lowQualScore : 111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111 111111111111111111111111111111 11111111111
lowQualScore : 11111 888888888888888888888888888888888888888888888888888888888 111111111111111111111111111111111111111111111111 111111111111 22222 1 11 777777777777777777777777777777 2222222 2222222 22 555555555555555555555555555555 22222222 11111 11111 22222222222 111111 777777777 111111111 555555555555555555 1111111111 11111 999999999999999999999999999999999999999999999999999999999999999999 3333333333 1 11 111 11111111111 444444444444444444444 2222222222 1 1
lowQualScore : 0 6 88888 88 3 8 5 333333333333333333333333333333333333333333333333333333333 3 2 999999999999999999999999999999999999999999999999 5 3 99 0 0 777777777777 3 8 00000 6 0 99 6 8 444444444444444444444444444444 0000000 1111111 777 0 44 33 44 555555555555555555555555555555 3 99999 99999999 55 55555 00000 4 11111111111 111111 55 777777777 0 666666666 4 666666666666666666 555 7777777777 11111 0 66 6 555555555555555555555555555555555555555555555555555555555555555555 9 4 0 3333333333 2 999999 3 3 3 5 6 333 0 2 3 3 22 2 000 6666 999 55555555555 2 000000000000000000000 2 1 5555555555 1 5 4 3
lowQualScore : . . ..... .. . . . ......................................................... . . ................................................ . . .. . . ............ . . ..... . . .. . . .............................. ....... ....... ... . .. .. .. .............................. . ..... ........ .. ..... ..... . ........... ...... .. ......... . ......... . .................. ... .......... ..... . .. . .................................................................. . . . .......... . ...... . . . . . ... . . . . .. . ... .... ... ........... . ..................... . . .......... . . . .
lowQualScore : 2 5 88888 22 2 8 2 555555555555555555555555555555555555555555555555555555555 2 5 000000000000000000000000000000000000000000000000 3 5 22 8 8 222222222222 8 0 00000 0 0 88 0 0 888888888888888888888888888888 2222222 1111111 888 3 66 00 66 888888888888888888888888888888 3 33333 00000000 55 55555 00000 0 44444444444 555555 55 000000000 8 000000000 0 000000000000000000 222 4444444444 11111 1 11 7 333333333333333333333333333333333333333333333333333333333333333333 8 0 7 6666666666 3 666666 1 3 3 7 0 222 8 5 1 3 44 5 444 5555 888 22222222222 7 666666666666666666666 7 7 9999999999 7 3 0 9
