lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 33333 22 111 1 3333 3333333 111 666666666666 111111 11 1 11 22 22222222222 111 111 111 1 111 6666666666666666666666666666666666666666 3333333 11 11 1 1 222222222 222 1 444444444444444444 11 1 22 11 11 222 111 1 22222 1 3333 1 2222 111 22222 11 1 1 1 222222 1 1 11 3333333 111 22 3333 33333 11 1 1 7777777 111 22 222 1 1 444 11 1 1 22 111111 4444444444444444444444 44444444444444444444444 1 2222222222222 11 111111 11 1
lowQualScore : 6 9 77777 4 00 44 9 2 777 0 1 3333 3 2 6 2222222 2 777 2 333333333333 777777 2 33 2 0 0 55 0 2 3 22 44444444444 0 22 6 444 555 0 777 0 2 3 444 6666666666666666666666666666666666666666 2 2222222 0 2 4 8 8 3 6 77 22 6 2 3 1 0 2 888888888 888 6 0 222222222222222222 33 2 2 6 3 44 3 33 33 444 777 3 0 8 3 8 00000 8 333 0 2 0 3333 6 8 3 0 9 6 4 1111 777 9 3 00000 4 11 5 9 5 2 5 6 9 6 2 888888 2 8 2 2 2 9 5 5 2 33 4444444 8 555 1 6 6 44 0 0000 1 0 88888 55 5 3 9999999 0 888 7 6 6 2 44 888 0 0 6 555 88 5 3 0 3 3 7 8 33 5 555555 0 7 6666666666666666666666 5 99999999999999999999999 7 5 1 3333333333333 5 2 77 5 22 4 4 4 222222 8 4 66 777 4 00 6 0 66
lowQualScore : . . ..... . .. .. . . ... . . .... . . . ....... . ... . ............ ...... . .. . . . .. . . . .. ........... . .. . ... ... . ... . . . ... ........................................ . ....... . . . . . . . .. .. . . . . . . ......... ... . . .................. .. . . . . .. . .. .. ... ... . . . . . ..... . ... . . . .... . . . . . . . .... ... . . ..... . .. . . . . . . . . . ...... . . . . . . . . . .. ....... . ... . . . .. . .... . . ..... .. . . ....... . ... . . . . .. ... . . . ... .. . . . . . . . .. . ...... . . ...................... . ....................... . . . ............. . . .. . .. . . . ...... . . .. ... . .. . . ..
lowQualScore : 0 5 00000 5 55 00 0 0 555 0 2 0000 0 0 0 5555555 5 555 5 888888888888 888888 5 88 5 8 5 22 8 5 0 55 88888888888 8 88 0 000 888 2 555 0 2 0 000 8888888888888888888888888888888888888888 5 5555555 8 0 2 0 0 0 0 22 22 0 8 2 2 5 0 888888888 888 0 0 000000000000000000 22 5 5 0 2 22 2 88 88 555 555 2 0 0 0 0 00000 0 888 0 0 2 8888 5 8 2 2 2 0 5 2222 555 0 2 00000 4 00 0 0 0 2 0 0 0 0 0 888888 2 8 2 5 2 5 0 0 5 77 3333333 3 777 0 0 0 77 7 3333 0 7 77777 77 0 3 0000000 7 777 3 0 7 5 55 222 0 0 0 000 55 0 0 0 0 7 5 6 11 7 777777 7 0 4444444444444444444444 7 00000000000000000000000 6 7 4 0000000000000 0 5 55 0 99 4 3 4 888888 3 4 11 888 4 66 0 0 99
consensus : AACACTTAATAGAGGGATGATTGCGT---G-AACAACGCATGCAT-GAATGTTGATAAGGACAG---GACT-TTTTN-GACAATTTCCCTNGAAATTGAAATCATAGCATTTG-------TTNACT---TGGC-----CCCCG-TACTGTTGCTGNNGTGTGCTGTGGGGGCTT--GCATGTACAAAAGCCANAGTTCCTGGTCAACACTAGCGAATGACATACTGGGGTTTTGT-TCCTTNTTTAGTCGAAAATGGATATCATAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTG--CATA---------TA------TTTGAA-A--GAA--GG------CACATTCT-------GGATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATANATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTTTTTT-GTC---ATTGCT-AGGTTCCCATC-TTGAAGG-G-A-----AA--AT-A-TTGGGT-GTCATCATCAGGGTCTGAAAAACATATTGC--TTAATTTAG--CTAAATTAACATACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTATAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAA----ATCAA---CATCAGCATTACCTGGGGGAGTATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCANTCAAGCCCTTCCTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGG-TGTGCTTCTCTTTT--TTTCGGCATTATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTA-ACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACAC-AATCC-AA-TAAATCAACAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAGT-TTTTCTGTTCCG-ATGT-GAACGAGAAAAATTCCACACGTCNT-ACCTCNTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGGCGTGACGTAACGT-ACGTAANCAAAT-GN-C-CCCACTATAG----------GGTTAG-----C-TAACACCCGGAA-AG-TAC---GCTGATA-C-GT-TTTCGG-AG-AATN-A-TTGCT-A------TTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
Reference ( gi|1 ) : AATACTTAATAGAGGAATGATTTCGT---T-AACAATGCATGCAA-GAATGTTTATAAGGGCAG---AACT-TTTTT-GTCAATTTCCCTTGAAATTGAAATCGTAGTATTTG-------TTGACT---TGGC-----TCTTATTACTGTTGCTGGCGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCTACACTAACAAATGACATAC-GGGGTTTTGT-TCCTTCTTTAATCGAAAATGGACATTGCAGTCACGCCAGCCAAAACCAGGT---GAC-CTGCTAGCCCTCAAGTGAATTGTGTG--TATA---------TA------T--------------GG------CACATTCT-------GGATGTGCACTAGTAAAGATCGATGCATAAA-CAAGAA-ATAAATTAGTTGAGA-TTTGAACATCTCTGATAGATTTATGCTTTGGTTTTTTC--GTC---ATTGAT-AGGTCCCCATC-TTGAAGG-G-A-----AA--AC-A-TTGGGT-GTCATCATCAGGGTATGAAAAACATATTGC--TTAATTTAG--CTAAATTAATTTTCTGCC---CATTGG-CAATTA-AAACTTTAG-T-----TTTATTGGG-CACATTGT-AGCCTGGGTCTAAATTGTAGCTTGGTGCATGCGCAGGCGAGTAAATCTCGTCAACATGGTCATTGAGTATAAA----ATCAA---CATCATCATTACCTGGAGGAGTATC-----CTCAGGATT--GACGGTTGCTTCCGTGGCCCGGACTGGGATGGGTCGCTCAGCCGAGTTCATCCCGGCCGCCATTCCCGCCTAAATGCCGTTAGTTATTTGCTTTAGTTGTTCATTGGTGAGGCGTGGGCTATCCCCGACC------GTAGTAACGCTCGTGCCCTGTTCGGAATGTTCAGCCTTACTCAAACCCTTCATACGAGTCCCTCTCTTTCGTCCCGTGGTCGGGGGATGTGCTTCTCTTTT--TTTTAGCATAATTACAAATCCCATACACCAAGTTCTTTGGCAAAATGCGAAGTGTAAAAAAATGCAATGTGTAACGA--TA-CTAGTCCGTTATTTACAC-AAT------TAAGTCAATAAATGTAACAAAAGCACTGAGAAAGTCAAATGCAACAGTTTTTTTTATTCCG-ATAT-GAGCAAG---AATTCAACACCTCAT-ACCTCTTTGAATTTCTATGCGCTCACTGCT-GGGGATGC--TTGCACGGTGGGCGTGACGTGACGTGACGTAAGCAAGT-GT-C-CCCACTATAA----------AGTTAG-----T-TAGCACCCGGAA-AG-TAC---GCTGGTA-C-GT-TTTCGG-AG-AATA-A-TTGAT-A------TTTTGCTTTG-ATAAA--CC---G-A--TTTAACTTTG-A--AGTATTAA
gi|2 : AACACTTGATAGAGGGATGATTGCGT---A-AACAACGCATACAT-GAGTGTTGATAAGGACAG---GGCCGTTTTT-GACAATTTCCTTGAAAATTGAAATCATAGCATTTG-------TTCACT---TA-C-----CCCTGTTGTTGTTGCAGAAGTGTGCTATGGGGGCTT--GCATGTACAAAGGCCAGAGTTCCTGATCTACACT---------------GGGGTT--------------AGT--AAAATGGATATCATAGTCACGCCAGCCCCAACCAGGT---GAC-TTGCTAGCCCCCAAGCGAATTGTGTG--CATAATATTTAAATAACGAAAT--------------GG------CACATTCT-------GGATGTGCACCAGTAAAGATCGATACATAAAACAAGAA-ATAAATCAGTCCAGAACTTGAATATCTGTGATAGAATTTTGTTTTGATTTTTTTT-GTC---ATTGCTTAGGTTCCCATC-TTGAAGG-A-AGACAAAA--AT-ACTTGGGTTGTCATCATCAGGTCTTGAAAAA-ATATTGC--TTAATTTAG--CTAAATTAACATACTGCCACATATTGGGCAATTAGAAACTTTGG-T-----TTTATTGGGGCACATAGTTAGCCTAGGTCTAA-CTATAGCTTGGCGCTTGCCTAGGCGAGTAAATCTCGCCAACATGATCATTGAGTACAAA----ATCAA---CATCAGCATTACCTGGGGGAGTATC-----CTCAGGAAT--GACGTTTGCCTCCATGGCCCGGACTGGGATGGGTCGCTCCGCTGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTAATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGCTATCCCCGACC------GTAGTGACGCTCGTGTTCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCCTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGCTGTGCTTCTCTTTT--C---GGCATTAT-GCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCAAAGTA-ACAAGAATGCAATGTGTAGTGA---A-CTAGTCCAGTATGTACAC-AA----------ATC--CAAA-GCAACAAAGGCACCGAGAAAGTCAAATGCAA--GTTTTTT--GTTCCG-ATGT-GAACGAGGAAAATTTCACACGTCCT-ATCTCGTTGAAT--------------------GGGTCTC--TTGCACGGTGGGCGTGACGTAAC----------CAAA--GC-C-CCCACTATAG----------GGT-AA-----C-TAGTACCCGGAA-AG-TACCACGCTAATA-G-GT-TTTAGT-AG-ACTT-A-TTGCT-A------TTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--
gi|6 : gtATACTTAATAGAGGGATGATTACGT---G-AACAATGCATGCAA-GAATGTTGATAAGGGCAG---AACT-TTTTT-GACAATTTCCCCTGAAATTGAAATCGTAGCATTTG-------TTGACT---TGGC-----CCCCAGTACTATTGCTGGCGTGTGTTGTGGGGGCTTTTGCATGTACAAAAGCCATAGGTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGT-TTTTTCTTTAATCGAAAATGGATATCGTAGTCAGGCCAGCCCAAATCAGGT---GAC-CTGCTAGCCCTCAAGTGAATTGTGTG--CATA---------TA------TTTGAATAACGAAATGG------CACATTCT-------GGATATGCACTAGTAAAAATTGATGCATAAA-CAAGAA-Atga
gi|7 : CTGAATAGAGGGATGATTGCGT---G-AACAACGCATGCAT-GAATGTTGATAAGGACAG---GACT-TCTTAAGACAATTTCCCTGGAAATTGAAACCATAGCATTTG-------TTTACT---TGGC-----C------ACTGTTGCTGTGTTGTGCTAAGGGGGCTT--GCATGTACAGAAGTCAGAGTTCCTGATCAACACTAGCAAATGACATACTGGGGTTTTGT-TCCATATTTAATCGAAAATGGATATCATAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGGATTGTGTG--CATA---------T
gi|5 : TAATGTAGGGGTGGTTTTGTGCATGAACAGGATATGCATTG--TGTTTATATCGACAATTTAACT-TATTA---CACTGCCCCTTGTGATTGAAATCATAACATTTAAGGAGCATTGGCTGAGTGGCGGAAGTCTGG--ACGGTTG-----ATGTATTGTA----------CATGTACAAGAGCCATAGCTCTTGGTCAACAACGGCGAATGAAAGAG-AAGAGTAAGCCTCCTTTTTCAGCCAAAACTGAATGTCATAGTCACGCCATCGTA----AGGTTTGGACTCTGCTTGCCCCTAATCTAATAGTGTGAATATA---------TT------T--------------GAATAATTCA-ATCCTGCTCCCGGGATGTGCTGGAGTATAAATAGAAGCATAAA-TGAGAA-AGACATCTGTCCAGT-TTTGTATATCGGCAAT-GACCTTGGCTTTGGTCTCGGG--GGCCAAATTA---AGGTTACCTTCTTTCAAGGTG-A-----AATGAC---TTGGG--ATCGACCCCA---TTTGA-----AT-TTTCAATCAATATAGCCCTAAATTGATGTAATCCC---CAT-------TTA-AAATTTTGGATTTCAATTTATTATG-CACtc
gi|14 : tgcaGCGGATTGTGTG--CATA---------TA------TTTGAAAACGGAAT-GG------TACATTCT-------GGATGTGCACTAGCCAAAATTGATGCATAAG-TAAGAA-ATACATCAGTCTAGA-CTTGAATATCTTTGcatgtgtcccaaatcattg
