lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222 333333333333333333333333333333333333333333333
lowQualScore : 4 22 1 55 77777777777777777777777777777777777777777777777777777777777777777777777777777777 777 44444 11 111 1 6666666666666666666 55555555555555555 1 11 222222222 111111 1 22 111 444444444 1 666666666666666666666666666666666666666666666 11 9999999999999999999999999999 1111111 1 444444 333333 2222 1 1 555555555555555555 6666666666666666666 1111 11 111111 1111 111 222222 444 1 11 1 9999999999999999999999999999999999999999999999 11 11 11 4444 2222 11 5555555555555555 33333333 9999999999 11
lowQualScore : 0 11 5 6 6 6 55 6 44444444444444444444444444444444444444444444444444444444444444444444444444444444 000 0 66666 33 7 8 444 0 3 1111111111111111111 3 44444444444444444 1 1 11 3 222222222 666666 2 11 3 555 2 3 000000000 2 8 2 999999999999999999999999999999999999999999999 0 99 9999999999999999999999999999 6666666 55 1 111111 66 666666 2222 6 7 6 5 111111111111111111 5555555555555555555 88 3333 00 444444 3 7777 222 555 6 111111 5 333 999 888 7 3 7 7 88 3 6 8888888888888888888888888888888888888888888888 33 0 44 88 0 2222 7 8888 8 3 55 9999999999999999 5 6 11111111 5 1 9999999999 11
lowQualScore : . .. . . . . .. . ................................................................................ ... . ..... .. . . ... . . ................... . ................. . . .. . ......... ...... . .. . ... . . ......... . . . ............................................. . .. ............................ ....... .. . ...... .. ...... .... . . . . .................. ................... .. .... .. ...... . .... ... ... . ...... . ... ... ... . . . . .. . . .............................................. .. . .. .. . .... . .... . . .. ................ . . ........ . . .......... ..
lowQualScore : 0 00 0 0 0 0 00 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000 000 8 22222 88 0 8 000 0 2 2222222222222222222 2 55555555555555555 0 8 00 9 999999999 444444 7 88 2 888 5 5 000000000 5 8 8 222222222222222222222222222222222222222222222 8 88 4444444444444444444444444444 2222222 66 9 888888 99 000000 2222 0 0 7 0 000000000000000000 1111111111111111111 22 9999 55 222222 2 3333 000 111 8 888888 0 888 444 888 7 3 3 7 33 3 7 3333333333333333333333333333333333333333333333 33 7 33 33 7 3333 3 3333 3 7 77 2222222222222222 7 0 22222222 6 8 9999999999 00
consensus : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTT-CAACGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------AT----TTTGTTGATGTTAT----TTTTGAAGGGTTTTTAAGTTCACTATAGGG-TT--TTATGTTAA-AA-ACATTGTCAA---T-----ACA----NTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGGCA-ACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTTAGAATA---------TTCTAACTGTGTCTCGGT-CCCCTCA-CTACACC---------------------AC-CCCTCATGCTGCTTACTG-AAGGA-T-------------G------------AACTG-------TAGTTTTTCTCTC-CNATGTGT-A---TAAT--CAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATT-------------GAA-TTCACTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--A---AAAATTCAAGT-TACGTAAATT--NGCC---GGTTTCGG-CATTTTGGCACGTTAT--GCAC-GGGC---C-AAAA-------AGC--A-------GTC-GTAT--ATAA---TATTTNCTTTAGCTGGGATTGAAA--ATAAGCCAT--A-AATATTGTGTTTGAG----CTAATNTTAATTTCTGTGGAAACGAGGGGTTACGT-AAATTGTC--ATACTTCTTT-GATCGTCGAT----A-TACCAACTCTTCAA------CAACATCAAAGATCGTCCGGCAAGCA
Reference ( gi|1 ) : ATATATTTGACAGAACCATCATG-TCACAACTGGAGATTTGAAGTTTTTCAGCTGGATCTTTGGTCTGAAAACTGGATATTTTTTGTCGACGTTTCTTTAAAACGTTTTTTTAT---TTATTAGTTAATGAA--TTACAATAAATCTTGGGTTTTTTGTTGTTTTTTTCAATTTTATTTATTTATGTTGTTGTATTTTGAAGGG---TTAAGTTCATTAT-----TT--TTATGTTAA-AA-ACATTGTC-----T-----ACA----TTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAATTTTATTACA--TATATTTATTACAGAAGATACAAGGT---------TTC------TGTATTGGCT-ACTTTATCTATGGT-GTTACTGCTGCTAAATTAGTTAGAATA---------TTCTAACTGTGTATCGAT-CCTTTCA-CTACACCGGGTACGGAGGACGTGATAGAACGTTCTCATGCTGCTTACTG-TAGGA---------------G------------AACTG-------TAGTTTTTCTCTC-CCATGTGC-T---TAAT--CAG-----TTATACATTAA--GTGCAATAGGCGTTATC-TGGAACCTTG-GTACTATTTTAAC----ACCACTTAAACTCAGACT-------------AAATTTCACTAGTTA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CATTTT--A---AAAATTCAAGT-TACGT---TT--CGCC---GGTTTCTG-CATTTTGGCAAGTTAT--GCAC-GGCC---CGAAAA-------AGC--A-------GTC-GTAT--GTAA---TATTTCCTTTGGCTTGGATTGAAA--ACAAGCCAT-AA-AATATTGTGTTTGAG----CTTATGTTAATTTCTGTGGAAAAGAGGGGTTATTT-ATATCGTC--ATACTTCTTT-GATCGCCGAT----A-TACCAAGTTTTCAA--TGTACACCATCAAAGATCGTCCGACAAGCA
gi|2 : TCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTT-CAACGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------AT----TTTGTTGATGTTAT----TTTTGAAGGGTTTTTAAGTTCACTATAGGGCTT--TTGTTTT-A-AA-ACATTGTCAA---TTTAAAACA----GTTTACACATTGAGAGGTATTG-AA-T---C-AAATAACCAATTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTCTGTTAGTGTATAGGCCAATTTTATCTTTGGC-GGTAGTGCTACTAAACTAGTTAGAATA---------TT-TAACTGTGTCTCGGTCCCCCTCACCCACACC--------------------------CTCATGCTGCTTACTG-AATGAGTTGATGATGTAACTG------------AACTG-------TAGTTTTTCTCTC-CAATG---------AATAACAGCTATACTATACATT-A--GTGCAATAGAAGTAATTGTGGGCCCTTGAAAACTACTTTAAT----ACCACTTAAACTCAA--------------------TTCACAGGACA-CT--GTCTGTTGAATTTACTAGA-ATACTTAGG-CTTTTC--A---AAAATTCAAGT-TACGTAAATT--GGCC---G
gi|6 : atggGTCCATTGC-----TTCATTAT-TTAC-AATAAATCTTC-----T-----ACAGTAACTTAACACATTGAGA---A--AGAAGTAAAT-AAATAACCAACTTTATTTCTGTTATATTTATTATGGAAGATACAAG-T---------TTC------TGTATTGGCA-ACTTTATCCATGGTTGGTACTGCTGCTAAATAAGTTAGAATA---------TTCTAACT--GTGTC--------TCA--TGCA----GTCCCCAGCTCCTCA---AAC--CCTCATGTTGCTTACTG-AAGGAATTGATGCAACT---G------------AACTG-------TAGTTTTTCTCTC-TAATGTACATGTATAAT--CAG-----CTATcatacttttttgatcgtcgagaccaact
gi|3 : TTCACTATAGGG-CT--TT-TGTTGA-AA-ACATTGTCAATTTT-----ACA----GTTAACACATTTAGA---AGTA-AA-T---T-AAATAACCAACTTTATTTCA--CATATTTATTGCGCAAGA------GT---------TTC------TGTATAGGCA-ACTT----TATGGT-GGTACTGTTGCTAAACTAGTtgtagcgatggataaacgaga
gi|16 : TTCT-----TT--TTATGTTAATAA-AC-TTGCC-----T-----TCA----TTTAACACA-TGGGA---ATTT-TAGTA--TGAAATAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccctcatgctgcttactgaaggagttgatgcaactaaactgcagtttatctctccatgtgtgtcatcagctttatacattaagtgcaacagacctaatctggacccttggaacttctttaacaccacttaaactcagattcacagacactgttgaatttagctagatacttaagtcttctatgctgcaggaacattttaaaaattcaagtagcgtttcgctggtttcagcattttagcatgttatgcactggcccaaaaagcatactttagtagttataaatatatttcctatagctgggattgaaaacaagccattaatagtattgtgtctgtgctaattttaattgctgtggaaacgaggggtcataattctttgatcgtcgattccaactcttcaacatcaaagatcgcccagcaggc
gi|11 : gttcccTTATTTCA--CATATTTATTACGGAAGATACAGGGT---------TCC------TGTATAGGCA-ACTTTA---------------GCTGCTAAACTAG
gi|8 : ATTACA--TATATTTATTATGGAAGATACAAAGT---------TTC------TGTATAGGCA-ACTTTATCTATGGT-GGTACTGCTGCTATACTATAAAGAATA---------TTCTAACTGTGTCTCAGT-CCCCTC----ACACC------------------------TTC--ATGCTGCTTACTGATGCAACT-------------G------------AACTG-------TAGTTTTTCTCTC-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccct
gi|22 : ATCTATAACGGAAGATACAAGGT---------TCC------TGTATaagg
gi|5 : TTGTCACAGAAGATACAAGGTAAAACTGTATAG------TGTATAGGCA-ACTTTATCTATTGT-GGTAGTGCTACTAAACTAGTTAGAATAATAAGAATATTCTAACTTTGTCTCAGT-CC---CC-CT-CACC---------------------ACACCCTCATGCTGCTTACTG-AAGGA---------------GTTGATATGT---AACTGAACTGTATAGTTTTTCTCT--CCATATGT-A---TAAT--CAG-----CTATACATT-A--GAGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTCAC----ACCACTTAAACTCAGATT-------------CAAAGACACT-GTCT-TTAGAATT-TA---TTTA---GATACT-TTG-T-CTTTTTC-A---AAAATTCAAGT-TACGTTAATT--CGCT---GGTag
gi|3 : tgatcaacatcaaaaCTCATGCTGCTTACTG-AAGGA---------------GTTGATGCAACTAAACTG-------CAGTTTATCTCTC-C-ATGTGT-G---TCAT--CAGCT---TTATACATTAA--GTGCAACAGACCTAATC-TGGACCCTTG-GAACTTCTTTAAC----ACCACTTAAACTCAGATTCACAGACACTGTTGAATTTAGCTAGATACTTAAGTCT-TC---TATGCT-G---CA-GGA-A-CATTTT--A---AAAATTCAAGT-AGCGT---TT--CGCT---GGTTTCAG-CATTTTAGCATGTTAT--GCACTGGCC---C-AAAA-------AGC--ATACTTTAGTA-GT-T--ATAAATATATTTCCTATAGCTGGGATTGAAA--ACAAGCCATTAATAGTATTGTGTCTGTG----CTAATTTTAATTGCTGTGGAAACGAGGGGT-------------C--ATAATTCTTT-GATCGTCGAT------T-CCAACTCTTCAA---------CATCAAAGATCGCCCAGCAGGCacttttttgatcatcaataccaactcttcaacatcaaagcac
gi|10 : ttcactatagggcttttgttgaaaacattgtcaattttacagttaacacatttagaagtaaattaaataaccaactttatttcacatatttattgcgcaagagtttctgtataggcaactttatggtggtactgttgctaaactagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncc---------------G------------AACTA-------TAGTTTTTTTCTCTCCACATGT-A---TAAT--CAG-----CTATACATTAAATATGCAATTGACATAATC-TGGACCATTG-G-----------------CCACTTTAACTCAGATT-------------
gi|17 : agttgatgctact---------------G------------AACTG-------TAGTTTTTCTCT--CCATATGA-A---TAAC--CAGCTATACTATACATT-A--GTGCAATAGcacagga
gi|19 : at---------------G------------AACTG-------TAGTTTTTCTCTC-TAATGTACATGTATAAT--CAG-----CTaagta
gi|13 : aattgatgcaactTTTTTCTCTC-C-ACGTGT-A---TAAT--CAG-----CTATACATTAAATATGCAGTTGACATAATC-TGGACCATTG------------------ACCACTTTAACTCAGATT-------------
gi|4 : --GTGCAAGAAACGTAATC-TGGACCCTTA-GAACTACTTTAACATGTACCACTTAAACTCAGA-T-------------GAA-TTCACAAGTcacagga
gi|4 : TGGTAA-TTTAGTCT-TC---TTTGCT----ACA-GGA-G-CAATTT--A---AAAATTCAAGT-TACAT---TT--CTCC---GATTTCGG-CATTTTGGCACATTAT--GCAT-GGGC---CCAAAA-------AGCATA-------GTC-ATAA--AT-A---TATTTGCTTTAGCTGTGATTGAAA--ATGACCCAT--A-AATATTGTGTTTGAG----CTAATACTATTTTCTGTGAACACAAGGG-------------GTC--ATACTTCTTT-GATCGTCAATACCAA-TACCA--TATTCAGACTCTTCAACATCAAAGATCGTCC--CAACCAactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaatggtaatttagtcttctttgctacaggagcaatttaaaaattcaagttacatttctccgatttcggcattttggcacattatgcatgggcccaaaaagcatagtcataaatatatttgctttagctgtgattgaaaatgacccataaatattgtgtttgagctaatactattttctgtgaacacaaggggtcatacttctttgatcgtcaataccaataccatattcagactcttcaacatcaaagatcgtcccaaccag
gi|7 : gtgcaagaaacgtaatctggacccttagaactactttaacatgtaccacttaaactcagatgaattcacaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaaTTT-CC---TCTGTT-GG-ACA-C-A-G-CATTTT--TTTTAATATTT--GTATATCT---TTGTCGTTATTGGTTTTTGGCATTT-GGCAAGTTATCAGCAC-GGGCGTTTAAAAAGTCATTTAGT--A-------GTCAGTATTAATAA---TATTTA--TTGAC-TGGTGTGTAATTATAAGCCAT-TT-AATAC--TGTTTGAAGACTTTTATGTTTATTTTTg
gi|20 : c-GA-ATACTTA-GGCTTTTC--A---AAAATTCAAGT-TACGTAAATT--GGCC---G
gi|14 : ta-TTA-G-TCTTTTTCA---AAAATTCAAGT-TACGTAAATT--GGCC---GATcata
gi|12 : agatac-TTA-G-TCTTTTTCA---AAAATTCAAGT-TACGTAAATT--GGCC---GATacttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|9 : agatacTTAATTTTTGTGGAAACAAGGGGTTATTTTGTATTGTC--ATACTTCTTT-GATCGTCGAT----A-TACCAAGTTTTCG------ACAACATCAAAGATCGTCCGACAAactttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|14 : GTTACGT-AAATTGGCCGATACTTTTTT-GATCGTCG------A-TACCAACTCTTCAA---------CATCAAAGtcgatgcatagttttcacaagtg
gi|12 : agatacttagtctttttcaaaaattcaaGTTACGT-AAATTGGCCGATACTTTTTTTGATCGTCG------A-TACCAACTCTTCAA---------CATCAAAGgaca
gi|15 : agatacttagtctttttcaaaaattcaaCGTC--ATACTTTTTT-G-TCATCG------A-TACCAAGTTTTgaca
gi|5 : TACTTTTTT-GATCATCA------A-TACCAACTCTTCAA---------CATCAAAGtcactccgacaagctaagcatagttttcacaagtg
gi|18 : tgatcaacatcaaaattgtcacagaagatacaaggtaaaactgtatagtgtataggcaactttatctattgtggtagtgctactaaactagttagaataataagaatattctaactttgtctcagtccccctcaccacaccctcatgctgcttactgaaggagttgatatgtaactgaactgtatagtttttctctccatatgtataatcagctatacattagagcaatagacgtaatctggacccttggaactactttcacaccacttaaactcagattcaaagacactgtctttagaatttatttagatactttgtctttttcaaaaattcaagttacgttaattcgctggAT----ACTACCAAGTTTTCAA------CAACATCAAAGATCGTCCGGAAAGCcac
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): TCTTCTGCTTCTGCCACGTAGTAGCCACAATCATC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 1 2 222 11 55555 555555 6666666 2 222 11111 1 33333333 22222222222222222 222222222 111111 3333333333 1111 1 000000000000000000000000000000 99999999999999 22222222 22222 1111 111 1111 5555555555555555 111 1111 11 11 111111 11 11 5555555555555555555555555555 1 1111 2222 1 11 1 1 111 2222222222222222222 11111111 1111111 4444444
lowQualScore : 5 2 2 2 0 000 2 77 4 88 2 00000 66 777777 2 5555555 0 111 22222 7 7 0 3 99999999 1 0 55555555555555555 99 000000000 444444 5 222 5 0 0000000000 0 4444 3 0 555555555555555555555555555555 88888888888888 66 4 66666666 33333 6666 5 000 2222 0 7777777777777777 8 8 6 22 8 6 6 111 1 2222 8 1 4 4 1 66 4 22 66 1 222222 00 3 6 33 4444444444444444444444444444 0 4444 0000 33 0 3 33 0 4 0 777 3 1 0 9999999999999999999 5 1 66666666 4444444 5555555 44
lowQualScore : . . . . . ... . .. . .. . ..... .. ...... . ....... . ... ..... . . . . ........ . . ................. .. ......... ...... . ... . . .......... . .... . . .............................. .............. .. . ........ ..... .... . ... .... . ................ . . . .. . . . ... . .... . . . . . .. . .. .. . ...... .. . . .. ............................ . .... .... .. . . .. . . . ... . . . ................... . . ........ ....... ....... ..