consensus : GTGTGATCTANCGATGTTTTTGAGTACTGTACTTGAATATTTGTTGACTTTCAAA----A---------------T----------AGATAG-----------------N--GATAAAACTGTGGCAAANCACGT----------AATTACGATA------------A------------ATTGAAGATCAAC--CCCTGTGTTCGGCATTTAGTTAATCTNTNTAGCGTATTCAA-TC-----AAAGTATTGAGAGTTCTAAAAACCAGGCTCTTTAAATGTNCATGAAAAGAACAT--------------ATTTTGTTGAAATAATACTAACAAGTGTATTTGGAC------TAGTGTATA----A-GGTAACA---CACTTTACTTTAGTC--CGTTTCTACACGGTGAT--CA-C----A---------------N-T-----TGC-ACTG----TA-T------TAA--CCGT-----TACA-----T-AAAAGTGC-A----AN---TGCAA------CTTTG--TACACATATG-AATAAA---------GTATAAAAT-ATAAACTAA-----ATG-TT-TA----T-T-TCATTACC--------TATA-----TCTTTACA--TNTCGT----A---TCA---ACA-C--TTTTAA---ATAT------A---G------T---A---CTT---TTTTAAGGCAGGGGT-CATTTTTCTACGNGGG--TCATTTTTCTTCAT------GT-ATA-A-CACGCAGAAAA-C-TGACCCC-TGGGTCTTTTTTCTTC-AAAATA-ATCCA--NTT---TTTCTTC--AGCTG----------GGGGGTCATTTT-TC--TA-----CGTA--------GA-AAAATGACCCC---CGG----TCGTTATTCTACGGGGGTCATTATTCTTCTTTA
Reference ( gi|2 ) : GTGTGATCTAGCGATGTTTTTGAGTACTATACTTGACTATTTGTTGACTTTCACA----A---------------T----------AGAT-------------------T--GATAAAACTGTGGCAAAGCACGT----------GGTTATAATC------------A------------ATTAAAAATCAAC--CCCTGTGTTCGGCATTTAGTTGATCTGTCTGGCGTATTCAA-TC-----AAAGTATTGAAAGTTCTAAAACCCACACTTTTTAAATGTTCATGAAAAGAACAT--------------AT--------------ACTAACAAGTGTATTTGGAC------TAGTGTATA----A-AGTAACA---CACTCTACTTTAGTC--CGTTTCTTTACGGTGAT--CA-C----A---------------T-C-----TGC-ACTA----TA-A------TAA--CCGT-----TACA-----T-AAAAGTGC-G----AT---TGCAA------CTTTG--TAC---------ATAAA---------GTATAAAAT-ATAAACTAA-----ATG-TT-T-----T-T-TCATTATC--------TATA-----TCTTTACA--TCTCGT----A---TCA---ACA-C--TTTTAA---ATA-------A---A------T---A---CTT---CTTTAAGGCAGGAGT-CATTTTTCTACGTGGG--TTATTTTTCTTCAT------GT-ATA-A-CAAGCAAAAAA-C-TGACTCC-TGGGTCTTTTTTCTTC-AAAATC-ATCCA--ATT---CTTCTTT--AGCTGGGGA-GGGGGGGGGGTCATTTT-TC--T------CGTC--------GA-AAAATGACCCC---TAA----TCATTATTCTACGGGGTTCATGATTTTTCTTTA
gi|3 : GTGTCATCTAACGATGTTTTTGCGTACTGTACTTGACTATTTGTTGACTTTTACA----A---------------T----------AGATAG-----------------TTAGCTAAAACAGTGGTAAAGCACGT----------AATCATAATCAATACTACGATAA------------ATTGAAGATCAAC--CTCTGTGTTCGGCATTTACTTAATCTTTTTAGTGTATTCAA-TC-----AAAGTATTGAGAGTTCTAAAAACCAGACTCTTCAAATGTTCATGAAAAGAACATATTTTGTTGAAATGAT--------------ACTAACCAGTGTAT---GA--------GGTACAT--------GTAACA---CACTTTACTCTAGTG--CGTTCCTACACGGTGA------------------------------------------A----TA--------------CG------------------AAAGTGC-A----AA---TGCAA------CTTTG--TACACATAGA--ATAAA---------GTATAGAAT-ATAAACTAA-----AT--TA-A-----T-G-TTATTAAA--------TAAA-----AGTTT-----TCT---------------------T--TTTTAAGGCAGG-------A---G------T-------CTT---TTTTTCTACGGGAGT-CATTTTCCTCCATG-----------------T------AT-ATA-A-CACGCAGAAAA-C-TGACCCC-TGGGTCTTTTTTCTTC-AAAATA-ATCCA--GTT---TTTCTTC--AGCT-----------TGGGGTAATTTT-TT--T------CTTTCTACGTAAGA-AAAATTACCCCACGCGG----TCGTTATTCCACGGTGGTCATTATTCTTCTTTA