gi|3 : -CAAAAATATAAATCAGTTCAGA-CTTGAATATCTGTGATAGATTTATGCTTTGATTTTTTC--TTC---ATTAAA-AGGTTCCCATC-TTGAAGG-GAA-----AA--AT-A-TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGC--TTAACTTAG--CTAAATTAATATACTGCC---CATTGG-CAATTA-GAACTTTAG-T-----TTTATTGGG-CACATTGT-AGCCTGGGTATAAAAGGTAGCTTGGTGCTTGTGCAGGCGAGTAAATCTCGCCAACACGGTCATTGAGTACAAA----ATCAA---CATCAGCATTACCTGGAGAAGTATC-----CTCAGAAAT--GACGTTTGCCTCCGTGGCCCGGACTGGGATGGAGCGCTCCGCCGAGTTTATCCCGGCCGCCATTCCCGCCGAAATGGCGTCAGTTATTTGTTTTAGTTGTTCATCGGTGAGGCGTGGGTTATCCACGACC------GTATTAACGCTCGTGCCCTGTTTGGAATGTCCAGCCTTAATCAAACTCTTCATAGGAATCCCTCTCTTTCGTCCTCTGGTCGGGGGATGTGCTTCTCTTTTTCTTTTTGCATAATTACAAATCCCGTATATCAAGTCCTCGTGCAAAATGCGAAGTGTACAAACATGCAATGAGTAACAA--TT-CTAGTCCGGTATGTACAC-AATTCCAAATAAATCAATAAATGTAACAAAAGCACCGAGAAA-TCAAATGCAACAG--TGTTTTGTTCCG-ATAT-GAACAAGA--AATTC-ACACGTCAT-ACCTCTTTGAATTACCATGTGCGCACTGCT-GGGGACGCTTTTGCACGGTGGGT----CGTGAC----CGTAAGCAAGTCGT-C-CCCACTATAA----------GGTTAGCGT--T-TA-CACCCGGAATAGTTAC---GCTTGAA-T-AT-TTTCGG-AGCAATA-A-TTTAT-A------TTTTGCTTTG-ATAAA--TC---G-ATTTTTCACTTCGAA--AGTATTAA
gi|4 : TGATAGATTTTTGCTTTGATTTTTTTTTGTC---ATTGCT-AAGTTCCCATC-TTGAATG-G-A-----AA--ATTA-TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGC--TTAATTTAG--CTAAATTAACATACTGCC---CATTGG-CAATTA-GAATTTTGA-T-----TTTATTGGG-CACATTGT-AGCCTAGATCTAAACTATAGCTTGACGCTTGCCCAGACGCATAAATCTCGCCAACATGATCATTGAGTAGAAA----ATCAA---CATCAGTATTACCTGGGGGAGTATC-----CTCAGGATT--GACGGTTGCTTCCGTGGCCCGGACTGTGATGAGTTGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCTGACCGTGCATGTAGTGACGCTCGTGCCCTATTCGGAATGTACAGCCTCACTCAAGCTCTTCTTAGGAGTTCCTCTCGTTCGTCCCCT-TTCGGGG-------TTCTCTTTT--TTTCGGCATTA-TGCAAATACCATATACCAAGTCCTAGGGCAAAATGCAAAGTA-ACAAGAATGCAATGTGTAACAAACTAGTTAGTCCAGTATGTATACAAATCCAAA-TAAGTCAA-AAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTCTCTGTTCCG-ATGT-GAACGAGAAAAAATCCACACGTCCT-ATTTCGTTTAATTTCCATGTGTGAACTGCT-GGGACCAC--TTGCACGATG----------GACGTGACGTAACCAAAA-GA-C-CCTACTATAG----------GG-TAA-----C-TAATACCCGGAA-AG-TAC--------CA-C-GC--------AG-AGTT-A-TTGCT-A------TTTAGCTTTG-ATAAA--CC---G-A--TTTAACatc
gi|11 : AACTT-AGACTTTGA-T-----TTTATTAGA-CAC------AGCTCAGTGCTAA-----AGCTTGGTGTCCGTCC---CG-GTAAATATTGCCAATATTGCCATTGAAAATAAAGCCCATTAACTGCATTATC-TGGCCTGAAGGCTTACCTTACACTCGTGCCTGAGACGGGTGCCTTCGTc
gi|9 : attatgTC-----CTCAGGATT--GACGGTTGCTTCCGTGGGCTGGACTGGGATGGGTCACTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGCGATGGCGTCAGTTATATGTTTGAGTTGATCATCAGTGAGGCGTGGGTTATCCCCGACC------GTCGTGACGCTCGTGCCCTGTTCAGAATGTCCCGCTTCAATCGGGCCCTTCCTAAGGGGCCCTCTCTTCCATCCCCTGG
gi|8 : AACAGTGTTTT--GTTCCGGATATTGAACAAA---AATTCA-CACGTCATTACCTCTTTGATTTACCATGTGCGCACTGCTTGGGGACGC--T-GCACGGTGGGCGTGACGT----------AAGCAAGT-GT-CACCCACTATAA----------GGTTAGC----T-TACCACCCGGAA-AG-TAC---GTGGAAA-T-AT-TTTCGG-AG-AATA-ATTTAAT-A-------TTTGCTTTG-ATAAATTCA---G-AT-TTTCACTTCGAA--AGTATT
gi|10 : GAATTTCCATGTGCGAACTACT-GGGGACTC--TTGCACGGTGGGTGTGGCGTAAC------CAAA-AA--------CCCACTATTG----------GGTTAGATACATGTAATACCCGGAA-AG-TACCACGCTGTTA-C-GT-TTCAAT-AG-AATTTA-TTGCT-A------TTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-ATGAGTAtaaat
gi|16 : GGATTTCCATGGGCAAACTGCT-AGGGACTC--TTGCACGTTGGGCGTGACGTAACa
gi|13 : gaggggggATGTGCGAACTGTT-GGGG-TCT--TTGCACGGTGGGCGTA-------GT-ACGTAACCAAA--ATAC-CCCACTATAG----------GGTAAC-----T-GAATACCCGGAA-AGACAC---GCTGATA-G-GT-TTTAGT-AG-AGGT-A-TTGCT-A------TTTAGCTTTG-GTAAA--CC---G-A--TTTAACTTCG-A--caaaaactccactat
gi|12 : GTGACGTAACTAAAT-GA-C-CACAA-ATAATCAAGAAGAGAAATGG-----C-CAGCAGCTGGAA-AT-TAC---CTTCATAAC-GTATCTCAGTAA-AATATC-TTGAT-ACATGTATCTAGCTTTGGAAAAA--TC---G-A--CTTAACTTCG-A--GGAGTTAtgagt
gi|15 : gctttttgtacaatgattGGTA-CTGT-TACCGG-AG-AATA-A-TTTATTA------TTTTGCA--G-ATAAA--CTTGAGCA--TTTAACTTCG-A--ATTGTTAAga
gi|17 : -A-TTGCT-A------TTTAGCTTTG-ATAAA--CC---C-A--TTTAACTTCG-A--atcctaat
Alignments
lowQualScore : 1111 111 11 2222222 111 44444444444 11 1 111 77777777777 2222222 11 111 2222222 11 11 11 11 111 11111 1111 111 111 111 11111 222222 33 11 1 2 22222 5555555555 111 2 5555555555 1111 2222222 22222 111111
lowQualScore : 0 7777 1 99 0 444 8 66 1 6666666 1 444 55555555555 1 77 11 1 1 3 4 0 0 66 1 3 0 444 8 6 0 99999999999 6666666 1 6 6 1 8 0 1 8 77 11 999 8 2222222 8 99 88 1 0 55 0 11 11 444 0 8 6 6 66666 6 3 6 6666 0 5 1 0 444 222 444 66666 1 99 333333 1 3 22 3 33 0 4 5 0 0 44444 2222222222 000 3 2 0 999 3 8 8 6 3 0 1 5 1 8 1 1 3 5 0 1 66 4 3 1 0 9999999999 66 7777 4 6 1111111 5 5 00000 5 1 888 4 1 55 4 4 111111 4 777 4 4 3 4 55 777 4 99 8 66
lowQualScore : . .... . .. . ... . .. . ....... . ... ........... . .. .. . . . . . . .. . . . ... . . . ........... ....... . . . . . . . . .. .. ... . ....... . .. .. . . .. . .. .. ... . . . . ..... . . . .... . . . . ... ... ... ..... . .. ...... . . .. . .. . . . . . ..... .......... ... . . . ... . . . . . . . . . . . . . . . . .. . . . . .......... .. .... . . ....... . . ..... . . ... . . .. . . ...... . ... . . . . .. ... . .. . ..
lowQualScore : 7 0000 4 44 8 000 0 88 0 0000000 0 000 88888888888 0 66 00 0 4 8 6 6 8 66 0 8 8 000 0 7 8 22222222222 0000000 4 7 7 0 0 8 4 0 44 00 000 0 0000000 0 00 88 4 8 66 8 00 00 000 8 0 7 7 77777 7 2 7 2222 8 6 4 8 000 444 000 77777 0 22 000000 0 2 55 2 88 2 0 5 2 0 55555 2222222222 888 2 5 8 444 2 0 0 4 8 8 0 0 0 0 0 9 0 0 5 0 11 4 6 1 7 8888888888 11 7777 4 5 4444444 0 0 44444 0 0 000 4 1 66 4 0 000000 0 000 0 1 7 0 55 000 0 55 9 11
consensus : AATACTTAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---AACT-TTTTT-GACAATTTCCCTTGAAATTGAAATCGTAGCATTTG-------TTGACT---TGGCC----CCT-GTTACTGTTGCTGGNGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTCCTTCTTTAATCGAAAATGGATATCGTAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTGCATA-TATTTGAAT-AAC-GAAATGGCACATTCTG-------GATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATAAATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTT-TTCTGTC--ATTGNT-AGGTTCCCATC-TTGAAGGG-A-----AAA-TA--TTGGGT-GTCATCATCAGGGTCTGAAAAACATATTGC--TTAATTTAG--CTAAATTAACGTACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTGTAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCNTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGATGTGCTTCTCTTTT--TTTCGGCATNATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTGTACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACAC-AATCC--AATAAGTCAATAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG-TTTTT-TGTTCCG-ATAT-GAACGAGAAAAATTCCACACGTCAT-ACCTCTTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGG-CGTGACGTAAC---ACGTAA-CA--AAT-GNC-CCCACTATAGGGTTAG---C---T-AGCACCCGGAA-AG-T---ACGC-TGATA-C-GT-TTTCGG-AG-AA-TN-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
Reference ( family-11972 ) : AACACTTAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---GACT-TTTTN-GACAATTTCCCTNGAAATTGAAATCATAGCATTTG-------TTNACT---TGGCC----CCC-GT-ACTGTTGCTGNNGTGTGCTGTGGGGGCTT--GCATGTACAAAAGCCANAGTTCCTGGTCAACACTAGCGAATGACATACTGGGGTTTTGTTCCTTNTTTAGTCGAAAATGGATATCATAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTGCATA-TATTTGAA--A---GAA--GGCACATTCTG-------GATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATANATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTT-TTTTGTC--ATTGCT-AGGTTCCCATC-TTGAAGGG-A-----AAA-TA--TTGGGT-GTCATCATCAGGGTCTGAAAAACATATTGC--TTAATTTAG--CTAAATTAACATACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTATAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCANTCAAGCCCTTCCTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGG-TGTGCTTCTCTTTT--TTTCGGCATTATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTA-ACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACAC-AATCC--AATAAATCAACAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG-TTTTTCTGTTCCG-ATGT-GAACGAGAAAAATTCCACACGTCNT-ACCTCNTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGG-CGTGACGTAACGT-ACGTAANCA--AAT-GNC-CCCACTATAGGGTTAG---C---T-AACACCCGGAA-AG-T---ACGC-TGATA-C-GT-TTTCGG-AG-AA-TN-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
gi|1 : AATACTTAATAGAGGAATGATT----TCGTTAACAATGCATGCAA-GAATGTTTATAAGGGCAG---AACT-TTTTT-GTCAATTTCCCTTGAAATTGAAATCGTAGTATTTG-------TTGACT---TGGCT----CTT-ATTACTGTTGCTGGCGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCTACACTAACAAATGACATAC-GGGGTTTTGTTCCTTCTTTAATCGAAAATGGACATTGCAGTCACGCCAGCCAAAACCAGGT---GAC-CTGCTAGCCCTCAAGTGAATTGTGTGTATA-TAT----------------GGCACATTCTG-------GATGTGCACTAGTAAAGATCGATGCATAAA-CAAGAA-ATAAATTAGTTGAGA-TTTGAACATCTCTGATAGATTTATGCTTTGGTTTT-TTC-GTC--ATTGAT-AGGTCCCCATC-TTGAAGGG-A-----AAA-CA--TTGGGT-GTCATCATCAGGGTATGAAAAACATATTGC--TTAATTTAG--CTAAATTAATTTTCTGCC---CATTGG-CAATTA-AAACTTTAG-T-----TTTATTGGG-CACATTGT-AGCCTGGGTCTAAATTGTAGCTTGGTGCATGCGCAGGCGAGTAAATCTCGTCAACATGGTCATTGAGTATAAAATCAACATCA---TCATTACCTGG--AGGAG---TATC-----CTCAGGATT--GACGGTTGCTTCCGTGGCCCGGACTGGGATGGGTCGCTCAGCCGAGTTCATCCCGGCCGCCATTCCCGCCTAAATGCCGTTAGTTATTTGCTTTAGTTGTTCATTGGTGAGGCGTGGGCTATCCCCGACC------GTAGTAACGCTCGTGCCCTGTTCGGAATGTTCAGCCTTACTCAAACCCTTCATACGAGTCCCTCTCTTTCGTCCCGTGGTCGGGGGATGTGCTTCTCTTTT--TTTTAGCATAATTACAAATCCCATACACCAAGTTCTTTGGCAAAATGCGAAGTGTAAAAAAATGCAATGTGTAACGA--TA-CTAGTCCGTTATTTACAC-AAT------TAAGTCAATAAATGTAACAAAAGCACTGAGAAAGTCAAATGCAACAGTTTTTTTTATTCCG-ATAT-GAGCAAG---AATTCAACACCTCAT-ACCTCTTTGAATTTCTATGCGCTCACTGCT-GGGGATGC--TTGCACGGTGGG-CGTGACGTGACGTGACGTAAGCA--AGT-GTC-CCCACTATAAAGTTAG---T---T-AGCACCCGGAA-AG-T---ACGC-TGGTA-C-GT-TTTCGG-AG-AA-TA-----A-T---T-GATATTTTGCTTTG-ATAAA--CC---G-A--TTTAACTTTG-A--AGTATTAA
