAA---AAA------GT-TGTTA---C----N-CAT-TTATAGTCAT-TA-TAA-ATAC---T--A--CCA--TGT-CCTA-TGCT-TTCA--A-TATTTATCCTNG-ATTT-T------AT--A-ATGTGTAC--A-----ATATAT----A-A-TTC---TTGCAT--GG-C-AAAA-A-TA----C-AGAAAT-A-T-TTT--ACCN--AAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-CTG-A--TT--TGGATATT--GA--AT--------C-TCGAA---TCTTGGATTTCGAATNTTG-AATTTCGAATAT-TTTGGA--TTTT-GAATTTAG-AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
Reference ( gi|2 ) : CCATGAGACACTGGCAT--CTATTTATGTTGACAAA-TGACCAATTTTATTCTGACATC-CATG-GACTAGGTGATGTCCAGACTTTCAAG-AGTGAAT--GG-ACTTAACT-TA------TATATAAGGGACTTGGACCAGTTTT--TAAGTC-ACATGGGAACTGGGGG--------GAAAAAGAAGGGGGGGGGGTATGTACATTTGTACCATTGACTAAAATCGGCTTGACATTATTCACTGCCACTGGCCAGCTCACAGAGAA-TTTGTAATATT-TCTATCA-ATAAGATA--CTCTGTGT-TT-TAAAGG-AAATATATATCTAACT-AACTT-ACTGTAAA-CAT----TA--G-GTTGGTGTACC-----TAAGTGC----TGTT--TTG--ATAAACGATGTCGTATCGGA--CCTAATATTGACATAATATTGTGTTT----------------------TCAATTTTGC---AATGACAATT-----GACGTCGTGATTGTTATTA----CACT---GAC--CGAATAAAT-AAA-ACT--T-TCATATAA--AA--ATTAA---AAA------GT-TGTTA---C----T-TAT-TTATAGTCAT-TA-TAA-ATAC---T--A--CGG--TGT-C-TA-TGCT-TTCA--A-TGTTTATCCTAG-ATTT-T------ATTAAAATGTGTA---A-----ATATAT----A-A-TTC---TTGCAT--GA-C-AAAA-A-TA----C-AGAAAT-A-T-CTT--ACCC--AAAG-AAA-AATGTA-TTTATTTTACAGAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-CTG-A--TT--TGGATATT--GA--AT--------C-TTGAA---TCTTGGATTTCAAATATTG-AATTTCGAATAT-TTTGGA--TTTT-GAATTTAG-AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGA-CTTTCG
gi|1 : ATTAGCCACTAATATTACTATT-ATAGTGACAAAATGA--AGTTTTAAATTGAC-TCACATGAGACTAG-TGA-GTCAAGA-TTTCAAGCAGAGATTAAGGCAATTAACTCTAATCAATTAT-TAAGGGACT-GGACCAGATTTCCTTAGTCCACATGGATAATGGGG---------GAAAAAGAAGGGGGGGG
gi|7 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataAAGTC-ACATG--AACTGGGGGTGGGGGGGGGGGGGGGAGGGGGGGGGGC-----------TA--A--GACTA----CGGCT-GACATAATTTACTG------GC-AGCCCACA----------TAGTATTCTATATCC-ATA-GATAATCTTTTTGT-TTATA---G-AAAT-TATATCGAACTTCATTT-ACTGTAAA-CATAAA-TACCGTATGGGCGTATCTACTGTAAGGGC----TGTT--TTA--A-AAACGATATAGTACCcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctaacacttcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|1 : CACTGGCCAGC-CACAGAGAACTTTGTTACATT-TCT-TCATAT---ATA--ATCTATGTCTT-TAAAAGCGAATG-ATATCTAACA-TACTTAACTGTAAACCATAGAATC--G-ATTGGCATATCG----TAAGTGCACTTTGTTTCTTGCCCTAAACGATGTAGAACAGGGGTCCTAACACTcagtggcggatttagaggg
gi|6 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaaggggggggC-----TAAGTGC----TGTT--TTG--AATAACGATGTAGTACCAGA--CCTATTATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTCCTAAAAT-ATAATTTTTTCAACG-------TGTTAGTAAGAGTACT---GAC--CGAATATTT-AAACACT--T-TCATATAA--AT--ATAAA---AAAT-----GT-TGTTA---C----T-TAT-TTATAGTCAT-TA-TAA-ATAC---T--A--CCA--TGTCC-TA-TACT-TCCA--A-TGTTTATCCTAG-ATTT-T------ATATATATGTGTAT--T-----ATATA-----A-A-TTT---TTGCAT--GA-C-AAAA-A-TA----C-AGAAAT-A-T-CTT--ACCC--CAAG-AAA-AATGTA-TTtcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|1 : tA----CACTTCAGACTCCGA-TAAAT-ATA-AAT--G-TCA-ATAATTAACTACTAACACAAACAACCCGT-TGTTAACTT----T-TATCTTATAG-CAT-TAATAATATTC---TTTATTCGG------C-TA-TGCT-TTCA--AATATTTATCCTAGTACTT-TTTCCATACTATCATATGTACTGACTTC-ATATATTAGAA-A-TTCATTTTACAT--GAAC-AAAACA-TA----C-AGAAAT-A-T-CCTTAACCC--AAAG-AAga
gi|8 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaaggggggggcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctaAAATGAAA-ACTGTTGTTATATTA--A-----TGA---AAA------TTGTGTTA---CACATT-TAT-ATATAGTCAA-TA-TAA-ATAT---T--A--CCA--TTT-CCTA-TGCT-TTCA--A-AGTTTACCCTAG-ATTT-G------AT--------------------ACATA-----A-A-TTC---TTGCGT--GG-C-AAAA-G-TA----C-AGAA
gi|3 : acatgcgcgtggatttatttacgtaccccatcaacggaaacttcgatataa-AAA-ACT--T-CAATATAA--AA--ATATA---AAA------GT-TGTTA---C----AACAT-TTAAAGTCAT-TA-TAA-ATAC---T--A--CCA--TGT-CCTA-TACT-TTCT--A-TATTTATCTTTG-ACTT-G------ATATAAATGTGTATT-A-----TTATAA----A-A-TTC---TTGCAT--GG-T-AAAA-A-AA----CCAGAAAT-A-TATTT--ACCG--AAAG-TAA-A-TGTA-TTTATTTTACATAATCAGttttttttttttacagaaagataa
gi|5 : AA-ACT--T-CAATATAA--AT--ATAAA---AAA------GT-TGT-A---C----A-CAT-TTAAAGTCAT--A-TAA-ATAC---T--A--CCA--TGC-CCTA-TGCT-CTC-----TATTTATCTTTG-ATTTGT------AT---AATATG-A---A-----TTATAT----A-AATTC---TTGCAT--GG-T-TAAA-A--A----C-AGAAAT-A-T--TT--ACCG--AAAG-TAA-AATGTA-TTTATTTTACAGAATCAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacttttgaagtatgaattcttgattttgattggctgattgggtattgaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaatgagccttctgggctttc
gi|4 : CATATTG--AA--AT-AA---AAA------AT-TGTTA---C----A-CAT-TTATAGTCAT-TA-T----TGCATTT--A--CGAACTGTCC-TATTGCCGTTCG--A-TGTTTATCCTTG-ATTT------------------------A-----ATATATA---A-A-TTC---GTGCATG-GG-C-AAAA-GTTA----C-AGAAAT-ATT-TTT--ACCG--AAAG-AAATGATGTACTTTATTTTTCATAATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaactttgaagttaatgattcttcatttgattggctgatttggatattgaatcacaaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaaagagccttctgggctttc
gi|10 : AA---AAT------GT-TGTAA---C----A-CAT-TTTTAGTAAA-TA-TAG-ATAC---T--A--CCA--TCT-CCTT-TGAT-TTCA--A-AATTTACCATAG-ATTT-G------ATATAAATGTGTAC--C-----ATATA-----A-A-ATC---TTGGAT--AA-C-AAAT-G-TA----CAAAAAAT-A-T-TTT--tgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcttgaagtatgaattctgattttgatttggctgatttctggatattgaatcacgaatcttgattttgaatcttgaatttcgaattttggattttggaattagaatgtcgatatgagcctttcagggctttcg
gi|9 : TCATATA-TAA-TCAC---TC-A--CA---TGT-CCTA-TGCT-TTCTTTA-TATTTATCTT----TTT-TGT----ATTGA---GTATA---ATCGTAATATAT----AGA-TTC---TTGCATGAGA-CAAAAA-A-TACAACC-AGAAATAA-T-TTT--ACCCGGAAAGTAAA-AATGTA-TTtactgatattctacataatc
gi|15 : ttaaactcaacaacttcaaatataaaagacataggtaaaataattcagtacacagttcagtttcaAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-TTG-A--TT--TGTATAAT--GA--AT--------C-TGGAA---TTTTGGATTTCGAATATTG-AATTT--A--------GGA--TCAT-GAATTT----A-GAA--TGTCGA-ATGAGAG-CC-TTCTGGG-CTTTC
gi|4 : ggaAATCTTGAAGT--ATGAATTC-TGA-TTTTG---ATTTGG-CTG-A--TTTCTGGATATT--GA--AT--------C-ACGAA---TCTT-GATTTTGAATCTTG-AATTTCGA--AT-TTTGGA--TTTTGGAATT-----A-GAA--TGTCGATAT--GAG-CCTTTCAGGG-CTTTCG
gi|11 : catattgaaataaaaaattgttacacatttatagtcattattgcatttacgaactgtcctattgccgttcgatgtttatccttgatttaatatataaattcgtgcatgggcaaaagttacagaaatatttttaccgaaagaaatgatgtactttatttttcataatctgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAT-TTGAAGT--ATTA--TTTTGA-TTTTT---G-TTGGTCTG----TT--TTGATATT--GATTAT----------TTGAT---TCT--GATTTCG-----------TCC--ATATCTTTGGATTTTTT-GAATTTAGTAATGGA--T-TCG--AT--GAGTCC-TTCTGGGTCTTTCG
gi|3 : attaactacaggT-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-CTG-A---T--TGGGTATT--GA--AT--------C-----A---CNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN-NNNNNN--NNNN-NNNNNNNN-NN-NNN--NGTCGA-AT--GAG-CC-TTCTGGG-CTTTCt
gi|5 : aaaacttcaatataaaaatataaaagttgttacaacatttaaagtcattataaatactaccatgtcctatactttctatatttatctttgacttgatataaatgtgtattattataaaattcttgcatggtaaaaaaaccagaaatatatttaccgaaagtaaatgtatttattttacataatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaactT-TTGAAGTTAATGA-TTCTTCA-TTT-G---A-TTGG-CTG-A--TT--TGGATATT--GA--AT--------C-ACAAA---TC----NNNNNNNNNNNNN-NNNNNNNNNNNN-NNNNNN--NNNN-NNNNNNNN-NN-NNN--NGTCGA-AA--GAG-CC-TTCTGGG-CTTTC
gi|13 : aaacttcaatataaatataaaaaagttgtacacatttaaagtcatataaatactaccatgccctatgctctctatttatctttgatttgtataatatgaattatataaattcttgcatggttaaaaacagaaatatttaccgaaagtaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacT-TTGAAGT--ATAAATC--TGA-TTTTGGTGA-TTGG-CTG-A--TT--TGATTATTTTGA--AT--------CACGGAA---TCTTGAATT--GAATCTTGGAATTTCGAAT-T-TTTGGA--TTTT-GAATTTAG-AA-T----TGTCGA-AT--GAG-CC-TTCTGGG-CT
gi|12 : tT-TTGAAGT--ATGAATTC-TGATTTTTG---C-TTGG-CTGTATTTT--TGGATA-T--GA--ATTAACATACT-TTGAAATTTCTTGGAGTCGAAATGTTG--ATTTCGAA----TTTGG------T-G-ATT----AA-GAACTTGTCGA-AT--GAG--C-TTCTG
gi|14 : tGAAGT--ATGAATCCTTTA-TTTTG---A-TTGG-TTG-G--TT--TAGATATT--GA--cgg
gi|16 : atacA-TTCTG---A-TTGG-TTG-A--TT--CAGATATT--GA--AT--------C-TTGAA----ATTG---NNNNNNNNNNN-NNNNNNNNNNNN-NNNNNN--NNNN-NNNNNNNN-NN-NNN--NNNNNN-NN--GAG-CC-TTCTGGG-CTTTCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccttatggacttt
gi|18 : TTTCGAAT---TTTGGA--TTTT-GAATTTAG-AA--------------T--GAG-CC-TTCTGGG-CTTTCGt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TGTTACACTTTTAAAGTCAATTATAAATAGGTTGGAGCCATGTCCTATACTTTCTCTATCTTTTTATTTTTGAGGT
Alignments
lowQualScore : 111111111111111111
lowQualScore : 11 2 1 22 2 1 1 2 2 2 1 11 1 1 333333 2 2 11 2 111 33333333 222222222222222222 4444 2 22 111111 2 222 222 1 222222222 11 222 11 444444444 33333 2222 11 22222 333 7777777777777777777777 222 2 22222 6666666 2222 3333333 11 11 2222222222222222 1111 111 5555555555555555555555555555555555 22222 11 1111 11111 11 33333333333333333333333333 22222 111111111111
lowQualScore : 3 2 88 0 2 5 77 88 0 5 5 0 0 3 0 5 4 4 88 5 3 5 000000 0 0 4 77 1 3 111 1 66666666 333333333333333333 2222 0 4 00 6 6 777777 222 3 1 7 111 7 6 000 1 2 444444444 99 1 000 44 6 666666666 1 55555 1111 33 88888 111 11 0 4444444444444444444444 2 111 0 77777 5555555 2 0000 6666666 33 33 8 5 5 2 66 66 7777777777777777 4 3333 777 55 4 0 8888 55 4 4 777 4 4 55 777 777 55 55 4 4 777 6 4 8888888888888888888888888888888888 9999 99999 777 777 00 4 4 444 3333 4 11111 4 8 00 777 66 5 5 0 5 66 1 4 4 777 4 4 6666 55 55 55 88888888888888888888888888 333 22 2 66 0 11111 55 4 777777777777 4 55 4 4 4
lowQualScore : . . .. . . . .. .. . . . . . . . . . . .. . . . ...... . . . .. . . ... . ........ .................. .... . . .. . . ...... ... . . . ... . . ... . . ......... .. . ... .. . ......... . ..... .... .. ..... ... .. . ...................... . ... . ..... ....... . .... ....... .. .. . . . . .. .. ................ . .... ... .. . . .... .. . . ... . . .. ... ... .. .. . . ... . . .................................. .... ..... ... ... .. . . ... .... . ..... . . .. ... .. . . . . .. . . . ... . . .... .. .. .. .......................... ... .. . .. . ..... .. . ............ . .. . . .