gi|7 : GTGTGATATATTGATGTT---AAGTACTGTACTTGAATATTTGTTGACTTTCNNN----NNNNNNNNNNNNNNNNT----------AGAT-------------------A--GATATAACTGTGGCAAATCA-----------------------------------A------------ATTTCAGATCAACGGCCC-GTGTTCA-CATTTAA-----CCGT------TACTTAG-TCTCTGTAGCGTATTGGGAACTCTAAAAACCAGGCTCTTTATATGTGCATGAAAAGTACAT--------------ATTTTGTTGAAATAATACTAACAAGTATATTTGGAT------TAGTGTATA----A-GGTAACA---CAATTTACTTTAGTC--CGTTTCTACACAGTGAT--GA------G---------------T-------TGT-ATTG----TA-T------TAA--CCGT-----TACA-----T-AAAAGTGC-A----AC---TGCAA------CTTTG--TACACATTTGGAATAAA---------GTAT---ATCATAAACT
gi|12 : GTGTGATCTATTGATGTTT--GAGTACTTTACTTGAATATTTGCTGACTTTCAAATTAGA---------------T----------AGAT-------------------G--GATAAAACTTTGGCAAATCACAT----------AATTATAATA------------AAAACTACGATAGATTGAAAATCAAT--CCg
gi|1 : TGTAACCTAGCGGTGTTTTTG----TTA-ACT-GAATATTTGTTGACTTTCAAA----A---------------TAGATACATGTAGATAGTGCTCTATTGTACCCAGT--GAGAAAACTG--GCAAAGCACATTTAATATCAAAACTACGATA------------A------------ATTACAGATCAAC--CCCTATGTTCGGCATTTAGTTAACCTCTGTAGCGTATTCAA-TC-----AAAGTAATGAGAGTCCTAATAACTAGGGTCTTTAAATGTACACAAAAAGAACAT--------------ATTTTGCTGAAATAAAACTAACATGTGTATTTGGAC------TAGTGTATA----A-GGTAACA---CATTCGACTTTGGTC--CGTTTCTACACGATGAT--TACC----A---------------T-------TGC-ACTG----TA-
gi|14 : TACGATC------------A------------ACTGAAGATCAAC--CCCTGTGTTCGGCATTTAGTTAATCTCTGTAGCATA--CAC-TC-----AAAGTATTGAGAGTTCTAAATCCAAC-CTCCTTAAATGTACATGAAAAGAAcactccactttagtttgtttctacacagttatcagaattgcactgtattaaccgtgctgtttagaagtgcaagtgcaattttgcacacatatggaataaagtataaaatataaactaaatgctgtatgtatttcataacctttatctttacatgtcgtattgatcaacacttttttaaaaacagcattttacctttttaaggcaggggtaatttttcttcatgtataacacgcaggggggtcatttcccggtcattattctacggaggtcattattcttcttta
gi|4 : aatcaagacATA------------A------------GTCGAAGACCAGC--CCTTGCGTCTGGCGCTTAGTTAAT--ATCTGCAGCATTGAAATC-----AAATTATTTAGAGTTCGAAAAACCAGGCTCTTTAAATGTATATGAAATGA-------------------T--------------ACTAACAAGCGAATTTTAAC------TAGTGTATA----T-GGTAACA---CACTTTACAAAAGTC--CGTTTCTACACAATGAT--CA-C----A---------------G-A-----TGC-ATTAGCTTTA-T------CAA--CTGT-----TACA-----T-AAACGTGC-A----AT---TGCAA------CATT------------------AA---------GTGTAAAAT-ATAAACTAA-----ATG-CT-A-----T-T-TCGTTACC--------AATA-----TCTTTACA--TCTCGT----A---TCA---ACA-C--TTTTGA---ATAT------C---ATTT---T---A---CTT----TTTAAGGCAGGAGT-TAT-----TATGTA---------------CAT------G---TA-A-CATGCAGAAAA-CGTG-CCCC-TAAGTCTCCTTTCTTA-AAAATTAATTCA--GTT---CTTCTTC--AGGAGGGGGTGGGGGTGGGGGCATTTT-TCGAT------GGT---------GG-GGAATGACCCC---CGG----TCATTATTCTATGGGAGTCATCATTTTTTTTTt
gi|10 : tgaaaacaaggTTAAAATGTTCATCAAAAGAACAT--------------ATTTGGTTGAAATAATACTGACAGGTGTATTTGGACTAACGTTAGTGTACAAGCTA-GGTA--A---CACTTTGCTTTAGTCCGCGTTCCTACACGGTGAT--CA-C----A---------------G-T-----TGC-ATTG----Tt