gi|10 : GAATTTCCATGTGCGAACTACT-GGGGACTC--TTGCACGGTGGG-TGTGGCGTAAC----------CA--AA---AA-CCCACTATTGGGTTAGATACATGT-AATACCCGGAA-AG-TACCACGC-TGTTA-C-GT-TTCAAT-AG-AATTT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-ATGAGTA
gi|11 : AACTT-AGACTTTGA-T-----TTTATTAGA-CAC------AGCTCAGTGCTAA-----AGCTTGGTGTCCGTCC---CG-GTAAATATTGCCAATATTGCCATTGAAAATAAAGCC--CATTAACTGCATTATCTGGCCTGAAGGCTTACCTTACACTCGTGCCTGAGACGGGTGCCTTCGTa
gi|12 : attatg--TTGTACAATGAT-TGTGACGTAAC-T-AAATGACCACAAAT-AAT-CA-AGAAGAGAAATGG---C---C-AGCAGCTGGAA-AT-T---ACCT-TCATAAC-GTATCTCAGTAA-AA-TATCTTGA-TACAT-G-TATCTAGCTTTGGAAAAA--TC---G-A--CTTAACTTCG-A--GGAGTTA
gi|13 : gctttATGTGCGAACTGTT-GGGGTCT---TTGCACGGTGGG-CGTA-------GT-ACGTAACCA--AAA-TAC-CCCACTATAGGGT-AA---C---TGAATACCCGGAA-AGAC---ACGC-TGATA-G-GT-TTTAGT-AG-AG-GT-----A-T---T-GCTATTTAGCTTTG-GTAAA--CC---G-A--TTTAACTTCG-A--ga
gi|14 : GCGGATTGTGTGCATA-TATTTGAA--AACGGAAT-GGTACATTCTG-------GATGTGCACTAGCCAAAATTGATGCATAAG-TAAGAA-ATACATCAGTCTAGA-CTTGAATATCTTTGtgagt
gi|15 : GGTA-CTGT-TACCGG-AG-AA-TA-----A-T---TTATTATTTTGCA--G-ATAAA--CTTGAGCA--TTTAACTTCG-A--ATTGTTAA
gi|16 : GGATTTCCATGGGCAAACTGCT-AGGGACTC--TTGCACGTTGGG-CGTGACGTAAC----------CA--AA--AAC-TCCACTATatcctaat
gi|17 : gagggggg-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---C-A--TTTAACTTCG-A--
gi|2 : tAACACTTGATAGAGGGATGATT----GCGTAAACAACGCATACAT-GAGTGTTGATAAGGACAG---GGCCGTTTTT-GACAATTTCCTTGAAAATTGAAATCATAGCATTTG-------TTCACT---TA-CC----CCT-GTTGTTGTTGCAGAAGTGTGCTATGGGGGCTT--GCATGTACAAAGGCCAGAGTTCCTGATCTACACT---------------GGGGTT-------------AGT--AAAATGGATATCATAGTCACGCCAGCCCCAACCAGGT---GAC-TTGCTAGCCCCCAAGCGAATTGTGTGCATAATATTTAAATAAC--GAAATGGCACATTCTG-------GATGTGCACCAGTAAAGATCGATACATAAAACAAGAA-ATAAATCAGTCCAGAACTTGAATATCTGTGATAGAATTTTGTTTTGATTTT-TTTTGTC--ATTGCTTAGGTTCCCATC-TTGAAGGA-AGACAAAAA-TAC-TTGGGTTGTCATCATCAGGTCTTGAAAAA-ATATTGC--TTAATTTAG--CTAAATTAACATACTGCCACATATTGGGCAATTAGAAACTTTGG-T-----TTTATTGGGGCACATAGTTAGCCTAGGTCTAA-CTATAGCTTGGCGCTTGCCTAGGCGAGTAAATCTCGCCAACATGATCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGAAT--GACGTTTGCCTCCATGGCCCGGACTGGGATGGGTCGCTCCGCTGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTAATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGCTATCCCCGACC------GTAGTGACGCTCGTGTTCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCCTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGCTGTGCTTCTC---T--TTTCGGCATTA-TGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCAAAGTA-ACAAGAATGCAATGTGTAGTGA---A-CTAGTCCAGTATGTACAC-----------AAATC--CAAA-GCAACAAAGGCACCGAGAAAGTCAAATGCA--AG-TTTTT-TGTTCCG-ATGT-GAACGAGGAAAATTTCACACGTCCT-ATCTCGTTGAAT--------------------GGGTCTC--TTGCACGGTGGG-CGTGACGTAAC----------CA--AA--GCC-CCCACTATAGGG-TAA---C---T-AGTACCCGGAA-AG-TACCACGC-TAATA-G-GT-TTTAGT-AG-AC-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--ta
gi|3 : gt-CAAAAATATAAATCAGTTCAGA-CTTGAATATCTGTGATAGATTTATGCTTTGATTTT-TTCT-TC--ATTAAA-AGGTTCCCATC-TTGAAGGGAA-----AAA-TA--TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGC--TTAACTTAG--CTAAATTAATATACTGCC---CATTGG-CAATTA-GAACTTTAG-T-----TTTATTGGG-CACATTGT-AGCCTGGGTATAAAAGGTAGCTTGGTGCTTGTGCAGGCGAGTAAATCTCGCCAACACGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--AGAAG---TATC-----CTCAGAAAT--GACGTTTGCCTCCGTGGCCCGGACTGGGATGGAGCGCTCCGCCGAGTTTATCCCGGCCGCCATTCCCGCCGAAATGGCGTCAGTTATTTGTTTTAGTTGTTCATCGGTGAGGCGTGGGTTATCCACGACC------GTATTAACGCTCGTGCCCTGTTTGGAATGTCCAGCCTTAATCAAACTCTTCATAGGAATCCCTCTCTTTCGTCCTCTGGTCGGGGGATGTGCTTCTCTTTTTCTTTTTGCATAATTACAAATCCCGTATATCAAGTCCTCGTGCAAAATGCGAAGTGTACAAACATGCAATGAGTAACAA--TT-CTAGTCCGGTATGTACAC-AATTCCAAATAAATCAATAAATGTAACAAAAGCACCGAGAAA-TCAAATGCAACAG-TGTTT-TGTTCCG-ATAT-GAACAAGAAA---TTCACACGTCAT-ACCTCTTTGAATTACCATGTGCGCACTGCT-GGGGACGCTTTTGCACGGTGGGTCGTGAC---------CGTAAGCA--AGTCGTC-CCCACTATAAGGTTAG---CGT-T-TACACCCGGAATAGTT---ACGCTTGA-A-T-AT-TTTCGG-AGCAA-TA-----A-T---T-TATATTTTGCTTTG-ATAAA--TC---G-ATTTTTCACTTCGAA--AGTATTAAtga
gi|4 : TGATAGATTTTTGCTTTGATTTTTTTTTGTC--ATTGCT-AAGTTCCCATC-TTGAATGG-A-----AAATTA--TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGC--TTAATTTAG--CTAAATTAACATACTGCC---CATTGG-CAATTA-GAATTTTGA-T-----TTTATTGGG-CACATTGT-AGCCTAGATCTAAACTATAGCTTGACGCTTGCCCAGACGCATAAATCTCGCCAACATGATCATTGAGTAGAAAATCAACATCA---GTATTACCTGG--GGGAG---TATC-----CTCAGGATT--GACGGTTGCTTCCGTGGCCCGGACTGTGATGAGTTGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCTGACCGTGCATGTAGTGACGCTCGTGCCCTATTCGGAATGTACAGCCTCACTCAAGCTCTTCTTAGGAGTTCCTCTCGTTCGTCCCCT-TTCGGGG-------TTCTCTTTT--TTTCGGCATTA-TGCAAATACCATATACCAAGTCCTAGGGCAAAATGCAAAGTA-ACAAGAATGCAATGTGTAACAAACTAGTTAGTCCAGTATGTATACAAATCCA-AATAAGTCAA-AAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTCTCTGTTCCG-ATGT-GAACGAGAAAAAATCCACACGTCCT-ATTTCGTTTAATTTCCATGTGTGAACTGCT-GGGACCAC--TTGCACGATGGA-CGTGACGTAAC----------CA--AAA-GAC-CCTACTATAGGG-TAA---C---T-AATACCCGGAA-AG-T---AC------CA-C-GC--------AG-AG-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACatc
gi|5 : TAATGTAGGGGTGGTTTTGTGCATGAACAGGATATGCATTG--TGTTTATATCGACAATTTAACT-TATT---ACACTGCCCCTTGTGATTGAAATCATAACATTTAAGGAGCATTGGCTGAGTGGCGGAAGTCT-GG-ACGGTTG-----ATGTATTGTA----------CATGTACAAGAGCCATAGCTCTTGGTCAACAACGGCGAATGAAAGAGAAGAGTAAGCCTCCTTTTTCAGCCAAAACTGAATGTCATAGTCACGCCATCGTAA----GGTTTGGACTCTGCTTGCCCCTAATCTAATAGTGTGAATA-TATTTGAA------TAA--TTCA-ATCCTGCTCCCGGGATGTGCTGGAGTATAAATAGAAGCATAAA-TGAGAA-AGACATCTGTCCAGT-TTTGTATATCGGCAAT-GACCTTGGCTTTGGTCTC-GGGGGCCAAATTA---AGGTTACCTTCTTTCAAGGT-G-----AAA-TGACTTGGG--ATCGACCCCA---TTTGA-----AT-TTTCAATCAATATAGCCCTAAATTGATGTAATCCC---CAT-------TTA-AAATTTTGGATTTCAATTTATTATG-CACCATGT-GTCCCAAATCc
gi|6 : tgcaATACTTAATAGAGGGATGATT----ACGTGAACAATGCATGCAA-GAATGTTGATAAGGGCAG---AACT-TTTTT-GACAATTTCCCCTGAAATTGAAATCGTAGCATTTG-------TTGACT---TGGCC----CCCAGT-ACTATTGCTGGCGTGTGTTGTGGGGGCTTTTGCATGTACAAAAGCCATAGGTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTTTTTCTTTAATCGAAAATGGATATCGTAGTCAGGCCAGCCCAAATCAGGT---GAC-CTGCTAGCCCTCAAGTGAATTGTGTGCATA-TATTTGAAT-AAC-GAAATGGCACATTCTG-------GATATGCACTAGTAAAAATTGATGCATAAA-CAAGAA-Aattg
gi|7 : CTGAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---GACT-TCTTAAGACAATTTCCCTGGAAATTGAAACCATAGCATTTG-------TTTACT---TGGCC-----------ACTGTTGCTGTGTTGTGCTAAGGGGGCTT--GCATGTACAGAAGTCAGAGTTCCTGATCAACACTAGCAAATGACATACTGGGGTTTTGTTCCATATTTAATCGAAAATGGATATCATAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGGATTGTGTGCATA-T
gi|8 : AACAG-TGTTT-TGTTCCGGATATTGAAC---AAAAATTC-ACACGTCATTACCTCTTTGATTTACCATGTGCGCACTGCTTGGGGACGC--T-GCACGGTGGG-CGTG----------ACGTAAGCA--AGT-GTCACCCACTATAAGGTTAG---CT--T-ACCACCCGGAA-AG-T---ACGT-GGAAA-T-AT-TTTCGG-AG-AA-TA-----ATT---T-AATATTT-GCTTTG-ATAAATTCA---G-AT-TTTCACTTCGAA--AGTATTtc
gi|9 : TC-----CTCAGGATT--GACGGTTGCTTCCGTGGGCTGGACTGGGATGGGTCACTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGCGATGGCGTCAGTTATATGTTTGAGTTGATCATCAGTGAGGCGTGGGTTATCCCCGACC------GTCGTGACGCTCGTGCCCTGTTCAGAATGTCCCGCTTCAATCGGGCCCTTCCTAAGGGGCCCTCTCTTCCATCCCCTGGtaaat
Alignments
lowQualScore : 1111 111 11 2222222 111 22222222222 11 1 111 111 11 111 2222222 2222 11 11 11 111 11111 1111 111 111 111 11111 222222 11 1 1 22222 2 2222 11 7777777777 1111 1111111 2222222 22222 111111
lowQualScore : 7777 1 99 0 444 8 44 0 6666666 444 77777777777 1 77 6 11 1 3 0 0 66 1 3 0 444 8 6 0 5 3 1 6 6 0 8 0 1 555 11 777 8 2222222 1111 88 1 0 55 0 11 11 4 444 0 8 6 6 66666 6 3 6 5555 0 5 1 0 444 222 444 66666 1 99 333333 1 55 3 33 0 1 5 0 5 44444 0 6666 3 33 9 2 0 11 0 8 8 6 3 0 1 5 0 8 0 1 3 5 0 1 66 4 0 0000000000 66 5555 4 66 4444444 6 3333333 5 5 5 00000 5 1 888 4 1 55 4 4 111111 4 777 4 4 3 4 55 777 4 99 8 66
lowQualScore : .... . .. . ... . .. . ....... ... ........... . .. . .. . . . . .. . . . ... . . . . . . . . . . . . ... .. ... . ....... .... .. . . .. . .. .. . ... . . . . ..... . . . .... . . . . ... ... ... ..... . .. ...... . .. . .. . . . . . ..... . .... . .. . . . .. . . . . . . . . . . . . . . . . .. . . .......... .. .... . .. ....... . ....... . . . ..... . . ... . . .. . . ...... . ... . . . . .. ... . .. . ..