lowQualScore : 0 5 55 0 5 5 55 00 0 5 5 0 0 0 0 0 0 0 55 0 0 0 000000 0 0 0 55 0 3 777 0 33333333 000000000000000000 5555 0 0 00 7 7 000000 333 3 0 3 777 3 7 333 0 0 777777777 33 0 000 77 7 333333333 0 00000 2222 88 55555 000 77 7 5555555555555555555555 5 555 0 00000 0000000 5 7777 3333333 22 88 0 7 7 3 99 99 2222222222222222 4 3333 000 00 0 3 5555 55 0 0 000 0 0 55 000 000 55 55 0 0 000 3 0 4444444444444444444444444444444444 4444 66666 888 888 66 4 4 999 9999 4 11111 4 9 66 111 44 0 7 6 0 11 9 6 0 000 0 0 9999 55 55 55 22222222222222222222222222 999 44 6 99 8 33333 55 0 000000000000 0 55 0 0 4
consensus : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGTC-ACATGGGAACTGGGGG-GGGGGGGGGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCA-TATAGATAATCTCTNTGTCTTATAGAAG-GAATGTATATCTAAC-T-ACTTAACTGTAAACCATAGAAT--CG-ATTGGCGTATC-----TAAGTGC----TGTT--TTGAC--A-AACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA--AA--------A-------TAAAA-AA---GTTGTTA---CA-CAT-TTATA----GT--CA-TT-ATA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AATGTTTATCCTAG-ATTT--T----AT---A-----ATGTGTA-T--A----AT----ATAT----A---ATTC---TTGCAT--G-GC-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-CTG-A--TT--TGGATATT--GA--A-------T--------CNCG-AA---TCTTGGATTTCGAATNTTG-AATTTCGAATAT-TTTGGA--TTTT-GAATTTAG-AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
Reference ( family-120 ) : NNATTAGCCACTAATATTACTATT-ATAGTGACAAAATGA--AGTTTTAAATTGAC-TCACATGAGACTAG-TGA-GTCAAGA-TTTCAAGCAGAGATTAAGGCAATTAACTCTAATCAATTAT-TAAGGGACT-GGACCAGATTTCCTNAGTCCACATGGANANTGGGGGTGGGGGGGGGGGGGGGAGGGGGGGGGGC-----------TA--A--GACTA----CGGCT-GACATAATTTACTGC-ACTGGCCAGCCCACAGAGAACTTTGTNGCATTCTNTATCN-TATAGATAATNTCTNTGTCTTATAAAAGCGAATGTATATCNAACNTCACTTAACTGTAAACCATAGAATNCCGTATNGGCGTATC-----TAAGTGC----TGTT--TTGA---A-AACGATGTAGTACCGGGGTCCTANCACTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTCCTAAAAT-ATAATTTTTTCAACG-------TGTTAGTAAGAGCACTTCAGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA--AA--------A-------TAAAA-AA---GTTGTTA---CN-CAT-TTATA----GT--CA-TT-ATA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AATATTTATCCTNG-ATTT--T----AT---A-----ATGTGTA-C--A----AT----ATAT----A---ATTC---TTGCAT--G-GC-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--NAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-CTG-A--TT--TGGATATT--GA--A-------T--------CTCG-AA---TCTTGGATTTCGAATNTTG-AATTTCGAATAT-TTTGGA--TTTT-GAATTTAG-AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
gi|1 : ATTAGCCACTAATATTACTATT-ATAGTGACAAAATGA--AGTTTTAAATTGAC-TCACATGAGACTAG-TGA-GTCAAGA-TTTCAAGCAGAGATTAAGGCAATTAACTCTAATCAATTAT-TAAGGGACT-GGACCAGATTTCCTTAGTCCACATGGATAATGGGGGAAAAAGAAGGGGGGGG
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataGC-ACTGGCCAGCC-ACAGAGAACTTTGTTACATT-TCT-TCA-TATA--TAAT--CTATGTCTT-TAAAAGCGAATG-ATATCTAACAT-ACTTAACTGTAAACCATAGAAT--CG-ATTGGCATATCG----TAAGTGCACTTTGTTTCTTGCCCTA-AACGATGTAGAACAGGGGTCCTAACACTcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctaacacttcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaagggggggAACACTTCAGACTCCG--ATAAA--T-ATA-AAT-GTCA---ATAATTAACTACTAACA-------CAAAC-AACCCGTTGTTAACTTT-TATCTTATA----G---CA-TTAATA---ATAT-T--C---T----TTA--T-TCGGCTA-TGCT-TTCA-AATATTTATCCTAGTACTT--TTTCCAT---ACTATCATATGTA-CTGACTTCAT----ATATTAGAA---ATTCATTTTACAT--GAAC-AAAACA-TA----C-AGAA-----AT-A-TCCTTAACC--CAAAG-AAtcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|10 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaaggggggggcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctAAA-AT---GTTGTAA---CA-CAT-TTTTA----GT--AA-AT-ATA---G-AT-A--C---TA---CCA--TCTC--CTT-TGAT-TTC--AAAATTTACCATAG-ATTTGAT----ATA--A-----ATGTGTA-C--C----AT----ATA-----A---AATC---TTGGAT--A-AC-AAAT-G-TA----CAAAAA-----AT-ATT--TTTACT--GA-----------------TATTCTACATAATC
gi|11 : AT-TTGAAGT--ATTA--TTTTGA-TTTTT---G-TTGGTCTG----TT--TTGATATT--GATTA-------T---------TTG-AT---TCT--GATTTCG-----------TCC--ATATCTTTGGATTTTTT-GAATTTAGTAATGGA--T-TCG--AT--GAGTCC-TTCTGGGTCTTTCG
gi|12 : attaactacaggT-TTGAAGT--ATGAATTC-TGATTTTTG---C-TTGG-CTGTATTTT--TGGATA-T--GA--A-------TTAACATACTTTG-AAATTTCTTGGAGTCGAAATGTTG--ATTTCGAA----TTTGG------T-G-ATT----AA-GAACTTGTCGA-AT--GAG--C-TTCTGt
gi|13 : tT-TTGAAGT--ATAAATC--TGA-TTTTGGTGA-TTGG-CTG-A--TT--TGATTATTTTGA--A-------T--------CACGGAA---TCTTGAATT--GAATCTTGGAATTTCGAAT-T-TTTGGA--TTTT-GAATTTAG-AA-T----TGTCGA-AT--GAG-CC-TTCTGGG-CTcgg
gi|14 : tGAAGT--ATGAATCCTTTA-TTTTG---A-TTGG-TTG-G--TT--TAGATATT--GA--
gi|15 : atacAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-TTG-A--TT--TGTATAAT--GA--A-------T--------CTGG-AA---TTTTGGATTTCGAATATTG-AATTT--A--------GGA--TCAT-GAATTT----A-GAA--TGTCGA-ATGAGAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccttatggacttt
gi|16 : ggaA-TTCTG---A-TTGG-TTG-A--TT--CAGATATT--GA--A-------T--------CTTG-AA----ATTG---NNNNNNNNNNN-NNNNNNNNNNNN-NNNNNN--NNNN-NNNNNNNN-NN-NNN--NNNNNN-NN--GAG-CC-TTCTGGG-CTTTCG
gi|17 : TGTTA---CA-CTT-TTAAA----GT--CAATT-ATA---A-AT-AGGT---TGGAGCCA--TGTC--CTA-TACT-TTC------TCTATCT-----TTT--T----AT---t
gi|18 : TTTCGAAT---TTTGGA--TTTT-GAATTTAG-AA--------------T--GAG-CC-TTCTGGG-CTTTCGttttgaggt
gi|2 : ATGAGACACTGGCAT--CTATTTATGTTGACAAA-TGACCAATTTTATTCTGACATC-CATG-GACTAGGTGATGTCCAGACTTTCAAG-AGTGAAT--GG-ACTTAACT-TA------TATATAAGGGACTTGGACCAGTTTT--TAAGTC-ACATGGGAACTGGGGG--------GAAAAAGAAGGGGGGGGGGTATGTACATTTGTACCATTGACTAAAATCGGCTTGACATTATTCACTGCCACTGGCCAGCTCACAGAGAA-TTTGTAATATT-TCTATCAATA-AGATA--CTCTGTGTTTTA---AAGGAAATATATATCTAAC-TAACTTA-CTGTAAACATTAGG--------TTGGTGTACC-----TAAGTGC----TGTT--TTGAT--A-AACGATGTCGTATCGGA--CCTAATATTGACATAATATTGTGTTT----------------------TCAATTTTGC---AATGACAATT-----GACGTCGTGATTGTTATTA----CACT---GA--CCGA-ATAAA--T-AAA-ACT-TTCA--TATAA--AA--------A-------TTAAA-AA---GTTGTTA---CT-TAT-TTATA----GT--CA-TT-ATA---A-AT-A--C---TA---CGG--TGT---CTA-TGCT-TTC--AATGTTTATCCTAG-ATTT--T----ATTAAA-----ATGTGTA----A----AT----ATAT----A---ATTC---TTGCAT--G-AC-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CAAAG-AAA-AATGTA-TTTATTTTACAGAATCAG
gi|2 : ccAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-CTG-A--TT--TGGATATT--GA--ATCTTGAA-------------------TCTTGGATTTCAAATATTG-AATTTCGAATAT-TTTGGA--TTTT-GAATTTAG-AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGA-CTTTCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttgaagtatgaattcttgattttgattggctgatttggatattgaatcttgaatcttggatttcaaatattgaatttcgaatattttggattttgaatttagaagaatgtcgaatgagccttctggactttcg
gi|3 : ccatgagacactggcatctatttatgttgacaaatgaccaattttattctgacatccatggactaggtgatgtccagactttcaagagtgaatggacttaacttatatataagggacttggaccagtttttaagtcacatgggaactggggggaaaaagaaggggggggggtatgtacatttgtaccattgactaaaatcggcttgacattattcactgccactggccagctcacagagaatttgtaatatttctatcaataagatactctgtgttttaaaggaaatatatatctaactaacttactgtaaacattaggttggtgtacctaagtgctgttttgataaacgatgtcgtatcggacctaatattgacataatattgtgttttcaattttgcaatgacaattgacgtcgtgattgttattacactgaccgaataaataaaactttcatataaaaattaaaaagttgttacttatttatagtcattataaatactacggtgtctatgctttcaatgtttatcctagattttattaaaatgtgtaaatatataattcttgcatgacaaaaatacagaaatatcttacccaaagaaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAA-ACT-TCAA--TATAA--AA--------A-------TATAA-AA---GTTGTTA---CAACAT-TTAAA----GT--CA-TT-ATA---A-AT-A--C---TA---CCA--TGTC--CTA-TACT-TTC--TATATTTATCTTTG-ACTTGAT----ATA--A-----ATGTGTATT--A----TT----ATAA----A---ATTC---TTGCAT--G-GT-AAAA-A-AAC---C-AGAA-----AT-A-TA-TTTACC--GAAAG--TA-AATGTA-TTTATTTTACATAATCAG
gi|3 : T-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-CTG-A---T--TGGGTATT--GA--A-------T--------C-----A---CNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN-NNNNNN--NNNN-NNNNNNNN-NN-NNN--NGTCGA-AT--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacttttgaagtatgaattcttgattttgattggctgattgggtattgaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaatgagccttctgggctttc
gi|4 : aaaacttcaatataaaaatataaaagttgttacaacatttaaagtcattataaatactaccatgtcctatactttctatatttatctttgacttgatataaatgtgtattattataaaattcttgcatggtaaaaaaaccagaaatatatttaccgaaagtaaatgtatttattttacataatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaactCA--TATTG--AA--------A-------TAAAA-AA----TTGTTA---CA-CAT-TTATA----GT--CA-TT-AT-------T-G--CATTTA---CGAACTGTC--CTATTGCCGTTC--GATGTTTATCCTTG-ATTT-----------------------------A----AT----ATATA---A---ATTC---GTGCATG-G-GC-AAAA-GTTA----C-AGAA-----AT-ATT--TTTACC--GAAAG-AAATGATGTACTTTATTTTTCATAATC
gi|4 : AATCTTGAAGT--ATGAATTC-TGA-TTTTG---ATTTGG-CTG-A--TTTCTGGATATT--GA--A-------T--------CACG-AA---TCTT-GATTTTGAATCTTG-AATTTCGA--AT-TTTGGA--TTTTGGAATT-----A-GAA--TGTCGATAT--GAG-CCTTTCAGGG-CTTTCGtgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcttgaagtatgaattctgattttgatttggctgatttctggatattgaatcacgaatcttgattttgaatcttgaatttcgaattttggattttggaattagaatgtcgatatgagcctttcagggctttcg
gi|5 : catattgaaataaaaaattgttacacatttatagtcattattgcatttacgaactgtcctattgccgttcgatgtttatccttgatttaatatataaattcgtgcatgggcaaaagttacagaaatatttttaccgaaagaaatgatgtactttatttttcataatctgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAA-ACT-TCAA--TATAA--AT--------A-------TAAAA-AA---GTTGT-A---CA-CAT-TTAAA----GT--CA-T--ATA---A-AT-A--C---TA---CCA--TGCC--CTA-TGCT-CTC----TATTTATCTTTG-ATTTG-T----AT---A-----ATATGAA-T--T----AT----ATA-----A---ATTC---TTGCAT--G-GT-TAAA-A--A----C-AGAA-----AT-A-T--TT-ACC--GAAAG-TAA-AATGTA-TTTATTTTACAGAATCAG
gi|5 : T-TTGAAGTTAATGA-TTCTTCA-TTT-G---A-TTGG-CTG-A--TT--TGGATATT--GA--A-------T--------CACA-AA---TC----NNNNNNNNNNNNN-NNNNNNNNNNNN-NNNNNN--NNNN-NNNNNNNN-NN-NNN--NGTCGA-AA--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaactttgaagttaatgattcttcatttgattggctgatttggatattgaatcacaaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaaagagccttctgggctttc
gi|6 : aaacttcaatataaatataaaaaagttgtacacatttaaagtcatataaatactaccatgccctatgctctctatttatctttgatttgtataatatgaattatataaattcttgcatggttaaaaacagaaatatttaccgaaagtaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacTC-----TAAGTGC----TGTT--TTGA---ATAACGATGTAGTACCAGA--CCTATTATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTCCTAAAAT-ATAATTTTTTCAACG-------TGTTAGTAAGAGTACT---GA--CCGA-ATATT--T-AAACACT-TTCA--TATAA--AT--------A-------TAAAA-AAT--GTTGTTA---CT-TAT-TTATA----GT--CA-TT-ATA---A-AT-A--C---TA---CCA--TGTC--CTA-TACT-TCC--AATGTTTATCCTAG-ATTT--T----AT---ATAT--ATGTGTA-T--T----AT----ATA-----A---ATTT---TTGCAT--G-AC-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CCAAG-AAA-AATGTA-TT
gi|7 : AGTC-ACATG--AACTGGGGGTGGGGGGGGGGGGGGGAGGGGGGGGGGC-----------TA--A--GACTA----CGGCT-GACATAATTTACTG-----G--CAGCCCACA----------TAGTATTCTATATCC--ATAGATAATCTTTTTGT-TTATAGA----AAT-TATATCGAACTTCATTT-ACTGTAAA-CATA-AATACCGTATGGGCGTATCTACTGTAAGGGC----TGTT--TTAA---A-AACGATATAGTACCga
gi|8 : aAAACTTCGATATAAAAATGAAA-ACTGTTGT--TATAT--TA--------A-------TGAAA-AT---TGTGTTA---CA-CAT-TTATATATAGT--CA-AT-ATA---A-AT-A--T---TA---CCA--TTTC--CTA-TGCT-TTC--AAAGTTTACCCTAG-ATTT--G----AT-------------------------AC----ATA-----A---ATTC---TTGCGT--G-GC-AAAA-G-TA----C-AGAATTTTTTT-T-T--TTTACA--GAAAG-ATA-Acagtggcggatttagaggg
gi|9 : acatgcgcgtggatttatttacgtaccccatcaacggA-ACT-T-CAAATATAA--AA--------GACATAGGTAAAATAA---TTCAGTA---CA-CAG-TT-CA----GTTTCA-TC-ATATATA-ATCA--C---TC---ACA--TGTC--CTA-TGCT-TTCTTTATATTTATCTT----TTT--T----GT---A-----TTGAGTA-T--A----ATCGTAATAT----ATAGATTC---TTGCATGAG-ACAAAAA-A-TACAACC-AGAA-----ATAA-T--TTTACCCGGAAAGTAAA-AATGTA-TT
Alignments
lowQualScore : 11 1 1 11 1 1 1 1 1 1 1 11 1 1 333333 1 1 11 1 11 1 555555555555555555 2222 1 22 111111 1 11 1 1 1 1111 333333333 222222 1 11 2222 1 1 22222 2222 11 222 11 7777777777777777777777 222 1 22222 3333333 2222 3333333 11 11 22222222222222222222 1111 111 44444444444444444444444444444444444444444444444 11 1111 11111 11 2222222222222222222222 11111 111111111111111
lowQualScore : 1 1 88 5 1 5 77 22 5 5 5 5 5 1 5 5 1 1 88 5 1 5 000000 5 5 1 77 1 3 00 3 2222 77 333333333333333333 4444 5 1 00 6 6 555555 3 7 99 3 6 7 2 1 2 7777 222222222 000000 6 33 3333 3 0 55555 1111 33 666 88 4444444444444444444444 1 111 5 77777 2222222 1 0000 2222222 33 33 8 5 5 2 66 55555555555555555555 4 3333 4 8888 4 0 8888 55 4 4 777 4 4 55 777 777 55 55 4 4 333 4 0 6 4 66666666666666666666666666666666666666666666666 777 777 00 4 4 444 3333 4 11111 4 8 00 66 66 5 5 0 5 66 1 4 4 777 4 4 6666 55 55 55 0000000000000000000000 444 2 4 1 0 66666 55 4 999999999999999 4 55 4 4 4
lowQualScore : . . .. . . . .. .. . . . . . . . . . . .. . . . ...... . . . .. . . .. . .... .. .................. .... . . .. . . ...... . . .. . . . . . . .... ......... ...... . .. .... . . ..... .... .. ... .. ...................... . ... . ..... ....... . .... ....... .. .. . . . . .. .................... . .... . .... . . .... .. . . ... . . .. ... ... .. .. . . ... . . . . ............................................... ... ... .. . . ... .... . ..... . . .. .. .. . . . . .. . . . ... . . .... .. .. .. ...................... ... . . . . ..... .. . ............... . .. . . .