gi|5 : ACAAGTGTATTTGGAC------TATTGTACA----A-GGTAACC---TGCTCTTCTATATTC--TGTTTCTACAGAGTTAT--CA-A----A---------------A-C-----TGC-ACTG----TGCACTCTGTTGAGTCCGTTTCTATACAGTCATC-ACAACTGC-ACTGTATTAGTGCAAACACATCTTTG--TACACATATGGAATGAA---------GTATAAAAT-GTAAACTAA-----ATG-TTATATGTAT-T-TCATTACCTACACATGTATA-----TCTTTACA--TATCGTGTTGG---TCA---ACACC--TTTTTC---ATATTAT---A---G------C---A---TTTTACCTGTTAGACGGGGAT-CATTTTTCTACG-GAA--ATCTTTTTCTTCAT------GT-GTA-A-CGCGCAGAAAA-C-TGACCTT-TAGCTCTTATTTCTTC-AAA------CCA--ATT---TTGCTTC--AGTT----------GGAAGGTCATTT------------------------------AATGACCTC---TGG----TCATTATTCTATGGGGGTCACTACTCTTCTTT
gi|6 : ATA----ATACTAACAAAGTACTTTATTTTAGTC--CGTT-CTACACGATGAT--CA-C----AGGTTCTACATGATGAT-CACAGGTGC-ACTG----TA-T------TAA--CCAT-----TTGA-----T-AAAAGTAC-A----AT---GGCAA------CTTTG--TGC---------ACAAATGGCAAAACGTATAAAAT-ATAAACTAA-----AT---------------------CC--------TATT-----TCGTCACA--T---------A---TC------------TGTAA---ATA-------A---A------C---ATGACTT---TTTTAAGGCATGGGG-AATTTTTCTATGAGGG--TCATTTTTTTT-AT------GT-ATA-A-CATGCAGAAAA-C-ATATCCC-TGGTTATTTATTTTTC-AAAATA-ATTCATTTTT---TTTCTTTG-AGTT---------------GTCATTTT-TC--GA-----CGCA--------GA-AGAATTACTTC---CAG----TCATTATTCTATGGGG-TCATTGTTTTTCTTT
gi|1 : ttgttgaaA---CACTCCACTTTAGTT--TGTTTCTACACAGTTAT--CA-G----A---------------A-T-----TGC-ACTG----TA-T------TAA--CCGTGC---TGTT-----T-AGAAGTGC-A----AG---TGCAA------TTTTG--CACACATATGGAATAAA---------GTATAAAAT-ATAAACTAA-----ATG-CTGTATGTAT-T-TCATAACC--------TTTA-----TCTTTACA--TGTCGTATTGA---TCA---ACA-CTTTTTTAA---AAA-------C---AGCATTTT---A---CCT---TTTTAAGGCAGGGGT-AATTT-------------------TTCTTCAT------GT-ATA-A-CACGCAGGGGG-G-TCATTTC-CCGGTCATTATTCTACGGAGGTC-ATT----ATT---CTTCTTT--A
gi|25 : tgtaacctagcggtgtttttgttaactgaatatttgttgactttcaaaatagatacatgtagatagtgctctattgtacccagtgagaaaactggcaaagcacatttaatatcaaaactacgataaattacagatcaacccctatgttcggcatttagttaacctctgtagcgtattcaatcaaagtaatgagagtcctaataactagggtctttaaatgtacacaaaaagaacatattttgctgaaataaaactaacatgtgtatttggactagtgtataaggtaacacattcgactttggtccgtttctacacgatgattaccattgcactgtA---CACTTTACTTTAGCC--CGTTTCTACACGGT
gi|19 : tcacaattgcactgtCTATTATAGTT--CGTTTCTACACGGTGAT--CA-C----A---------------A-T-----TGC-ACTG----T----------------GT-----TATA-----T-GATAGTGC-G----AT---TGCAA------TTTTG--TAC---------A
gi|8 : taatgaataataTC--CGTTTCTACACA-TAATTTCA-CTATAA---------------T-T-----TGCCACTG----TA-T------AAA--CCGT-----TACA-----TAAAAAGTGC-A----A----TGCAA------ATTTGCACAC---------ATATA---------TTATAAAAT-A-AAACTAATTGCTATA-TG-TA----T-T-TCATCCAC--------TATA-----T-TATACA--TATCGT----AATGTAATGTACACC--TTTTTA---ATA-------A---A------TAGCA---TTTTACTTTTAAGGCAGG-GTGCA-TGTTCT-CATGGG---CACTTTTCTTCATGTACAGGT-ATA-ATCACGCAGAAAATC-T---CCC-TGGGTTCTTTTTC--------------------T---CTTTTTTCAGGCT------------GGCGTCATTTTATC--TA-----CGTA--------AATAAAAT-ATCCC---CAG----TCGTTATT
