lowQualScore : 1111111111111111
lowQualScore : 666 2 1 1 333 333 222 55555 1 333 2 11 11 22 111 1 11 1 1 2222 111 11111 33333333333333333333333333333333333333 11 111 1111 2222222222 33333333333333333 2 111111 3333 11111 11 888888888888888888888888888888888888888888 11 222222 111 1111 22222222222 1 1 44444444444444 11111 11 1 6666666666666666 2222 111 1111 444444444444444 33 11 1 888888888888 1 44444 111 1111 33333333 99999999999999999 11 1
lowQualScore : 555 4 0 5 5 555 4 555 111 4 00000 5 555 0 6 88 44 00 6 333 0 33 0 3 0 0000 777 8 66666 6 44444444444444444444444444444444444444 5 66 66 33 111 4 1111 5 999999 66 7777 8888888888 66 1 3 11111111111111111 2 6 6 1 6 222222 5555 33333 99 6 11 444444444444444444444444444444444444444444 11 22 777777 444 7777 33333333333 8 0 0 2 33333333333333 88888 44 0 5555555555555555 1111 444 0 0 6666 000000000000000 8 11 88 3 222222222222 3 11111 88 0 8 6 8 11 0 444 1 7777 44444444 6 55555555555555555 22 7
lowQualScore : ... . . . . ... . ... ... . ..... . ... . . .. .. .. . ... . .. . . . .... ... . ..... . ...................................... . .. .. .. ... . .... . ...... .. .... .......... .. . . ................. . . . . . ...... .... ..... .. . .. .......................................... .. .. ...... ... .... ........... . . . . .............. ..... .. . ................ .... ... . . .... ............... . .. .. . ............ . ..... .. . . . . .. . ... . .... ........ . ................. .. .
lowQualScore : 555 0 0 5 0 000 0 000 000 0 00000 0 000 0 0 00 77 00 7 777 0 88 0 2 0 0000 555 0 77777 7 11111111111111111111111111111111111111 0 99 99 99 222 4 1111 0 888888 99 6666 9999999999 99 7 2 11111111111111111 2 7 7 0 7 333333 7777 00000 22 7 22 666666666666666666666666666666666666666666 22 00 222222 000 4444 22222222222 0 0 0 5 77777777777777 55555 00 0 0000000000000000 2222 000 8 8 0000 888888888888888 8 77 33 3 777777777777 3 00000 88 8 0 8 0 22 8 000 4 0000 55555555 0 00000000000000000 00 0
consensus : AAATTCTCAAAG--CTTCNGCTCTTGATATTCCTCTGCCCATTTCANGGAATCTGCAGAGTCATGGTGANGATTTTTAACAGTCTGGAAATTGAAAGTCAACAACTTCTAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCTACA-NTTT---AC-AT-----TA-AAGT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC-CA-ACTC--T-CACACTCG-TG-GT---CTA--TTGA-C-GGG-TC--A-ACA--GTTTACGAACTGTTG-ATCA-GGCAAT--T--GTTCAANTTCTATT-GGCTA-CGTAGGT-CGCGTGATTCTTGT-GGTCTGCTTC-TT--G-TTACGTAATGGNAAGGT----TAACT---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTACCT-A-AG---CAGAA--ACGTAAAATATT-TTATT-AATTAAGATA-TTA-AT-TTGGT----ATG-TT----TATTTTT---T-TTN-AACTA-GTGTTNNTTTCGATGA----TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTCGAAA-AAAAA-A--C----CA----TTCCAAACGCGGATCCAG-CGCCGG--AAC-AGA-------TCA--CATTGT-TCTCGAAC--A-AGTCAATAACTGTA-TGATATGCATA-TGGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT-------AGTAAACTAAACTANANTCAANGTGTTCTTGGGCTTAGCACCCGAGCATGAC
Reference ( gi|2 ) : AAATTCTTAAAAACTTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAGAGTTTTC-AGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCTACA-ATTT---AC-AT-----TA-AAGT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT-TA-ACTC--T-CACACTCG-TG-AT---CTA--TTGA-C-GGGTTC--A-A-A--GTTTACGAACTGTTG-ATCAGGGCAAT--T--GTTTAATTTCTA-T-GGCTA-CATAGGT-TGTTCGATTCTTGT-GCTCTGCTTCTTT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTATCT-A-AG---CAGAA--ACATAAAATATT-TTATTAAATTAAGATA-TTA-AT-TTGGTA---ATG-TT----TATTTTT---T-TTT-AACTA-GTGT----------------TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTCGGGG-AAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA---A-AGTCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATC-------AGTAAGCTAAACT-CACT---TTTGTTA--GGGCTTAGCATTCGAGCTTGAC
gi|3 : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAGATTTTC-AGAGTATCCTT-ACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCTACA-ATTT---AC-AT-----TA-AAGT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT-TA-ACTC--T-CACACTCG-TG-AT---CTA--TTGA-C-GGGTCA--A-A-A--GTTTACGAACTGTTG-ATCA-GGCAAT--T--GTTTAATTTCTATT-GGCTA-CATAGGT-TGTTCGATTCTTG----TCTGCTTCTTT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAA---TAATG-ATAGAATACAAA-TTAGCAGATGATTATCTAA-AG---CAGAA--ACATAAAATATT-TTATTAATTAAAGATA-TTA-AT-TTGGT----ATG--T----TATTTTT---T-TTT-AACTA-GTGT----------------TGTAC----GTAATC---AGACAGT-CCGTTAAAGTTCGGGGAAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA---A-AGTCAATAACTGTA-TGATATGCA-A-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATC-------
gi|1 : tgtAAATTCTCAAAG---TTCAACTCTTGA-ATTCCT-TGCCTATTTCATGAAATCTGCAA---TATAGTAATGATTTTTAA-AGTTTGGAAATTGAAAGTCAACAACTTCTAAATTGTAAAAGTTTTCTGGAGTATCCTTT-CCTGCAAACTGTATCCATACAA-AATCGGATAT-TGT--TATAAAGCTTAATTTTTTCCCTACT-TTTTTAAACAAT-----TA-AAGT-------AATTTG---CCATTCAGA--AC--ACAATTTTT-TT--AA--CTGTT-AAC-TA-ACTC--TCCACACTCG-TGAAT---ACAATTTGA-C-GGGGTCAAA-A-A--GTTC-CGAACCGTTGAATCA-GGCAAT--TGGGTTTAATTTCTATT-GGCTAGCATAGGT-TCTTTGATTCTTTT-GGTCTGCTTCTTTGGG-TTATGTAATGG--AGGT----TA----------CTGA-TTAAT--------TAC-AATTTAGCAGA-GATTACCT---AG---CAG-A--ACATAAAA-----TTATTTAATCAAGATATTTG-AT-TTGGT----ATG-TTTTAATATTTTTCCAT-TTTAAACTA-GTGTTATTTTCGTTGATAAATGTACGTAGGTAATCAGAAGACAA-CGCGTTAAGTTTCGAAA-AAAAA-A--A----AAAAACTTCCAAACGCGGATCCAGGCGCCGG--GCCAAGA-------TCA---ATTGTCTCTCGAAC--ACAGTCAATAACTGTA--GATATGCATA-TAGG-TAGTGATAGATA--CAAAAAAACCTTTTGGAAGAACAATT-------AG
gi|9 : tttgattaatttaaaaccgcaaaatggaaaaaaattcaaatttttggaaaaactatgcagatgtatatgttaacggggcctaatccattcaattgctcatttcatgaaataagcagattttttttgcaagattcatcgaaaaaggcaagcaaaattacctgttcatgaaataggcaaaacccgctgctgatttcatgaaataggcaaacatatattgcctagtacaaatgaaataggcaaagtgtTTGTAAAAGTTATC-TGAGAATCCTTTATCTG--AACT-----CACAC--TCGTTGAAAACATGCAACATACA-CAT-ATTTTTT-CCTACATTTTT---AT-ATAAAACTA-ATGTGATTAAGAA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC-TA-
gi|7 : T-TGT--TATGAA-CTAAAAGTTGT-ACTG---ATAT---AG-AT-----TAGAAGT-------AT-------C----------------------T-TT--AA--CTGTTAAAC-CACACTC--T-AACACTCGCTG-AA---CTA--TTGA-C-GG--TC--A-ACA--GT------------------------C--T--GTTCAAATTCTATT-GGTTA-CGCAGGT-CGCGTGATTCTTGTAG--CTG-----TC--G-TTACATAATGGATATGTTCTCTGATT---GATGCAg
gi|4 : ttC-AT-----TA-AAGT-------AATACCATTCC------AGAACCAA------TTATT--AGTTCTGTAAAACATA-ACACAATACACACATA-CG-ATATTCTC--TTGA----GGCTC--A-A-AAAGTATACGAACTGTTG-ATCA-GGCAAT--T--GTTTATCTAATA-T-GG-TA-CATAGGTATGCTTGATT-TCAT-GGTCTGCTTC-TT--G-TTATGTAAT-GGAAGGT----TAAT----------GA-TT-AT--ACAAAAT------TTAGCAGATGATTACCT-ATAGTCTCAG----TTATAAATCATT-T------ATTAAAATG-TGA-TT-TTG-----------T----TATTCTT---TATTA-AACTATGTATTCGTTGATAA------TGTAC----GTAATC---AGACAGTCCCGTT-AAGTTCGAAA-AAAAACA--CCAAACA----TTCCAAACGCGGATCCAG-CGCCGGGCAAC-AGA------------CATTGT-TCTCGAACACA-GTTCAATAACTGTA-TGATATGCATA-T-GG-TAGTGATAGATATTC---AAAACCTTTT----GAATAAT
gi|6 : T-----TA-ATGG-------AA-------CC------A--AC--A------TT-TTTTAA--TTGT--AA---A-ACTC--T-CACACTCG-TG-GA---CTA--TTGA-C-TGG-TC--A-ACA--GTTTACGAACTGTTG-ACC-GGACAGA--A--GTCCGAATTCTATT-GGCTA-CGTAAGT-CACATGATTCTTGT-TAT-TG--TTGTT--G-TTATGTAATGGCGATGT----TCACT---------GA-TTAATGCATG-------AA-TTATTTGAGGAAAAGCA-G-AG---CAAAA--ACGCAAAAAATA-TTGTC-AATTAGGATA-Tt
gi|12 : att-------AA-------CC------A--AC--A------TT-TG--AA--TTATTAAAC-CA-ATTC--A-CACACTCT-TG-GT---TTA--TTGA-C-CGG-TC--A-ACA--GTTc
gi|13 : tag-------AG-------CC------A--AC--A------TT-CT--AA--CTA---AAT-CA-ATGC--T-CAC--TCG-TG-GT---TTG--TTGA-CTGGG--C--A-ATA--GTgtgccctatctctattggttacgcaaatcacgtgat
gi|17 : agAAC-CA-ACTC--T-CACGCTCG-TG-GT---CTT--TTGAGC-AG--TC--ATT-A--GTTTACGAGCTGTTA-Agactattatagtctgccctatttctaatggcgacgcaagtc
gi|5 : CGAACTGTTG-G-CTGGGCACTAGTCAGTCCTATTTTTA-TTGGCTA-TGCAAGT-CACGTGATTCTTG--G-TCTACTGCATT--GTTTACGAAATGACAAGGT----TCACTTGAAATGCAGACTT--TG-GTAG-ATGA-AA---AGCAG-------------AG---CAGAATCACGAAAAATAGCATTATT-AATTAGGATA-TTAGATATAGGTATGTATGATT----TAT
gi|14 : ---ATG-TT----TAATTCT---T-TTA-AACTA-GTGTATCCGTTGATAAA---TGTAC----GTAATC---ATACAGTCCCGTTAAAGTTgcagttataagtatatttaatttttatgaactagtgaatacgttgacaaatgtacgctgtcacaatgtcctgtaaagtt
gi|16 : gtAATC---AGAGAGTCCCGTTAAAGTTAAAAA-AAAAA-AACC----CA----TTCCAAACGCGGATCC
gi|10 : GTCAATAACTGTAGTAACATGCATAATGGGCTGTTGCGAAATATTT---AAATCCCTTT----GAACCATTTTGGTAAACTAAACTAAACT-CAAT---AGTGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|11 : TCAATAACTGTA-TAACATGCATA-TGGG-CTGTGCGAAATATTT---AAATCCCTTT----GAACATTT-------TGTAAACTAAACTAAACTCAATATGTTCTTGGGCTTAGCACCCGAGCATGAC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TAGTCCTGTCCCATTCTATTGGCTCGACGTCACGTGATGTCTTAGTCTGCTGCTATGTTTACGTAATCAACAAATGGCCGAGGTTTACTATTTGTATGAATGAACAAGAGACTTTACTTTAAACGAACGGAGAGCAGAAATACGAAA
Unaligned ( gi|15 ): CAAAATACTTAAAAAATGTGATGCACTCTATTTTTTTCTTATATAAATCTAATGTGAT
Alignments
lowQualScore : 3333 2 333 333 55555 333 2 11 11 11 222 11111 2222222222222222 111111 111111 111111 222222222222222222 111 1 11 1111 22222222222222222222222222222222 11 111 22222 5555555555555555555555555555555555 1111 88888888888888888 1111 111 2222222222222 22 11 1 88888888888 1 222 111 1111 111 222222
lowQualScore : 0 1111 1 3 7 0 6 0 777 1 777 0 7 1 11111 6 777 3 44 66 22 2 333 8 11 8 0 8 22 222 6 5 44444 4444444444444444 222222 66 66 222222 4 66 66 44 111111 4 4 8 4 66 55 4 7 4 444 000000000000000000 2 6 4 4 4 1 4 2 4 66 3 0 2 5 5 888 0 22 2222 7 99999999999999999999999999999999 7 3 22 6 111 3 99 2 22222 6 6 6 6 8 8 6 6666666666666666666666666666666666 4444 6 1 6 99 44444444444444444 4444 000 8 8 6666666666666 55 33 0 3 66666666666 0 666 6 6 6 6 6 111 4444 222 88 1 222222 7
lowQualScore : . .... . . . . . . ... . ... . . . ..... . ... . .. .. .. . ... . .. . . . .. ... . . ..... ................ ...... .. .. ...... . .. .. .. ...... . . . . .. .. . . . ... .................. . . . . . . . . . .. . . . . . ... . .. .... . ................................ . . .. . ... . .. . ..... . . . . . . . .................................. .... . . . .. ................. .... ... . . ............. .. .. . . ........... . ... . . . . . ... .... ... .. . ...... .