lowQualScore : 0 5 5 5 0 000 5 00 0 55 5 00000 55 555555 5 0000000 0 555 33333 0 0 0 2 22222222 0 8 44444444444444444 22 000000000 444444 7 333 7 7 2222222222 2 2222 3 8 222222222222222222222222222222 99999999999999 11 0 11111111 00000 8888 7 333 1111 8 8888888888888888 0 0 4 88 0 0 7 777 0 1111 9 8 4 4 0 77 4 11 11 0 888888 22 2 5 88 0000000000000000000000000000 0 5555 8888 55 0 2 88 0 0 0 555 2 0 1 6666666666666666666 0 9 77777777 4444444 8888888 66
consensus : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC---------------------AC-CCCTCATGCTGCTTACTGAAGGAGTTGATG-------TGAACTG--TAGTTTTTCTCTC-C-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATT-CA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAA-GTTACGTAAAT--TCGCCG------GTTTC-GGCATTTTGGCANGTTAT--GCACGGGC---CCAAAA--------AGCATA-----GTC-GTAT--ATAA---TATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-TNAA-TA---TTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATT-G-TCCG-ATACTTCTTT-GATCGTCGAT----A-TACCA-------ACTCTTC-----ACAACATCAAAGATCGTCCGGCAAGCA
Reference ( family-1186 ) : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTTCAA-CGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------ATTTTGTTGAT-------GTTAT-TTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAAT-----ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC---------------------AC-CCCTCATGCTGCTTACTGAAGGA--------------TGAACTG--TAGTTTTTCTCTC-CNATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATT-------------GAATT-CA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAA-GTTACGTAAAT--TNGCCG------GTTTC-GGCATTTTGGCACGTTAT--GCACGGGC---C-AAAA--------AGCA-------GTC-GTAT--ATAA---TATTTNCTTTAGCTGG-GATTGAAA--ATAAGCCA-TAAA-TA---TTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATT-G-TC---ATACTTCTTT-GATCGTCGAT----A-TACCA-------ACTCTTCA----ACAACATCAAAGATCGTCCGGCAAGCA
gi|1 : TCATG-TCACAACTGGAGATTTGAAGTTTTTCAGCTGGATCTTTGGTCTGAAAACTGGATATTTTTTGTCGACGTTTCTTTAAAACGTTTTTTTAT---TTATTAGTTAATGAA--TTACAATAAATCTTGGGTTTTTTGTTGTTTTTTTCAATTTTATTTATTTATGTTGTTGTATTTTGAAGGGTT---AAGTTCATTAT-----TTTTATGTTAA-AAACATTGTC--T-----ACATTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAATTTTATTACA--TATATTTATTACAGAAGATACAAGGT---------TTC------TGTATTGG-CTACTTTATCTATGGT-GTTACTGCTGCTAAATTAGTT---------AGAATATTCTAACTGTGTAT----CGAT-CCTTTCACTACACCGGGTACGGAGGACGTGATAGAACGTTCTCATGCTGCTTACTGTAGGA---------------GAACTG--TAGTTTTTCTCTC-CCATG----TGCTTAATCAGTT-----ATACATTAA--GTGCAATAGGCGTTATC-TGGAACCTTG-GTACTATTTTAAC----ACCACTTAAACTCAGACT-------------AAATTTCA-CTAGTTA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CATTTT--AAAAATTCAA-GTTACGT---T--TCGCCG------GTTTC-TGCATTTTGGCAAGTTAT--GCACGGCC---CGAAAA--------AGCA-------GTC-GTAT--GTAA---TATTTCCTTTGGCTTG-GATTGAAA--ACAAGCCA-TAAAATA---TTGTGTTTGAGCTTATGTTAATTTCTGTGGAAAAGAGGGGTTAT---TTATATC-G-TC---ATACTTCTTT-GATCGCCGAT----A-TACCA-------AGTTTTCAATGTACACCATCAAAGATCGTCCGACAAGCA
gi|10 : atatatttgacagaacca--------------TGAACTA--TAGTTTTTTTCTCTCCACA----TGTATAATCAG-----CTATACATTAAATATGCAATTGACATAATC-TGGACCATTG-G--CCACTTTAAC----
gi|11 : agttgatgctacTTATTTCA--CATATTTATTACGGAAGATACAGGGT---------TCC------TGTATAGG-CAACTTTA---------------GCTGCTAAACTAGtcagattcacagga
gi|12 : -TTA-G-TCTTTTTCAAAAATTCAA-GTTACGTAAAT--TGGCCG------ATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccct
gi|12 : agatacGTTAC---GTAAATT-G-GCCG-ATACTTTTTTTGATCGTCGAT----A---CCA-------ACTCTT-------CAACATCAAAGactttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|13 : agatacttagtctttttcaaaaattcaaTTTTTCTCTC-C-ACG----TGTATAATCAG-----CTATACATTAAATATGCAGTTGACATAATC-TGGACCATTG---ACCACTTTAAC----gaca
gi|14 : -TTA-G-TCTTTTTCAAAAATTCAA-GTTACGTAAAT--TGGCCG------ATtcagattcacagga
gi|14 : agatacGTTAC---GTAAATT-G-GCCG-ATACTTTTTT-GATCGTCG------A-TACCA-------ACTCTT-------CAACATCAAAGacttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|16 : agatacttagtctttttcaaaaattcaa-TTTTATGTTAATAAAC-TTGCC--T-----TCATTTAACACA-TGGGA---ATTT-TAGTA--TGAAATAAgaca
gi|17 : gttcccttctA--------------TGAACTG--TAGTTTTTCTCTC-C-ATA----TGAATAACCAGCTATACTATACATT-A--GTGCAATAGAAGTA
gi|18 : AT----ACTACCA-------AGTTTTCA----ACAACATCAAAGATCGTCCGGAAAGC
gi|19 : --------------TGAACTG--TAGTTTTTCTCTC-TAATGTACATGTATAATCAGCT---gacacagttttctca
gi|2 : aattgatgcaacTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTTCAA-CGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------ATTTTGTTGAT-------GTTAT-TTTTGAAGGGTTTTTAAGTTCACTATAGGGCTTTTGTTTT-A-AAACATTGTCAATTTAAAACAGTTTACACATTGAGAGGTATTG-AA-T---C-AAATAACCAATTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTCTGTTAGTGTATAGGCCAATTTTATCTTTGGC-GGTAGTGCTACTAAACTAGTT---------AGAATATT-TAACTGTGTCT----CGGTCCCCCTCAC----CC---------------------ACACCCTCATGCTGCTTACTGAATGAGTTGATGATGTAACTGAACTG--TAGTTTTTCTCTC-CAA------TGAATAA-CAGCTATACTATACATT-A--GTGCAATAGAAGTAATTGTGGGCCCTTGAAAACTACTTTAAT----ACCACTTAAACTC-------------------AATT-CA-CAGGACA-CT--GTCTGTTGAATTTACTAGA-ATACTTAGG-CTTTTC--AAAAATTCAA-GTTACGTAAAT--TGGCCG------
gi|2 : atggGTTAC---GTAAATT-G-GCCGCATACTTTTTT-GATCGTCG------A-GACCA-------ACTcatacttttttgatcgtcgagaccaact
gi|20 : atggtcatggtcacaactggagatttgaagtttttcagctggagttttggtctgaaaactggagactttttgtcgacatttttttcaacgttttcttatgcgtccttttttaaaaaaatttacaataaattgtgtttgaggtttattttgttgatgttatttttgaagggtttttaagttcactatagggcttttgttttaaaacattgtcaatttaaaacagtttacacattgagaggtattgaatcaaataaccaattttatttcacatatttattacggaagatacaaggtttctgttagtgtataggccaattttatctttggcggtagtgctactaaactagttagaatatttaactgtgtctcggtccccctcacccacaccctcatgctgcttactgaatgagttgatgatgtaactgaactgtagtttttctctccaatgaataacagctatactatacattagtgcaatagaagtaattgtgggcccttgaaaactactttaataccacttaaactcaattcacaggacactgtctgttgaatttactagaatacttaggcttttcaaaaattcaa-GA-ATACTTA-GGCTTTTC--AAAAATTCAA-GTTACGTAAAT--TGGCCG------
gi|22 : taATCTATAACGGAAGATACAAGGT---------TCC------TGTATAGcata
gi|3 : TTCACTATAGGG-CTTT-TGTTGA-AAACATTGTCAATTTT--ACAGTTAACACATTTAGA---AGTA-AA-T---T-AAATAACCAACTTTATTTCA--CATATTTATTGCGCAAGA------GT---------TTC------TGTATAGG-CAACTTTAT----GGT-GGTACTGTTGCTAAACTAGT-------------ANNNNNNNNNNNNNNNN----NNNN-NNNNNNNNNNNNNN---------------------NN-CCCTCATGCTGCTTACTGAAGGAGTTGATGCAAC---TAAACTG--CAGTTTATCTCTC-C-ATG----TGTGTCATCAGCT---TTATACATTAA--GTGCAACAGACCTAATC-TGGACCCTTG-GAACTTCTTTAAC----ACCACTTAAACTCAGATTCACAGACACTGTTGAATT-TAGCTAGATACTTAAGTCT-TC---TATGCT-G---CA-GGA-A-CATTTT--AAAAATTCAA-GTAGCGT---T--TCGCTG------GTTTC-AGCATTTTAGCATGTTAT--GCACTGGC---CCAAAA--------AGCATACTTTAGTA-GT-T--ATAAATATATTTCCTATAGCTGG-GATTGAAA--ACAAGCCA-TTAA-TAGTATTGTGTCTGTGCTAATTTTAATTGCTGTGGAAACGAGGG----------------G-TC---ATAATTCTTT-GATCGTCGAT------T-CCA-------ACTCTT-------CAACATCAAAGATCGCCCAGCAGGC
gi|4 : --GTGCAAGAAACGTAATC-TGGACCCTTA-GAACTACTTTAACATGTACCACTTAAACTCAGA-T-------------GAATT-CA-C
gi|4 : TGGTAA-TTTAGTCT-TC---TTTGCT----ACA-GGA-G-CAATTT--AAAAATTCAA-GTTACAT---T--TCTCCG------ATTTC-GGCATTTTGGCACATTAT--GCATGGGC---CCAAAA--------AGCATA-----GTC-ATAA--ATA----TATTTGCTTTAGCTGT-GATTGAAA--ATGACCCA-TAAA-TA---TTGTGTTTGAGCTAATACTATTTTCTGTGAACACAAGGGGT-----------------C---ATACTTCTTT-GATCGTCAATACCAA-TACCATATTCAGACTCTT-------CAACATCAAAGATCGTCC--CAACCAaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaatggtaatttagtcttctttgctacaggagcaatttaaaaattcaagttacatttctccgatttcggcattttggcacattatgcatgggcccaaaaagcatagtcataaatatatttgctttagctgtgattgaaaatgacccataaatattgtgtttgagctaatactattttctgtgaacacaaggggtcatacttctttgatcgtcaataccaataccatattcagactcttcaacatcaaagatcgtcccaaccag
gi|5 : gtgcaagaaacgtaatctggacccttagaactactttaacatgtaccacttaaactcagatgaattcacaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaaTTGTCACAGAAGATACAAGGTAAAACTGTATAG------TGTATAGG-CAACTTTATCTATTGT-GGTAGTGCTACTAAACTAGTTAGAATAATAAGAATATTCTAACTTTGTCT----CAGTCCCCCTCACCACA--------------------------CCCTCATGCTGCTTACTGAAGGAGTTGATATGTAAC-TGAACTGTATAGTTTTTCTCTC-C-ATA----TGTATAATCAG-----CTATACATT-A--GAGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTCAC----ACCACTTAAACTCAGATTC------------AAAGA-CA-CT-GTCT-TTAGAATT-TA---TTTA---GATACT-TTG-T-CTTTTTC-AAAAATTCAA-GTTACGTTAAT--TCGCTG------GTg
gi|5 : tgatcaacatcaaaaGTTAC---GTTAATTCGCTG---GTACTTTTTT-GATCATCAAT----A---CCA-------ACTCTT-------CAACATCAAAGacttttttgatcatcaataccaactcttcaacatcaaagcac
gi|6 : tgatcaacatcaaaattgtcacagaagatacaaggtaaaactgtatagtgtataggcaactttatctattgtggtagtgctactaaactagttagaataataagaatattctaactttgtctcagtccccctcaccacaccctcatgctgcttactgaaggagttgatatgtaactgaactgtatagtttttctctccatatgtataatcagctatacattagagcaatagacgtaatctggacccttggaactactttcacaccacttaaactcagattcaaagacactgtctttagaatttatttagatactttgtctttttcaaaaattcaaCAGT-----A-ACTTAACACATTGAGA---A--AGAAGTAAAT-AAATAACCAACTTTATTTCTGTTATATTTATTATGGAAGATACAAG-T---------TTC------TGTATTGG-CAACTTTATCCATGGTTGGTACTGCTGCTAAATAAGTT---------AGAATATTCTAACTGTGTCTCATGCAGT-CCCC-AGCTCCTCA---------------------AA-CCCTCATGTTGCTTACTGAAGGAATTGATGCAAC---TGAACTG--TAGTTTTTCTCTC-TAATGTACATGTATAATCAGCT---cac
gi|7 : gtccattgcttcattatttacaataaatcttctaTTT-CC---TCTGTT-GG-ACA-C-A-G-CATTTT--T----TTTAATATT-TGTATATCTTTGTCGTTATTGGTTTTTGGCATTT-GGCAAGTTATCAGCACGGGCGTTT-AAAAAGTCATTTAGTA-------GTCAGTATTAATAA---TATTTA--TTGACTGGTG--TGTAATTATAAGCCATTTAA-TA---C--TGTTTGAattgtagcgatggataaacgaga
gi|8 : cATTACA--TATATTTATTATGGAAGATACAAAGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTATACTATAA---------AGAATATTCTAACTGTGTCT----CAGT-CCCCTCAC-A----------------------------CCTTCATGCTGCTTACTGATGCAAC------------TGAACTG--TAGTTTTTCTCTC-agacttttatgtttattttt
gi|9 : TTAATTTTTGTGGAAACAAGGGGTTATTTTGTA--TT-G-TC---ATACTTCTTT-GATCGTCGAT----A-TACCA-------AGTTTTCG----ACAACATCAAAGATCGTCCGACAAaagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CGTCATACTTTTTTGTCATCGATACCAAGTTTTTCACTCCGACAAGCTAAGCATAGTTTTCACAAGTG
Unaligned ( gi|21 ): TCTTCTGCTTCTGCCACGTAGTAGCCACAATCATC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 1 11 222 11 22222 333333 22222 2222 222 11111 1 44444444 22222222222222222 222222222 111111 3333333333 1111 1 000000000000000000000000000000 5555555 1111111 22222222 22222 1111 111 1111 333333333333333 111 1111 1 11 1 11 11 1 222222 22 22222 2222 1 11 1111 111 2222222222 22222222 1111111 44444444
lowQualScore : 5 1 1 66 000 1 22 1 88 2 66666 22 000000 55555 4444 111 22222 7 7 0 3 33333333 1 0 55555555555555555 99 000000000 444444 5 222 5 0 0000000000 0 4444 3 0 555555555555555555555555555555 0 2222222 4 4444444 55 00000000 33333 6666 5 000 1 1 2222 222222222222222 8 6 22 8 6 8 444 4444 0 555 1 88 2 2 0 3 1 33 33 0 0 888888 33 55555 0000 33 0 3 33 2222 777 3 1 0 888 5555555555 5 44444444 4444444 99999999 44
lowQualScore : . . . .. ... . .. . .. . ..... .. ...... ..... .... ... ..... . . . . ........ . . ................. .. ......... ...... . ... . . .......... . .... . . .............................. . ....... . ....... .. ........ ..... .... . ... . . .... ............... . . .. . . . ... .... . ... . .. . . . . . .. .. . . ...... .. ..... .... .. . . .. .... ... . . . ... .......... . ........ ....... ........ ..
lowQualScore : 0 0 0 55 000 0 00 0 55 5 55555 00 000000 55555 0000 555 33333 0 0 0 2 22222222 0 8 44444444444444444 22 000000000 444444 7 333 7 7 2222222222 2 2222 3 8 222222222222222222222222222222 1 2222222 4 4444444 55 11111111 00000 8888 7 333 6 3 1111 888888888888888 0 4 88 0 0 0 000 8888 0 111 0 88 6 5 2 2 0 88 88 2 0 222222 88 00000 8888 55 0 2 88 0000 555 2 0 1 888 2222222222 0 88888888 4444444 88888888 66
consensus : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC---------------------AC-CCCTCATGCTGCTTACTGAAGGAGTTGATGC-AC---TG-AACTG-------TAGTTTT--TCTCTCC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAAGTTACGTAAATTNGCCGGTTTCGGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
Reference ( family-1186 ) : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC---------------------AC-CCCTCATGCTGCTTACTGAAGGAGTTGATG-------TG-AACTG-------TAGTTTT--TCTCTCC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAAGTTACGTAAATTCGCCGGTTTCGGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGTCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
gi|1 : TCATG-TCACAACTGGAGATTTGAAGTTTTTCAGCTGGATCTTTGGTCTGAAAACTGGATATTTTTTGTCGACGTTTCTTTAAAACGTTTTTTTAT---TTATTAGTTAATGAA--TTACAATAAATCTTGGGTTTTTTGTTGTTTTTTTCAATTTTATTTATTTATGTTGTTGTATTTTGAAGGGTT---AAGTTCATTAT-----TTTTATGTTAA-AAACATTGTC----T---ACATTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAATTTTATTACA--TATATTTATTACAGAAGATACAAGGT---------TTC------TGTATTGG-CTACTTTATCTATGGT-GTTACTGCTGCTAAATTAGTT---------AGAATATTCTAACTGTGTAT----CGAT-CCTTTCACTACACCGGGTACGGAGGACGTGATAGAACGTTCTCATGCTGCTTACTGTAGGAG----------------AACTG-------TAGTTTT--TCTCTCCCATG----TGCTTAATCAGTT-----ATACATTAA--GTGCAATAGGCGTTATC-TGGAACCTTG-GTACTATTTTAAC----ACCACTTAAACTCAGACTA------------AATTTCA-CTAGTTA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CATTTT--AAAAATTCAAGTTACGT---TTCGCCGGTTTCTGCATTTTGGCAAGTTAT--GCACGGCC--CGAAAAAG-C-------AGTC--GTA--T--GTA---ATATTTCCTTTGGCTTG-GATTGAAA--ACAAGCCA-TAAAA---TATTGTGTTTGAGCTTATGTTAATTTCTGTGGAAAAGAGGGGTTAT---TTATATCGTC---ATAC-TTCTTTGATCGCCGAT----A-TACCA-------AGTTTTCAATGTA-CACCATCAAAGATCGTCCGACAAGCA
gi|10 : atatatttgacagaaccaAGTTGATGCTAC---TG-AACTA-------TAGTTTTTTTCTCTCC-ACA----TGTATAATCAG-----CTATACATTAAATATGCAATTGACATAATC-TGGACCATTG-G-----------------CCACTTTAACTCAGATTC------------
gi|11 : TTATTTCA--CATATTTATTACGGAAGATACAGGGT---------TCC------TGTATAGG-CAACTTTA---------------GCTGCTAAACTAGacagga
gi|12 : -TTA-G-TCTTTTTCAAAAATTCAAGTTACGTAAATTGGCCGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccct
gi|12 : agatacGTTAC---GTAAATTGGCCG-ATACTTTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGactttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|13 : agatacttagtctttttcaaaaattcaaTTTT--TCTCTCC-ACG----TGTATAATCAG-----CTATACATTAAATATGCAGTTGACATAATC-TGGACCATTG------------------ACCACTTTAACTCAGATTC------------gaca
gi|14 : -TTA-G-TCTTTTTCAAAAATTCAAGTTACGTAAATTGGCCGATacagga
gi|14 : agatacGTTAC---GTAAATTGGCCG-ATAC-TTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|16 : agatacttagtctttttcaaaaattcaa-TTTTATGTTAATAAAC-TTGCC--TT-----CATTTAACACA-TGGGA---ATTT-TAGTA--TGAAATAAgaca
gi|17 : gttcccttct-------TG-AACTG-------TAGTTTT--TCTCTCC-ATA----TGAATAACCAGCTATACTATACATT-A--GTGCAATAGAAGTA
gi|18 : aAT----ACTACCA-------AGTTTTC-----AACAACATCAAAGATCGTCCGGAAAGC
gi|19 : AATTGATGCAAC---TG-AACTG-------TAGTTTT--TCTCTCTAATGTACATGTATAATCAGCT---gacacagttttctca
gi|2 : TCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTTC-AACGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------ATTTTGTTG----ATGTTAT----TTTTGAAGGGTTTTTAAGTTCACTATAGGGCTTTTGTTTT-A-AAACATTGTCAATTTAAAACAGTTTACACATTGAGAGGTATTG-AA-T---C-AAATAACCAATTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTCTGTTAGTGTATAGGCCAATTTTATCTTTGGC-GGTAGTGCTACTAAACTAGTT---------AGAATATT-TAACTGTGTCT----CGGTCCCCCTCAC----CC---------------------ACACCCTCATGCTGCTTACTGAATGAGTTGATGATGTAACTG-AACTG-------TAGTTTT--TCTCTCC-A-A----TGAATAA-CAGCTATACTATACATT-A--GTGCAATAGAAGTAATTGTGGGCCCTTGAAAACTACTTTAAT----ACCACTTAAACTC-------------------AATTCA-CAGGACA-CT--GTCTGTTGAATTTACTAGA-ATACTTAGG-CTTTTC--AAAAATTCAAGTTACGTAAATTGGCCG
gi|2 : atggGTTAC---GTAAATTGGCCGCATAC-TTTTTTGATCGTCG------A-GACCA-------ACTcatacttttttgatcgtcgagaccaact