lowQualScore : 0 0 55 5 0 5 55 00 5 5 5 0 5 0 0 0 0 0 55 0 0 0 000000 5 5 0 55 0 3 33 3 7777 33 000000000000000000 5555 5 0 00 7 7 333333 3 3 77 3 7 3 0 0 0 3333 000000000 777777 0 33 3333 3 0 00000 2222 88 555 33 5555555555555555555555 0 555 0 00000 0000000 0 7777 2222222 22 88 0 7 7 3 99 99999999999999999999 4 3333 0 5555 0 3 5555 55 0 0 000 0 0 55 000 000 55 55 0 0 000 0 5 1 0 99999999999999999999999999999999999999999999999 888 888 66 4 4 999 9999 4 11111 4 9 66 11 44 0 7 6 0 11 9 6 0 000 0 0 9999 55 55 55 7777777777777777777777 444 6 4 3 8 55555 55 0 888888888888888 0 55 0 0 4
consensus : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTG-CACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACAT-AGATAATCTCTNTGTCTTATAGAAG-G-AATGTATATCTAAC-T-AC-TT-ACTGTAAACCATAGA-ATCG-ATTGGCGTATC-TA-----AGTGC----TGTT--TTGAN--AAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----AT---A-----ATGTGTA------TNAT----ATAT----A---ATTC---TTGCAT--GG-C-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-CTG-A--TT--TGGATATT--GA--A-------TC-ACG-AATCTTGGATTTCGAATCTTG-AATTTCGAATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
Reference ( family-120 ) : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GGGGGGGGGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTG-CACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCATAT-AGATAATCTCTNTGTCTTATAGAAG-G-AATGTATATCTAAC-T-AC-TTAACTGTAAACCATAGA-ATCG-ATTGGCGTATC-TA-----AGTGC----TGTT--TTGAC--AAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----AT---A-----ATGTGTA------TAAT----ATAT----A---ATTC---TTGCAT--GG-C-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-CTG-A--TT--TGGATATT--GA--A-------TC-NCG-AATCTTGGATTTCGAATNTTG-AATTTCGAATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
gi|1 : ATTAGCCACTAATATTACTATT-ATAGTGACAAAATGA--AGTTTTAAATTGAC-TCACATGAGACTAG-TGA-GTCAAGA-TTTCAAGCAGAGATTAAGGCAATTAACTCTAATCAATTAT-TAAGGGAC-TGGACCAGATTTCCTTAGTCCACATGGATAATGGGGG-AAAAAGAAGGGGGGG
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataG-CACTGGCCAGCC-ACAGAGAACTTTGTTACATT-TCT-TCATAT-A--TAATCT--ATGTCTT-TAAAAGCG-AATG-ATATCTAACAT-AC-TTAACTGTAAACCATAGA-ATCG-ATTGGCATATCGTA-----AGTGCACTTTGTTTCTTGCCCTAAACGATGTAGAACAGGGGTCCTAACACTgcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctaacacttcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaagggggggAACACTTCAGACTCCGA--TAAA--T-ATA-AAT-GTCA---ATAATTAACTACTAACA-------CAAAC-AACCCGTTGTTA-A-CTTTTATCTTATA----G---CA-TTAATA---ATAT-T--C---T----TTA--T-TCGGCTA-TGCT-TTC--AAATATTTATCCTAGTACTT--TTTCCAT---ACTATCATATGTACTGACTTCAT----ATATTAGAA---ATTCATTTTACAT--GAAC-AAAACA-TA----C-AGAA-----AT-A-TCCTTAACC--CAAAG-AAtcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|10 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaaggggggggcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctAAA-AT---GTTGTAACA-C----AT-TTTTA----GT--AA-ATA-TA---G-AT-A--C---TA---CCA--TCTC--CTT-TGAT-TTC--AA-AATTTACCATAG-ATTTGAT----ATA--A-----ATGTGTA------CCAT----ATA-----A---AATC---TTGGAT--AA-C-AAAT-G-TA----CAAAAA-----AT-ATT--TTTACT--GA-----------------TATTCTACATAATC
gi|11 : AT-TTGAAGT--ATTA--TTTTGA-TTTTT---G-TTGGTCTG----TT--TTGATATT--GATTA-------T--TTG-ATTCT--GATTTCG-----------TCC--ATATCTTTGGATTTTTT-GAATTTAGT----AATGGA--T-TCG--AT--GAGTCC-TTCTGGGTCTTTCG
gi|12 : attaactacaggT-TTGAAGT--ATGAATTC-TGATTTTTG---C-TTGG-CTGTATTTT--TGGATA-T--GA--A-------TTAACA-TACTTTGAAATT----TCTTG-GA-GTCGAA-AT-GTT-GA--TTTC-GAATTTGGTGATTAA-GAACTTGTCGA-AT--GAG--C-TTCTGt
gi|13 : tT-TTGAAGT--ATAAATC--TGA-TTTTGGTGA-TTGG-CTG-A--TT--TGATTATTTTGA--A-------TC-ACGGAATCTTGAATT--GAATCTTGGAATTTCGAAT-T-TTTGGA--TTTT-GAATTTAG-----AA-T----TGTCGA-AT--GAG-CC-TTCTGGG-CTcgg
gi|14 : tGAAGT--ATGAATCCTTTA-TTTTG---A-TTGG-TTG-G--TT--TAGATATT--GA--
gi|15 : atacAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-TTG-A--TT--TGTATAAT--GA--A-------TC-TGG-AATTTTGGATTTCGAATATTG-AATTT--A--------GGA--TCAT-GAATTT--------A-GAA--TGTCGA-ATGAGAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccttatggacttt
gi|16 : ggaA-TTCTG---A-TTGG-TTG-A--TT--CAGATATT--GA--A-------TC-TTG-AA-ATTG---NNNNNNNNNNN-NNNNNNNNNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NNNNNN-NN--GAG-CC-TTCTGGG-CTTTCG
gi|17 : TGTTACA-C----TT-TTAAA----GT--CAATTA-TA---A-AT-AGGT---TGGAGCCA--TGTC--CTA-TACT-TTC-------TCTATCT-----TTT--T----AT---t
gi|18 : TTTCGAAT---TTTGGA--TTTT-GAATTTAG-----AA--------------T--GAG-CC-TTCTGGG-CTTTCGttttgaggt
gi|2 : ATGAGACACTGGCAT--CTATTTATGTTGACAAA-TGACCAATTTTATTCTGACATC-CATG-GACTAGGTGATGTCCAGACTTTCAAG-AGTGAAT--GG-ACTTAACT-TA------TATATAAGGGACTTGGACCAGTTTT--TAAGT-CACATGGGAACTGGGGG-GAAAAAGA-------AGGGGGGGGGGTATGTACATTTGTACCATTGACTAAAATCGGCTTGACATTATTCACTGCCACTGGCCAGCTCACAGAGAA-TTTGTAATATT-TCTATCA-ATAAGATA--CTCTGTGTTTTA---AAG-GAAATATATATCTAAC-TAAC-TT-ACTGTAAA-CAT-----TAG-GTTGGTGTACC-TA-----AGTGC----TGTT--TTGAT--AAACGATGTCGTATCGGA--CCTAATATTGACATAATATTGTGT----------------------TTTCAATTTTGC---AATGACAATT-----GACGTCGTGATTGTTATTA----CACT---GA--CCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TTAAA-AA---GTTGTTACT-T----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CGG--TGT---CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----ATTAAA-----ATGTGTA-------AAT----ATAT----A---ATTC---TTGCAT--GA-C-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CAAAG-AAA-AATGTA-TTTATTTTACAGAATCAG
gi|2 : ccAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-CTG-A--TT--TGGATATT--GA--ATCTTGAA---------TCTTGGATTTCAAATATTG-AATTTCGAATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGA-CTTTCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttgaagtatgaattcttgattttgattggctgatttggatattgaatcttgaatcttggatttcaaatattgaatttcgaatattttggattttgaatttagaagaatgtcgaatgagccttctggactttcg
gi|3 : ccatgagacactggcatctatttatgttgacaaatgaccaattttattctgacatccatggactaggtgatgtccagactttcaagagtgaatggacttaacttatatataagggacttggaccagtttttaagtcacatgggaactggggggaaaaagaaggggggggggtatgtacatttgtaccattgactaaaatcggcttgacattattcactgccactggccagctcacagagaatttgtaatatttctatcaataagatactctgtgttttaaaggaaatatatatctaactaacttactgtaaacattaggttggtgtacctaagtgctgttttgataaacgatgtcgtatcggacctaatattgacataatattgtgttttcaattttgcaatgacaattgacgtcgtgattgttattacactgaccgaataaataaaactttcatataaaaattaaaaagttgttacttatttatagtcattataaatactacggtgtctatgctttcaatgtttatcctagattttattaaaatgtgtaaatatataattcttgcatgacaaaaatacagaaatatcttacccaaagaaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAA-ACT-TCAA--TATAA---------AA-A-------TATAA-AA---GTTGTTACAAC----AT-TTAAA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TACT-TTC--TA-TATTTATCTTTG-ACTTGAT----ATA--A-----ATGTGTAT-----TATT----ATAA----A---ATTC---TTGCAT--GG-T-AAAA-A-AAC---C-AGAA-----AT-A-TA-TTTACC--GAAAG--TA-AATGTA-TTTATTTTACATAATCAG
gi|3 : T-TTGAAGT--ATGAATTCTTGA-TTTTG---A-TTGG-CTG-A---T--TGGGTATT--GA--A-------TC-AC-----NNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NGTCGA-AT--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacttttgaagtatgaattcttgattttgattggctgattgggtattgaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaatgagccttctgggctttc
gi|4 : aaaacttcaatataaaaatataaaagttgttacaacatttaaagtcattataaatactaccatgtcctatactttctatatttatctttgacttgatataaatgtgtattattataaaattcttgcatggtaaaaaaaccagaaatatatttaccgaaagtaaatgtatttattttacataatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaactCA--TATTG---------AA-A-------TAAAA-AA----TTGTTACA-C----AT-TTATA----GT--CA-TTA-T-------T-G--CATTTA---CGAACTGTC--CTATTGCCGTTC--GA-TGTTTATCCTTG-ATT--------------------------------TAAT----ATATA---A---ATTC---GTGCATG-GG-C-AAAA-GTTA----C-AGAA-----AT-ATT--TTTACC--GAAAG-AAATGATGTACTTTATTTTTCATAATC
gi|4 : AATCTTGAAGT--ATGAATTC-TGA-TTTTG---ATTTGG-CTG-A--TTTCTGGATATT--GA--A-------TC-ACG-AATCTT-GATTTTGAATCTTG-AATTTCGA--AT-TTTGGA--TTTTGGAATT---------A-GAA--TGTCGATAT--GAG-CCTTTCAGGG-CTTTCGtgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcttgaagtatgaattctgattttgatttggctgatttctggatattgaatcacgaatcttgattttgaatcttgaatttcgaattttggattttggaattagaatgtcgatatgagcctttcagggctttcg
gi|5 : catattgaaataaaaaattgttacacatttatagtcattattgcatttacgaactgtcctattgccgttcgatgtttatccttgatttaatatataaattcgtgcatgggcaaaagttacagaaatatttttaccgaaagaaatgatgtactttatttttcataatctgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAA-ACT-TCAA--TATAA---------AT-A-------TAAAA-AA---GTTGT-ACA-C----AT-TTAAA----GT--CA-T-A-TA---A-AT-A--C---TA---CCA--TGCC--CTA-TGCT-CTC-----TATTTATCTTTG-ATTTG-T----AT---A-----ATATGAA------TTAT----ATA-----A---ATTC---TTGCAT--GG-T-TAAA-A--A----C-AGAA-----AT-A-T--TT-ACC--GAAAG-TAA-AATGTA-TTTATTTTACAGAATCAG
gi|5 : T-TTGAAGTTAATGA-TTCTTCA-TTT-G---A-TTGG-CTG-A--TT--TGGATATT--GA--A-------TC-ACA-AATC----NNNNNNNNNNNNN-NNNNNNNNNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NGTCGA-AA--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaactttgaagttaatgattcttcatttgattggctgatttggatattgaatcacaaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaaagagccttctgggctttc
gi|6 : aaacttcaatataaatataaaaaagttgtacacatttaaagtcatataaatactaccatgccctatgctctctatttatctttgatttgtataatatgaattatataaattcttgcatggttaaaaacagaaatatttaccgaaagtaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacTC-TA-----AGTGC----TGTT--TTGAA--TAACGATGTAGTACCAGA--CCTATTATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTCCTAAAAT-ATAATTTTTTCAACG-------TGTTAGTAAGAGTACT---GA--CCGA-ATATT--T-AAACACT-TTCA--TATAA---------AT-A-------TAAAA-AAT--GTTGTTACT-T----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TACT-TCC--AA-TGTTTATCCTAG-ATTT--T----AT---ATAT--ATGTGTA------TTAT----ATA-----A---ATTT---TTGCAT--GA-C-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CCAAG-AAA-AATGTA-TT
gi|7 : AGT-CACATG--AACTGGGGGTGGGGGGGGGGGGGGGAGGGGGGGGGGC-----------TA--A--GACTA----CGGCT-GACATAATTTACTG------GC-AGCCCACA----------TAGTATTCTATATC-CAT-AGATAATCTTTTTGT-TTATAGAA-----AT-TATATCGAAC-T-TCATTTACTGTAAAC-ATAAATACCGTATGGGCGTATC-TACTGTAAGGGC----TGTT--TTAA---AAACGATATAGTACCga
gi|8 : a--AAACTTCGATATAAAAATGAAA-ACTGTTGT--TATAT---------TA-A-------TGAAA-AT---TGTGTTACA-C----AT-TTATATATAGT--CA-ATA-TA---A-AT-A--T---TA---CCA--TTTC--CTA-TGCT-TTC--AA-AGTTTACCCTAG-ATTT--G----AT---A----------CA------TA--------------A---ATTC---TTGCGT--GG-C-AAAA-G-TA----C-AGAATTTTTTT-T-T--TTTACA--GAAAG-ATA-Acagtggcggatttagaggg
gi|9 : acatgcgcgtggatttatttacgtaccccatcaacggA-ACT-T-CAAATATAA---------AA-GACATAGGTAAAATAA---TTCAGTACA-C----AG-TT-CA----GTTTCA-TCA-TATATA-ATCA--C---TC---ACA--TGTC--CTA-TGCT-TTCTTTA-TATTTATCTT----TTT--T----GT---A-----TTGAGTA------TAATCGTAATAT----ATAGATTC---TTGCATGAGA-CAAAAA-A-TACAACC-AGAA-----ATAA-T--TTTACCCGGAAAGTAAA-AATGTA-TT
Alignments
lowQualScore : 11 1 1 11 1 1 1 1 1 1 1 11 1 1 333333 1 1 11 1 11 1 555555555555555555 2222 1 22 111111 1 11 22 1 1 1111 333333333 222222 1 2222222 1 1 22222 2222 11 111 11 7777777777777777777777 222 1 22222 3333333 2222 3333333 11 11 22222222222222222222 1111 111 333333333333333333333333333333333333333333333333 11 1111 11111 11 555555555555555555 333333333333333333333333 111111111111111
lowQualScore : 1 1 88 5 1 5 77 22 5 5 5 5 5 1 5 5 1 1 88 5 1 5 000000 5 5 1 77 1 3 00 3 6 333333333333333333 4444 5 1 00 6 6 555555 3 7 99 00 7 2 1 2 7777 222222222 777777 3 8888888 3 0 55555 1111 33 666 1 88 4444444444444444444444 1 111 5 77777 2222222 1 0000 2222222 33 33 8 5 5 2 66 55555555555555555555 4 3333 4 8888 4 0 8888 55 4 4 777 4 4 55 777 777 55 55 4 4 333 4 0 6 4 888888888888888888888888888888888888888888888888 777 777 00 4 4 444 3333 4 11111 4 8 00 66 66 5 5 0 5 66 1 4 777 4 4 6666 55 55 000000000000000000 4 666666666666666666666666 55 4 999999999999999 4 55 4 4 4
lowQualScore : . . .. . . . .. .. . . . . . . . . . . .. . . . ...... . . . .. . . .. . . .................. .... . . .. . . ...... . . .. .. . . . . .... ......... ...... . ....... . . ..... .... .. ... . .. ...................... . ... . ..... ....... . .... ....... .. .. . . . . .. .................... . .... . .... . . .... .. . . ... . . .. ... ... .. .. . . ... . . . . ................................................ ... ... .. . . ... .... . ..... . . .. .. .. . . . . .. . . ... . . .... .. .. .................. . ........................ .. . ............... . .. . . .