lowQualScore : 7 0000 0 7 3 7 7 7 777 0 333 7 3 0 77777 7 333 3 22 55 55 5 555 0 00 0 8 0 00 000 7 7 33333 9999999999999999 888888 11 11 888888 4 11 11 44 555555 0 4 9 4 11 66 4 4 4 666 333333333333333333 7 3 0 0 0 9 0 9 4 55 4 1 5 0 0 888 0 44 1111 0 22222222222222222222222222222222 2 7 33 7 777 5 22 2 00000 7 7 7 7 0 0 7 5555555555555555555555555555555555 2222 7 0 7 22 88888888888888888 2222 000 0 0 0000000000000 00 88 0 2 00000000000 0 000 7 7 7 3 7 777 2222 222 33 0 777777 3
consensus : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCTACAATTTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-GGGT-CAANA-GTTTACGAACTGTTG-ATCGGG-CAAT--T--GTCCNATTTCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTC-T-TT--G-TTACGTAATGGNAAGGT----TAACT---GATGCAGA-TTAATG-ATAGAATACAA-TTAGCAGATGATTACCTA-A-G---CAGAA--ACGTAAAATAT--TTA-TTAA-TTAA-GATA-TTA-AT-TTGGTA-TG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG--TTC-TT--GAT-A----A-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTCGAA-AAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAAT-NTGTTCTTGGGCTTAGCACCCGAGCATGAC
Reference ( family-11865 ) : AAATTCTCAAAG--CTTCNGCTCTTGATATTCCTCTGCCCATTTCANGGAATCTGCAGAGTCATGGTGANGATTTTTAACAGTCTGGAAATTGAAAGTCAACAACTTCTAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCTACANTTT---AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-GGGT-CAACA-GTTTACGAACTGTTG-ATCAGG-CAAT--T--GTTCAANTTCT-AT-TGGCTA-CGTAGGT-CGCGTGAT-TCTTGTGGTCTGCTTC-T-T---G-TTACGTAATGGNAAGGT----TAACT---GATGCAGA-TTAATG-ATAGAATACAA-TTAGCAGATGATTACCTA-A-G---CAGAA--ACGTAAAATATT-TTA-TTAA-TTAA-GATA-TTA-AT-TTGGTA-TG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG--TTNNTTTCGAT-G----A-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTCGAA-AAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATC-------A--CATTGT-TCTCGAACA-AG-TCAATAACTGTA-TGATATGCATA-TGGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTANANTCAAN-GTGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|1 : AAATTCTCAAAG---TTCAACTCTTGA-ATTCCT-TGCCTATTTCATGAAATCTGCAA---TATAGTAATGATTTTTAA-AGTTTGGAAATTGAAAGTCAACAACTTCTAAATTGTAAAAGTTTTCTGGAGTATCCTTT-CCTGCAAACTGTATCCATACAA-AATCGGATAT-TGT--TATAAAGCTTAATTTTTTCCCTACTTTTTTAAACAATTA-AA-----GT-------AATTTG---CCATTCAGA--AC--ACAATTTTT-TT--AA--CTGTT-AAC------TA-ACTCTCCACACTCG-TGAATACAATTTGACGGGGT-CAAAA-AGTTCCGAACCGTTGAATCAGG-CAAT--TGGGTTTAATTTCT-AT-TGGCTAGCATAGGT-TCTTTGAT-TCTTTTGGTCTGCTTC-T-TTGGG-TTATGTAATGG--AGGT----T-ACT---------GA-TTAAT--------TACAATTTAGCAGA-GATTACCT--A-G---CAG-A--ACATAAAA-----TTATTTAA-TCAA-GATATTTG-AT-TTGGTA-TG-----TTTTAATAT--------------------TTTTCCATT-TTAAACTA-GTG--TTATTTTCGTT-GATAAA-TGTACGTAGGTAATCAGAAGACAA-CGCGTTAAGTTTCGAA-AAAAAA-A--A----AAAAACTTCCAAACGCGGATCCAGGCGCCGG--GCCAAGATC-------A---ATTGTCTCTCGAACACAG-TCAATAACTGTA--GATATGCATA-TAGG-TAGTGATAGATA--CAAAAAAACCTTTTGGAAGAACAATT--AG
gi|10 : tttgattaatttaaaaccgcaaaatggaaaaaaattcaaatttttggaaaaactatgcagatgtatatgttaacggggcctaatccattcaattgctcatttcatgaaataagcagattttttttgcaagattcatcgaaaaaggcaagcaaaattacctgttcatgaaataggcaaaacccgctgctgatttcatgaaataggcaaacatatattgcctagtacaaatgaaataggcaaagtgtG-TCAATAACTGTAGTAACATGCATAATGGGCTGTTGCGAAATATTT---AAATCCCTTT----GAACCATTTTGGTAAACTAAACTAAACTCAATAGTGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|11 : -TCAATAACTGTA-TAACATGCATA-TGGG-CTGTGCGAAATATTT---AAATCCCTTT----GAACATTT--TGTAAACTAAACTAAACTCAAT-ATGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|12 : -------AA-------CC------A--AC--A------TT-TG--AA--TTATTAAAC------CA-ATTCA-CACACTCT-TG-GTTTA--TTGAC-CGGT-CAACA-GTT---G----------------------T--GCCCTATCTCT-AT-TGGTTA-CGCAAAT-CACGTGAT-
gi|13 : tag-------AG-------CC------A--AC--A------TT-CT--AA--CT---AAAT------CA-ATGCT-CAC--TCG-TG-GTTTG--TTGAC-TGGG-CAATA-GT-----GACTATT--AT-AGT-C-----T--GCCCTATTTCT-AA-TGGCGA-CGCAAGT-C
gi|14 : agGTA-TG-----TT----TAA--------------------TTC----TT-TTAAACTA-GTG--TATCCGTTGAT-A----AATGTAC----GTAATC---ATACAGTCCCGTTAAAGTT
gi|16 : AATC---AGAGAGTCCCGTTAAAGTTAAAA-AAAAAA-AACC----CA----TTCCAAACGCGGATCC
gi|17 : AAC------CA-ACTCT-CACGCTCG-TG-GTCTT--TTGAG-CAGT-CATTA-GTTTACGAGCTGTTA-A
gi|2 : AAATTCTTAAAAACTTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAGAGTTTTC-AGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCTACAATTT---AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT------TA-ACTCT-CACACTCG-TG-ATCTA--TTGAC-GGGTTCAA-A-GTTTACGAACTGTTG-ATCAGGGCAAT--T--GTTTAATTTCT-AT--GGCTA-CATAGGT-TGTTCGAT-TCTTGTGCTCTGCTTC-T-TT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAGA-TTAATG-ATAGAATACAA-TTAGCAGATGATTATCTA-A-G---CAGAA--ACATAAAATATT-TTA-TTAAATTAA-GATA-TTA-AT-TTGGTAATG-----TT----TAT--------------------TTT----TT-TTTAACTA-GTG--TT------------------GTAC----GTAATC---AGACAGTCCCGTTAAAGTTCGGG-GAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA-A-AG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATC--AGTAAGCTAAACT-CACT---T-TTGTTA--GGGCTTAGCATTCGAGCTTGAC
gi|3 : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAGATTTTC-AGAGTATCCTT-ACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCTACAATTT---AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT------TA-ACTCT-CACACTCG-TG-ATCTA--TTGAC-GGGT-CAAAA-GTTTACGAACTGTTG-ATCAGG-CAAT--T--GTTTAATTTCT-AT-TGGCTA-CATAGGT-TGTTCGAT-TCTTGT---CTGCTTC-T-TT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAA---TAATG-ATAGAATACAAATTAGCAGATGATTATCTA-AAG---CAGAA--ACATAAAATATT-TTA-TTAA-TTAAAGATA-TTA-AT-TTGGTA-TG-----TT-----AT--------------------TTT----TT-TTTAACTA-GTG--TT------------------GTAC----GTAATC---AGACAGTCC-GTTAAAGTTCGGGGAAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA-A-AG-TCAATAACTGTA-TGATATGCA-A-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAAT
gi|4 : tgtC-ATTA-AA-----GT-------AATACCATTCC------AGAACCAA------TTATT--AGTTCTGTAAAACATAACACA-ATACA-CACATACGATA-TTCTC--TTGA--GGCT-CAAAAAGTATACGAACTGTTG-ATCAGG-CAAT--T--GTTTA---TCTAATATGG-TA-CATAGGTATGCTTGAT-T-TCATGGTCTGCTTC-T-T---G-TTATGTAATGG-AAGGT----TAAT----------GA-TT-AT--ACAAAAT-----TTAGCAGATGATTACCTATA-GTCTCAGTT--A--TAAA------TCA-TTTA-TTAA-AATG-TGA-TT-TTG------------T----TAT--------------------TCT----TTATTAAACTATGTA--TTCGTT--GAT-A----A-TGTAC----GTAATC---AGACAGTCCCGTT-AAGTTCGAA-AAAAAACA--CCAAACA----TTCCAAACGCGGATCCA-GCGCCGGGCAAC-AG----------A--CATTGT-TCTCGAACACAGTTCAATAACTGTA-TGATATGCATA-T-GG-TAGTGATAGATATTC---AAAACCTTTT----GAATAATT--c
gi|5 : CGAACTGTTG-GCTGGG-CACTAGTCAGTCCTATTTTT-AT-TGGCTA-TGCAAGT-CACGTGAT-TCT--TGGTCTACTGCAT-T---GTTTACGAAATGACAAGGT----TCACTTGAAATGCAGACTT--TG-GTAG-ATGAAA---AGCAG------------A-G---CAGAATCACGAAAAATAGCATTA-TTAA-TTAG-GATA-TTAGATATAGGTA-TGTATGATT----TATGCAGTTATAAGTATATTTAATTT----TT-ATGAACTA-GTGAATACGTT--GACAA----A-TGTAC----GCTGTC---ACAATGTCCTG-TAAAGTT
gi|6 : TTA-AT-----GG-------AA-------CC------A--AC--A------TT-TTTTAA--TTGT--AA--------A-ACTCT-CACACTCG-TG-GACTA--TTGAC-TGGT-CAACA-GTTTACGAACTGTTG-ACCGGA-CAGA--A--GTCCGAATTCT-AT-TGGCTA-CGTAAGT-CACATGAT-TCTTGTTAT-TG-TTG-T-T---G-TTATGTAATGGCGATGT----TCACT---------GA-TTAATGCATG------AA-TTATTTGAGGAAAAGCAG-A-G---CAAAA--ACGCAAAAAATA-TTG-TCAA-TTAG-GATA-T
gi|7 : attT-TGT--TATGAA-CTAAAAGTTGT-ACTG--ATAT---AG-ATTAGAA-----GT-------AT-------C----------------------T-TT--AA--CTGTTAAAC------CACACTCT-AACACTCGCTG-AACTA--TTGAC-GG-T-CAACA-GTCT----------------------------GTTCAAATTCT-AT-TGGTTA-CGCAGGT-CGCGTGAT-TCTTGTAG-CTG-----T-C---G-TTACATAATGGATATGTTCTCTGATT---GATGCAc
gi|8 : tt--T--GTCCCA-TTCT-AT-TGGCT--CG-ACGT-CACGTGATGTCT--TAGTCTGCTGC-TAT---GTTTACGTAAT
gi|9 : tagtccTTGTAAAAGTTATC-TGAGAATCCTTTATCTG--AACT-----CACAC--TCGTTGAAAACATGCAACATACA-CATA-TTTTTT-CCTACATTTTT--AT-ATAA-AACTAATGTGATTAAGAA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------TA-caacaaatggccgaggtttactatttgtatgaatgaacaagagactttactttaaacgaacggagagcagaaatacgaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAAAATACTTAAAAAATGTGATGCACTCTATTTTTTTCTTATATAAATCTAATGTGAT