gi|20 : atggtcatggtcacaactggagatttgaagtttttcagctggagttttggtctgaaaactggagactttttgtcgacatttttttcaacgttttcttatgcgtccttttttaaaaaaatttacaataaattgtgtttgaggtttattttgttgatgttatttttgaagggtttttaagttcactatagggcttttgttttaaaacattgtcaatttaaaacagtttacacattgagaggtattgaatcaaataaccaattttatttcacatatttattacggaagatacaaggtttctgttagtgtataggccaattttatctttggcggtagtgctactaaactagttagaatatttaactgtgtctcggtccccctcacccacaccctcatgctgcttactgaatgagttgatgatgtaactgaactgtagtttttctctccaatgaataacagctatactatacattagtgcaatagaagtaattgtgggcccttgaaaactactttaataccacttaaactcaattcacaggacactgtctgttgaatttactagaatacttaggcttttcaaaaattcaa-GA-ATACTTA-GGCTTTTC--AAAAATTCAAGTTACGTAAATTGGCCG
gi|22 : taATCTATAACGGAAGATACAAGGT---------TCC------TGTATAGcata
gi|3 : TTCACTATAGGG-CTTT-TGTTGA-AAACATTGTCAATTTT--ACAGTTAACACATTTAGA---AGTA-AA-T---T-AAATAACCAACTTTATTTCA--CATATTTATTGCGCAAGA------GT---------TTC------TGTATAGG-CAACTTTAT----GGT-GGTACTGTTGCTAAACTAGT-------------ANNNNNNNNNNNNNNNN----NNNN-NNNNNNNNNNNNNN---------------------NN-CCCTCATGCTGCTTACTGAAGGAGTTGATGCAAC---TA-AACTG-------CAGTTTA--TCTCTCC-ATG----TGTGTCATCAGCT---TTATACATTAA--GTGCAACAGACCTAATC-TGGACCCTTG-GAACTTCTTTAAC----ACCACTTAAACTCAGATTCACAGACACTGTTGAATTTAGCTAGATACTTAAGTCT-TC---TATGCT-G---CA-GGA-A-CATTTT--AAAAATTCAAGTAGCGT---TTCGCTGGTTTCAGCATTTTAGCATGTTAT--GCACTGGC--CCAAAAAG-CA-----TACTTTAGTAGTT--ATAAATATATTTCCTATAGCTGG-GATTGAAA--ACAAGCCA-T-TAATAGTATTGTGTCTGTGCTAATTTTAATTGCTGTGGAAACGAGGGGT--C---ATAA--------------TTCTTTGATCGTCGAT------T-CCA-------ACTCTT--------CAACATCAAAGATCGCCCAGCAGGC
gi|4 : --GTGCAAGAAACGTAATC-TGGACCCTTA-GAACTACTTTAACATGTACCACTTAAACTCAGAT--------------GAATTCA-C
gi|4 : TGGTAA-TTTAGTCT-TC---TTTGCT----ACA-GGA-G-CAATTT--AAAAATTCAAGTTACAT---TTCTCCGATTTCGGCATTTTGGCACATTAT--GCATGGGC--CCAAAAAG-CA-----TAGTC--ATA--A--ATA----TATTTGCTTTAGCTGT-GATTGAAA--ATGACCCA-T-AAA---TATTGTGTTTGAGCTAATACTATTTTCTGTGAACACAAGGGGTC------------------ATAC-TTCTTTGATCGTCAATACCAA-TACCATATTCAGACTCTT--------CAACATCAAAGATCGTCC--CAACCAaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaatggtaatttagtcttctttgctacaggagcaatttaaaaattcaagttacatttctccgatttcggcattttggcacattatgcatgggcccaaaaagcatagtcataaatatatttgctttagctgtgattgaaaatgacccataaatattgtgtttgagctaatactattttctgtgaacacaaggggtcatacttctttgatcgtcaataccaataccatattcagactcttcaacatcaaagatcgtcccaaccag
gi|5 : gtgcaagaaacgtaatctggacccttagaactactttaacatgtaccacttaaactcagatgaattcacaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaaTTGTCACAGAAGATACAAGGTAAAACTGTATAG------TGTATAGG-CAACTTTATCTATTGT-GGTAGTGCTACTAAACTAGTTAGAATAATAAGAATATTCTAACTTTGTCT----CAGTCCCCCTCACCACA--------------------------CCCTCATGCTGCTTACTGAAGGAGTTGATA-------TGTAACTGAACTGTATAGTTTT--TCTCTCC-ATA----TGTATAATCAG-----CTATACATT-A--GAGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTCAC----ACCACTTAAACTCAGATTC------------AAAGACA-CT-GTCT-TTAGAATT-TA---TTTA---GATACT-TTG-T-CTTTTTC-AAAAATTCAAGTTACGTTAATTCGCTGGTg
gi|5 : tgatcaacatcaaaaGTTAC---GTTAATTCGCTG-GTAC-TTTTTTGATCATCA------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcatcaataccaactcttcaacatcaaagcac
gi|6 : tgatcaacatcaaaattgtcacagaagatacaaggtaaaactgtatagtgtataggcaactttatctattgtggtagtgctactaaactagttagaataataagaatattctaactttgtctcagtccccctcaccacaccctcatgctgcttactgaaggagttgatatgtaactgaactgtatagtttttctctccatatgtataatcagctatacattagagcaatagacgtaatctggacccttggaactactttcacaccacttaaactcagattcaaagacactgtctttagaatttatttagatactttgtctttttcaaaaattcaaACTTAACACATTGAGA---A--AGAAGTAAAT-AAATAACCAACTTTATTTCTGTTATATTTATTATGGAAGATACAAG-T---------TTC------TGTATTGG-CAACTTTATCCATGGTTGGTACTGCTGCTAAATAAGTT---------AGAATATTCTAACTGTGTCTCATGCAGT-CCCC-AGCTCCTCA---------------------AA-CCCTCATGTTGCTTACTGAAGGAATTGATGCAAC---TG-AACTG-------TAGTTTT--TCTCTCTAATGTACATGTATAATCAGCT---cac
gi|7 : gtccattgcttcattatttacaataaatcttctacagtaTTTTGGCATTT-GGCAAGTTATCAGCACGGGCGTTTAAAAAGTCATTTAGTAGTCA-GTA--TTAATA---ATATTTA--TTGACTGGTG--TGTAATTATAAGCCATT-TAA---TAC--TGTTTGAattgtagcgatggataaacgaga
gi|8 : ctttcctctgttggacacagcattttttttaatatttgtatatctttgtcgttattggtATTACA--TATATTTATTATGGAAGATACAAAGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTATACTATAA---------AGAATATTCTAACTGTGTCT----CAGT-CCCCTCAC-A----------------------------CCTTCATGCTGCTTACTGATGCAAC------------TG-AACTG-------TAGTTTT--TCTCTCagacttttatgtttattttt
gi|9 : TTAATTTTTGTGGAAACAAGGGGTTATTTTGTA--TTGTC---ATAC-TTCTTTGATCGTCGAT----A-TACCA-------AGTTTTCG----A-CAACATCAAAGATCGTCCGACAAaagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CGTCATACTTTTTTGTCATCGATACCAAGTTTTTCACTCCGACAAGCTAAGCATAGTTTTCACAAGTG
Unaligned ( gi|21 ): TCTTCTGCTTCTGCCACGTAGTAGCCACAATCATC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 1 11 222 11 22222 333333 22222 2222 222 11111 1 44444444 22222222222222222 222222222 111111 3333333333 1111 1 000000000000000000000000000000 3333333333 1111 22222 1111 111 1111 333333333333333 111 1111 11 11 111111 11 11 11 1 222222 22 22222 2222 1 11 1111 111 1111111111 22222222 1111111 44444444
lowQualScore : 5 1 1 66 000 1 22 1 88 2 66666 22 000000 55555 4444 111 22222 7 7 0 3 33333333 1 0 55555555555555555 99 000000000 444444 5 222 5 0 0000000000 0 4444 3 0 555555555555555555555555555555 3 6666666666 66 55 4 8 8888 99999 6666 5 000 1 1 2222 222222222222222 8 6 22 8 6 6 111 1 2222 8 1 4 4 1 66 4 22 66 1 222222 00 3 1 33 33 0 0 888888 33 55555 0000 33 0 3 33 2222 777 3 1 0 888 8888888888 5 44444444 4444444 99999999 44
lowQualScore : . . . .. ... . .. . .. . ..... .. ...... ..... .... ... ..... . . . . ........ . . ................. .. ......... ...... . ... . . .......... . .... . . .............................. . .......... .. .. . . .... ..... .... . ... . . .... ............... . . .. . . . ... . .... . . . . . .. . .. .. . ...... .. . . .. .. . . ...... .. ..... .... .. . . .. .... ... . . . ... .......... . ........ ....... ........ ..
lowQualScore : 0 0 0 55 000 0 00 0 55 5 55555 00 000000 55555 0000 555 33333 0 0 0 2 22222222 0 8 44444444444444444 22 000000000 444444 7 333 7 7 2222222222 2 2222 3 8 222222222222222222222222222222 4 6666666666 11 55 0 9 9999 44444 8888 7 333 6 3 1111 888888888888888 0 4 88 0 0 7 777 0 1111 9 8 4 4 0 77 4 11 11 0 888888 22 2 0 88 88 2 0 222222 88 00000 8888 55 0 2 88 0000 555 2 0 1 888 8888888888 0 88888888 4444444 88888888 66
consensus : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAA-GTTACGTAAAT--TCGCCG------GTTTC-GGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
Reference ( family-1186 ) : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAA-GTTACGTAAAT--TNGCCG------GTTTC-GGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
gi|1 : TCATG-TCACAACTGGAGATTTGAAGTTTTTCAGCTGGATCTTTGGTCTGAAAACTGGATATTTTTTGTCGACGTTTCTTTAAAACGTTTTTTTAT---TTATTAGTTAATGAA--TTACAATAAATCTTGGGTTTTTTGTTGTTTTTTTCAATTTTATTTATTTATGTTGTTGTATTTTGAAGGGTT---AAGTTCATTAT-----TTTTATGTTAA-AAACATTGTC----T---ACATTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAATTTTATTACA--TATATTTATTACAGAAGATACAAGGT---------TTC------TGTATTGG-CTACTTTATCTATGGT-GTTACTGCTGCTAAATTAGTT---------AGAATATTCTAACTGTGTAT----CGAT-CCTTTCACTACACCGGGTACGGAGGACGTGATAGAACGTTCTCATGCTGCTTACTGTAGGA-------------------GAACTG--TAGTTTT--TCTCTCCC-ATG----TGCTTAATCAG-----TTATACATTAA--GTGCAATAGGCGTTATC-TGGAACCTTG-GTACTATTTTAAC----ACCACTTAAACTCAGACTA------------AATTTCA-CTAGTTA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CATTTT--AAAAATTCAA-GTTACGT---T--TCGCCG------GTTTC-TGCATTTTGGCAAGTTAT--GCACGGCC--CGAAAAAG-C-------AGTC--GTA--T--GTA---ATATTTCCTTTGGCTTG-GATTGAAA--ACAAGCCA-TAAAA---TATTGTGTTTGAGCTTATGTTAATTTCTGTGGAAAAGAGGGGTTAT---TTATATCGTC---ATAC-TTCTTTGATCGCCGAT----A-TACCA-------AGTTTTCAATGTA-CACCATCAAAGATCGTCCGACAAGCA
gi|10 : atatatttgacagaaccaAGTTGATG----CT--A-CTGAACTA--TAGTTTTTTTCTCT-CC-ACA----TGTATAATCAG-----CTATACATTAAATATGCAATTGACATAATC-TGGACCATTG-G-----------------CCACTTTAACTCAGATTC------------
gi|11 : TTATTTCA--CATATTTATTACGGAAGATACAGGGT---------TCC------TGTATAGG-CAACTTTA---------------GCTGCTAAACTAGacagga
gi|12 : -TTA-G-TCTTTTTCAAAAATTCAA-GTTACGTAAAT--TGGCCG------ATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccct
gi|12 : agatacGTTAC---GTAAATTGGCCG-ATACTTTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGactttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|13 : agatacttagtctttttcaaaaattcaaTTTT--TCTCT-CC-ACG----TGTATAATCAG-----CTATACATTAAATATGCAGTTGACATAATC-TGGACCATTG------------------ACCACTTTAACTCAGATTC------------gaca
gi|14 : -TTA-G-TCTTTTTCAAAAATTCAA-GTTACGTAAAT--TGGCCG------ATacagga
gi|14 : agatacGTTAC---GTAAATTGGCCG-ATAC-TTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|16 : agatacttagtctttttcaaaaattcaa-TTTTATGTTAATAAAC-TTGCC--TT-----CATTTAACACA-TGGGA---ATTT-TAGTA--TGAAATAAgaca
gi|17 : gttcccttctTGAACTG--TAGTTTT--TCTCT-CC-ATA----TGAATAACCAGCTATACTATACATT-A--GTGCAATAGAAGTA
gi|18 : aAT----ACTACCA-------AGTTTTC-----AACAACATCAAAGATCGTCCGGAAAGC
gi|19 : AATTGATG----C---AACTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---gacacagttttctca
gi|2 : TCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTTC-AACGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------ATTTTGTTG----ATGTTAT----TTTTGAAGGGTTTTTAAGTTCACTATAGGGCTTTTGTTTT-A-AAACATTGTCAATTTAAAACAGTTTACACATTGAGAGGTATTG-AA-T---C-AAATAACCAATTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTCTGTTAGTGTATAGGCCAATTTTATCTTTGGC-GGTAGTGCTACTAAACTAGTT---------AGAATATT-TAACTGTGTCT----CGGTCCCCCTCAC----CC----ACA-----------------CCCTCATGCTGCTTACTGAATGAGTTGATGATGTA---A-CTGAACTG--TAGTTTT--TCTCT-CC-A-A----TGAATAA-CAGCTATACTATACATT-A--GTGCAATAGAAGTAATTGTGGGCCCTTGAAAACTACTTTAAT----ACCACTTAAACTC-------------------AATTCA-CAGGACA-CT--GTCTGTTGAATTTACTAGA-ATACTTAGG-CTTTTC--AAAAATTCAA-GTTACGTAAAT--TGGCCG------
gi|2 : atggGTTAC---GTAAATTGGCCGCATAC-TTTTTTGATCGTCG------A-GACCA-------ACTcatacttttttgatcgtcgagaccaact
gi|20 : atggtcatggtcacaactggagatttgaagtttttcagctggagttttggtctgaaaactggagactttttgtcgacatttttttcaacgttttcttatgcgtccttttttaaaaaaatttacaataaattgtgtttgaggtttattttgttgatgttatttttgaagggtttttaagttcactatagggcttttgttttaaaacattgtcaatttaaaacagtttacacattgagaggtattgaatcaaataaccaattttatttcacatatttattacggaagatacaaggtttctgttagtgtataggccaattttatctttggcggtagtgctactaaactagttagaatatttaactgtgtctcggtccccctcacccacaccctcatgctgcttactgaatgagttgatgatgtaactgaactgtagtttttctctccaatgaataacagctatactatacattagtgcaatagaagtaattgtgggcccttgaaaactactttaataccacttaaactcaattcacaggacactgtctgttgaatttactagaatacttaggcttttcaaaaattcaa-GA-ATACTTA-GGCTTTTC--AAAAATTCAA-GTTACGTAAAT--TGGCCG------
gi|22 : taATCTATAACGGAAGATACAAGGT---------TCC------TGTATAGcata
gi|3 : TTCACTATAGGG-CTTT-TGTTGA-AAACATTGTCAATTTT--ACAGTTAACACATTTAGA---AGTA-AA-T---T-AAATAACCAACTTTATTTCA--CATATTTATTGCGCAAGA------GT---------TTC------TGTATAGG-CAACTTTAT----GGT-GGTACTGTTGCTAAACTAGT-------------ANNNNNNNNNNNNNNNN----NNNN-NNNNNNNNNNNNNN----NN------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---AACTAAACTG--CAGTTTA--TCTCT-CC-ATG----TGTGTCATCAGCT---TTATACATTAA--GTGCAACAGACCTAATC-TGGACCCTTG-GAACTTCTTTAAC----ACCACTTAAACTCAGATTCACAGACACTGTTGAATTTAGCTAGATACTTAAGTCT-TC---TATGCT-G---CA-GGA-A-CATTTT--AAAAATTCAA-GTAGCGT---T--TCGCTG------GTTTC-AGCATTTTAGCATGTTAT--GCACTGGC--CCAAAAAG-CA-----TACTTTAGTAGTT--ATAAATATATTTCCTATAGCTGG-GATTGAAA--ACAAGCCA-T-TAATAGTATTGTGTCTGTGCTAATTTTAATTGCTGTGGAAACGAGGGGT--C---ATAA--------------TTCTTTGATCGTCGAT------T-CCA-------ACTCTT--------CAACATCAAAGATCGCCCAGCAGGC
gi|4 : --GTGCAAGAAACGTAATC-TGGACCCTTA-GAACTACTTTAACATGTACCACTTAAACTCAGAT--------------GAATTCA-C
gi|4 : TGGTAA-TTTAGTCT-TC---TTTGCT----ACA-GGA-G-CAATTT--AAAAATTCAA-GTTACAT---T--TCTCCG------ATTTC-GGCATTTTGGCACATTAT--GCATGGGC--CCAAAAAG-CA-----TAGTC--ATA--A--ATA----TATTTGCTTTAGCTGT-GATTGAAA--ATGACCCA-T-AAA---TATTGTGTTTGAGCTAATACTATTTTCTGTGAACACAAGGGGTC------------------ATAC-TTCTTTGATCGTCAATACCAA-TACCATATTCAGACTCTT--------CAACATCAAAGATCGTCC--CAACCAaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaatggtaatttagtcttctttgctacaggagcaatttaaaaattcaagttacatttctccgatttcggcattttggcacattatgcatgggcccaaaaagcatagtcataaatatatttgctttagctgtgattgaaaatgacccataaatattgtgtttgagctaatactattttctgtgaacacaaggggtcatacttctttgatcgtcaataccaataccatattcagactcttcaacatcaaagatcgtcccaaccag
gi|5 : gtgcaagaaacgtaatctggacccttagaactactttaacatgtaccacttaaactcagatgaattcacaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaaTTGTCACAGAAGATACAAGGTAAAACTGTATAG------TGTATAGG-CAACTTTATCTATTGT-GGTAGTGCTACTAAACTAGTTAGAATAATAAGAATATTCTAACTTTGTCT----CAGTCCCCCTCACCACA--------------------------CCCTCATGCTGCTTACTGAAGGAGTTGATA----TGTAA-CTGAACTGTATAGTTTT--TCTCT-CC-ATA----TGTATAATCAG-----CTATACATT-A--GAGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTCAC----ACCACTTAAACTCAGATTC------------AAAGACA-CT-GTCT-TTAGAATT-TA---TTTA---GATACT-TTG-T-CTTTTTC-AAAAATTCAA-GTTACGTTAAT--TCGCTG------GTg
gi|5 : tgatcaacatcaaaaGTTAC---GTTAATTCGCTG-GTAC-TTTTTTGATCATCA------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcatcaataccaactcttcaacatcaaagcac
gi|6 : tgatcaacatcaaaattgtcacagaagatacaaggtaaaactgtatagtgtataggcaactttatctattgtggtagtgctactaaactagttagaataataagaatattctaactttgtctcagtccccctcaccacaccctcatgctgcttactgaaggagttgatatgtaactgaactgtatagtttttctctccatatgtataatcagctatacattagagcaatagacgtaatctggacccttggaactactttcacaccacttaaactcagattcaaagacactgtctttagaatttatttagatactttgtctttttcaaaaattcaaACTTAACACATTGAGA---A--AGAAGTAAAT-AAATAACCAACTTTATTTCTGTTATATTTATTATGGAAGATACAAG-T---------TTC------TGTATTGG-CAACTTTATCCATGGTTGGTACTGCTGCTAAATAAGTT---------AGAATATTCTAACTGTGTCTCATGCAGT-CCCC-AGCTCCTCA----AA------------------CCCTCATGTTGCTTACTGAAGGAATTGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---cac
gi|7 : gtccattgcttcattatttacaataaatcttctacagtaTTT-CC---TCTGTT-GG-ACA-C-A-G-CATTTT--T----TTTAATATT-TGTATATCTTTGTCGTTATTGGTTTTTGGCATTT-GGCAAGTTATCAGCACGGGCGTTTAAAAAGTCATTTAGTAGTCA-GTA--TTAATA---ATATTTA--TTGACTGGTG--TGTAATTATAAGCCATT-TAA---TAC--TGTTTGAattgtagcgatggataaacgaga
gi|8 : cATTACA--TATATTTATTATGGAAGATACAAAGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTATACTATAA---------AGAATATTCTAACTGTGTCT----CAGT-CCCCTCAC-A----------------------------CCTTCATGCTGCTTAC---------TGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-Cagacttttatgtttattttt
gi|9 : TTAATTTTTGTGGAAACAAGGGGTTATTTTGTA--TTGTC---ATAC-TTCTTTGATCGTCGAT----A-TACCA-------AGTTTTCG----A-CAACATCAAAGATCGTCCGACAAaagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CGTCATACTTTTTTGTCATCGATACCAAGTTTTTCACTCCGACAAGCTAAGCATAGTTTTCACAAGTG
Unaligned ( gi|21 ): TCTTCTGCTTCTGCCACGTAGTAGCCACAATCATC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 1 11 222 11 22222 333333 22222 2222 222 11111 1 44444444 22222222222222222 222222222 111111 3333333333 1111 1 000000000000000000000000000000 3333333333 1111 22222 1111 111 1111 333333333333333 111 1111 1 11 1 11 11 1 222222 22 22222 2222 1 11 1111 111 1111111111 22222222 1111111 44444444
lowQualScore : 5 1 1 66 000 1 22 1 88 2 66666 22 000000 55555 4444 111 22222 7 7 0 3 33333333 1 0 55555555555555555 99 000000000 444444 5 222 5 0 0000000000 0 4444 3 0 555555555555555555555555555555 3 6666666666 66 55 4 8 8888 99999 6666 5 000 1 1 2222 222222222222222 8 6 22 8 6 8 444 4444 0 555 1 88 2 2 0 3 1 33 33 0 0 888888 33 55555 0000 33 0 3 33 2222 777 3 1 0 888 8888888888 5 44444444 4444444 99999999 44
lowQualScore : . . . .. ... . .. . .. . ..... .. ...... ..... .... ... ..... . . . . ........ . . ................. .. ......... ...... . ... . . .......... . .... . . .............................. . .......... .. .. . . .... ..... .... . ... . . .... ............... . . .. . . . ... .... . ... . .. . . . . . .. .. . . ...... .. ..... .... .. . . .. .... ... . . . ... .......... . ........ ....... ........ ..