lowQualScore : 0000 4 44 8 000 0 00 6 0000000 000 88888888888 0 00 0 00 4 8 6 8 66 0 2 8 000 0 7 8 6 6 4 7 7 6 0 8 4 000 00 888 0 0000000 0000 88 4 8 66 8 00 00 6 000 8 0 7 7 77777 7 2 7 8888 8 6 4 8 000 444 000 77777 0 22 000000 0 55 2 88 2 0 5 2 5 55555 0 5555 2 55 2 5 8 00 6 0 0 4 8 8 0 0 6 0 6 9 0 0 5 0 11 4 8 9999999999 11 8888 4 11 4444444 5 2222222 0 4 0 44444 0 0 000 4 1 66 4 0 000000 0 000 0 1 7 0 55 000 0 55 9 11
consensus : AATACTTAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---AACT-TTTTT-GACAATTTCCCTTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCTGTTACTGTTGCTGGNGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTCCTTCTTTAATCGAAAATGGATATCGTAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATAAATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTTTTCT-GTC--ATTGNT-AGGTTCCCATC-TTGAAGGG-A-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAACATATTGC--TTAATTTAG--CTAAATTAACGTACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTGTAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCNTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGATGTGCTTCTCTTTT--TTTCGGCATNATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTGTACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACACAAATCC--AATAAGTCAATAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTTTTTGTTCCG-ATAT-GAACGAGAAAAATTCCACACGTCAT-ACCTCTTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGG-CGTGACGTAAC-------A--C--AAAT-GNC-CCCA--CTAT-------AGGGTTAG---C---T-AGCACCCGGAA-AG-T---ACGC-TGATA-C-GT-TTTCGG-AG-AA-TN-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
Reference ( family-11972 ) : AATACTTAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---AACT-TTTTT-GACAATTTCCCTTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCTGTTACTGTTGCTGGNGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTCCTTCTTTAATCGAAAATGGATATCGTAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATAAATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTTTTCT-GTC--ATTGNT-AGGTTCCCATC-TTGAAGGG-A-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAACATATTGC--TTAATTTAG--CTAAATTAACGTACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTGTAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCNTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGATGTGCTTCTCTTTT--TTTCGGCATNATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTGTACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACAC-AATCC--AATAAGTCAATAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTTTTTGTTCCG-ATAT-GAACGAGAAAAATTCCACACGTCAT-ACCTCTTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGG-CGTGACGTAAC---ACGTAA-C--AAAT-GNC-CCCA--CTAT-------AGGGTTAG---C---T-AGCACCCGGAA-AG-T---ACGC-TGATA-C-GT-TTTCGG-AG-AA-TN-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
gi|1 : AATACTTAATAGAGGAATGATT----TCGTTAACAATGCATGCAA-GAATGTTTATAAGGGCAG---AACT-TTTTT-GTCAATTTCCCTTGAAATTGAAATCGTAGTATTT-------GTTGACT---TGGC----TCTTATTACTGTTGCTGGCGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCTACACTAACAAATGACATAC-GGGGTTTTGTTCCTTCTTTAATCGAAAATGGACATTGCAGTCACGCCAGCCAAAACCAGGT---GAC-CTGCTAGCCCTCAAGTGAATTGTGTGTATA-TAT--------------GGCACATTCTGGATGTGCACTAGTAAAGATCGATGCATAAA-CAAGAA-ATAAATTAGTTGAGA-TTTGAACATCTCTGATAGATTTATGCTTTGGTTTTTTC--GTC--ATTGAT-AGGTCCCCATC-TTGAAGGG-A-----AAAC-A--TTGGGT-GTCATCATCAGGGTATGAAAAACATATTGC--TTAATTTAG--CTAAATTAATTTTCTGCC---CATTGG-CAATTA-AAACTTTAG-T-----TTTATTGGG-CACATTGT-AGCCTGGGTCTAAATTGTAGCTTGGTGCATGCGCAGGCGAGTAAATCTCGTCAACATGGTCATTGAGTATAAAATCAACATCA---TCATTACCTGG--AGGAG---TATC-----CTCAGGATT--GACGGTTGCTTCCGTGGCCCGGACTGGGATGGGTCGCTCAGCCGAGTTCATCCCGGCCGCCATTCCCGCCTAAATGCCGTTAGTTATTTGCTTTAGTTGTTCATTGGTGAGGCGTGGGCTATCCCCGACC------GTAGTAACGCTCGTGCCCTGTTCGGAATGTTCAGCCTTACTCAAACCCTTCATACGAGTCCCTCTCTTTCGTCCCGTGGTCGGGGGATGTGCTTCTCTTTT--TTTTAGCATAATTACAAATCCCATACACCAAGTTCTTTGGCAAAATGCGAAGTGTAAAAAAATGCAATGTGTAACGA--TA-CTAGTCCGTTATTTACAC-AAT------TAAGTCAATAAATGTAACAAAAGCACTGAGAAAGTCAAATGCAACAGTTTTTTTTATTCCG-ATAT-GAGCAAG---AATTCAACACCTCAT-ACCTCTTTGAATTTCTATGCGCTCACTGCT-GGGGATGC--TTGCACGGTGGG-CGTGACGTGACGTGACGTAAGC--AAGT-GTC-CCCA--CTAT-------AAAGTTAG---T---T-AGCACCCGGAA-AG-T---ACGC-TGGTA-C-GT-TTTCGG-AG-AA-TA-----A-T---T-GATATTTTGCTTTG-ATAAA--CC---G-A--TTTAACTTTG-A--AGTATTAA
gi|10 : GAATTTCCATGTGCGAACTACT-GGGGACTC--TTGCACGGTGGG-TGTGGCGTAAC----------C--AAA---AA-CCCA--CTAT-------TGGGTTAGATACATGT-AATACCCGGAA-AG-TACCACGC-TGTTA-C-GT-TTCAAT-AG-AATTT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-ATGAGTA
gi|11 : AACTT-AGACTTTGA-T-----TTTATTAGA-CAC------AGCTCAGTGCTAA-----AGCTTGGTGTCCGTCC---CG-GTAAATATTGCCAATATTGCCATTGAAAATAAAGCC--CATTAACTGCATTATCTGGCCTGAAGGCTTACCTTACACTCGTGCCTGAGACGGGTGCCTTCGTa
gi|12 : attatg--TTGTACAATGAT-TGTGACGTAAC----------T--AAAT-GAC-CACAAATAATCAAGAAGAGAAATGG---C---C-AGCAGCTGGAA-AT-T---ACCT-TCATAAC-GTATCTCAGTAA-AA-TATCTTGA-TACAT-G-TATCTAGCTTTGGAAAAA--TC---G-A--CTTAACTTCG-A--GGAGTTA
gi|13 : gctttATGTGCGAACTGTT-GGGGTCT---TTGCACGGTGGG-CGT-----AGT---ACGTAA-CCAAAAT--AC-CCCA--CTAT-------AGGGT-AA---C---TGAATACCCGGAA-AGAC---ACGC-TGATA-G-GT-TTTAGT-AG-AG-GT-----A-T---T-GCTATTTAGCTTTG-GTAAA--CC---G-A--TTTAACTTCG-A--ga
gi|14 : GCGGATTGTGTGCATA-TATTTGAA-AACGGAATGGTACATTCTGGATGTGCACTAGCCAAAATTGATGCATAAG-TAAGAA-ATACATCAGTCTAGA-CTTGAATATCTTTGtgagt
gi|15 : GGTA-CTGT-TACCGG-AG-AA-TA-----A-T---TTATTATTTTGCA--G-ATAAA--CTTGAGCA--TTTAACTTCG-A--ATTGTTAA
gi|16 : GGATTTCCATGGGCAAACTGCT-AGGGACTC--TTGCACGTTGGG-CGTGACGTAAC----------C--AAA--AAC-TCCA--CTAT-------atcctaat
gi|17 : gagggggg-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---C-A--TTTAACTTCG-A--
gi|2 : tAACACTTGATAGAGGGATGATT----GCGTAAACAACGCATACAT-GAGTGTTGATAAGGACAG---GGCCGTTTTT-GACAATTTCCTTGAAAATTGAAATCATAGCATTT-------GTTCACT---TA-C----CCCTGTTGTTGTTGCAGAAGTGTGCTATGGGGGCTT--GCATGTACAAAGGCCAGAGTTCCTGATCTACACT---------------GGGGTT-------------AGT--AAAATGGATATCATAGTCACGCCAGCCCCAACCAGGT---GAC-TTGCTAGCCCCCAAGCGAATTGTGTGCATAATATTTAAATAACGAAATGGCACATTCTGGATGTGCACCAGTAAAGATCGATACATAAAACAAGAA-ATAAATCAGTCCAGAACTTGAATATCTGTGATAGAATTTTGTTTTGATTTTTTTT-GTC--ATTGCTTAGGTTCCCATC-TTGAAGGA-AGACAAAAAT-AC-TTGGGTTGTCATCATCAGGTCTTGAAAAA-ATATTGC--TTAATTTAG--CTAAATTAACATACTGCCACATATTGGGCAATTAGAAACTTTGG-T-----TTTATTGGGGCACATAGTTAGCCTAGGTCTAA-CTATAGCTTGGCGCTTGCCTAGGCGAGTAAATCTCGCCAACATGATCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGAAT--GACGTTTGCCTCCATGGCCCGGACTGGGATGGGTCGCTCCGCTGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTAATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGCTATCCCCGACC------GTAGTGACGCTCGTGTTCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCCTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGCTGTGCTTCTC---T--TTTCGGCATTA-TGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCAAAGTA-ACAAGAATGCAATGTGTAGTGA---A-CTAGTCCAGTATGTACACAAATCC--AA-A-----------GCAACAAAGGCACCGAGAAAGTCAAATGCA--AG--TTTTTTGTTCCG-ATGT-GAACGAGGAAAATTTCACACGTCCT-ATCTCGTTGAAT--------------------GGGTCTC--TTGCACGGTGGG-CGTGACGTAAC----------C--AAA--GCC-CCCA--CTAT-------AGGG-TAA---C---T-AGTACCCGGAA-AG-TACCACGC-TAATA-G-GT-TTTAGT-AG-AC-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--ta
gi|3 : gt-CAAAAATATAAATCAGTTCAGA-CTTGAATATCTGTGATAGATTTATGCTTTGATTTTTTCT--TC--ATTAAA-AGGTTCCCATC-TTGAAGGGAA-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGC--TTAACTTAG--CTAAATTAATATACTGCC---CATTGG-CAATTA-GAACTTTAG-T-----TTTATTGGG-CACATTGT-AGCCTGGGTATAAAAGGTAGCTTGGTGCTTGTGCAGGCGAGTAAATCTCGCCAACACGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--AGAAG---TATC-----CTCAGAAAT--GACGTTTGCCTCCGTGGCCCGGACTGGGATGGAGCGCTCCGCCGAGTTTATCCCGGCCGCCATTCCCGCCGAAATGGCGTCAGTTATTTGTTTTAGTTGTTCATCGGTGAGGCGTGGGTTATCCACGACC------GTATTAACGCTCGTGCCCTGTTTGGAATGTCCAGCCTTAATCAAACTCTTCATAGGAATCCCTCTCTTTCGTCCTCTGGTCGGGGGATGTGCTTCTCTTTTTCTTTTTGCATAATTACAAATCCCGTATATCAAGTCCTCGTGCAAAATGCGAAGTGTACAAACATGCAATGAGTAACAA--TT-CTAGTCCGGTATGTACAC-AATTCCAAATAAATCAATAAATGTAACAAAAGCACCGAGAAA-TCAAATGCAACAG--TGTTTTGTTCCG-ATAT-GAACAAGAAA---TTCACACGTCAT-ACCTCTTTGAATTACCATGTGCGCACTGCT-GGGGACGCTTTTGCACGGTGGGTCGTGAC---------CGTAAGC--AAGTCGTC-CCCA--CTAT-------AAGGTTAG---CGTTT-A-CACCCGGAATAGTT---ACGCTTGA-A-T-AT-TTTCGG-AGCAA-TA-----A-T---T-TATATTTTGCTTTG-ATAAA--TC---G-ATTTTTCACTTCGAA--AGTATTAAtga
gi|4 : TGATAGATTTTTGCTTTGATTTTTTTTTGTC--ATTGCT-AAGTTCCCATC-TTGAATGG-A-----AAATTA--TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGC--TTAATTTAG--CTAAATTAACATACTGCC---CATTGG-CAATTA-GAATTTTGA-T-----TTTATTGGG-CACATTGT-AGCCTAGATCTAAACTATAGCTTGACGCTTGCCCAGACGCATAAATCTCGCCAACATGATCATTGAGTAGAAAATCAACATCA---GTATTACCTGG--GGGAG---TATC-----CTCAGGATT--GACGGTTGCTTCCGTGGCCCGGACTGTGATGAGTTGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCTGACCGTGCATGTAGTGACGCTCGTGCCCTATTCGGAATGTACAGCCTCACTCAAGCTCTTCTTAGGAGTTCCTCTCGTTCGTCCCCT-TTCGGGG-------TTCTCTTTT--TTTCGGCATTA-TGCAAATACCATATACCAAGTCCTAGGGCAAAATGCAAAGTA-ACAAGAATGCAATGTGTAACAAACTAGTTAGTCCAGTATGTATACAAATCCA-AATAAGTCAA-AAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTCTCTGTTCCG-ATGT-GAACGAGAAAAAATCCACACGTCCT-ATTTCGTTTAATTTCCATGTGTGAACTGCT-GGGACCAC--TTGCACGATGGA-CGTGACGTAAC----------C--AAAA-GAC-CCTA--CTAT-------AGGG-TAA---C---T-AATACCCGGAA-AG-T---AC------CA-C-GC--------AG-AG-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACatc
gi|5 : TAATGTAGGGGTGGTTTTGTGCATGAACAGGATATGCATTG--TGTTTATATCGACAATTTAACT-TATT---ACACTGCCCCTTGTGATTGAAATCATAACATTTAAGGAGCATTGGCTGAGTGGCGGAAGTCTG-GACGGTTG-----ATGTATTG--------T--ACATGTACAAGAGCCATAGCTCTTGGTCAACAACGGCGAATGAAAGAGAAGAGTAAGCCTCCTTTTTCAGCCAAAACTGAATGTCATAGTCACGCCATCGTA----AGGTTTGGACTCTGCTTGCCCCTAATCTAATAGTGTGAATA-TATTTGAATAATTCAATCCTGCTCCCGGGATGTGCTGGAGTATAAATAGAAGCATAAA-TGAGAA-AGACATCTGTCCAGT-TTTGTATATCGGCAAT-GACCTTGGCTTTGGTCTCGGGG-GCCAAATTA---AGGTTACCTTCTTTCAAGGT-G-----AAAT-GACTTGGG--ATCGACCCCA---TTTGA-----AT-TTTCAATCAATATAGCCCTAAATTGATGTAATCCC---CAT-------TTA-AAATTTTGGATTTCAATTTATTATG-CACCATGT-GTCCCAAATCc
gi|6 : tgcaATACTTAATAGAGGGATGATT----ACGTGAACAATGCATGCAA-GAATGTTGATAAGGGCAG---AACT-TTTTT-GACAATTTCCCCTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCCAGTACTATTGCTGGCGTGTGTTGTGGGGGCTTTTGCATGTACAAAAGCCATAGGTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTTTTTCTTTAATCGAAAATGGATATCGTAGTCAGGCCAGCCCAAATCAGGT---GAC-CTGCTAGCCCTCAAGTGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATATGCACTAGTAAAAATTGATGCATAAA-CAAGAA-Aattg
gi|7 : CTGAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---GACT-TCTTAAGACAATTTCCCTGGAAATTGAAACCATAGCATTT-------GTTTACT---TGGC----C------ACTGTTGCTGTGTTGTGCTAAGGGGGCTT--GCATGTACAGAAGTCAGAGTTCCTGATCAACACTAGCAAATGACATACTGGGGTTTTGTTCCATATTTAATCGAAAATGGATATCATAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGGATTGTGTGCATA-T
gi|8 : AACAG--TGTTTTGTTCCGGATATTGAAC---AAAAATTC-ACACGTCATTACCTCTTTGATTTACCATGTGCGCACTGCTTGGGGACGC--T-GCACGGTGGG-CGTGACGTA---------AG-C--AAGT-GTCACCCA--CTAT-------AAGGTTAG---CT--T-ACCACCCGGAA-AG-T---ACGT-GGAAA-T-AT-TTTCGG-AG-AA-TA-----ATT---T-AATATTT-GCTTTG-ATAAATTCA---G-AT-TTTCACTTCGAA--AGTATTtc
gi|9 : TC-----CTCAGGATT--GACGGTTGCTTCCGTGGGCTGGACTGGGATGGGTCACTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGCGATGGCGTCAGTTATATGTTTGAGTTGATCATCAGTGAGGCGTGGGTTATCCCCGACC------GTCGTGACGCTCGTGCCCTGTTCAGAATGTCCCGCTTCAATCGGGCCCTTCCTAAGGGGCCCTCTCTTCCATCCCCTGGtaaat
Alignments
lowQualScore : 1111 111 11 2222222 111 22222222222 11 1 111 111 11 111 2222222 2222 11 11 11 111 11111 1111 111 111 111 11111 222222 11 1 1 22222 2 11 44444444444 1111 1111111 2222222 22222 111111
lowQualScore : 7777 1 99 0 444 8 44 0 6666666 444 77777777777 1 77 6 11 1 3 0 0 66 1 3 0 444 8 6 0 5 3 1 6 6 0 8 0 1 555 11 777 8 2222222 1111 88 1 0 55 0 11 11 4 444 0 8 6 6 66666 6 3 6 5555 0 5 1 0 444 222 444 66666 1 99 333333 1 55 3 33 0 1 5 0 5 44444 3 2 0 3 33 9 2 0 11 0 8 8 6 3 0 1 5 0 8 0 1 3 5 0 1 66 4 66 4 44444444444 5555 4 66 4444444 6 3333333 5 5 5 00000 5 1 888 4 1 55 4 4 111111 4 777 4 4 3 4 55 777 4 99 8 66
lowQualScore : .... . .. . ... . .. . ....... ... ........... . .. . .. . . . . .. . . . ... . . . . . . . . . . . . ... .. ... . ....... .... .. . . .. . .. .. . ... . . . . ..... . . . .... . . . . ... ... ... ..... . .. ...... . .. . .. . . . . . ..... . . . . .. . . . .. . . . . . . . . . . . . . . . . .. . .. . ........... .... . .. ....... . ....... . . . ..... . . ... . . .. . . ...... . ... . . . . .. ... . .. . ..
