lowQualScore : 22222222222222222222 111111111111111111 111111111111111111111111 111111111111111111111111111111 111111
lowQualScore : 11 1 2222 1 00000000000000000000 2 111 1 11 11 2222222 2222222 1 55555555555555555555555 22222 11111111 1 1111 1 1 22 11111 222222222222222222 222 777777777777777777777777 111111111111111111111111111111 111111111 1111 33333333333333 1111111 1 22 1 111 33333333333333333333333333333333333333333 111 1111 11 000000 5555 33 1 1
lowQualScore : 33 0 1111 8 0 8 11 33333333333333333333 66 1 0 5 0 5 000 5 6 0 11 11 77 4444444 999 0000000 5 5 5 8 1 66666666666666666666666 5 66 66 5 555 11111 77777777 3 1 9999 5 5 66 88 4 8 55 0 3 4 5 55 4 11111 44 222222222222222222 000 3 44 555 666 6 44 777777777777777777777777 44 3 44 6 3 44 999 3 3 888888 2 444 6666 6666 2 000000000000000000000000000000 77 0 222222222 3 3 44 44 44 0000 3 3 3 3 3 6 3 1 555 44444444444444 3 666 4 5555555 55 0 1 4 4 11 4 4 1 55 3 111 77777777777777777777777777777777777777777 222 9999 66 4 11 333333 4444 11 3 0 3 55 3 3 666
lowQualScore : .. . .... . . . .. .................... .. . . . . . ... . . . .. .. .. ....... ... ....... . . . . . ....................... . .. .. . ... ..... ........ . . .... . . .. .. . . .. . . . . .. . ..... .. .................. ... . .. ... ... . .. ........................ .. . .. . . .. ... . . ...... . ... .... .... . .............................. .. . ......... . . .. .. .. .... . . . . . . . . ... .............. . ... . ....... .. . . . . .. . . . .. . ... ......................................... ... .... .. . .. ...... .... .. . . . .. . . ...
lowQualScore : 88 0 2222 0 6 0 44 44444444444444444444 99 2 4 0 4 0 000 0 5 0 99 99 44 3333333 333 2222222 7 0 7 6 4 99999999999999999999999 0 44 99 0 222 00000 44444444 0 4 8888 0 0 11 77 4 8 55 7 1 0 5 99 0 00000 66 999999999999999999 777 3 66 888 444 7 66 999999999999999999999999 66 3 66 9 3 66 777 1 1 222222 7 777 1111 1111 9 333333333333333333333333333333 88 7 333333333 1 1 66 22 66 4444 3 3 6 6 6 0 6 7 555 55555555555555 6 444 0 9999999 55 8 4 0 0 22 8 0 2 00 6 444 00000000000000000000000000000000000000000 222 8888 11 0 00 444444 7777 11 3 9 6 00 6 6 444
consensus : TAAACTTGTAAAG--ATGTCTTC-GTA----ATACTATCA-CTTTCAAAATACGAG-TTAAGAAAA-A-------------AAAAAA--AAAAGAGAAAAGAATCC-TTGTACTGGGACTT-CCTCATA-CATT-AA--AA--CTTTTTA-AAAA-------TATA--TATATA---AT-CGGGT-ATCGGGA-A-ATCAGTA--------TT-ACAATTACAC-GAAAAATTTA-CA-CCTTTT--TTCA-C-A-AATATCT--A--TGATTGG--AA----ATTTTTTA---ATG-CTGTC-AAATTT--CA-TTCA-TTATTTT-ATTT--GTTAGTT-TTGCTTT--CAACTGCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTTTACAT-T---AAAT-CA-CATGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CA--CAAA----G-------A----------GG--C-CTG--ACC-A--AGCAGA-N-G-TTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTCGC---------A-T-G--CT-GT--TT----TCC-G-TGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GTCT-N-------TAT-CTG---TAA-AA-G-----TCGC--CAAAAAGATAACATTCTAAAAATTC-CC-GAGGGAGTGTGCGCCCTTATTAAATCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--AA----AA-----------AA----AAGAAG--G-AAAAA---AGAAAA--T-TC--C-ATCA--CTTTCACTT------AATACAGTC---TACTGGCTGGACT-CC-T-AAGC--TT-TTT-T---CAAAA
Reference ( gi|2 ) : TAAACTTGTAAAG--ATGTCTTC-GTA----ATACTATCA-CTTTCAAAATACGGG-TTAAGAAAAAAAAAAAAAAAAAAAAAAAAA--AAAAGATAAAAAAATCC-TTGTACTGGGACTT-CCTCAAA-CATT-AA--AA--CTTTTTA-AAAA-------TATA--TATATA---AT-CGGGT-ATCGGGA-AGATCAGTA--------TT-ACAATTACACCGAAAAATTTA-CA-CCTTTT--TTCA-C-A-AATATCT--A--TGATTGG--AA----ATCTTTTA---ATG-CTGTC-AAATTT--CG-TTCA-TTATTTTTATTT--GTTAGTT-TTGCTTTT-CAACTGCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTTTACATGTCAAAAATATA-CATGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CA--CAA------------------------GG--C-CTG--ATC-A--AGCAGA-T-G-TTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTTGC---------A-T-G--CT-GT--TT----TCC-G-TGTA-TGTCA-GCA-GTGA-GACGTGT-G-GATTG-GTTT-T-------TAT-CTG---TAA-AA-A-----TCGC--CAAAAAGATAACATTCTAAAAAATT-CC-GAGGGAGTGTGCGCCCTTATTAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCCATTAA--AA----AA-----------AA----AAGAAGCTG-AAAAA---AGAAAA--T-TC--C-ATCA--CTTTCACTTCACTGGAATACAGTCCTGTACTGGCTGGACT-CC-T-AAGC--TT-TTT-T---CAAAA
gi|7 : TAAACTTGTAAAG--ATGTCTTTTGTA----ATACTATCAGCTTT-----TACGAG-TTAAGAA-------------------AAAA--AAAAGAGAAAAGAATCCCTTGTACTTGGACTT-CCTCATA-CTTT-AA--AAAACTTTTTA-AAAAA------TATA--TTTATA---A--CGGGTTATCGGGA-A-ATCAGTACATGTAGTTT-ACAAT-ACACGAAAAAATTTA-CAACCTTTT--TTCA-C-A-AATATCTA-A--TGATTGG---A----ATGTT------ATGACTGTCAAAATTT--CA-TTCA-TTATTTTTATTT--GTTAAGT-TTGA-TTT-CAACTGCATCT-CCCTTGTTCCAGTTAT--------------CGTT----------AAAT----------CGTAAA--C-GTTT--AAA-----AAC---AACAAAA-CA--GAAAATCTGGCGACAGATGCGTTCTG-GG--C-CTG--ACCAA--AGCAGA-G-G-TTG-TG------TAATAGTGCTT---ACTTT----GACCGTAGTCC-GGAA------------------------
gi|4 : AAATTGTAAAG--ATATCATT-GCA----ATACTATCA-CTTTCAAAATACGA--TTCAGA-----------------------A--AAAAGAGAAAAGAATCC-T-ATACTGGG-CTT-CCT-ATA-CATT-TA--AA--CTTTT-A-AAAA-------TATACATATATA---AT--AGGT-A-CTGGA-A-ATCAGTA--------TT-AC-------------------------CTTT--TTCA-C-A-AATATCT--AGATAAT--G--AATTGTATTTTTTA----TG-TTGTC-AAATTT--CA-TTCA-TTATTTTCATTG--ATGAGTT-T-GCTTT--CAACTGCTTCT-CTT---T--CAGTTATAATATTTT--CTGACGTTTACAT------------------ACGTAAATCC-GTTT--AAAA---CA-C---AACAAAA-CA--CAAAATCTGGCGACAGAAGCGTTCTG-GG--C-CTG--A-C-A--AGCATA-G-G-TTG-TG------T-ATAGTGCTT---TCTCA----GAC----GTCC-GGAATTTTTTTTTATAAATAGAAAAT--GCCA--TT-GTTC-C---------AGT-G--CTAGT--TTC---TCC-G-TG-A-T-TCAAGCAAGCAC-GGCGTGT-GCGATTG-GGTC-A-------T-T-CTG---ATA-AA-G-----TCGCACCAAAAAGATAACATTCTAAAA--TT-CCCGAGGGAGTGTGC-CCCTTAT-GAATCCGC-A-CTGACTACT--TCAATT-AATACCACCCGCCAA-AA--AA----AA-----------AA----AACAAA--A-AAAAAT--AGAAAA--A-TT--C-ATCA--CTT-CACTT------AATACAGTC---TACTGGCTG-ACT-CCCT-AAGC--TT-TTT-T---CAAAAtttttttttatagtaaagtgaatt
gi|15 : AACTTGTAAAG--ATGTCTTC-GTACGTAATACTATCA-CTT-CAAAATACGGG-T-----AAAGAAAA----------AAAAAA--AGAAGAGAAAAAAATC---TGTACTTGGACTT-CCTCAAA-CATTAAA--AA--CTTTTgct
gi|3 : TGTAAAACCATGTCTTC-GTA----ATACTATCA-CTT-CAAAATACGGGCTTAAGAAAAAA------------AAAAAAA--AGAAGA-GAAAAGATCC-TTGTAC-GGGACTTTCCTCAAAACATT-AA--AAA-CTTTTTA-AAAAAATATATTATA--TATATA----T-CGGTT-ATCGGAA-AGATCAGTAG-------TT-ACAATT-CAC-GAAAAATTTAACA-CCTTTT--TTCAACGA-AATATCT--AA-TGATTGG--AA----ATTTTTTA---TTG-CTGTC-AAATTT--CA-TTCA-TGATTTT-ATTT--CTGAGTTCTTGCTTT--CAACTACAT-T-CCT---TTCCAGTTATAATATTTT--CTGACGTTTACATGTAAAAAATACA-CATGTACGTAA--CC-GTTT--AAAA---CAAC---AACAAAA-CA--CAAAATGCGCACAGAA-----------GG--C-CTG--ACC-A--AGCAGA-T-G-TTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCT-GGAA------------------------GC-T--TT-GTTTGC---------A-T-G--CT-GT--TT----TCC-G-TGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GTCT-A-------TAT-CTG---TAA-AA-A-----TCGC--CAAAAAGATAACATTCTAAAAATTC-CC-GAGGGAGTGTGCG---------------C-CTCTGATTATT--TCAATT-AA---CACACGCCATT----AA----AA-----------AA----AAGAAGCTG-AAAAA---AAAAAA----TC--C-ATCA--CTTTCACTT------AATACAGTC---TACTGGCT-GACTCCC-T-AAGC--TT-TTT-T---CAAAAct
gi|20 : taaaaTCA-CTTTCAAAATACGAG-CTAAGAA--------------------AAA--AAAAG--AAACGAATTC-TTGTACTGGGACGT-TATCATA-CATTAAA--AA--CTTTATA-TATA-------TATA--TATATA---gctaa
gi|1 : AAGAAAGAAAACCAAAAGA-GAAAGAATCC-TAGTACTGGGACTT-CCT-ATA-C-TT-AACAAA--CTTTTTTTAAAA-------TACA--TATATAGATAT-AGGGT-A--AGGACAGCTC-GTA--------TTTACAATTACAC-GAAAAATTAA-CA-CCTTTA--TTCA-C-ACAATATCCTAA--TGATTGGTAAA----AT-TTTTA---TTG-CTGTC-AAATCTATCGATTCAGTTATTTCCATTTTGACTAGTT-T-GCTTTTTCAACTGCATCT-GCA---TTTCAGT-ATAATGCTTTGTTTGACGTTTAC-------------------TA-GTAA--CC-GTTTTTAAAA---CAAC---A-CAAAA-CA--CAAATATGGCACAGATACCGCGTTTGGGA--C-CTG--AAC-ACAAGCATA-G-G-TTGGTG------T-ATATGGCTT---T-TCGTCATGAC----GTCC-GGAATTTTTTTTTATAATTAGAGAAAATGC-A--TT-GTTCGC---------A-TTGACCT-AT--TT----CCG-G-TGTA-TGTCA-GCA-GCGA-GGCGTGT-G-GATTG-GTCTAT-------GATGCTG---TAA-AA-G-----TCAG--CAAAAAGATAACA-TCTAAAAACTTCCC-GAGGGAGTGT-CGCCCTTATAAATTCCGCACACTG-TTATT--TCAATTAAA---CACACGCCA--AA--AA----AA-----------AA----AAAAAG--G-AAAAG---AAAAAA--T-TCAGC-ATCAACCTGCCACTT------AATACAGTCTAACATCGGCT-GACTCCC-T-AAGC--TA-TTT-TATCCAAAta
gi|5 : actggagatgtcttatgcaatctatacctctacgagcttcAGAAAAAA--AAAAGAGAAAGAGATCC-TTGTACTGGGACTT--CTC-AA-C-TT-AA--AA--ATTTTT--AAAA-------TAT---TATATC---ATATGGGT-ATCGGGA-A---TAGTAT-------TT-ACAATTAAAC---GAAATTTA-CA-CTTTTTCATTGA-T-C-AATAT-T--A--TGATTG---------ATCTTT-----ATT-CTGTC--AATTT--CA-TT---TTA-TATTATTT--GTTAG-T-TTGCTTTC---ATAGCATCT-CCT---T--CGATTATAG-ATTTT--CCTGCGTTT-CA--TTAGAAA-ACA-C---TACG-AAT-TCAATTT--AAAA---C--C---AACAAAA-CA--AGAT-----------------------GA--CACCGAAAAA-A--AACAGAGT-G-TTG-T----------TAGTGC-T---TCTCG----GAC----G-AC-GG--------------------------GC-T--AT-ATTTAC---------A-T-G--CT--T--TT----CCC-G-TGTATTGTCA--CA-GCGA-CCCGTGTGG-GATTGCG--T-T-------TAT-CTG---TAA-AATA-----T-GC--C-ACAAGATAACATTCT-AAAAATT-CC-GAGGG---GTGGGCCCTTAGT-AATC--T-CTCTCATTATT--T-AATT-AA----ACACG--A-TAA--AATAACAA-----------AA----TAAAAG-TG-AAAAA---AGAAAA--T-TC--C-GTC---------CTTCAT---AATACAGT----TTCTGGCTA--------T-AAGC--TT-TTTGT---CAAAcaac
gi|16 : AAGAAA--AAAAGAGAAAAGAATCC-TTATACTGGGAAAT-CCTAATA-CATT-AAT-AA--CTTTTTA-A-------------------ATA---AT-CGGGT-ATCGGGA-ATAT--ATA--------T-------------GAAAAAGTTA-C--CCCTTT--TTCA-C-A-AATATgc
gi|8 : ctGGT-ATCGGGA-ATATCAGTA--------TT-NNNNNNNNNNNNNNNNNNNNN-NN-NNNNNN--NNNN-N-N-NNNNNNN--N--NNNNNNN--NN----NNNNNNNN---NNN-NNNNN-N---TT--CA-TTCA-TTATTT--ATTT--GT-AGTT-T-GCTTT--CAACTGCATCT-CCT---T-CCAGTTATA-TATTT---CTGATGTTTACATGT-AAAAATACAACATGTACGTAA--CC-TTTT--AAAA---CAAC---AACAAAAACA--CAAA-----------------------GG--G-CTG--ATC-A--A-CAGA-T-G-TTG-TG------T-A-AGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-G--TT--TTTGC---------A-T-G--CT-GC--TT----TCC-G-TGTA-TGTCA-GCA-GCGA-GACGTAT-G-GATTG-G-TG-C-------TAA-CTGTTTTAATAA-A-----TCGC--CAAAAAGATAACATTCTAAAAATTC-CC-AAATGAGTGTGCGCCCTTA-TAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGC
gi|6 : tcAAAAATTTA-CA-CCTTTT----CA-C-A-AAATTCT--AA-CGATTGG--AA----AT-TTTTATGTATG-CTGTC-AAATTT--CA-TTCA-TTATTTT-ATTT--GTTAGGT-TTGCTTT--CAACTGCATCT-CCT---T-CCAGTTATAATATTTT--CTGACGTTTACATAC--------TG-CATGCACGTAAC-GT-GTTT--AAAA---CAACTCTAGCGA---CA--GAA------------------------GG--C-CTG--ACC-A--AGCAGA-T-G-TTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCT-GGAATTTTTCATAAAAT-----------GC-AATTT-GGTTGC---------A-T-G--CT-GT--TT----TTCGG-TGTA-TGTC--GCA-GCGA-GACGTGT-G-GATTG-GTAC-TGTCGGTATAT-CTG---TAA-AA-AAAAATTCGC--CACAAACATAACATTCTAAAAATTC-CC-GAGGGAGTGTGCGCCCTTATTAAATCCGC-CACTGATTATTCATTATTT-AA---CACACGCCAT-----AA----AA-----------AA----AAGA------AAAAA---AGAAAAACTATC--C-ATCT--CTCTTACTT------ATTACAGTC---TACT-GCT-GACTCCC-T-AAGCTTTT-TTT-T---CAAA
gi|10 : atatacatgtatatt--A--TGATTGG--TA----ATTCTTTA----TG-CTGTC-AGATTT--TA-TTCA-TTATTTC-ATTT--GGTAGTT-T-GCTTTT--AACTGCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTTTACAT--------------ATGT-----AA-CC-ATTT--AAAA---CAAC---AACAAAA-CA--CAAATCTGGCGACCGAAGCATTCTG--GG--C-CTG--ACC-A--AGCAGA-G-G-TTG-TGTATATAT-ATAGTGTTTAAATCTCG----GAT----GTCC-GGAA------------------------
gi|9 : ctaTT--CA-TTCA-TCATTTT-ATTT--GTTA--T-TTGCTTT--CAACTGCATCTTCCT---TTCCAGTTATAATATTTT--CTGACGTTTACATGTAAAAAATACA-CATGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CA--CAA------------------------GG--C-CTG--ATC-A--AGCAGA-TGG-TTG-TG------T-ATA---CAT---TCTCttttttaatttatatacatttatagaaaatgcattgtttgcatgctgtattttccgtgtatgtcagcagcgagacg