lowQualScore : 0 0 0 55 000 0 00 0 55 5 55555 00 000000 55555 0000 555 33333 0 0 0 2 22222222 0 8 44444444444444444 22 000000000 444444 7 333 7 7 2222222222 2 2222 3 8 222222222222222222222222222222 4 6666666666 11 55 0 9 9999 44444 8888 7 333 6 3 1111 888888888888888 0 4 88 0 0 0 000 8888 0 111 0 88 6 5 2 2 0 88 88 2 0 222222 88 00000 8888 55 0 2 88 0000 555 2 0 1 888 8888888888 0 88888888 4444444 88888888 66
consensus : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAAGTTACGTAAATTNGCCGGTTTCGGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
Reference ( family-1186 ) : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAAGTTACGTAAATTCGCCGGTTTCGGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
gi|1 : TCATG-TCACAACTGGAGATTTGAAGTTTTTCAGCTGGATCTTTGGTCTGAAAACTGGATATTTTTTGTCGACGTTTCTTTAAAACGTTTTTTTAT---TTATTAGTTAATGAA--TTACAATAAATCTTGGGTTTTTTGTTGTTTTTTTCAATTTTATTTATTTATGTTGTTGTATTTTGAAGGGTT---AAGTTCATTAT-----TTTTATGTTAA-AAACATTGTC----T---ACATTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAATTTTATTACA--TATATTTATTACAGAAGATACAAGGT---------TTC------TGTATTGG-CTACTTTATCTATGGT-GTTACTGCTGCTAAATTAGTT---------AGAATATTCTAACTGTGTAT----CGAT-CCTTTCACTACACCGGGTACGGAGGACGTGATAGAACGTTCTCATGCTGCTTACTGTAGGA-------------------GAACTG--TAGTTTT--TCTCTCCC-ATG----TGCTTAATCAG-----TTATACATTAA--GTGCAATAGGCGTTATC-TGGAACCTTG-GTACTATTTTAAC----ACCACTTAAACTCAGACTA------------AATTTCA-CTAGTTA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CATTTT--AAAAATTCAAGTTACGT---TTCGCCGGTTTCTGCATTTTGGCAAGTTAT--GCACGGCC--CGAAAAAG-C-------AGTC--GTA--T--GTA---ATATTTCCTTTGGCTTG-GATTGAAA--ACAAGCCA-TAAAA---TATTGTGTTTGAGCTTATGTTAATTTCTGTGGAAAAGAGGGGTTAT---TTATATCGTC---ATAC-TTCTTTGATCGCCGAT----A-TACCA-------AGTTTTCAATGTA-CACCATCAAAGATCGTCCGACAAGCA
gi|10 : atatatttgacagaaccaAGTTGATG----CT--A-CTGAACTA--TAGTTTTTTTCTCT-CC-ACA----TGTATAATCAG-----CTATACATTAAATATGCAATTGACATAATC-TGGACCATTG-G-----------------CCACTTTAACTCAGATTC------------
gi|11 : TTATTTCA--CATATTTATTACGGAAGATACAGGGT---------TCC------TGTATAGG-CAACTTTA---------------GCTGCTAAACTAGacagga
gi|12 : -TTA-G-TCTTTTTCAAAAATTCAAGTTACGTAAATTGGCCGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccct
gi|12 : agatacGTTAC---GTAAATTGGCCG-ATACTTTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGactttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|13 : agatacttagtctttttcaaaaattcaaTTTT--TCTCT-CC-ACG----TGTATAATCAG-----CTATACATTAAATATGCAGTTGACATAATC-TGGACCATTG------------------ACCACTTTAACTCAGATTC------------gaca
gi|14 : -TTA-G-TCTTTTTCAAAAATTCAAGTTACGTAAATTGGCCGATacagga
gi|14 : agatacGTTAC---GTAAATTGGCCG-ATAC-TTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|16 : agatacttagtctttttcaaaaattcaa-TTTTATGTTAATAAAC-TTGCC--TT-----CATTTAACACA-TGGGA---ATTT-TAGTA--TGAAATAAgaca
gi|17 : gttcccttctTGAACTG--TAGTTTT--TCTCT-CC-ATA----TGAATAACCAGCTATACTATACATT-A--GTGCAATAGAAGTA
gi|18 : aAT----ACTACCA-------AGTTTTC-----AACAACATCAAAGATCGTCCGGAAAGC
gi|19 : AATTGATG----C---AACTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---gacacagttttctca
gi|2 : TCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTTC-AACGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------ATTTTGTTG----ATGTTAT----TTTTGAAGGGTTTTTAAGTTCACTATAGGGCTTTTGTTTT-A-AAACATTGTCAATTTAAAACAGTTTACACATTGAGAGGTATTG-AA-T---C-AAATAACCAATTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTCTGTTAGTGTATAGGCCAATTTTATCTTTGGC-GGTAGTGCTACTAAACTAGTT---------AGAATATT-TAACTGTGTCT----CGGTCCCCCTCAC----CC----ACA-----------------CCCTCATGCTGCTTACTGAATGAGTTGATGATGTA---A-CTGAACTG--TAGTTTT--TCTCT-CC-A-A----TGAATAA-CAGCTATACTATACATT-A--GTGCAATAGAAGTAATTGTGGGCCCTTGAAAACTACTTTAAT----ACCACTTAAACTC-------------------AATTCA-CAGGACA-CT--GTCTGTTGAATTTACTAGA-ATACTTAGG-CTTTTC--AAAAATTCAAGTTACGTAAATTGGCCG
gi|2 : atggGTTAC---GTAAATTGGCCGCATAC-TTTTTTGATCGTCG------A-GACCA-------ACTcatacttttttgatcgtcgagaccaact
gi|20 : atggtcatggtcacaactggagatttgaagtttttcagctggagttttggtctgaaaactggagactttttgtcgacatttttttcaacgttttcttatgcgtccttttttaaaaaaatttacaataaattgtgtttgaggtttattttgttgatgttatttttgaagggtttttaagttcactatagggcttttgttttaaaacattgtcaatttaaaacagtttacacattgagaggtattgaatcaaataaccaattttatttcacatatttattacggaagatacaaggtttctgttagtgtataggccaattttatctttggcggtagtgctactaaactagttagaatatttaactgtgtctcggtccccctcacccacaccctcatgctgcttactgaatgagttgatgatgtaactgaactgtagtttttctctccaatgaataacagctatactatacattagtgcaatagaagtaattgtgggcccttgaaaactactttaataccacttaaactcaattcacaggacactgtctgttgaatttactagaatacttaggcttttcaaaaattcaa-GA-ATACTTA-GGCTTTTC--AAAAATTCAAGTTACGTAAATTGGCCG
gi|22 : taATCTATAACGGAAGATACAAGGT---------TCC------TGTATAGcata
gi|3 : TTCACTATAGGG-CTTT-TGTTGA-AAACATTGTCAATTTT--ACAGTTAACACATTTAGA---AGTA-AA-T---T-AAATAACCAACTTTATTTCA--CATATTTATTGCGCAAGA------GT---------TTC------TGTATAGG-CAACTTTAT----GGT-GGTACTGTTGCTAAACTAGT-------------ANNNNNNNNNNNNNNNN----NNNN-NNNNNNNNNNNNNN----NN------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---AACTAAACTG--CAGTTTA--TCTCT-CC-ATG----TGTGTCATCAGCT---TTATACATTAA--GTGCAACAGACCTAATC-TGGACCCTTG-GAACTTCTTTAAC----ACCACTTAAACTCAGATTCACAGACACTGTTGAATTTAGCTAGATACTTAAGTCT-TC---TATGCT-G---CA-GGA-A-CATTTT--AAAAATTCAAGTAGCGT---TTCGCTGGTTTCAGCATTTTAGCATGTTAT--GCACTGGC--CCAAAAAG-CA-----TACTTTAGTAGTT--ATAAATATATTTCCTATAGCTGG-GATTGAAA--ACAAGCCA-T-TAATAGTATTGTGTCTGTGCTAATTTTAATTGCTGTGGAAACGAGGGGT--C---ATAA--------------TTCTTTGATCGTCGAT------T-CCA-------ACTCTT--------CAACATCAAAGATCGCCCAGCAGGC
gi|4 : --GTGCAAGAAACGTAATC-TGGACCCTTA-GAACTACTTTAACATGTACCACTTAAACTCAGAT--------------GAATTCA-C
gi|4 : TGGTAA-TTTAGTCT-TC---TTTGCT----ACA-GGA-G-CAATTT--AAAAATTCAAGTTACAT---TTCTCCGATTTCGGCATTTTGGCACATTAT--GCATGGGC--CCAAAAAG-CA-----TAGTC--ATA--A--ATA----TATTTGCTTTAGCTGT-GATTGAAA--ATGACCCA-T-AAA---TATTGTGTTTGAGCTAATACTATTTTCTGTGAACACAAGGGGTC------------------ATAC-TTCTTTGATCGTCAATACCAA-TACCATATTCAGACTCTT--------CAACATCAAAGATCGTCC--CAACCAaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaatggtaatttagtcttctttgctacaggagcaatttaaaaattcaagttacatttctccgatttcggcattttggcacattatgcatgggcccaaaaagcatagtcataaatatatttgctttagctgtgattgaaaatgacccataaatattgtgtttgagctaatactattttctgtgaacacaaggggtcatacttctttgatcgtcaataccaataccatattcagactcttcaacatcaaagatcgtcccaaccag
gi|5 : gtgcaagaaacgtaatctggacccttagaactactttaacatgtaccacttaaactcagatgaattcacaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaaTTGTCACAGAAGATACAAGGTAAAACTGTATAG------TGTATAGG-CAACTTTATCTATTGT-GGTAGTGCTACTAAACTAGTTAGAATAATAAGAATATTCTAACTTTGTCT----CAGTCCCCCTCACCACA--------------------------CCCTCATGCTGCTTACTGAAGGAGTTGATA----TGTAA-CTGAACTGTATAGTTTT--TCTCT-CC-ATA----TGTATAATCAG-----CTATACATT-A--GAGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTCAC----ACCACTTAAACTCAGATTC------------AAAGACA-CT-GTCT-TTAGAATT-TA---TTTA---GATACT-TTG-T-CTTTTTC-AAAAATTCAAGTTACGTTAATTCGCTGGTg
gi|5 : tgatcaacatcaaaaGTTAC---GTTAATTCGCTG-GTAC-TTTTTTGATCATCA------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcatcaataccaactcttcaacatcaaagcac
gi|6 : tgatcaacatcaaaattgtcacagaagatacaaggtaaaactgtatagtgtataggcaactttatctattgtggtagtgctactaaactagttagaataataagaatattctaactttgtctcagtccccctcaccacaccctcatgctgcttactgaaggagttgatatgtaactgaactgtatagtttttctctccatatgtataatcagctatacattagagcaatagacgtaatctggacccttggaactactttcacaccacttaaactcagattcaaagacactgtctttagaatttatttagatactttgtctttttcaaaaattcaaACTTAACACATTGAGA---A--AGAAGTAAAT-AAATAACCAACTTTATTTCTGTTATATTTATTATGGAAGATACAAG-T---------TTC------TGTATTGG-CAACTTTATCCATGGTTGGTACTGCTGCTAAATAAGTT---------AGAATATTCTAACTGTGTCTCATGCAGT-CCCC-AGCTCCTCA----AA------------------CCCTCATGTTGCTTACTGAAGGAATTGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---cac
gi|7 : gtccattgcttcattatttacaataaatcttctacagtaTTTTGGCATTT-GGCAAGTTATCAGCACGGGCGTTTAAAAAGTCATTTAGTAGTCA-GTA--TTAATA---ATATTTA--TTGACTGGTG--TGTAATTATAAGCCATT-TAA---TAC--TGTTTGAattgtagcgatggataaacgaga
gi|8 : ctttcctctgttggacacagcattttttttaatatttgtatatctttgtcgttattggtATTACA--TATATTTATTATGGAAGATACAAAGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTATACTATAA---------AGAATATTCTAACTGTGTCT----CAGT-CCCCTCAC-A----------------------------CCTTCATGCTGCTTAC---------TGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-Cagacttttatgtttattttt
gi|9 : TTAATTTTTGTGGAAACAAGGGGTTATTTTGTA--TTGTC---ATAC-TTCTTTGATCGTCGAT----A-TACCA-------AGTTTTCG----A-CAACATCAAAGATCGTCCGACAAaagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CGTCATACTTTTTTGTCATCGATACCAAGTTTTTCACTCCGACAAGCTAAGCATAGTTTTCACAAGTG
Unaligned ( gi|21 ): TCTTCTGCTTCTGCCACGTAGTAGCCACAATCATC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 1 11 222 11 22222 333333 22222 2222 222 11111 1 44444444 22222222222222222 222222222 111111 3333333333 1111 1 000000000000000000000000000000 3333333333 1111 22222 1111 111 1111 333333333333333 111 1111 11 11 111111 11 11 11 1 222222 22 22222 2222 1 11 1111 111 1111111111 22222222 1111111 44444444
lowQualScore : 5 1 1 66 000 1 22 1 88 2 66666 22 000000 55555 4444 111 22222 7 7 0 3 33333333 1 0 55555555555555555 99 000000000 444444 5 222 5 0 0000000000 0 4444 3 0 555555555555555555555555555555 3 6666666666 66 55 4 8 8888 99999 6666 5 000 1 1 2222 222222222222222 8 6 22 8 6 6 111 1 2222 8 1 4 4 1 66 4 22 66 1 222222 00 3 1 33 33 0 0 888888 33 55555 0000 33 0 3 33 2222 777 3 1 0 888 8888888888 5 44444444 4444444 99999999 44
lowQualScore : . . . .. ... . .. . .. . ..... .. ...... ..... .... ... ..... . . . . ........ . . ................. .. ......... ...... . ... . . .......... . .... . . .............................. . .......... .. .. . . .... ..... .... . ... . . .... ............... . . .. . . . ... . .... . . . . . .. . .. .. . ...... .. . . .. .. . . ...... .. ..... .... .. . . .. .... ... . . . ... .......... . ........ ....... ........ ..
lowQualScore : 0 0 0 55 000 0 00 0 55 5 55555 00 000000 55555 0000 555 33333 0 0 0 2 22222222 0 8 44444444444444444 22 000000000 444444 7 333 7 7 2222222222 2 2222 3 8 222222222222222222222222222222 4 6666666666 11 55 0 9 9999 44444 8888 7 333 6 3 1111 888888888888888 0 4 88 0 0 7 777 0 1111 9 8 4 4 0 77 4 11 11 0 888888 22 2 0 88 88 2 0 222222 88 00000 8888 55 0 2 88 0000 555 2 0 1 888 8888888888 0 88888888 4444444 88888888 66
consensus : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAA-GTTACGTAAAT--TCGCCG------GTTTC-GGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
Reference ( family-1186 ) : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAA-GTTACGTAAAT--TNGCCG------GTTTC-GGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
gi|1 : TCATG-TCACAACTGGAGATTTGAAGTTTTTCAGCTGGATCTTTGGTCTGAAAACTGGATATTTTTTGTCGACGTTTCTTTAAAACGTTTTTTTAT---TTATTAGTTAATGAA--TTACAATAAATCTTGGGTTTTTTGTTGTTTTTTTCAATTTTATTTATTTATGTTGTTGTATTTTGAAGGGTT---AAGTTCATTAT-----TTTTATGTTAA-AAACATTGTC----T---ACATTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAATTTTATTACA--TATATTTATTACAGAAGATACAAGGT---------TTC------TGTATTGG-CTACTTTATCTATGGT-GTTACTGCTGCTAAATTAGTT---------AGAATATTCTAACTGTGTAT----CGAT-CCTTTCACTACACCGGGTACGGAGGACGTGATAGAACGTTCTCATGCTGCTTACTGTAGGA-------------------GAACTG--TAGTTTT--TCTCTCCC-ATG----TGCTTAATCAG-----TTATACATTAA--GTGCAATAGGCGTTATC-TGGAACCTTG-GTACTATTTTAAC----ACCACTTAAACTCAGACTA------------AATTTCA-CTAGTTA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CATTTT--AAAAATTCAA-GTTACGT---T--TCGCCG------GTTTC-TGCATTTTGGCAAGTTAT--GCACGGCC--CGAAAAAG-C-------AGTC--GTA--T--GTA---ATATTTCCTTTGGCTTG-GATTGAAA--ACAAGCCA-TAAAA---TATTGTGTTTGAGCTTATGTTAATTTCTGTGGAAAAGAGGGGTTAT---TTATATCGTC---ATAC-TTCTTTGATCGCCGAT----A-TACCA-------AGTTTTCAATGTA-CACCATCAAAGATCGTCCGACAAGCA
gi|10 : atatatttgacagaaccaAGTTGATG----CT--A-CTGAACTA--TAGTTTTTTTCTCT-CC-ACA----TGTATAATCAG-----CTATACATTAAATATGCAATTGACATAATC-TGGACCATTG-G-----------------CCACTTTAACTCAGATTC------------
gi|11 : TTATTTCA--CATATTTATTACGGAAGATACAGGGT---------TCC------TGTATAGG-CAACTTTA---------------GCTGCTAAACTAGacagga
gi|12 : -TTA-G-TCTTTTTCAAAAATTCAA-GTTACGTAAAT--TGGCCG------ATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccct
gi|12 : agatacGTTAC---GTAAATTGGCCG-ATACTTTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGactttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|13 : agatacttagtctttttcaaaaattcaaTTTT--TCTCT-CC-ACG----TGTATAATCAG-----CTATACATTAAATATGCAGTTGACATAATC-TGGACCATTG------------------ACCACTTTAACTCAGATTC------------gaca
gi|14 : -TTA-G-TCTTTTTCAAAAATTCAA-GTTACGTAAAT--TGGCCG------ATacagga
gi|14 : agatacGTTAC---GTAAATTGGCCG-ATAC-TTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|16 : agatacttagtctttttcaaaaattcaa-TTTTATGTTAATAAAC-TTGCC--TT-----CATTTAACACA-TGGGA---ATTT-TAGTA--TGAAATAAgaca
gi|17 : gttcccttctTGAACTG--TAGTTTT--TCTCT-CC-ATA----TGAATAACCAGCTATACTATACATT-A--GTGCAATAGAAGTA
gi|18 : aAT----ACTACCA-------AGTTTTC-----AACAACATCAAAGATCGTCCGGAAAGC
gi|19 : AATTGATG----C---AACTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---gacacagttttctca
gi|2 : TCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTTC-AACGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------ATTTTGTTG----ATGTTAT----TTTTGAAGGGTTTTTAAGTTCACTATAGGGCTTTTGTTTT-A-AAACATTGTCAATTTAAAACAGTTTACACATTGAGAGGTATTG-AA-T---C-AAATAACCAATTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTCTGTTAGTGTATAGGCCAATTTTATCTTTGGC-GGTAGTGCTACTAAACTAGTT---------AGAATATT-TAACTGTGTCT----CGGTCCCCCTCAC----CC----ACA-----------------CCCTCATGCTGCTTACTGAATGAGTTGATGATGTA---A-CTGAACTG--TAGTTTT--TCTCT-CC-A-A----TGAATAA-CAGCTATACTATACATT-A--GTGCAATAGAAGTAATTGTGGGCCCTTGAAAACTACTTTAAT----ACCACTTAAACTC-------------------AATTCA-CAGGACA-CT--GTCTGTTGAATTTACTAGA-ATACTTAGG-CTTTTC--AAAAATTCAA-GTTACGTAAAT--TGGCCG------
gi|2 : atggGTTAC---GTAAATTGGCCGCATAC-TTTTTTGATCGTCG------A-GACCA-------ACTcatacttttttgatcgtcgagaccaact
gi|20 : atggtcatggtcacaactggagatttgaagtttttcagctggagttttggtctgaaaactggagactttttgtcgacatttttttcaacgttttcttatgcgtccttttttaaaaaaatttacaataaattgtgtttgaggtttattttgttgatgttatttttgaagggtttttaagttcactatagggcttttgttttaaaacattgtcaatttaaaacagtttacacattgagaggtattgaatcaaataaccaattttatttcacatatttattacggaagatacaaggtttctgttagtgtataggccaattttatctttggcggtagtgctactaaactagttagaatatttaactgtgtctcggtccccctcacccacaccctcatgctgcttactgaatgagttgatgatgtaactgaactgtagtttttctctccaatgaataacagctatactatacattagtgcaatagaagtaattgtgggcccttgaaaactactttaataccacttaaactcaattcacaggacactgtctgttgaatttactagaatacttaggcttttcaaaaattcaa-GA-ATACTTA-GGCTTTTC--AAAAATTCAA-GTTACGTAAAT--TGGCCG------
gi|22 : taATCTATAACGGAAGATACAAGGT---------TCC------TGTATAGcata