Alignments
lowQualScore : 333 1 222 222 33333 222 1 11 11 11 2222222 11111 2222222222222222 111111 111111 111111 222222222222222222 11 1 11 1111 333333333333333333333333333333 111 111 333333 5555555555555555555555555555555555 1111 77777777777777777777 1111 111 2222222222222 22 11 1 333333333333 1 222 111 1111 111 11
lowQualScore : 000 3 7 6 333 333 7 33333 6 333 3 44 3 3 22 2 333 8 11 8 0 8 8 0000000 6 5 44444 4444444444444444 222222 66 66 222222 4 66 66 44 111111 4 4 8 4 66 55 1 4 888 777777777777777777 2 2 4 4 4 4 3 4 2 4 22 0 2 6 66 0 22 2222 7 222222222222222222222222222222 6 7 3 999 111 3 99 2 888888 6 6 6 6 8 8 6 6666666666666666666666666666666666 4444 6 1 6 77777777777777777777 4444 000 8 8 6666666666666 55 33 0 333333333333 0 111 6 6 6 4 6 111 4444 222 7 6 44 7
lowQualScore : ... . . . ... ... . ..... . ... . .. . . .. . ... . .. . . . . ....... . . ..... ................ ...... .. .. ...... . .. .. .. ...... . . . . .. .. . . ... .................. . . . . . . . . . . .. . . . .. . .. .... . .............................. . . . ... ... . .. . ...... . . . . . . . .................................. .... . . . .................... .... ... . . ............. .. .. . ............ . ... . . . . . ... .... ... . . .. .
lowQualScore : 333 3 3 7 333 333 3 33333 7 333 3 22 2 2 55 5 555 0 00 0 8 0 0 2222222 7 7 33333 9999999999999999 888888 11 11 888888 4 11 11 44 555555 0 4 9 4 11 66 0 4 222 222222222222222222 3 4 0 0 0 0 0 0 9 4 88 2 5 4 99 0 44 1111 0 555555555555555555555555555555 7 2 7 000 777 5 22 2 777777 7 7 7 7 0 0 7 5555555555555555555555555555555555 2222 7 0 7 55555555555555555555 2222 000 0 0 0000000000000 00 88 0 555555555555 0 000 7 7 7 2 7 777 2222 222 3 7 33 3
consensus : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACANTTTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-GGGTCAANA-GTTTACGAACTGTTG-ATC-GGGCAAT--T--GTCCNATT-TCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTCTTT--G-TTACGTAATGGNAAGGT----TAACT---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTACCT-A-AG---CAGAA--ACGTAAAATA-T--TTA-TT-AATT-AAGATA-TTA-AT-TTGGT-ATG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG-----T-TCG-TTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GAAAAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
Reference ( family-11865 ) : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACAATTTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-GGGTCAANA-GTTTACGAACTGTTG-ATC-GGGCAAT--T--GTCCNATT-TCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTCTTT--G-TTACGTAATGGNAAGGT----TAACT---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTACCT-A-AG---CAGAA--ACGTAAAATA-T--TTA-TT-AATT-AAGATA-TTA-AT-TTGGT-ATG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG-----T-TC--TTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GAAAAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAATN-TGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|1 : AAATTCTCAAAG---TTCAACTCTTGA-ATTCCT-TGCCTATTTCATGAAATCTGCAA---TATAGTAATGATTTTTAA-AGTTTGGAAATTGAAAGTCAACAACTTCTAAATTGTAAAAGTTTTCTGGAGTATCCTTT-CCTGCAAACTGTATCCATACAA-AATCGGATAT-TGT--TATAAAGCTTAATTTTTTCCCT-ACTTTTTTAAACAATTA-AA-----GT-------AATTTG---CCATTCAGA--AC--ACAATTTTT-TT--AA--CTGTT-AAC------TA-ACTCTCCACACTCG-TGAATACAATTTGACGGGGTCAAAA-AGTTCCGAACCGTTGAATC-AGGCAAT--TGGGTTTAATT-TCT-AT-TGGCTAGCATAGGT-TCTTTGAT-TCTTTTGGTCTGCTTCTTTGGG-TTATGTAATGG--AGGT----T-ACT---------GA-TTAAT--------TAC-AATTTAGCAGA-GATTACCT---AG---CAG-A--ACATAAAA------TTATTT-AATC-AAGATATTTG-AT-TTGGT-ATG-----TTTTAATAT--------------------TTTTCCATT-TTAAACTA-GTGTTATTT-TCG-TTGATAAA-TGTACGTAGGTAATCAGAAGACAA-CGCGTTAAGTTTC-GAAAAAAAA-A--A----AAAAACTTCCAAACGCGGATCCAGGCGCCGG--GCCAAGA-------TCA---ATTGTCTCTCGAACACAG-TCAATAACTGTA--GATATGCATA-TAGG-TAGTGATAGATA--CAAAAAAACCTTTTGGAAGAACAATT--AG
gi|10 : tttgattaatttaaaaccgcaaaatggaaaaaaattcaaatttttggaaaaactatgcagatgtatatgttaacggggcctaatccattcaattgctcatttcatgaaataagcagattttttttgcaagattcatcgaaaaaggcaagcaaaattacctgttcatgaaataggcaaaacccgctgctgatttcatgaaataggcaaacatatattgcctagtacaaatgaaataggcaaagtgtG-TCAATAACTGTAGTAACATGCATAATGGGCTGTTGCGAAATATTT---AAATCCCTTT----GAACCATTTTGGTAAACTAAACTAAACTCAATAGTGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|11 : -TCAATAACTGTA-TAACATGCATA-TGGG-CTGTGCGAAATATTT---AAATCCCTTT----GAACATTT--TGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|12 : -------AA-------CC------A--AC--A------TT-TG--AA--TTATTAAAC------CA-ATTCA-CACACTCT-TG-GTTTA--TTGAC-CGGTCAACA-GTT---G----------------------T--GCCCTATC-TCT-AT-TGGTTA-CGCAAAT-CACGTGAT-
gi|13 : tag-------AG-------CC------A--AC--A------TT-CT--AA--CT---AAAT------CA-ATGCT-CAC--TCG-TG-GTTTG--TTGAC-TGGGCAATA-GT-----GACTATT--AT------AGTC-T--GCCCTATT-TCT-AA-TGGCGA-CGCAAGT-C
gi|14 : agGT-ATG-----TT----TAA--------------------TTC----TT-TTAAACTA-GTG-----TATCCGTTGAT-AAATGTAC----GTAATC---ATACAGTCCCGTTAAAGTT
gi|16 : AATC---AGAGAGTCCCGTTAAAGTTA-AAAAAAAAA-AACC----CA----TTCCAAACGCGGATCC
gi|17 : AAC------CA-ACTCT-CACGCTCG-TG-GTCTT--TTGAG-CAGTCATTA-GTTTACGAGCTGTTA-A
gi|2 : AAATTCTTAAAAACTTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAGAGTTTTC-AGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACAATTT---AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT------TA-ACTCT-CACACTCG-TG-ATCTA--TTGAC-GGGTTCAAA-GTTTACGAACTGTTG-ATCAGGGCAAT--T--GTTTAATT-TCT-A--TGGCTA-CATAGGT-TGTTCGAT-TCTTGTGCTCTGCTTCTTT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTATCT-A-AG---CAGAA--ACATAAAATATT--TTA-TTAAATT-AAGATA-TTA-AT-TTGGTAATG-----TT----TAT--------------------TTT----TT-TTTAACTA-GTG-----T--------------TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GGGGAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA-A-AG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATC--AGTAAGCTAAACT-CACT---TT-TGTTA--GGGCTTAGCATTCGAGCTTGAC
gi|3 : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAGATTTTC-AGAGTATCC-TTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACAA-TTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT------TA-ACTCT-CACACTCG-TG-ATCTA--TTGAC-GGGTCAAAA-GTTTACGAACTGTTG-ATC-AGGCAAT--T--GTTTAATT-TCT-AT-TGGCTA-CATAGGT-TGTTCGAT-TCTT---GTCTGCTTCTTT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAA---TAATG-ATAGAATACAAA-TTAGCAGATGATTATCTAA-AG---CAGAA--ACATAAAATATT--TTA-TT-AATTAAAGATA-TTA-AT-TTGGT-ATG------T----TAT--------------------TTT----TT-TTTAACTA-GTG-----T--------------TGTAC----GTAATC---AGACAGT-CCGTTAAAGTTCGGGGAAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA-A-AG-TCAATAACTGTA-TGATATGCA-A-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAAT
gi|4 : tgtC-ATTA-AA-----GT-------AATACCATTCC------AGAACCAA------TTATT--AGTTCTGTAAAACATAACACA-ATACA-CACATACGATA-TTCTC--TTGA--GGCTCAAAAAGTATACGAACTGTTG-ATC-AGGCAAT--T--GT----TTATCTAATATGG-TA-CATAGGTATGCTTGAT-T-TCATGGTCTGCTTC-TT--G-TTATGTAATGG-AAGGT----TAAT----------GA-TT-AT--ACAAAAT------TTAGCAGATGATTACCT-ATAGTCTCAGTT--A--TAAA-------TCA-TT-TATT-AAAATG-TGA-TT-TTG------------T----TAT--------------------TCT----TTATTAAACTATGTA-----T-TCG-TTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTT-AAGTTC-GAAAAAAAACA--CCAAACA----TTCCAAACGCGGATCCA-GCGCCGGGCAAC-AGA------------CATTGT-TCTCGAACACAGTTCAATAACTGTA-TGATATGCATA-T-GG-TAGTGATAGATATTC---AAAACCTTTT----GAATAATT--c
gi|5 : CGAACTGTTG-GCT-GGGCACTAGTCAGTCCTATT-TTT-AT-TGGCTA-TGCAAGT-CACGTGAT-TCT--TGGTCTACTGCATT--GTTTACGAAATGACAAGGT----TCACTTGAAATGCAGACTT--TG-GTAG-ATGA-AA---AGCAG-------------AG---CAGAATCACGAAAAATA-GCATTA-TT-AATT-AGGATA-TTAGATATAGGT-ATGTATGATT----TATGCAGTTATAAGTATATTTAATTT----TT-ATGAACTA-GTGAA---T-ACG-TTGACAAA-TGTAC----GCTGTC---ACAATGTCCTG-TAAAGTT
gi|6 : TTA-AT-----GG-------AA-------CC------A--AC--A------TT-TTTTAA--TTGT--AA--------A-ACTCT-CACACTCG-TG-GACTA--TTGAC-TGGTCAACA-GTTTACGAACTGTTG-ACC-GGACAGA--A--GTCCGAAT-TCT-AT-TGGCTA-CGTAAGT-CACATGAT-TCTTGTTAT-TG--TTGTT--G-TTATGTAATGGCGATGT----TCACT---------GA-TTAATGCATG-------AA-TTATTTGAGGAAAAGCA-G-AG---CAAAA--ACGCAAAAAA-TA-TTG-TC-AATT-AGGATA-T