gi|21 : ATTA--GTTAGTT-T-ACTTT--CAACTGTATTT-TCT---GTTCAGTTATAAAA---------ATGTT---AT-TC----ATTTA-CA--AACGTAAA--C-ATTT--AAAA---CAtcaccagagggcgcgtagtagttgagagaagcgcacggaccctggtagagaatggttgtgtatagtgctttctcgacgtccggaagcatgtttccgtgtatgtcagcagcgaggacgtgtggattgcgtctatattgta
gi|11 : ctgaTATTTT--TTGACGTTTACAT------------------ACGTAA--CA-GTTT--AAAA---CAAC---AACAAAA-CA--CAAATTTGGCGACATAAGCGTTCTG--GG--C-CTG--ACC-A--AGCAGA-G-G-TTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------T-----TT-TTTTATATATAGAAAA-T-G--CT-AT--TT----TTC-G-TGTA-TGTCA-GCA-GCGA-GACGTAT-G-GATTG-GTCT-A-------TAT-CTG---TAA-AG-G-----TCGC--AAATAAGATAACATTCTAAAAATTT-CC-GACGGAGTGTGCGCACTTA-TAAATCTGT-CACTGATTACT--TCAATT-AA---CACACG
gi|14 : TTTT--CTGACGTTTACAT------------------ACGTAA--CC-GTTT--AAGAATTTGGC---AACAGAAGCGTTCTG------------------------GG--T-CTG--ACC-A--AGCAGA-G-G-TTG-TG------T-ATAGTGCTT---TGTCA----GAC----GTCC-GGAA------------------------TT-A--TT--TTTAT---------A-T-
gi|9 : AAG-CG--CAC------------------------GGACC-CTG--GTA-G--AG--AA-T-GGTTG-TG------T-ATAGTGCTT---TCTCG-----AC----GTCC-GGAA------------------------GC-A--T---------------------------GT--TT-----CC-G-TGTA-TGTCA-GCA-GCGAGGACGTGT-G-GATTGCGTCT-A-------TAT--TG---TAatagaaaatgcattgttcgc
gi|19 : ttcattcatcattttatttgttatttgctttcaactgcatcttcctttccagttataatattttctgacgtttacatgtaaaaaatacacatgtacgtaaaccgtttaaaacaacaacaaaacacaaggcctgatcaagcagatggttgtgtatacattctctcaccagagggcgcgtagtagttgagag-TTG-TG------T-ATAGTGCTT---TTTCG----GAC----GTCT-GGGA------------------------T-----TT-TCTTAT---------A-T-A---T-AT--ATAAAATGC-ATTGTA-TGTCA-GCA-GCGA-G--------------------------------CCG---CAA-AA-----------------AAGATAACATTCT--AAAATT-CC-
gi|23 : ------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAATATTTTTATATATAGAAAAT----GC-G--TT-GTTCGC---------A-T-G--CT-AT--TT----TCC-G-Tcg
gi|12 : -ATAGTGCTT---TCTCA----GAC----GTCCCGGAATTTTTTAAAATAGAGAAGAT----GC-A--TTTGTTCGC---------A-T-G--CT-AT--TT----TCC-G-TGTA-TGTCA-GCA-GCGA-GGCGTGT---GATTG-GTCT-A-------TAT-CTG---TAA-AA-G-----TCGC--CAAAAAAAT-ACATTCTAAAAATTC-CC-AAGGGAGTGTG-GCCTCTA-TAAGTCCGC-C-ATGATTACT--TCAATT-AA---CACACGC----AA--AA----AA-----------AA----AA------------------AAAA--T-TC--CTATCAACCTTTCACTTT-----AATACAGT----TACTGGCT-GATC-CC-T-AAGC--TT-TTT-T---CAAAA
gi|10 : ------------------------GC-A--TT-GTTTGC---------A-T-G--CT-GTATTT----TCC-G-TGTA-TGTCA-GCA-GCGA-GACGgctaa
gi|13 : ctaatgattggtaattctttatgctgtcagattttattcattatttcatttggtagtttgcttttaactgcatctcctttccagttataatattttctgacgtttacatatgtaaccatttaaaacaacaacaaaacacaaatctggcgaccgaagcattctgggcctgaccaagcagaggttgtgtatatatatagtgtttaaatctcggatgtccggaattttttaatttatatacatttatagaaaat-------TAT-CTG---TAA-AA-A-----TCGC--CAAAAAGATAACATTCTAAAAATTC-CC-GAGGGAGTGTGCGCCCTTA-TAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCCATAAA--AA----AA-----------AAGGAGAAAAAGCTGAAAAAA---AGAAAA--------A-ATCA--CTTTCACTT------AATACAGTC---TACTGGCT-GACT-
gi|18 : CCCTTAT-AAATCCGC-CACTGATTACT--TCAAGT-AA---CACCCCCC--TAACCAA----CACCCCCCCCCCCAA----TAGAA---------------AAAA--T-CC--C-ATTA--CCTTCACTT------AATACAGTC---TACTGGCTGgcc
gi|17 : T--TCAATT-AATA-CACACGCCA--AA--AA----AA-----------AA----AAGAAAAAG-AAAAAGATAGAAAAA-T-TC--C-ATCA--CCTTCACTTCA-----ATACAGTC---TACTGGCTG-ACT-CCCT-AAGC--TT-TTT-T---CAAAAac
gi|25 : -ATCA--CTTTCACTT------AATACAGTT---TACTGGCT-GACTCCC-T-AAGT--TT-TTT-T---CCAAAgctaa
gi|27 : TACAGTC---TATTGGCTG-ACT-CC-CCAAGC--TTTTTT-T---CAAAAtgtta
gi|29 : CTGCACTGACT---CT-C--T-AAGC--TT-TTT-T---CAAAAgctaa
gi|30 : ACTGGCTG-ACT-CCCT-AAGC--TT-TTT-T---CAAAAtctaaact
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): ATTCCCTCAACGCCAGAGGGCGCGTTATGTAAGCTTCCCTTGGTGCGAGTAGCGCACGGAACTCTGGGTAGAGAATG
Unaligned ( gi|24 ): TCTCTCATCACCAGAGGGCGCGTTACGTAAGCTTAGTAGCGCACGGAACTCTGGGTAGAGAATG
Unaligned ( gi|26 ): ACTGCACTGACTCCGGCTCTAAGATTTTTTCAAAGGCTAAACTT
Unaligned ( gi|28 ): AAACATCAATGTATGCATGCAGTCAGTATGCGGATCAAA
Unaligned ( gi|31 ): TTCTCTTACCGCCAGAGGGCGCGTTGCGCAAGCTTC
Unaligned ( gi|32 ): GAGAGAAGCGCACGGAACTCTGGGTAGAGAATGGTG
Unaligned ( gi|33 ): TGCGAGTAGCGCATGGAACTCTGGGTAGAGAATG
Unaligned ( gi|34 ): TGCGAGTAGCGCATGGAACTCTGGGTAGAGAATG
Unaligned ( gi|35 ): TGAGAGAAGCGCACGGAACCCTGGGTAGAGAATG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 222222 1111111 11111111 1111111 11 11 111 1111111 1111111 2222 22222222 11111 1111111 11111 1 999999999999999999999 111 5555555555555555555555555555555555555555555555 111111 000000000000000000000000 111111111 11111111111 11 111 333333333333333333333333333333 11111 1111 11 111111 22 1
lowQualScore : 99 555555 5 0 44 5 77 6666666 22222222 0 4444444 4 4 3 5 4 4 55 00 4 000 6666666 777 3333333 5 3 5555 0 88888888 4 666 00 4 44 4 44 66 4 4 4 77777 1111111 77777 4 4 55 4 4 8 7 55 2 3 3 3 55 3 3 666 4 44 777777777777777777777 777 3 44 555 555 6 2 4444444444444444444444444444444444444444444444 3 3 222222 77 2 777777 2 444 5555 5555 2 000000000000000000000000 5555 66 00 3 555555555 44 33 44 3 3 3 3 3 3 3 3 55555555555 1 3 3 555 7 99999 55 3 2 77 3 1 44 3 000 99 55 8 4 000000000000000000000000000000 4 4 00000 2222 55 3 00 3 444444 555 555 33 8 3 3 3 44 3 3 555
lowQualScore : .. ...... . . .. . .. ....... ........ . ....... . . . . . . .. .. . ... ....... ... ....... . . .... . ........ . ... .. . .. . .. .. . . . ..... ....... ..... . . .. . . . . .. . . . . .. . . ... . .. ..................... ... . .. ... ... . . .............................................. . . ...... .. . ...... . ... .... .... . ........................ .... .. .. . ......... .. .. .. . . . . . . . . ........... . . . ... . ..... .. . . .. . . .. . ... .. .. . . .............................. . . ..... .... .. . .. . ...... ... ... .. . . . . .. . . ...
lowQualScore : 22 555555 7 1 44 7 99 2222222 88888888 8 4444444 4 4 9 1 4 8 00 66 4 444 2222222 000 5555555 0 2 1111 1 11111111 4 111 66 4 77 4 77 11 4 4 4 77777 8888888 00000 4 4 55 0 0 0 3 00 0 6 3 6 00 6 6 444 4 22 999999999999999999999 666 1 22 444 888 7 4 3333333333333333333333333333333333333333333333 3 3 999999 77 9 777777 5 444 7777 7777 7 666666666666666666666666 4444 55 77 1 444444444 22 88 22 1 1 3 3 3 3 6 6 55555555555 0 3 3 888 3 11111 00 6 5 66 6 0 66 3 444 55 55 0 0 666666666666666666666666666666 0 0 00000 9999 55 6 00 6 111111 888 444 55 5 3 3 3 66 3 3 888
consensus : TAAACTTGTAAAG--ATGTCTT----C-GTAATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAA-------AAAAAAAAAA--AGAGAAAAG-------AATCC-TTGTACTGGGACTT-CCTCATA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAA-A--TCAGTA--------TT-ACAATTACA-CG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATTTTT-TA-ATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGTT-TTGC-TTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTTTACAT-T---AAA----T--ACATGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAAA----G----------------G----------A-------------GGCCTGA-C-C------AAGCAGA-GGTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTCGCA-T---------G--CT-GT--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-C------TAT-AT-CTGT---AA-AAG-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--A-AA-A-----------AAA--AGAA------G--GA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTGGCT-GACTCC-C-T-AAGC--TT-TTT-T---CAAAA
Reference ( family-119 ) : TAAACTTGTAAAG--ATGTCTT----C-GTAATACTATCA-CTTTCAAAATACGAG-TT--AAGAAAA-------AAAAAAAAAA--AGAGAAAAG-------AATCC-TTGTACTGGGACTT-CCTCATA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAA-A--TCAGTA--------TT-ACAATTACA-CG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATTTTT-TA-ATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGTT-TTGC-TTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTTTACAT-T---AAA----T-CACATGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAAA---------------------G----------A-------------GGCCTGA-C-C------AAGCAGA-NGTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTCGCA-T---------G--CT-GT--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-C------TNT-AT-CTGT---AA-AAG-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--A-AA-A-----------AAA--AGAA------G--GA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTGGCTGGACT-C-C-T-AAGC--TT-TTT-T---CAAAA
gi|1 : AG--ATGTCTTA---T-GCAAT-CTAT-A-CCTC-----TACGAG-CTTCAAGAAAG-------AAAACCAAAA---GAGAAA-G-------AATCC-TAGTACTGGGACTT-CCT-ATA-C-TT--AACAAA-CTTTTT-TTAAAA-------TACA--TATATAGATAT-AGGG-TA--AGGAC-AGCTC-GTA--------TTTACAATTACA-CG-AAAAATTAA-C-ACCTTTA--TTCA-C-ACAATATCCTAA--TGATTGGTAA----AATTTT-TA-TTG-CTGTC-AAATCTATCGATTCAGTTA-TTTCCATTTTGACTAGTT-T-GC-TTTTTCAACT-GCATCT-GCA---TTTCAGT-ATAATGCTTTGTTTGACGTTTAC----------------------TA-GTAA--CC-GTTTTTAAAA---CAAC---A-CAAAA-CACAAATATGGCACAGATACCGCGTTTG----------G-------------GACCTGAACAC------AAGCATA-GGTTGGTG------T-ATATGGCTT---T-TCGTCATGAC----GTCC-GGAATTTTTTTTTATAATTAGAGAAAATGC-A--TT-GTTCGCA-TT--------GACCT-AT--TT-CCG-GTGTA-TGTCA-GCA-GCGA-GGCGTGT-G-GATTG-GT-C------TATGATGCTGT---AA-AAG-----TCAG--CAAAAAGATAACA-TCTAAAAACTTCCCGAGGGAGTGT-CGCCCTTATAAATTCCGCACACTG-TTATT--TCAATTAAA---CACACGCCA--AA--A-AA-A-----------AAA--AAAA------G--GA-AAAG-AAA-----AAA--T-TCAGC-ATCAACCTGCCAC-TT------AATACAGTC---TAACATCGGCT-GACTCC-C-T-AAGC--TA-TTT-TATCCAAA
gi|10 : actgg--A--TGATTGG-TA----ATTCTT-TA--TG-CTGTC-AGATTT--T-ATTCA-TTA-TTTC-ATTT--GGTAGTT-T-GC-TTT--TAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTTTACAT-----------------ATGT-----AA-CC-ATTT--AAAA---CAAC---AACAAAA-CACAAATCTGGC---------------G----------ACCGAAGCATTCTGGGCCTGA-C-C------AAGCAGA-GGTTG-TGTATATAT-ATAGTGTTTAAATCTCG----GAT----GTCC-GGAA------------------------caac
gi|10 : cta------------------------GC-A--TT-GTTTGCA-T---------G--CT-GTATTT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGttttttaatttatatacatttatagaaaatgcattgtttgcatgctgtattttccgtgtatgtcagcagcgagacg
gi|11 : ctaatgattggtaattctttatgctgtcagattttattcattatttcatttggtagtttgcttttaactgcatctcctttccagttataatattttctgacgtttacatatgtaaccatttaaaacaacaacaaaacacaaatctggcgaccgaagcattctgggcctgaccaagcagaggttgtgtatatatatagtgtttaaatctcggatgtccggaattttttaatttatatacatttatagaaaatTATTTT--TTGACGTTTACAT---------------------ACGTAA--CA-GTTT--AAAA---CAAC---AACAAAA-CACAAATTTGGC---------------G----------ACATAAGCGTTCTGGGCCTGA-C-C------AAGCAGA-GGTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------T-----TT-TTTTATA-TATAGAAAATG--CT-AT--TT-TTC-GTGTA-TGTCA-GCA-GCGA-GACGTAT-G-GATTG-GT-C------TAT-AT-CTGT---AA-AGG-----TCGC--AAATAAGATAACATTCTAAAAA-TTTCCGACGGAGTGTGCGCACTTA-TAAATCTGT-CACTGATTACT--TCAATT-AA---CACACG
gi|12 : -ATAGTGCTT---TCTCA----GAC----GTCCCGGAATTTTTTAAAATAGAGAAGAT----GC-A--TTTGTTCGCA-T---------G--CT-AT--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GGCGTGT-G--ATTG-GT-C------TAT-AT-CTGT---AA-AAG-----TCGC--CAAAAAAATA-CATTCTAAAAA-TTCCCAAGGGAGTGTG-GCCTCTAT-AAGTCCGC-CA-TGATTACT--TCAATT-AA---CACACGC-----A--A-AA-A-----------A----------------------AA-AAA-----AAA--T-TC--CTATCAACCTTTCACTTT------AATACAGT----T---ACTGGCT-GATC-C-C-T-AAGC--TT-TTT-T---CAAAA