gi|3 : TTCACTATAGGG-CTTT-TGTTGA-AAACATTGTCAATTTT--ACAGTTAACACATTTAGA---AGTA-AA-T---T-AAATAACCAACTTTATTTCA--CATATTTATTGCGCAAGA------GT---------TTC------TGTATAGG-CAACTTTAT----GGT-GGTACTGTTGCTAAACTAGT-------------ANNNNNNNNNNNNNNNN----NNNN-NNNNNNNNNNNNNN----NN------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---AACTAAACTG--CAGTTTA--TCTCT-CC-ATG----TGTGTCATCAGCT---TTATACATTAA--GTGCAACAGACCTAATC-TGGACCCTTG-GAACTTCTTTAAC----ACCACTTAAACTCAGATTCACAGACACTGTTGAATTTAGCTAGATACTTAAGTCT-TC---TATGCT-G---CA-GGA-A-CATTTT--AAAAATTCAA-GTAGCGT---T--TCGCTG------GTTTC-AGCATTTTAGCATGTTAT--GCACTGGC--CCAAAAAG-CA-----TACTTTAGTAGTT--ATAAATATATTTCCTATAGCTGG-GATTGAAA--ACAAGCCA-T-TAATAGTATTGTGTCTGTGCTAATTTTAATTGCTGTGGAAACGAGGGGT--C---ATAA--------------TTCTTTGATCGTCGAT------T-CCA-------ACTCTT--------CAACATCAAAGATCGCCCAGCAGGC
gi|4 : --GTGCAAGAAACGTAATC-TGGACCCTTA-GAACTACTTTAACATGTACCACTTAAACTCAGAT--------------GAATTCA-C
gi|4 : TGGTAA-TTTAGTCT-TC---TTTGCT----ACA-GGA-G-CAATTT--AAAAATTCAA-GTTACAT---T--TCTCCG------ATTTC-GGCATTTTGGCACATTAT--GCATGGGC--CCAAAAAG-CA-----TAGTC--ATA--A--ATA----TATTTGCTTTAGCTGT-GATTGAAA--ATGACCCA-T-AAA---TATTGTGTTTGAGCTAATACTATTTTCTGTGAACACAAGGGGTC------------------ATAC-TTCTTTGATCGTCAATACCAA-TACCATATTCAGACTCTT--------CAACATCAAAGATCGTCC--CAACCAaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaatggtaatttagtcttctttgctacaggagcaatttaaaaattcaagttacatttctccgatttcggcattttggcacattatgcatgggcccaaaaagcatagtcataaatatatttgctttagctgtgattgaaaatgacccataaatattgtgtttgagctaatactattttctgtgaacacaaggggtcatacttctttgatcgtcaataccaataccatattcagactcttcaacatcaaagatcgtcccaaccag
gi|5 : gtgcaagaaacgtaatctggacccttagaactactttaacatgtaccacttaaactcagatgaattcacaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaaTTGTCACAGAAGATACAAGGTAAAACTGTATAG------TGTATAGG-CAACTTTATCTATTGT-GGTAGTGCTACTAAACTAGTTAGAATAATAAGAATATTCTAACTTTGTCT----CAGTCCCCCTCACCACA--------------------------CCCTCATGCTGCTTACTGAAGGAGTTGATA----TGTAA-CTGAACTGTATAGTTTT--TCTCT-CC-ATA----TGTATAATCAG-----CTATACATT-A--GAGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTCAC----ACCACTTAAACTCAGATTC------------AAAGACA-CT-GTCT-TTAGAATT-TA---TTTA---GATACT-TTG-T-CTTTTTC-AAAAATTCAA-GTTACGTTAAT--TCGCTG------GTg
gi|5 : tgatcaacatcaaaaGTTAC---GTTAATTCGCTG-GTAC-TTTTTTGATCATCA------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcatcaataccaactcttcaacatcaaagcac
gi|6 : tgatcaacatcaaaattgtcacagaagatacaaggtaaaactgtatagtgtataggcaactttatctattgtggtagtgctactaaactagttagaataataagaatattctaactttgtctcagtccccctcaccacaccctcatgctgcttactgaaggagttgatatgtaactgaactgtatagtttttctctccatatgtataatcagctatacattagagcaatagacgtaatctggacccttggaactactttcacaccacttaaactcagattcaaagacactgtctttagaatttatttagatactttgtctttttcaaaaattcaaACTTAACACATTGAGA---A--AGAAGTAAAT-AAATAACCAACTTTATTTCTGTTATATTTATTATGGAAGATACAAG-T---------TTC------TGTATTGG-CAACTTTATCCATGGTTGGTACTGCTGCTAAATAAGTT---------AGAATATTCTAACTGTGTCTCATGCAGT-CCCC-AGCTCCTCA----AA------------------CCCTCATGTTGCTTACTGAAGGAATTGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---cac
gi|7 : gtccattgcttcattatttacaataaatcttctacagtaTTT-CC---TCTGTT-GG-ACA-C-A-G-CATTTT--T----TTTAATATT-TGTATATCTTTGTCGTTATTGGTTTTTGGCATTT-GGCAAGTTATCAGCACGGGCGTTTAAAAAGTCATTTAGTAGTCA-GTA--TTAATA---ATATTTA--TTGACTGGTG--TGTAATTATAAGCCATT-TAA---TAC--TGTTTGAattgtagcgatggataaacgaga
gi|8 : cATTACA--TATATTTATTATGGAAGATACAAAGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTATACTATAA---------AGAATATTCTAACTGTGTCT----CAGT-CCCCTCAC-A----------------------------CCTTCATGCTGCTTAC---------TGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-Cagacttttatgtttattttt
gi|9 : TTAATTTTTGTGGAAACAAGGGGTTATTTTGTA--TTGTC---ATAC-TTCTTTGATCGTCGAT----A-TACCA-------AGTTTTCG----A-CAACATCAAAGATCGTCCGACAAaagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CGTCATACTTTTTTGTCATCGATACCAAGTTTTTCACTCCGACAAGCTAAGCATAGTTTTCACAAGTG
Unaligned ( gi|21 ): TCTTCTGCTTCTGCCACGTAGTAGCCACAATCATC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 1 11 222 11 22222 333333 22222 2222 222 11111 1 44444444 22222222222222222 222222222 111111 3333333333 1111 1 000000000000000000000000000000 3333333333 1111 22222 1111 111 1111 333333333333333 111 1111 1 11 1 11 11 1 222222 22 22222 2222 1 11 1111 111 1111111111 22222222 1111111 44444444
lowQualScore : 5 1 1 66 000 1 22 1 88 2 66666 22 000000 55555 4444 111 22222 7 7 0 3 33333333 1 0 55555555555555555 99 000000000 444444 5 222 5 0 0000000000 0 4444 3 0 555555555555555555555555555555 3 6666666666 66 55 4 8 8888 99999 6666 5 000 1 1 2222 222222222222222 8 6 22 8 6 8 444 4444 0 555 1 88 2 2 0 3 1 33 33 0 0 888888 33 55555 0000 33 0 3 33 2222 777 3 1 0 888 8888888888 5 44444444 4444444 99999999 44
lowQualScore : . . . .. ... . .. . .. . ..... .. ...... ..... .... ... ..... . . . . ........ . . ................. .. ......... ...... . ... . . .......... . .... . . .............................. . .......... .. .. . . .... ..... .... . ... . . .... ............... . . .. . . . ... .... . ... . .. . . . . . .. .. . . ...... .. ..... .... .. . . .. .... ... . . . ... .......... . ........ ....... ........ ..
lowQualScore : 0 0 0 55 000 0 00 0 55 5 55555 00 000000 55555 0000 555 33333 0 0 0 2 22222222 0 8 44444444444444444 22 000000000 444444 7 333 7 7 2222222222 2 2222 3 8 222222222222222222222222222222 4 6666666666 11 55 0 9 9999 44444 8888 7 333 6 3 1111 888888888888888 0 4 88 0 0 0 000 8888 0 111 0 88 6 5 2 2 0 88 88 2 0 222222 88 00000 8888 55 0 2 88 0000 555 2 0 1 888 8888888888 0 88888888 4444444 88888888 66
consensus : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAAGTTACGTAAATTNGCCGGTTTCGGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
Reference ( family-1186 ) : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAAGTTACGTAAATTCGCCGGTTTCGGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
gi|1 : TCATG-TCACAACTGGAGATTTGAAGTTTTTCAGCTGGATCTTTGGTCTGAAAACTGGATATTTTTTGTCGACGTTTCTTTAAAACGTTTTTTTAT---TTATTAGTTAATGAA--TTACAATAAATCTTGGGTTTTTTGTTGTTTTTTTCAATTTTATTTATTTATGTTGTTGTATTTTGAAGGGTT---AAGTTCATTAT-----TTTTATGTTAA-AAACATTGTC----T---ACATTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAATTTTATTACA--TATATTTATTACAGAAGATACAAGGT---------TTC------TGTATTGG-CTACTTTATCTATGGT-GTTACTGCTGCTAAATTAGTT---------AGAATATTCTAACTGTGTAT----CGAT-CCTTTCACTACACCGGGTACGGAGGACGTGATAGAACGTTCTCATGCTGCTTACTGTAGGA-------------------GAACTG--TAGTTTT--TCTCTCCC-ATG----TGCTTAATCAG-----TTATACATTAA--GTGCAATAGGCGTTATC-TGGAACCTTG-GTACTATTTTAAC----ACCACTTAAACTCAGACTA------------AATTTCA-CTAGTTA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CATTTT--AAAAATTCAAGTTACGT---TTCGCCGGTTTCTGCATTTTGGCAAGTTAT--GCACGGCC--CGAAAAAG-C-------AGTC--GTA--T--GTA---ATATTTCCTTTGGCTTG-GATTGAAA--ACAAGCCA-TAAAA---TATTGTGTTTGAGCTTATGTTAATTTCTGTGGAAAAGAGGGGTTAT---TTATATCGTC---ATAC-TTCTTTGATCGCCGAT----A-TACCA-------AGTTTTCAATGTA-CACCATCAAAGATCGTCCGACAAGCA
gi|10 : atatatttgacagaaccaAGTTGATG----CT--A-CTGAACTA--TAGTTTTTTTCTCT-CC-ACA----TGTATAATCAG-----CTATACATTAAATATGCAATTGACATAATC-TGGACCATTG-G-----------------CCACTTTAACTCAGATTC------------
gi|11 : TTATTTCA--CATATTTATTACGGAAGATACAGGGT---------TCC------TGTATAGG-CAACTTTA---------------GCTGCTAAACTAGacagga
gi|12 : -TTA-G-TCTTTTTCAAAAATTCAAGTTACGTAAATTGGCCGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccct
gi|12 : agatacGTTAC---GTAAATTGGCCG-ATACTTTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGactttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|13 : agatacttagtctttttcaaaaattcaaTTTT--TCTCT-CC-ACG----TGTATAATCAG-----CTATACATTAAATATGCAGTTGACATAATC-TGGACCATTG------------------ACCACTTTAACTCAGATTC------------gaca
gi|14 : -TTA-G-TCTTTTTCAAAAATTCAAGTTACGTAAATTGGCCGATacagga
gi|14 : agatacGTTAC---GTAAATTGGCCG-ATAC-TTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|16 : agatacttagtctttttcaaaaattcaa-TTTTATGTTAATAAAC-TTGCC--TT-----CATTTAACACA-TGGGA---ATTT-TAGTA--TGAAATAAgaca
gi|17 : gttcccttctTGAACTG--TAGTTTT--TCTCT-CC-ATA----TGAATAACCAGCTATACTATACATT-A--GTGCAATAGAAGTA
gi|18 : aAT----ACTACCA-------AGTTTTC-----AACAACATCAAAGATCGTCCGGAAAGC
gi|19 : AATTGATG----C---AACTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---gacacagttttctca
gi|2 : TCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTTC-AACGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------ATTTTGTTG----ATGTTAT----TTTTGAAGGGTTTTTAAGTTCACTATAGGGCTTTTGTTTT-A-AAACATTGTCAATTTAAAACAGTTTACACATTGAGAGGTATTG-AA-T---C-AAATAACCAATTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTCTGTTAGTGTATAGGCCAATTTTATCTTTGGC-GGTAGTGCTACTAAACTAGTT---------AGAATATT-TAACTGTGTCT----CGGTCCCCCTCAC----CC----ACA-----------------CCCTCATGCTGCTTACTGAATGAGTTGATGATGTA---A-CTGAACTG--TAGTTTT--TCTCT-CC-A-A----TGAATAA-CAGCTATACTATACATT-A--GTGCAATAGAAGTAATTGTGGGCCCTTGAAAACTACTTTAAT----ACCACTTAAACTC-------------------AATTCA-CAGGACA-CT--GTCTGTTGAATTTACTAGA-ATACTTAGG-CTTTTC--AAAAATTCAAGTTACGTAAATTGGCCG
gi|2 : atggGTTAC---GTAAATTGGCCGCATAC-TTTTTTGATCGTCG------A-GACCA-------ACTcatacttttttgatcgtcgagaccaact
gi|20 : atggtcatggtcacaactggagatttgaagtttttcagctggagttttggtctgaaaactggagactttttgtcgacatttttttcaacgttttcttatgcgtccttttttaaaaaaatttacaataaattgtgtttgaggtttattttgttgatgttatttttgaagggtttttaagttcactatagggcttttgttttaaaacattgtcaatttaaaacagtttacacattgagaggtattgaatcaaataaccaattttatttcacatatttattacggaagatacaaggtttctgttagtgtataggccaattttatctttggcggtagtgctactaaactagttagaatatttaactgtgtctcggtccccctcacccacaccctcatgctgcttactgaatgagttgatgatgtaactgaactgtagtttttctctccaatgaataacagctatactatacattagtgcaatagaagtaattgtgggcccttgaaaactactttaataccacttaaactcaattcacaggacactgtctgttgaatttactagaatacttaggcttttcaaaaattcaa-GA-ATACTTA-GGCTTTTC--AAAAATTCAAGTTACGTAAATTGGCCG
gi|22 : taATCTATAACGGAAGATACAAGGT---------TCC------TGTATAGcata
gi|3 : TTCACTATAGGG-CTTT-TGTTGA-AAACATTGTCAATTTT--ACAGTTAACACATTTAGA---AGTA-AA-T---T-AAATAACCAACTTTATTTCA--CATATTTATTGCGCAAGA------GT---------TTC------TGTATAGG-CAACTTTAT----GGT-GGTACTGTTGCTAAACTAGT-------------ANNNNNNNNNNNNNNNN----NNNN-NNNNNNNNNNNNNN----NN------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---AACTAAACTG--CAGTTTA--TCTCT-CC-ATG----TGTGTCATCAGCT---TTATACATTAA--GTGCAACAGACCTAATC-TGGACCCTTG-GAACTTCTTTAAC----ACCACTTAAACTCAGATTCACAGACACTGTTGAATTTAGCTAGATACTTAAGTCT-TC---TATGCT-G---CA-GGA-A-CATTTT--AAAAATTCAAGTAGCGT---TTCGCTGGTTTCAGCATTTTAGCATGTTAT--GCACTGGC--CCAAAAAG-CA-----TACTTTAGTAGTT--ATAAATATATTTCCTATAGCTGG-GATTGAAA--ACAAGCCA-T-TAATAGTATTGTGTCTGTGCTAATTTTAATTGCTGTGGAAACGAGGGGT--C---ATAA--------------TTCTTTGATCGTCGAT------T-CCA-------ACTCTT--------CAACATCAAAGATCGCCCAGCAGGC
gi|4 : --GTGCAAGAAACGTAATC-TGGACCCTTA-GAACTACTTTAACATGTACCACTTAAACTCAGAT--------------GAATTCA-C
gi|4 : TGGTAA-TTTAGTCT-TC---TTTGCT----ACA-GGA-G-CAATTT--AAAAATTCAAGTTACAT---TTCTCCGATTTCGGCATTTTGGCACATTAT--GCATGGGC--CCAAAAAG-CA-----TAGTC--ATA--A--ATA----TATTTGCTTTAGCTGT-GATTGAAA--ATGACCCA-T-AAA---TATTGTGTTTGAGCTAATACTATTTTCTGTGAACACAAGGGGTC------------------ATAC-TTCTTTGATCGTCAATACCAA-TACCATATTCAGACTCTT--------CAACATCAAAGATCGTCC--CAACCAaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaatggtaatttagtcttctttgctacaggagcaatttaaaaattcaagttacatttctccgatttcggcattttggcacattatgcatgggcccaaaaagcatagtcataaatatatttgctttagctgtgattgaaaatgacccataaatattgtgtttgagctaatactattttctgtgaacacaaggggtcatacttctttgatcgtcaataccaataccatattcagactcttcaacatcaaagatcgtcccaaccag
gi|5 : gtgcaagaaacgtaatctggacccttagaactactttaacatgtaccacttaaactcagatgaattcacaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaaTTGTCACAGAAGATACAAGGTAAAACTGTATAG------TGTATAGG-CAACTTTATCTATTGT-GGTAGTGCTACTAAACTAGTTAGAATAATAAGAATATTCTAACTTTGTCT----CAGTCCCCCTCACCACA--------------------------CCCTCATGCTGCTTACTGAAGGAGTTGATA----TGTAA-CTGAACTGTATAGTTTT--TCTCT-CC-ATA----TGTATAATCAG-----CTATACATT-A--GAGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTCAC----ACCACTTAAACTCAGATTC------------AAAGACA-CT-GTCT-TTAGAATT-TA---TTTA---GATACT-TTG-T-CTTTTTC-AAAAATTCAAGTTACGTTAATTCGCTGGTg
gi|5 : tgatcaacatcaaaaGTTAC---GTTAATTCGCTG-GTAC-TTTTTTGATCATCA------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcatcaataccaactcttcaacatcaaagcac
gi|6 : tgatcaacatcaaaattgtcacagaagatacaaggtaaaactgtatagtgtataggcaactttatctattgtggtagtgctactaaactagttagaataataagaatattctaactttgtctcagtccccctcaccacaccctcatgctgcttactgaaggagttgatatgtaactgaactgtatagtttttctctccatatgtataatcagctatacattagagcaatagacgtaatctggacccttggaactactttcacaccacttaaactcagattcaaagacactgtctttagaatttatttagatactttgtctttttcaaaaattcaaACTTAACACATTGAGA---A--AGAAGTAAAT-AAATAACCAACTTTATTTCTGTTATATTTATTATGGAAGATACAAG-T---------TTC------TGTATTGG-CAACTTTATCCATGGTTGGTACTGCTGCTAAATAAGTT---------AGAATATTCTAACTGTGTCTCATGCAGT-CCCC-AGCTCCTCA----AA------------------CCCTCATGTTGCTTACTGAAGGAATTGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---cac
gi|7 : gtccattgcttcattatttacaataaatcttctacagtaTTTTGGCATTT-GGCAAGTTATCAGCACGGGCGTTTAAAAAGTCATTTAGTAGTCA-GTA--TTAATA---ATATTTA--TTGACTGGTG--TGTAATTATAAGCCATT-TAA---TAC--TGTTTGAattgtagcgatggataaacgaga
gi|8 : ctttcctctgttggacacagcattttttttaatatttgtatatctttgtcgttattggtATTACA--TATATTTATTATGGAAGATACAAAGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTATACTATAA---------AGAATATTCTAACTGTGTCT----CAGT-CCCCTCAC-A----------------------------CCTTCATGCTGCTTAC---------TGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-Cagacttttatgtttattttt
gi|9 : TTAATTTTTGTGGAAACAAGGGGTTATTTTGTA--TTGTC---ATAC-TTCTTTGATCGTCGAT----A-TACCA-------AGTTTTCG----A-CAACATCAAAGATCGTCCGACAAaagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CGTCATACTTTTTTGTCATCGATACCAAGTTTTTCACTCCGACAAGCTAAGCATAGTTTTCACAAGTG
Unaligned ( gi|21 ): TCTTCTGCTTCTGCCACGTAGTAGCCACAATCATC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 1 11 222 11 22222 333333 22222 2222 222 11111 1 44444444 22222222222222222 222222222 111111 3333333333 1111 1 000000000000000000000000000000 3333333333 1111 22222 1111 111 1111 333333333333333 111 1111 11 11 111111 11 11 11 1 222222 22 22222 2222 1 11 1111 111 1111111111 22222222 1111111 44444444
lowQualScore : 5 1 1 66 000 1 22 1 88 2 66666 22 000000 55555 4444 111 22222 7 7 0 3 33333333 1 0 55555555555555555 99 000000000 444444 5 222 5 0 0000000000 0 4444 3 0 555555555555555555555555555555 3 6666666666 66 55 4 8 8888 99999 6666 5 000 1 1 2222 222222222222222 8 6 22 8 6 6 111 1 2222 8 1 4 4 1 66 4 22 66 1 222222 00 3 1 33 33 0 0 888888 33 55555 0000 33 0 3 33 2222 777 3 1 0 888 8888888888 5 44444444 4444444 99999999 44
lowQualScore : . . . .. ... . .. . .. . ..... .. ...... ..... .... ... ..... . . . . ........ . . ................. .. ......... ...... . ... . . .......... . .... . . .............................. . .......... .. .. . . .... ..... .... . ... . . .... ............... . . .. . . . ... . .... . . . . . .. . .. .. . ...... .. . . .. .. . . ...... .. ..... .... .. . . .. .... ... . . . ... .......... . ........ ....... ........ ..