gi|7 : attT-TGT--TATGAA-CTAAAAGTTGT-ACTGATA----T--AG-ATTAGAA-----GT-------AT-------C----------------------T-TT--AA--CTGTTAAAC------CACACTCT-AACACTCGCTG-AACTA--TTGAC-GG-TCAACA-GT-------CTGTT---------------------CAAAT-TCT-AT-TGGTTA-CGCAGGT-CGCGTGAT-TCTTGTAG-CTG-----TC--G-TTACATAATGGATATGTTCTCTGATT---GATGCAc
gi|8 : tt--T--GTCCCATT--CT-AT-TGGCT--CG-ACGT-CACGTGATGTCT--TAGTCTGCTGCTAT--GTTTACGTAAT
gi|9 : tagtccTTGTAAAAGTTATC-TGAGAATCCTTTATCTG--AACT-----CACAC--TCGTTGAAAACATGCAACATACA-CATA-TTTTTT-CCT-ACATTTTT--AT-ATAA-AACTAATGTGATTAAGAA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------TA-caacaaatggccgaggtttactatttgtatgaatgaacaagagactttactttaaacgaacggagagcagaaatacgaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAAAATACTTAAAAAATGTGATGCACTCTATTTTTTTCTTATATAAATCTAATGTGAT
Alignments
lowQualScore : 333 1 222 222 33333 222 1 11 11 11 1111111 11111 2222222222222222 111111 111111 111111 222222222222222222 11 1 11 1111 333333333333333333333333333333 111 111 333333 5555555555555555555555555555555555 1111 55555555555555555555 1111 111 2222222222222 22 11 1 333333333333 1 222 111 1111 111 1
lowQualScore : 000 3 7 6 333 333 7 33333 6 333 3 44 3 3 22 2 333 8 11 8 0 8 8 7777777 6 5 44444 4444444444444444 222222 66 66 222222 4 66 66 44 111111 4 4 8 4 66 55 1 4 888 777777777777777777 2 2 4 4 4 4 3 4 2 4 22 0 2 6 66 0 22 2222 7 222222222222222222222222222222 6 7 3 999 111 3 99 2 888888 6 6 6 6 8 8 6 6666666666666666666666666666666666 4444 6 1 6 11111111111111111111 4444 000 8 8 6666666666666 55 33 0 333333333333 0 111 6 6 6 4 6 111 4444 222 7 6 3 7
lowQualScore : ... . . . ... ... . ..... . ... . .. . . .. . ... . .. . . . . ....... . . ..... ................ ...... .. .. ...... . .. .. .. ...... . . . . .. .. . . ... .................. . . . . . . . . . . .. . . . .. . .. .... . .............................. . . . ... ... . .. . ...... . . . . . . . .................................. .... . . . .................... .... ... . . ............. .. .. . ............ . ... . . . . . ... .... ... . . . .
lowQualScore : 333 3 3 7 333 333 3 33333 7 333 3 22 2 2 55 5 555 0 00 0 8 0 0 8888888 7 7 33333 9999999999999999 888888 11 11 888888 4 11 11 44 555555 0 4 9 4 11 66 0 4 222 222222222222222222 3 4 0 0 0 0 0 0 9 4 88 2 5 4 99 0 44 1111 0 555555555555555555555555555555 7 2 7 000 777 5 22 2 777777 7 7 7 7 0 0 7 5555555555555555555555555555555555 2222 7 0 7 77777777777777777777 2222 000 0 0 0000000000000 00 88 0 555555555555 0 000 7 7 7 2 7 777 2222 222 3 7 3 3
consensus : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACANTTTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-GGGTCAANA-GTTTACGAACTGTTG-ATC-GGGCAAT--T--GTCCNATT-TCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTCTTT--G-TTACGTAATGGNAAGGT----TAACT---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTACCT-A-AG---CAGAA--ACGTAAAATA-T--TTA-TT-AATT-AAGATA-TTA-AT-TTGGT-ATG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG-----T---CGTTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GAAAAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
Reference ( family-11865 ) : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACANTTTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-GGGTCAANA-GTTTACGAACTGTTG-ATC-GGGCAAT--T--GTCCNATT-TCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTCTTT--G-TTACGTAATGGNAAGGT----TAACT---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTACCT-A-AG---CAGAA--ACGTAAAATA-T--TTA-TT-AATT-AAGATA-TTA-AT-TTGGT-ATG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG-----T--TCGTTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GAAAAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|1 : AAATTCTCAAAG---TTCAACTCTTGA-ATTCCT-TGCCTATTTCATGAAATCTGCAA---TATAGTAATGATTTTTAA-AGTTTGGAAATTGAAAGTCAACAACTTCTAAATTGTAAAAGTTTTCTGGAGTATCCTTT-CCTGCAAACTGTATCCATACAA-AATCGGATAT-TGT--TATAAAGCTTAATTTTTTCCCT-ACTTTTTTAAACAATTA-AA-----GT-------AATTTG---CCATTCAGA--AC--ACAATTTTT-TT--AA--CTGTT-AAC------TA-ACTCTCCACACTCG-TGAATACAATTTGACGGGGTCAAAA-AGTTCCGAACCGTTGAATC-AGGCAAT--TGGGTTTAATT-TCT-AT-TGGCTAGCATAGGT-TCTTTGAT-TCTTTTGGTCTGCTTCTTTGGG-TTATGTAATGG--AGGT----T-ACT---------GA-TTAAT--------TAC-AATTTAGCAGA-GATTACCT---AG---CAG-A--ACATAAAA------TTATTT-AATC-AAGATATTTG-AT-TTGGT-ATG-----TTTTAATAT--------------------TTTTCCATT-TTAAACTA-GTGTTATTT--TCGTTGATAAA-TGTACGTAGGTAATCAGAAGACAA-CGCGTTAAGTTTC-GAAAAAAAA-A--A----AAAAACTTCCAAACGCGGATCCAGGCGCCGG--GCCAAGA-------TCA---ATTGTCTCTCGAACACAG-TCAATAACTGTA--GATATGCATA-TAGG-TAGTGATAGATA--CAAAAAAACCTTTTGGAAGAACAATT--AG
gi|10 : tttgattaatttaaaaccgcaaaatggaaaaaaattcaaatttttggaaaaactatgcagatgtatatgttaacggggcctaatccattcaattgctcatttcatgaaataagcagattttttttgcaagattcatcgaaaaaggcaagcaaaattacctgttcatgaaataggcaaaacccgctgctgatttcatgaaataggcaaacatatattgcctagtacaaatgaaataggcaaagtgtG-TCAATAACTGTAGTAACATGCATAATGGGCTGTTGCGAAATATTT---AAATCCCTTT----GAACCATTTTGGTAAACTAAACTAAACTCAATAGTGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|11 : -TCAATAACTGTA-TAACATGCATA-TGGG-CTGTGCGAAATATTT---AAATCCCTTT----GAACATTT--TGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|12 : -------AA-------CC------A--AC--A------TT-TG--AA--TTATTAAAC------CA-ATTCA-CACACTCT-TG-GTTTA--TTGAC-CGGTCAACA-GTT---G----------------------T--GCCCTATC-TCT-AT-TGGTTA-CGCAAAT-CACGTGAT-
gi|13 : tag-------AG-------CC------A--AC--A------TT-CT--AA--CT---AAAT------CA-ATGCT-CAC--TCG-TG-GTTTG--TTGAC-TGGGCAATA-GT-----GACTATT--AT------AGTC-T--GCCCTATT-TCT-AA-TGGCGA-CGCAAGT-C
gi|14 : agGT-ATG-----TT----TAA--------------------TTC----TT-TTAAACTA-GTG-----TATCCGTTGAT-AAATGTAC----GTAATC---ATACAGTCCCGTTAAAGTT
gi|16 : AATC---AGAGAGTCCCGTTAAAGTTA-AAAAAAAAA-AACC----CA----TTCCAAACGCGGATCC
gi|17 : AAC------CA-ACTCT-CACGCTCG-TG-GTCTT--TTGAG-CAGTCATTA-GTTTACGAGCTGTTA-A
gi|2 : AAATTCTTAAAAACTTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAGAGTTTTC-AGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACAATTT---AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT------TA-ACTCT-CACACTCG-TG-ATCTA--TTGAC-GGGTTCAAA-GTTTACGAACTGTTG-ATCAGGGCAAT--T--GTTTAATT-TCT-A--TGGCTA-CATAGGT-TGTTCGAT-TCTTGTGCTCTGCTTCTTT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTATCT-A-AG---CAGAA--ACATAAAATATT--TTA-TTAAATT-AAGATA-TTA-AT-TTGGTAATG-----TT----TAT--------------------TTT----TT-TTTAACTA-GTG-----T--------------TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GGGGAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA-A-AG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATC--AGTAAGCTAAACT-CACT---TT-TGTTA--GGGCTTAGCATTCGAGCTTGAC
gi|3 : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAGATTTTC-AGAGTATCC-TTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACAA-TTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT------TA-ACTCT-CACACTCG-TG-ATCTA--TTGAC-GGGTCAAAA-GTTTACGAACTGTTG-ATC-AGGCAAT--T--GTTTAATT-TCT-AT-TGGCTA-CATAGGT-TGTTCGAT-TCTT---GTCTGCTTCTTT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAA---TAATG-ATAGAATACAAA-TTAGCAGATGATTATCTAA-AG---CAGAA--ACATAAAATATT--TTA-TT-AATTAAAGATA-TTA-AT-TTGGT-ATG------T----TAT--------------------TTT----TT-TTTAACTA-GTG-----T--------------TGTAC----GTAATC---AGACAGT-CCGTTAAAGTTCGGGGAAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA-A-AG-TCAATAACTGTA-TGATATGCA-A-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAAT
gi|4 : tgtC-ATTA-AA-----GT-------AATACCATTCC------AGAACCAA------TTATT--AGTTCTGTAAAACATAACACA-ATACA-CACATACGATA-TTCTC--TTGA--GGCTCAAAAAGTATACGAACTGTTG-ATC-AGGCAAT--T--GT----TTATCTAATATGG-TA-CATAGGTATGCTTGAT-T-TCATGGTCTGCTTC-TT--G-TTATGTAATGG-AAGGT----TAAT----------GA-TT-AT--ACAAAAT------TTAGCAGATGATTACCT-ATAGTCTCAGTT--A--TAAA-------TCA-TT-TATT-AAAATG-TGA-TT-TTG------------T----TAT--------------------TCT----TTATTAAACTATGTA-----T--TCGTTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTT-AAGTTC-GAAAAAAAACA--CCAAACA----TTCCAAACGCGGATCCA-GCGCCGGGCAAC-AGA------------CATTGT-TCTCGAACACAGTTCAATAACTGTA-TGATATGCATA-T-GG-TAGTGATAGATATTC---AAAACCTTTT----GAATAATT--c