lowQualScore : 0 0 55 5 0 5 55 00 5 5 5 0 5 0 0 0 0 0 55 0 0 0 000000 5 5 0 55 0 3 33 3 7 000000000000000000 5555 5 0 00 7 7 333333 3 3 33 00 3 0 0 0 3333 000000000 000000 3 7777777 3 0 00000 2222 88 222 0 33 5555555555555555555555 0 555 0 00000 0000000 0 7777 2222222 22 88 0 7 7 3 99 99999999999999999999 4 3333 0 5555 0 3 5555 55 0 0 000 0 0 55 000 000 55 55 0 0 000 0 5 1 0 999999999999999999999999999999999999999999999999 888 888 66 4 4 999 9999 4 11111 4 9 66 11 44 0 7 6 0 11 9 0 000 0 0 9999 55 55 888888888888888888 4 000000000000000000000000 55 0 888888888888888 0 55 0 0 4
consensus : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACATA-GATAATCTCTNTGTCTTATAGAAG-GAA-TGTATATCTAAC-T--A-CTTA-CTGTAAAC-ATAGA-ATCG-ATTGGCGTATC-TA-----AGTGC----TGTT--TTG--ANAAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----AT---A-----ATGTGTA------TCA-T----ATA-----A---ATTC---TTGCAT--GG-C-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACG-AATCTTG-ATTTCGAATCTTG-GATTT--------------CG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
Reference ( family-120 ) : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACATA-GATAATCTCTNTGTCTTATAGAAG-GAA-TGTATATCTAAC-T--A-CTTA-CTGTAAACCATAGA-ATCG-ATTGGCGTATC-TA-----AGTGC----TGTT--TTG--ANAAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----AT---A-----ATGTGTA------TNA-T----ATAT----A---ATTC---TTGCAT--GG-C-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACG-AATCTTGGATTTCGAATCTTG-AATTT--------------CG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
gi|1 : ATTAGCCACTAATATTACTATT-ATAGTGACAAAATGA--AGTTTTAAATTGAC-TCACATGAGACTAG-TGA-GTCAAGA-TTTCAAGCAGAGATTAAGGCAATTAACTCTAATCAATTAT-TAAGGGAC-TGGACCAGATTTCCTTAGTCCACATGGATAATGGGGG-AAAAAGAAGGGGGGG
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataGC-ACTGGCCAGCC-ACAGAGAACTTTGTTACATT-TCT-TCATATA---TAATCT--ATGTCTT-TAAAAGCGAA-TG-ATATCTAACAT--A-CTTAACTGTAAACCATAGA-ATCG-ATTGGCATATCGTA-----AGTGCACTTTGTTTCTTGCCCTAAACGATGTAGAACAGGGGTCCTAACACTgcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctaacacttcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaagggggggAACACTTCAGACTCCGA--TAAA--T-ATA-AAT-GTCA---ATAATTAACTACTAACA-------CAAAC-AACCCGTTGTTA-A-CTTTTATCTTATA----G---CA-TTAATA---ATAT-T--C---T----TTA--T-TCGGCTA-TGCT-TTC--AAATATTTATCCTAGTACTT--TTTCCAT---ACTATCATATGTACTGACTTCA-T----ATATTAGAA---ATTCATTTTACAT--GAAC-AAAACA-TA----C-AGAA-----AT-A-TCCTTAACC--CAAAG-AAtcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|10 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaaggggggggcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctAAA-AT---GTTGTAACA-C----AT-TTTTA----GT--AA-ATA-TA---G-AT-A--C---TA---CCA--TCTC--CTT-TGAT-TTC--AA-AATTTACCATAG-ATTTGAT----ATA--A-----ATGTGTA------CCA-T----ATA-----A---AATC---TTGGAT--AA-C-AAAT-G-TA----CAAAAA-----AT-ATT--TTTACT--GA-----------------TATTCTACATAATC
gi|11 : AT-TTGAAGT--ATTA--TTTTGA-TTTTT---GTT-GGTCTG----TTT--TGATATT--GA------------TT--ATTT-GATTCT---GATTT--------------CGTCCATATCTTTGGATTTTTT-GAATTTAGT----AATGGA--T-TCG--AT--GAGTCC-TTCTGGGTCTTTCG
gi|12 : attaactacaggT-TTGAAGT--ATGAATTC-TGATTTTTG---CTT-GG-CTGTATTTTT--GGATA-T--GAATTAACA-TACTTTGAAATT----TCTTG-GA-GT--------------CG--AA-AT-GTT-GA--TTTC-GAATTTGGTGATTAA-GAACTTGTCGA-AT--GAG--C-TTCTGt
gi|13 : tT-TTGAAGT--ATAAATC--TGA-TTTTGGTGATT-GG-CTG-A--TTT--GATTATTTTGAATC-ACGGAATCTTGAATT--GAATCTTGGAATTT--------------CG--AAT-T-TTTGGA--TTTT-GAATTTAG-----AA-T----TGTCGA-AT--GAG-CC-TTCTGGG-CTcgg
gi|14 : tGAAGT--ATGAATCCTTTA-TTTTG---ATT-GG-TTG-G--TTT--AGATATT--GA
gi|15 : atacAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-TTG-A--TTT--GTATAAT--GAATC-TGG-AATTTTGGATTTCGAATATTG-AATTT------------------A--------GGA--TCAT-GAATTT--------A-GAA--TGTCGA-ATGAGAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccttatggacttt
gi|16 : ggaA-TTCTG---ATT-GG-TTG-A--TTC--AGATATT--GAATC-TTG-AA-ATTG---NNNNNNNNNNN-NNNNN--------------NN--NNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NNNNNN-NN--GAG-CC-TTCTGGG-CTTTCG
gi|17 : TGTTACA-C----TT-TTAAA----GT--CAATTA-TA---A-AT-AGGT---TGGAGCCA--TGTC--CTA-TACT-TTC-------TCTATCT-----TTT--T----AT---t
gi|18 : TTT--------------CG--AAT---TTTGGA--TTTT-GAATTTAG-----AA--------------T--GAG-CC-TTCTGGG-CTTTCGttttgaggt
gi|2 : ATGAGACACTGGCAT--CTATTTATGTTGACAAA-TGACCAATTTTATTCTGACATC-CATG-GACTAGGTGATGTCCAGACTTTCAAG-AGTGAAT--GG-ACTTAACT-TA------TATATAAGGGACTTGGACCAGTTTT--TAAGT-CACATGGGAACTGGGGG-GAAAAAGA-------AGGGGGGGGGGTATGTACATTTGTACCATTGACTAAAATCGGCTTGACATTATTCACTGCCACTGGCCAGCTCACAGAGAA-TTTGTAATATT-TCTATCA-ATAAGATA--CTCTGTGTTTTA---AAG-GAAATATATATCTAAC-T--AACTTA-CTGTAAAC-AT-----TAG-GTTGGTGTACC-TA-----AGTGC----TGTT--TTG--ATAAACGATGTCGTATCGGA--CCTAATATTGACATAATATTGTGT----------------------TTTCAATTTTGC---AATGACAATT-----GACGTCGTGATTGTTATTA----CACT---GA--CCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TTAAA-AA---GTTGTTACT-T----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CGG--TGT---CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----ATTAAA-----ATGTGTA-------AA-T----ATAT----A---ATTC---TTGCAT--GA-C-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CAAAG-AAA-AATGTA-TTTATTTTACAGAATCAG
gi|2 : ccAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC----------------TTGAATCTTG-GATTTCAAATATTGAATTTCG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGA-CTTTCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttgaagtatgaattcttgattttgattggctgatttggatattgaatcttgaatcttggatttcaaatattgaatttcgaatattttggattttgaatttagaagaatgtcgaatgagccttctggactttcg
gi|3 : ccatgagacactggcatctatttatgttgacaaatgaccaattttattctgacatccatggactaggtgatgtccagactttcaagagtgaatggacttaacttatatataagggacttggaccagtttttaagtcacatgggaactggggggaaaaagaaggggggggggtatgtacatttgtaccattgactaaaatcggcttgacattattcactgccactggccagctcacagagaatttgtaatatttctatcaataagatactctgtgttttaaaggaaatatatatctaactaacttactgtaaacattaggttggtgtacctaagtgctgttttgataaacgatgtcgtatcggacctaatattgacataatattgtgttttcaattttgcaatgacaattgacgtcgtgattgttattacactgaccgaataaataaaactttcatataaaaattaaaaagttgttacttatttatagtcattataaatactacggtgtctatgctttcaatgtttatcctagattttattaaaatgtgtaaatatataattcttgcatgacaaaaatacagaaatatcttacccaaagaaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAA-ACT-TCAA--TATAA---------AA-A-------TATAA-AA---GTTGTTACAAC----AT-TTAAA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TACT-TTC--TA-TATTTATCTTTG-ACTTGAT----ATA--A-----ATGTGTA------TTATT----ATAA----A---ATTC---TTGCAT--GG-T-AAAA-A-AAC---C-AGAA-----AT-A-TA-TTTACC--GAAAG--TA-AATGTA-TTTATTTTACATAATCAG
gi|3 : T-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A---TT--GGGTATT--GAATC-AC-----NNNNNNNNNNNNNNNNNN-NNNNN--------------NN--NNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NGTCGA-AT--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacttttgaagtatgaattcttgattttgattggctgattgggtattgaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaatgagccttctgggctttc
gi|4 : aaaacttcaatataaaaatataaaagttgttacaacatttaaagtcattataaatactaccatgtcctatactttctatatttatctttgacttgatataaatgtgtattattataaaattcttgcatggtaaaaaaaccagaaatatatttaccgaaagtaaatgtatttattttacataatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaactCA--TATTG---------AA-A-------TAAAA-AA----TTGTTACA-C----AT-TTATA----GT--CA-TTA-T-------T-G--CATTTA---CGAACTGTC--CTATTGCCGTTC--GA-TGTTTATCCTTG-ATT---------T---A-----AT-------------A-T----ATA-----A---ATTC---GTGCATG-GG-C-AAAA-GTTA----C-AGAA-----AT-ATT--TTTACC--GAAAG-AAATGATGTACTTTATTTTTCATAATC
gi|4 : AATCTTGAAGT--ATGAATTCT-GA-TTTTG---ATTTGG-CTG-A--TTTCTGGATATT--GAATC-ACG-AATCTTG-ATTTTGAATCTTG-AATTT--------------CG--A--AT-TTTGGA--TTTTGGAATT---------A-GAA--TGTCGATAT--GAG-CCTTTCAGGG-CTTTCGtgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcttgaagtatgaattctgattttgatttggctgatttctggatattgaatcacgaatcttgattttgaatcttgaatttcgaattttggattttggaattagaatgtcgatatgagcctttcagggctttcg
gi|5 : catattgaaataaaaaattgttacacatttatagtcattattgcatttacgaactgtcctattgccgttcgatgtttatccttgatttaatatataaattcgtgcatgggcaaaagttacagaaatatttttaccgaaagaaatgatgtactttatttttcataatctgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAA-ACT-TCAA--TATAA---------AT-A-------TAAAA-AA---GTTGT-ACA-C----AT-TTAAA----GT--CA-T-A-TA---A-AT-A--C---TA---CCA--TGCC--CTA-TGCT-CTC-----TATTTATCTTTG-ATTTG-T----AT---A-----ATATGAA------TTA-T----ATA-----A---ATTC---TTGCAT--GG-T-TAAA-A--A----C-AGAA-----AT-A-T--TT-ACC--GAAAG-TAA-AATGTA-TTTATTTTACAGAATCAG
gi|5 : T-TTGAAGTTAATGA-TTCTTCA-TTT-G---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACA-AATC----NNNNNNNNNNNNN-NNNNN--------------NN--NNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NGTCGA-AA--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaactttgaagttaatgattcttcatttgattggctgatttggatattgaatcacaaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaaagagccttctgggctttc
gi|6 : aaacttcaatataaatataaaaaagttgtacacatttaaagtcatataaatactaccatgccctatgctctctatttatctttgatttgtataatatgaattatataaattcttgcatggttaaaaacagaaatatttaccgaaagtaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacTC-TA-----AGTGC----TGTT--TTG--AATAACGATGTAGTACCAGA--CCTATTATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTCCTAAAAT-ATAATTTTTTCAACG-------TGTTAGTAAGAGTACT---GA--CCGA-ATATT--T-AAACACT-TTCA--TATAA---------AT-A-------TAAAA-AAT--GTTGTTACT-T----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TACT-TCC--AA-TGTTTATCCTAG-ATTT--T----AT---ATAT--ATGTGTA------TTA-T----ATA-----A---ATTT---TTGCAT--GA-C-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CCAAG-AAA-AATGTA-TT
gi|7 : AGT-CACATG--AACTGGGGGTGGGGGGGGGGGGGGGAGGGGGGGGGGC-----------TA--A--GACTA----CGGCT-GACATAATTTACTG------GC-AGCCCACA----------TAGTATTCTATATC-CATA-GATAATCTTTTTGT-TTATAGAA----A-T-TATATCGAAC-TTCA-TTTA-CTGTAAAC-ATAAATACCGTATGGGCGTATC-TACTGTAAGGGC----TGTT--TT---AAAAACGATATAGTACCga
gi|8 : a--AAACTTCGATATAAAAATGAAA-ACTGTTGT--TATAT---------TA-A-------TGAAA-AT---TGTGTTACA-C----AT-TTATATATAGT--CA-ATA-TA---A-AT-A--T---TA---CCA--TTTC--CTA-TGCT-TTC--AA-AGTTTACCCTAG-ATTT--G----AT---A-------------------CA-T----A-------A---ATTC---TTGCGT--GG-C-AAAA-G-TA----C-AGAATTTTTTT-T-T--TTTACA--GAAAG-ATA-Acagtggcggatttagaggg
gi|9 : acatgcgcgtggatttatttacgtaccccatcaacggA-ACT-T-CAAATATAA---------AA-GACATAGGTAAAATAA---TTCAGTACA-C----AG-TT-CA----GTTTCA-TCA-TATATA-ATCA--C---TC---ACA--TGTC--CTA-TGCT-TTCTTTA-TATTTATCTT----TTT--T----GT---A-----TTGAGTA------TAA-TCGTAATAT----ATAGATTC---TTGCATGAGA-CAAAAA-A-TACAACC-AGAA-----ATAA-T--TTTACCCGGAAAGTAAA-AATGTA-TT
Alignments
lowQualScore : 11 1 1 11 1 1 1 1 1 1 1 11 1 1 333333 1 1 11 1 11 1 555555555555555555 2222 1 22 111111 1 11 22 1 1 333333333333333 222222 1 1 2222 1 33333 2222 11 111 11 7777777777777777777777 222 1 22222 3333333 2222 3333333 11 11 22222222222222222222 1111 111 55555555555555555555555555555555555555555 11111 11 1111 11111 11 22222222222222 11111111 111111111111111
lowQualScore : 1 1 88 5 1 5 77 22 5 5 5 5 5 1 5 5 1 1 88 5 1 5 000000 5 5 1 77 1 3 00 3 6 333333333333333333 4444 5 1 00 6 6 555555 3 7 99 00 7 2 1 2 111111111111111 777777 3 3 3333 3 55555 1111 33 666 1 88 4444444444444444444444 1 111 5 77777 2222222 1 0000 2222222 33 33 8 5 5 2 66 55555555555555555555 4 3333 4 8888 4 0 8888 55 4 4 777 4 4 55 777 777 55 55 4 4 333 4 0 6 4 55555555555555555555555555555555555555555 4 4 55555 777 00 4 4 444 3333 4 11111 4 8 00 66 66 5 5 0 5 66 1 4 777 4 4 6666 55 55 44444444444444 0 8 777 4 88888888 55 4 999999999999999 4 55 4 4 4
lowQualScore : . . .. . . . .. .. . . . . . . . . . . .. . . . ...... . . . .. . . .. . . .................. .... . . .. . . ...... . . .. .. . . . . ............... ...... . . .... . ..... .... .. ... . .. ...................... . ... . ..... ....... . .... ....... .. .. . . . . .. .................... . .... . .... . . .... .. . . ... . . .. ... ... .. .. . . ... . . . . ......................................... . . ..... ... .. . . ... .... . ..... . . .. .. .. . . . . .. . . ... . . .... .. .. .............. . . ... . ........ .. . ............... . .. . . .