gi|9 : TC--CGTTTCTACACAGTAAT--CA-C----AA--------------TAT-----TGC-ACTG----TA-T------TAA--CCGT-----TACA-----T-AAAAGTGCAA----AA---TGCAA------C-TTG--TACACATATGAAATAAA---------GTATGAAAT-ATAAACTAATTGCTATA-TG-TA----T-T-TCATTACT--------GATA-----TCATTACA--TATCATATTGA---TCA---ACT-C--TTTT
gi|17 : aAT--CA-C----A---------------A-C-----TGC-ACTA----TA-A------TAA--CCGT-----TACA-----T-AAAAGTGC-A----AC---TGC-A------TTTTG--TGC---------AC-------------T------T-ATGG--TAA-----ATGTTT-T-----T-T-TCATTACC--------TATA-----TCTGTACA--TCTCGT----A---T
gi|15 : at---------GTATAAAAT-ATAAACTAA-----ATG-CT-G-----TATATCATTATC--------TTTAGTGATTTTTTACAGATCTTATTG--A---TCA---ATA-G--ATTT--------------------------T---A---CTC---TTTTAAGGCAGGGGT-CATTTTTCTAC
gi|20 : CGT----A---TCA---GCA-C--CTTTAA---ACATCATTTTACGTG------T---A---CTT----TTTAAGGCAGG-GT-CAATTTTCTACACGGGAGTCATTTTTCTTCAT------GT-A
gi|24 : TTAAGGCAAGGGT-CATTTTTCTACGGGGG--TCAGTTTTCTTTCT------GT-ATA-A-
gi|21 : CAGGGGT-AATTTTTCTACGAGGG--T--------------------------------CAGAAAA-C-TTACCCC-TGGGTCTTTTTTCTTC-AAAATA-ATCTA--TTT---TTTCTTC--AGTTG
gi|3 : aGGG--TCAGTTTTCTGCGT------GTTATATA-CATGGAGGAAA-A-TGACTCC-CG
gi|11 : gtgtcatctaacgatgtttttgcgtactgtacttgactatttgttgacttttacaatagatagttagctaaaacagtggtaaagcacgtaatcataatcaatactacgataaattgaagatcaacctctgtgttcggcatttacttaatctttttagtgtattcaatcaaagtattgagagttctaaaaaccagactcttcaaatgttcatgaaaagaacatattttgttgaaatgatactaaccagtgtatgaggtacatgtaacacactttactctagtgcgttcctacacggtgaatacgaaagtgcaaatgcaactttgtacacatagaataaagtatagaatataaactaaattaatgttattaaataaaagttttcttttttaaggcaggagtctttttttctaG--TAATTTTTCTTC--------------------GTAGAAAA-A-TGACCGC-TTGGTCTTTTTTCTTC-AAAATT-ATCCA--CTT---TTTCTTC--AGTT-------GGAGGTGTGTAATTTG-TCT-T------CGTA--------GA-AAAAACACCC---------------------ACGGGGTTAATTAATCTTCTTTActgggtcttttttcttcaaaataatccagtttttcttcagcttggggtaatttttttctttctacgtaagaaaaattaccccacgcggtcgttattccacggtggtcattattcttcttta
gi|16 : tCTTCAT------GT-ATA-A-CATGCAGAAAA-C-TGACTCA-TGGGTATTTATTTTTC-AAAACA-ATCCA--TTT---TTTCTTC--AGCT-----------GGGGGTCATTAT-TC--T------
gi|22 : T-ATA-A-CACGCAGAAAA-C-TGACCCC-TGGGCCTTTTTTCTTC-AATATA-AATCA--AGC---TTTCTTC--AGCTGacgggagtcattattct
gi|13 : GCAGAAAA-C-TGACCCC-TGGGTCTTTTTGCTTC-AAAATA-AACCA--GTT---TTTCTTC--AGCT-----------GTGTGTCATTTT-TC--TA-----CGTA--------AA-AAAATTACTCC---CAG----TCGTTATTCTACGGGGGTCATTATTCTTCtagt
gi|11 : acAA-T-TAACCCCGTGGGTGTTTTTTCTAC-GAAGAC-A---A--ATTACACACCTCC--AACTGAAGA--AAAAGTGGATAATTTT-------------GAA--------GA-AAAAAGACC------AAGCGGTCATTTTTCTACG
gi|18 : tgtaatttttctt-ATCCA--TTT---TTTCTTC--AACTGGAG----------GGCCATTTT-TC--TA-----CGTC--------GA-AAAATGACCCC---CGG----TCATTATTTTACGGGGGTCATAATTCTTaatcttcttta
gi|4 : taGGGGGTCATTCC-CCA-C------CATC--------GA-AAAATGCCCCC---tac