lowQualScore : 0000 4 44 8 000 0 00 6 0000000 000 88888888888 0 00 0 00 4 8 6 8 66 0 2 8 000 0 7 8 6 6 4 7 7 6 0 8 4 000 00 888 0 0000000 0000 88 4 8 66 8 00 00 6 000 8 0 7 7 77777 7 2 7 8888 8 6 4 8 000 444 000 77777 0 22 000000 0 55 2 88 2 0 5 2 5 55555 2 5 0 2 55 2 5 8 00 6 0 0 4 8 8 0 0 6 0 6 9 0 0 5 0 11 4 11 4 88888888888 8888 4 11 4444444 5 2222222 0 4 0 44444 0 0 000 4 1 66 4 0 000000 0 000 0 1 7 0 55 000 0 55 9 11
consensus : AATACTTAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---AACT-TTTTT-GACAATTTCCCTTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCTGTTACTGTTGCTGGNGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTCCTTCTTTAATCGAAAATGGATATCGTAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATAAATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTTTTCT-GTC--ATTGNT-AGGTTCCCATC-TTGAAGGG-A-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAACATATTGC--TTAATTTAG--CTAAATTAACGTACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTGTAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCNTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGATGTGCTTCTCTTTT--TTTCGGCATNATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTGTACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACACAAATCCAAATAAGTCAATAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTTTTTGTTCCG-ATAT-GAACGAGAAAAATTCCACACGTCAT-ACCTCTTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGG-CGTG--A-CGTAAC----------CAAAT-GNC-CCCA--CTAT-------AGGGTTAG---C---T-AGCACCCGGAA-AG-T---ACGC-TGATA-C-GT-TTTCGG-AG-AA-TN-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
Reference ( family-11972 ) : AATACTTAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---AACT-TTTTT-GACAATTTCCCTTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCTGTTACTGTTGCTGGNGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTCCTTCTTTAATCGAAAATGGATATCGTAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATAAATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTTTTCT-GTC--ATTGNT-AGGTTCCCATC-TTGAAGGG-A-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAACATATTGC--TTAATTTAG--CTAAATTAACGTACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTGTAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCNTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGATGTGCTTCTCTTTT--TTTCGGCATNATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTGTACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACACAAATCC-AATAAGTCAATAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTTTTTGTTCCG-ATAT-GAACGAGAAAAATTCCACACGTCAT-ACCTCTTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGG-CGTG--A-CGTAAC---------ACAAAT-GNC-CCCA--CTAT-------AGGGTTAG---C---T-AGCACCCGGAA-AG-T---ACGC-TGATA-C-GT-TTTCGG-AG-AA-TN-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
gi|1 : AATACTTAATAGAGGAATGATT----TCGTTAACAATGCATGCAA-GAATGTTTATAAGGGCAG---AACT-TTTTT-GTCAATTTCCCTTGAAATTGAAATCGTAGTATTT-------GTTGACT---TGGC----TCTTATTACTGTTGCTGGCGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCTACACTAACAAATGACATAC-GGGGTTTTGTTCCTTCTTTAATCGAAAATGGACATTGCAGTCACGCCAGCCAAAACCAGGT---GAC-CTGCTAGCCCTCAAGTGAATTGTGTGTATA-TAT--------------GGCACATTCTGGATGTGCACTAGTAAAGATCGATGCATAAA-CAAGAA-ATAAATTAGTTGAGA-TTTGAACATCTCTGATAGATTTATGCTTTGGTTTTTTC--GTC--ATTGAT-AGGTCCCCATC-TTGAAGGG-A-----AAAC-A--TTGGGT-GTCATCATCAGGGTATGAAAAACATATTGC--TTAATTTAG--CTAAATTAATTTTCTGCC---CATTGG-CAATTA-AAACTTTAG-T-----TTTATTGGG-CACATTGT-AGCCTGGGTCTAAATTGTAGCTTGGTGCATGCGCAGGCGAGTAAATCTCGTCAACATGGTCATTGAGTATAAAATCAACATCA---TCATTACCTGG--AGGAG---TATC-----CTCAGGATT--GACGGTTGCTTCCGTGGCCCGGACTGGGATGGGTCGCTCAGCCGAGTTCATCCCGGCCGCCATTCCCGCCTAAATGCCGTTAGTTATTTGCTTTAGTTGTTCATTGGTGAGGCGTGGGCTATCCCCGACC------GTAGTAACGCTCGTGCCCTGTTCGGAATGTTCAGCCTTACTCAAACCCTTCATACGAGTCCCTCTCTTTCGTCCCGTGGTCGGGGGATGTGCTTCTCTTTT--TTTTAGCATAATTACAAATCCCATACACCAAGTTCTTTGGCAAAATGCGAAGTGTAAAAAAATGCAATGTGTAACGA--TA-CTAGTCCGTTATTTACAC-AAT-----TAAGTCAATAAATGTAACAAAAGCACTGAGAAAGTCAAATGCAACAGTTTTTTTTATTCCG-ATAT-GAGCAAG---AATTCAACACCTCAT-ACCTCTTTGAATTTCTATGCGCTCACTGCT-GGGGATGC--TTGCACGGTGGG-CGTG--A-CGTGACGTGACGTAAGCAAGT-GTC-CCCA--CTAT-------AAAGTTAG---T---T-AGCACCCGGAA-AG-T---ACGC-TGGTA-C-GT-TTTCGG-AG-AA-TA-----A-T---T-GATATTTTGCTTTG-ATAAA--CC---G-A--TTTAACTTTG-A--AGTATTAA
gi|10 : GAATTTCCATGTGCGAACTACT-GGGGACTC--TTGCACGGTGGG-TGTG--G-CGTAAC----------CAAA---AA-CCCA--CTAT-------TGGGTTAGATACATGT-AATACCCGGAA-AG-TACCACGC-TGTTA-C-GT-TTCAAT-AG-AATTT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-ATGAGTA
gi|11 : AACTT-AGACTTTGA-T-----TTTATTAGA-CAC------AGCTCAGTGCTAA-----AGCTTGGTGTCCGTCC---CG-GTAAATATTGCCAATATTGCCATTGAAAATAAAGCC--CATTAACTGCATTATCTGGCCTGAAGGCTTACCTTACACTCGTGCCTGAGACGGGTGCCTTCGTa
gi|12 : attatg--TTGTACAATGAT-TGTG--A-CGTAAC----------TAAAT-GAC-CACAAATAATCAAGAAGAGAAATGG---C---C-AGCAGCTGGAA-AT-T---ACCT-TCATAAC-GTATCTCAGTAA-AA-TATCTTGA-TACAT-G-TATCTAGCTTTGGAAAAA--TC---G-A--CTTAACTTCG-A--GGAGTTA
gi|13 : gctttATGTGCGAACTGTT-GGGGTCT---TTGCACGGTGGG-CGTAGTA-CGTAAC---------CAAAAT--AC-CCCA--CTAT-------AGGGT-AA---C---TGAATACCCGGAA-AGAC---ACGC-TGATA-G-GT-TTTAGT-AG-AG-GT-----A-T---T-GCTATTTAGCTTTG-GTAAA--CC---G-A--TTTAACTTCG-A--ga
gi|14 : GCGGATTGTGTGCATA-TATTTGAA-AACGGAATGGTACATTCTGGATGTGCACTAGCCAAAATTGATGCATAAG-TAAGAA-ATACATCAGTCTAGA-CTTGAATATCTTTGtgagt
gi|15 : GGTA-CTGT-TACCGG-AG-AA-TA-----A-T---TTATTATTTTGCA--G-ATAAA--CTTGAGCA--TTTAACTTCG-A--ATTGTTAA
gi|16 : GGATTTCCATGGGCAAACTGCT-AGGGACTC--TTGCACGTTGGG-CGTG--A-CGTAAC----------CAAA--AAC-TCCA--CTAT-------atcctaat
gi|17 : gagggggg-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---C-A--TTTAACTTCG-A--
gi|2 : tAACACTTGATAGAGGGATGATT----GCGTAAACAACGCATACAT-GAGTGTTGATAAGGACAG---GGCCGTTTTT-GACAATTTCCTTGAAAATTGAAATCATAGCATTT-------GTTCACT---TA-C----CCCTGTTGTTGTTGCAGAAGTGTGCTATGGGGGCTT--GCATGTACAAAGGCCAGAGTTCCTGATCTACACT---------------GGGGTT-------------AGT--AAAATGGATATCATAGTCACGCCAGCCCCAACCAGGT---GAC-TTGCTAGCCCCCAAGCGAATTGTGTGCATAATATTTAAATAACGAAATGGCACATTCTGGATGTGCACCAGTAAAGATCGATACATAAAACAAGAA-ATAAATCAGTCCAGAACTTGAATATCTGTGATAGAATTTTGTTTTGATTTTTTTT-GTC--ATTGCTTAGGTTCCCATC-TTGAAGGA-AGACAAAAAT-AC-TTGGGTTGTCATCATCAGGTCTTGAAAAA-ATATTGC--TTAATTTAG--CTAAATTAACATACTGCCACATATTGGGCAATTAGAAACTTTGG-T-----TTTATTGGGGCACATAGTTAGCCTAGGTCTAA-CTATAGCTTGGCGCTTGCCTAGGCGAGTAAATCTCGCCAACATGATCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGAAT--GACGTTTGCCTCCATGGCCCGGACTGGGATGGGTCGCTCCGCTGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTAATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGCTATCCCCGACC------GTAGTGACGCTCGTGTTCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCCTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGCTGTGCTTCTC---T--TTTCGGCATTA-TGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCAAAGTA-ACAAGAATGCAATGTGTAGTGA---A-CTAGTCCAGTATGTACACAAATCC-AA-A-----------GCAACAAAGGCACCGAGAAAGTCAAATGCA--AG--TTTTTTGTTCCG-ATGT-GAACGAGGAAAATTTCACACGTCCT-ATCTCGTTGAAT--------------------GGGTCTC--TTGCACGGTGGG-CGTG--A-CGTAAC----------CAAA--GCC-CCCA--CTAT-------AGGG-TAA---C---T-AGTACCCGGAA-AG-TACCACGC-TAATA-G-GT-TTTAGT-AG-AC-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--ta
gi|3 : gt-CAAAAATATAAATCAGTTCAGA-CTTGAATATCTGTGATAGATTTATGCTTTGATTTTTTCT--TC--ATTAAA-AGGTTCCCATC-TTGAAGGGAA-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGC--TTAACTTAG--CTAAATTAATATACTGCC---CATTGG-CAATTA-GAACTTTAG-T-----TTTATTGGG-CACATTGT-AGCCTGGGTATAAAAGGTAGCTTGGTGCTTGTGCAGGCGAGTAAATCTCGCCAACACGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--AGAAG---TATC-----CTCAGAAAT--GACGTTTGCCTCCGTGGCCCGGACTGGGATGGAGCGCTCCGCCGAGTTTATCCCGGCCGCCATTCCCGCCGAAATGGCGTCAGTTATTTGTTTTAGTTGTTCATCGGTGAGGCGTGGGTTATCCACGACC------GTATTAACGCTCGTGCCCTGTTTGGAATGTCCAGCCTTAATCAAACTCTTCATAGGAATCCCTCTCTTTCGTCCTCTGGTCGGGGGATGTGCTTCTCTTTTTCTTTTTGCATAATTACAAATCCCGTATATCAAGTCCTCGTGCAAAATGCGAAGTGTACAAACATGCAATGAGTAACAA--TT-CTAGTCCGGTATGTACACAATTCCAAATAAATCAATAAATGTAACAAAAGCACCGAGAAA-TCAAATGCAACAG--TGTTTTGTTCCG-ATAT-GAACAAGAAA---TTCACACGTCAT-ACCTCTTTGAATTACCATGTGCGCACTGCT-GGGGACGCTTTTGCACGGTGGGTCGTG--ACCGTAA----------GCAAGTCGTC-CCCA--CTAT-------AAGGTTAG---CGTTT-A-CACCCGGAATAGTT---ACGCTTGA-A-T-AT-TTTCGG-AGCAA-TA-----A-T---T-TATATTTTGCTTTG-ATAAA--TC---G-ATTTTTCACTTCGAA--AGTATTAAtga
gi|4 : TGATAGATTTTTGCTTTGATTTTTTTTTGTC--ATTGCT-AAGTTCCCATC-TTGAATGG-A-----AAATTA--TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGC--TTAATTTAG--CTAAATTAACATACTGCC---CATTGG-CAATTA-GAATTTTGA-T-----TTTATTGGG-CACATTGT-AGCCTAGATCTAAACTATAGCTTGACGCTTGCCCAGACGCATAAATCTCGCCAACATGATCATTGAGTAGAAAATCAACATCA---GTATTACCTGG--GGGAG---TATC-----CTCAGGATT--GACGGTTGCTTCCGTGGCCCGGACTGTGATGAGTTGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCTGACCGTGCATGTAGTGACGCTCGTGCCCTATTCGGAATGTACAGCCTCACTCAAGCTCTTCTTAGGAGTTCCTCTCGTTCGTCCCCT-TTCGGGG-------TTCTCTTTT--TTTCGGCATTA-TGCAAATACCATATACCAAGTCCTAGGGCAAAATGCAAAGTA-ACAAGAATGCAATGTGTAACAAACTAGTTAGTCCAGTATGTATACAAATCCAAATAAGTCAA-AAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTCTCTGTTCCG-ATGT-GAACGAGAAAAAATCCACACGTCCT-ATTTCGTTTAATTTCCATGTGTGAACTGCT-GGGACCAC--TTGCACGATGGA-CGTG--A-CGTAAC----------CAAAA-GAC-CCTA--CTAT-------AGGG-TAA---C---T-AATACCCGGAA-AG-T---AC------CA-C-GC--------AG-AG-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACatc
gi|5 : TAATGTAGGGGTGGTTTTGTGCATGAACAGGATATGCATTG--TGTTTATATCGACAATTTAACT-TATT---ACACTGCCCCTTGTGATTGAAATCATAACATTTAAGGAGCATTGGCTGAGTGGCGGAAGTCTG-GACGGTTG-----ATGTATTG--------T--ACATGTACAAGAGCCATAGCTCTTGGTCAACAACGGCGAATGAAAGAGAAGAGTAAGCCTCCTTTTTCAGCCAAAACTGAATGTCATAGTCACGCCATCGTA----AGGTTTGGACTCTGCTTGCCCCTAATCTAATAGTGTGAATA-TATTTGAATAATTCAATCCTGCTCCCGGGATGTGCTGGAGTATAAATAGAAGCATAAA-TGAGAA-AGACATCTGTCCAGT-TTTGTATATCGGCAAT-GACCTTGGCTTTGGTCTCGGGG-GCCAAATTA---AGGTTACCTTCTTTCAAGGT-G-----AAAT-GACTTGGG--ATCGACCCCA---TTTGA-----AT-TTTCAATCAATATAGCCCTAAATTGATGTAATCCC---CAT-------TTA-AAATTTTGGATTTCAATTTATTATG-CACCATGT-GTCCCAAATCc
gi|6 : tgcaATACTTAATAGAGGGATGATT----ACGTGAACAATGCATGCAA-GAATGTTGATAAGGGCAG---AACT-TTTTT-GACAATTTCCCCTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCCAGTACTATTGCTGGCGTGTGTTGTGGGGGCTTTTGCATGTACAAAAGCCATAGGTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTTTTTCTTTAATCGAAAATGGATATCGTAGTCAGGCCAGCCCAAATCAGGT---GAC-CTGCTAGCCCTCAAGTGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATATGCACTAGTAAAAATTGATGCATAAA-CAAGAA-Aattg
gi|7 : CTGAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---GACT-TCTTAAGACAATTTCCCTGGAAATTGAAACCATAGCATTT-------GTTTACT---TGGC----C------ACTGTTGCTGTGTTGTGCTAAGGGGGCTT--GCATGTACAGAAGTCAGAGTTCCTGATCAACACTAGCAAATGACATACTGGGGTTTTGTTCCATATTTAATCGAAAATGGATATCATAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGGATTGTGTGCATA-T
gi|8 : AACAG--TGTTTTGTTCCGGATATTGAAC---AAAAATTC-ACACGTCATTACCTCTTTGATTTACCATGTGCGCACTGCTTGGGGACGC--T-GCACGGTGGG-CGTG--A-CGTAA----------GCAAGT-GTCACCCA--CTAT-------AAGGTTAG---CT--T-ACCACCCGGAA-AG-T---ACGT-GGAAA-T-AT-TTTCGG-AG-AA-TA-----ATT---T-AATATTT-GCTTTG-ATAAATTCA---G-AT-TTTCACTTCGAA--AGTATTtc
gi|9 : TC-----CTCAGGATT--GACGGTTGCTTCCGTGGGCTGGACTGGGATGGGTCACTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGCGATGGCGTCAGTTATATGTTTGAGTTGATCATCAGTGAGGCGTGGGTTATCCCCGACC------GTCGTGACGCTCGTGCCCTGTTCAGAATGTCCCGCTTCAATCGGGCCCTTCCTAAGGGGCCCTCTCTTCCATCCCCTGGtaaat
Alignments
lowQualScore : 1111 111 11 2222222 111 22222222222 11 1 111 111 11 111 2222222 2222 11 11 11 111 11111 1111 111 111 111 11111 222222 11 1 1 22222 11 1111111111 11 1111111 2222222 22222 111111
lowQualScore : 7777 1 99 0 444 8 44 0 6666666 444 77777777777 1 77 6 11 1 3 0 0 66 1 3 0 444 8 6 0 5 3 1 6 6 0 8 0 1 555 11 777 8 2222222 1111 88 1 0 55 0 11 11 4 444 0 8 6 6 66666 6 3 6 5555 0 5 1 0 444 222 444 66666 1 99 333333 1 55 3 33 0 1 5 0 5 44444 3 2 3 0 9 2 0 11 0 8 8 6 3 0 1 5 0 8 0 1 3 5 0 1 66 4 66 4 9999999999 77 1 4 66 4444444 6 3333333 5 5 5 00000 5 1 888 4 1 55 4 4 111111 4 777 4 4 3 4 55 777 4 99 8 66
lowQualScore : .... . .. . ... . .. . ....... ... ........... . .. . .. . . . . .. . . . ... . . . . . . . . . . . . ... .. ... . ....... .... .. . . .. . .. .. . ... . . . . ..... . . . .... . . . . ... ... ... ..... . .. ...... . .. . .. . . . . . ..... . . . . . . . .. . . . . . . . . . . . . . . . . .. . .. . .......... .. . . .. ....... . ....... . . . ..... . . ... . . .. . . ...... . ... . . . . .. ... . .. . ..