gi|13 : T-AT-CTGT---AA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTA-TAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCCAT-AA--A-AA-A-----------AAAGGAGAAAAAGCTG--AA-AAAA-AGA-----AAA--------A-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTGGCT-GACT-gctaa
gi|14 : TTTT--CTGACGTTTACAT---------------------ACGTAA--CC-GTTT--AAGAATTTGGC---AACAGAAGCGTTCT---------------------G------------------------GGTCTGA-C-C------AAGCAGA-GGTTG-TG------T-ATAGTGCTT---TGTCA----GAC----GTCC-GGAA------------------------TT-A--TT-TTTgcc
gi|15 : AACTTGTAAAG--ATGTCTTCGTAC-GTAATACTATCA-C-TTCAAAATACGGG-TA--AAG-AAA-------AAAAAAAAGA--AGAGAAAAA-------AATC---TGTACTTGGACTT-CCTCAAA-CATTA-AA--AA-CTTTTatatatagaaaatgcattgttcgc
gi|16 : AAGAAAAAA--AGAGAAAAG-------AATCC-TTATACTGGGAAAT-CCTAATA-CATT--AAT-AA-CTTTTT-A-A-------------------ATA---AT-CGGG-TATCGGGAA--------TA----------------TATA-TG-AAAAAGTTA-C--CCCTTT--TTCA-C-A-AATATct
gi|17 : ctT--TCAATT-AATA-CACACGCCA--AA--A-AA-A-----------AAA--AGAA------A--AAGAAAA-AGATAGAAAAA--T-TC--C-ATCA--CCTTCAC-TTC-----AATACAGTC---T---ACTGGCT-GACTCC-C-T-AAGC--TT-TTT-T---CAAAA
gi|18 : CCCTTAT-AAATCCGC-CACTGATTACT--TCAAGT-AA---CACCCCCCT--AACCA-AC-ACCCCCCCCCCCAAT--AGAA-------------------A-----AAA--T-CC--C-ATTA--CCTTCAC-TT------AATACAGTC---T---ACTGGCTGgctaa
gi|19 : TTG-TG------T-ATAGTGCTT---TTTCG----GAC----GTCT-G---------------------------GG-A--TT--TTCTTA-T---------A-----------------TATA-TAT----------A-AA---AT-G-CATTG-----------TAT-GT-CAGC---AGCGAG-----CCGC--AAAAAAGATAACATTCT-AAAA-TTCCCGac
gi|2 : TAAACTTGTAAAG--ATGTCTT----C-GTAATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAGATAAAAAAATCC-TTGTACTGGGACTT-CCTCAAA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAAGA--TCAGTA--------TT-ACAATTACACCG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATCTTT-TA-ATG-CTGTC-AAATTT--C-GTTCA-TTATTTTT-ATTT--GTTAGTT-TTGCTTTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTTTACATGTCAAAAA----TATACATGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACA----------------------------------A-------------GGCCTGA-T-C------AAGCAGA-TGTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTTGCA-T---------G--CT-GT--TT-TCC-GTGTA-TGTCA-GCA-GTGA-GACGTGT-G-GATTG-GT-T------TTT-AT-CTGT---AA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-ATTCCGAGGGAGTGTGCGCCCTTATTAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCCATTAA--A-AA-A-----------AAA--AGAA------GCTGA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TTCACTGGAATACAGTCCTGT---ACTGGCTGGACT-C-C-T-AAGC--TT-TTT-T---CAAAA
gi|20 : TCA-CTTTCAAAATACGAG-CT--AAGAAAA-------AAAAA----------GAAACG-------AATTC-TTGTACTGGGACGT-TATCATA-CATTA-AA--AA-CTTTAT-A-TATA-------TATA--TATATA---
gi|21 : -ATTA--GTTAGTT-T-AC-TTT--CAACT-GTATTT-TCT---GTTCAGTTATAAAA---------ATGTT---AT-T---CAT----T-TACA--AACGTAAA--C-ATTT--AAAA---CAta
gi|23 : ctga------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAATATTTTTATATATAGAAAAT----GC-G--TT-GTTCGCA-T---------G--CT-AT--TT-TCC-GT
gi|25 : -ATCA--CTTTCAC-TT------AATACAGTT---T---ACTGGCT-GACTCC-C-T-AAGT--TT-TTT-T---CCAAA
gi|27 : TACAGTC---T---ATTGGCTG-ACT-C-C-CCAAGC--TTTTTT-T---CAAAAtgtta
gi|29 : GACT-CTC-T-AAGC--TT-TTT-T---CAAAAgctaa
gi|3 : ctgcactTGTAAAACCATGTCTT----C-GTAATACTATCA-CTT-CAAAATACGGGCTT--AAGAAAA-------AAAAAAAAAAGAAGAGAAAAG-------A-TCC-TTGTAC-GGGACTTTCCTCAAAACATT--AA--AAACTTTTT-A-AAAAAATATATTATA--TATATA----T-CGGT-TATCGGAAAGA--TCAGTAG-------TT-ACAATT-CA-CG-AAAAATTTAAC-ACCTTTT--TTCAACGA-AATATCT--AA-TGATTGG-AA----ATTTTT-TA-TTG-CTGTC-AAATTT--C-ATTCA-TGA-TTTT-ATTT--CTGAGTTCTTGC-TTT--CAACT-ACAT-T-CCT---TTCCAGTTATAATATTTT--CTGACGTTTACATGT---AAAAAA-TACACATGTACGTAA--CC-GTTT--AAAA---CAAC---AACAAAA-CACAAA---------------------ATGCGCACAGAA-------------GGCCTGA-C-C------AAGCAGA-TGTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCT-GGAA------------------------GC-T--TT-GTTTGCA-T---------G--CT-GT--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-C------TAT-AT-CTGT---AA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTG---------------CGC-CTCTGATTATT--TCAATT-AA---CACACGCCA--TT--A-AA-A-----------AAA--AGAA------GCTGA-AAAA-AAA-----AAA----TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTGGCT-GACTCC-C-T-AAGC--TT-TTT-T---CAAAAtctaaact
gi|30 : taaaa---ACTGGCTG-ACT-C-CCT-AAGC--TT-TTT-T---CAAAAgctaa
gi|4 : AAATTGTAAAG--ATATCAT----T-GCAATACTATCA-CTTTCAAAATACGA--TT--CAGAAAA-------AA-----------GAGAAAAG-------AATCC-T-ATACTGGG-CTT-CCT-ATA-CATT--TA--AA-CTTTT--A-AAAA-------TATACATATATA---AT--AGG-TA-CTGGAA-A--TCAGTA--------TT-AC--------------------------CTTT--TTCA-C-A-AATATCT--AGATAAT--G-AATTGTATTTTT-TA--TG-TTGTC-AAATTT--C-ATTCA-TTA-TTTTCATTG--ATGAGTT-T-GC-TTT--CAACT-GCTTCT-CTT---T--CAGTTATAATATTTT--CTGACGTTTACAT---------------------ACGTAAATCC-GTTT--AAAA---CA-C---AACAAAA-CACAAAATCTGGCGACA----------G----------AAGCGTTCTG----GGCCTGA-C--------AAGCATA-GGTTG-TG------T-ATAGTGCTT---TCTCA----GAC----GTCC-GGAATTTTTTTTTATAAATAGAAAAT--GCCA--TT-GTTC-CAGT---------G--CTAGT--TTCTCC-GTG-A-T-TCAAGCAAGCAC-GGCGTGT-GCGATTG-GG-T------CAT--T-CTGA---TA-AAG-----TCGCACCAAAAAGATAACATTCTAAAA--TTCCCGAGGGAGTGTGC-CCCTTAT-GAATCCGC--ACTGACTACT--TCAATT-AATACCACCCGCCA--AA--AAAA-A-----------AAA--ACAA------A--AA-AAAATAGA-----AAA--A-TT--C-ATCA--C-TTCAC-TT------AATACAGTC---T---ACTGGCT-GACTCC-C-T-AAGC--TT-TTT-T---CAAAAcgctaaa
gi|5 : A-------GAAAAAAAAA--AGAGAAAGA-------GATCC-TTGTACTGGGACTT--CTCA-A-C-TT--AA--AA-ATTTTT---AAAA-------TAT---TATATC---ATATGGG-TATCGGGAA-----TAGTAT-------TT-ACAATTAAA-CG---AAATTTA-C-ACTTTTTCATTGA-T-C-AATAT-T--A--TGATTG--------ATCTTT----ATT-CTGTC--AATTT--C-ATT---TTA-TATT-ATTT--GTTAG-T-TTGC-TTT--CA--TAGCATCT-CCT---T--CGATTATAG-ATTTT--CCTGCGTTT-CAT-T---AGA----A-AACAC-TACG-AAT-TCAATTT--AAAA---C--C---AACAAAA-C---AA---------------------G----------A-------------TGAC--A-C-CGAAAAAAAACAGAGTGTTG-T----------TAGTGC-T---TCTCG----GAC----G-AC-GG--------------------------GC-T--AT-ATTTACA-T---------G--CT--T--TT-CCC-GTGTATTGTCA--CA-GCGA-CCCGTGTGG-GATTG----CG-----TTT-AT-CTGT---AA-AAT-----ATGC--C-ACAAGATAACATTCTAAAAA-TT-CCGAGGG---GTGGGCCCTTAGT-AATC--T-CTCTCATTATT--T-AATT-AA----ACACGATA--AA--ATAACA-----------AAAT-AAAA------GT-GA-AAAA-AGA-----AAA--T-TC--C-GT----CCTTCA---T------AATACAGTT---T----CTGGCTA---------T-AAGC--TT-TTTGT---CAAAgct
gi|6 : T-ACATGTATA-TT-AAAAATTTA-C-ACCTTTT----CA-C-A-AAATTCT--AA-CGATTGG-AA----ATTTTTATGTATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGGT-TTGC-TTT--CAACT-GCATCT-CC----TTCCAGTTATAATATTTT--CTGACGTTTACAT-------A----C-TGCATGCACGTAAC-GT-GTTT--AAAA---CAACTCTAGCG-----ACAGA--------------------------------A-------------GGCCTGA-C-C------AAGCAGA-TGTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCT-GGAATTTTTCATAAAAT-----------GC-AATTT-GGTTGCA-T---------G--CT-GT--TT-TTCGGTGTA-TGTC--GCA-GCGA-GACGTGT-G-GATTG-GTACTGTCGGTAT-AT-CTGT---AA-AAAAAAATTCGC--CACAAACATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CACTGATTATTCATTATTT-AA---CACACGCCA--TA--A-AA-A-----------A------AA------G--AA-AAAA-AGA-----AAAACTATC--C-ATCT--CTCTTAC-TT------ATTACAGTC---T---ACT-GCT-GACTCC-C-T-AAGCTTTT-TTT-T---CAAAgc
gi|7 : ataTAAACTTGTAAAG--ATGTCTT----TTGTAATACTATCAGCTTT-----TACGAG-TT--AAGAAAA-------AAAAAA-------GAGAAAAG-------AATCCCTTGTACTTGGACTT-CCTCATA-CTTTAAAA--AA-CTTTTTAA-AAAA-------TATA--TTTATA---A--CGGGTTATCGGGAA-A--TCAGTACATGTAGTTT-ACAA-TACA-CGAAAAAATTTA-CAACCTTTT--TTCA-C-A-AATATCTA-A--TGATTGG--A----ATGTT-----ATGACTGTCAAAATTT--C-ATTCA-TTATTTTT-ATTT--GTTAAGT-TTGA-TTT--CAACT-GCATCT-CCCTTGTTCCAGTTAT--------------------CGT-T---AAA----T---------CGTAAA--C-GTTT--AAA-----AAC---AACAAAA-CAGAAAATCTGGC--------------G----------ACAGATGCGTTCTGGGCCTGA-C-CA-----AAGCAGA-GGTTG-TG------TAATAGTGCTT---ACTTT----GACCGTAGTCC-GGAA------------------------
gi|8 : GG-TATCGGGAATA--TCAGTA--------TT-NNNNNNNNN-NN-NNNNNNNNN-N-NNNNNNN--NNNN-N-N-NNNNNNN--N--NNNNNNN-NN----NNNNNN-NN-NNN-NNNNN-NN--TT--C-ATTCA-TTA-TTT--ATTT--GT-AGTT-T-GC-TTT--CAACT-GCATCT-CCT---T-CCAGTTATA-TATTT---CTGATGTTTACATGT---AAAAATAC-AACATGTACGTAA--CC-TTTT--AAAA---CAAC---AACAAAAACACAAA---------------------G----------G-------------G--CTGA-T-C------AA-CAGA-TGTTG-TG------T-A-AGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-G--TT--TTTGCA-T---------G--CT-GC--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGTAT-G-GATTG-GT-G-------CT-AA-CTGTTTTAATAAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCAAATGAGTGTGCGCCCTTA-TAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCtttttttttatagtaaagtgaatt
gi|9 : tcTT--C-ATTCA-TCA-TTTT-ATTT--GTTA--T-TTGC-TTT--CAACT-GCATCTTCCT---TTCCAGTTATAATATTTT--CTGACGTTTACATGT---AAAAAA-TACACATGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACA----------------------------------A-------------GGCCTGA-T-C------AAGCAGATGGTTG-TG------T-ATA---CAT---TCTC
gi|9 : GTTG-TG------T-ATAGTGCTT---TCTCG-----AC----GTCC-GGAA------------------------GC-A--T--------------------------GT--TT--CC-GTGTA-TGTCA-GCA-GCGAGGACGTGT-G-GATTGCGT-C------TAT-AT--TGT---Atcaccagagggcgcgtagtagttgagagaagcgcacggaccctggtagagaatggttgtgtatagtgctttctcgacgtccggaagcatgtttccgtgtatgtcagcagcgaggacgtgtggattgcgtctatattgta
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTCCCTCAACGCCAGAGGGCGCGTTATGTAAGCTTCCCTTGGTGCGAGTAGCGCACGGAACTCTGGGTAGAGAATG
Unaligned ( gi|24 ): TCTCTCATCACCAGAGGGCGCGTTACGTAAGCTTAGTAGCGCACGGAACTCTGGGTAGAGAATG
Unaligned ( gi|26 ): ACTGCACTGACTCCGGCTCTAAGATTTTTTCAAAGGCTAAACTT
Unaligned ( gi|28 ): AAACATCAATGTATGCATGCAGTCAGTATGCGGATCAAA
Unaligned ( gi|31 ): TTCTCTTACCGCCAGAGGGCGCGTTGCGCAAGCTTC
Unaligned ( gi|32 ): GAGAGAAGCGCACGGAACTCTGGGTAGAGAATGGTG
Unaligned ( gi|33 ): TGCGAGTAGCGCATGGAACTCTGGGTAGAGAATG
Unaligned ( gi|34 ): TGCGAGTAGCGCATGGAACTCTGGGTAGAGAATG
Unaligned ( gi|35 ): TGAGAGAAGCGCACGGAACCCTGGGTAGAGAATG
Alignments
lowQualScore : 1111111111111111111111111111111111111111 111111111111111111111111111111
lowQualScore : 111 1111 11 1111111 11111111 1111111 11 11 111 1111111 1111111 2222 22222222 11111 1111111 11111 1 9999999999999999999999999 111 4444444444444444444444444444444444444444 000000000000000000000000000000 111111111 11111111 11 111 333333333333333333333333333333 11111 1111 11 111111
lowQualScore : 99 111 4444 5 11 5 77 6666666 22222222 0 4444444 4 4 3 5 4 4 55 00 4 000 6666666 777 3333333 5 3 5555 0 88888888 4 666 00 4 44 4 44 66 4 4 4 77777 1111111 77777 4 4 55 4 4 8 7 55 2 3 3 3 55 3 3 666 4 44 3 44 2222222222222222222222222 777 3 44 555 555 6 8888888888888888888888888888888888888888 44 3 3 3 333 2 777777 2 444 5555 5555 2 111111111111111111111111111111 66 00 3 555555555 44 33 44 3 3 3 3 3 3 3 3 7 44444444 44 3 3 7 99999 55 3 2 77 3 1 44 3 000 99 55 8 4 000000000000000000000000000000 4 4 00000 2222 55 3 00 3 444444 555 555 2 2 6666 77 3 555
lowQualScore : .. ... .... . .. . .. ....... ........ . ....... . . . . . . .. .. . ... ....... ... ....... . . .... . ........ . ... .. . .. . .. .. . . . ..... ....... ..... . . .. . . . . .. . . . . .. . . ... . .. . .. ......................... ... . .. ... ... . ........................................ .. . . . ... . ...... . ... .... .... . .............................. .. .. . ......... .. .. .. . . . . . . . . . ........ .. . . . ..... .. . . .. . . .. . ... .. .. . . .............................. . . ..... .... .. . .. . ...... ... ... . . .... .. . ...