gi|5 : CGAACTGTTG-GCT-GGGCACTAGTCAGTCCTATT-TTT-AT-TGGCTA-TGCAAGT-CACGTGAT-TCT--TGGTCTACTGCATT--GTTTACGAAATGACAAGGT----TCACTTGAAATGCAGACTT--TG-GTAG-ATGA-AA---AGCAG-------------AG---CAGAATCACGAAAAATA-GCATTA-TT-AATT-AGGATA-TTAGATATAGGT-ATGTATGATT----TATGCAGTTATAAGTATATTTAATTT----TT-ATGAACTA-GTGAA---T--ACGTTGACAAA-TGTAC----GCTGTC---ACAATGTCCTG-TAAAGTT
gi|6 : TTA-AT-----GG-------AA-------CC------A--AC--A------TT-TTTTAA--TTGT--AA--------A-ACTCT-CACACTCG-TG-GACTA--TTGAC-TGGTCAACA-GTTTACGAACTGTTG-ACC-GGACAGA--A--GTCCGAAT-TCT-AT-TGGCTA-CGTAAGT-CACATGAT-TCTTGTTAT-TG--TTGTT--G-TTATGTAATGGCGATGT----TCACT---------GA-TTAATGCATG-------AA-TTATTTGAGGAAAAGCA-G-AG---CAAAA--ACGCAAAAAA-TA-TTG-TC-AATT-AGGATA-T
gi|7 : attT-TGT--TATGAA-CTAAAAGTTGT-ACTGATA----T--AG-ATTAGAA-----GT-------AT-------C----------------------T-TT--AA--CTGTTAAAC------CACACTCT-AACACTCGCTG-AACTA--TTGAC-GG-TCAACA-GT-------CTGTT---------------------CAAAT-TCT-AT-TGGTTA-CGCAGGT-CGCGTGAT-TCTTGTAG-CTG-----TC--G-TTACATAATGGATATGTTCTCTGATT---GATGCAc
gi|8 : tt--T--GTCCCATT--CT-AT-TGGCT--CG-ACGT-CACGTGATGTCT--TAGTCTGCTGCTAT--GTTTACGTAAT
gi|9 : tagtccTTGTAAAAGTTATC-TGAGAATCCTTTATCTG--AACT-----CACAC--TCGTTGAAAACATGCAACATACA-CATA-TTTTTT-CCT-ACATTTTT--AT-ATAA-AACTAATGTGATTAAGAA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------TA-caacaaatggccgaggtttactatttgtatgaatgaacaagagactttactttaaacgaacggagagcagaaatacgaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAAAATACTTAAAAAATGTGATGCACTCTATTTTTTTCTTATATAAATCTAATGTGAT
Alignments
lowQualScore : 333 1 222 222 33333 222 1 11 11 11 222 11111 2222222222222222 111111 111111 111111 222222222222222222 11 1 11 1111 333333333333333333333333333333 111 111 333333 5555555555555555555555555555555555 1111 666666666666666666666 1111 111 2222222222222 22 11 1 333333333333 1 222 111 1111 111 1
lowQualScore : 000 3 7 6 333 333 7 33333 6 333 3 44 66 22 2 333 8 11 8 0 8 8 8 111 6 5 44444 4444444444444444 222222 66 66 222222 4 66 66 44 111111 4 4 8 4 66 55 1 4 888 777777777777777777 2 2 4 4 4 4 3 4 2 4 22 0 2 6 66 0 22 2222 7 222222222222222222222222222222 6 7 3 999 111 3 99 2 888888 6 6 6 6 8 8 6 6666666666666666666666666666666666 4444 6 1 6 444444444444444444444 4444 000 8 8 6666666666666 55 33 0 333333333333 0 111 6 6 6 4 6 111 4444 222 7 6 3 7
lowQualScore : ... . . . ... ... . ..... . ... . .. .. .. . ... . .. . . . . . ... . . ..... ................ ...... .. .. ...... . .. .. .. ...... . . . . .. .. . . ... .................. . . . . . . . . . . .. . . . .. . .. .... . .............................. . . . ... ... . .. . ...... . . . . . . . .................................. .... . . . ..................... .... ... . . ............. .. .. . ............ . ... . . . . . ... .... ... . . . .
lowQualScore : 333 3 3 7 333 333 3 33333 7 333 3 22 55 55 5 555 0 00 0 8 0 0 8 666 7 7 33333 9999999999999999 888888 11 11 888888 4 11 11 44 555555 0 4 9 4 11 66 0 4 222 222222222222222222 3 4 0 0 0 0 0 0 9 4 88 2 5 4 99 0 44 1111 0 555555555555555555555555555555 7 2 7 000 777 5 22 2 777777 7 7 7 7 0 0 7 5555555555555555555555555555555555 2222 7 0 7 222222222222222222222 2222 000 0 0 0000000000000 00 88 0 555555555555 0 000 7 7 7 2 7 777 2222 222 3 7 3 3
consensus : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACANTTTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-GGGTCAANA-GTTTACGAACTGTTG-ATC-GGGCAAT--T--GTCCNATT-TCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTCTTT--G-TTACGTAATGGNAAGGT----TAACT---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTACCT-A-AG---CAGAA--ACGTAAAATA-T--TTA-TT-AATT-AAGATA-TTA-AT-TTGGT-ATG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG------T---CGTTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GAAAAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
Reference ( family-11865 ) : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACANTTTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-GGGTCAANA-GTTTACGAACTGTTG-ATC-GGGCAAT--T--GTCCNATT-TCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTCTTT--G-TTACGTAATGGNAAGGT----TAACT---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTACCT-A-AG---CAGAA--ACGTAAAATA-T--TTA-TT-AATT-AAGATA-TTA-AT-TTGGT-ATG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG------T---CGTTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GAAAAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|1 : AAATTCTCAAAG---TTCAACTCTTGA-ATTCCT-TGCCTATTTCATGAAATCTGCAA---TATAGTAATGATTTTTAA-AGTTTGGAAATTGAAAGTCAACAACTTCTAAATTGTAAAAGTTTTCTGGAGTATCCTTT-CCTGCAAACTGTATCCATACAA-AATCGGATAT-TGT--TATAAAGCTTAATTTTTTCCCT-ACTTTTTTAAACAATTA-AA-----GT-------AATTTG---CCATTCAGA--AC--ACAATTTTT-TT--AA--CTGTT-AAC------TA-ACTCTCCACACTCG-TGAATACAATTTGACGGGGTCAAAA-AGTTCCGAACCGTTGAATC-AGGCAAT--TGGGTTTAATT-TCT-AT-TGGCTAGCATAGGT-TCTTTGAT-TCTTTTGGTCTGCTTCTTTGGG-TTATGTAATGG--AGGT----T-ACT---------GA-TTAAT--------TAC-AATTTAGCAGA-GATTACCT---AG---CAG-A--ACATAAAA------TTATTT-AATC-AAGATATTTG-AT-TTGGT-ATG-----TTTTAATAT--------------------TTTTCCATT-TTAAACTA-GTGTTATTTT---CGTTGATAAA-TGTACGTAGGTAATCAGAAGACAA-CGCGTTAAGTTTC-GAAAAAAAA-A--A----AAAAACTTCCAAACGCGGATCCAGGCGCCGG--GCCAAGA-------TCA---ATTGTCTCTCGAACACAG-TCAATAACTGTA--GATATGCATA-TAGG-TAGTGATAGATA--CAAAAAAACCTTTTGGAAGAACAATT--AG
gi|10 : tttgattaatttaaaaccgcaaaatggaaaaaaattcaaatttttggaaaaactatgcagatgtatatgttaacggggcctaatccattcaattgctcatttcatgaaataagcagattttttttgcaagattcatcgaaaaaggcaagcaaaattacctgttcatgaaataggcaaaacccgctgctgatttcatgaaataggcaaacatatattgcctagtacaaatgaaataggcaaagtgtG-TCAATAACTGTAGTAACATGCATAATGGGCTGTTGCGAAATATTT---AAATCCCTTT----GAACCATTTTGGTAAACTAAACTAAACTCAATAGTGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|11 : -TCAATAACTGTA-TAACATGCATA-TGGG-CTGTGCGAAATATTT---AAATCCCTTT----GAACATTT--TGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|12 : -------AA-------CC------A--AC--A------TT-TG--AA--TTATTAAAC------CA-ATTCA-CACACTCT-TG-GTTTA--TTGAC-CGGTCAACA-GTT---G----------------------T--GCCCTATC-TCT-AT-TGGTTA-CGCAAAT-CACGTGAT-
gi|13 : tag-------AG-------CC------A--AC--A------TT-CT--AA--CT---AAAT------CA-ATGCT-CAC--TCG-TG-GTTTG--TTGAC-TGGGCAATA-GT-----GACTATT--AT------AGTC-T--GCCCTATT-TCT-AA-TGGCGA-CGCAAGT-C
gi|14 : agGT-ATG-----TT----TAA--------------------TTC----TT-TTAAACTA-GTG------TATCCGTTGAT-AAATGTAC----GTAATC---ATACAGTCCCGTTAAAGTT
gi|16 : AATC---AGAGAGTCCCGTTAAAGTTA-AAAAAAAAA-AACC----CA----TTCCAAACGCGGATCC
gi|17 : AAC------CA-ACTCT-CACGCTCG-TG-GTCTT--TTGAG-CAGTCATTA-GTTTACGAGCTGTTA-A
gi|2 : AAATTCTTAAAAACTTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAGAGTTTTC-AGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACAATTT---AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT------TA-ACTCT-CACACTCG-TG-ATCTA--TTGAC-GGGTTCAAA-GTTTACGAACTGTTG-ATCAGGGCAAT--T--GTTTAATT-TCT-A--TGGCTA-CATAGGT-TGTTCGAT-TCTTGTGCTCTGCTTCTTT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTATCT-A-AG---CAGAA--ACATAAAATATT--TTA-TTAAATT-AAGATA-TTA-AT-TTGGTAATG-----TT----TAT--------------------TTT----TT-TTTAACTA-GTG------T--------------TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GGGGAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA-A-AG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATC--AGTAAGCTAAACT-CACT---TT-TGTTA--GGGCTTAGCATTCGAGCTTGAC