gi|6 : tgaaaacaaggataagtcgaagaccagcccttgcgtctggcgcttagttaatatctgcagcattgaaatcaaattatttagagttcgaaaaaccaggctctttaaatgtatatgaaatgatactaacaagcgaattttaactagtgtatatggtaacacactttacaaaagtccgtttctacacaatgatcacagatgcattagctttatcaactgttacataaacgtgcaattgcaacattaagtgtaaaatataaactaaatgctatttcgttaccaatatctttacatctcgtatcaacacttttgaatatcattttactttttaaggcaggagttattatgtacatgtaacatgcagaaaacgtgcccctaagtctcctttcttaaaaattaattcagttcttcttcaggagggggtgggggtGGAAGTAATTCT-TC--TG-----CGTC--------GA-AAAATGACggtcattattctatgggagtcatcatttttttttt
gi|13 : ttgttgaaataatactaacaaagtactttattttagtccgttctacacgatgatcacaggttctacatgatgatcacaggtgcactgtattaaccatttgataaaagtacaatggcaactttgtgcacaaatggcaaaacgtataaaatataaactaaatcctatttcgtcacatatctgtaaataaacatgacttttttaaggcatggggaatttttctatgagggtcattttttttatgtataacatgcagaaaacatatccctggttatttatttttcaaaataattcattttttttctttgagttGGGAGTAATTTT-TT--TA-----CGTA--------GA-AAAATGACagtcattattctatggggtcattgtttttcttt
gi|18 : acgcagaaaactgacccctgggtctttttgcttcaaaataaaccagtttttcttcagctgtgtGGGGGTCATTTT-TC--GA-----CGTA--------GA-AAAATGGCCCagtcgttattctacgggggtcattattcttc
gi|21 : taatccattttttcttcaactggaGGGGTAAGTTT-TC--TGACCCTCGTA--------GA-AAAATTACCCC---Tggtcattattttacgggggtcataattctttac
gi|23 : acA-AAATTGACCCC---CGT----TT-TTATTTTACAGGGATCATTAGTATTCTTTAtgggtcttttttcttcaaaataatctattttttcttcagttg
gi|1 : ctCC---CGG----TCATTATTCTACGGAGGTCATTATTCTTCTTTAcag
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|26 ): CCCGGTCGATATTCTACGGGGGCCAGTATTCTTCTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 000000000000000000000000000000000000000000000000000000000 8888888888888888888888888888 2222222 1111111 111111 2222222222222222222 1111111 11111 1111111 111111 222222222 222222222222222 11111111 11111 55555555555555555555555555555555555555555555555555 2222222222222222222222222 111111 11111111111
lowQualScore : 1 777 5 8 0 2 888888888888888888888888888888888888888888888888888888888 0 1 9999999999999999999999999999 1 77 1111111 1 1 2 6 7 1 0 5555555 111111 0 44 3333333333333333333 44 777777777 3 6666 0000000 0 55 44444 99999 3 3 1111111 4 000000 333333333 3 555555555555555 44444444 00000 0 3 22222222222222222222222222222222222222222222222222 66 777 777 1 2 88888888 1 999999 3 0 3 3 3 2 666 555 3333333333333333333333333 666 000000 3 77777777777 44 3 5 3 555 4
lowQualScore : . ... . . . . ......................................................... . . ............................ . .. ....... . . . . . . . ....... ...... . .. ................... .. ......... . .... ....... . .. ..... ..... . . ....... . ...... ......... . ............... ........ ..... . . .................................................. .. ... ... . . ........ . ...... . . . . . . ... ... ......................... ... ...... . ........... .. . . . ... .