lowQualScore : 0 0 55 5 0 5 55 00 5 5 5 0 5 0 0 0 0 0 55 0 0 0 000000 5 5 0 55 0 3 33 3 7 000000000000000000 5555 5 0 00 7 7 333333 3 3 33 00 3 0 0 0 333333333333333 000000 3 3 3333 3 00000 2222 88 222 0 33 5555555555555555555555 0 555 0 00000 0000000 0 7777 2222222 22 88 0 7 7 3 99 99999999999999999999 4 3333 0 5555 0 3 5555 55 0 0 000 0 0 55 000 000 55 55 0 0 000 0 5 1 0 88888888888888888888888888888888888888888 4 4 66666 888 66 4 4 999 9999 4 11111 4 9 66 11 44 0 7 6 0 11 9 0 000 0 0 9999 55 55 66666666666666 4 3 888 0 44444444 55 0 888888888888888 0 55 0 0 4
consensus : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACATA-GATAATCTCTNTGTCTTATAGAAG-GAA-TGTATATCTAAC-T--A-CTTA-CTGTAAAC-ATAGA-ATCG-ATTGGCGTATC-----TAAGTGC----TGTT--TTG--ANAAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----AT---A-----ATGTGTA------T--------TA-TAT-A-----AATTC---TTGCAT--GG-C-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACG-AATCTT-G-ATTTCGAA---TCTTGGA-TTTCG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
Reference ( family-120 ) : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACATA-GATAATCTCTNTGTCTTATAGAAG-GAA-TGTATATCTAAC-T--A-CTTA-CTGTAAAC-ATAGA-ATCG-ATTGGCGTATC-----TAAGTGC----TGTT--TTG--ANAAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----AT---A-----ATGTGTA------T--------CA-TAT-A-----AATTC---TTGCAT--GG-C-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACG-AATCTT-G-ATTTCGAA---TCTTGGA-TTTCG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
gi|1 : ATTAGCCACTAATATTACTATT-ATAGTGACAAAATGA--AGTTTTAAATTGAC-TCACATGAGACTAG-TGA-GTCAAGA-TTTCAAGCAGAGATTAAGGCAATTAACTCTAATCAATTAT-TAAGGGAC-TGGACCAGATTTCCTTAGTCCACATGGATAATGGGGG-AAAAAGAAGGGGGGG
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataGC-ACTGGCCAGCC-ACAGAGAACTTTGTTACATT-TCT-TCATATA---TAATCT--ATGTCTT-TAAAAGCGAA-TG-ATATCTAACAT--A-CTTAACTGTAAACCATAGA-ATCG-ATTGGCATATCG----TAAGTGCACTTTGTTTCTTGCCCTAAACGATGTAGAACAGGGGTCCTAACACTgcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctaacacttcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaagggggggAACACTTCAGACTCCGA--TAAA--T-ATA-AAT-GTCA---ATAATTAACTACTAACA-------CAAAC-AACCCGTTGTTA-A-CTTTTATCTTATA----G---CA-TTAATA---ATAT-T--C---T----TTA--T-TCGGCTA-TGCT-TTC--AAATATTTATCCTAGTACTT--TTTCCAT---ACTATCATATGTACTGACTT--------CA-TAT-ATTAGAAATTCATTTTACAT--GAAC-AAAACA-TA----C-AGAA-----AT-A-TCCTTAACC--CAAAG-AAtcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|10 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaaggggggggcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctAAA-AT---GTTGTAACA-C----AT-TTTTA----GT--AA-ATA-TA---G-AT-A--C---TA---CCA--TCTC--CTT-TGAT-TTC--AA-AATTTACCATAG-ATTTGAT----ATA--A-----ATGTGTA------C--------CA-TAT-A-----AAATC---TTGGAT--AA-C-AAAT-G-TA----CAAAAA-----AT-ATT--TTTACT--GA-----------------TATTCTACATAATC
gi|11 : AT-TTGAAGT--ATTA--TTTTGA-TTTTT---GTT-GGTCTG----TTT--TGATATT--GA------------TT---ATTT-GAT---TCT--GA-TTTCGTCCATATCTTTGGATTTTTT-GAATTTAGT----AATGGA--T-TCG--AT--GAGTCC-TTCTGGGTCTTTCG
gi|12 : attaactacaggT-TTGAAGT--ATGAATTC-TGATTTTTG---CTT-GG-CTGTATTTTT--GGATA-T--GAATTAAC---AT------ACTTTGAAATTTCTTGGA--GTCG--AA-AT-GTT-GA--TTTC-GAATTTGGTGATTAA-GAACTTGTCGA-AT--GAG--C-TTCTGt
gi|13 : tT-TTGAAGT--ATAAATC--TGA-TTTTGGTGATT-GG-CTG-A--TTT--GATTATTTTGAATC-ACGGAATCTT-G-AATT-GAA---TCTTGGAATTTCG--AAT-T-TTTGGA--TTTT-GAATTTAG-----AA-T----TGTCGA-AT--GAG-CC-TTCTGGG-CTcgg
gi|14 : tGAAGT--ATGAATCCTTTA-TTTTG---ATT-GG-TTG-G--TTT--AGATATT--GA
gi|15 : atacAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-TTG-A--TTT--GTATAAT--GAATC-TGG-AATTTTGG-ATTTCGAA---TATTGAA-TTT----A--------GGA--TCAT-GAATTT--------A-GAA--TGTCGA-ATGAGAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccttatggacttt
gi|16 : ggaA-TTCTG---ATT-GG-TTG-A--TTC--AGATATT--GAATC-TTG-AA-ATT-G---NNNNNN---NNNNNNN-NNNNN--NNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NNNNNN-NN--GAG-CC-TTCTGGG-CTTTCG
gi|17 : TGTTACA-C----TT-TTAAA----GT--CAATTA-TA---A-AT-AGGT---TGGAGCCA--TGTC--CTA-TACT-TTC-------TCTATCT-----TTT--T----AT---t
gi|18 : -TTTCG--AAT---TTTGGA--TTTT-GAATTTAG-----AA--------------T--GAG-CC-TTCTGGG-CTTTCGttttgaggt
gi|2 : ATGAGACACTGGCAT--CTATTTATGTTGACAAA-TGACCAATTTTATTCTGACATC-CATG-GACTAGGTGATGTCCAGACTTTCAAG-AGTGAAT--GG-ACTTAACT-TA------TATATAAGGGACTTGGACCAGTTTT--TAAGT-CACATGGGAACTGGGGG-GAAAAAGA-------AGGGGGGGGGGTATGTACATTTGTACCATTGACTAAAATCGGCTTGACATTATTCACTGCCACTGGCCAGCTCACAGAGAA-TTTGTAATATT-TCTATCA-ATAAGATA--CTCTGTGTTTTA---AAG-GAAATATATATCTAAC-T--AACTTA-CTGTAAAC-AT-----TAG-GTTGGTGTACC-----TAAGTGC----TGTT--TTG--ATAAACGATGTCGTATCGGA--CCTAATATTGACATAATATTGTGT----------------------TTTCAATTTTGC---AATGACAATT-----GACGTCGTGATTGTTATTA----CACT---GA--CCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TTAAA-AA---GTTGTTACT-T----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CGG--TGT---CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----ATTAAA-----ATGTGTA---------------AA-TAT-AT----AATTC---TTGCAT--GA-C-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CAAAG-AAA-AATGTA-TTTATTTTACAGAATCAG
gi|2 : ccAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC-TTG-AATCTT-GGATTTCAAA---TATTGAA-TTTCG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGA-CTTTCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttgaagtatgaattcttgattttgattggctgatttggatattgaatcttgaatcttggatttcaaatattgaatttcgaatattttggattttgaatttagaagaatgtcgaatgagccttctggactttcg
gi|3 : ccatgagacactggcatctatttatgttgacaaatgaccaattttattctgacatccatggactaggtgatgtccagactttcaagagtgaatggacttaacttatatataagggacttggaccagtttttaagtcacatgggaactggggggaaaaagaaggggggggggtatgtacatttgtaccattgactaaaatcggcttgacattattcactgccactggccagctcacagagaatttgtaatatttctatcaataagatactctgtgttttaaaggaaatatatatctaactaacttactgtaaacattaggttggtgtacctaagtgctgttttgataaacgatgtcgtatcggacctaatattgacataatattgtgttttcaattttgcaatgacaattgacgtcgtgattgttattacactgaccgaataaataaaactttcatataaaaattaaaaagttgttacttatttatagtcattataaatactacggtgtctatgctttcaatgtttatcctagattttattaaaatgtgtaaatatataattcttgcatgacaaaaatacagaaatatcttacccaaagaaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAA-ACT-TCAA--TATAA---------AA-A-------TATAA-AA---GTTGTTACAAC----AT-TTAAA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TACT-TTC--TA-TATTTATCTTTG-ACTTGAT----ATA--A-----ATGTGTA------T--------TATTATAA-----AATTC---TTGCAT--GG-T-AAAA-A-AAC---C-AGAA-----AT-A-TA-TTTACC--GAAAG--TA-AATGTA-TTTATTTTACATAATCAG
gi|3 : T-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A---TT--GGGTATT--GAATC-AC----NNNN-N-NNNNNNNN---NNNNNNN-NNNNN--NNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NGTCGA-AT--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacttttgaagtatgaattcttgattttgattggctgattgggtattgaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaatgagccttctgggctttc
gi|4 : aaaacttcaatataaaaatataaaagttgttacaacatttaaagtcattataaatactaccatgtcctatactttctatatttatctttgacttgatataaatgtgtattattataaaattcttgcatggtaaaaaaaccagaaatatatttaccgaaagtaaatgtatttattttacataatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaactCA--TATTG---------AA-A-------TAAAA-AA----TTGTTACA-C----AT-TTATA----GT--CA-TTA-T-------T-G--CATTTA---CGAACTGTC--CTATTGCCGTTC--GA-TGTTTATCCTTG-ATT---------T---A-----AT---------------------A-TAT-A-----AATTC---GTGCATG-GG-C-AAAA-GTTA----C-AGAA-----AT-ATT--TTTACC--GAAAG-AAATGATGTACTTTATTTTTCATAATC
gi|4 : AATCTTGAAGT--ATGAATTCT-GA-TTTTG---ATTTGG-CTG-A--TTTCTGGATATT--GAATC-ACG-AATCTT-G-ATTTTGAA---TCTTGAA-TTTCG--A--AT-TTTGGA--TTTTGGAATT---------A-GAA--TGTCGATAT--GAG-CCTTTCAGGG-CTTTCGtgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcttgaagtatgaattctgattttgatttggctgatttctggatattgaatcacgaatcttgattttgaatcttgaatttcgaattttggattttggaattagaatgtcgatatgagcctttcagggctttcg
gi|5 : catattgaaataaaaaattgttacacatttatagtcattattgcatttacgaactgtcctattgccgttcgatgtttatccttgatttaatatataaattcgtgcatgggcaaaagttacagaaatatttttaccgaaagaaatgatgtactttatttttcataatctgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAA-ACT-TCAA--TATAA---------AT-A-------TAAAA-AA---GTTGT-ACA-C----AT-TTAAA----GT--CA-T-A-TA---A-AT-A--C---TA---CCA--TGCC--CTA-TGCT-CTC-----TATTTATCTTTG-ATTTG-T----AT---A-----ATATGAA------T--------TA-TAT-A-----AATTC---TTGCAT--GG-T-TAAA-A--A----C-AGAA-----AT-A-T--TT-ACC--GAAAG-TAA-AATGTA-TTTATTTTACAGAATCAG
gi|5 : T-TTGAAGTTAATGA-TTCTTCA-TTT-G---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACA-AATC-----NNNNNNNN---NNNNNNN-NNNNN--NNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NGTCGA-AA--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaactttgaagttaatgattcttcatttgattggctgatttggatattgaatcacaaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaaagagccttctgggctttc
gi|6 : aaacttcaatataaatataaaaaagttgtacacatttaaagtcatataaatactaccatgccctatgctctctatttatctttgatttgtataatatgaattatataaattcttgcatggttaaaaacagaaatatttaccgaaagtaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacTC-----TAAGTGC----TGTT--TTG--AATAACGATGTAGTACCAGA--CCTATTATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTCCTAAAAT-ATAATTTTTTCAACG-------TGTTAGTAAGAGTACT---GA--CCGA-ATATT--T-AAACACT-TTCA--TATAA---------AT-A-------TAAAA-AAT--GTTGTTACT-T----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TACT-TCC--AA-TGTTTATCCTAG-ATTT--T----AT---ATAT--ATGTGTA------T--------TA-TAT-A-----AATTT---TTGCAT--GA-C-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CCAAG-AAA-AATGTA-TT
gi|7 : AGT-CACATG--AACTGGGGGTGGGGGGGGGGGGGGGAGGGGGGGGGGC-----------TA--A--GACTA----CGGCT-GACATAATTTACTG------GC-AGCCCACA----------TAGTATTCTATATC-CATA-GATAATCTTTTTGT-TTATAGA----AA-T-TATATCGAAC-TTCA-TTTA-CTGTAAAC-ATAAATACCGTATGGGCGTATCTACTGTAAGGGC----TGTT--TT---AAAAACGATATAGTACCga
gi|8 : a--AAACTTCGATATAAAAATGAAA-ACTGTTGT--TATAT---------TA-A-------TGAAA-AT---TGTGTTACA-C----AT-TTATATATAGT--CA-ATA-TA---A-AT-A--T---TA---CCA--TTTC--CTA-TGCT-TTC--AA-AGTTTACCCTAG-ATTT--G----AT--------------------------------A-CAT-A-----AATTC---TTGCGT--GG-C-AAAA-G-TA----C-AGAATTTTTTT-T-T--TTTACA--GAAAG-ATA-Acagtggcggatttagaggg
gi|9 : acatgcgcgtggatttatttacgtaccccatcaacggA-ACT-T-CAAATATAA---------AA-GACATAGGTAAAATAA---TTCAGTACA-C----AG-TT-CA----GTTTCA-TCA-TATATA-ATCA--C---TC---ACA--TGTC--CTA-TGCT-TTCTTTA-TATTTATCTT----TTT--T----GT---A-----TTGAGTA------TAATCGTAATA-TAT-A-----GATTC---TTGCATGAGA-CAAAAA-A-TACAACC-AGAA-----ATAA-T--TTTACCCGGAAAGTAAA-AATGTA-TT
Alignments
lowQualScore : 11 1 1 11 1 1 1 1 1 1 1 11 1 1 333333 1 1 11 1 11 1 555555555555555555 2222 1 22 111111 1 11 22 1 1 333333333333333 222222 1 1 2222 1 33333 2222 11 111 11 7777777777777777777777 222 1 22222 3333333 2222 3333333 11 11 22222222222222222222 1111 111 5555555555555555555555555555555555555555555 111 11 1111 11111 11 22222222222222 11111111 111111111111111
lowQualScore : 1 1 88 5 1 5 77 22 5 5 5 5 5 1 5 5 1 1 88 5 1 5 000000 5 5 1 77 1 3 00 3 6 333333333333333333 4444 5 1 00 6 6 555555 3 7 99 00 7 2 1 2 111111111111111 777777 3 3 3333 3 55555 1111 33 666 1 88 4444444444444444444444 1 111 5 77777 2222222 1 0000 2222222 33 33 8 5 5 2 66 55555555555555555555 4 3333 4 8888 4 0 8888 55 4 4 777 4 4 55 777 777 55 55 4 4 333 4 0 6 4 5555555555555555555555555555555555555555555 4 222 4 777 00 4 4 444 3333 4 11111 4 8 00 66 66 5 5 0 5 66 1 4 777 4 4 6666 55 55 44444444444444 0 8 777 4 88888888 55 4 999999999999999 4 55 4 4 4
lowQualScore : . . .. . . . .. .. . . . . . . . . . . .. . . . ...... . . . .. . . .. . . .................. .... . . .. . . ...... . . .. .. . . . . ............... ...... . . .... . ..... .... .. ... . .. ...................... . ... . ..... ....... . .... ....... .. .. . . . . .. .................... . .... . .... . . .... .. . . ... . . .. ... ... .. .. . . ... . . . . ........................................... . ... . ... .. . . ... .... . ..... . . .. .. .. . . . . .. . . ... . . .... .. .. .............. . . ... . ........ .. . ............... . .. . . .