lowQualScore : 0 0 0 55 000 0 00 0 55 5 55555 00 000000 55555 0000 555 33333 0 0 0 2 22222222 0 8 44444444444444444 22 000000000 444444 7 333 7 7 2222222222 2 2222 3 8 222222222222222222222222222222 4 6666666666 11 55 0 9 9999 44444 8888 7 333 6 3 1111 888888888888888 0 4 88 0 0 7 777 0 1111 9 8 4 4 0 77 4 11 11 0 888888 22 2 0 88 88 2 0 222222 88 00000 8888 55 0 2 88 0000 555 2 0 1 888 8888888888 0 88888888 4444444 88888888 66
consensus : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAA-GTTACGTAAAT--TCGCCG------GTTTC-GGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
Reference ( family-1186 ) : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAA-GTTACGTAAAT--TNGCCG------GTTTC-GGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
gi|1 : TCATG-TCACAACTGGAGATTTGAAGTTTTTCAGCTGGATCTTTGGTCTGAAAACTGGATATTTTTTGTCGACGTTTCTTTAAAACGTTTTTTTAT---TTATTAGTTAATGAA--TTACAATAAATCTTGGGTTTTTTGTTGTTTTTTTCAATTTTATTTATTTATGTTGTTGTATTTTGAAGGGTT---AAGTTCATTAT-----TTTTATGTTAA-AAACATTGTC----T---ACATTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAATTTTATTACA--TATATTTATTACAGAAGATACAAGGT---------TTC------TGTATTGG-CTACTTTATCTATGGT-GTTACTGCTGCTAAATTAGTT---------AGAATATTCTAACTGTGTAT----CGAT-CCTTTCACTACACCGGGTACGGAGGACGTGATAGAACGTTCTCATGCTGCTTACTGTAGGA-------------------GAACTG--TAGTTTT--TCTCTCCC-ATG----TGCTTAATCAG-----TTATACATTAA--GTGCAATAGGCGTTATC-TGGAACCTTG-GTACTATTTTAAC----ACCACTTAAACTCAGACTA------------AATTTCA-CTAGTTA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CATTTT--AAAAATTCAA-GTTACGT---T--TCGCCG------GTTTC-TGCATTTTGGCAAGTTAT--GCACGGCC--CGAAAAAG-C-------AGTC--GTA--T--GTA---ATATTTCCTTTGGCTTG-GATTGAAA--ACAAGCCA-TAAAA---TATTGTGTTTGAGCTTATGTTAATTTCTGTGGAAAAGAGGGGTTAT---TTATATCGTC---ATAC-TTCTTTGATCGCCGAT----A-TACCA-------AGTTTTCAATGTA-CACCATCAAAGATCGTCCGACAAGCA
gi|10 : atatatttgacagaaccaAGTTGATG----CT--A-CTGAACTA--TAGTTTTTTTCTCT-CC-ACA----TGTATAATCAG-----CTATACATTAAATATGCAATTGACATAATC-TGGACCATTG-G-----------------CCACTTTAACTCAGATTC------------
gi|11 : TTATTTCA--CATATTTATTACGGAAGATACAGGGT---------TCC------TGTATAGG-CAACTTTA---------------GCTGCTAAACTAGacagga
gi|12 : -TTA-G-TCTTTTTCAAAAATTCAA-GTTACGTAAAT--TGGCCG------ATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccct
gi|12 : agatacGTTAC---GTAAATTGGCCG-ATACTTTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGactttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|13 : agatacttagtctttttcaaaaattcaaTTTT--TCTCT-CC-ACG----TGTATAATCAG-----CTATACATTAAATATGCAGTTGACATAATC-TGGACCATTG------------------ACCACTTTAACTCAGATTC------------gaca
gi|14 : -TTA-G-TCTTTTTCAAAAATTCAA-GTTACGTAAAT--TGGCCG------ATacagga
gi|14 : agatacGTTAC---GTAAATTGGCCG-ATAC-TTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|16 : agatacttagtctttttcaaaaattcaa-TTTTATGTTAATAAAC-TTGCC--TT-----CATTTAACACA-TGGGA---ATTT-TAGTA--TGAAATAAgaca
gi|17 : gttcccttctTGAACTG--TAGTTTT--TCTCT-CC-ATA----TGAATAACCAGCTATACTATACATT-A--GTGCAATAGAAGTA
gi|18 : aAT----ACTACCA-------AGTTTTC-----AACAACATCAAAGATCGTCCGGAAAGC
gi|19 : AATTGATG----C---AACTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---gacacagttttctca
gi|2 : TCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTTC-AACGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------ATTTTGTTG----ATGTTAT----TTTTGAAGGGTTTTTAAGTTCACTATAGGGCTTTTGTTTT-A-AAACATTGTCAATTTAAAACAGTTTACACATTGAGAGGTATTG-AA-T---C-AAATAACCAATTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTCTGTTAGTGTATAGGCCAATTTTATCTTTGGC-GGTAGTGCTACTAAACTAGTT---------AGAATATT-TAACTGTGTCT----CGGTCCCCCTCAC----CC----ACA-----------------CCCTCATGCTGCTTACTGAATGAGTTGATGATGTA---A-CTGAACTG--TAGTTTT--TCTCT-CC-A-A----TGAATAA-CAGCTATACTATACATT-A--GTGCAATAGAAGTAATTGTGGGCCCTTGAAAACTACTTTAAT----ACCACTTAAACTC-------------------AATTCA-CAGGACA-CT--GTCTGTTGAATTTACTAGA-ATACTTAGG-CTTTTC--AAAAATTCAA-GTTACGTAAAT--TGGCCG------
gi|2 : atggGTTAC---GTAAATTGGCCGCATAC-TTTTTTGATCGTCG------A-GACCA-------ACTcatacttttttgatcgtcgagaccaact
gi|20 : atggtcatggtcacaactggagatttgaagtttttcagctggagttttggtctgaaaactggagactttttgtcgacatttttttcaacgttttcttatgcgtccttttttaaaaaaatttacaataaattgtgtttgaggtttattttgttgatgttatttttgaagggtttttaagttcactatagggcttttgttttaaaacattgtcaatttaaaacagtttacacattgagaggtattgaatcaaataaccaattttatttcacatatttattacggaagatacaaggtttctgttagtgtataggccaattttatctttggcggtagtgctactaaactagttagaatatttaactgtgtctcggtccccctcacccacaccctcatgctgcttactgaatgagttgatgatgtaactgaactgtagtttttctctccaatgaataacagctatactatacattagtgcaatagaagtaattgtgggcccttgaaaactactttaataccacttaaactcaattcacaggacactgtctgttgaatttactagaatacttaggcttttcaaaaattcaa-GA-ATACTTA-GGCTTTTC--AAAAATTCAA-GTTACGTAAAT--TGGCCG------
gi|22 : taATCTATAACGGAAGATACAAGGT---------TCC------TGTATAGcata
gi|3 : TTCACTATAGGG-CTTT-TGTTGA-AAACATTGTCAATTTT--ACAGTTAACACATTTAGA---AGTA-AA-T---T-AAATAACCAACTTTATTTCA--CATATTTATTGCGCAAGA------GT---------TTC------TGTATAGG-CAACTTTAT----GGT-GGTACTGTTGCTAAACTAGT-------------ANNNNNNNNNNNNNNNN----NNNN-NNNNNNNNNNNNNN----NN------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---AACTAAACTG--CAGTTTA--TCTCT-CC-ATG----TGTGTCATCAGCT---TTATACATTAA--GTGCAACAGACCTAATC-TGGACCCTTG-GAACTTCTTTAAC----ACCACTTAAACTCAGATTCACAGACACTGTTGAATTTAGCTAGATACTTAAGTCT-TC---TATGCT-G---CA-GGA-A-CATTTT--AAAAATTCAA-GTAGCGT---T--TCGCTG------GTTTC-AGCATTTTAGCATGTTAT--GCACTGGC--CCAAAAAG-CA-----TACTTTAGTAGTT--ATAAATATATTTCCTATAGCTGG-GATTGAAA--ACAAGCCA-T-TAATAGTATTGTGTCTGTGCTAATTTTAATTGCTGTGGAAACGAGGGGT--C---ATAA--------------TTCTTTGATCGTCGAT------T-CCA-------ACTCTT--------CAACATCAAAGATCGCCCAGCAGGC
gi|4 : --GTGCAAGAAACGTAATC-TGGACCCTTA-GAACTACTTTAACATGTACCACTTAAACTCAGAT--------------GAATTCA-C
gi|4 : TGGTAA-TTTAGTCT-TC---TTTGCT----ACA-GGA-G-CAATTT--AAAAATTCAA-GTTACAT---T--TCTCCG------ATTTC-GGCATTTTGGCACATTAT--GCATGGGC--CCAAAAAG-CA-----TAGTC--ATA--A--ATA----TATTTGCTTTAGCTGT-GATTGAAA--ATGACCCA-T-AAA---TATTGTGTTTGAGCTAATACTATTTTCTGTGAACACAAGGGGTC------------------ATAC-TTCTTTGATCGTCAATACCAA-TACCATATTCAGACTCTT--------CAACATCAAAGATCGTCC--CAACCAaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaatggtaatttagtcttctttgctacaggagcaatttaaaaattcaagttacatttctccgatttcggcattttggcacattatgcatgggcccaaaaagcatagtcataaatatatttgctttagctgtgattgaaaatgacccataaatattgtgtttgagctaatactattttctgtgaacacaaggggtcatacttctttgatcgtcaataccaataccatattcagactcttcaacatcaaagatcgtcccaaccag
gi|5 : gtgcaagaaacgtaatctggacccttagaactactttaacatgtaccacttaaactcagatgaattcacaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaaTTGTCACAGAAGATACAAGGTAAAACTGTATAG------TGTATAGG-CAACTTTATCTATTGT-GGTAGTGCTACTAAACTAGTTAGAATAATAAGAATATTCTAACTTTGTCT----CAGTCCCCCTCACCACA--------------------------CCCTCATGCTGCTTACTGAAGGAGTTGATA----TGTAA-CTGAACTGTATAGTTTT--TCTCT-CC-ATA----TGTATAATCAG-----CTATACATT-A--GAGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTCAC----ACCACTTAAACTCAGATTC------------AAAGACA-CT-GTCT-TTAGAATT-TA---TTTA---GATACT-TTG-T-CTTTTTC-AAAAATTCAA-GTTACGTTAAT--TCGCTG------GTg
gi|5 : tgatcaacatcaaaaGTTAC---GTTAATTCGCTG-GTAC-TTTTTTGATCATCA------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcatcaataccaactcttcaacatcaaagcac
gi|6 : tgatcaacatcaaaattgtcacagaagatacaaggtaaaactgtatagtgtataggcaactttatctattgtggtagtgctactaaactagttagaataataagaatattctaactttgtctcagtccccctcaccacaccctcatgctgcttactgaaggagttgatatgtaactgaactgtatagtttttctctccatatgtataatcagctatacattagagcaatagacgtaatctggacccttggaactactttcacaccacttaaactcagattcaaagacactgtctttagaatttatttagatactttgtctttttcaaaaattcaaACTTAACACATTGAGA---A--AGAAGTAAAT-AAATAACCAACTTTATTTCTGTTATATTTATTATGGAAGATACAAG-T---------TTC------TGTATTGG-CAACTTTATCCATGGTTGGTACTGCTGCTAAATAAGTT---------AGAATATTCTAACTGTGTCTCATGCAGT-CCCC-AGCTCCTCA----AA------------------CCCTCATGTTGCTTACTGAAGGAATTGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---cac
gi|7 : gtccattgcttcattatttacaataaatcttctacagtaTTT-CC---TCTGTT-GG-ACA-C-A-G-CATTTT--T----TTTAATATT-TGTATATCTTTGTCGTTATTGGTTTTTGGCATTT-GGCAAGTTATCAGCACGGGCGTTTAAAAAGTCATTTAGTAGTCA-GTA--TTAATA---ATATTTA--TTGACTGGTG--TGTAATTATAAGCCATT-TAA---TAC--TGTTTGAattgtagcgatggataaacgaga
gi|8 : cATTACA--TATATTTATTATGGAAGATACAAAGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTATACTATAA---------AGAATATTCTAACTGTGTCT----CAGT-CCCCTCAC-A----------------------------CCTTCATGCTGCTTAC---------TGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-Cagacttttatgtttattttt
gi|9 : TTAATTTTTGTGGAAACAAGGGGTTATTTTGTA--TTGTC---ATAC-TTCTTTGATCGTCGAT----A-TACCA-------AGTTTTCG----A-CAACATCAAAGATCGTCCGACAAaagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CGTCATACTTTTTTGTCATCGATACCAAGTTTTTCACTCCGACAAGCTAAGCATAGTTTTCACAAGTG
Unaligned ( gi|21 ): TCTTCTGCTTCTGCCACGTAGTAGCCACAATCATC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 1 11 222 11 22222 333333 22222 2222 222 11111 1 44444444 22222222222222222 222222222 111111 3333333333 1111 1 000000000000000000000000000000 3333333333 1111 22222 1111 111 1111 333333333333333 111 1111 1 11 1 11 11 1 222222 22 22222 2222 1 11 1111 111 1111111111 22222222 1111111 44444444
lowQualScore : 5 1 1 66 000 1 22 1 88 2 66666 22 000000 55555 4444 111 22222 7 7 0 3 33333333 1 0 55555555555555555 99 000000000 444444 5 222 5 0 0000000000 0 4444 3 0 555555555555555555555555555555 3 6666666666 66 55 4 8 8888 99999 6666 5 000 1 1 2222 222222222222222 8 6 22 8 6 8 444 4444 0 555 1 88 2 2 0 3 1 33 33 0 0 888888 33 55555 0000 33 0 3 33 2222 777 3 1 0 888 8888888888 5 44444444 4444444 99999999 44
lowQualScore : . . . .. ... . .. . .. . ..... .. ...... ..... .... ... ..... . . . . ........ . . ................. .. ......... ...... . ... . . .......... . .... . . .............................. . .......... .. .. . . .... ..... .... . ... . . .... ............... . . .. . . . ... .... . ... . .. . . . . . .. .. . . ...... .. ..... .... .. . . .. .... ... . . . ... .......... . ........ ....... ........ ..