lowQualScore : 0000 4 44 8 000 0 00 6 0000000 000 88888888888 0 00 0 00 4 8 6 8 66 0 2 8 000 0 7 8 6 6 4 7 7 6 0 8 4 000 00 888 0 0000000 0000 88 4 8 66 8 00 00 6 000 8 0 7 7 77777 7 2 7 8888 8 6 4 8 000 444 000 77777 0 22 000000 0 55 2 88 2 0 5 2 5 55555 2 5 2 2 2 5 8 00 6 0 0 4 8 8 0 0 6 0 6 9 0 0 5 0 11 4 11 4 4444444444 66 0 4 11 4444444 5 2222222 0 4 0 44444 0 0 000 4 1 66 4 0 000000 0 000 0 1 7 0 55 000 0 55 9 11
consensus : AATACTTAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---AACT-TTTTT-GACAATTTCCCTTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCTGTTACTGTTGCTGGNGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTCCTTCTTTAATCGAAAATGGATATCGTAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATAAATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTTTTCT-GTC--ATTGNT-AGGTTCCCATC-TTGAAGGG-A-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAACATATTGC--TTAATTTAG--CTAAATTAACGTACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTGTAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCNTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGATGTGCTTCTCTTTT--TTTCGGCATNATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTGTACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACACAAATCCAAATAAGTCAATAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTTTTTGTTCCG-ATAT-GAACGAGAAAAATTCCACACGTCAT-ACCTCTTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGG-CGTG--A-CGTAAC----------CAAAT-GNC-CCCA--CTAT-------AGGGTTAG---C---T-AGCACCCGGAA-AG-T---ACGC-TGATA-C-GT-TTTCGG-AG-AA-TN-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
Reference ( family-11972 ) : AATACTTAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---AACT-TTTTT-GACAATTTCCCTTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCTGTTACTGTTGCTGGNGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTCCTTCTTTAATCGAAAATGGATATCGTAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATAAATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTTTTCT-GTC--ATTGNT-AGGTTCCCATC-TTGAAGGG-A-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAACATATTGC--TTAATTTAG--CTAAATTAACGTACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTGTAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCNTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGATGTGCTTCTCTTTT--TTTCGGCATNATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTGTACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACACAAATCCAAATAAGTCAATAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTTTTTGTTCCG-ATAT-GAACGAGAAAAATTCCACACGTCAT-ACCTCTTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGG-CGTG--A-CGTAAC----------CAAAT-GNC-CCCA--CTAT-------AGGGTTAG---C---T-AGCACCCGGAA-AG-T---ACGC-TGATA-C-GT-TTTCGG-AG-AA-TN-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
gi|1 : AATACTTAATAGAGGAATGATT----TCGTTAACAATGCATGCAA-GAATGTTTATAAGGGCAG---AACT-TTTTT-GTCAATTTCCCTTGAAATTGAAATCGTAGTATTT-------GTTGACT---TGGC----TCTTATTACTGTTGCTGGCGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCTACACTAACAAATGACATAC-GGGGTTTTGTTCCTTCTTTAATCGAAAATGGACATTGCAGTCACGCCAGCCAAAACCAGGT---GAC-CTGCTAGCCCTCAAGTGAATTGTGTGTATA-TAT--------------GGCACATTCTGGATGTGCACTAGTAAAGATCGATGCATAAA-CAAGAA-ATAAATTAGTTGAGA-TTTGAACATCTCTGATAGATTTATGCTTTGGTTTTTTC--GTC--ATTGAT-AGGTCCCCATC-TTGAAGGG-A-----AAAC-A--TTGGGT-GTCATCATCAGGGTATGAAAAACATATTGC--TTAATTTAG--CTAAATTAATTTTCTGCC---CATTGG-CAATTA-AAACTTTAG-T-----TTTATTGGG-CACATTGT-AGCCTGGGTCTAAATTGTAGCTTGGTGCATGCGCAGGCGAGTAAATCTCGTCAACATGGTCATTGAGTATAAAATCAACATCA---TCATTACCTGG--AGGAG---TATC-----CTCAGGATT--GACGGTTGCTTCCGTGGCCCGGACTGGGATGGGTCGCTCAGCCGAGTTCATCCCGGCCGCCATTCCCGCCTAAATGCCGTTAGTTATTTGCTTTAGTTGTTCATTGGTGAGGCGTGGGCTATCCCCGACC------GTAGTAACGCTCGTGCCCTGTTCGGAATGTTCAGCCTTACTCAAACCCTTCATACGAGTCCCTCTCTTTCGTCCCGTGGTCGGGGGATGTGCTTCTCTTTT--TTTTAGCATAATTACAAATCCCATACACCAAGTTCTTTGGCAAAATGCGAAGTGTAAAAAAATGCAATGTGTAACGA--TA-CTAGTCCGTTATTTACAC-AAT-----TAAGTCAATAAATGTAACAAAAGCACTGAGAAAGTCAAATGCAACAGTTTTTTTTATTCCG-ATAT-GAGCAAG---AATTCAACACCTCAT-ACCTCTTTGAATTTCTATGCGCTCACTGCT-GGGGATGC--TTGCACGGTGGG-CGTG--A-CGTGACGTGACGTAAGCAAGT-GTC-CCCA--CTAT-------AAAGTTAG---T---T-AGCACCCGGAA-AG-T---ACGC-TGGTA-C-GT-TTTCGG-AG-AA-TA-----A-T---T-GATATTTTGCTTTG-ATAAA--CC---G-A--TTTAACTTTG-A--AGTATTAA
gi|10 : GAATTTCCATGTGCGAACTACT-GGGGACTC--TTGCACGGTGGG-TGTG--G-CGTAAC----------CAAA---AA-CCCA--CTAT-------TGGGTTAGATACATGT-AATACCCGGAA-AG-TACCACGC-TGTTA-C-GT-TTCAAT-AG-AATTT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-ATGAGTA
gi|11 : AACTT-AGACTTTGA-T-----TTTATTAGA-CAC------AGCTCAGTGCTAA-----AGCTTGGTGTCCGTCC---CG-GTAAATATTGCCAATATTGCCATTGAAAATAAAGCC--CATTAACTGCATTATCTGGCCTGAAGGCTTACCTTACACTCGTGCCTGAGACGGGTGCCTTCGTa
gi|12 : attatg--TTGTACAATGAT-TGTG--A-CGTAAC----------TAAAT-GAC-CACAAATAATCAAGAAGAGAAATGG---C---C-AGCAGCTGGAA-AT-T---ACCT-TCATAAC-GTATCTCAGTAA-AA-TATCTTGA-TACAT-G-TATCTAGCTTTGGAAAAA--TC---G-A--CTTAACTTCG-A--GGAGTTA
gi|13 : gctttATGTGCGAACTGTT-GGGGTCT---TTGCACGGTGGG-CGTAGTA-CGTAAC----------CAAAA-TAC-CCCA--CTAT-------AGGGT-AA---C---TGAATACCCGGAA-AGAC---ACGC-TGATA-G-GT-TTTAGT-AG-AG-GT-----A-T---T-GCTATTTAGCTTTG-GTAAA--CC---G-A--TTTAACTTCG-A--ga
gi|14 : GCGGATTGTGTGCATA-TATTTGAA-AACGGAATGGTACATTCTGGATGTGCACTAGCCAAAATTGATGCATAAG-TAAGAA-ATACATCAGTCTAGA-CTTGAATATCTTTGtgagt
gi|15 : GGTA-CTGT-TACCGG-AG-AA-TA-----A-T---TTATTATTTTGCA--G-ATAAA--CTTGAGCA--TTTAACTTCG-A--ATTGTTAA
gi|16 : GGATTTCCATGGGCAAACTGCT-AGGGACTC--TTGCACGTTGGG-CGTG--A-CGTAAC----------CAAA--AAC-TCCA--CTAT-------atcctaat
gi|17 : gagggggg-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---C-A--TTTAACTTCG-A--
gi|2 : tAACACTTGATAGAGGGATGATT----GCGTAAACAACGCATACAT-GAGTGTTGATAAGGACAG---GGCCGTTTTT-GACAATTTCCTTGAAAATTGAAATCATAGCATTT-------GTTCACT---TA-C----CCCTGTTGTTGTTGCAGAAGTGTGCTATGGGGGCTT--GCATGTACAAAGGCCAGAGTTCCTGATCTACACT---------------GGGGTT-------------AGT--AAAATGGATATCATAGTCACGCCAGCCCCAACCAGGT---GAC-TTGCTAGCCCCCAAGCGAATTGTGTGCATAATATTTAAATAACGAAATGGCACATTCTGGATGTGCACCAGTAAAGATCGATACATAAAACAAGAA-ATAAATCAGTCCAGAACTTGAATATCTGTGATAGAATTTTGTTTTGATTTTTTTT-GTC--ATTGCTTAGGTTCCCATC-TTGAAGGA-AGACAAAAAT-AC-TTGGGTTGTCATCATCAGGTCTTGAAAAA-ATATTGC--TTAATTTAG--CTAAATTAACATACTGCCACATATTGGGCAATTAGAAACTTTGG-T-----TTTATTGGGGCACATAGTTAGCCTAGGTCTAA-CTATAGCTTGGCGCTTGCCTAGGCGAGTAAATCTCGCCAACATGATCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGAAT--GACGTTTGCCTCCATGGCCCGGACTGGGATGGGTCGCTCCGCTGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTAATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGCTATCCCCGACC------GTAGTGACGCTCGTGTTCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCCTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGCTGTGCTTCTC---T--TTTCGGCATTA-TGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCAAAGTA-ACAAGAATGCAATGTGTAGTGA---A-CTAGTCCAGTATGTACACAAATCCAAA-------------GCAACAAAGGCACCGAGAAAGTCAAATGCA--AG--TTTTTTGTTCCG-ATGT-GAACGAGGAAAATTTCACACGTCCT-ATCTCGTTGAAT--------------------GGGTCTC--TTGCACGGTGGG-CGTG--A-CGTAAC----------CAAA--GCC-CCCA--CTAT-------AGGG-TAA---C---T-AGTACCCGGAA-AG-TACCACGC-TAATA-G-GT-TTTAGT-AG-AC-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--ta
gi|3 : gt-CAAAAATATAAATCAGTTCAGA-CTTGAATATCTGTGATAGATTTATGCTTTGATTTTTTCT--TC--ATTAAA-AGGTTCCCATC-TTGAAGGGAA-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGC--TTAACTTAG--CTAAATTAATATACTGCC---CATTGG-CAATTA-GAACTTTAG-T-----TTTATTGGG-CACATTGT-AGCCTGGGTATAAAAGGTAGCTTGGTGCTTGTGCAGGCGAGTAAATCTCGCCAACACGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--AGAAG---TATC-----CTCAGAAAT--GACGTTTGCCTCCGTGGCCCGGACTGGGATGGAGCGCTCCGCCGAGTTTATCCCGGCCGCCATTCCCGCCGAAATGGCGTCAGTTATTTGTTTTAGTTGTTCATCGGTGAGGCGTGGGTTATCCACGACC------GTATTAACGCTCGTGCCCTGTTTGGAATGTCCAGCCTTAATCAAACTCTTCATAGGAATCCCTCTCTTTCGTCCTCTGGTCGGGGGATGTGCTTCTCTTTTTCTTTTTGCATAATTACAAATCCCGTATATCAAGTCCTCGTGCAAAATGCGAAGTGTACAAACATGCAATGAGTAACAA--TT-CTAGTCCGGTATGTACACAATTCCAAATAAATCAATAAATGTAACAAAAGCACCGAGAAA-TCAAATGCAACAG--TGTTTTGTTCCG-ATAT-GAACAAGAAA---TTCACACGTCAT-ACCTCTTTGAATTACCATGTGCGCACTGCT-GGGGACGCTTTTGCACGGTGGGTCGTG--ACCGTAAG----------CAAGTCGTC-CCCA--CTAT-------AAGGTTAG---CGTTT-A-CACCCGGAATAGTT---ACGCTTGA-A-T-AT-TTTCGG-AGCAA-TA-----A-T---T-TATATTTTGCTTTG-ATAAA--TC---G-ATTTTTCACTTCGAA--AGTATTAAtga