lowQualScore : 0 0 55 5 0 5 55 00 5 5 5 0 5 0 0 0 0 0 55 0 0 0 000000 5 5 0 55 0 3 33 3 7 000000000000000000 5555 5 0 00 7 7 333333 3 3 33 00 3 0 0 0 333333333333333 000000 3 3 3333 3 00000 2222 88 222 0 33 5555555555555555555555 0 555 0 00000 0000000 0 7777 2222222 22 88 0 7 7 3 99 99999999999999999999 4 3333 0 5555 0 3 5555 55 0 0 000 0 0 55 000 000 55 55 0 0 000 0 5 1 0 7777777777777777777777777777777777777777777 4 222 4 888 66 4 4 999 9999 4 11111 4 9 66 11 44 0 7 6 0 11 9 0 000 0 0 9999 55 55 66666666666666 4 3 888 0 44444444 55 0 888888888888888 0 55 0 0 4
consensus : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACATA-GATAATCTCTNTGTCTTATAGAAG-GAA-TGTATATCTAAC-T--A-CTTA-CTGTAAAC-ATAGA-ATCG-ATTGGCGTATC-----TAAGTGC----TGTT--TTG--ANAAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----AT---A-----ATGTGTAT--------T--------A-TAT---A-AATTC---TTGCAT--GG-C-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACG-AATCTT-G-ATTTCGAA---TCTTGGA-TTTCG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
Reference ( family-120 ) : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACATA-GATAATCTCTNTGTCTTATAGAAG-GAA-TGTATATCTAAC-T--A-CTTA-CTGTAAAC-ATAGA-ATCG-ATTGGCGTATC-----TAAGTGC----TGTT--TTG--ANAAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----AT---A-----ATGTGTAT--------T--------A-TAT---A-AATTC---TTGCAT--GG-C-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACG-AATCTT-G-ATTTCGAA---TCTTGGA-TTTCG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
gi|1 : ATTAGCCACTAATATTACTATT-ATAGTGACAAAATGA--AGTTTTAAATTGAC-TCACATGAGACTAG-TGA-GTCAAGA-TTTCAAGCAGAGATTAAGGCAATTAACTCTAATCAATTAT-TAAGGGAC-TGGACCAGATTTCCTTAGTCCACATGGATAATGGGGG-AAAAAGAAGGGGGGG
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataGC-ACTGGCCAGCC-ACAGAGAACTTTGTTACATT-TCT-TCATATA---TAATCT--ATGTCTT-TAAAAGCGAA-TG-ATATCTAACAT--A-CTTAACTGTAAACCATAGA-ATCG-ATTGGCATATCG----TAAGTGCACTTTGTTTCTTGCCCTAAACGATGTAGAACAGGGGTCCTAACACTgcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctaacacttcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaagggggggAACACTTCAGACTCCGA--TAAA--T-ATA-AAT-GTCA---ATAATTAACTACTAACA-------CAAAC-AACCCGTTGTTA-A-CTTTTATCTTATA----G---CA-TTAATA---ATAT-T--C---T----TTA--T-TCGGCTA-TGCT-TTC--AAATATTTATCCTAGTACTT--TTTCCAT---ACTATCATATGTAC--------TGACTTCATA-TATTAGA-AATTCATTTTACAT--GAAC-AAAACA-TA----C-AGAA-----AT-A-TCCTTAACC--CAAAG-AAtcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|10 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaaggggggggcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctAAA-AT---GTTGTAACA-C----AT-TTTTA----GT--AA-ATA-TA---G-AT-A--C---TA---CCA--TCTC--CTT-TGAT-TTC--AA-AATTTACCATAG-ATTTGAT----ATA--A-----ATGTGTAC--------C--------A-TAT---A-AAATC---TTGGAT--AA-C-AAAT-G-TA----CAAAAA-----AT-ATT--TTTACT--GA-----------------TATTCTACATAATC
gi|11 : AT-TTGAAGT--ATTA--TTTTGA-TTTTT---GTT-GGTCTG----TTT--TGATATT--GA------------TT---ATTT-GAT---TCT--GA-TTTCGTCCATATCTTTGGATTTTTT-GAATTTAGT----AATGGA--T-TCG--AT--GAGTCC-TTCTGGGTCTTTCG
gi|12 : attaactacaggT-TTGAAGT--ATGAATTC-TGATTTTTG---CTT-GG-CTGTATTTTT--GGATA-T--GAATTAAC---AT------ACTTTGAAATTTCTTGGA--GTCG--AA-AT-GTT-GA--TTTC-GAATTTGGTGATTAA-GAACTTGTCGA-AT--GAG--C-TTCTGt
gi|13 : tT-TTGAAGT--ATAAATC--TGA-TTTTGGTGATT-GG-CTG-A--TTT--GATTATTTTGAATC-ACGGAATCTT-G-AATT-GAA---TCTTGGAATTTCG--AAT-T-TTTGGA--TTTT-GAATTTAG-----AA-T----TGTCGA-AT--GAG-CC-TTCTGGG-CTcgg
gi|14 : tGAAGT--ATGAATCCTTTA-TTTTG---ATT-GG-TTG-G--TTT--AGATATT--GA
gi|15 : atacAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-TTG-A--TTT--GTATAAT--GAATC-TGG-AATTTTGG-ATTTCGAA---TATTGAA-TTT----A--------GGA--TCAT-GAATTT--------A-GAA--TGTCGA-ATGAGAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccttatggacttt
gi|16 : ggaA-TTCTG---ATT-GG-TTG-A--TTC--AGATATT--GAATC-TTG-AA-ATT-G---NNNNNN---NNNNNNN-NNNNN--NNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NNNNNN-NN--GAG-CC-TTCTGGG-CTTTCG
gi|17 : TGTTACA-C----TT-TTAAA----GT--CAATTA-TA---A-AT-AGGT---TGGAGCCA--TGTC--CTA-TACT-TTC-------TCTATCT-----TTT--T----AT---t
gi|18 : -TTTCG--AAT---TTTGGA--TTTT-GAATTTAG-----AA--------------T--GAG-CC-TTCTGGG-CTTTCGttttgaggt
gi|2 : ATGAGACACTGGCAT--CTATTTATGTTGACAAA-TGACCAATTTTATTCTGACATC-CATG-GACTAGGTGATGTCCAGACTTTCAAG-AGTGAAT--GG-ACTTAACT-TA------TATATAAGGGACTTGGACCAGTTTT--TAAGT-CACATGGGAACTGGGGG-GAAAAAGA-------AGGGGGGGGGGTATGTACATTTGTACCATTGACTAAAATCGGCTTGACATTATTCACTGCCACTGGCCAGCTCACAGAGAA-TTTGTAATATT-TCTATCA-ATAAGATA--CTCTGTGTTTTA---AAG-GAAATATATATCTAAC-T--AACTTA-CTGTAAAC-AT-----TAG-GTTGGTGTACC-----TAAGTGC----TGTT--TTG--ATAAACGATGTCGTATCGGA--CCTAATATTGACATAATATTGTGT----------------------TTTCAATTTTGC---AATGACAATT-----GACGTCGTGATTGTTATTA----CACT---GA--CCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TTAAA-AA---GTTGTTACT-T----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CGG--TGT---CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----ATTAAA-----ATGTGTA---------A--------A-TAT---ATAATTC---TTGCAT--GA-C-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CAAAG-AAA-AATGTA-TTTATTTTACAGAATCAG
gi|2 : ccAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC-TTG-AATCTT-GGATTTCAAA---TATTGAA-TTTCG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGA-CTTTCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttgaagtatgaattcttgattttgattggctgatttggatattgaatcttgaatcttggatttcaaatattgaatttcgaatattttggattttgaatttagaagaatgtcgaatgagccttctggactttcg
gi|3 : ccatgagacactggcatctatttatgttgacaaatgaccaattttattctgacatccatggactaggtgatgtccagactttcaagagtgaatggacttaacttatatataagggacttggaccagtttttaagtcacatgggaactggggggaaaaagaaggggggggggtatgtacatttgtaccattgactaaaatcggcttgacattattcactgccactggccagctcacagagaatttgtaatatttctatcaataagatactctgtgttttaaaggaaatatatatctaactaacttactgtaaacattaggttggtgtacctaagtgctgttttgataaacgatgtcgtatcggacctaatattgacataatattgtgttttcaattttgcaatgacaattgacgtcgtgattgttattacactgaccgaataaataaaactttcatataaaaattaaaaagttgttacttatttatagtcattataaatactacggtgtctatgctttcaatgtttatcctagattttattaaaatgtgtaaatatataattcttgcatgacaaaaatacagaaatatcttacccaaagaaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAA-ACT-TCAA--TATAA---------AA-A-------TATAA-AA---GTTGTTACAAC----AT-TTAAA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TACT-TTC--TA-TATTTATCTTTG-ACTTGAT----ATA--A-----ATGTGTAT--------T--------ATTATA--A-AATTC---TTGCAT--GG-T-AAAA-A-AAC---C-AGAA-----AT-A-TA-TTTACC--GAAAG--TA-AATGTA-TTTATTTTACATAATCAG
gi|3 : T-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A---TT--GGGTATT--GAATC-AC----NNNN-N-NNNNNNNN---NNNNNNN-NNNNN--NNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NGTCGA-AT--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacttttgaagtatgaattcttgattttgattggctgattgggtattgaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaatgagccttctgggctttc
gi|4 : aaaacttcaatataaaaatataaaagttgttacaacatttaaagtcattataaatactaccatgtcctatactttctatatttatctttgacttgatataaatgtgtattattataaaattcttgcatggtaaaaaaaccagaaatatatttaccgaaagtaaatgtatttattttacataatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaactCA--TATTG---------AA-A-------TAAAA-AA----TTGTTACA-C----AT-TTATA----GT--CA-TTA-T-------T-G--CATTTA---CGAACTGTC--CTATTGCCGTTC--GA-TGTTTATCCTTG-ATT---------T---A-----A---------------T--------A-TAT---A-AATTC---GTGCATG-GG-C-AAAA-GTTA----C-AGAA-----AT-ATT--TTTACC--GAAAG-AAATGATGTACTTTATTTTTCATAATC
gi|4 : AATCTTGAAGT--ATGAATTCT-GA-TTTTG---ATTTGG-CTG-A--TTTCTGGATATT--GAATC-ACG-AATCTT-G-ATTTTGAA---TCTTGAA-TTTCG--A--AT-TTTGGA--TTTTGGAATT---------A-GAA--TGTCGATAT--GAG-CCTTTCAGGG-CTTTCGtgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcttgaagtatgaattctgattttgatttggctgatttctggatattgaatcacgaatcttgattttgaatcttgaatttcgaattttggattttggaattagaatgtcgatatgagcctttcagggctttcg
gi|5 : catattgaaataaaaaattgttacacatttatagtcattattgcatttacgaactgtcctattgccgttcgatgtttatccttgatttaatatataaattcgtgcatgggcaaaagttacagaaatatttttaccgaaagaaatgatgtactttatttttcataatctgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAA-ACT-TCAA--TATAA---------AT-A-------TAAAA-AA---GTTGT-ACA-C----AT-TTAAA----GT--CA-T-A-TA---A-AT-A--C---TA---CCA--TGCC--CTA-TGCT-CTC-----TATTTATCTTTG-ATTTG-T----AT---A-----ATATGAAT--------T--------A-TAT---A-AATTC---TTGCAT--GG-T-TAAA-A--A----C-AGAA-----AT-A-T--TT-ACC--GAAAG-TAA-AATGTA-TTTATTTTACAGAATCAG
gi|5 : T-TTGAAGTTAATGA-TTCTTCA-TTT-G---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACA-AATC-----NNNNNNNN---NNNNNNN-NNNNN--NNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NGTCGA-AA--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaactttgaagttaatgattcttcatttgattggctgatttggatattgaatcacaaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaaagagccttctgggctttc
gi|6 : aaacttcaatataaatataaaaaagttgtacacatttaaagtcatataaatactaccatgccctatgctctctatttatctttgatttgtataatatgaattatataaattcttgcatggttaaaaacagaaatatttaccgaaagtaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacTC-----TAAGTGC----TGTT--TTG--AATAACGATGTAGTACCAGA--CCTATTATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTCCTAAAAT-ATAATTTTTTCAACG-------TGTTAGTAAGAGTACT---GA--CCGA-ATATT--T-AAACACT-TTCA--TATAA---------AT-A-------TAAAA-AAT--GTTGTTACT-T----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TACT-TCC--AA-TGTTTATCCTAG-ATTT--T----AT---ATAT--ATGTGTAT--------T--------A-TAT---A-AATTT---TTGCAT--GA-C-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CCAAG-AAA-AATGTA-TT
gi|7 : AGT-CACATG--AACTGGGGGTGGGGGGGGGGGGGGGAGGGGGGGGGGC-----------TA--A--GACTA----CGGCT-GACATAATTTACTG------GC-AGCCCACA----------TAGTATTCTATATC-CATA-GATAATCTTTTTGT-TTATAGA----AA-T-TATATCGAAC-TTCA-TTTA-CTGTAAAC-ATAAATACCGTATGGGCGTATCTACTGTAAGGGC----TGTT--TT---AAAAACGATATAGTACCga
gi|8 : a--AAACTTCGATATAAAAATGAAA-ACTGTTGT--TATAT---------TA-A-------TGAAA-AT---TGTGTTACA-C----AT-TTATATATAGT--CA-ATA-TA---A-AT-A--T---TA---CCA--TTTC--CTA-TGCT-TTC--AA-AGTTTACCCTAG-ATTT--G----A--------------------------T--------A-CAT---A-AATTC---TTGCGT--GG-C-AAAA-G-TA----C-AGAATTTTTTT-T-T--TTTACA--GAAAG-ATA-Acagtggcggatttagaggg
gi|9 : acatgcgcgtggatttatttacgtaccccatcaacggA-ACT-T-CAAATATAA---------AA-GACATAGGTAAAATAA---TTCAGTACA-C----AG-TT-CA----GTTTCA-TCA-TATATA-ATCA--C---TC---ACA--TGTC--CTA-TGCT-TTCTTTA-TATTTATCTT----TTT--T----GT---A-----TTGAGTATAATCGTAAT--------A-TAT---A-GATTC---TTGCATGAGA-CAAAAA-A-TACAACC-AGAA-----ATAA-T--TTTACCCGGAAAGTAAA-AATGTA-TT
Alignments
lowQualScore : 11 1 1 11 1 1 1 1 1 1 1 11 1 1 333333 1 1 11 1 11 1 555555555555555555 2222 1 22 111111 1 11 22 1 1 333333333333333 222222 1 1 2222 1 33333 2222 11 111 11 7777777777777777777777 222 1 22222 3333333 2222 3333333 11 11 22222222222222222222 1111 111 5555555555555555555555555555555555555555555 111 11 1111 11111 11 22222222222222 11111111 111111111111111
lowQualScore : 1 1 88 5 1 5 77 22 5 5 5 5 5 1 5 5 1 1 88 5 1 5 000000 5 5 1 77 1 3 00 3 6 333333333333333333 4444 5 1 00 6 6 555555 3 7 99 00 7 2 1 2 111111111111111 777777 3 3 3333 3 55555 1111 33 666 1 88 4444444444444444444444 1 111 5 77777 2222222 1 0000 2222222 33 33 8 5 5 2 66 55555555555555555555 4 3333 4 8888 4 0 8888 55 4 4 777 4 4 55 777 777 55 55 4 4 333 4 0 6 4 5555555555555555555555555555555555555555555 4 222 4 777 00 4 4 444 3333 4 11111 4 8 00 66 66 5 5 0 5 66 1 4 777 4 4 6666 55 55 44444444444444 0 8 777 4 88888888 55 4 999999999999999 4 55 4 4 4
lowQualScore : . . .. . . . .. .. . . . . . . . . . . .. . . . ...... . . . .. . . .. . . .................. .... . . .. . . ...... . . .. .. . . . . ............... ...... . . .... . ..... .... .. ... . .. ...................... . ... . ..... ....... . .... ....... .. .. . . . . .. .................... . .... . .... . . .... .. . . ... . . .. ... ... .. .. . . ... . . . . ........................................... . ... . ... .. . . ... .... . ..... . . .. .. .. . . . . .. . . ... . . .... .. .. .............. . . ... . ........ .. . ............... . .. . . .