lowQualScore : 22 333 2222 7 44 7 99 2222222 88888888 8 4444444 4 4 9 1 4 8 00 66 4 444 2222222 000 5555555 0 2 1111 1 11111111 4 111 66 4 77 4 77 11 4 4 4 77777 8888888 00000 4 4 55 0 0 0 3 00 0 6 3 6 00 6 6 444 4 22 1 22 1111111111111111111111111 666 1 22 444 888 7 9999999999999999999999999999999999999999 66 3 3 3 888 9 777777 5 444 7777 7777 7 333333333333333333333333333333 55 77 1 444444444 22 88 22 1 1 3 3 3 3 6 6 3 44444444 66 3 3 3 11111 00 6 5 66 6 0 66 3 444 55 55 0 0 666666666666666666666666666666 0 0 00000 9999 55 6 00 6 111111 888 000 9 7 1111 33 1 444
consensus : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAA-------AAAAAAAAAA--AGAGAAAAG-------AATCC-TTGTACTGGGACTT-CCTCATA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAA-A--TCAGTA--------TT-ACAATTACA-CG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATTTTT-TA-ATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGTT-TTGC-TTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T-TA-A----A-----TACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAAA-----------------G---G---------------GGGCCTG--A-C-C-AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTCGCA-T---------G--CT-GT--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-C------TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--A-AA-A-----------AAA--AGAA------G--GA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
Reference ( family-119 ) : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAA-------AAAAAAAAAA--AGAGAAAAG-------AATCC-TTGTACTGGGACTT-CCTCATA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAA-A--TCAGTA--------TT-ACAATTACA-CG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATTTTT-TA-ATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGTT-TTGC-TTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T-TA-A----A-----TACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAAA-----------------G---G---------------AGGCCTG--A-C-C-AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTCGCA-T---------G--CT-GT--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-C------TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--A-AA-A-----------AAA--AGAA------G--GA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
gi|1 : AG--ATGTCTTAT-GCA----AT-CTAT-A-CCTC-----TACGAG-CTTCAAGAAAG-------AAAACCAAAA---GAGAAA-G-------AATCC-TAGTACTGGGACTT-CCT-ATA-C-TT--AACAAA-CTTTTT-TTAAAA-------TACA--TATATAGATAT-AGGG-TA--AGGAC-AGCTC-GTA--------TTTACAATTACA-CG-AAAAATTAA-C-ACCTTTA--TTCA-C-ACAATATCCTAA--TGATTGGTAA----AATTTT-TA-TTG-CTGTC-AAATCTATCGATTCAGTTA-TTTCCATTTTGACTAGTT-T-GC-TTTTTCAACT-GCATCT-GCA---TTTCAGT-ATAATGCTTTGTTTGACGTT-TAC----------------------------TA-GTAA--CC-GTTTTTAAAA---CAAC---A-CAAAA-CACAAATATGGCACAGATACCGCGTTTG---------------GGACCTG--AACAC-AAGCATA-G-GTTGGTG------T-ATATGGCTT---T-TCGTCATGAC----GTCC-GGAATTTTTTTTTATAATTAGAGAAAATGC-A--TT-GTTCGCA-TT--------GACCT-AT--TT-CCG-GTGTA-TGTCA-GCA-GCGA-GGCGTGT-G-GATTG-GT-C------TA--TGATGCTGTAA-AAG-----TCAG--CAAAAAGATAACA-TCTAAAAACTTCCCGAGGGAGTGT-CGCCCTTATAAATTCCGCACACTG-TTATT--TCAATTAAA---CACACGCCA--AA--A-AA-A-----------AAA--AAAA------G--GA-AAAG-AAA-----AAA--T-TCAGC-ATCAACCTGCCAC-TT------AATACAGTC---TAACATCG-GCT-GACTCC----CTAAGC--TATTT-TATCCAAA
gi|10 : actgg--A--TGATTGG-TA----ATTCTT-TA--TG-CTGTC-AGATTT--T-ATTCA-TTA-TTTC-ATTT--GGTAGTT-T-GC-TTT--TAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T------------------A---TGT-----AA-CC-ATTT--AAAA---CAAC---AACAAAA-CACAAATCT--------------G---GCGACCGAAGCATTCTGGGCCTG--A-C-C-AAGCAGA-G-GTTG-TGTATATAT-ATAGTGTTTAAATCTCG----GAT----GTCC-GGAA------------------------caac
gi|10 : cta------------------------GC-A--TT-GTTTGCA-T---------G--CT-GTATTT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGttttttaatttatatacatttatagaaaatgcattgtttgcatgctgtattttccgtgtatgtcagcagcgagacg
gi|11 : ctaatgattggtaattctttatgctgtcagattttattcattatttcatttggtagtttgcttttaactgcatctcctttccagttataatattttctgacgtttacatatgtaaccatttaaaacaacaacaaaacacaaatctggcgaccgaagcattctgggcctgaccaagcagaggttgtgtatatatatagtgtttaaatctcggatgtccggaattttttaatttatatacatttatagaaaatTATTTT--TTGACGTT-TACA--T-------------------------ACGTAA--CA-GTTT--AAAA---CAAC---AACAAAA-CACAAATTT--------------G---GCGACATAAGCGTTCTGGGCCTG--A-C-C-AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------T-----TT-TTTTATA-TATAGAAAATG--CT-AT--TT-TTC-GTGTA-TGTCA-GCA-GCGA-GACGTAT-G-GATTG-GT-C------TA--T-AT-CTGTAA-AGG-----TCGC--AAATAAGATAACATTCTAAAAA-TTTCCGACGGAGTGTGCGCACTTA-TAAATCTGT-CACTGATTACT--TCAATT-AA---CACACG
gi|12 : -ATAGTGCTT---TCTCA----GAC----GTCCCGGAATTTTTTAAAATAGAGAAGAT----GC-A--TTTGTTCGCA-T---------G--CT-AT--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GGCGTGT-G--ATTG-GT-C------TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAAATA-CATTCTAAAAA-TTCCCAAGGGAGTGTG-GCCTCTAT-AAGTCCGC-CA-TGATTACT--TCAATT-AA---CACACGC-----A--A-AA-A-----------A----------------------AA-AAA-----AAA--T-TC--CTATCAACCTTTCACTTT------AATACAGT----T---ACTG-GCT-GA-TCC----CTAAGC--TTTTT-T---CAAAA
gi|13 : --T-AT-CTGTAA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTA-TAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCCAT-AA--A-AA-A-----------AAAGGAGAAAAAGCTG--AA-AAAA-AGA-----AAA--------A-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTGC----Cgctaa
gi|14 : TTTT--CTGACGTT-TACA--T-------------------------ACGTAA--CC-GTTT--AAGAATTTGGC---AACAGAAGCGTTCT-----------------G---G-----------------GTCTG--A-C-C-AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TGTCA----GAC----GTCC-GGAA------------------------TT-A--TT-TTT
gi|15 : AACTTGTAAAG--ATGTCTT-C-GTACGTAATACTATCA-CTT-CAAAATACGGG-TA--AAG-AAA-------AAAAAAAAGA--AGAGAAAAA-------AATC---TGTACTTGGACTT-CCTCAAA-CATTA-AA--AA-CTTTTatatatagaaaatgcattgttcgc
gi|16 : AAGAAAAAA--AGAGAAAAG-------AATCC-TTATACTGGGAAAT-CCTAATA-CATT--AAT-AA-CTTTTT-A-A-------------------ATA---AT-CGGG-TATCGGGAA--------TA----------------TATA-TG-AAAAAGTTA-C--CCCTTT--TTCA-C-A-AATATct
gi|17 : ctT--TCAATT-AATA-CACACGCCA--AA--A-AA-A-----------AAA--AGAA------A--AAGAAAA-AGATAGAAAAA--T-TC--C-ATCA--CCTTCAC-TTC-----AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
gi|18 : CCCTTAT-AAATCCGC-CACTGATTACT--TCAAGT-AA---CACCCCCCT--AACCA-AC-ACCCCCCCCCCCAAT--AGAA-------------------A-----AAA--T-CC--C-ATTA--CCTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACgctaa
gi|19 : TTG-TG------T-ATAGTGCTT---TTTCG----GAC----GTCT-GGGA------------------------------TT--TTCTTA-T---------A-----------------TATA-TAT----------A-AA---AT-G-CATTG-----------TA--T-GT-CAGCAGCGAG-----CCGC--AAAAAAGATAACATTCT-AAAA-TTCCCG
gi|2 : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAGATAAAAAAATCC-TTGTACTGGGACTT-CCTCAAA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAAGA--TCAGTA--------TT-ACAATTACACCG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATCTTT-TA-ATG-CTGTC-AAATTT--C-GTTCA-TTATTTTT-ATTT--GTTAGTT-TTGCTTTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACATGT-CA-AAAATA-----TACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACA---------------------------------------AGGCCTG--A-T-C-AAGCAGA-T-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTTGCA-T---------G--CT-GT--TT-TCC-GTGTA-TGTCA-GCA-GTGA-GACGTGT-G-GATTG-GT-T------TT--T-AT-CTGTAA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-ATTCCGAGGGAGTGTGCGCCCTTATTAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCCATTAA--A-AA-A-----------AAA--AGAA------GCTGA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TTCACTGGAATACAGTCCTGT---ACTG-GCTGGACT-C----CTAAGC--TTTTT-T---CAAAA
gi|20 : TCA-CTTTCAAAATACGAG-CT--AAGAAAA-------AAAAA----------GAAACG-------AATTC-TTGTACTGGGACGT-TATCATA-CATTA-AA--AA-CTTTAT-A-TATA-------TATA--TATATA---
gi|21 : -ATTA--GTTAGTT-T-AC-TTT--CAACT-GTATTT-TCT---GTTCAGTTATAAAA---------ATGTTATTCA--T-T-------------TACA-----AACGTAAA--C-ATTT--AAAA---CAta
gi|23 : ctga------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAATATTTTTATATATAGAAAAT----GC-G--TT-GTTCGCA-T---------G--CT-AT--TT-TCC-GT
gi|25 : -ATCA--CTTTCAC-TT------AATACAGTT---T---ACTG-GCT-GACTCC----CTAAGT--TTTTT-T---CCAAA
gi|26 : ---ACTGCACT-GACTCCGGCTCTAAGA--TTTTT-T---CAAAtgtta
gi|27 : TACAGTC---T---ATTG-GCT-GACTCC----CCAAGCT-TTTTT-T---CAAAAggctaaactt
gi|29 : CT-GACTCT----CTAAGC--TTTTT-T---CAAAAgctaa
gi|3 : ctgcaTGTAAAACCATGTCTT-C-GTA----ATACTATCA-CTT-CAAAATACGGGCTT--AAGAAAA-------AAAAAAAAAAGAAGAGAAAAG-------A-TCC-TTGTAC-GGGACTTTCCTCAAAACATT--AA--AAACTTTTT-A-AAAAAATATATTATA--TATATA----T-CGGT-TATCGGAAAGA--TCAGTAG-------TT-ACAATT-CA-CG-AAAAATTTAAC-ACCTTTT--TTCAACGA-AATATCT--AA-TGATTGG-AA----ATTTTT-TA-TTG-CTGTC-AAATTT--C-ATTCA-TGA-TTTT-ATTT--CTGAGTTCTTGC-TTT--CAACT-ACAT-T-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--TGTA-A----AAAATACACA---TGTACGTAA--CC-GTTT--AAAA---CAAC---AACAAAA-CACAAAATGCGCACA--------G---A---------------AGGCCTG--A-C-C-AAGCAGA-T-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCT-GGAA------------------------GC-T--TT-GTTTGCA-T---------G--CT-GT--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-C------TA--T-AT-CTGTAA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTG---------------CGC-CTCTGATTATT--TCAATT-AA---CACACGCCA--TT--A-AA-A-----------AAA--AGAA------GCTGA-AAAA-AAA-----AAA----TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAAtctaaact
gi|30 : taaaa---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAAgctaa
gi|4 : AAATTGTAAAG--ATATCAT-T-GCA----ATACTATCA-CTTTCAAAATACGA--TT--CAGAAAA-------AA-----------GAGAAAAG-------AATCC-T-ATACTGGG-CTT-CCT-ATA-CATT--TA--AA-CTTTT--A-AAAA-------TATACATATATA---AT--AGG-TA-CTGGAA-A--TCAGTA--------TT-AC--------------------------CTTT--TTCA-C-A-AATATCT--AGATAAT--G-AATTGTATTTTT-TA--TG-TTGTC-AAATTT--C-ATTCA-TTA-TTTTCATTG--ATGAGTT-T-GC-TTT--CAACT-GCTTCT-CTT---T--CAGTTATAATATTTT--CTGACGTT-TACA--T-------------------------ACGTAAATCC-GTTT--AAAA---CA-C---AACAAAA-CACAAAATCT-------------G---GCGACAGAAGCGTTCTGGGCCTG--A-C---AAGCATA-G-GTTG-TG------T-ATAGTGCTT---TCTCA----GAC----GTCC-GGAATTTTTTTTTATAAATAGAAAAT--GCCA--TT-GTTC-CAGT---------G--CTAGT--TTCTCC-GTG-A-T-TCAAGCAAGCAC-GGCGTGT-GCGATTG-GG-T------CA--T--T-CTGATA-AAG-----TCGCACCAAAAAGATAACATTCTAAAA--TTCCCGAGGGAGTGTGC-CCCTTAT-GAATCCGC--ACTGACTACT--TCAATT-AATACCACCCGCCA--AA--AAAA-A-----------AAA--ACAA------A--AA-AAAATAGA-----AAA--A-TT--C-ATCA--C-TTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAAcgctaaa
gi|5 : A-------GAAAAAAAAA--AGAGAAAGA-------GATCC-TTGTACTGGGACTT--CTCA-A-C-TT--AA--AA-ATTTTT---AAAA-------TAT---TATATC---ATATGGG-TATCGGGAA-----TAGTAT-------TT-ACAATTAAA-CG---AAATTTA-C-ACTTTTTCATTGA-T-C-AATAT-T--A--TGATTG--------ATCTTT----ATT-CTGTC--AATTT--C-ATT---TTA-TATT-ATTT--GTTAG-T-TTGC-TTT--CA--TAGCATCT-CCT---T--CGATTATAG-ATTTT--CCTGCGTT-T-CA--T-TAGA----A-----AACA---C-TACG-AAT-TCAATTT--AAAA---C--C---AACAAAA-CA-AGA-----------------T---G---------------ACACC-GAAA-A-A-AAACAGA-GTGTTG-T----------TAGTGC-T---TCTCG----GAC----G-AC-GG--------------------------GC-T--AT-ATTTACA-T---------G--CT--T--TT-CCC-GTGTATTGTCA--CA-GCGA-CCCGTGTGG-GATTGCGT-T----------T-AT-CTGTAA-AAT-----ATGC--C-ACAAGATAACATTCTAAAAA-TT-CCGAGGG---GTGGGCCCTTAGT-AATC--T-CTCTCATTATT--T-AATT-AA----ACACGATA--AA--ATAACA-----------AAAT-AAAA------GT-GA-AAAA-AGA-----AAA--T-TC--C-GT----CCTTCA---T------AATACAGTT---T----CTG-GCT-A----------TAAGC--TTTTTGT---CAAAgct
gi|6 : T-ACATGTATA-TT-AAAAATTTA-C-ACCTTTT----CA-C-A-AAATTCT--AA-CGATTGG-AA----ATTTTTATGTATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGGT-TTGC-TTT--CAACT-GCATCT-CC----TTCCAGTTATAATATTTT--CTGACGTT-TACA--T----A----C-----TGCA---TGCACGTAAC-GT-GTTT--AAAA---CAACTCTAGC--GA-C----A-----------------G---A---------------AGGCCTG--A-C-C-AAGCAGA-T-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCT-GGAATTTTTCATAAAAT-----------GC-AATTT-GGTTGCA-T---------G--CT-GT--TT-TTCGGTGTA-TGTC--GCA-GCGA-GACGTGT-G-GATTG-GTACTGTCGGTA--T-AT-CTGTAA-AAAAAAATTCGC--CACAAACATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CACTGATTATTCATTATTT-AA---CACACGCCA--TA--A-AA-A-----------A------AA------G--AA-AAAA-AGA-----AAAACTATC--C-ATCT--CTCTTAC-TT------ATTACAGTC---T---ACT--GCT-GACTCC----CTAAGCTTTTTTT-T---CAAAgc
gi|7 : ataTAAACTTGTAAAG--ATGTCTT-TTGTA----ATACTATCAGCTTT-----TACGAG-TT--AAGAAAA-------AAAAAA-------GAGAAAAG-------AATCCCTTGTACTTGGACTT-CCTCATA-CTTTAAAA--AA-CTTTTTAA-AAAA-------TATA--TTTATA---A--CGGGTTATCGGGAA-A--TCAGTACATGTAGTTT-ACAA-TACA-CGAAAAAATTTA-CAACCTTTT--TTCA-C-A-AATATCTA-A--TGATTGG--A----ATGTT-----ATGACTGTCAAAATTT--C-ATTCA-TTATTTTT-ATTT--GTTAAGT-TTGA-TTT--CAACT-GCATCT-CCCTTGTTCCAGTTAT---------------------CG--T-TA-A----A-----T----------CGTAAA--C-GTTT--AAA-----AAC---AACAAAA-CAGAAAATCT-------------G---GCGACAGATGCGTTCTGGGCCTG--A-C-CAAAGCAGA-G-GTTG-TG------TAATAGTGCTT---ACTTT----GACCGTAGTCC-GGAA------------------------
gi|8 : GG-TATCGGGAATA--TCAGTA--------TT-NNNNNNNNN-NN-NNNNNNNNN-N-NNNNNNN--NNNN-N-N-NNNNNNN--N--NNNNNNN-NN----NNNNNN-NN-NNN-NNNNN-NN--TT--C-ATTCA-TTA-TTT--ATTT--GT-AGTT-T-GC-TTT--CAACT-GCATCT-CCT---T-CCAGTTATA-TATTT---CTGATGTT-TACA--TGTA-A----AAA---TACAACATGTACGTAA--CC-TTTT--AAAA---CAAC---AACAAAAACACAAA-----------------G---G---------------G---CTG--A-T-C-AA-CAGA-T-GTTG-TG------T-A-AGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-G--TT--TTTGCA-T---------G--CT-GC--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGTAT-G-GATTG-GTGC------TAACT-GT-TT-TAATAAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCAAATGAGTGTGCGCCCTTA-TAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCtttttttttatagtaaagtgaatt
gi|9 : tcTT--C-ATTCA-TCA-TTTT-ATTT--GTTA--T-TTGC-TTT--CAACT-GCATCTTCCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--TGTA-A----AAAATACACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACA---------------------------------------AGGCCTG--A-T-C-AAGCAGATG-GTTG-TG------T-ATA---CAT---TCTC
gi|9 : -G-GTTG-TG------T-ATAGTGCTT---TCTCG-----AC----GTCC-GGAA------------------------GC-A--T--------------------------GT--TT--CC-GTGTA-TGTCA-GCA-GCGAGGACGTGT-G-GATTGCGT-C------TA--T-AT--TGTAtcaccagagggcgcgtagtagttgagagaagcgcacggaccctggtagagaatggttgtgtatagtgctttctcgacgtccggaagcatgtttccgtgtatgtcagcagcgaggacgtgtggattgcgtctatattgta
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTCCCTCAACGCCAGAGGGCGCGTTATGTAAGCTTCCCTTGGTGCGAGTAGCGCACGGAACTCTGGGTAGAGAATG
Unaligned ( gi|24 ): TCTCTCATCACCAGAGGGCGCGTTACGTAAGCTTAGTAGCGCACGGAACTCTGGGTAGAGAATG
Unaligned ( gi|28 ): AAACATCAATGTATGCATGCAGTCAGTATGCGGATCAAA
Unaligned ( gi|31 ): TTCTCTTACCGCCAGAGGGCGCGTTGCGCAAGCTTC
Unaligned ( gi|32 ): GAGAGAAGCGCACGGAACTCTGGGTAGAGAATGGTG
Unaligned ( gi|33 ): TGCGAGTAGCGCATGGAACTCTGGGTAGAGAATG
Unaligned ( gi|34 ): TGCGAGTAGCGCATGGAACTCTGGGTAGAGAATG
Unaligned ( gi|35 ): TGAGAGAAGCGCACGGAACCCTGGGTAGAGAATG
Alignments
lowQualScore : 11111111111111111111111111111111111111 111111111111111111111111111111
lowQualScore : 111 1111 11 1111111 11111111 1111111 11 11 111 1111111 1111111 2222 22222222 11111 1111111 11111 1 9999999999999999999999999 111 55555555555555555555555555555555555555 111111 000000000000000000000000000000 111111111 11111111 11 111 333333333333333333333333333333 11111 1111 11 111111
lowQualScore : 99 111 4444 5 11 5 77 6666666 22222222 0 4444444 4 4 3 5 4 4 55 00 4 000 6666666 777 3333333 5 3 5555 0 88888888 4 666 00 4 44 4 44 66 4 4 4 77777 1111111 77777 4 4 55 4 4 8 7 55 2 3 3 3 55 3 3 666 8 44 3 44 2222222222222222222222222 777 3 44 555 555 3 66666666666666666666666666666666666666 3 3 222222 333 2 777777 2 444 5555 5555 2 111111111111111111111111111111 66 00 3 555555555 44 33 44 3 3 3 3 3 3 3 3 7 44444444 44 3 3 7 99999 55 3 2 77 3 1 44 3 000 99 55 8 4 000000000000000000000000000000 4 4 00000 2222 55 3 00 3 444444 555 555 2 2 6666 77 3 555
lowQualScore : .. ... .... . .. . .. ....... ........ . ....... . . . . . . .. .. . ... ....... ... ....... . . .... . ........ . ... .. . .. . .. .. . . . ..... ....... ..... . . .. . . . . .. . . . . .. . . ... . .. . .. ......................... ... . .. ... ... . ...................................... . . ...... ... . ...... . ... .... .... . .............................. .. .. . ......... .. .. .. . . . . . . . . . ........ .. . . . ..... .. . . .. . . .. . ... .. .. . . .............................. . . ..... .... .. . .. . ...... ... ... . . .... .. . ...