gi|3 : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAGATTTTC-AGAGTATCCTT-ACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACAATTT---AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT------TA-ACTCT-CACACTCG-TG-ATCTA--TTGAC-GGGTCAAAA-GTTTACGAACTGTTG-ATC-AGGCAAT--T--GTTTAATT-TCT-AT-TGGCTA-CATAGGT-TGTTCGAT-TCTT---GTCTGCTTCTTT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAA---TAATG-ATAGAATACAAA-TTAGCAGATGATTATCTAA-AG---CAGAA--ACATAAAATATT--TTA-TT-AATTAAAGATA-TTA-AT-TTGGT-ATG------T----TAT--------------------TTT----TT-TTTAACTA-GTG------T--------------TGTAC----GTAATC---AGACAGT-CCGTTAAAGTTCGGGGAAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA-A-AG-TCAATAACTGTA-TGATATGCA-A-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAAT
gi|4 : tgtC-ATTA-AA-----GT-------AATACCATTCC------AGAACCAA------TTATT--AGTTCTGTAAAACATAACACA-ATACA-CACATACGATA-TTCTC--TTGA--GGCTCAAAAAGTATACGAACTGTTG-ATC-AGGCAAT--T--GT----TTATCTAATATGG-TA-CATAGGTATGCTTGAT-T-TCATGGTCTGCTTC-TT--G-TTATGTAATGG-AAGGT----TAAT----------GA-TT-AT--ACAAAAT------TTAGCAGATGATTACCT-ATAGTCTCAGTT--A--TAAA-------TCA-TT-TATT-AAAATG-TGA-TT-TTG------------T----TAT--------------------TCT----TTATTAAACTATGTAT-----T---CGTTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTT-AAGTTC-GAAAAAAAACA--CCAAACA----TTCCAAACGCGGATCCA-GCGCCGGGCAAC-AGA------------CATTGT-TCTCGAACACAGTTCAATAACTGTA-TGATATGCATA-T-GG-TAGTGATAGATATTC---AAAACCTTTT----GAATAATT--c
gi|5 : CGAACTGTTG-GCT-GGGCACTAGTCAGTCCTATT-TTT-AT-TGGCTA-TGCAAGT-CACGTGAT-TCT--TGGTCTACTGCATT--GTTTACGAAATGACAAGGT----TCACTTGAAATGCAGACTT--TG-GTAG-ATGA-AA---AGCAG-------------AG---CAGAATCACGAAAAATA-GCATTA-TT-AATT-AGGATA-TTAGATATAGGT-ATGTATGATT----TATGCAGTTATAAGTATATTTAATTT----TT-ATGAACTA-GTGAA----TA--CGTTGACAAA-TGTAC----GCTGTC---ACAATGTCCTG-TAAAGTT
gi|6 : TTA-AT-----GG-------AA-------CC------A--AC--A------TT-TTTTAA--TTGT--AA--------A-ACTCT-CACACTCG-TG-GACTA--TTGAC-TGGTCAACA-GTTTACGAACTGTTG-ACC-GGACAGA--A--GTCCGAAT-TCT-AT-TGGCTA-CGTAAGT-CACATGAT-TCTTGTTAT-TG--TTGTT--G-TTATGTAATGGCGATGT----TCACT---------GA-TTAATGCATG-------AA-TTATTTGAGGAAAAGCA-G-AG---CAAAA--ACGCAAAAAA-TA-TTG-TC-AATT-AGGATA-T
gi|7 : attT-TGT--TATGAA-CTAAAAGTTGT-ACTGATA----T--AG-ATTAGAA-----GT-------AT-------C----------------------T-TT--AA--CTGTTAAAC------CACACTCT-AACACTCGCTG-AACTA--TTGAC-GG-TCAACA-GT-------CTGTT---------------------CAAAT-TCT-AT-TGGTTA-CGCAGGT-CGCGTGAT-TCTTGTAG-CTG-----TC--G-TTACATAATGGATATGTTCTCTGATT---GATGCAc
gi|8 : tt--T--GTCCCATT--CT-AT-TGGCT--CG-ACGT-CACGTGATGTCT--TAGTCTGCTGCTAT--GTTTACGTAAT
gi|9 : tagtccTTGTAAAAGTTATC-TGAGAATCCTTTATCTG--AACT-----CACAC--TCGTTGAAAACATGCAACATACA-CATA-TTTTTT-CCT-ACATTTTT--AT-ATAA-AACTAATGTGATTAAGAA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------TA-caacaaatggccgaggtttactatttgtatgaatgaacaagagactttactttaaacgaacggagagcagaaatacgaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAAAATACTTAAAAAATGTGATGCACTCTATTTTTTTCTTATATAAATCTAATGTGAT
Alignments
lowQualScore : 333 1 222 222 33333 222 1 11 11 11 222 11111 2222222222222222 111111 111111 111111 222222222222222222 11 1 11 1111 333333333333333333333333333333 111 111 333333 5555555555555555555555555555555555 1111 666666666666666666666 1111 111 2222222222222 22 11 1 333333333333 1 222 111 1111 111 1
lowQualScore : 000 3 7 6 333 333 7 33333 6 333 3 44 66 22 2 333 8 11 8 0 8 8 8 111 6 5 44444 4444444444444444 222222 66 66 222222 4 66 66 44 111111 4 4 8 4 66 55 1 4 888 777777777777777777 2 2 4 4 4 4 3 4 2 4 22 0 2 6 66 0 22 2222 7 222222222222222222222222222222 6 7 3 999 111 3 99 2 888888 6 6 6 6 8 8 6 6666666666666666666666666666666666 4444 6 1 6 444444444444444444444 4444 000 8 8 6666666666666 55 33 0 333333333333 0 111 6 6 6 4 6 111 4444 222 7 6 3 7
lowQualScore : ... . . . ... ... . ..... . ... . .. .. .. . ... . .. . . . . . ... . . ..... ................ ...... .. .. ...... . .. .. .. ...... . . . . .. .. . . ... .................. . . . . . . . . . . .. . . . .. . .. .... . .............................. . . . ... ... . .. . ...... . . . . . . . .................................. .... . . . ..................... .... ... . . ............. .. .. . ............ . ... . . . . . ... .... ... . . . .
lowQualScore : 333 3 3 7 333 333 3 33333 7 333 3 22 55 55 5 555 0 00 0 8 0 0 8 666 7 7 33333 9999999999999999 888888 11 11 888888 4 11 11 44 555555 0 4 9 4 11 66 0 4 222 222222222222222222 3 4 0 0 0 0 0 0 9 4 88 2 5 4 99 0 44 1111 0 555555555555555555555555555555 7 2 7 000 777 5 22 2 777777 7 7 7 7 0 0 7 5555555555555555555555555555555555 2222 7 0 7 222222222222222222222 2222 000 0 0 0000000000000 00 88 0 555555555555 0 000 7 7 7 2 7 777 2222 222 3 7 3 3
consensus : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACANTTTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-GGGTCAANA-GTTTACGAACTGTTG-ATC-GGGCAAT--T--GTCCNATT-TCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTCTTT--G-TTACGTAATGGNAAGGT----TAACT---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTACCT-A-AG---CAGAA--ACGTAAAATA-T--TTA-TT-AATT-AAGATA-TTA-AT-TTGGT-ATG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG------T---CGTTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GAAAAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
Reference ( family-11865 ) : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACANTTTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-GGGTCAANA-GTTTACGAACTGTTG-ATC-GGGCAAT--T--GTCCNATT-TCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTCTTT--G-TTACGTAATGGNAAGGT----TAACT---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTACCT-A-AG---CAGAA--ACGTAAAATA-T--TTA-TT-AATT-AAGATA-TTA-AT-TTGGT-ATG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG------T---CGTTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GAAAAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|1 : AAATTCTCAAAG---TTCAACTCTTGA-ATTCCT-TGCCTATTTCATGAAATCTGCAA---TATAGTAATGATTTTTAA-AGTTTGGAAATTGAAAGTCAACAACTTCTAAATTGTAAAAGTTTTCTGGAGTATCCTTT-CCTGCAAACTGTATCCATACAA-AATCGGATAT-TGT--TATAAAGCTTAATTTTTTCCCT-ACTTTTTTAAACAATTA-AA-----GT-------AATTTG---CCATTCAGA--AC--ACAATTTTT-TT--AA--CTGTT-AAC------TA-ACTCTCCACACTCG-TGAATACAATTTGACGGGGTCAAAA-AGTTCCGAACCGTTGAATC-AGGCAAT--TGGGTTTAATT-TCT-AT-TGGCTAGCATAGGT-TCTTTGAT-TCTTTTGGTCTGCTTCTTTGGG-TTATGTAATGG--AGGT----T-ACT---------GA-TTAAT--------TAC-AATTTAGCAGA-GATTACCT---AG---CAG-A--ACATAAAA------TTATTT-AATC-AAGATATTTG-AT-TTGGT-ATG-----TTTTAATAT--------------------TTTTCCATT-TTAAACTA-GTGTTATTTT---CGTTGATAAA-TGTACGTAGGTAATCAGAAGACAA-CGCGTTAAGTTTC-GAAAAAAAA-A--A----AAAAACTTCCAAACGCGGATCCAGGCGCCGG--GCCAAGA-------TCA---ATTGTCTCTCGAACACAG-TCAATAACTGTA--GATATGCATA-TAGG-TAGTGATAGATA--CAAAAAAACCTTTTGGAAGAACAATT--AG
gi|10 : tttgattaatttaaaaccgcaaaatggaaaaaaattcaaatttttggaaaaactatgcagatgtatatgttaacggggcctaatccattcaattgctcatttcatgaaataagcagattttttttgcaagattcatcgaaaaaggcaagcaaaattacctgttcatgaaataggcaaaacccgctgctgatttcatgaaataggcaaacatatattgcctagtacaaatgaaataggcaaagtgtG-TCAATAACTGTAGTAACATGCATAATGGGCTGTTGCGAAATATTT---AAATCCCTTT----GAACCATTTTGGTAAACTAAACTAAACTCAATAGTGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|11 : -TCAATAACTGTA-TAACATGCATA-TGGG-CTGTGCGAAATATTT---AAATCCCTTT----GAACATTT--TGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|12 : -------AA-------CC------A--AC--A------TT-TG--AA--TTATTAAAC------CA-ATTCA-CACACTCT-TG-GTTTA--TTGAC-CGGTCAACA-GTT---G----------------------T--GCCCTATC-TCT-AT-TGGTTA-CGCAAAT-CACGTGAT-
gi|13 : tag-------AG-------CC------A--AC--A------TT-CT--AA--CT---AAAT------CA-ATGCT-CAC--TCG-TG-GTTTG--TTGAC-TGGGCAATA-GT-----GACTATT--AT------AGTC-T--GCCCTATT-TCT-AA-TGGCGA-CGCAAGT-C
gi|14 : agGT-ATG-----TT----TAA--------------------TTC----TT-TTAAACTA-GTG------TATCCGTTGAT-AAATGTAC----GTAATC---ATACAGTCCCGTTAAAGTT
gi|16 : AATC---AGAGAGTCCCGTTAAAGTTA-AAAAAAAAA-AACC----CA----TTCCAAACGCGGATCC
gi|17 : AAC------CA-ACTCT-CACGCTCG-TG-GTCTT--TTGAG-CAGTCATTA-GTTTACGAGCTGTTA-A
gi|2 : AAATTCTTAAAAACTTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAGAGTTTTC-AGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACAATTT---AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT------TA-ACTCT-CACACTCG-TG-ATCTA--TTGAC-GGGTTCAAA-GTTTACGAACTGTTG-ATCAGGGCAAT--T--GTTTAATT-TCT-A--TGGCTA-CATAGGT-TGTTCGAT-TCTTGTGCTCTGCTTCTTT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTATCT-A-AG---CAGAA--ACATAAAATATT--TTA-TTAAATT-AAGATA-TTA-AT-TTGGTAATG-----TT----TAT--------------------TTT----TT-TTTAACTA-GTG------T--------------TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GGGGAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA-A-AG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATC--AGTAAGCTAAACT-CACT---TT-TGTTA--GGGCTTAGCATTCGAGCTTGAC
gi|3 : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAGATTTTC-AGAGTATCCTT-ACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACAATTT---AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT------TA-ACTCT-CACACTCG-TG-ATCTA--TTGAC-GGGTCAAAA-GTTTACGAACTGTTG-ATC-AGGCAAT--T--GTTTAATT-TCT-AT-TGGCTA-CATAGGT-TGTTCGAT-TCTT---GTCTGCTTCTTT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAA---TAATG-ATAGAATACAAA-TTAGCAGATGATTATCTAA-AG---CAGAA--ACATAAAATATT--TTA-TT-AATTAAAGATA-TTA-AT-TTGGT-ATG------T----TAT--------------------TTT----TT-TTTAACTA-GTG------T--------------TGTAC----GTAATC---AGACAGT-CCGTTAAAGTTCGGGGAAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA-A-AG-TCAATAACTGTA-TGATATGCA-A-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAAT
gi|4 : tgtC-ATTA-AA-----GT-------AATACCATTCC------AGAACCAA------TTATT--AGTTCTGTAAAACATAACACA-ATACA-CACATACGATA-TTCTC--TTGA--GGCTCAAAAAGTATACGAACTGTTG-ATC-AGGCAAT--T--GT----TTATCTAATATGG-TA-CATAGGTATGCTTGAT-T-TCATGGTCTGCTTC-TT--G-TTATGTAATGG-AAGGT----TAAT----------GA-TT-AT--ACAAAAT------TTAGCAGATGATTACCT-ATAGTCTCAGTT--A--TAAA-------TCA-TT-TATT-AAAATG-TGA-TT-TTG------------T----TAT--------------------TCT----TTATTAAACTATGTAT-----T---CGTTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTT-AAGTTC-GAAAAAAAACA--CCAAACA----TTCCAAACGCGGATCCA-GCGCCGGGCAAC-AGA------------CATTGT-TCTCGAACACAGTTCAATAACTGTA-TGATATGCATA-T-GG-TAGTGATAGATATTC---AAAACCTTTT----GAATAATT--c
gi|5 : CGAACTGTTG-GCT-GGGCACTAGTCAGTCCTATT-TTT-AT-TGGCTA-TGCAAGT-CACGTGAT-TCT--TGGTCTACTGCATT--GTTTACGAAATGACAAGGT----TCACTTGAAATGCAGACTT--TG-GTAG-ATGA-AA---AGCAG-------------AG---CAGAATCACGAAAAATA-GCATTA-TT-AATT-AGGATA-TTAGATATAGGT-ATGTATGATT----TATGCAGTTATAAGTATATTTAATTT----TT-ATGAACTA-GTGAA----TA--CGTTGACAAA-TGTAC----GCTGTC---ACAATGTCCTG-TAAAGTT
gi|6 : TTA-AT-----GG-------AA-------CC------A--AC--A------TT-TTTTAA--TTGT--AA--------A-ACTCT-CACACTCG-TG-GACTA--TTGAC-TGGTCAACA-GTTTACGAACTGTTG-ACC-GGACAGA--A--GTCCGAAT-TCT-AT-TGGCTA-CGTAAGT-CACATGAT-TCTTGTTAT-TG--TTGTT--G-TTATGTAATGGCGATGT----TCACT---------GA-TTAATGCATG-------AA-TTATTTGAGGAAAAGCA-G-AG---CAAAA--ACGCAAAAAA-TA-TTG-TC-AATT-AGGATA-T
gi|7 : attT-TGT--TATGAA-CTAAAAGTTGT-ACTGATA----T--AG-ATTAGAA-----GT-------AT-------C----------------------T-TT--AA--CTGTTAAAC------CACACTCT-AACACTCGCTG-AACTA--TTGAC-GG-TCAACA-GT-------CTGTT---------------------CAAAT-TCT-AT-TGGTTA-CGCAGGT-CGCGTGAT-TCTTGTAG-CTG-----TC--G-TTACATAATGGATATGTTCTCTGATT---GATGCAc
gi|8 : tt--T--GTCCCATT--CT-AT-TGGCT--CG-ACGT-CACGTGATGTCT--TAGTCTGCTGCTAT--GTTTACGTAAT
gi|9 : tagtccTTGTAAAAGTTATC-TGAGAATCCTTTATCTG--AACT-----CACAC--TCGTTGAAAACATGCAACATACA-CATA-TTTTTT-CCT-ACATTTTT--AT-ATAA-AACTAATGTGATTAAGAA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------TA-caacaaatggccgaggtttactatttgtatgaatgaacaagagactttactttaaacgaacggagagcagaaatacgaaa
blockSeqs : ACT . T C . . A . C . . A TA C G AAT A AA . . G A T . G CTAAT AATACCATT . GA CA . A TT TT TA ATAACA C . A . . C C A TTA GGCTGGGCACTAGTCA C T A A A . C A G G TG C T . T GA TCTC A TTGAAATGCAGACTTTGGTAGATGA . T T AA TCT A TC A TAGCA . A A . G A A TATGATTTATGCAGTTATAAGTATATTTAA . A A T TATCCGTTGATAAA . . G C CCAAACA G GC . TCTGTCCTCAGT . CAC T G A G C . . TTG A C . T
blockSeqs : C . T C . . A . C . . A TA C G AAT . . . . . A T . . . GATTAAGAA . . . . . . . TG . . . C . . T T . TTA GATCAGGGCAATT C T . . . . C . T . CA C T . T GA . A CGATGCAGATTAATGATAGAATAC . T T AT . A . A TATT . . . . . . . TTTAA . . T . AATACGTTGACAAA . . . . ACCCA . . . TCTGTCCTCAGT . A . . . G . . . T . . . .
blockSeqs : T A . . T . . . . . T . . . . AA . . . . . . . TG . . . . . . C T . TTA GATCAGGCAATT T A . . . . T . T . TG C A . . CA . A CGATGCAATAATGATAGAATACA . T C A . T . G TATT . . . . . . . TTTAT . . T . TTCGTTGATAA . . . . CCA . . . . . A . . . A . . . A
blockSeqs : . . . . . . . . . . AG . . . . . . . AA . . . . . . G A . ATA GATCAGGCAATT T A . . . . T . T . TG C G . . CG . C GATTATACAAAAT . G G G . A . G AATA . . . . . . . TTAT . . A . T . . . . CCA . . . A . . .
blockSeqs : . . . AA . . . . . . . TA . . . . . . G A . TTA GACCGGACAGAA C T . . . . T . G . T C T . . AT . C TGATTAATGCATG . . . . . A . . . . . . . . TTAT . . G . T . . . . . . . . .
blockSeqs : . . AA . . . . . . . TA . . . . . . G A . T ATAGTCT C G . . . . C . A . . . . . . A . G .
blockSeqs : AA . . . . . . . A . . . . . . T C . . T C A . . . . T . G . . . . . .
blockSeqs : AT . . . . . . . . . . . . . . G C . . . . C . . . . C . G .
blockSeqs : . . . . . . . . . .
blockSeqCons : *** AA************** ****** ****** TA ** N* GATCGGGCATT******* ** NA CGATGCAGACTAATGATAGAATAN****** A** TATT** TTTAT***************************** **** TCGTTGACAA*********** **** *** CCA********** *** ****
originalCons : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACANTTTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-GGGTCAANA-GTTTACGAACTGTTG-ATC-GGGCAAT--T--GTCCNATT-TCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTCTTT--G-TTACGTAATGGNAAGGT----TAACT---GATGCAGA-TTAATG-ATAGAATAC-AA-TTAGCAGATGATTACCT-A-AG---CAGAA--ACGTAAAATA-T--TTA-TT-AATT-AAGATA-TTA-AT-TTGGT-ATG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG------T---CGTTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GAAAAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
finalCons : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCT-ACANTTT---AC-ATTA-AA-----GTAA--------------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGACN-GGTCAANA-GTTTACGAACTGTTGATCGGGCATT-------GTCCNATT-TCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTCTTT--G-TTACGTAATGGNAAGGT----TAACCGATGCAGACTAATGATAGAATAN------AA-TTAGCAGATGATTACCTA--AG---CAGAA--ACGTAAAATATT--TTA-TT-AATT-AAGATA-TTA-AT-TTGGT-ATGTTTAT-----------------------------TTT----TT-TTNAACTA-GTGTCGTTGACAA-----------TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GAAAAAAAA-ACCA----------TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAAAATACTTAAAAAATGTGATGCACTCTATTTTTTTCTTATATAAATCTAATGTGAT
Alignments
lowQualScore : 333 1 222 222 33333 222 1 11 11 11 222 11111 2222222222222222 111111 111111 111111 44444444444444444444 11 1 11 111111111111 333333 2222222 111 111 22222 5555555555555555555555555555555555 1111 666666666666666666666 1111 111 2222222222222 22 11 1 333333333333 1 222 111 1111 111 1
lowQualScore : 000 3 7 6 333 333 7 33333 6 333 3 44 66 22 2 333 8 11 8 0 8 22 222 6 5 44444 4444444444444444 222222 66 66 222222 4 66 66 44 111111 4 4 8 4 66 99 1 4 888 44444444444444444444 2 2 4 4 4 4 3 4 2 4 22 0 2 6 66 0 22 333333333333 555555 1 99 3333333 7 3 999 111 3 99 2 22222 6 6 6 6 8 8 6 6666666666666666666666666666666666 4444 6 1 6 999999999999999999999 4444 000 8 8 6666666666666 55 33 0 333333333333 0 111 6 6 6 4 6 111 4444 222 7 6 3 7
lowQualScore : ... . . . ... ... . ..... . ... . .. .. .. . ... . .. . . . .. ... . . ..... ................ ...... .. .. ...... . .. .. .. ...... . . . . .. .. . . ... .................... . . . . . . . . . . .. . . . .. . .. ............ ...... . .. ....... . . ... ... . .. . ..... . . . . . . . .................................. .... . . . ..................... .... ... . . ............. .. .. . ............ . ... . . . . . ... .... ... . . . .