lowQualScore : 0 0 55 5 0 5 55 00 5 5 5 0 5 0 0 0 0 0 55 0 0 0 000000 5 5 0 55 0 3 33 3 7 000000000000000000 5555 5 0 00 7 7 333333 3 3 33 00 3 0 0 0 333333333333333 000000 3 3 3333 3 00000 2222 88 222 0 33 5555555555555555555555 0 555 0 00000 0000000 0 7777 2222222 22 88 0 7 7 3 99 99999999999999999999 4 3333 0 5555 0 3 5555 55 0 0 000 0 0 55 000 000 55 55 0 0 000 0 5 1 0 7777777777777777777777777777777777777777777 4 222 4 888 66 4 4 999 9999 4 11111 4 9 66 11 44 0 7 6 0 11 9 0 000 0 0 9999 55 55 66666666666666 4 3 888 0 44444444 55 0 888888888888888 0 55 0 0 4
consensus : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACATA-GATAATCTCTNTGTCTTATAGAAG-GAA-TGTATATCTAAC-T--A-CTTA-CTGTAAAC-ATAGA-ATCG-ATTGGCGTATC-----TAAGTGC----TGTT--TTG--ANAAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----AT---A-----ATGTGTAT--------T--------A-TAT---A-AATTC---TTGCAT--GG-C-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACG-AATCTT-G-ATTTCGAA---TCTTGGA-TTTCG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
Reference ( family-120 ) : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACATA-GATAATCTCTNTGTCTTATAGAAG-GAA-TGTATATCTAAC-T--A-CTTA-CTGTAAAC-ATAGA-ATCG-ATTGGCGTATC-----TAAGTGC----TGTT--TTG--ANAAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----AT---A-----ATGTGTAT--------T--------A-TAT---A-AATTC---TTGCAT--GG-C-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACG-AATCTT-G-ATTTCGAA---TCTTGGA-TTTCG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
gi|1 : ATTAGCCACTAATATTACTATT-ATAGTGACAAAATGA--AGTTTTAAATTGAC-TCACATGAGACTAG-TGA-GTCAAGA-TTTCAAGCAGAGATTAAGGCAATTAACTCTAATCAATTAT-TAAGGGAC-TGGACCAGATTTCCTTAGTCCACATGGATAATGGGGG-AAAAAGAAGGGGGGG
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataGC-ACTGGCCAGCC-ACAGAGAACTTTGTTACATT-TCT-TCATATA---TAATCT--ATGTCTT-TAAAAGCGAA-TG-ATATCTAACAT--A-CTTAACTGTAAACCATAGA-ATCG-ATTGGCATATCG----TAAGTGCACTTTGTTTCTTGCCCTAAACGATGTAGAACAGGGGTCCTAACACTgcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctaacacttcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaagggggggAACACTTCAGACTCCGA--TAAA--T-ATA-AAT-GTCA---ATAATTAACTACTAACA-------CAAAC-AACCCGTTGTTA-A-CTTTTATCTTATA----G---CA-TTAATA---ATAT-T--C---T----TTA--T-TCGGCTA-TGCT-TTC--AAATATTTATCCTAGTACTT--TTTCCAT---ACTATCATATGTAC--------TGACTTCATA-TATTAGA-AATTCATTTTACAT--GAAC-AAAACA-TA----C-AGAA-----AT-A-TCCTTAACC--CAAAG-AAtcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|10 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaaggggggggcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctAAA-AT---GTTGTAACA-C----AT-TTTTA----GT--AA-ATA-TA---G-AT-A--C---TA---CCA--TCTC--CTT-TGAT-TTC--AA-AATTTACCATAG-ATTTGAT----ATA--A-----ATGTGTAC--------C--------A-TAT---A-AAATC---TTGGAT--AA-C-AAAT-G-TA----CAAAAA-----AT-ATT--TTTACT--GA-----------------TATTCTACATAATC
gi|11 : AT-TTGAAGT--ATTA--TTTTGA-TTTTT---GTT-GGTCTG----TTT--TGATATT--GA------------TT---ATTT-GAT---TCT--GA-TTTCGTCCATATCTTTGGATTTTTT-GAATTTAGT----AATGGA--T-TCG--AT--GAGTCC-TTCTGGGTCTTTCG
gi|12 : attaactacaggT-TTGAAGT--ATGAATTC-TGATTTTTG---CTT-GG-CTGTATTTTT--GGATA-T--GAATTAAC---AT------ACTTTGAAATTTCTTGGA--GTCG--AA-AT-GTT-GA--TTTC-GAATTTGGTGATTAA-GAACTTGTCGA-AT--GAG--C-TTCTGt
gi|13 : tT-TTGAAGT--ATAAATC--TGA-TTTTGGTGATT-GG-CTG-A--TTT--GATTATTTTGAATC-ACGGAATCTT-G-AATT-GAA---TCTTGGAATTTCG--AAT-T-TTTGGA--TTTT-GAATTTAG-----AA-T----TGTCGA-AT--GAG-CC-TTCTGGG-CTcgg
gi|14 : tGAAGT--ATGAATCCTTTA-TTTTG---ATT-GG-TTG-G--TTT--AGATATT--GA
gi|15 : atacAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-TTG-A--TTT--GTATAAT--GAATC-TGG-AATTTTGG-ATTTCGAA---TATTGAA-TTT----A--------GGA--TCAT-GAATTT--------A-GAA--TGTCGA-ATGAGAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccttatggacttt
gi|16 : ggaA-TTCTG---ATT-GG-TTG-A--TTC--AGATATT--GAATC-TTG-AA-ATT-G---NNNNNN---NNNNNNN-NNNNN--NNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NNNNNN-NN--GAG-CC-TTCTGGG-CTTTCG
gi|17 : TGTTACA-C----TT-TTAAA----GT--CAATTA-TA---A-AT-AGGT---TGGAGCCA--TGTC--CTA-TACT-TTC-------TCTATCT-----TTT--T----AT---t
gi|18 : -TTTCG--AAT---TTTGGA--TTTT-GAATTTAG-----AA--------------T--GAG-CC-TTCTGGG-CTTTCGttttgaggt
gi|2 : ATGAGACACTGGCAT--CTATTTATGTTGACAAA-TGACCAATTTTATTCTGACATC-CATG-GACTAGGTGATGTCCAGACTTTCAAG-AGTGAAT--GG-ACTTAACT-TA------TATATAAGGGACTTGGACCAGTTTT--TAAGT-CACATGGGAACTGGGGG-GAAAAAGA-------AGGGGGGGGGGTATGTACATTTGTACCATTGACTAAAATCGGCTTGACATTATTCACTGCCACTGGCCAGCTCACAGAGAA-TTTGTAATATT-TCTATCA-ATAAGATA--CTCTGTGTTTTA---AAG-GAAATATATATCTAAC-T--AACTTA-CTGTAAAC-AT-----TAG-GTTGGTGTACC-----TAAGTGC----TGTT--TTG--ATAAACGATGTCGTATCGGA--CCTAATATTGACATAATATTGTGT----------------------TTTCAATTTTGC---AATGACAATT-----GACGTCGTGATTGTTATTA----CACT---GA--CCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TTAAA-AA---GTTGTTACT-T----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CGG--TGT---CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----ATTAAA-----ATGTGTA---------A--------A-TAT---ATAATTC---TTGCAT--GA-C-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CAAAG-AAA-AATGTA-TTTATTTTACAGAATCAG
gi|2 : ccAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC-TTG-AATCTT-GGATTTCAAA---TATTGAA-TTTCG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGA-CTTTCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttgaagtatgaattcttgattttgattggctgatttggatattgaatcttgaatcttggatttcaaatattgaatttcgaatattttggattttgaatttagaagaatgtcgaatgagccttctggactttcg
gi|3 : ccatgagacactggcatctatttatgttgacaaatgaccaattttattctgacatccatggactaggtgatgtccagactttcaagagtgaatggacttaacttatatataagggacttggaccagtttttaagtcacatgggaactggggggaaaaagaaggggggggggtatgtacatttgtaccattgactaaaatcggcttgacattattcactgccactggccagctcacagagaatttgtaatatttctatcaataagatactctgtgttttaaaggaaatatatatctaactaacttactgtaaacattaggttggtgtacctaagtgctgttttgataaacgatgtcgtatcggacctaatattgacataatattgtgttttcaattttgcaatgacaattgacgtcgtgattgttattacactgaccgaataaataaaactttcatataaaaattaaaaagttgttacttatttatagtcattataaatactacggtgtctatgctttcaatgtttatcctagattttattaaaatgtgtaaatatataattcttgcatgacaaaaatacagaaatatcttacccaaagaaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAA-ACT-TCAA--TATAA---------AA-A-------TATAA-AA---GTTGTTACAAC----AT-TTAAA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TACT-TTC--TA-TATTTATCTTTG-ACTTGAT----ATA--A-----ATGTGTAT--------T--------ATTATA--A-AATTC---TTGCAT--GG-T-AAAA-A-AAC---C-AGAA-----AT-A-TA-TTTACC--GAAAG--TA-AATGTA-TTTATTTTACATAATCAG
gi|3 : T-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A---TT--GGGTATT--GAATC-AC----NNNN-N-NNNNNNNN---NNNNNNN-NNNNN--NNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NGTCGA-AT--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacttttgaagtatgaattcttgattttgattggctgattgggtattgaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaatgagccttctgggctttc
gi|4 : aaaacttcaatataaaaatataaaagttgttacaacatttaaagtcattataaatactaccatgtcctatactttctatatttatctttgacttgatataaatgtgtattattataaaattcttgcatggtaaaaaaaccagaaatatatttaccgaaagtaaatgtatttattttacataatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaactCA--TATTG---------AA-A-------TAAAA-AA----TTGTTACA-C----AT-TTATA----GT--CA-TTA-T-------T-G--CATTTA---CGAACTGTC--CTATTGCCGTTC--GA-TGTTTATCCTTG-ATT---------T---A-----A---------------T--------A-TAT---A-AATTC---GTGCATG-GG-C-AAAA-GTTA----C-AGAA-----AT-ATT--TTTACC--GAAAG-AAATGATGTACTTTATTTTTCATAATC
gi|4 : AATCTTGAAGT--ATGAATTCT-GA-TTTTG---ATTTGG-CTG-A--TTTCTGGATATT--GAATC-ACG-AATCTT-G-ATTTTGAA---TCTTGAA-TTTCG--A--AT-TTTGGA--TTTTGGAATT---------A-GAA--TGTCGATAT--GAG-CCTTTCAGGG-CTTTCGtgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcttgaagtatgaattctgattttgatttggctgatttctggatattgaatcacgaatcttgattttgaatcttgaatttcgaattttggattttggaattagaatgtcgatatgagcctttcagggctttcg
gi|5 : catattgaaataaaaaattgttacacatttatagtcattattgcatttacgaactgtcctattgccgttcgatgtttatccttgatttaatatataaattcgtgcatgggcaaaagttacagaaatatttttaccgaaagaaatgatgtactttatttttcataatctgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAA-ACT-TCAA--TATAA---------AT-A-------TAAAA-AA---GTTGT-ACA-C----AT-TTAAA----GT--CA-T-A-TA---A-AT-A--C---TA---CCA--TGCC--CTA-TGCT-CTC-----TATTTATCTTTG-ATTTG-T----AT---A-----ATATGAAT--------T--------A-TAT---A-AATTC---TTGCAT--GG-T-TAAA-A--A----C-AGAA-----AT-A-T--TT-ACC--GAAAG-TAA-AATGTA-TTTATTTTACAGAATCAG
gi|5 : T-TTGAAGTTAATGA-TTCTTCA-TTT-G---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACA-AATC-----NNNNNNNN---NNNNNNN-NNNNN--NNNNN-NNNNNN--NNNN-NNNNNNNN-----NN-NNN--NGTCGA-AA--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaactttgaagttaatgattcttcatttgattggctgatttggatattgaatcacaaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaaagagccttctgggctttc
gi|6 : aaacttcaatataaatataaaaaagttgtacacatttaaagtcatataaatactaccatgccctatgctctctatttatctttgatttgtataatatgaattatataaattcttgcatggttaaaaacagaaatatttaccgaaagtaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacTC-----TAAGTGC----TGTT--TTG--AATAACGATGTAGTACCAGA--CCTATTATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTCCTAAAAT-ATAATTTTTTCAACG-------TGTTAGTAAGAGTACT---GA--CCGA-ATATT--T-AAACACT-TTCA--TATAA---------AT-A-------TAAAA-AAT--GTTGTTACT-T----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TACT-TCC--AA-TGTTTATCCTAG-ATTT--T----AT---ATAT--ATGTGTAT--------T--------A-TAT---A-AATTT---TTGCAT--GA-C-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CCAAG-AAA-AATGTA-TT
gi|7 : AGT-CACATG--AACTGGGGGTGGGGGGGGGGGGGGGAGGGGGGGGGGC-----------TA--A--GACTA----CGGCT-GACATAATTTACTG------GC-AGCCCACA----------TAGTATTCTATATC-CATA-GATAATCTTTTTGT-TTATAGA----AA-T-TATATCGAAC-TTCA-TTTA-CTGTAAAC-ATAAATACCGTATGGGCGTATCTACTGTAAGGGC----TGTT--TT---AAAAACGATATAGTACCga
gi|8 : a--AAACTTCGATATAAAAATGAAA-ACTGTTGT--TATAT---------TA-A-------TGAAA-AT---TGTGTTACA-C----AT-TTATATATAGT--CA-ATA-TA---A-AT-A--T---TA---CCA--TTTC--CTA-TGCT-TTC--AA-AGTTTACCCTAG-ATTT--G----A--------------------------T--------A-CAT---A-AATTC---TTGCGT--GG-C-AAAA-G-TA----C-AGAATTTTTTT-T-T--TTTACA--GAAAG-ATA-Acagtggcggatttagaggg
gi|9 : acatgcgcgtggatttatttacgtaccccatcaacggA-ACT-T-CAAATATAA---------AA-GACATAGGTAAAATAA---TTCAGTACA-C----AG-TT-CA----GTTTCA-TCA-TATATA-ATCA--C---TC---ACA--TGTC--CTA-TGCT-TTCTTTA-TATTTATCTT----TTT--T----GT---A-----TTGAGTATAATCGTAAT--------A-TAT---A-GATTC---TTGCATGAGA-CAAAAA-A-TACAACC-AGAA-----ATAA-T--TTTACCCGGAAAGTAAA-AATGTA-TT
blockSeqs : G A . T T . CC TT A . . G T C C . T A . . C . . A T T . A . GG T G TAA . . A CC C C GAGAA C A A AG A C G T AAAGGAAATAT TTCA . . AAAT T TACTG . . G T . TTAGCAAATTTTTATCCGCCTC C TAA . TTTTC . G AGAG AAACT TA AA G C G T AA AAGACATAGG T TG A . . TATA TT A . TAT . C GG ATT GAG AC . T G TTT . A . TGTATTGAGTATAATCGTAAT T A T . GA . A GT CAAC A TTTTT A T A CG TA T C C TA A T GTG T . TATT CT TT ACGGAATCTTG T ATT A NNNNN . G GGTGATTAAGAACT T GA . T .
blockSeqs : . . . . . . C . . A C G . T T . ATAGAAATT TAA . . . . . . . G A . GA A . . . . C . AAA . G . . . . . . . . . . . . . . . . . A . A . GATATAAATGTGTACC . . . . G . . G C . . . T . . A . . . . A . . . . A . . TGGAATTTTGG C . . AATAT . . NNNNNNN . . . . .
blockSeqs : . . . . A GA A . . . . C . AAA . G . . . . . . . . . . . . . . . . . A . T . GATATAAATGTGTATT . . . . . . . A . . . . . . . A . . . . A . . . . G . . TTGAATCTTGG N . . NNNNN . . AGAAGAA . . . . .
blockSeqs : . . . T . AAA . G . . . . . . . . . . . . . . . . . T . T . TATATATATGTGTATT . . . . . . . A . . . . . . . T . . . . A . . . . A . . ACGAATCTTG C . . NNNNN . . NNNNNNN . . . . .
blockSeqs : . . T . ATA . G . . . . . . . . . . . . . . . . . G . T . TATTAAAATGTGTAA . . . . . . . A . . . . . . . A . . . . A . . . . A . . TTGAAATTG N . . AAAT . . NNNNNNN . . . . .
blockSeqs : . . . . ATA . T . . . . . . . . . . . . . . . . . A . A . GTATAATATGAATT . . . . . . . A . . . . . . . A . . . . A . . . . A . . ACNNNNN T . . AATT . . AGAAT . . . . .
blockSeqs : . TAA . T . . . . . . . . . . . . . . . . . A . A . TAAT . . . . . . . G . . . . . . . . . . . A . . . . A . . ACAAATC N . . AAT . . AGAA . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . GAT . . . . . . . A . . . . . . . . . . . . . . A . . AACAT . . . AAT . . AGAA . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . A . . . A . . AGAA . . . .
blockSeqCons : AAA***************** G*** **** ** NATATAAATGTGTAT**************************** *** *** A** ** A*** NCGAATCTTG**** AAT***** ** AGAAA**********
originalCons : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACATA-GATAATCTCTNTGTCTTATAGAAG-GAA-TGTATATCTAAC-T--A-CTTA-CTGTAAAC-ATAGA-ATCG-ATTGGCGTATC-----TAAGTGC----TGTT--TTG--ANAAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTT--T----AT---A-----ATGTGTAT--------T--------A-TAT---A-AATTC---TTGCAT--GG-C-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATC-ACG-AATCTT-G-ATTTCGAA---TCTTGGA-TTTCG--AATAT-TTTGGA--TTTT-GAATTTAG-----AA-GAA--TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
finalCons : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACATA-GATAATCTCTNTGTCTTATAGAAG-GAA-TGTATATCTAAC-T--A-CTTA-CTGTAAAC-ATAGA-ATCG-ATTGGCGTATC-----TAAGTGC----TGTT--TTG--ANAAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAAAAA-----------------TAAAA-AAG---TTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTA-TGCT-TTC--AA-TGTTTATCCTAG-ATTTNATATAAATGTGTAT----------------------------A-TAT---A-AATTC---TTGCAT--GG-C-AAAAA--TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTGA---TTT--GGATATT--GAATCNCGAATCTTG----ATTTCGAA---TCTTGGA-TTTCGAAT-----TTTGGA--TTTT-GAATTTAGAAA----------TGTCGA-AT--GAG-CC-TTCTGGG-CTTTCG
Alignments
lowQualScore : 11 1 1 11 1 1 1 1 1 1 1 11 1 1 333333 1 1 11 1 11 1 555555555555555555 2222 1 22 111111 1 11 22 1 1 1111 333333333 222222 1 1 2222 1 33333 2222 11 111 11 7777777777777777777777 222 1 22222 3333333 2222 3333333 11 11 22222222222222222222 1111 111 3333333333333333333333 1111 11 1111 11111 11 11111 2222222222222222
lowQualScore : 1 1 88 5 1 5 77 22 5 5 5 5 5 1 5 5 1 1 88 5 1 5 000000 5 5 1 77 1 3 00 3 6 333333333333333333 4444 5 1 00 6 6 555555 3 7 99 00 7 2 1 2 7777 222222222 777777 3 3 3333 3 55555 1111 33 666 1 88 4444444444444444444444 1 111 5 77777 2222222 1 0000 2222222 33 33 8 5 5 2 66 55555555555555555555 4 3333 4 8888 4 0 8888 55 4 4 777 4 4 55 777 777 55 55 4 4 333 4 0 8888 1 4 9999 1 8888888888888888888888 7777 4 777 00 4 4 444 3333 4 11111 4 8 00 66 66 5 5 0 5 66 1 4 777 4 4 6666 55 55 33333 4 777777 2 777 55555 4 55 4 55 2222222222222222 777 4 55 4 4 4
lowQualScore : . . .. . . . .. .. . . . . . . . . . . .. . . . ...... . . . .. . . .. . . .................. .... . . .. . . ...... . . .. .. . . . . .... ......... ...... . . .... . ..... .... .. ... . .. ...................... . ... . ..... ....... . .... ....... .. .. . . . . .. .................... . .... . .... . . .... .. . . ... . . .. ... ... .. .. . . ... . . .... . . .... . ...................... .... . ... .. . . ... .... . ..... . . .. .. .. . . . . .. . . ... . . .... .. .. ..... . ...... . ... ..... . .. . .. ................ ... . .. . . .