lowQualScore : 22 333 2222 7 44 7 99 2222222 88888888 8 4444444 4 4 9 1 4 8 00 66 4 444 2222222 000 5555555 0 2 1111 1 11111111 4 111 66 4 77 4 77 11 4 4 4 77777 8888888 00000 4 4 55 0 0 0 3 00 0 6 3 6 00 6 6 444 8 22 1 22 1111111111111111111111111 666 1 22 444 888 3 44444444444444444444444444444444444444 3 3 999999 888 9 777777 5 444 7777 7777 7 333333333333333333333333333333 55 77 1 444444444 22 88 22 1 1 3 3 3 3 6 6 3 44444444 66 3 3 3 11111 00 6 5 66 6 0 66 3 444 55 55 0 0 666666666666666666666666666666 0 0 00000 9999 55 6 00 6 111111 888 000 9 7 1111 33 1 444
consensus : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAA-------AAAAAAAAAA--AGAGAAAAG-------AATCC-TTGTACTGGGACTT-CCTCATA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAA-A--TCAGTA--------TT-ACAATTACA-CG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATTTTT-TA-ATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGTT-TTGC-TTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T-TA-A----A-----TACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAAA-----------------G---G---------------GGGCCTGA-C-C------AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTCGCA-T---------G--CT-GT--TT-TCCG-TGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-----C--TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--A-AA-A-----------AAA--AGAA------G--GA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
Reference ( family-119 ) : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAA-------AAAAAAAAAA--AGAGAAAAG-------AATCC-TTGTACTGGGACTT-CCTCATA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAA-A--TCAGTA--------TT-ACAATTACA-CG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATTTTT-TA-ATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGTT-TTGC-TTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T-TA-A----A-----TACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAAA-----------------G---G---------------GGGCCTGA-C-C------AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTCGCA-T---------G--CT-GT--TT-TCCG-TGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-----C--TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--A-AA-A-----------AAA--AGAA------G--GA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
gi|1 : AG--ATGTCTTAT-GCA----AT-CTAT-A-CCTC-----TACGAG-CTTCAAGAAAG-------AAAACCAAAA---GAGAAA-G-------AATCC-TAGTACTGGGACTT-CCT-ATA-C-TT--AACAAA-CTTTTT-TTAAAA-------TACA--TATATAGATAT-AGGG-TA--AGGAC-AGCTC-GTA--------TTTACAATTACA-CG-AAAAATTAA-C-ACCTTTA--TTCA-C-ACAATATCCTAA--TGATTGGTAA----AATTTT-TA-TTG-CTGTC-AAATCTATCGATTCAGTTA-TTTCCATTTTGACTAGTT-T-GC-TTTTTCAACT-GCATCT-GCA---TTTCAGT-ATAATGCTTTGTTTGACGTT-TAC----------------------------TA-GTAA--CC-GTTTTTAAAA---CAAC---A-CAAAA-CACAAATATGGCACAGATACCGCGTTTG---------------GGACCTGAACAC------AAGCATA-G-GTTGGTG------T-ATATGGCTT---T-TCGTCATGAC----GTCC-GGAATTTTTTTTTATAATTAGAGAAAATGC-A--TT-GTTCGCA-TT--------GACCT-AT--TT-CCGG-TGTA-TGTCA-GCA-GCGA-GGCGTGT-G-GATTG-GT-----C--TA--TGATGCTGTAA-AAG-----TCAG--CAAAAAGATAACA-TCTAAAAACTTCCCGAGGGAGTGT-CGCCCTTATAAATTCCGCACACTG-TTATT--TCAATTAAA---CACACGCCA--AA--A-AA-A-----------AAA--AAAA------G--GA-AAAG-AAA-----AAA--T-TCAGC-ATCAACCTGCCAC-TT------AATACAGTC---TAACATCG-GCT-GACTCC----CTAAGC--TATTT-TATCCAAA
gi|10 : actgg--A--TGATTGG-TA----ATTCTT-TA--TG-CTGTC-AGATTT--T-ATTCA-TTA-TTTC-ATTT--GGTAGTT-T-GC-TTT--TAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T------------------A---TGT-----AA-CC-ATTT--AAAA---CAAC---AACAAAA-CACAAATCT--------------G---GCGACCGAAGCATTCTGGGCCTGA-C-C------AAGCAGA-G-GTTG-TGTATATAT-ATAGTGTTTAAATCTCG----GAT----GTCC-GGAA------------------------caac
gi|10 : cta------------------------GC-A--TT-GTTTGCA-T---------G--CT-GTATTT-TCCG-TGTA-TGTCA-GCA-GCGA-GACGttttttaatttatatacatttatagaaaatgcattgtttgcatgctgtattttccgtgtatgtcagcagcgagacg
gi|11 : ctaatgattggtaattctttatgctgtcagattttattcattatttcatttggtagtttgcttttaactgcatctcctttccagttataatattttctgacgtttacatatgtaaccatttaaaacaacaacaaaacacaaatctggcgaccgaagcattctgggcctgaccaagcagaggttgtgtatatatatagtgtttaaatctcggatgtccggaattttttaatttatatacatttatagaaaatTATTTT--TTGACGTT-TACA--T-------------------------ACGTAA--CA-GTTT--AAAA---CAAC---AACAAAA-CACAAATTT--------------G---GCGACATAAGCGTTCTGGGCCTGA-C-C------AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------T-----TT-TTTTATA-TATAGAAAATG--CT-AT--TT-TTCG-TGTA-TGTCA-GCA-GCGA-GACGTAT-G-GATTG-GT-----C--TA--T-AT-CTGTAA-AGG-----TCGC--AAATAAGATAACATTCTAAAAA-TTTCCGACGGAGTGTGCGCACTTA-TAAATCTGT-CACTGATTACT--TCAATT-AA---CACACG
gi|12 : -ATAGTGCTT---TCTCA----GAC----GTCCCGGAATTTTTTAAAATAGAGAAGAT----GC-A--TTTGTTCGCA-T---------G--CT-AT--TT-TCCG-TGTA-TGTCA-GCA-GCGA-GGCGTGT-G--ATTG-GT-----C--TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAAATA-CATTCTAAAAA-TTCCCAAGGGAGTGTG-GCCTCTAT-AAGTCCGC-CA-TGATTACT--TCAATT-AA---CACACGC-----A--A-AA-A-----------A----------------------AA-AAA-----AAA--T-TC--CTATCAACCTTTCACTTT------AATACAGT----T---ACTG-GCT-GA-TCC----CTAAGC--TTTTT-T---CAAAA
gi|13 : --T-AT-CTGTAA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTA-TAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCCAT-AA--A-AA-A-----------AAAGGAGAAAAAGCTG--AA-AAAA-AGA-----AAA--------A-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTGC----Cgctaa
gi|14 : TTTT--CTGACGTT-TACA--T-------------------------ACGTAA--CC-GTTT--AAGAATTTGGC---AACAGAA--GCGTT-----------------C---T---------------GGGTCTGA-C-C------AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TGTCA----GAC----GTCC-GGAA------------------------TT-A--TT-TTT
gi|15 : AACTTGTAAAG--ATGTCTT-C-GTACGTAATACTATCA-CTT-CAAAATACGGG-TA--AAG-AAA-------AAAAAAAAGA--AGAGAAAAA-------AATC---TGTACTTGGACTT-CCTCAAA-CATTA-AA--AA-CTTTTatatatagaaaatgcattgttcgc
gi|16 : AAGAAAAAA--AGAGAAAAG-------AATCC-TTATACTGGGAAAT-CCTAATA-CATT--AAT-AA-CTTTTT-A-A-------------------ATA---AT-CGGG-TATCGGGAA--------TA----------------TATA-TG-AAAAAGTTA-C--CCCTTT--TTCA-C-A-AATATct
gi|17 : ctT--TCAATT-AATA-CACACGCCA--AA--A-AA-A-----------AAA--AGAA------A--AAGAAAA-AGATAGAAAAA--T-TC--C-ATCA--CCTTCAC-TTC-----AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
gi|18 : CCCTTAT-AAATCCGC-CACTGATTACT--TCAAGT-AA---CACCCCCCT--AACCA-AC-ACCCCCCCCCCCAAT--AGAA-------------------A-----AAA--T-CC--C-ATTA--CCTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACgctaa
gi|19 : TTG-TG------T-ATAGTGCTT---TTTCG----GAC----GTCT-GGGA------------------------------TT--TTCTTA-T---------A-----------------TATA-TAT----------A-AA---AT-G-CATTG-----------TA--T-GT-CAGCAGCGAG-----CCGC--AAAAAAGATAACATTCT-AAAA-TTCCCG
gi|2 : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAGATAAAAAAATCC-TTGTACTGGGACTT-CCTCAAA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAAGA--TCAGTA--------TT-ACAATTACACCG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATCTTT-TA-ATG-CTGTC-AAATTT--C-GTTCA-TTATTTTT-ATTT--GTTAGTT-TTGCTTTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACATGT-CA-AAAATA-----TACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAA---------------------------------------GGCCTGA-T-C------AAGCAGA-T-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTTGCA-T---------G--CT-GT--TT-TCCG-TGTA-TGTCA-GCA-GTGA-GACGTGT-G-GATTG-GT-----T--TT--T-AT-CTGTAA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-ATTCCGAGGGAGTGTGCGCCCTTATTAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCCATTAA--A-AA-A-----------AAA--AGAA------GCTGA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TTCACTGGAATACAGTCCTGT---ACTG-GCTGGACT-C----CTAAGC--TTTTT-T---CAAAA
gi|20 : TCA-CTTTCAAAATACGAG-CT--AAGAAAA-------AAAAA----------GAAACG-------AATTC-TTGTACTGGGACGT-TATCATA-CATTA-AA--AA-CTTTAT-A-TATA-------TATA--TATATA---
gi|21 : -ATTA--GTTAGTT-T-AC-TTT--CAACT-GTATTT-TCT---GTTCAGTTATAAAA---------ATGTTATTCA--T-T-------------TACA-----AACGTAAA--C-ATTT--AAAA---CAta
gi|23 : ctga------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAATATTTTTATATATAGAAAAT----GC-G--TT-GTTCGCA-T---------G--CT-AT--TT-TCCG-T
gi|25 : -ATCA--CTTTCAC-TT------AATACAGTT---T---ACTG-GCT-GACTCC----CTAAGT--TTTTT-T---CCAAA
gi|26 : ---ACTGCACT-GACTCCGGCTCTAAGA--TTTTT-T---CAAAtgtta
gi|27 : TACAGTC---T---ATTG-GCT-GACTCC----CCAAGCT-TTTTT-T---CAAAAggctaaactt
gi|29 : CT-GACTCT----CTAAGC--TTTTT-T---CAAAAgctaa
gi|3 : ctgcaTGTAAAACCATGTCTT-C-GTA----ATACTATCA-CTT-CAAAATACGGGCTT--AAGAAAA-------AAAAAAAAAAGAAGAGAAAAG-------A-TCC-TTGTAC-GGGACTTTCCTCAAAACATT--AA--AAACTTTTT-A-AAAAAATATATTATA--TATATA----T-CGGT-TATCGGAAAGA--TCAGTAG-------TT-ACAATT-CA-CG-AAAAATTTAAC-ACCTTTT--TTCAACGA-AATATCT--AA-TGATTGG-AA----ATTTTT-TA-TTG-CTGTC-AAATTT--C-ATTCA-TGA-TTTT-ATTT--CTGAGTTCTTGC-TTT--CAACT-ACAT-T-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--TGTA-A----AAAATACACA---TGTACGTAA--CC-GTTT--AAAA---CAAC---AACAAAA-CACAAAATGCGCACA--------G---A---------------AGGCCTGA-C-C------AAGCAGA-T-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCT-GGAA------------------------GC-T--TT-GTTTGCA-T---------G--CT-GT--TT-TCCG-TGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-----C--TA--T-AT-CTGTAA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTG---------------CGC-CTCTGATTATT--TCAATT-AA---CACACGCCA--TT--A-AA-A-----------AAA--AGAA------GCTGA-AAAA-AAA-----AAA----TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAAtctaaact
gi|30 : taaaa---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAAgctaa
gi|4 : AAATTGTAAAG--ATATCAT-T-GCA----ATACTATCA-CTTTCAAAATACGA--TT--CAGAAAA-------AA-----------GAGAAAAG-------AATCC-T-ATACTGGG-CTT-CCT-ATA-CATT--TA--AA-CTTTT--A-AAAA-------TATACATATATA---AT--AGG-TA-CTGGAA-A--TCAGTA--------TT-AC--------------------------CTTT--TTCA-C-A-AATATCT--AGATAAT--G-AATTGTATTTTT-TA--TG-TTGTC-AAATTT--C-ATTCA-TTA-TTTTCATTG--ATGAGTT-T-GC-TTT--CAACT-GCTTCT-CTT---T--CAGTTATAATATTTT--CTGACGTT-TACA--T-------------------------ACGTAAATCC-GTTT--AAAA---CA-C---AACAAAA-CACAAAATCT-------------G---GCGACAGAAGCGTTCTGGGCCTGA-C--------AAGCATA-G-GTTG-TG------T-ATAGTGCTT---TCTCA----GAC----GTCC-GGAATTTTTTTTTATAAATAGAAAAT--GCCA--TT-GTTC-CAGT---------G--CTAGT--TTCTCCG-TG-A-T-TCAAGCAAGCAC-GGCGTGT-GCGATTG-GG-----T--CA--T--T-CTGATA-AAG-----TCGCACCAAAAAGATAACATTCTAAAA--TTCCCGAGGGAGTGTGC-CCCTTAT-GAATCCGC--ACTGACTACT--TCAATT-AATACCACCCGCCA--AA--AAAA-A-----------AAA--ACAA------A--AA-AAAATAGA-----AAA--A-TT--C-ATCA--C-TTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAAcgctaaa
gi|5 : A-------GAAAAAAAAA--AGAGAAAGA-------GATCC-TTGTACTGGGACTT--CTCA-A-C-TT--AA--AA-ATTTTT---AAAA-------TAT---TATATC---ATATGGG-TATCGGGAA-----TAGTAT-------TT-ACAATTAAA-CG---AAATTTA-C-ACTTTTTCATTGA-T-C-AATAT-T--A--TGATTG--------ATCTTT----ATT-CTGTC--AATTT--C-ATT---TTA-TATT-ATTT--GTTAG-T-TTGC-TTT--CA--TAGCATCT-CCT---T--CGATTATAG-ATTTT--CCTGCGTT-T-CA--T-TAGA----A-----AACA---C-TACG-AAT-TCAATTT--AAAA---C--C---AACAAAA-C---AA-----------------G---A---------------TGAC---A-C-CGAAAAAAAACAGA-GTGTTG-T----------TAGTGC-T---TCTCG----GAC----G-AC-GG--------------------------GC-T--AT-ATTTACA-T---------G--CT--T--TT-CCCG-TGTATTGTCA--CA-GCGA-CCCGTGTGG-GATTGCGT-----T------T-AT-CTGTAA-AAT-----ATGC--C-ACAAGATAACATTCTAAAAA-TT-CCGAGGG---GTGGGCCCTTAGT-AATC--T-CTCTCATTATT--T-AATT-AA----ACACGATA--AA--ATAACA-----------AAAT-AAAA------GT-GA-AAAA-AGA-----AAA--T-TC--C-GT----CCTTCA---T------AATACAGTT---T----CTG-GCT-A----------TAAGC--TTTTTGT---CAAAgct
gi|6 : T-ACATGTATA-TT-AAAAATTTA-C-ACCTTTT----CA-C-A-AAATTCT--AA-CGATTGG-AA----ATTTTTATGTATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGGT-TTGC-TTT--CAACT-GCATCT-CCT---T-CCAGTTATAATATTTT--CTGACGTT-TACA--T----A----C-----TGCA---TGCACGTAAC-GT-GTTT--AAAA---CAACTCTAGCGA---CAGAA---------------------------------------GGCCTGA-C-C------AAGCAGA-T-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCT-GGAATTTTTCATAAAAT-----------GC-AATTT-GGTTGCA-T---------G--CT-GT--TT-TTCGGTGTA-TGTC--GCA-GCGA-GACGTGT-G-GATTG-GTACTGTCGGTA--T-AT-CTGTAA-AAAAAAATTCGC--CACAAACATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CACTGATTATTCATTATTT-AA---CACACGCCA--TA--A-AA-A-----------A------AA------G--AA-AAAA-AGA-----AAAACTATC--C-ATCT--CTCTTAC-TT------ATTACAGTC---T---ACT--GCT-GACTCC----CTAAGCTTTTTTT-T---CAAAgc
gi|7 : ataTAAACTTGTAAAG--ATGTCTT-TTGTA----ATACTATCAGCTTT-----TACGAG-TT--AAGAAAA-------AAAAAA-------GAGAAAAG-------AATCCCTTGTACTTGGACTT-CCTCATA-CTTTAAAA--AA-CTTTTTAA-AAAA-------TATA--TTTATA---A--CGGGTTATCGGGAA-A--TCAGTACATGTAGTTT-ACAA-TACA-CGAAAAAATTTA-CAACCTTTT--TTCA-C-A-AATATCTA-A--TGATTGG--A----ATGTT-----ATGACTGTCAAAATTT--C-ATTCA-TTATTTTT-ATTT--GTTAAGT-TTGA-TTT--CAACT-GCATCT-CCCTTGTTCCAGTTAT---------------------CG--T-TA-A----A-----T----------CGTAAA--C-GTTT--AAA-----AAC---AACAAAA-CAGAAAATCT-------------G---GCGACAGATGCGTTCTGGGCCTGA-C-CA-----AAGCAGA-G-GTTG-TG------TAATAGTGCTT---ACTTT----GACCGTAGTCC-GGAA------------------------
gi|8 : GG-TATCGGGAATA--TCAGTA--------TT-NNNNNNNNN-NN-NNNNNNNNN-N-NNNNNNN--NNNN-N-N-NNNNNNN--N--NNNNNNN-NN----NNNNNN-NN-NNN-NNNNN-NN--TT--C-ATTCA-TTA-TTT--ATTT--GT-AGTT-T-GC-TTT--CAACT-GCATCT-CCT---T-CCAGTTATA-TATTT---CTGATGTT-TACA--TGTA-A----AAA---TACAACATGTACGTAA--CC-TTTT--AAAA---CAAC---AACAAAAACACAAA-----------------G---G---------------G---CTGA-T-C------AA-CAGA-T-GTTG-TG------T-A-AGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-G--TT--TTTGCA-T---------G--CT-GC--TT-TCCG-TGTA-TGTCA-GCA-GCGA-GACGTAT-G-GATTG-GTG----C--TAACT-GT-TT-TAATAAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCAAATGAGTGTGCGCCCTTA-TAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCtttttttttatagtaaagtgaatt
gi|9 : tcTT--C-ATTCA-TCA-TTTT-ATTT--GTTA--T-TTGC-TTT--CAACT-GCATCTTCCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--TGTA-A----AAAATACACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAA---------------------------------------GGCCTGA-T-C------AAGCAGATG-GTTG-TG------T-ATA---CAT---TCTC
gi|9 : -G-GTTG-TG------T-ATAGTGCTT---TCTCG-----AC----GTCC-GGAA------------------------GC-A--T--------------------------GT--TT--CCG-TGTA-TGTCA-GCA-GCGAGGACGTGT-G-GATTGCGT-----C--TA--T-AT--TGTAtcaccagagggcgcgtagtagttgagagaagcgcacggaccctggtagagaatggttgtgtatagtgctttctcgacgtccggaagcatgtttccgtgtatgtcagcagcgaggacgtgtggattgcgtctatattgta
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTCCCTCAACGCCAGAGGGCGCGTTATGTAAGCTTCCCTTGGTGCGAGTAGCGCACGGAACTCTGGGTAGAGAATG
Unaligned ( gi|24 ): TCTCTCATCACCAGAGGGCGCGTTACGTAAGCTTAGTAGCGCACGGAACTCTGGGTAGAGAATG
Unaligned ( gi|28 ): AAACATCAATGTATGCATGCAGTCAGTATGCGGATCAAA
Unaligned ( gi|31 ): TTCTCTTACCGCCAGAGGGCGCGTTGCGCAAGCTTC
Unaligned ( gi|32 ): GAGAGAAGCGCACGGAACTCTGGGTAGAGAATGGTG
Unaligned ( gi|33 ): TGCGAGTAGCGCATGGAACTCTGGGTAGAGAATG
Unaligned ( gi|34 ): TGCGAGTAGCGCATGGAACTCTGGGTAGAGAATG
Unaligned ( gi|35 ): TGAGAGAAGCGCACGGAACCCTGGGTAGAGAATG
Alignments
lowQualScore : 11111111111111111111111111111111111111 111111111111111111111111111111
lowQualScore : 111 1111 11 1111111 11111111 1111111 11 11 111 1111111 1111111 2222 22222222 11111 1111111 11111 1 9999999999999999999999999 111 55555555555555555555555555555555555555 111111 000000000000000000000000000000 111111111 11111111 11 111 333333333333333333333333333333 11111 1111 11 111111
lowQualScore : 99 111 4444 5 11 5 77 6666666 22222222 0 4444444 4 4 3 5 4 4 55 00 4 000 6666666 777 3333333 5 3 5555 0 88888888 4 666 00 4 44 4 44 66 4 4 4 77777 1111111 77777 4 4 55 4 4 8 7 55 2 3 3 3 55 3 3 666 8 44 3 44 2222222222222222222222222 777 3 44 555 555 3 66666666666666666666666666666666666666 3 3 222222 333 2 777777 2 444 5555 5555 2 111111111111111111111111111111 66 00 3 555555555 44 33 44 3 3 3 3 3 3 3 3 7 44444444 44 3 3 7 99999 55 3 2 77 3 1 44 3 000 99 55 8 4 000000000000000000000000000000 4 4 00000 2222 55 3 00 3 444444 555 555 2 2 6666 77 3 555
lowQualScore : .. ... .... . .. . .. ....... ........ . ....... . . . . . . .. .. . ... ....... ... ....... . . .... . ........ . ... .. . .. . .. .. . . . ..... ....... ..... . . .. . . . . .. . . . . .. . . ... . .. . .. ......................... ... . .. ... ... . ...................................... . . ...... ... . ...... . ... .... .... . .............................. .. .. . ......... .. .. .. . . . . . . . . . ........ .. . . . ..... .. . . .. . . .. . ... .. .. . . .............................. . . ..... .... .. . .. . ...... ... ... . . .... .. . ...