gi|4 : TGATAGATTTTTGCTTTGATTTTTTTTTGTC--ATTGCT-AAGTTCCCATC-TTGAATGG-A-----AAATTA--TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGC--TTAATTTAG--CTAAATTAACATACTGCC---CATTGG-CAATTA-GAATTTTGA-T-----TTTATTGGG-CACATTGT-AGCCTAGATCTAAACTATAGCTTGACGCTTGCCCAGACGCATAAATCTCGCCAACATGATCATTGAGTAGAAAATCAACATCA---GTATTACCTGG--GGGAG---TATC-----CTCAGGATT--GACGGTTGCTTCCGTGGCCCGGACTGTGATGAGTTGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCTGACCGTGCATGTAGTGACGCTCGTGCCCTATTCGGAATGTACAGCCTCACTCAAGCTCTTCTTAGGAGTTCCTCTCGTTCGTCCCCT-TTCGGGG-------TTCTCTTTT--TTTCGGCATTA-TGCAAATACCATATACCAAGTCCTAGGGCAAAATGCAAAGTA-ACAAGAATGCAATGTGTAACAAACTAGTTAGTCCAGTATGTATACAAATCCAAATAAGTCAA-AAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTCTCTGTTCCG-ATGT-GAACGAGAAAAAATCCACACGTCCT-ATTTCGTTTAATTTCCATGTGTGAACTGCT-GGGACCAC--TTGCACGATGGA-CGTG--A-CGTAAC----------CAAAA-GAC-CCTA--CTAT-------AGGG-TAA---C---T-AATACCCGGAA-AG-T---AC------CA-C-GC--------AG-AG-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACatc
gi|5 : TAATGTAGGGGTGGTTTTGTGCATGAACAGGATATGCATTG--TGTTTATATCGACAATTTAACT-TATT---ACACTGCCCCTTGTGATTGAAATCATAACATTTAAGGAGCATTGGCTGAGTGGCGGAAGTCTG-GACGGTTG-----ATGTATTG--------T--ACATGTACAAGAGCCATAGCTCTTGGTCAACAACGGCGAATGAAAGAGAAGAGTAAGCCTCCTTTTTCAGCCAAAACTGAATGTCATAGTCACGCCATCGTA----AGGTTTGGACTCTGCTTGCCCCTAATCTAATAGTGTGAATA-TATTTGAATAATTCAATCCTGCTCCCGGGATGTGCTGGAGTATAAATAGAAGCATAAA-TGAGAA-AGACATCTGTCCAGT-TTTGTATATCGGCAAT-GACCTTGGCTTTGGTCTCGGGG-GCCAAATTA---AGGTTACCTTCTTTCAAGGT-G-----AAAT-GACTTGGG--ATCGACCCCA---TTTGA-----AT-TTTCAATCAATATAGCCCTAAATTGATGTAATCCC---CAT-------TTA-AAATTTTGGATTTCAATTTATTATG-CACCATGT-GTCCCAAATCc
gi|6 : tgcaATACTTAATAGAGGGATGATT----ACGTGAACAATGCATGCAA-GAATGTTGATAAGGGCAG---AACT-TTTTT-GACAATTTCCCCTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCCAGTACTATTGCTGGCGTGTGTTGTGGGGGCTTTTGCATGTACAAAAGCCATAGGTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTTTTTCTTTAATCGAAAATGGATATCGTAGTCAGGCCAGCCCAAATCAGGT---GAC-CTGCTAGCCCTCAAGTGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATATGCACTAGTAAAAATTGATGCATAAA-CAAGAA-Aattg
gi|7 : CTGAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---GACT-TCTTAAGACAATTTCCCTGGAAATTGAAACCATAGCATTT-------GTTTACT---TGGC----C------ACTGTTGCTGTGTTGTGCTAAGGGGGCTT--GCATGTACAGAAGTCAGAGTTCCTGATCAACACTAGCAAATGACATACTGGGGTTTTGTTCCATATTTAATCGAAAATGGATATCATAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGGATTGTGTGCATA-T
gi|8 : AACAG--TGTTTTGTTCCGGATATTGAAC---AAAAATTC-ACACGTCATTACCTCTTTGATTTACCATGTGCGCACTGCTTGGGGACGC--T-GCACGGTGGG-CGTG--A-CGTAAG----------CAAGT-GTCACCCA--CTAT-------AAGGTTAG---CT--T-ACCACCCGGAA-AG-T---ACGT-GGAAA-T-AT-TTTCGG-AG-AA-TA-----ATT---T-AATATTT-GCTTTG-ATAAATTCA---G-AT-TTTCACTTCGAA--AGTATTtc
gi|9 : TC-----CTCAGGATT--GACGGTTGCTTCCGTGGGCTGGACTGGGATGGGTCACTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGCGATGGCGTCAGTTATATGTTTGAGTTGATCATCAGTGAGGCGTGGGTTATCCCCGACC------GTCGTGACGCTCGTGCCCTGTTCAGAATGTCCCGCTTCAATCGGGCCCTTCCTAAGGGGCCCTCTCTTCCATCCCCTGGtaaat
blockSeqs : TTGT C TT TTT G AA AAGGAGC GAG GGAAGTCTGG A AA T TT T G A AG T T TTG T A T G T A T A T TTT AA CTT T AGACAA GAC TT T A AA CC A ACA G G A TTCAA G A T AAGG A T ACT CCT GCT TTACA C GA GTGCAT C GC T TC T T T ACTAG A C T T G . G T G G T C T T A T T TT T GT C . TC A A AA CAAGAAG T ATACATG G A T TACC T T AC A A GT C T ATCTTG T ACA T C A G TT TGA C TT A TG
blockSeqs : . G T . . T . . CCCTGTT T GC T . A A T TT T C . . . T A C . . . A TT . AA . AA AC T C C . . A . . . . . . A . ACTA A C . G . . A . . A GA T . A . . TT A C T . G . . . A A A C . T A . T . . . . . T A . . . A CGTT . G . TACC . T CT . C T . . T . . . C A . . . . T A .
blockSeqs : . T A . . T . . CCCCAGT T TG A . A A T TT A A . . . T C A . . . T CT . CT . A TA T C C . . A . . . . . . A . CTA C C . A . . A . . T . . . T . . A A C . . . . . . G A T C . A A . T . . . . . A A . . . T CT . A . AC . T C . A T . . T . . . T A . . . . . . .
blockSeqs : . C T . . . . . C . . . . A . . . . . . . . . A T . . . T GG . . . G A . T A . . G . . . . . . C . . . G . G . . T . . C . . . . A . . . T C . T . . . . . A A . . . T C . G . TT . T G . C G . . A . . . C T . . . . . . .
blockSeqs : . . . . . . . . . . T . A A . G . . . . . T C . . . T C . A . T . T G . A T . . T . . . C A . . . . . . .
blockSeqs : . C . A . . . . . . T . . . . C . C . T . C T . C G . . T . . . A A . . . . . . .
blockSeqs : . . G . . . . . . A . . . . C . . . T . A C . C G . . A . . . C T . . . . . . .
blockSeqs : . . . . . . T . . . . T . . . . . T . . . A A . . . . . . .
blockSeqs : . A . . . . . . . . . .
blockSeqCons : NT* A*** N* ** **********
originalCons : AATACTTAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---AACT-TTTTT-GACAATTTCCCTTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCTGTTACTGTTGCTGGNGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTCCTTCTTTAATCGAAAATGGATATCGTAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATAAATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTTTTCT-GTC--ATTGNT-AGGTTCCCATC-TTGAAGGG-A-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAACATATTGC--TTAATTTAG--CTAAATTAACGTACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTGTAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCNTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGATGTGCTTCTCTTTT--TTTCGGCATNATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTGTACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACACAAATCCAAATAAGTCAATAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTTTTTGTTCCG-ATAT-GAACGAGAAAAATTCCACACGTCAT-ACCTCTTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGG-CGTG--A-CGTAAC----------CAAAT-GNC-CCCA--CTAT-------AGGGTTAG---C---T-AGCACCCGGAA-AG-T---ACGC-TGATA-C-GT-TTTCGG-AG-AA-TN-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
finalCons : AATACTTAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---AACT-TTTTT-GACAATTTCCCTTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCTGTTACTGTTGCTGGNGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTCCTTCTTTAATCGAAAATGGATATCGTAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATAAATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTTTTNT-GTC--ATTGNT-AGGTTCCCATC-TTGAAGGG-A-----AAATA---TTGGGT-GTCATCATCAGGGTCTGAAAAAN-TATTGC--TTAATTTAG--CTAAATTAACGTACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTGTAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCNTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGATGTGCTTCTCTTTT--TTTCGGCATNATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTGTACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACACAAATCCAAATAAGTCAATAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTTTTTGTTCCG-ATAT-GAACGAGAAAAATTCCACACGTCAT-ACCTCTTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGG-CGTG--A-CGTAAC----------CAAAT-GNC-CCCA--CTAT-------AGGGTTAG---C---T-AGCACCCGGAA-AG-T---ACGC-TGATA-C-GT-TTTCGG-AG-AA-TN-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
Alignments
lowQualScore : 1111 111 11 2222222 111 22222222222 11 1 111 111 11 111 2222222 2222 11 111 11111 1111 111 111 111 11111 222222 11 1 1 22222 11 1111111111 11 1111111 2222222 22222 111111
lowQualScore : 7777 1 99 0 444 8 44 0 6666666 444 77777777777 1 77 6 11 1 3 0 0 66 1 3 0 444 8 6 0 5 3 1 6 6 0 8 0 1 444 11 777 8 2222222 1111 88 1 0 99 11 4 444 0 8 6 6 66666 6 3 6 5555 0 5 1 0 444 222 444 66666 1 99 333333 1 55 3 33 0 1 5 0 5 44444 3 2 3 0 9 2 0 11 0 8 8 6 3 0 1 5 0 8 0 1 3 5 0 1 66 4 66 4 9999999999 77 1 4 66 4444444 6 3333333 5 5 5 00000 5 1 888 4 1 55 4 4 111111 4 777 4 4 3 4 55 777 4 99 8 66
lowQualScore : .... . .. . ... . .. . ....... ... ........... . .. . .. . . . . .. . . . ... . . . . . . . . . . . . ... .. ... . ....... .... .. . . .. .. . ... . . . . ..... . . . .... . . . . ... ... ... ..... . .. ...... . .. . .. . . . . . ..... . . . . . . . .. . . . . . . . . . . . . . . . . .. . .. . .......... .. . . .. ....... . ....... . . . ..... . . ... . . .. . . ...... . ... . . . . .. ... . .. . ..