lowQualScore : 0 0 55 5 0 5 55 00 5 5 5 0 5 0 0 0 0 0 55 0 0 0 000000 5 5 0 55 0 3 33 3 7 000000000000000000 5555 5 0 00 7 7 333333 3 3 33 00 3 0 0 0 3333 000000000 000000 3 3 3333 3 00000 2222 88 222 0 33 5555555555555555555555 0 555 0 00000 0000000 0 7777 2222222 22 88 0 7 7 3 99 99999999999999999999 4 3333 0 5555 0 3 5555 55 0 0 000 0 0 55 000 000 55 55 0 0 000 0 5 5555 3 4 4444 0 3333333333333333333333 2222 4 888 66 4 4 999 9999 4 11111 4 9 66 11 44 0 7 6 0 11 9 0 000 0 0 9999 55 55 77777 4 111111 8 888 11111 0 55 0 55 9999999999999999 000 0 55 0 0 4
consensus : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACATA-GATAATCTCTNTGTCTTATAGAAG-GAA-TGTATATCTAAC-T--A-CTTA-CTGTAAAC-ATAGA-ATCG-ATTGGCGTATC-----TAAGTGC----TGTT--TTG--ANAAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTAT-GCT-TTC--AA-TGTTTATC----CTAG-A----TTTGATATAA--ATGTGT---------A-TATAT----A-AATTC---TTGCAT--G-GC-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATCNC-G-AA-TC-TT-G-ATTTCGAA---TCTTGGA-TTTCGAAT--TTT-GGA--TTTTGAATTT--------AGAA--A-TG---TCGA-AT--GAG-CC-TTCTGGG-CTTTCG
Reference ( family-120 ) : NNATNAGNCACTGGCATTACTATTTATGNTGACAAAATGACCAGTTTTANNCTGACATCACATGAGACTAGGTGATGTCNAGACTTTCAAGCAGNGANTAAGGCANTTAACTCTAATCAATTATATAAGGGACTTGGACCAGNTTTCCTNAGT-CACATGGGAACTGGGGG-GAAAAGGAGGGGGGGAGGGGGGGGGGCATGTACATTTGTACCATTGACTAAAATCGGCTTGACATNATTCACTGC-ACTGGCCAGCCCACAGAGAA-TTTGTAATATT-TCTATCACATA-GATAATCTCTNTGTCTTATAGAAG-GAA-TGTATATCTAAC-T--A-CTTA-CTGTAAAC-ATAGA-ATCG-ATTGGCGTATC-----TAAGTGC----TGTT--TTG--ANAAACGATGTAGTACCGGA--CCTAATATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTNCTAAAATGACAATTTTTTCGACGTCGTGATTGTTANTAAGAGCACT--AGACTCCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TAAAA-AA---GTTGTTACA-C----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTAT-GCT-TTC--AA-TGTTTATC----CTAG-A----TTTNATATAA--ATGTGT---------A-TATAT----A-AATTC---TTGCAT--G-GC-AAAA-A-TA----C-AGAA-----AT-A-T--TTTACC--GAAAG-AAA-AATGTA-TTTATTTTACATAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATCNC-G-AA-TC-TT-G-ATTTCGAA---TCTTGGA-TTTCGAAT--TTT-GGA--TTTTGAATTT--------AGAA--A-TG---TCGA-AT--GAG-CC-TTCTGGG-CTTTCG
gi|1 : ATTAGCCACTAATATTACTATT-ATAGTGACAAAATGA--AGTTTTAAATTGAC-TCACATGAGACTAG-TGA-GTCAAGA-TTTCAAGCAGAGATTAAGGCAATTAACTCTAATCAATTAT-TAAGGGAC-TGGACCAGATTTCCTTAGTCCACATGGATAATGGGGG-AAAAAGAAGGGGGGG
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataGC-ACTGGCCAGCC-ACAGAGAACTTTGTTACATT-TCT-TCATATA---TAATCT--ATGTCTT-TAAAAGCGAA-TG-ATATCTAACAT--A-CTTAACTGTAAACCATAGA-ATCG-ATTGGCATATCG----TAAGTGCACTTTGTTTCTTGCCCTAAACGATGTAGAACAGGGGTCCTAACACTgcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctaacacttcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|1 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaagggggggAACACTTCAGACTCCGA--TAAA--T-ATA-AAT-GTCA---ATAATTAACTACTAACA-------CAAAC-AACCCGTTGTTA-A-CTTTTATCTTATA----G---CA-TTAATA---ATAT-T--C---T----TTA--T-TCGGCTAT-GCT-TTC--AAATATTTATC----CTAGTACTTTTTCCATACTATCATATGTACTGACTTCA-TATATTAG-A-AATTCATTTTACAT--GAAC-AAAACA-TA----C-AGAA-----AT-A-TCCTTAACC--CAAAG-AAtcagactccgataaatataaatgtcaataattaactactaacacaaacaacccgttgttaacttttatcttatagcattaataatattctttattcggctatgctttcaaatatttatcctagtactttttccatactatcatatgtactgacttcatatattagaaattcattttacatgaacaaaacatacagaaatatccttaacccaaagaa
gi|10 : ttagtgtccgcagacatcgaaatcctacaactacactcatcaataggataggcacttcatgctactcctaatatctgctcataacgaagtggacctttaaaataatcacttcaaacataattctctaaccatacatcatgaatataactttaatatattctactcactatgcatcataaccttcagtctctttaccagtttcttgcgaggggcgggagggggcgttgtagactactcttctgcccaatcttcacagttctgaatcacatattatcttcgggtttggtttattctgttctttgtgtttgatttttagtcttttttatctgttagggccaaccgctcgttgtaacataatccacttaaataatatatgacaccccacaactgaagcaagccttttcgcatatcggtaaatcactcgctttagaatgtttcgatcgtgatagataaatgtaaaagtatagcatatccgcagtgtatgttcaaaatcaaaatcgtttcaattgtttaaaatacatgcaattaaagattatatattatctcccatccgtttcaatatctgaatgagggatgggggagggtgggcattggcgtggatcatctacacttagatacgtacaactgttccataaatacaaaaagctttctgaatgacgacgccagataaaagtaacaaaatttgaacgggtcaagggtatatcatagtatatcttgctatatccgattcatgtttattccactcatcaaaaaattgtcaacacaatcgtagcaggggacggcgctcagttaacacaatgccggaaattttaggagctacggaagtggtacccatagtgattccaattaataactttctccacatctcaaattctacataatatggcattaattcaaccattgggtaatatgataacgcatgatcctctgcaggactactccatttcccttttgctaattttaatacatattacgccttgttcacataatacagctttaaaattgcattatctagtttcgttacgatttaatgcatttaccctcttatgacgtcacctgagccaccttgcataattagccactaatattactattatagtgacaaaatgaagttttaaattgactcacatgagactagtgagtcaagatttcaagcagagattaaggcaattaactctaatcaattattaagggactggaccagatttccttagtccacatggataatgggggaaaaagaaggggggggcactggccagccacagagaactttgttacatttcttcatatataatctatgtctttaaaagcgaatgatatctaacatacttaactgtaaaccatagaatcgattggcatatcgtaagtgcactttgtttcttgccctaaacgatgtagaacaggggtcctAAA-AT---GTTGTAACA-C----AT-TTTTA----GT--AA-ATA-TA---G-AT-A--C---TA---CCA--TCTC--CTTT-GAT-TTC--AA-AATTTACC----ATAG-A----TTTGATATAA--ATGTGT---------ACCATAT----A-AAATC---TTGGAT--A-AC-AAAT-G-TA----CAAAAA-----AT-ATT--TTTACT--GA-----------------TATTCTACATAATC
gi|11 : AT-TTGAAGT--ATTA--TTTTGA-TTTTT---GTT-GGTCTG----TTT--TGATATT--GATTATT-T-GA-TT-CT-G-ATTTCG-----TCC---A-TATC------TTT-GGATTTTTTGAATTT--------AGTA--A-TGGATTCG--AT--GAGTCC-TTCTGGGTCTTTCG
gi|12 : attaactacaggT-TTGAAGT--ATGAATTC-TGATTTTTG---CTT-GG-CTGTATTTTT--GGATA-T--GAATT-----AA-CA-T----ACTTTGAAATTTCTTGGA--GTCGAAA--TGT-TGA--TTTCGAATTTGGTGATTAAGAA--CTTG---TCGA-AT--GAG--C-TTCTGt
gi|13 : tT-TTGAAGT--ATAAATC--TGA-TTTTGGTGATT-GG-CTG-A--TTT--GATTATTTTGAATCAC-GGAA-TC-TT-G-AATT-GAA---TCTTGGAATTTCGAAT--TTTTGGA--TTTTGAATTT--------AGAA--T-TG---TCGA-AT--GAG-CC-TTCTGGG-CTcgg
gi|14 : tGAAGT--ATGAATCCTTTA-TTTTG---ATT-GG-TTG-G--TTT--AGATATT--GA
gi|15 : atacAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-TTG-A--TTT--GTATAAT--GAATCTG-G-AA-TT-TTGG-ATTTCGAA---T-----A-TT--GAAT--TTA-GGA--TCATGAATTT--------AG-A--A-TG---TCGA-ATGAGAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccttatggacttt
gi|16 : ggaA-TTCTG---ATT-GG-TTG-A--TTC--AGATATT--GAATCTT-G-AAATT-GN-N-NNNNNNNN---NNNNNNN-NNNNNNNN--NNN-NNN--NNNNNNNNNN--------NNNN--N-NN---NNNN-NN--GAG-CC-TTCTGGG-CTTTCG
gi|17 : TGTTACA-C----TT-TTAAA----GT--CAATTA-TA---A-AT-AGGT---TGGAGCCA--TGTC--CTAT-ACT-TTC-------TCTATC----TTt
gi|18 : -TTTCGAAT--TTT-GGA--TTTTGAATTT--------A--------------GA-AT--GAG-CC-TTCTGGG-CTTTCGtttatttttgaggt
gi|2 : ATGAGACACTGGCAT--CTATTTATGTTGACAAA-TGACCAATTTTATTCTGACATC-CATG-GACTAGGTGATGTCCAGACTTTCAAG-AGTGAAT--GG-ACTTAACT-TA------TATATAAGGGACTTGGACCAGTTTT--TAAGT-CACATGGGAACTGGGGG-GAAAAAGA-------AGGGGGGGGGGTATGTACATTTGTACCATTGACTAAAATCGGCTTGACATTATTCACTGCCACTGGCCAGCTCACAGAGAA-TTTGTAATATT-TCTATCA-ATAAGATA--CTCTGTGTTTTA---AAG-GAAATATATATCTAAC-T--AACTTA-CTGTAAAC-AT-----TAG-GTTGGTGTACC-----TAAGTGC----TGTT--TTG--ATAAACGATGTCGTATCGGA--CCTAATATTGACATAATATTGTGT----------------------TTTCAATTTTGC---AATGACAATT-----GACGTCGTGATTGTTATTA----CACT---GA--CCGA-ATAAA--T-AAA-ACT-TTCA--TATAA---------AA-A-------TTAAA-AA---GTTGTTACT-T----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CGG--TGT---CTAT-GCT-TTC--AA-TGTTTATC----CTAG-A----TTTTATTAAA--ATGTGT---------A-AATAT----ATAATTC---TTGCAT--G-AC-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CAAAG-AAA-AATGTA-TTTATTTTACAGAATCAG
gi|2 : ccAAT-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A--TTT--GGATATT--GAATCTT-G-AA-TC-TT-GGATTTCAAA---TATTGAA-TTTCGAATATTTT-GGA--TTTTGAATTT--------AGAAGAA-TG---TCGA-AT--GAG-CC-TTCTGGA-CTTTCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttgaagtatgaattcttgattttgattggctgatttggatattgaatcttgaatcttggatttcaaatattgaatttcgaatattttggattttgaatttagaagaatgtcgaatgagccttctggactttcg
gi|3 : ccatgagacactggcatctatttatgttgacaaatgaccaattttattctgacatccatggactaggtgatgtccagactttcaagagtgaatggacttaacttatatataagggacttggaccagtttttaagtcacatgggaactggggggaaaaagaaggggggggggtatgtacatttgtaccattgactaaaatcggcttgacattattcactgccactggccagctcacagagaatttgtaatatttctatcaataagatactctgtgttttaaaggaaatatatatctaactaacttactgtaaacattaggttggtgtacctaagtgctgttttgataaacgatgtcgtatcggacctaatattgacataatattgtgttttcaattttgcaatgacaattgacgtcgtgattgttattacactgaccgaataaataaaactttcatataaaaattaaaaagttgttacttatttatagtcattataaatactacggtgtctatgctttcaatgtttatcctagattttattaaaatgtgtaaatatataattcttgcatgacaaaaatacagaaatatcttacccaaagaaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAA-ACT-TCAA--TATAA---------AA-A-------TATAA-AA---GTTGTTACAAC----AT-TTAAA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTAT-ACT-TTC--TA-TATTTATC----TTTG-A----CTTGATATAA--ATGTGT---------A-T-TATTATAA-AATTC---TTGCAT--G-GT-AAAA-A-AAC---C-AGAA-----AT-A-TA-TTTACC--GAAAG--TA-AATGTA-TTTATTTTACATAATCAG
gi|3 : T-TTGAAGT--ATGAATTCTTGA-TTTTG---ATT-GG-CTG-A---TT--GGGTATT--GAATCACNN-NN-NN-NN-N-NNNNNNNN---NNNNNNN-NNNNNNNN--NNN-NNN--NNNNNNNNNN--------NNNN--N-NG---TCGA-AT--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacttttgaagtatgaattcttgattttgattggctgattgggtattgaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaatgagccttctgggctttc
gi|4 : aaaacttcaatataaaaatataaaagttgttacaacatttaaagtcattataaatactaccatgtcctatactttctatatttatctttgacttgatataaatgtgtattattataaaattcttgcatggtaaaaaaaccagaaatatatttaccgaaagtaaatgtatttattttacataatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaactCA--TATTG---------AA-A-------TAAAA-AA----TTGTTACA-C----AT-TTATA----GT--CA-TTA-T-------T-G--CATTTA---CGAACTGTC--CTATTGCCGTTC--GA-TGTTTATC----CTTG-A----TTTAATAT------------------------AT----A-AATTC---GTGCATG-G-GC-AAAA-GTTA----C-AGAA-----AT-ATT--TTTACC--GAAAG-AAATGATGTACTTTATTTTTCATAATC
gi|4 : AATCTTGAAGT--ATGAATTCT-GA-TTTTG---ATTTGG-CTG-A--TTTCTGGATATT--GAATCAC-G-AA-TC-TT-G-ATTTTGAA---TCTTGAA-TTTCGAAT--TTT-GGA--TTTTGGAATT--------AG-A--A-TG---TCGATAT--GAG-CCTTTCAGGG-CTTTCGtgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcttgaagtatgaattctgattttgatttggctgatttctggatattgaatcacgaatcttgattttgaatcttgaatttcgaattttggattttggaattagaatgtcgatatgagcctttcagggctttcg
gi|5 : catattgaaataaaaaattgttacacatttatagtcattattgcatttacgaactgtcctattgccgttcgatgtttatccttgatttaatatataaattcgtgcatgggcaaaagttacagaaatatttttaccgaaagaaatgatgtactttatttttcataatctgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAA-ACT-TCAA--TATAA---------AT-A-------TAAAA-AA---GTTGT-ACA-C----AT-TTAAA----GT--CA-T-A-TA---A-AT-A--C---TA---CCA--TGCC--CTAT-GCT-CTC-----TATTTATC----TTTG-A----TTTG-TATAAT-ATGAAT-----------TATAT----A-AATTC---TTGCAT--G-GT-TAAA-A--A----C-AGAA-----AT-A-T--TT-ACC--GAAAG-TAA-AATGTA-TTTATTTTACAGAATCAG
gi|5 : T-TTGAAGTTAATGA-TTCTTCA-TTT-G---ATT-GG-CTG-A--TTT--GGATATT--GAATCAC-A-AA-TCNNN-N-NNNNNNNN---NNNNNNN-NNNNNNNN--NNN-NNN--NNNNNNNNNN--------NNNN--N-NG---TCGA-AA--GAG-CC-TTCTGGG-CTTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaactttgaagttaatgattcttcatttgattggctgatttggatattgaatcacaaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcgaaagagccttctgggctttc
gi|6 : aaacttcaatataaatataaaaaagttgtacacatttaaagtcatataaatactaccatgccctatgctctctatttatctttgatttgtataatatgaattatataaattcttgcatggttaaaaacagaaatatttaccgaaagtaaaatgtatttattttacagaatcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacTC-----TAAGTGC----TGTT--TTG--AATAACGATGTAGTACCAGA--CCTATTATTGACATAACATTGTGTTTAGCAAATTTTTATCCGCCTCTTTCAATTTTCCTAAAAT-ATAATTTTTTCAACG-------TGTTAGTAAGAGTACT---GA--CCGA-ATATT--T-AAACACT-TTCA--TATAA---------AT-A-------TAAAA-AAT--GTTGTTACT-T----AT-TTATA----GT--CA-TTA-TA---A-AT-A--C---TA---CCA--TGTC--CTAT-ACT-TCC--AA-TGTTTATC----CTAG-A----TTTTATATAT--ATGTGT---------ATTATAT----A-AATTT---TTGCAT--G-AC-AAAA-A-TA----C-AGAA-----AT-A-T--CTTACC--CCAAG-AAA-AATGTA-TT
gi|7 : AGT-CACATG--AACTGGGGGTGGGGGGGGGGGGGGGAGGGGGGGGGGC-----------TA--A--GACTA----CGGCT-GACATAATTTACTG------GC-AGCCCACA----------TAGTATTCTATATC-CATA-GATAATCTTTTTGT-TTATAGAA----A-T-TATATCGAAC-TTCA-TTTA-CTGTAAAC-ATAAATACCGTATGGGCGTATCTACTGTAAGGGC----TGTT--TT---AAAAACGATATAGTACCga
gi|8 : a--AAACTTCGATATAAAAATGAAA-ACTGTTGT--TATAT---------TA-A-------TGAAA-AT---TGTGTTACA-C----AT-TTATATATAGT--CA-ATA-TA---A-AT-A--T---TA---CCA--TTTC--CTAT-GCT-TTC--AA-AGTTTACC----CTAG-A----TTTGATACA------------------------T----A-AATTC---TTGCGT--G-GC-AAAA-G-TA----C-AGAATTTTTTT-T-T--TTTACA--GAAAG-ATA-Acagtggcggatttagaggg
gi|9 : acatgcgcgtggatttatttacgtaccccatcaacggA-ACT-T-CAAATATAA---------AA-GACATAGGTAAAATAA---TTCAGTACA-C----AG-TT-CA----GTTTCA-TCA-TATATA-ATCA--C---TC---ACA--TGTC--CTAT-GCT-TTCTTTA-TATTTATCTTTTTTGT-A----TTGAGTATAA--TCGTA----------A-TATAT----A-GATTC---TTGCATGAG-ACAAAAA-A-TACAACC-AGAA-----ATAA-T--TTTACCCGGAAAGTAAA-AATGTA-TT