lowQualScore : 22 333 2222 7 44 7 99 2222222 88888888 8 4444444 4 4 9 1 4 8 00 66 4 444 2222222 000 5555555 0 2 1111 1 11111111 4 111 66 4 77 4 77 11 4 4 4 77777 8888888 00000 4 4 55 0 0 0 3 00 0 6 3 6 00 6 6 444 8 22 1 22 1111111111111111111111111 666 1 22 444 888 3 44444444444444444444444444444444444444 3 3 999999 888 9 777777 5 444 7777 7777 7 333333333333333333333333333333 55 77 1 444444444 22 88 22 1 1 3 3 3 3 6 6 3 44444444 66 3 3 3 11111 00 6 5 66 6 0 66 3 444 55 55 0 0 666666666666666666666666666666 0 0 00000 9999 55 6 00 6 111111 888 000 9 7 1111 33 1 444
consensus : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAA-------AAAAAAAAAA--AGAGAAAAG-------AATCC-TTGTACTGGGACTT-CCTCATA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAA-A--TCAGTA--------TT-ACAATTACA-CG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATTTTT-TA-ATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGTT-TTGC-TTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T-TA-A----A-----TACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAAA-----------------G---G---------------GGGCCTGA-C-C------AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTCGCA-T---------G--CT-GT--TT-TCCG-TGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-----C--TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--A-AA-A-----------AAA--AGAA------G--GA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
Reference ( family-119 ) : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAA-------AAAAAAAAAA--AGAGAAAAG-------AATCC-TTGTACTGGGACTT-CCTCATA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAA-A--TCAGTA--------TT-ACAATTACA-CG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATTTTT-TA-ATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGTT-TTGC-TTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T-TA-A----A-----TACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAAA-----------------G---G---------------GGGCCTGA-C-C------AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTCGCA-T---------G--CT-GT--TT-TCCG-TGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-----C--TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--A-AA-A-----------AAA--AGAA------G--GA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
gi|1 : AG--ATGTCTTAT-GCA----AT-CTAT-A-CCTC-----TACGAG-CTTCAAGAAAG-------AAAACCAAAA---GAGAAA-G-------AATCC-TAGTACTGGGACTT-CCT-ATA-C-TT--AACAAA-CTTTTT-TTAAAA-------TACA--TATATAGATAT-AGGG-TA--AGGAC-AGCTC-GTA--------TTTACAATTACA-CG-AAAAATTAA-C-ACCTTTA--TTCA-C-ACAATATCCTAA--TGATTGGTAA----AATTTT-TA-TTG-CTGTC-AAATCTATCGATTCAGTTA-TTTCCATTTTGACTAGTT-T-GC-TTTTTCAACT-GCATCT-GCA---TTTCAGT-ATAATGCTTTGTTTGACGTT-TAC----------------------------TA-GTAA--CC-GTTTTTAAAA---CAAC---A-CAAAA-CACAAATATGGCACAGATACCGCGTTTG---------------GGACCTGAACAC------AAGCATA-G-GTTGGTG------T-ATATGGCTT---T-TCGTCATGAC----GTCC-GGAATTTTTTTTTATAATTAGAGAAAATGC-A--TT-GTTCGCA-TT--------GACCT-AT--TT-CCGG-TGTA-TGTCA-GCA-GCGA-GGCGTGT-G-GATTG-GT-----C--TA--TGATGCTGTAA-AAG-----TCAG--CAAAAAGATAACA-TCTAAAAACTTCCCGAGGGAGTGT-CGCCCTTATAAATTCCGCACACTG-TTATT--TCAATTAAA---CACACGCCA--AA--A-AA-A-----------AAA--AAAA------G--GA-AAAG-AAA-----AAA--T-TCAGC-ATCAACCTGCCAC-TT------AATACAGTC---TAACATCG-GCT-GACTCC----CTAAGC--TATTT-TATCCAAA
gi|10 : actgg--A--TGATTGG-TA----ATTCTT-TA--TG-CTGTC-AGATTT--T-ATTCA-TTA-TTTC-ATTT--GGTAGTT-T-GC-TTT--TAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T------------------A---TGT-----AA-CC-ATTT--AAAA---CAAC---AACAAAA-CACAAATCT--------------G---GCGACCGAAGCATTCTGGGCCTGA-C-C------AAGCAGA-G-GTTG-TGTATATAT-ATAGTGTTTAAATCTCG----GAT----GTCC-GGAA------------------------caac
gi|10 : cta------------------------GC-A--TT-GTTTGCA-T---------G--CT-GTATTT-TCCG-TGTA-TGTCA-GCA-GCGA-GACGttttttaatttatatacatttatagaaaatgcattgtttgcatgctgtattttccgtgtatgtcagcagcgagacg
gi|11 : ctaatgattggtaattctttatgctgtcagattttattcattatttcatttggtagtttgcttttaactgcatctcctttccagttataatattttctgacgtttacatatgtaaccatttaaaacaacaacaaaacacaaatctggcgaccgaagcattctgggcctgaccaagcagaggttgtgtatatatatagtgtttaaatctcggatgtccggaattttttaatttatatacatttatagaaaatTATTTT--TTGACGTT-TACA--T-------------------------ACGTAA--CA-GTTT--AAAA---CAAC---AACAAAA-CACAAATTT--------------G---GCGACATAAGCGTTCTGGGCCTGA-C-C------AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------T-----TT-TTTTATA-TATAGAAAATG--CT-AT--TT-TTCG-TGTA-TGTCA-GCA-GCGA-GACGTAT-G-GATTG-GT-----C--TA--T-AT-CTGTAA-AGG-----TCGC--AAATAAGATAACATTCTAAAAA-TTTCCGACGGAGTGTGCGCACTTA-TAAATCTGT-CACTGATTACT--TCAATT-AA---CACACG
gi|12 : -ATAGTGCTT---TCTCA----GAC----GTCCCGGAATTTTTTAAAATAGAGAAGAT----GC-A--TTTGTTCGCA-T---------G--CT-AT--TT-TCCG-TGTA-TGTCA-GCA-GCGA-GGCGTGT-G--ATTG-GT-----C--TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAAATA-CATTCTAAAAA-TTCCCAAGGGAGTGTG-GCCTCTAT-AAGTCCGC-CA-TGATTACT--TCAATT-AA---CACACGC-----A--A-AA-A-----------A----------------------AA-AAA-----AAA--T-TC--CTATCAACCTTTCACTTT------AATACAGT----T---ACTG-GCT-GA-TCC----CTAAGC--TTTTT-T---CAAAA
gi|13 : --T-AT-CTGTAA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTA-TAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCCAT-AA--A-AA-A-----------AAAGGAGAAAAAGCTG--AA-AAAA-AGA-----AAA--------A-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTGC----Cgctaa
gi|14 : TTTT--CTGACGTT-TACA--T-------------------------ACGTAA--CC-GTTT--AAGAATTTGGC---AACAGAA--GCGTT-----------------C---T---------------GGGTCTGA-C-C------AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TGTCA----GAC----GTCC-GGAA------------------------TT-A--TT-TTT
gi|15 : AACTTGTAAAG--ATGTCTT-C-GTACGTAATACTATCA-CTT-CAAAATACGGG-TA--AAG-AAA-------AAAAAAAAGA--AGAGAAAAA-------AATC---TGTACTTGGACTT-CCTCAAA-CATTA-AA--AA-CTTTTatatatagaaaatgcattgttcgc
gi|16 : AAGAAAAAA--AGAGAAAAG-------AATCC-TTATACTGGGAAAT-CCTAATA-CATT--AAT-AA-CTTTTT-A-A-------------------ATA---AT-CGGG-TATCGGGAA--------TA----------------TATA-TG-AAAAAGTTA-C--CCCTTT--TTCA-C-A-AATATct
gi|17 : ctT--TCAATT-AATA-CACACGCCA--AA--A-AA-A-----------AAA--AGAA------A--AAGAAAA-AGATAGAAAAA--T-TC--C-ATCA--CCTTCAC-TTC-----AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
gi|18 : CCCTTAT-AAATCCGC-CACTGATTACT--TCAAGT-AA---CACCCCCCT--AACCA-AC-ACCCCCCCCCCCAAT--AGAA-------------------A-----AAA--T-CC--C-ATTA--CCTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACgctaa
gi|19 : TTG-TG------T-ATAGTGCTT---TTTCG----GAC----GTCT-GGGA------------------------------TT--TTCTTA-T---------A-----------------TATA-TAT----------A-AA---AT-G-CATTG-----------TA--T-GT-CAGCAGCGAG-----CCGC--AAAAAAGATAACATTCT-AAAA-TTCCCG
gi|2 : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAGATAAAAAAATCC-TTGTACTGGGACTT-CCTCAAA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAAGA--TCAGTA--------TT-ACAATTACACCG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATCTTT-TA-ATG-CTGTC-AAATTT--C-GTTCA-TTATTTTT-ATTT--GTTAGTT-TTGCTTTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACATGT-CA-AAAATA-----TACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAA---------------------------------------GGCCTGA-T-C------AAGCAGA-T-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTTGCA-T---------G--CT-GT--TT-TCCG-TGTA-TGTCA-GCA-GTGA-GACGTGT-G-GATTG-GT-----T--TT--T-AT-CTGTAA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-ATTCCGAGGGAGTGTGCGCCCTTATTAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCCATTAA--A-AA-A-----------AAA--AGAA------GCTGA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TTCACTGGAATACAGTCCTGT---ACTG-GCTGGACT-C----CTAAGC--TTTTT-T---CAAAA
gi|20 : TCA-CTTTCAAAATACGAG-CT--AAGAAAA-------AAAAA----------GAAACG-------AATTC-TTGTACTGGGACGT-TATCATA-CATTA-AA--AA-CTTTAT-A-TATA-------TATA--TATATA---
gi|21 : -ATTA--GTTAGTT-T-AC-TTT--CAACT-GTATTT-TCT---GTTCAGTTATAAAA---------ATGTTATTCA--T-T-------------TACA-----AACGTAAA--C-ATTT--AAAA---CAta
gi|23 : ctga------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAATATTTTTATATATAGAAAAT----GC-G--TT-GTTCGCA-T---------G--CT-AT--TT-TCCG-T
gi|25 : -ATCA--CTTTCAC-TT------AATACAGTT---T---ACTG-GCT-GACTCC----CTAAGT--TTTTT-T---CCAAA
gi|26 : ---ACTGCACT-GACTCCGGCTCTAAGA--TTTTT-T---CAAAtgtta
gi|27 : TACAGTC---T---ATTG-GCT-GACTCC----CCAAGCT-TTTTT-T---CAAAAggctaaactt
gi|29 : CT-GACTCT----CTAAGC--TTTTT-T---CAAAAgctaa
gi|3 : ctgcaTGTAAAACCATGTCTT-C-GTA----ATACTATCA-CTT-CAAAATACGGGCTT--AAGAAAA-------AAAAAAAAAAGAAGAGAAAAG-------A-TCC-TTGTAC-GGGACTTTCCTCAAAACATT--AA--AAACTTTTT-A-AAAAAATATATTATA--TATATA----T-CGGT-TATCGGAAAGA--TCAGTAG-------TT-ACAATT-CA-CG-AAAAATTTAAC-ACCTTTT--TTCAACGA-AATATCT--AA-TGATTGG-AA----ATTTTT-TA-TTG-CTGTC-AAATTT--C-ATTCA-TGA-TTTT-ATTT--CTGAGTTCTTGC-TTT--CAACT-ACAT-T-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--TGTA-A----AAAATACACA---TGTACGTAA--CC-GTTT--AAAA---CAAC---AACAAAA-CACAAAATGCGCACA--------G---A---------------AGGCCTGA-C-C------AAGCAGA-T-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCT-GGAA------------------------GC-T--TT-GTTTGCA-T---------G--CT-GT--TT-TCCG-TGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-----C--TA--T-AT-CTGTAA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTG---------------CGC-CTCTGATTATT--TCAATT-AA---CACACGCCA--TT--A-AA-A-----------AAA--AGAA------GCTGA-AAAA-AAA-----AAA----TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAAtctaaact
gi|30 : taaaa---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAAgctaa
gi|4 : AAATTGTAAAG--ATATCAT-T-GCA----ATACTATCA-CTTTCAAAATACGA--TT--CAGAAAA-------AA-----------GAGAAAAG-------AATCC-T-ATACTGGG-CTT-CCT-ATA-CATT--TA--AA-CTTTT--A-AAAA-------TATACATATATA---AT--AGG-TA-CTGGAA-A--TCAGTA--------TT-AC--------------------------CTTT--TTCA-C-A-AATATCT--AGATAAT--G-AATTGTATTTTT-TA--TG-TTGTC-AAATTT--C-ATTCA-TTA-TTTTCATTG--ATGAGTT-T-GC-TTT--CAACT-GCTTCT-CTT---T--CAGTTATAATATTTT--CTGACGTT-TACA--T-------------------------ACGTAAATCC-GTTT--AAAA---CA-C---AACAAAA-CACAAAATCT-------------G---GCGACAGAAGCGTTCTGGGCCTGA-C--------AAGCATA-G-GTTG-TG------T-ATAGTGCTT---TCTCA----GAC----GTCC-GGAATTTTTTTTTATAAATAGAAAAT--GCCA--TT-GTTC-CAGT---------G--CTAGT--TTCTCCG-TG-A-T-TCAAGCAAGCAC-GGCGTGT-GCGATTG-GG-----T--CA--T--T-CTGATA-AAG-----TCGCACCAAAAAGATAACATTCTAAAA--TTCCCGAGGGAGTGTGC-CCCTTAT-GAATCCGC--ACTGACTACT--TCAATT-AATACCACCCGCCA--AA--AAAA-A-----------AAA--ACAA------A--AA-AAAATAGA-----AAA--A-TT--C-ATCA--C-TTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAAcgctaaa
gi|5 : A-------GAAAAAAAAA--AGAGAAAGA-------GATCC-TTGTACTGGGACTT--CTCA-A-C-TT--AA--AA-ATTTTT---AAAA-------TAT---TATATC---ATATGGG-TATCGGGAA-----TAGTAT-------TT-ACAATTAAA-CG---AAATTTA-C-ACTTTTTCATTGA-T-C-AATAT-T--A--TGATTG--------ATCTTT----ATT-CTGTC--AATTT--C-ATT---TTA-TATT-ATTT--GTTAG-T-TTGC-TTT--CA--TAGCATCT-CCT---T--CGATTATAG-ATTTT--CCTGCGTT-T-CA--T-TAGA----A-----AACA---C-TACG-AAT-TCAATTT--AAAA---C--C---AACAAAA-C---AA-----------------G---A---------------TGAC---A-C-CGAAAAAAAACAGA-GTGTTG-T----------TAGTGC-T---TCTCG----GAC----G-AC-GG--------------------------GC-T--AT-ATTTACA-T---------G--CT--T--TT-CCCG-TGTATTGTCA--CA-GCGA-CCCGTGTGG-GATTGCGT-----T------T-AT-CTGTAA-AAT-----ATGC--C-ACAAGATAACATTCTAAAAA-TT-CCGAGGG---GTGGGCCCTTAGT-AATC--T-CTCTCATTATT--T-AATT-AA----ACACGATA--AA--ATAACA-----------AAAT-AAAA------GT-GA-AAAA-AGA-----AAA--T-TC--C-GT----CCTTCA---T------AATACAGTT---T----CTG-GCT-A----------TAAGC--TTTTTGT---CAAAgct
gi|6 : T-ACATGTATA-TT-AAAAATTTA-C-ACCTTTT----CA-C-A-AAATTCT--AA-CGATTGG-AA----ATTTTTATGTATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGGT-TTGC-TTT--CAACT-GCATCT-CCT---T-CCAGTTATAATATTTT--CTGACGTT-TACA--T----A----C-----TGCA---TGCACGTAAC-GT-GTTT--AAAA---CAACTCTAGCGA---CAGAA---------------------------------------GGCCTGA-C-C------AAGCAGA-T-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCT-GGAATTTTTCATAAAAT-----------GC-AATTT-GGTTGCA-T---------G--CT-GT--TT-TTCGGTGTA-TGTC--GCA-GCGA-GACGTGT-G-GATTG-GTACTGTCGGTA--T-AT-CTGTAA-AAAAAAATTCGC--CACAAACATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CACTGATTATTCATTATTT-AA---CACACGCCA--TA--A-AA-A-----------A------AA------G--AA-AAAA-AGA-----AAAACTATC--C-ATCT--CTCTTAC-TT------ATTACAGTC---T---ACT--GCT-GACTCC----CTAAGCTTTTTTT-T---CAAAgc
gi|7 : ataTAAACTTGTAAAG--ATGTCTT-TTGTA----ATACTATCAGCTTT-----TACGAG-TT--AAGAAAA-------AAAAAA-------GAGAAAAG-------AATCCCTTGTACTTGGACTT-CCTCATA-CTTTAAAA--AA-CTTTTTAA-AAAA-------TATA--TTTATA---A--CGGGTTATCGGGAA-A--TCAGTACATGTAGTTT-ACAA-TACA-CGAAAAAATTTA-CAACCTTTT--TTCA-C-A-AATATCTA-A--TGATTGG--A----ATGTT-----ATGACTGTCAAAATTT--C-ATTCA-TTATTTTT-ATTT--GTTAAGT-TTGA-TTT--CAACT-GCATCT-CCCTTGTTCCAGTTAT---------------------CG--T-TA-A----A-----T----------CGTAAA--C-GTTT--AAA-----AAC---AACAAAA-CAGAAAATCT-------------G---GCGACAGATGCGTTCTGGGCCTGA-C-CA-----AAGCAGA-G-GTTG-TG------TAATAGTGCTT---ACTTT----GACCGTAGTCC-GGAA------------------------
gi|8 : GG-TATCGGGAATA--TCAGTA--------TT-NNNNNNNNN-NN-NNNNNNNNN-N-NNNNNNN--NNNN-N-N-NNNNNNN--N--NNNNNNN-NN----NNNNNN-NN-NNN-NNNNN-NN--TT--C-ATTCA-TTA-TTT--ATTT--GT-AGTT-T-GC-TTT--CAACT-GCATCT-CCT---T-CCAGTTATA-TATTT---CTGATGTT-TACA--TGTA-A----AAA---TACAACATGTACGTAA--CC-TTTT--AAAA---CAAC---AACAAAAACACAAA-----------------G---G---------------G---CTGA-T-C------AA-CAGA-T-GTTG-TG------T-A-AGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-G--TT--TTTGCA-T---------G--CT-GC--TT-TCCG-TGTA-TGTCA-GCA-GCGA-GACGTAT-G-GATTG-GTG----C--TAACT-GT-TT-TAATAAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCAAATGAGTGTGCGCCCTTA-TAAATCCAC-CTCTGATTATT--TCAATT-AA---CACACGCtttttttttatagtaaagtgaatt
gi|9 : tcTT--C-ATTCA-TCA-TTTT-ATTT--GTTA--T-TTGC-TTT--CAACT-GCATCTTCCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--TGTA-A----AAAATACACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAA---------------------------------------GGCCTGA-T-C------AAGCAGATG-GTTG-TG------T-ATA---CAT---TCTC
gi|9 : -G-GTTG-TG------T-ATAGTGCTT---TCTCG-----AC----GTCC-GGAA------------------------GC-A--T--------------------------GT--TT--CCG-TGTA-TGTCA-GCA-GCGAGGACGTGT-G-GATTGCGT-----C--TA--T-AT--TGTAtcaccagagggcgcgtagtagttgagagaagcgcacggaccctggtagagaatggttgtgtatagtgctttctcgacgtccggaagcatgtttccgtgtatgtcagcagcgaggacgtgtggattgcgtctatattgta
blockSeqs : CC TT CGTA G TC C . AAAAAAA AAAAAGAA ATAAAAA C T C A A A AA T A AA AATATAT ACA ATAT T T GA CATGTAGT . AAT C AA A AA CA A G . AGA AATTGT ATGTA A A . . . T C . T C T T . A T TTG T . A TG GTAAAAAATACACATGT ATC A . ATT TCT A AATCTGGCGACAGAAGCGTTCT . . GAAAAA GT . TATATA A AAA . CGTA C TTTTTTTTTATAAATAGAAAATGCCA TG G ATAGAAAAT . AG AT C G T A A G G C C ACTGTCGG AC . . C AAAAT AC . C TT . A CA . TAC TT CC A C CCCCCCCCCCCAATAGAA G T TAGAA ACTA . T AC T CACTGG CTG . C G GGCT TT G .
blockSeqs : . C . . TC . . . AAAGAA . . . A T . A A . . A . A ATC . T GA G . AAT . A . A . . . . AA TA TAA . . . . . T . . T . T . . . . . T . . . GTAAAAATACAACATGT AC . . . . . AATCTGGCGACAGATGCGTTCT . . A TG . . . . . . . TTTTTTAAAATAGAGAAGATGCA G . . . G . . . . . . . . . C GC . . . T . . . C GT . A . . TA T . T . AAAGGAGAAAAAGCTGA . . . T . . . . C . . . . . T . .
blockSeqs : . C . . TC . . . AAAAAA . . . C A . A A . . A . A ATC . T TA T . AAT . A . A . . . . AA AA TAT . . . . . . . . T . T . . . . . T . . . GTAAAAAATACACATGT AC . . . . . ATCTGGCGACCGAAGCATTCT . . . G . . . . . . . TATTTTTATATATAGAAAATGCG T . . . A . . . . . . . . . . C . . . . . . . C TT . T . . . . . . . AAAAGAAGCTG . . . T . . . . . . . . . . . . .
blockSeqs : . C . . C . . . AAAAAA . . . C T . A . . . A . A TC . T A . . ATG . A . A . . . . AA AA NNN . . . . . . . . T . T . . . . . T . . . CAAAAATATACATGT TT . . . . . ATTTGGCGACATAAGCGTTCT . . . G . . . . . . . TTTTTCATAAAATGCAAT T . . . A . . . . . . . . . . C . . . . . . . C T . A . . . . . . . AAAAGAAGCTG . . . T . . . . . . . . . . . . .
blockSeqs : . T . . C . . . AAAAAA . . . C A . A . . . A . A AT . T A . . NNN . A . A . . . . A AA TA . . . . . . . . T . T . . . . . T . . . TAGAAAACACT CG . . . . . AATGCGCACAGA . . . G . . . . . . . GCA G . . . G . . . . . . . . . . T . . . . . . . G T . T . . . . . . . AAATAAAAGTG . . . T . . . . . . . . . . . . .
blockSeqs : . T . . . A . . . C T . A . . . A . . AC . T . . . AA . N . N . . . . A NN TA . . . . . . . . G . T . . . . . T . . . ACTGCATGC AC . . . . . TCT . . . T . . . . . . . TTA G . . . A . . . . . . . . . . C . . . . . . . C T . T . . . . . . . AAAAGAAAA . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . C T . T . . . . . . . . . . . . . . . . . . . . A A A . . . . . . . . G . . . . . . . . . . . TTACAA C . . . . . AGA . . . T . . . . . . . GCA G . . . G . . . . . . . . . . T . . . . . . . C T . A . . . . . . . AAAACAAAA . . . T . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . N . A . . . . . . . . T . . . . . . . . . . . TAAAT C . . . . . AGG . . . G . . . . . . . GCT G . . . G . . . . . . . . . . T . . . . . . . . T . T . . . . . . . AAAGA . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . ATGT A . . . . . . . . . T . . . . . . . GCT A . . . G . . . . . . . . . . C . . . . . . . . T . A . . . . . . . A . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . C . . . . . . . . . G . . . . . . . GCG G . . . G . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . T . . . . . . . GCA . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . G . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqCons : C** TC ** AAAAAA** ** A** ATC**** A*** AA*** AA***** ** ** ** ** TAAAAACCATGT************* ** ATGGCGACGATCT************************* **** GCA*************************** ********* ** T* AAAAGAAGTG******************** ** ** *** ***
originalCons : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAA-------AAAAAAAAAA--AGAGAAAAG-------AATCC-TTGTACTGGGACTT-CCTCATA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAA-A--TCAGTA--------TT-ACAATTACA-CG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCT--A--TGATTGG-AA----ATTTTT-TA-ATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGTT-TTGC-TTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T-TA-A----A-----TACA---TGTACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAAA-----------------G---G---------------GGGCCTGA-C-C------AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTCGCA-T---------G--CT-GT--TT-TCCG-TGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-----C--TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAATCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--A-AA-A-----------AAA--AGAA------G--GA-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
finalCons : TAAACTTGTAAAG--ATGTCTTC--GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAA-------AAAAAAAAAAA--GAGAAAAG-------AATCC-TTGTACTGGGACTT-CCTCATA-CATT--AA--AA-CTTTTTA--AAAA-------TATA--TATATAATC----GGG-TATCGGGAAA---TCAGTA--------TT-ACAATTACA-CG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATCTAA---TGATTGGAA-----ATTTTT-TA-ATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGTT-TTGC-TTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--TTAAAAACCATGT-------------ACGTAAA-CC-GTTT--AAAA---CAAC---AACAAAA-CACAAATGGCGACGATCT-------------------------GGGCCTGA-C-C------AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAAGCA---------------------------TT-GTTCGCA-T---------G--CT-GT--TT-TCCG-TGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-----C--TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTAT-AAATCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--A-AA-AAAAAGAAGTG--------------------A-AAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTCCCTCAACGCCAGAGGGCGCGTTATGTAAGCTTCCCTTGGTGCGAGTAGCGCACGGAACTCTGGGTAGAGAATG
Unaligned ( gi|24 ): TCTCTCATCACCAGAGGGCGCGTTACGTAAGCTTAGTAGCGCACGGAACTCTGGGTAGAGAATG
Unaligned ( gi|28 ): AAACATCAATGTATGCATGCAGTCAGTATGCGGATCAAA
Unaligned ( gi|31 ): TTCTCTTACCGCCAGAGGGCGCGTTGCGCAAGCTTC
Unaligned ( gi|32 ): GAGAGAAGCGCACGGAACTCTGGGTAGAGAATGGTG
Unaligned ( gi|33 ): TGCGAGTAGCGCATGGAACTCTGGGTAGAGAATG
Unaligned ( gi|34 ): TGCGAGTAGCGCATGGAACTCTGGGTAGAGAATG
Unaligned ( gi|35 ): TGAGAGAAGCGCACGGAACCCTGGGTAGAGAATG
Alignments
lowQualScore : 11111111111111111111 1111111111111111111111111111111111111 111111111111111111111111111111
lowQualScore : 111 1111 11 1111111 11111111 1111111 11 11 111 1111111 1111111 2222 22222222 1111111 11111 1 00000000000000000000 111 1111111111111111111111111111111111111 000000000000000000000000000000 111111111 11111111 111 11111111111 33333333333 11111 1111 11 111111
lowQualScore : 99 111 4444 5 11 5 77 6666666 22222222 0 4444444 4 4 3 5 4 4 55 00 4 000 6666666 777 3333333 5 3 5555 0 88888888 4 666 00 4 44 4 44 66 4 4 4 6666 1111111 77777 4 4 55 4 4 8 7 55 2 3 3 3 55 3 3 666 8 44 3 44 00000000000000000000 777 3 44 555 3 2222222222222222222222222222222222222 3 3 3 3 333 2 777777 2 444 5555 5555 2 111111111111111111111111111111 66 00 3 555555555 44 33 44 3 3 3 3 3 3 3 3 7 44444444 44 3 3 7 99999 55 3 2 7 3 3 1 44 3 000 6666666 4 4 99999999999 4 77777777777 4 00000 2222 55 3 00 3 444444 555 555 2 2 6666 77 3 555
lowQualScore : .. ... .... . .. . .. ....... ........ . ....... . . . . . . .. .. . ... ....... ... ....... . . .... . ........ . ... .. . .. . .. .. . . . .... ....... ..... . . .. . . . . .. . . . . .. . . ... . .. . .. .................... ... . .. ... . ..................................... . . . . ... . ...... . ... .... .... . .............................. .. .. . ......... .. .. .. . . . . . . . . . ........ .. . . . ..... .. . . . . . . .. . ... ....... . . ........... . ........... . ..... .... .. . .. . ...... ... ... . . .... .. . ...