lowQualScore : 0 0 0 55 000 0 00 0 55 5 55555 00 000000 55555 0000 555 33333 0 0 0 2 22222222 0 8 44444444444444444 22 000000000 444444 7 333 7 7 2222222222 2 2222 3 8 222222222222222222222222222222 4 6666666666 11 55 0 9 9999 44444 8888 7 333 6 3 1111 888888888888888 0 4 88 0 0 0 000 8888 0 111 0 88 6 5 2 2 0 88 88 2 0 222222 88 00000 8888 55 0 2 88 0000 555 2 0 1 888 8888888888 0 88888888 4444444 88888888 66
consensus : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAAGTTACGTAAATTNGCCGGTTTCGGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
Reference ( family-1186 ) : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAAGTTACGTAAATTCGCCGGTTTCGGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
gi|1 : TCATG-TCACAACTGGAGATTTGAAGTTTTTCAGCTGGATCTTTGGTCTGAAAACTGGATATTTTTTGTCGACGTTTCTTTAAAACGTTTTTTTAT---TTATTAGTTAATGAA--TTACAATAAATCTTGGGTTTTTTGTTGTTTTTTTCAATTTTATTTATTTATGTTGTTGTATTTTGAAGGGTT---AAGTTCATTAT-----TTTTATGTTAA-AAACATTGTC----T---ACATTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAATTTTATTACA--TATATTTATTACAGAAGATACAAGGT---------TTC------TGTATTGG-CTACTTTATCTATGGT-GTTACTGCTGCTAAATTAGTT---------AGAATATTCTAACTGTGTAT----CGAT-CCTTTCACTACACCGGGTACGGAGGACGTGATAGAACGTTCTCATGCTGCTTACTGTAGGA-------------------GAACTG--TAGTTTT--TCTCTCCC-ATG----TGCTTAATCAG-----TTATACATTAA--GTGCAATAGGCGTTATC-TGGAACCTTG-GTACTATTTTAAC----ACCACTTAAACTCAGACTA------------AATTTCA-CTAGTTA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CATTTT--AAAAATTCAAGTTACGT---TTCGCCGGTTTCTGCATTTTGGCAAGTTAT--GCACGGCC--CGAAAAAG-C-------AGTC--GTA--T--GTA---ATATTTCCTTTGGCTTG-GATTGAAA--ACAAGCCA-TAAAA---TATTGTGTTTGAGCTTATGTTAATTTCTGTGGAAAAGAGGGGTTAT---TTATATCGTC---ATAC-TTCTTTGATCGCCGAT----A-TACCA-------AGTTTTCAATGTA-CACCATCAAAGATCGTCCGACAAGCA
gi|10 : atatatttgacagaaccaAGTTGATG----CT--A-CTGAACTA--TAGTTTTTTTCTCT-CC-ACA----TGTATAATCAG-----CTATACATTAAATATGCAATTGACATAATC-TGGACCATTG-G-----------------CCACTTTAACTCAGATTC------------
gi|11 : TTATTTCA--CATATTTATTACGGAAGATACAGGGT---------TCC------TGTATAGG-CAACTTTA---------------GCTGCTAAACTAGacagga
gi|12 : -TTA-G-TCTTTTTCAAAAATTCAAGTTACGTAAATTGGCCGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccct
gi|12 : agatacGTTAC---GTAAATTGGCCG-ATACTTTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGactttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|13 : agatacttagtctttttcaaaaattcaaTTTT--TCTCT-CC-ACG----TGTATAATCAG-----CTATACATTAAATATGCAGTTGACATAATC-TGGACCATTG------------------ACCACTTTAACTCAGATTC------------gaca
gi|14 : -TTA-G-TCTTTTTCAAAAATTCAAGTTACGTAAATTGGCCGATacagga
gi|14 : agatacGTTAC---GTAAATTGGCCG-ATAC-TTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|16 : agatacttagtctttttcaaaaattcaa-TTTTATGTTAATAAAC-TTGCC--TT-----CATTTAACACA-TGGGA---ATTT-TAGTA--TGAAATAAgaca
gi|17 : gttcccttctTGAACTG--TAGTTTT--TCTCT-CC-ATA----TGAATAACCAGCTATACTATACATT-A--GTGCAATAGAAGTA
gi|18 : aAT----ACTACCA-------AGTTTTC-----AACAACATCAAAGATCGTCCGGAAAGC
gi|19 : AATTGATG----C---AACTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---gacacagttttctca
gi|2 : TCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTTC-AACGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------ATTTTGTTG----ATGTTAT----TTTTGAAGGGTTTTTAAGTTCACTATAGGGCTTTTGTTTT-A-AAACATTGTCAATTTAAAACAGTTTACACATTGAGAGGTATTG-AA-T---C-AAATAACCAATTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTCTGTTAGTGTATAGGCCAATTTTATCTTTGGC-GGTAGTGCTACTAAACTAGTT---------AGAATATT-TAACTGTGTCT----CGGTCCCCCTCAC----CC----ACA-----------------CCCTCATGCTGCTTACTGAATGAGTTGATGATGTA---A-CTGAACTG--TAGTTTT--TCTCT-CC-A-A----TGAATAA-CAGCTATACTATACATT-A--GTGCAATAGAAGTAATTGTGGGCCCTTGAAAACTACTTTAAT----ACCACTTAAACTC-------------------AATTCA-CAGGACA-CT--GTCTGTTGAATTTACTAGA-ATACTTAGG-CTTTTC--AAAAATTCAAGTTACGTAAATTGGCCG
gi|2 : atggGTTAC---GTAAATTGGCCGCATAC-TTTTTTGATCGTCG------A-GACCA-------ACTcatacttttttgatcgtcgagaccaact
gi|20 : atggtcatggtcacaactggagatttgaagtttttcagctggagttttggtctgaaaactggagactttttgtcgacatttttttcaacgttttcttatgcgtccttttttaaaaaaatttacaataaattgtgtttgaggtttattttgttgatgttatttttgaagggtttttaagttcactatagggcttttgttttaaaacattgtcaatttaaaacagtttacacattgagaggtattgaatcaaataaccaattttatttcacatatttattacggaagatacaaggtttctgttagtgtataggccaattttatctttggcggtagtgctactaaactagttagaatatttaactgtgtctcggtccccctcacccacaccctcatgctgcttactgaatgagttgatgatgtaactgaactgtagtttttctctccaatgaataacagctatactatacattagtgcaatagaagtaattgtgggcccttgaaaactactttaataccacttaaactcaattcacaggacactgtctgttgaatttactagaatacttaggcttttcaaaaattcaa-GA-ATACTTA-GGCTTTTC--AAAAATTCAAGTTACGTAAATTGGCCG
gi|22 : taATCTATAACGGAAGATACAAGGT---------TCC------TGTATAGcata
gi|3 : TTCACTATAGGG-CTTT-TGTTGA-AAACATTGTCAATTTT--ACAGTTAACACATTTAGA---AGTA-AA-T---T-AAATAACCAACTTTATTTCA--CATATTTATTGCGCAAGA------GT---------TTC------TGTATAGG-CAACTTTAT----GGT-GGTACTGTTGCTAAACTAGT-------------ANNNNNNNNNNNNNNNN----NNNN-NNNNNNNNNNNNNN----NN------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---AACTAAACTG--CAGTTTA--TCTCT-CC-ATG----TGTGTCATCAGCT---TTATACATTAA--GTGCAACAGACCTAATC-TGGACCCTTG-GAACTTCTTTAAC----ACCACTTAAACTCAGATTCACAGACACTGTTGAATTTAGCTAGATACTTAAGTCT-TC---TATGCT-G---CA-GGA-A-CATTTT--AAAAATTCAAGTAGCGT---TTCGCTGGTTTCAGCATTTTAGCATGTTAT--GCACTGGC--CCAAAAAG-CA-----TACTTTAGTAGTT--ATAAATATATTTCCTATAGCTGG-GATTGAAA--ACAAGCCA-T-TAATAGTATTGTGTCTGTGCTAATTTTAATTGCTGTGGAAACGAGGGGT--C---ATAA--------------TTCTTTGATCGTCGAT------T-CCA-------ACTCTT--------CAACATCAAAGATCGCCCAGCAGGC
gi|4 : --GTGCAAGAAACGTAATC-TGGACCCTTA-GAACTACTTTAACATGTACCACTTAAACTCAGAT--------------GAATTCA-C
gi|4 : TGGTAA-TTTAGTCT-TC---TTTGCT----ACA-GGA-G-CAATTT--AAAAATTCAAGTTACAT---TTCTCCGATTTCGGCATTTTGGCACATTAT--GCATGGGC--CCAAAAAG-CA-----TAGTC--ATA--A--ATA----TATTTGCTTTAGCTGT-GATTGAAA--ATGACCCA-T-AAA---TATTGTGTTTGAGCTAATACTATTTTCTGTGAACACAAGGGGTC------------------ATAC-TTCTTTGATCGTCAATACCAA-TACCATATTCAGACTCTT--------CAACATCAAAGATCGTCC--CAACCAaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaatggtaatttagtcttctttgctacaggagcaatttaaaaattcaagttacatttctccgatttcggcattttggcacattatgcatgggcccaaaaagcatagtcataaatatatttgctttagctgtgattgaaaatgacccataaatattgtgtttgagctaatactattttctgtgaacacaaggggtcatacttctttgatcgtcaataccaataccatattcagactcttcaacatcaaagatcgtcccaaccag
gi|5 : gtgcaagaaacgtaatctggacccttagaactactttaacatgtaccacttaaactcagatgaattcacaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaaTTGTCACAGAAGATACAAGGTAAAACTGTATAG------TGTATAGG-CAACTTTATCTATTGT-GGTAGTGCTACTAAACTAGTTAGAATAATAAGAATATTCTAACTTTGTCT----CAGTCCCCCTCACCACA--------------------------CCCTCATGCTGCTTACTGAAGGAGTTGATA----TGTAA-CTGAACTGTATAGTTTT--TCTCT-CC-ATA----TGTATAATCAG-----CTATACATT-A--GAGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTCAC----ACCACTTAAACTCAGATTC------------AAAGACA-CT-GTCT-TTAGAATT-TA---TTTA---GATACT-TTG-T-CTTTTTC-AAAAATTCAAGTTACGTTAATTCGCTGGTg
gi|5 : tgatcaacatcaaaaGTTAC---GTTAATTCGCTG-GTAC-TTTTTTGATCATCA------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcatcaataccaactcttcaacatcaaagcac
gi|6 : tgatcaacatcaaaattgtcacagaagatacaaggtaaaactgtatagtgtataggcaactttatctattgtggtagtgctactaaactagttagaataataagaatattctaactttgtctcagtccccctcaccacaccctcatgctgcttactgaaggagttgatatgtaactgaactgtatagtttttctctccatatgtataatcagctatacattagagcaatagacgtaatctggacccttggaactactttcacaccacttaaactcagattcaaagacactgtctttagaatttatttagatactttgtctttttcaaaaattcaaACTTAACACATTGAGA---A--AGAAGTAAAT-AAATAACCAACTTTATTTCTGTTATATTTATTATGGAAGATACAAG-T---------TTC------TGTATTGG-CAACTTTATCCATGGTTGGTACTGCTGCTAAATAAGTT---------AGAATATTCTAACTGTGTCTCATGCAGT-CCCC-AGCTCCTCA----AA------------------CCCTCATGTTGCTTACTGAAGGAATTGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---cac
gi|7 : gtccattgcttcattatttacaataaatcttctacagtaTTTTGGCATTT-GGCAAGTTATCAGCACGGGCGTTTAAAAAGTCATTTAGTAGTCA-GTA--TTAATA---ATATTTA--TTGACTGGTG--TGTAATTATAAGCCATT-TAA---TAC--TGTTTGAattgtagcgatggataaacgaga
gi|8 : ctttcctctgttggacacagcattttttttaatatttgtatatctttgtcgttattggtATTACA--TATATTTATTATGGAAGATACAAAGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTATACTATAA---------AGAATATTCTAACTGTGTCT----CAGT-CCCCTCAC-A----------------------------CCTTCATGCTGCTTAC---------TGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-Cagacttttatgtttattttt
gi|9 : TTAATTTTTGTGGAAACAAGGGGTTATTTTGTA--TTGTC---ATAC-TTCTTTGATCGTCGAT----A-TACCA-------AGTTTTCG----A-CAACATCAAAGATCGTCCGACAAaagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CGTCATACTTTTTTGTCATCGATACCAAGTTTTTCACTCCGACAAGCTAAGCATAGTTTTCACAAGTG
Unaligned ( gi|21 ): TCTTCTGCTTCTGCCACGTAGTAGCCACAATCATC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 1 11 222 11 22222 333333 22222 2222 222 11111 1 44444444 22222222222222222 222222222 111111 3333333333 1111 1 000000000000000000000000000000 3333333333 1111 22222 1111 111 1111 333333333333333 111 1111 11 11 111111 11 11 11 1 222222 22 22222 2222 1 11 1111 111 1111111111 22222222 1111111 44444444
lowQualScore : 5 1 1 66 000 1 22 1 88 2 66666 22 000000 55555 4444 111 22222 7 7 0 3 33333333 1 0 55555555555555555 99 000000000 444444 5 222 5 0 0000000000 0 4444 3 0 555555555555555555555555555555 3 6666666666 66 55 4 8 8888 99999 6666 5 000 1 1 2222 222222222222222 8 6 22 8 6 6 111 1 2222 8 1 4 4 1 66 4 22 66 1 222222 00 3 1 33 33 0 0 888888 33 55555 0000 33 0 3 33 2222 777 3 1 0 888 8888888888 5 44444444 4444444 99999999 44
lowQualScore : . . . .. ... . .. . .. . ..... .. ...... ..... .... ... ..... . . . . ........ . . ................. .. ......... ...... . ... . . .......... . .... . . .............................. . .......... .. .. . . .... ..... .... . ... . . .... ............... . . .. . . . ... . .... . . . . . .. . .. .. . ...... .. . . .. .. . . ...... .. ..... .... .. . . .. .... ... . . . ... .......... . ........ ....... ........ ..
lowQualScore : 0 0 0 55 000 0 00 0 55 5 55555 00 000000 55555 0000 555 33333 0 0 0 2 22222222 0 8 44444444444444444 22 000000000 444444 7 333 7 7 2222222222 2 2222 3 8 222222222222222222222222222222 4 6666666666 11 55 0 9 9999 44444 8888 7 333 6 3 1111 888888888888888 0 4 88 0 0 7 777 0 1111 9 8 4 4 0 77 4 11 11 0 888888 22 2 0 88 88 2 0 222222 88 00000 8888 55 0 2 88 0000 555 2 0 1 888 8888888888 0 88888888 4444444 88888888 66
consensus : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAA-GTTACGTAAAT--TCGCCG------GTTTC-GGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
Reference ( family-1186 ) : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAA-GTTACGTAAAT--TNGCCG------GTTTC-GGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
gi|1 : TCATG-TCACAACTGGAGATTTGAAGTTTTTCAGCTGGATCTTTGGTCTGAAAACTGGATATTTTTTGTCGACGTTTCTTTAAAACGTTTTTTTAT---TTATTAGTTAATGAA--TTACAATAAATCTTGGGTTTTTTGTTGTTTTTTTCAATTTTATTTATTTATGTTGTTGTATTTTGAAGGGTT---AAGTTCATTAT-----TTTTATGTTAA-AAACATTGTC----T---ACATTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAATTTTATTACA--TATATTTATTACAGAAGATACAAGGT---------TTC------TGTATTGG-CTACTTTATCTATGGT-GTTACTGCTGCTAAATTAGTT---------AGAATATTCTAACTGTGTAT----CGAT-CCTTTCACTACACCGGGTACGGAGGACGTGATAGAACGTTCTCATGCTGCTTACTGTAGGA-------------------GAACTG--TAGTTTT--TCTCTCCC-ATG----TGCTTAATCAG-----TTATACATTAA--GTGCAATAGGCGTTATC-TGGAACCTTG-GTACTATTTTAAC----ACCACTTAAACTCAGACTA------------AATTTCA-CTAGTTA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CATTTT--AAAAATTCAA-GTTACGT---T--TCGCCG------GTTTC-TGCATTTTGGCAAGTTAT--GCACGGCC--CGAAAAAG-C-------AGTC--GTA--T--GTA---ATATTTCCTTTGGCTTG-GATTGAAA--ACAAGCCA-TAAAA---TATTGTGTTTGAGCTTATGTTAATTTCTGTGGAAAAGAGGGGTTAT---TTATATCGTC---ATAC-TTCTTTGATCGCCGAT----A-TACCA-------AGTTTTCAATGTA-CACCATCAAAGATCGTCCGACAAGCA
gi|10 : atatatttgacagaaccaAGTTGATG----CT--A-CTGAACTA--TAGTTTTTTTCTCT-CC-ACA----TGTATAATCAG-----CTATACATTAAATATGCAATTGACATAATC-TGGACCATTG-G-----------------CCACTTTAACTCAGATTC------------
gi|11 : TTATTTCA--CATATTTATTACGGAAGATACAGGGT---------TCC------TGTATAGG-CAACTTTA---------------GCTGCTAAACTAGacagga
gi|12 : -TTA-G-TCTTTTTCAAAAATTCAA-GTTACGTAAAT--TGGCCG------ATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccct
gi|12 : agatacGTTAC---GTAAATTGGCCG-ATACTTTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGactttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|13 : agatacttagtctttttcaaaaattcaaTTTT--TCTCT-CC-ACG----TGTATAATCAG-----CTATACATTAAATATGCAGTTGACATAATC-TGGACCATTG------------------ACCACTTTAACTCAGATTC------------gaca
gi|14 : -TTA-G-TCTTTTTCAAAAATTCAA-GTTACGTAAAT--TGGCCG------ATacagga
gi|14 : agatacGTTAC---GTAAATTGGCCG-ATAC-TTTTTTGATCGTCG------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|16 : agatacttagtctttttcaaaaattcaa-TTTTATGTTAATAAAC-TTGCC--TT-----CATTTAACACA-TGGGA---ATTT-TAGTA--TGAAATAAgaca
gi|17 : gttcccttctTGAACTG--TAGTTTT--TCTCT-CC-ATA----TGAATAACCAGCTATACTATACATT-A--GTGCAATAGAAGTA
gi|18 : aAT----ACTACCA-------AGTTTTC-----AACAACATCAAAGATCGTCCGGAAAGC
gi|19 : AATTGATG----C---AACTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---gacacagttttctca
gi|2 : TCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTTC-AACGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------ATTTTGTTG----ATGTTAT----TTTTGAAGGGTTTTTAAGTTCACTATAGGGCTTTTGTTTT-A-AAACATTGTCAATTTAAAACAGTTTACACATTGAGAGGTATTG-AA-T---C-AAATAACCAATTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTCTGTTAGTGTATAGGCCAATTTTATCTTTGGC-GGTAGTGCTACTAAACTAGTT---------AGAATATT-TAACTGTGTCT----CGGTCCCCCTCAC----CC----ACA-----------------CCCTCATGCTGCTTACTGAATGAGTTGATGATGTA---A-CTGAACTG--TAGTTTT--TCTCT-CC-A-A----TGAATAA-CAGCTATACTATACATT-A--GTGCAATAGAAGTAATTGTGGGCCCTTGAAAACTACTTTAAT----ACCACTTAAACTC-------------------AATTCA-CAGGACA-CT--GTCTGTTGAATTTACTAGA-ATACTTAGG-CTTTTC--AAAAATTCAA-GTTACGTAAAT--TGGCCG------
gi|2 : atggGTTAC---GTAAATTGGCCGCATAC-TTTTTTGATCGTCG------A-GACCA-------ACTcatacttttttgatcgtcgagaccaact
gi|20 : atggtcatggtcacaactggagatttgaagtttttcagctggagttttggtctgaaaactggagactttttgtcgacatttttttcaacgttttcttatgcgtccttttttaaaaaaatttacaataaattgtgtttgaggtttattttgttgatgttatttttgaagggtttttaagttcactatagggcttttgttttaaaacattgtcaatttaaaacagtttacacattgagaggtattgaatcaaataaccaattttatttcacatatttattacggaagatacaaggtttctgttagtgtataggccaattttatctttggcggtagtgctactaaactagttagaatatttaactgtgtctcggtccccctcacccacaccctcatgctgcttactgaatgagttgatgatgtaactgaactgtagtttttctctccaatgaataacagctatactatacattagtgcaatagaagtaattgtgggcccttgaaaactactttaataccacttaaactcaattcacaggacactgtctgttgaatttactagaatacttaggcttttcaaaaattcaa-GA-ATACTTA-GGCTTTTC--AAAAATTCAA-GTTACGTAAAT--TGGCCG------
gi|22 : taATCTATAACGGAAGATACAAGGT---------TCC------TGTATAGcata
gi|3 : TTCACTATAGGG-CTTT-TGTTGA-AAACATTGTCAATTTT--ACAGTTAACACATTTAGA---AGTA-AA-T---T-AAATAACCAACTTTATTTCA--CATATTTATTGCGCAAGA------GT---------TTC------TGTATAGG-CAACTTTAT----GGT-GGTACTGTTGCTAAACTAGT-------------ANNNNNNNNNNNNNNNN----NNNN-NNNNNNNNNNNNNN----NN------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---AACTAAACTG--CAGTTTA--TCTCT-CC-ATG----TGTGTCATCAGCT---TTATACATTAA--GTGCAACAGACCTAATC-TGGACCCTTG-GAACTTCTTTAAC----ACCACTTAAACTCAGATTCACAGACACTGTTGAATTTAGCTAGATACTTAAGTCT-TC---TATGCT-G---CA-GGA-A-CATTTT--AAAAATTCAA-GTAGCGT---T--TCGCTG------GTTTC-AGCATTTTAGCATGTTAT--GCACTGGC--CCAAAAAG-CA-----TACTTTAGTAGTT--ATAAATATATTTCCTATAGCTGG-GATTGAAA--ACAAGCCA-T-TAATAGTATTGTGTCTGTGCTAATTTTAATTGCTGTGGAAACGAGGGGT--C---ATAA--------------TTCTTTGATCGTCGAT------T-CCA-------ACTCTT--------CAACATCAAAGATCGCCCAGCAGGC
gi|4 : --GTGCAAGAAACGTAATC-TGGACCCTTA-GAACTACTTTAACATGTACCACTTAAACTCAGAT--------------GAATTCA-C
gi|4 : TGGTAA-TTTAGTCT-TC---TTTGCT----ACA-GGA-G-CAATTT--AAAAATTCAA-GTTACAT---T--TCTCCG------ATTTC-GGCATTTTGGCACATTAT--GCATGGGC--CCAAAAAG-CA-----TAGTC--ATA--A--ATA----TATTTGCTTTAGCTGT-GATTGAAA--ATGACCCA-T-AAA---TATTGTGTTTGAGCTAATACTATTTTCTGTGAACACAAGGGGTC------------------ATAC-TTCTTTGATCGTCAATACCAA-TACCATATTCAGACTCTT--------CAACATCAAAGATCGTCC--CAACCAaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaatggtaatttagtcttctttgctacaggagcaatttaaaaattcaagttacatttctccgatttcggcattttggcacattatgcatgggcccaaaaagcatagtcataaatatatttgctttagctgtgattgaaaatgacccataaatattgtgtttgagctaatactattttctgtgaacacaaggggtcatacttctttgatcgtcaataccaataccatattcagactcttcaacatcaaagatcgtcccaaccag
gi|5 : gtgcaagaaacgtaatctggacccttagaactactttaacatgtaccacttaaactcagatgaattcacaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaaTTGTCACAGAAGATACAAGGTAAAACTGTATAG------TGTATAGG-CAACTTTATCTATTGT-GGTAGTGCTACTAAACTAGTTAGAATAATAAGAATATTCTAACTTTGTCT----CAGTCCCCCTCACCACA--------------------------CCCTCATGCTGCTTACTGAAGGAGTTGATA----TGTAA-CTGAACTGTATAGTTTT--TCTCT-CC-ATA----TGTATAATCAG-----CTATACATT-A--GAGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTCAC----ACCACTTAAACTCAGATTC------------AAAGACA-CT-GTCT-TTAGAATT-TA---TTTA---GATACT-TTG-T-CTTTTTC-AAAAATTCAA-GTTACGTTAAT--TCGCTG------GTg
gi|5 : tgatcaacatcaaaaGTTAC---GTTAATTCGCTG-GTAC-TTTTTTGATCATCA------A-TACCA-------ACTCTT--------CAACATCAAAGacttttttgatcatcaataccaactcttcaacatcaaagcac
gi|6 : tgatcaacatcaaaattgtcacagaagatacaaggtaaaactgtatagtgtataggcaactttatctattgtggtagtgctactaaactagttagaataataagaatattctaactttgtctcagtccccctcaccacaccctcatgctgcttactgaaggagttgatatgtaactgaactgtatagtttttctctccatatgtataatcagctatacattagagcaatagacgtaatctggacccttggaactactttcacaccacttaaactcagattcaaagacactgtctttagaatttatttagatactttgtctttttcaaaaattcaaACTTAACACATTGAGA---A--AGAAGTAAAT-AAATAACCAACTTTATTTCTGTTATATTTATTATGGAAGATACAAG-T---------TTC------TGTATTGG-CAACTTTATCCATGGTTGGTACTGCTGCTAAATAAGTT---------AGAATATTCTAACTGTGTCTCATGCAGT-CCCC-AGCTCCTCA----AA------------------CCCTCATGTTGCTTACTGAAGGAATTGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-CTAATGTACATGTATAATCAGCT---cac
gi|7 : gtccattgcttcattatttacaataaatcttctacagtaTTT-CC---TCTGTT-GG-ACA-C-A-G-CATTTT--T----TTTAATATT-TGTATATCTTTGTCGTTATTGGTTTTTGGCATTT-GGCAAGTTATCAGCACGGGCGTTTAAAAAGTCATTTAGTAGTCA-GTA--TTAATA---ATATTTA--TTGACTGGTG--TGTAATTATAAGCCATT-TAA---TAC--TGTTTGAattgtagcgatggataaacgaga
gi|8 : cATTACA--TATATTTATTATGGAAGATACAAAGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTATACTATAA---------AGAATATTCTAACTGTGTCT----CAGT-CCCCTCAC-A----------------------------CCTTCATGCTGCTTAC---------TGATG----CA--A-CTGAACTG--TAGTTTT--TCTCT-Cagacttttatgtttattttt
gi|9 : TTAATTTTTGTGGAAACAAGGGGTTATTTTGTA--TTGTC---ATAC-TTCTTTGATCGTCGAT----A-TACCA-------AGTTTTCG----A-CAACATCAAAGATCGTCCGACAAaagg
blockSeqs : G G G C GCG C TT A AT G . AG . G . TTT AGGGC A A T A AATTTAAA T ATTTTAGTATG GT AAAACTGTA TGTTAG C CTT T TAGAATAATA CATG C NNNNNNNN G ATGTAA TA TT . A TACA CTATA AAAT G AAA A A ATGT TCACAGACACTGTTG G G AC C A G GAA C AGA C T G G C TC T AA CT G TTATTG TG T T CA GT T ATTTAG TA GTT AATA CC T A TT TTT TAG T T TTT AATTGGCCGC T ATACCAA TATTCAG CAA GG
blockSeqs : AGGG G G . A AATTTT G GGTATTGAATC . . . . CTA . T . C TCCTCAAA A TGTAA . . . A TACA CTATA AAAT . GA T A . TCA . A AT . T . . C GAT C T . . C TC . AA . G . A T C . . . A A TTA A GC . A . TT . T A . AATTGGCCG . ATAC . CGA AG
blockSeqs : . . . . TT G AAGAAGTAAAT . . . . CCA . T . . CCACA G CTA . . . . . CT AA . GA A A . G . G TA . A . . C GA . T . . T C . AA . G . G . A . . . A . A . A . . . TA . . . AATTGGCCG . ATA . . GA
blockSeqs : C AGTAAATT . . . . CTA . A . . CACA G CAA . . . . . CT A . GA A C . . . . TC . . . . T GG . T . . T . . AA . G . . AATTCGCTG . AT . . .