lowQualScore : 333 3 3 7 333 333 3 33333 7 333 3 22 55 55 5 555 0 00 0 8 0 00 000 7 7 33333 9999999999999999 888888 11 11 888888 4 11 11 44 555555 0 4 9 4 11 88 0 4 222 77777777777777777777 3 4 0 0 0 0 0 0 9 4 88 2 5 4 99 0 44 333333333333 555555 7 22 5555555 2 7 000 777 5 22 2 00000 7 7 7 7 0 0 7 5555555555555555555555555555555555 2222 7 0 7 000000000000000000000 2222 000 0 0 0000000000000 00 88 0 555555555555 0 000 7 7 7 2 7 777 2222 222 3 7 3 3
consensus : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCTACAATTTT--AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-NGGTCAANA-GTTTACGAACTGTTG-ATC-GGGCAAT-T-----GTCCNATT-TCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTCTTT--G-TTACGTAATGGNAAGGT----TAACC---GATGCAG--TAATG-ATAGAATA-AAATTAGCAGATGATTACCT-A-AG---CAGAA--ACGTAAAATAT--TTA-TT-AATT-AAGATA-TTA-AT-TTGGT-ATG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG------T---CGTTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GAAAAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
Reference ( family-11865 ) : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAAGTTTTC-GGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCTACANTTT---AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------CA-ACTCT-CACACTCG-TG-GTCTA--TTGAC-NGGTCAANA-GTTTACGAACTGTTG-ATC-GGGC-AT-T-----GTCCNATT-TCT-AT-TGGCTA-CGCAGGT-CGCGTGAT-TCTTGTGGTCTGCTTCTTT--G-TTACGTAATGGNAAGGT----TAACC---GATGCAGACTAATG-ATAGAATA-NAATTAGCAGATGATTACCT-A-AG---CAGAA--ACGTAAAATATT-TTA-TT-AATT-AAGATA-TTA-AT-TTGGT-ATG-----TT----TAT--------------------TTT----TT-TTNAACTA-GTG------T---CGTTGAC-AA-TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GAAAAAAAA-A--C----CA----TTCCAAACGCGGATCCA-GCGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAACACAG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATT--AGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|1 : AAATTCTCAAAG---TTCAACTCTTGA-ATTCCT-TGCCTATTTCATGAAATCTGCAA---TATAGTAATGATTTTTAA-AGTTTGGAAATTGAAAGTCAACAACTTCTAAATTGTAAAAGTTTTCTGGAGTATCCTTT-CCTGCAAACTGTATCCATACAA-AATCGGATAT-TGT--TATAAAGCTTAATTTTTTCCCTACTTTTTTAAACAATTA-AA-----GT-------AATTTG---CCATTCAGA--AC--ACAATTTTT-TT--AA--CTGTT-AAC------TA-ACTCTCCACACTCG-TGAATACAATTTGACGGGGTCAAAA-AGTTCCGAACCGTTGAATC-AGGCAAT-TGG---GTTTAATT-TCT-AT-TGGCTAGCATAGGT-TCTTTGAT-TCTTTTGGTCTGCTTCTTTGGG-TTATGTAATGG--AGGT----T-ACT---GAT------TAAT---TACAAT-----TTAGCAGA-GATTACCT---AG---CAG-A--ACATAAAA-----TTATTT-AATC-AAGATATTTG-AT-TTGGT-ATG-----TTTTAATAT--------------------TTTTCCATT-TTAAACTA-GTGTTATTTT---CGTTGATAAA-TGTACGTAGGTAATCAGAAGACAA-CGCGTTAAGTTTC-GAAAAAAAA-A--A----AAAAACTTCCAAACGCGGATCCAGGCGCCGG--GCCAAGA-------TCA---ATTGTCTCTCGAACACAG-TCAATAACTGTA--GATATGCATA-TAGG-TAGTGATAGATA--CAAAAAAACCTTTTGGAAGAACAATT--AG
gi|10 : tttgattaatttaaaaccgcaaaatggaaaaaaattcaaatttttggaaaaactatgcagatgtatatgttaacggggcctaatccattcaattgctcatttcatgaaataagcagattttttttgcaagattcatcgaaaaaggcaagcaaaattacctgttcatgaaataggcaaaacccgctgctgatttcatgaaataggcaaacatatattgcctagtacaaatgaaataggcaaagtgtG-TCAATAACTGTAGTAACATGCATAATGGGCTGTTGCGAAATATTT---AAATCCCTTT----GAACCATTTTGGTAAACTAAACTAAACTCAATAGTGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|11 : -TCAATAACTGTA-TAACATGCATA-TGGG-CTGTGCGAAATATTT---AAATCCCTTT----GAACATTT--TGTAAACTAAACTAAACTCAATA-TGTTCTTGGGCTTAGCACCCGAGCATGAC
gi|12 : -------AA-------CC------A--AC--A------TT-TG--AA--TTATTAAAC------CA-ATTCA-CACACTCT-TG-GTTTA--TTGAC-CGGTCAACA-GTT---G---------------------T-----GCCCTATC-TCT-AT-TGGTTA-CGCAAAT-CACGTGAT-
gi|13 : tag-------AG-------CC------A--AC--A------TT-CT--AA--CT---AAAT------CA-ATGCT-CAC--TCG-TG-GTTTG--TTGAC-TGGGCAATA-GT-----GACTATT--AT--AGTC----T-----GCCCTATT-TCT-AA-TGGCGA-CGCAAGT-C
gi|14 : agGT-ATG-----TT----TAA--------------------TTC----TT-TTAAACTA-GTG------TATCCGTTGAT-AAATGTAC----GTAATC---ATACAGTCCCGTTAAAGTT
gi|16 : AATC---AGAGAGTCCCGTTAAAGTTA-AAAAAAAAA-AACC----CA----TTCCAAACGCGGATCC
gi|17 : AAC------CA-ACTCT-CACGCTCG-TG-GTCTT--TTGAG-CAGTCATTA-GTTTACGAGCTGTTA-A
gi|2 : AAATTCTTAAAAACTTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAGAGTTTTC-AGAGTATCCTTTACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCTACAATTT---AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT------TA-ACTCT-CACACTCG-TG-ATCTA--TTGAC-GGGTTCAAA-GTTTACGAACTGTTG-ATCAGGGCAAT-T-----GTTTAATT-TCT-A--TGGCTA-CATAGGT-TGTTCGAT-TCTTGTGCTCTGCTTCTTT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAGATTAATG-ATAGAATA-CAATTAGCAGATGATTATCT-A-AG---CAGAA--ACATAAAATATT-TTA-TTAAATT-AAGATA-TTA-AT-TTGGTAATG-----TT----TAT--------------------TTT----TT-TTTAACTA-GTG------T--------------TGTAC----GTAATC---AGACAGTCCCGTTAAAGTTC-GGGGAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA-A-AG-TCAATAACTGTA-TGATATGCATA-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAATC--AGTAAGCTAAACT-CACT---TT-TGTTA--GGGCTTAGCATTCGAGCTTGAC
gi|3 : AAATTCTTAAAA--CTTCTGCTCT-GATATTCTTCTGTCCA---CAAGGA---TACAGAGTCATGGTGAAGA-----AACAGTCTG---ATTGAAAGTCAACAACTT-TAAATTGTAAAGATTTTC-AGAGTATCCTT-ACCTGC-AACTGTATCCACACAATAATCGAATAT-TGT--TATAAA-CTTAATTTTTT-CCTACAATTT---AC-ATTA-AA-----GT-------AA-------CC------A--AC--A------TT-TT--AA--CTGTTGAAT------TA-ACTCT-CACACTCG-TG-ATCTA--TTGAC-GGGTCAAAA-GTTTACGAACTGTTG-ATC-AGGCAAT-T-----GTTTAATT-TCT-AT-TGGCTA-CATAGGT-TGTTCGAT-TCTT---GTCTGCTTCTTT--G-TTATGTAATGGGAAGGT----TAACC---GATGCAA--TAATG-ATAGAATACAAATTAGCAGATGATTATCTAA-AG---CAGAA--ACATAAAATATT-TTA-TT-AATTAAAGATA-TTA-AT-TTGGT-ATG------T----TAT--------------------TTT----TT-TTTAACTA-GTG------T--------------TGTAC----GTAATC---AGACAGT-CCGTTAAAGTTCGGGGAAAAAA-A--C----CA----TTCCAAAGGCGGATCCA--CGCCGG--AAC-AGATCTGTCCTCAGTCATTGT-TCTCGAA-A-AG-TCAATAACTGTA-TGATATGCA-A-TAGG-TAGTGATAGATATTC---AAAACCTTTT----GAACAAT
gi|4 : tgtC-ATTA-AA-----GT-------AATACCATTCC------AGAACCAA------TTATT--AGTTCTGTAAAACATAACACA-ATACA-CACATACGATA-TTCTC--TTGA--GGCTCAAAAAGTATACGAACTGTTG-ATC-AGGCAAT-T-----GT----TTATCTAATATGG-TA-CATAGGTATGCTTGAT-T-TCATGGTCTGCTTC-TT--G-TTATGTAATGG-AAGGT----TAA--------------TGATT-ATACA--A-AATTTAGCAGATGATTACCT-ATAGTCTCAGTT--A--TAAA------TCA-TT-TATT-AAAATG-TGA-TT-TTG------------T----TAT--------------------TCT----TTATTAAACTATGTAT-----T---CGTTGAT-AA-TGTAC----GTAATC---AGACAGTCCCGTT-AAGTTC-GAAAAAAAACA--CCAAACA----TTCCAAACGCGGATCCA-GCGCCGGGCAAC-AGA------------CATTGT-TCTCGAACACAGTTCAATAACTGTA-TGATATGCATA-T-GG-TAGTGATAGATATTC---AAAACCTTTT----GAATAATT--c
gi|5 : CGAACTGTTG-GCT-GGGC-AC-TAGTCAGTCCTATT-TTT-AT-TGGCTA-TGCAAGT-CACGTGAT-TCT--TGGTCTACTGCATT--GTTTACGAAATGACAAGGT----TCACTTGAAATGCAGACT-TTG-GTAG-ATG-AAA--AGCAG-------------AG---CAGAATCACGAAAAATAGCATTA-TT-AATT-AGGATA-TTAGATATAGGT-ATGTATGATT----TATGCAGTTATAAGTATATTTAATTT----TT-ATGAACTA-GTGAA----TA--CGTTGACAAA-TGTAC----GCTGTC---ACAATGTCCTG-TAAAGTT
gi|6 : TTA-AT-----GG-------AA-------CC------A--AC--A------TT-TTTTAA--TTGT--AA--------A-ACTCT-CACACTCG-TG-GACTA--TTGAC-TGGTCAACA-GTTTACGAACTGTTG-ACC-GGAC-AGAA-----GTCCGAAT-TCT-AT-TGGCTA-CGTAAGT-CACATGAT-TCTTGTTAT-TG--TTGTT--G-TTATGTAATGGCGATGT----TCACT---GAT------TAATGCAT-------GAATTATTTGAGGAAAAGCA-G-AG---CAAAA--ACGCAAAAAATA-TTG-TC-AATT-AGGATA-T
gi|7 : attT-TGT--TATGAA-CTAAAAGTTGT-ACTG--ATAT---AG-ATTAGAA-----GT-------AT-------C----------------------T-TT--AA--CTGTTAAAC------CACACTCT-AACACTCGCTG-AACTA--TTGAC--GGTCAACA-GT-------CTGTT-----------------------CAAAT-TCT-AT-TGGTTA-CGCAGGT-CGCGTGAT-TCTTGTAG-CTG-----TC--G-TTACATAATGGATATGTTCTCTGATT---GATGCAc
gi|8 : tt-T-----GTCCCATT--CT-AT-TGGCT--CG-ACGT-CACGTGATGTCT--TAGTCTGCTGCTAT--GTTTACGTAAT
gi|9 : tagtccTTGTAAAAGTTATC-TGAGAATCCTTTATCTG--AACT-----CACAC--TCGTTGAAAACATGCAACATACA-CATA-TTTTTT-CCTACATTTTT--AT-ATAA-AACTAATGTGATTAAGAA-------CC------A--AC--A------TT-TT--AA--CTGTTAAAC------TA-caacaaatggccgaggtttactatttgtatgaatgaacaagagactttactttaaacgaacggagagcagaaatacgaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAAAATACTTAAAAAATGTGATGCACTCTATTTTTTTCTTATATAAATCTAATGTGAT