lowQualScore : 0000 4 44 8 000 0 00 6 0000000 000 88888888888 0 00 0 00 4 8 6 8 66 0 2 8 000 0 7 8 6 6 4 7 7 6 0 8 4 666 00 888 0 0000000 0000 88 4 8 00 00 6 000 8 0 7 7 77777 7 2 7 8888 8 6 4 8 000 444 000 77777 0 22 000000 0 55 2 88 2 0 5 2 5 55555 2 5 2 2 2 5 8 00 6 0 0 4 8 8 0 0 6 0 6 9 0 0 5 0 11 4 11 4 4444444444 66 0 4 11 4444444 5 2222222 0 4 0 44444 0 0 000 4 1 66 4 0 000000 0 000 0 1 7 0 55 000 0 55 9 11
consensus : AATACTTAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---AACT-TTTTT-GACAATTTCCCTTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCTGTTACTGTTGCTGGNGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTCCTTCTTTAATCGAAAATGGATATCGTAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATAAATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTTTTCT-GTC--ATTGNT-AGGTTCCCATC-TTGAAGGG-A-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGCTTAATTTAG--CTAAATTAACGTACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTGTAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCNTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGATGTGCTTCTCTTTT--TTTCGGCATNATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTGTACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACACAAATCCAAATAAGTCAATAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTTTTTGTTCCG-ATAT-GAACGAGAAAAATTCCACACGTCAT-ACCTCTTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGG-CGTG--A-CGTAAC----------CAAAT-GNC-CCCA--CTAT-------AGGGTTAG---C---T-AGCACCCGGAA-AG-T---ACGC-TGATA-C-GT-TTTCGG-AG-AA-TN-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
Reference ( family-11972 ) : AATACTTAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---AACT-TTTTT-GACAATTTCCCTTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCTGTTACTGTTGCTGGNGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTCCTTCTTTAATCGAAAATGGATATCGTAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATGTGCACTAGTAAAAATCGATGCATAAA-CAAGAA-ATAAATCAGTCCAGA-CTTGAATATCTGTGATAGATTTTTGCTTTGATTTTTTNT-GTC--ATTGNT-AGGTTCCCATC-TTGAAGGG-A-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAAN-TATTGCTTAATTTAG--CTAAATTAACGTACTGCC---CATTGG-CAATTA-AAACTTTGG-T-----TTTATTGGG-CACATTGT-AGCCTAGGTCTAAACTGTAGCTTGGCGCTTGCCCAGGCGAGTAAATCTCGCCAACATGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGANT--GACGGTTGCCTCCGTGGCCCGGACTGGGATGGGTCGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCCGACC------GTAGTGACGCTCGTGCCCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCNTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGATGTGCTTCTCTTTT--TTTCGGCATNATTGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCGAAGTGTACAAGAATGCAATGTGTAACGA--TA-CTAGTCCGGTATGTACACAAATCCAAATAAGTCAATAAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTTTTTGTTCCG-ATAT-GAACGAGAAAAATTCCACACGTCAT-ACCTCTTTGAATTTCCATGTGCGAACTGCT-GGGGACNC--TTGCACGGTGGG-CGTG--A-CGTAAC----------CAAAT-GNC-CCCA--CTAT-------AGGGTTAG---C---T-AGCACCCGGAA-AG-T---ACGC-TGATA-C-GT-TTTCGG-AG-AA-TN-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--AGTATTAA
gi|1 : AATACTTAATAGAGGAATGATT----TCGTTAACAATGCATGCAA-GAATGTTTATAAGGGCAG---AACT-TTTTT-GTCAATTTCCCTTGAAATTGAAATCGTAGTATTT-------GTTGACT---TGGC----TCTTATTACTGTTGCTGGCGTGTGTTGTGGGGGCTT--GCATGTACAAAAGCCAGAGTTCCTGGTCTACACTAACAAATGACATAC-GGGGTTTTGTTCCTTCTTTAATCGAAAATGGACATTGCAGTCACGCCAGCCAAAACCAGGT---GAC-CTGCTAGCCCTCAAGTGAATTGTGTGTATA-TAT--------------GGCACATTCTGGATGTGCACTAGTAAAGATCGATGCATAAA-CAAGAA-ATAAATTAGTTGAGA-TTTGAACATCTCTGATAGATTTATGCTTTGGTTTTTTC--GTC--ATTGAT-AGGTCCCCATC-TTGAAGGG-A-----AAAC-A--TTGGGT-GTCATCATCAGGGTATGAAAAACATATTGCTTAATTTAG--CTAAATTAATTTTCTGCC---CATTGG-CAATTA-AAACTTTAG-T-----TTTATTGGG-CACATTGT-AGCCTGGGTCTAAATTGTAGCTTGGTGCATGCGCAGGCGAGTAAATCTCGTCAACATGGTCATTGAGTATAAAATCAACATCA---TCATTACCTGG--AGGAG---TATC-----CTCAGGATT--GACGGTTGCTTCCGTGGCCCGGACTGGGATGGGTCGCTCAGCCGAGTTCATCCCGGCCGCCATTCCCGCCTAAATGCCGTTAGTTATTTGCTTTAGTTGTTCATTGGTGAGGCGTGGGCTATCCCCGACC------GTAGTAACGCTCGTGCCCTGTTCGGAATGTTCAGCCTTACTCAAACCCTTCATACGAGTCCCTCTCTTTCGTCCCGTGGTCGGGGGATGTGCTTCTCTTTT--TTTTAGCATAATTACAAATCCCATACACCAAGTTCTTTGGCAAAATGCGAAGTGTAAAAAAATGCAATGTGTAACGA--TA-CTAGTCCGTTATTTACAC-AAT-----TAAGTCAATAAATGTAACAAAAGCACTGAGAAAGTCAAATGCAACAGTTTTTTTTATTCCG-ATAT-GAGCAAG---AATTCAACACCTCAT-ACCTCTTTGAATTTCTATGCGCTCACTGCT-GGGGATGC--TTGCACGGTGGG-CGTG--A-CGTGACGTGACGTAAGCAAGT-GTC-CCCA--CTAT-------AAAGTTAG---T---T-AGCACCCGGAA-AG-T---ACGC-TGGTA-C-GT-TTTCGG-AG-AA-TA-----A-T---T-GATATTTTGCTTTG-ATAAA--CC---G-A--TTTAACTTTG-A--AGTATTAA
gi|10 : GAATTTCCATGTGCGAACTACT-GGGGACTC--TTGCACGGTGGG-TGTG--G-CGTAAC----------CAAA---AA-CCCA--CTAT-------TGGGTTAGATACATGT-AATACCCGGAA-AG-TACCACGC-TGTTA-C-GT-TTCAAT-AG-AATTT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-ATGAGTA
gi|11 : AACTT-AGACTTTGA-T-----TTTATTAGA-CAC------AGCTCAGTGCTAA-----AGCTTGGTGTCCGTCC---CG-GTAAATATTGCCAATATTGCCATTGAAAATAAAGCC--CATTAACTGCATTATCTGGCCTGAAGGCTTACCTTACACTCGTGCCTGAGACGGGTGCCTTCGTa
gi|12 : attatg--TTGTACAATGAT-TGTG--A-CGTAAC----------TAAAT-GAC-CACAAATAATCAAGAAGAGAAATGG---C---C-AGCAGCTGGAA-AT-T---ACCT-TCATAAC-GTATCTCAGTAA-AA-TATCTTGA-TACAT-G-TATCTAGCTTTGGAAAAA--TC---G-A--CTTAACTTCG-A--GGAGTTA
gi|13 : gctttATGTGCGAACTGTT-GGGGTCT---TTGCACGGTGGG-CGTAGTA-CGTAAC----------CAAAA-TAC-CCCA--CTAT-------AGGGT-AA---C---TGAATACCCGGAA-AGAC---ACGC-TGATA-G-GT-TTTAGT-AG-AG-GT-----A-T---T-GCTATTTAGCTTTG-GTAAA--CC---G-A--TTTAACTTCG-A--ga
gi|14 : GCGGATTGTGTGCATA-TATTTGAA-AACGGAATGGTACATTCTGGATGTGCACTAGCCAAAATTGATGCATAAG-TAAGAA-ATACATCAGTCTAGA-CTTGAATATCTTTGtgagt
gi|15 : GGTA-CTGT-TACCGG-AG-AA-TA-----A-T---TTATTATTTTGCA--G-ATAAA--CTTGAGCA--TTTAACTTCG-A--ATTGTTAA
gi|16 : GGATTTCCATGGGCAAACTGCT-AGGGACTC--TTGCACGTTGGG-CGTG--A-CGTAAC----------CAAA--AAC-TCCA--CTAT-------atcctaat
gi|17 : gagggggg-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---C-A--TTTAACTTCG-A--
gi|2 : tAACACTTGATAGAGGGATGATT----GCGTAAACAACGCATACAT-GAGTGTTGATAAGGACAG---GGCCGTTTTT-GACAATTTCCTTGAAAATTGAAATCATAGCATTT-------GTTCACT---TA-C----CCCTGTTGTTGTTGCAGAAGTGTGCTATGGGGGCTT--GCATGTACAAAGGCCAGAGTTCCTGATCTACACT---------------GGGGTT-------------AGT--AAAATGGATATCATAGTCACGCCAGCCCCAACCAGGT---GAC-TTGCTAGCCCCCAAGCGAATTGTGTGCATAATATTTAAATAACGAAATGGCACATTCTGGATGTGCACCAGTAAAGATCGATACATAAAACAAGAA-ATAAATCAGTCCAGAACTTGAATATCTGTGATAGAATTTTGTTTTGATTTTTTTT-GTC--ATTGCTTAGGTTCCCATC-TTGAAGGA-AGACAAAAAT-AC-TTGGGTTGTCATCATCAGGTCTTGAAAAAA-TATTGCTTAATTTAG--CTAAATTAACATACTGCCACATATTGGGCAATTAGAAACTTTGG-T-----TTTATTGGGGCACATAGTTAGCCTAGGTCTAA-CTATAGCTTGGCGCTTGCCTAGGCGAGTAAATCTCGCCAACATGATCATTGAGTACAAAATCAACATCA---GCATTACCTGG--GGGAG---TATC-----CTCAGGAAT--GACGTTTGCCTCCATGGCCCGGACTGGGATGGGTCGCTCCGCTGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTAATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGCTATCCCCGACC------GTAGTGACGCTCGTGTTCTGTTCGGAATGTCCAGCCTCACTCAAGCCCTTCCTAGGAGTCCCTCTCTTTCGTCCCCTGGTCGGGGGCTGTGCTTCTC---T--TTTCGGCATTA-TGCAAATCCCGTATACCAAGTCCTCGGGCAAAATGCAAAGTA-ACAAGAATGCAATGTGTAGTGA---A-CTAGTCCAGTATGTACACAAATCCAAA-------------GCAACAAAGGCACCGAGAAAGTCAAATGCA--AG--TTTTTTGTTCCG-ATGT-GAACGAGGAAAATTTCACACGTCCT-ATCTCGTTGAAT--------------------GGGTCTC--TTGCACGGTGGG-CGTG--A-CGTAAC----------CAAA--GCC-CCCA--CTAT-------AGGG-TAA---C---T-AGTACCCGGAA-AG-TACCACGC-TAATA-G-GT-TTTAGT-AG-AC-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACTTCG-A--ta
gi|3 : gt-CAAAAATATAAATCAGTTCAGA-CTTGAATATCTGTGATAGATTTATGCTTTGATTTTTTCT--TC--ATTAAA-AGGTTCCCATC-TTGAAGGGAA-----AAAT-A--TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGCTTAACTTAG--CTAAATTAATATACTGCC---CATTGG-CAATTA-GAACTTTAG-T-----TTTATTGGG-CACATTGT-AGCCTGGGTATAAAAGGTAGCTTGGTGCTTGTGCAGGCGAGTAAATCTCGCCAACACGGTCATTGAGTACAAAATCAACATCA---GCATTACCTGG--AGAAG---TATC-----CTCAGAAAT--GACGTTTGCCTCCGTGGCCCGGACTGGGATGGAGCGCTCCGCCGAGTTTATCCCGGCCGCCATTCCCGCCGAAATGGCGTCAGTTATTTGTTTTAGTTGTTCATCGGTGAGGCGTGGGTTATCCACGACC------GTATTAACGCTCGTGCCCTGTTTGGAATGTCCAGCCTTAATCAAACTCTTCATAGGAATCCCTCTCTTTCGTCCTCTGGTCGGGGGATGTGCTTCTCTTTTTCTTTTTGCATAATTACAAATCCCGTATATCAAGTCCTCGTGCAAAATGCGAAGTGTACAAACATGCAATGAGTAACAA--TT-CTAGTCCGGTATGTACACAATTCCAAATAAATCAATAAATGTAACAAAAGCACCGAGAAA-TCAAATGCAACAG--TGTTTTGTTCCG-ATAT-GAACAAGAAA---TTCACACGTCAT-ACCTCTTTGAATTACCATGTGCGCACTGCT-GGGGACGCTTTTGCACGGTGGGTCGTG--ACCGTAAG----------CAAGTCGTC-CCCA--CTAT-------AAGGTTAG---CGTTT-A-CACCCGGAATAGTT---ACGCTTGA-A-T-AT-TTTCGG-AGCAA-TA-----A-T---T-TATATTTTGCTTTG-ATAAA--TC---G-ATTTTTCACTTCGAA--AGTATTAAtga
gi|4 : TGATAGATTTTTGCTTTGATTTTTTTTTGTC--ATTGCT-AAGTTCCCATC-TTGAATGG-A-----AAATTA--TTGGGT-GTCATCATCAGGGTCTGAAAAAC-TATTGCTTAATTTAG--CTAAATTAACATACTGCC---CATTGG-CAATTA-GAATTTTGA-T-----TTTATTGGG-CACATTGT-AGCCTAGATCTAAACTATAGCTTGACGCTTGCCCAGACGCATAAATCTCGCCAACATGATCATTGAGTAGAAAATCAACATCA---GTATTACCTGG--GGGAG---TATC-----CTCAGGATT--GACGGTTGCTTCCGTGGCCCGGACTGTGATGAGTTGCTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGAGATGGCGTCAGTTATTTGCTTGAGTTGTTCATCGGTGAGGCGTGGGTTATCCCTGACCGTGCATGTAGTGACGCTCGTGCCCTATTCGGAATGTACAGCCTCACTCAAGCTCTTCTTAGGAGTTCCTCTCGTTCGTCCCCT-TTCGGGG-------TTCTCTTTT--TTTCGGCATTA-TGCAAATACCATATACCAAGTCCTAGGGCAAAATGCAAAGTA-ACAAGAATGCAATGTGTAACAAACTAGTTAGTCCAGTATGTATACAAATCCAAATAAGTCAA-AAATGTAACAAAAGCACCGAGAAAGTCAAATGCAACAG--TTCTCTGTTCCG-ATGT-GAACGAGAAAAAATCCACACGTCCT-ATTTCGTTTAATTTCCATGTGTGAACTGCT-GGGACCAC--TTGCACGATGGA-CGTG--A-CGTAAC----------CAAAA-GAC-CCTA--CTAT-------AGGG-TAA---C---T-AATACCCGGAA-AG-T---AC------CA-C-GC--------AG-AG-TT-----A-T---T-GCTATTTAGCTTTG-ATAAA--CC---G-A--TTTAACatc
gi|5 : TAATGTAGGGGTGGTTTTGTGCATGAACAGGATATGCATTG--TGTTTATATCGACAATTTAACT-TATT---ACACTGCCCCTTGTGATTGAAATCATAACATTTAAGGAGCATTGGCTGAGTGGCGGAAGTCTG-GACGGTTG-----ATGTATTG--------T--ACATGTACAAGAGCCATAGCTCTTGGTCAACAACGGCGAATGAAAGAGAAGAGTAAGCCTCCTTTTTCAGCCAAAACTGAATGTCATAGTCACGCCATCGTA----AGGTTTGGACTCTGCTTGCCCCTAATCTAATAGTGTGAATA-TATTTGAATAATTCAATCCTGCTCCCGGGATGTGCTGGAGTATAAATAGAAGCATAAA-TGAGAA-AGACATCTGTCCAGT-TTTGTATATCGGCAAT-GACCTTGGCTTTGGTCTCGGGG-GCCAAATTA---AGGTTACCTTCTTTCAAGGT-G-----AAAT-GACTTGGG--ATCGACCCCA---TTTG---AAT-TTTCAATCAATATAGCCCTAAATTGATGTAATCCC---CAT-------TTA-AAATTTTGGATTTCAATTTATTATG-CACCATGT-GTCCCAAATCc
gi|6 : tgcaATACTTAATAGAGGGATGATT----ACGTGAACAATGCATGCAA-GAATGTTGATAAGGGCAG---AACT-TTTTT-GACAATTTCCCCTGAAATTGAAATCGTAGCATTT-------GTTGACT---TGGC----CCCCAGTACTATTGCTGGCGTGTGTTGTGGGGGCTTTTGCATGTACAAAAGCCATAGGTCCTGGTCAACACTAGCAAATGACATACTGGGGTTTTGTTTTTTCTTTAATCGAAAATGGATATCGTAGTCAGGCCAGCCCAAATCAGGT---GAC-CTGCTAGCCCTCAAGTGAATTGTGTGCATA-TATTTGAATAACGAAATGGCACATTCTGGATATGCACTAGTAAAAATTGATGCATAAA-CAAGAA-Aattg
gi|7 : CTGAATAGAGGGATGATT----GCGTGAACAACGCATGCAT-GAATGTTGATAAGGACAG---GACT-TCTTAAGACAATTTCCCTGGAAATTGAAACCATAGCATTT-------GTTTACT---TGGC----C------ACTGTTGCTGTGTTGTGCTAAGGGGGCTT--GCATGTACAGAAGTCAGAGTTCCTGATCAACACTAGCAAATGACATACTGGGGTTTTGTTCCATATTTAATCGAAAATGGATATCATAGTCACGCCAGCCCAAACCAGGT---GAC-CTGCTAGCCCCCAAGCGGATTGTGTGCATA-T
gi|8 : AACAG--TGTTTTGTTCCGGATATTGAAC---AAAAATTC-ACACGTCATTACCTCTTTGATTTACCATGTGCGCACTGCTTGGGGACGC--T-GCACGGTGGG-CGTG--A-CGTAAG----------CAAGT-GTCACCCA--CTAT-------AAGGTTAG---CT--T-ACCACCCGGAA-AG-T---ACGT-GGAAA-T-AT-TTTCGG-AG-AA-TA-----ATT---T-AATATTT-GCTTTG-ATAAATTCA---G-AT-TTTCACTTCGAA--AGTATTtc
gi|9 : TC-----CTCAGGATT--GACGGTTGCTTCCGTGGGCTGGACTGGGATGGGTCACTCCGCCGAGTTCATCCCGGCCGCCATGCCCGCCGCGATGGCGTCAGTTATATGTTTGAGTTGATCATCAGTGAGGCGTGGGTTATCCCCGACC------GTCGTGACGCTCGTGCCCTGTTCAGAATGTCCCGCTTCAATCGGGCCCTTCCTAAGGGGCCCTCTCTTCCATCCCCTGGtaaat