lowQualScore : 22 333 2222 7 44 7 99 2222222 88888888 8 4444444 4 4 9 1 4 8 00 66 4 444 2222222 000 5555555 0 2 1111 1 11111111 4 111 66 4 77 4 77 11 4 4 4 7777 8888888 00000 4 4 55 0 0 0 3 00 0 6 3 6 00 6 6 444 8 22 1 22 88888888888888888888 666 1 22 444 3 2222222222222222222222222222222222222 3 3 3 3 888 9 777777 5 444 7777 7777 7 333333333333333333333333333333 55 77 1 444444444 22 88 22 1 1 3 3 3 3 6 6 3 44444444 66 3 3 3 11111 00 6 5 3 6 6 0 66 3 444 7777777 0 0 00000000000 0 22222222222 0 00000 9999 55 6 00 6 111111 888 000 9 7 1111 33 1 444
consensus : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAA-------AAAAAAAAAA--AGAGAAAAG-------AATCC-TTGTACTGGGACTT-CCTCATA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAA-A--TCAGTA--------TT-ACAATTACA-CG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATC-TA-ATGATTGG-AA----ATTTTT-TA-ATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGTT-TTGC-TTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T-TAAAAA--------CATGTACGTAAA-CC-GTTT--AAAA---CAACAACAAAA-CACAAA---T--GGC---G-A---CA-----G-A-----TCTGGG-CCTGA-C-C-AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTCGCA-T---------G--CT-GT--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-C------TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTA-TAAA-TCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--A-AA-A-----------AAA-AGAAG-------TG-AAAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
Reference ( family-119 ) : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAA-------AAAAAAAAAA--AGAGAAAAG-------AATCC-TTGTACTGGGACTT-CCTCATA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAA-A--TCAGTA--------TT-ACAATTACA-CG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATC-TA-ATGATTGG-AA----ATTTTT-TA-ATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGTT-TTGC-TTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T-TAAAAA---C----CATGTACGTAAA-CC-GTTT--AAAA---CAACAACAAAA-CACAAA---T--GGC---G-A---C------G-A-----TCTGGG-CCTGA-C-C-AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTCGCA-T---------G--CT-GT--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-C------TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTA-TAAA-TCCGC-CNCTGATTATT--TCAATT-AA---CACACGCCA--AA--A-AA-A-----------AAA-AGAAG-------TG-AAAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
gi|1 : AG--ATGTCTTAT-GCA----AT-CTAT-A-CCTC-----TACGAG-CTTCAAGAAAG-------AAAACCAAAA---GAGAAA-G-------AATCC-TAGTACTGGGACTT-CCT-ATA-C-TT--AACAAA-CTTTTT-TTAAAA-------TACA--TATATAGATAT-AGGG-TA--AGGAC-AGCTC-GTA--------TTTACAATTACA-CG-AAAAATTAA-C-ACCTTTA--TTCA-C-ACAATATCCTA-ATGATTGGTAA----AATTTT-TA-TTG-CTGTC-AAATCTATCGATTCAGTTA-TTTCCATTTTGACTAGTT-T-GC-TTTTTCAACT-GCATCT-GCA---TTTCAGT-ATAATGCTTTGTTTGACGTT-TAC-----------------------TA-GTAA--CC-GTTTTTAAAA---CAACA-CAAAA-CACAAA---TATGGCACAG-ATACC------GCG-----TTTGGGACCTGAACAC-AAGCATA-G-GTTGGTG------T-ATATGGCTT---T-TCGTCATGAC----GTCC-GGAATTTTTTTTTATAATTAGAGAAAATGC-A--TT-GTTCGCA-TT--------GACCT-AT--TT-CCG-GTGTA-TGTCA-GCA-GCGA-GGCGTGT-G-GATTG-GT-C------TA--TGATGCTGTAA-AAG-----TCAG--CAAAAAGATAACA-TCTAAAAACTTCCCGAGGGAGTGT-CGCCCTTA-TAAATTCCGCACACTG-TTATT--TCAATTAAA---CACACGCCA--AA--A-AA-A-----------AAA-AAAAG--------G-AAAAG-AAA-----AAA--T-TCAGC-ATCAACCTGCCAC-TT------AATACAGTC---TAACATCG-GCT-GACTCC----CTAAGC--TATTT-TATCCAAA
gi|10 : actggC-TA-ATGATTGG-TA----ATTCTT-TA--TG-CTGTC-AGATTT--T-ATTCA-TTA-TTTC-ATTT--GGTAGTT-T-GC-TTT--TAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--T----------------ATGT-----AA-CC-ATTT--AAAA---CAACAACAAAA-CACAAATC-T--GGC---G-AC--C------G-AAGCATTCTGGG-CCTGA-C-C-AAGCAGA-G-GTTG-TGTATATAT-ATAGTGTTTAAATCTCG----GAT----GTCC-GGAA------------------------caac
gi|10 : ------------------------GC-A--TT-GTTTGCA-T---------G--CT-GTATTT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGttttttaatttatatacatttatagaaaatgcattgtttgcatgctgtattttccgtgtatgtcagcagcgagacg
gi|11 : ctaatgattggtaattctttatgctgtcagattttattcattatttcatttggtagtttgcttttaactgcatctcctttccagttataatattttctgacgtttacatatgtaaccatttaaaacaacaacaaaacacaaatctggcgaccgaagcattctgggcctgaccaagcagaggttgtgtatatatatagtgtttaaatctcggatgtccggaattttttaatttatatacatttatagaaaatTATTTT--TTGACGTT-TACA--T--------------------ACGTAA--CA-GTTT--AAAA---CAACAACAAAA-CACAAA---TTTGGC---G-A---CATAAGCG-T-----TCTGGG-CCTGA-C-C-AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------T-----TT-TTTTATA-TATAGAAAATG--CT-AT--TT-TTC-GTGTA-TGTCA-GCA-GCGA-GACGTAT-G-GATTG-GT-C------TA--T-AT-CTGTAA-AGG-----TCGC--AAATAAGATAACATTCTAAAAA-TTTCCGACGGAGTGTGCGCACTTA-TAAA-TCTGT-CACTGATTACT--TCAATT-AA---CACACG
gi|12 : -ATAGTGCTT---TCTCA----GAC----GTCCCGGAATTTTTTAAAATAGAGAAGAT----GC-A--TTTGTTCGCA-T---------G--CT-AT--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GGCGTGT-G--ATTG-GT-C------TA--T-AT-CTGTAA-AAG-----TCGC--CAAAAAAATA-CATTCTAAAAA-TTCCCAAGGGAGTGTG-GCCTCTA-TAAG-TCCGC-CA-TGATTACT--TCAATT-AA---CACACGC-----A--A-AA-A-----------A---------------------AA-AAA-----AAA--T-TC--CTATCAACCTTTCACTTT------AATACAGT----T---ACTG-GCT-GA-TCC----CTAAGC--TTTTT-T---CAAAA
gi|13 : --T-AT-CTGTAA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTA-TAAA-TCCAC-CTCTGATTATT--TCAATT-AA---CACACGCCA--TA--A-AA-A-----------AAA-AGGAGAAAAAGCTGAAAAAA-AGA-----AAA--------A-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTGC----Cgctaa
gi|14 : TTTT--CTGACGTT-TACA--T--------------------ACGTAA--CC-GTTT--AAGAATTTGGCAACAGAA---------------------G---C------G-T-----TCTGGG-TCTGA-C-C-AAGCAGA-G-GTTG-TG------T-ATAGTGCTT---TGTCA----GAC----GTCC-GGAA------------------------TT-A--TT-TTT
gi|15 : AACTTGTAAAG--ATGTCTT-C-GTACGTAATACTATCA-CTT-CAAAATACGGG-TA--AAG-AAA-------AAAAAAAAGA--AGAGAAAAA-------AATC---TGTACTTGGACTT-CCTCAAA-CATTA-AA--AA-CTTTTatatatagaaaatgcattgttcgc
gi|16 : AAGAAAAAA--AGAGAAAAG-------AATCC-TTATACTGGGAAAT-CCTAATA-CATT--AAT-AA-CTTTTT-A-A-------------------ATA---AT-CGGG-TATCGGGAA--------TA----------------TATA-TG-AAAAAGTTA-C--CCCTTT--TTCA-C-A-AATATct
gi|17 : ctT--TCAATT-AATA-CACACGCCA--AA--A-AA-A-----------AAA-AGAAA-------AA-GAAAA-AGATAGAAAAA--T-TC--C-ATCA--CCTTCAC-TTC-----AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAA
gi|18 : CCCTTA-TAAA-TCCGC-CACTGATTACT--TCAAGT-AA---CACCCCCCT--AACCA-AC-ACCCCCCCCCCCAAT-AGAA-------------------A-----AAA--T-CC--C-ATTA--CCTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACgctaa
gi|19 : TTG-TG------T-ATAGTGCTT---TTTCG----GAC----GTCT-GGGA------------------------------TT--TTCTTA-T---------A-----------------TATA-TAT----------A-AA---AT-G-CATTG-----------TA--T-GT-CAGCAGCGAG-----CCGC--AAAAAAGATAACATTCT-AAAA-TTCCCG
gi|2 : TAAACTTGTAAAG--ATGTCTT-C-GTA----ATACTATCA-CTTTCAAAATACGGG-TT--AAGAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAGATAAAAAAATCC-TTGTACTGGGACTT-CCTCAAA-CATT--AA--AA-CTTTTT-A-AAAA-------TATA--TATATA---AT-CGGG-TATCGGGAAGA--TCAGTA--------TT-ACAATTACACCG-AAAAATTTA-C-ACCTTTT--TTCA-C-A-AATATC-T--ATGATTGG-AA----ATCTTT-TA-ATG-CTGTC-AAATTT--C-GTTCA-TTATTTTT-ATTT--GTTAGTT-TTGCTTTT--CAACT-GCATCT-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACATGT-CAAAAA---TATA-CATGTACGTAAA-CC-GTTT--AAAA---CAACAACAAAA-CACAA--------------------------------------GG-CCTGA-T-C-AAGCAGA-T-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-A--TT-GTTTGCA-T---------G--CT-GT--TT-TCC-GTGTA-TGTCA-GCA-GTGA-GACGTGT-G-GATTG-GT-T------TT--T-AT-CTGTAA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-ATTCCGAGGGAGTGTGCGCCCTTATTAAA-TCCAC-CTCTGATTATT--TCAATT-AA---CACACGCCATTAA--A-AA-A-----------AAA-AGAAGC------TG-AAAAA-AGA-----AAA--T-TC--C-ATCA--CTTTCAC-TTCACTGGAATACAGTCCTGT---ACTG-GCTGGACT-C----CTAAGC--TTTTT-T---CAAAA
gi|20 : TCA-CTTTCAAAATACGAG-CT--AAGAAAA-------AAAAA----------GAAACG-------AATTC-TTGTACTGGGACGT-TATCATA-CATTA-AA--AA-CTTTAT-A-TATA-------TATA--TATATA---
gi|21 : -ATTA--GTTAGTT-T-AC-TTT--CAACT-GTATTT-TCT---GTTCAGTTATAAAA---------ATGTTATTCA--T-TTACAA-------------ACGTAAA--C-ATTT--AAAA---CAta
gi|23 : ctga------T-ATAGTGCTT---TCTCG----GAC----GTCC-GGAATATTTTTATATATAGAAAAT----GC-G--TT-GTTCGCA-T---------G--CT-AT--TT-TCC-GT
gi|25 : -ATCA--CTTTCAC-TT------AATACAGTT---T---ACTG-GCT-GACTCC----CTAAGT--TTTTT-T---CCAAA
gi|26 : ---ACTGCACT-GACTCCGGCTCTAAGA--TTTTT-T---CAAAtgtta
gi|27 : TACAGTC---T---ATTG-GCT-GACTCC----CCAAGCT-TTTTT-T---CAAAAggctaaactt
gi|29 : CT-GACTCT----CTAAGC--TTTTT-T---CAAAAgctaa
gi|3 : ctgcaTGTAAAACCATGTCTT-C-GTA----ATACTATCA-CTT-CAAAATACGGGCTT--AAGAAAA-------AAAAAAAAAAGAAGAGAAAAG-------A-TCC-TTGTAC-GGGACTTTCCTCAAAACATT--AA--AAACTTTTT-A-AAAAAATATATTATA--TATATA----T-CGGT-TATCGGAAAGA--TCAGTAG-------TT-ACAATT-CA-CG-AAAAATTTAAC-ACCTTTT--TTCAACGA-AATATC-TA-ATGATTGG-AA----ATTTTT-TA-TTG-CTGTC-AAATTT--C-ATTCA-TGA-TTTT-ATTT--CTGAGTTCTTGC-TTT--CAACT-ACAT-T-CCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--TGTAAAAAATACA---CATGTACGTAA--CC-GTTT--AAAA---CAACAACAAAA-CACAAA---A--TGC---GCA---CA-----G-A--------AGG-CCTGA-C-C-AAGCAGA-T-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCT-GGAA------------------------GC-T--TT-GTTTGCA-T---------G--CT-GT--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGTGT-G-GATTG-GT-C------TA--T-AT-CTGTAA-AAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCGAGGGAGTGTG----------------CGC-CTCTGATTATT--TCAATT-AA---CACACGCCA--TT--A-AA-A-----------AAA-AGAAGC------TG-AAAAA-AAA-----AAA----TC--C-ATCA--CTTTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAAtctaaact
gi|30 : taaaa---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAAgctaa
gi|4 : AAATTGTAAAG--ATATCAT-T-GCA----ATACTATCA-CTTTCAAAATACGA--TT--CAGAAAA-------AA-----------GAGAAAAG-------AATCC-T-ATACTGGG-CTT-CCT-ATA-CATT--TA--AA-CTTTT--A-AAAA-------TATACATATATA---AT--AGG-TA-CTGGAA-A--TCAGTA--------TT-AC--------------------------CTTT--TTCA-C-A-AATATC-TAGATAAT--G-AATTGTATTTTT-TA--TG-TTGTC-AAATTT--C-ATTCA-TTA-TTTTCATTG--ATGAGTT-T-GC-TTT--CAACT-GCTTCT-CTT---T--CAGTTATAATATTTT--CTGACGTT-TACA--T--------------------ACGTAAATCC-GTTT--AAAA---CA-CAACAAAA-CACAAAATCT--GGC---G-A---CA-----G-AAGCGTTCTGGG-CCTGA-C---AAGCATA-G-GTTG-TG------T-ATAGTGCTT---TCTCA----GAC----GTCC-GGAATTTTTTTTTATAAATAGAAAAT--GCCA--TT-GTTC-CAGT---------G--CTAGT--TTCTCC-GTG-A-T-TCAAGCAAGCAC-GGCGTGT-GCGATTG-GG-T------CA--T--T-CTGATA-AAG-----TCGCACCAAAAAGATAACATTCT-AAAA-TTCCCGAGGGAGTGTGC-CCCTTA-TGAA-TCCG--CACTGACTACT--TCAATT-AATACCACCCGCCA--AA--A-AA-A-----------AAA-AACAA-------AA-AAAAATAGA-----AAA--A-TT--C-ATCA--C-TTCAC-TT------AATACAGTC---T---ACTG-GCT-GACTCC----CTAAGC--TTTTT-T---CAAAAcgctaaa
gi|5 : A-------GAAAAAAAAA--AGAGAAAGA-------GATCC-TTGTACTGGGACTT--CTCA-A-C-TT--AA--AA-ATTTTT---AAAA-------TAT---TATATC---ATATGGG-TATCGGGAA-----TAGTAT-------TT-ACAATTAAA-CG---AAATTTA-C-ACTTTTTCATTGA-T-C-AATATT----ATGATTG--------ATCTTT----ATT-CTGTC--AATTT--C-ATT---TTA-TATT-ATTT--GTTAG-T-TTGC-TTT--CA--TAGCATCT-CCT---T--CGATTATAG-ATTTT--CCTGCGTT-T-CA--T-TAGAAA---A----CAC-TACG-AAT-TCAATTT--AAAA---C--CAACAAAA-CA-AGA---T--GAC---A-C---C------G-A---------------AA-A-A-AAACAGA-GTGTTG-T----------TAGTGC-T---TCTCG----GAC----G-AC-GG--------------------------GC-T--AT-ATTTACA-T---------G--CT--T--TT-CCC-GTGTATTGTCA--CA-GCGA-CCCGTGTGG-GATTGCGT-T----------T-AT-CTGTAA-AAT-----ATGC--C-ACAAGATAACATTCTAAAAA-TT-CCGAGGG---GTGGGCCCTTA-GTAA-TC--T-CTCTCATTATT--T-AATT-AA----ACACGATA--AA--ATAACA-----------AAATAAAAG-------TG-AAAAA-AGA-----AAA--T-TC--C-GT----CCTTCA---T------AATACAGTT---T----CTG-GCT-A----------TAAGC--TTTTTGT---CAAAgct
gi|6 : T-ACATGTATA-TT-AAAAATTTA-C-ACCTTTT----CA-C-A-AAATTC-TA-ACGATTGG-AA----ATTTTTATGTATG-CTGTC-AAATTT--C-ATTCA-TTA-TTTT-ATTT--GTTAGGT-TTGC-TTT--CAACT-GCATCT-CCT---T-CCAGTTATAATATTTT--CTGACGTT-TACA--T------A---CTG--CATGCACGTAAC-GT-GTTT--AAAA---CAACT---------C------T--AGC---G-A---CA-----G-A--------AGG-CCTGA-C-C-AAGCAGA-T-GTTG-TG------T-ATAGTGCTT---TCTCG----GAC----GTCT-GGAATTTTTCATAAAAT-----------GC-AATTT-GGTTGCA-T---------G--CT-GT--TT-TTCGGTGTA-TGTC--GCA-GCGA-GACGTGT-G-GATTG-GTACTGTCGGTA--T-AT-CTGTAA-AAAAAAATTCGC--CACAAACATAACATTCTAAAAA-TTCCCGAGGGAGTGTGCGCCCTTATTAAA-TCCGC-CACTGATTATTCATTATTT-AA---CACACGCC---AT--A-AA-A-----------AAA-AGA------------AAAAA-AGA-----AAAACTATC--C-ATCT--CTCTTAC-TT------ATTACAGTC---T---ACT--GCT-GACTCC----CTAAGCTTTTTTT-T---CAAAgc
gi|7 : ataTAAACTTGTAAAG--ATGTCTT-TTGTA----ATACTATCAGCTTT-----TACGAG-TT--AAGAAAA-------AAAAAA-------GAGAAAAG-------AATCCCTTGTACTTGGACTT-CCTCATA-CTTTAAAA--AA-CTTTTTAA-AAAA-------TATA--TTTATA---A--CGGGTTATCGGGAA-A--TCAGTACATGTAGTTT-ACAA-TACA-CGAAAAAATTTA-CAACCTTTT--TTCA-C-A-AATATC-TA-ATGATTGG--A----ATGTT-----ATGACTGTCAAAATTT--C-ATTCA-TTATTTTT-ATTT--GTTAAGT-TTGA-TTT--CAACT-GCATCT-CCCTTGTTCCAGTTAT--------------CGTT------------AAA---T----------CGTAAA--C-GTTT--AAA-----AACAACAAAA-CAGAAAATCT--GGC---G-A---CA-----G-ATGCGTTCTGGG-CCTGA-C-CAAAGCAGA-G-GTTG-TG------TAATAGTGCTT---ACTTT----GACCGTAGTCC-GGAA------------------------
gi|8 : GG-TATCGGGAATA--TCAGTA--------TT-NNNNNNNNN-NN-NNNNNNNNN-N-NNNNNNN--NNNN-N-N-NNNNNN-NN-NNNNNNNN-NN----NNNNNN-NN-NNN-NNNNN-N---TT--C-ATTCA-TTA-TTT--ATTT--GT-AGTT-T-GC-TTT--CAACT-GCATCT-CCT---T-CCAGTTATA-TATTT---CTGATGTT-TACA--TGTAAAAA---TACAACATGTACGTAA--CC-TTTT--AAAA---CAACAACAAAAACACAAA------------------------------------GGG-C-TGA-T-C-AA-CAGA-T-GTTG-TG------T-A-AGTGCTT---TCTCG----GAC----GTCC-GGAA------------------------GC-G--TT--TTTGCA-T---------G--CT-GC--TT-TCC-GTGTA-TGTCA-GCA-GCGA-GACGTAT-G-GATTG-GTGC------TAACT-GT-TT-TAATAAA-----TCGC--CAAAAAGATAACATTCTAAAAA-TTCCCAAATGAGTGTGCGCCCTTA-TAAA-TCCAC-CTCTGATTATT--TCAATT-AA---CACACGCtttttttttatagtaaagtgaatt
gi|9 : tcTT--C-ATTCA-TCA-TTTT-ATTT--GTTA--T-TTGC-TTT--CAACT-GCATCTTCCT---TTCCAGTTATAATATTTT--CTGACGTT-TACA--TGTAAAAAATACA---CATGTACGTAAA-CC-GTTT--AAAA---CAACAACAAAA-CACAA--------------------------------------GG-CCTGA-T-C-AAGCAGATG-GTTG-TG------T-ATA---CAT---TCTC
gi|9 : -G-GTTG-TG------T-ATAGTGCTT---TCTCG-----AC----GTCC-GGAA------------------------GC-A--T--------------------------GT--TT--CC-GTGTA-TGTCA-GCA-GCGAGGACGTGT-G-GATTGCGT-C------TA--T-AT--TGTAtcaccagagggcgcgtagtagttgagagaagcgcacggaccctggtagagaatggttgtgtatagtgctttctcgacgtccggaagcatgtttccgtgtatgtcagcagcgaggacgtgtggattgcgtctatattgta
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTCCCTCAACGCCAGAGGGCGCGTTATGTAAGCTTCCCTTGGTGCGAGTAGCGCACGGAACTCTGGGTAGAGAATG
Unaligned ( gi|24 ): TCTCTCATCACCAGAGGGCGCGTTACGTAAGCTTAGTAGCGCACGGAACTCTGGGTAGAGAATG
Unaligned ( gi|28 ): AAACATCAATGTATGCATGCAGTCAGTATGCGGATCAAA
Unaligned ( gi|31 ): TTCTCTTACCGCCAGAGGGCGCGTTGCGCAAGCTTC
Unaligned ( gi|32 ): GAGAGAAGCGCACGGAACTCTGGGTAGAGAATGGTG
Unaligned ( gi|33 ): TGCGAGTAGCGCATGGAACTCTGGGTAGAGAATG
Unaligned ( gi|34 ): TGCGAGTAGCGCATGGAACTCTGGGTAGAGAATG
Unaligned ( gi|35 ): TGAGAGAAGCGCACGGAACCCTGGGTAGAGAATG