blockSeqs : . . . . . . . . . A G CAA . . . . . CT A . G . . . . . . G . G . . A . . TA . C . . TTGTC . A . .
blockSeqs : . . . . . A CAA . . . . . . A . . . . . . . G . . A . . AT . C . . A . A . .
blockSeqs : . . . CAA . . . . . . . T . . T . . . . C . . . . A . .
blockSeqs : . . . . . . . . . . A . . . . T . A .
blockSeqs : . .
blockSeqCons : ANTATNGAATN****** CANA************************** CAA******* AAAT G************** AA AATTGGCCG* A******* ********
originalCons : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGA---ATTA-AAGTA--T-AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACTACACC----AC------------------CCCTCATGCTGCTTACTGAAGGAGTTGATG----C---A-CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAA--GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATTC------------GAATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAA-GTTACGTAAAT--TCGCCG------GTTTC-GGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGAT----A-TACCA-------ACTCTTC-----A-CAACATCAAAGATCGTCCGGCAAGCA
finalCons : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGAANTATNGAATN------AAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCT----CGGT-CCCCTCACCANA--------------------------CCCTCATGCTGCTTACTGAAGGAGTTGATGCAA-------CTGAACTG--TAGTTTT--TCTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAAATGTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGATG--------------AATTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAA-GTTACGTAAAT--TCGCCG------GTTTC-GGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTAC---GTAAATTGGCCG-ATAC-TTCTTTGATCGTCGA-------TACCA-------ACTCTT--------CAACATCAAAGATCGTCCGGCAAGCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CGTCATACTTTTTTGTCATCGATACCAAGTTTTTCACTCCGACAAGCTAAGCATAGTTTTCACAAGTG
Unaligned ( gi|21 ): TCTTCTGCTTCTGCCACGTAGTAGCCACAATCATC
Alignments
lowQualScore : 1 11 222 11 22222 333333 22222 2222 222 11111 1 444444444 1111 222222222 111111 222222222 1111111 111 55555555555555555555555555 1111 2222 333 111 1111 66666666666666666 111 1111 1 11 1 11 11 1 222222 22 22222 2222 1 11 1111 111 111 11 2222222222222 1111111
lowQualScore : 5 1 1 66 000 1 22 1 88 2 66666 22 000000 55555 4444 111 22222 7 7 0 3 000000000 1 0 1 6666 8 99 000000000 444444 5 222 5 0 222222222 0 2222222 000 5 2 3 99999999999999999999999999 99999 66 66 55 4 8 8888 1 4444 000 5 000 2222 0 33333333333333333 8 8 6 22 8 6 8 444 4444 0 555 1 88 2 2 0 3 1 33 33 0 0 888888 33 55555 0000 33 0 3 33 2222 777 3 1 8888 333 2 777 4 22 2222222222222 777 4444444 777 33
lowQualScore : . . . .. ... . .. . .. . ..... .. ...... ..... .... ... ..... . . . . ......... . . . .... . .. ......... ...... . ... . . ......... . ....... ... . . . .......................... ..... .. .. .. . . .... . .... ... . ... .... . ................. . . . .. . . . ... .... . ... . .. . . . . . .. .. . . ...... .. ..... .... .. . . .. .... ... . . .... ... . ... . .. ............. ... ....... ... ..
lowQualScore : 0 0 0 55 000 0 00 0 55 5 55555 00 000000 55555 0000 555 33333 0 0 0 2 222222222 0 8 0 4444 8 22 000000000 444444 7 333 7 7 999999999 3 9999999 000 7 6 0 33333333333333333333333333 11111 99 11 55 0 9 9999 1 4444 777 7 333 1111 8 22222222222222222 0 0 4 88 0 0 0 000 8888 0 111 0 88 6 5 2 2 0 88 88 2 0 222222 88 00000 8888 55 0 2 88 0000 555 2 0 9999 888 5 777 4 22 0000000000000 888 4444444 888 22
consensus : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGAANTANAGAATTAAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCTCG----GT-CCCC---TCA-CCACACC--------------------------CTCATGCTGCTTACTGAAGGAGT---TG--ATGCAACTGAACTG--TAGTTTTT--CTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAAA-GTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGA-TTC------------GAA-TTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAAGTTACGTAAATTNGCCGGTTTCGGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTA---CGTAAATTGGCCG-ATACTTCTTT-GATCGTCG--ATACCA-------------ACTCTT---CAA-------C---ATCAAAGATCGTCCGACAAGCA
Reference ( family-1186 ) : NNNNNNNNNNNNNNNNNNTCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGANCTTTGGTCTGAAAACTGGANACTTTTTGTCGACGTTTCTTTNAAACGTTTTCTTATGCGTCNTTNNTTAANGAAATTTACAATAAATCGTGGGTTTTTTGNNGTTTTTTTCAATTTTGTTNATTTATGTTGTTGTATTTTGAAGGGTTTTTAAGTTCACTATAGGG-TTTTATGTTAA-AAACATTGTCAATTT---ACANTTAACACATTGAGAANTATNGAATNAAATAACCAACTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTAAACTAGTT---------AGAATATTCTAACTGTGTCTCG----GT-CCCC---TCA-CCANACC--------------------------CTCATGCTGCTTACTGAAGGAGT---TG--ATGCAACTGAACTG--TAGTTTTT--CTCT-CC-ATG----TGTATAATCAGCT---CTATACATTAAATGTGCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTAAC----ACCACTTAAACTCAGA-T--------------GAA-TTCA-CTGGTCA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CNTTTT--AAAAATTCAAGTTACGTAAATTCGCCGGTTTCGGCATTTTGGCANGTTAT--GCACGGGC--CCAAAAAG-CA-----TAGTC--GTA--T--ATA---ATATTTNCTTTGGCTGG-GATTGAAA--ACAAGCCA-T-NAA---TATTGTGTTTGAGCTAATNTTAATTTCTGTGGAAACGAGGGGTTA---CGTAAATTGGCCG-ATACTTCTTT-GATCGTCG--ATACCA-------------ACTCTT---CAA-------C---ATCAAAGATCGTCCGGCAAGCA
gi|1 : TCATG-TCACAACTGGAGATTTGAAGTTTTTCAGCTGGATCTTTGGTCTGAAAACTGGATATTTTTTGTCGACGTTTCTTTAAAACGTTTTTTTAT---TTATTAGTTAATGAA--TTACAATAAATCTTGGGTTTTTTGTTGTTTTTTTCAATTTTATTTATTTATGTTGTTGTATTTTGAAGGGTT---AAGTTCATTAT-----TTTTATGTTAA-AAACATTGTC----T---ACATTTAACACATTGAGAATTAAAGTAT-AAATAACCAATTTTATTACA--TATATTTATTACAGAAGATACAAGGT---------TTC------TGTATTGG-CTACTTTATCTATGGT-GTTACTGCTGCTAAATTAGTT---------AGAATATTCTAACTGTGTATCG----AT-CCTT---TCA-CTACACCGGGTACGGAGGACGTGATAGAACGTTCTCATGCTGCTTACTGTAGGA-----------------GAACTG--TAGTTTTT--CTCTCCC-ATG----TGCTTAATCAG-----TTATACATTAA--GTGCAATAGGCGTTATC-TGGAACCTTG-GTACTATTTTAAC----ACCACTTAAACTCAGACT--------------AAATTTCA-CTAGTTA-TTAAGTCT-TC---TTTGCT-GA-ACA-TTA-G-CATTTT--AAAAATTCAAGTTACGT---TTCGCCGGTTTCTGCATTTTGGCAAGTTAT--GCACGGCC--CGAAAAAG-C-------AGTC--GTA--T--GTA---ATATTTCCTTTGGCTTG-GATTGAAA--ACAAGCCA-TAAAA---TATTGTGTTTGAGCTTATGTTAATTTCTGTGGAAAAGAGGGGTTA---TTTATATCGTC---ATACTTCTTT-GATCGCCGATATACCA-------------AGTTTT---CAATGTACACC---ATCAAAGATCGTCCGACAAGCA
gi|10 : atatatttgacagaaccaAGT---TG--ATGCTACTGAACTA--TAGTTTTTTTCTCT-CC-ACA----TGTATAATCAGCT-----ATACATTAAATATGCAATTGACATAATC-TGGACCATTG-G--CCACTTTAAC----
gi|11 : TTATTTCA--CATATTTATTACGGAAGATACAGGGT---------TCC------TGTATAGG-CAACTTTA---------------GCTGCTAAACTAGNN---------NNNNNNNNNNNNNNNNNNNNNN----NN-NNNN---NNN-NNNNNCC--------------------------CTtcagattcacagga
gi|12 : -TTA-G-TCTTTTTCAAAAATTCAAGTTACGTAAATTGGCCGAT
gi|12 : agatacGTTA---CGTAAATTGGCCG-ATACTTTTTTTGATCGTCG--ATACCA-------------ACTCTT---CAA-------C---ATCAAAGactttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|13 : agatacttagtctttttcaaaaattcaaTTTTT--CTCT-CC-ACG----TGTATAATCAGCT-----ATACATTAAATATGCAGTTGACATAATC-TGGACCATTG---ACCACTTTAAC----gaca
gi|14 : -TTA-G-TCTTTTTCAAAAATTCAAGTTACGTAAATTGGCCGATtcagattcacagga
gi|14 : agatacGTTA---CGTAAATTGGCCG-ATACTTTTTT-GATCGTCG--ATACCA-------------ACTCTT---CAA-------C---ATCAAAGacttttttgatcgtcgataccaactcttcaacatcaaaggaca
gi|15 : agatacttagtctttttcaaaaattcaa-ATACTTTTTT-G-TCATCG--ATACCA-------------AGTTTT---TCA-------C--------------TCCGACAAGCgaca
gi|16 : cgtc-TTTTATGTTAATAAAC-TTGCC---TT----CATTTAACACA-TGGGAATTTTAGTATGAAATAAtaagcatagttttcacaagtg
gi|17 : gttcccttctTGAACTG--TAGTTTTT--CTCT-CC-ATA----TGAATAACCAGCTATACTATACATTA---GTGCAATAGAAGTA
gi|18 : aTACCA-------------AGTTTT---CAA-------CAACATCAAAGATCGTCCGGAAAGC
gi|19 : atacAAT---TG--ATGCAACTGAACTG--TAGTTTTT--CTCT-CTAATGTACATGTATAATCAGCT---gacacagttttctca
gi|2 : TCATGGTCACAACTGGAGATTTGAAGTTTTTCAGCTGGAGTTTTGGTCTGAAAACTGGAGACTTTTTGTCGACATTTTTTTC-AACGTTTTCTTATGCGTCCTTTTTTAAAAAAATTTACAATAAATTGTG-----TTTGAGGTTT------ATTTTGTTG----ATGTTAT----TTTTGAAGGGTTTTTAAGTTCACTATAGGGCTTTTGTTTT-A-AAACATTGTCAATTTAAAACAGTTTACACATTGAGAGGTATTGAATCAAATAACCAATTTTATTTCA--CATATTTATTACGGAAGATACAAGGT---------TTCTGTTAGTGTATAGGCCAATTTTATCTTTGGC-GGTAGTGCTACTAAACTAGTT---------AGAATATT-TAACTGTGTCTCG----GTCCCCC---TCACCCACACC--------------------------CTCATGCTGCTTACTGAATGAGTTGATG--ATGTAACTGAACTG--TAGTTTTT--CTCT-CC-A-A----TGAATAA-CAGCTATACTATACATTA---GTGCAATAGAAGTAATTGTGGGCCCTTGAAAACTACTTTAAT----ACCACTTAAACTC--------------------AA-TTCA-CAGGACA-CT--GTCTGTTGAATTTACTAGA-ATACTTAGG-CTTTTC--AAAAATTCAAGTTACGTAAATTGGCCG
gi|2 : atggGTTA---CGTAAATTGGCCGCATACTTTTTT-GATCGTCG--AGACCA-------------ACTcatacttttttgatcgtcgagaccaact
gi|20 : atggtcatggtcacaactggagatttgaagtttttcagctggagttttggtctgaaaactggagactttttgtcgacatttttttcaacgttttcttatgcgtccttttttaaaaaaatttacaataaattgtgtttgaggtttattttgttgatgttatttttgaagggtttttaagttcactatagggcttttgttttaaaacattgtcaatttaaaacagtttacacattgagaggtattgaatcaaataaccaattttatttcacatatttattacggaagatacaaggtttctgttagtgtataggccaattttatctttggcggtagtgctactaaactagttagaatatttaactgtgtctcggtccccctcacccacaccctcatgctgcttactgaatgagttgatgatgtaactgaactgtagtttttctctccaatgaataacagctatactatacattagtgcaatagaagtaattgtgggcccttgaaaactactttaataccacttaaactcaattcacaggacactgtctgttgaatttactagaatacttaggcttttcaaaaattcaa-GA-ATACTTA-GGCTTTTC--AAAAATTCAAGTTACGTAAATTGGCCG
gi|22 : taATCTATAACGGAAGATACAAGGT---------TCC------TGTATAGcata
gi|3 : TTCACTATAGGG-CTTT-TGTTGA-AAACATTGTCAATTTT--ACAGTTAACACATTTAGAAGTA---AATTAAATAACCAACTTTATTTCA--CATATTTATTGCGCAAGA------GT---------TTC------TGTATAGG-CAACTTTAT----GGT-GGTACTGTTGCTAAACTAGTA---------NNNNNNNNNNNNNNNNNNNNNN----NN-NNNN---NNN-NNNNNCC--------------------------CTCATGCTGCTTACTGAAGGAGT---TG--ATGCAACTAAACTG--CAGTTTAT--CTCT-CC-ATG----TGTGTCATCAGCT---TTATACATTAA--GTGCAACAGACCTAATC-TGGACCCTTG-GAACTTCTTTAAC----ACCACTTAAACTCAGA-TTCACAGACACTGTTGAA-TTTAGCTAGATACTTAAGTCT-TC---TATGCT-G---CA-GGA-A-CATTTT--AAAAATTCAAGTAGCGT---TTCGCTGGTTTCAGCATTTTAGCATGTTAT--GCACTGGC--CCAAAAAG-CA-----TACTTTAGTAGTT--ATAAATATATTTCCTATAGCTGG-GATTGAAA--ACAAGCCA-T-TAATAGTATTGTGTCTGTGCTAATTTTAATTGCTGTGGAAACGAGGGGT-----CATAA-------------TTCTTT-GATCGTCG--ATTCCA-------------ACTCTT---CAA-------C---ATCAAAGATCGCCCAGCAGGC
gi|4 : GTGCAAGAAACGTAATC-TGGACCCTTA-GAACTACTTTAACATGTACCACTTAAACTCAGA-T--------------GAA-TTCA-C
gi|4 : TGGTAA-TTTAGTCT-TC---TTTGCT----ACA-GGA-G-CAATTT--AAAAATTCAAGTTACAT---TTCTCCGATTTCGGCATTTTGGCACATTAT--GCATGGGC--CCAAAAAG-CA-----TAGTC--ATA--A--ATA----TATTTGCTTTAGCTGT-GATTGAAA--ATGACCCA-T-AAA---TATTGTGTTTGAGCTAATACTATTTTCTGTGAACACAAGGGGTC------------------ATACTTCTTT-GATCGTCA--ATACCAATACCATATTCAGACTCTT---CAA-------C---ATCAAAGATCGTCC--CAACCAaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaatggtaatttagtcttctttgctacaggagcaatttaaaaattcaagttacatttctccgatttcggcattttggcacattatgcatgggcccaaaaagcatagtcataaatatatttgctttagctgtgattgaaaatgacccataaatattgtgtttgagctaatactattttctgtgaacacaaggggtcatacttctttgatcgtcaataccaataccatattcagactcttcaacatcaaagatcgtcccaaccag
gi|5 : gtgcaagaaacgtaatctggacccttagaactactttaacatgtaccacttaaactcagatgaattcacaagtactgttgaatttagctagattcttctgcttttgccacatggtagccacaatcatcttgttgattattatgctacggtaaTTGTCACAGAAGATACAAGGTAAAACTGTATAG------TGTATAGG-CAACTTTATCTATTGT-GGTAGTGCTACTAAACTAGTTAGAATAATAAGAATATTCTAACTTTGTCTCA----GTCCCCC---TCA-CCACACC--------------------------CTCATGCTGCTTACTGAAGGAGT---TGATATGTAACTGAACTGTATAGTTTTT--CTCT-CC-ATA----TGTATAATCAG-----CTATACATTAGA---GCAATAGACGTAATC-TGGACCCTTG-GAACTACTTTCAC----ACCACTTAAACTCAGA-TTC------------AAA-GACA-CT-GTCT-TTAGAATT-TA---TTTA---GATACT-TTG-T-CTTTTTC-AAAAATTCAAGTTACGTTAATTCGCTGGTg
gi|5 : tgatcaacatcaaaaGTTA---CGTTAATTCGCTG-GTACTTTTTT-GATCATCA--ATACCA-------------ACTCTT---CAA-------C---ATCAAAGacttttttgatcatcaataccaactcttcaacatcaaagcac
gi|6 : tgatcaacatcaaaattgtcacagaagatacaaggtaaaactgtatagtgtataggcaactttatctattgtggtagtgctactaaactagttagaataataagaatattctaactttgtctcagtccccctcaccacaccctcatgctgcttactgaaggagttgatatgtaactgaactgtatagtttttctctccatatgtataatcagctatacattagagcaatagacgtaatctggacccttggaactactttcacaccacttaaactcagattcaaagacactgtctttagaatttatttagatactttgtctttttcaaaaattcaaACTTAACACATTGAGAAAGAAGTAAATAAATAACCAACTTTATTTCTGTTATATTTATTATGGAAGATACAAG-T---------TTC------TGTATTGG-CAACTTTATCCATGGTTGGTACTGCTGCTAAATAAGTT---------AGAATATTCTAACTGTGTCTCATGCAGT-CCCCAGCTCC-TCAAACC--------------------------CTCATGTTGCTTACTGAAGGAAT---TG--ATGCAACTGAACTG--TAGTTTTT--CTCT-CTAATGTACATGTATAATCAGCT---cac
gi|7 : gtccattgcttcattatttacaataaatcttctacagtaTTTTGGCATTT-GGCAAGTTATCAGCACGGGCGTTTAAAAAGTCATTTAGTAGTCA-GTA--TTAATA---ATATTTA--TTGACTGGTG--TGTAATTATAAGCCATT-TAA---TAC--TGTTTGAattgtagcgatggataaacgaga
gi|8 : ctttcctctgttggacacagcattttttttaatatttgtatatctttgtcgttattggtATTACA--TATATTTATTATGGAAGATACAAAGT---------TTC------TGTATAGG-CAACTTTATCTATGGT-GGTACTGCTGCTATACTATAA---------AGAATATTCTAACTGTGTCTCA----GT-CCCC---TCA-C---ACC--------------------------TTCATGCTGCTTAC------------TG--ATGCAACTGAACTG--TAGTTTTT--CTCT-Cagacttttatgtttattttt
gi|9 : TTAATTTTTGTGGAAACAAGGGGTTATTTTGT--ATTGTC---ATACTTCTTT-GATCGTCGATATACCA-------------AGTTTTCGACAA-------C---ATCAAAGATCGTCCGACAAaagg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCTTCTGCTTCTGCCACGTAGTAGCCACAATCATC