lowQualScore : 0 000 6 2 6 6 444444444444444444444444444444444444444444444444444444444 8 0 7777777777777777777777777777 3 99 7777777 0 0 5 6 3 3 1 8888888 000000 1 22 8888888888888888888 22 777777777 1 5555 0000000 1 00 11111 11111 6 6 8888888 5 555555 111111111 6 999999999999999 55555555 00000 9 8 00000000000000000000000000000000000000000000000000 11 000 000 3 3 66666666 1 666666 3 2 6 6 1 5 333 444 7777777777777777777777777 444 555555 6 33333333333 88 6 9 3 888 4
consensus : GTGTGATCTANCGATGTTTTTGAGTACTGTACTTGAATATTTGTTGACTTTCANAA---------------TA----------GATAG--T--G----AT-------------AAAACTGTGGCAAANCACGT----------AAT------------TACGATAAATTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGGCTCTTTAAATGTNCATGAAAAGAACATATTTTGTTGAAATAATACTAACAAGTGTATTTGGAC------TAGTGTATA----AGGTAACACACTTTACTTTAGTC--CGTT-------------------TCTACACGGTGAT--CAC----AAT--TGC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ANTGCAA------CTTTGTACACATAT-G--AATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----TATTTCATTACC--------TATA-----TCTTTACATNTCGT----A---TCA---A-CAC---TTTTA-A-ATAT------A---G-----TA--CTT---T---TTTAAGGCAGGGGTCATTTTTCTACGNGGG--TCATTTTTCTTCAT------GTATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--NTTT---TTCTTCA------G-CT---------GG----GGG---GTCATT------TT-TCT-----------ACGT-AGA-AAAATGACC-CC---CGGTCGTTATTCTACGGGGGTCATTATTCTTCTTTA
Reference ( family-1165 ) : GTGTGATCTANCGATGTTTTTGAGTACTGTACTTGAATATTTGTTGACTTTCAAAA---------------TA----------GATAG--N--G----AT-------------AAAACTGTGGCAAANCACGT----------AAT------------TACGATAAATTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTNTNTAGCGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGGCTCTTTAAATGTNCATGAAAAGAACATATTTTGTTGAAATAATACTAACAAGTGTATTTGGAC------TAGTGTATA----AGGTAACACACTTTACTTTAGTC--CGTT-------------------TCTACACGGTGAT--CAC----ANT--TGC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ANTGCAA------CTTTGTACACATAT-G--AATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----TATTTCATTACC--------TATA-----TCTTTACATNTCGT----A---TCA---A-CAC---TTTTA-A-ATAT------A---G-----TA--CTT---T---TTTAAGGCAGGGGTCATTTTTCTACGNGGG--TCATTTTTCTTCAT------GTATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--NTTT---TTCTTCA------G-CT---------GG----GGG---GTCATT------TT-TCT-----------ACGT-AGA-AAAATGACC-CC---CGGTCGTTATTCTACGGGGGTCATTATTCTTCTTTA
gi|1 : TGTAACCTAGCGGTGTTTTTG-----T-TAACTGAATATTTGTTGACTTTCAAAA---------------TAGATACATGTAGATAG--T--GCTCTATTGTACCCAGTGAGAAAACTG--GCAAAGCACATTTAATATCAAAAC------------TACGATAAATTACAGATCAAC--CCCTATGTTCGGCATTTAG-------TTAACCTCTGTAGCGTATTCAATCAAAGTAATGAGAGTCCTAATAACTAGGGTCTTTAAATGTACACAAAAAGAACATATTTTGCTGAAATAAAACTAACATGTGTATTTGGAC------TAGTGTATA----AGGTAACACATTCGACTTTGGTC--CGTT-------------------TCTACACGATGAT--TAC----CAT--TGC-A----CTG-------TA
gi|1 : ACACTCCACTTTAGTT--TGTT-------------------TCTACACAGTTAT--CAG----AAT--TGC-A----CTG-------TATTAA--CCGTGC---TGTT-----T-AGAAGTGC-A-------AGTGCAA------TTTTGCACACATATGG--AATAAAGTATAAAAT-ATAAACTAA-----ATGCTGTATGTATTTCATAACC--------TTTA-----TCTTTACATGTCGTATTGA---TCA---A-CACTT-TTTTA-A-AAAC------A---GCATTTTA--CCT---T---TTTAAGGCAGGGGT-A------------------ATTTTTCTTCAT------GTATAA-CACGCAGcactccactttagtttgtttctacacagttatcagaattgcactgtattaaccgtgctgtttagaagtgcaagtgcaattttgcacacatatggaataaagtataaaatataaactaaatgctgtatgtatttcataacctttatctttacatgtcgtattgatcaacacttttttaaaaacagcattttacctttttaaggcaggggtaatttttcttcatgtataacacgcaggggggtcatttcccggtcattattctacggaggtcattattcttcttta
gi|1 : tgtaacctagcggtgtttttgttaactgaatatttgttgactttcaaaatagatacatgtagatagtgctctattgtacccagtgagaaaactggcaaagcacatttaatatcaaaactacgataaattacagatcaacccctatgttcggcatttagttaacctctgtagcgtattcaatcaaagtaatgagagtcctaataactagggtctttaaatgtacacaaaaagaacatattttgctgaaataaaactaacatgtgtatttggactagtgtataaggtaacacattcgactttggtccgtttctacacgatgattaccattgcactgtTTTTTTAAAAA-CAG--CA--TTTTACCTTTTTAA------GGC-----------A----GGG---GTAATT------TT-TCTTCATGTATAACACGC-AGG-GGGGTCATTTCC---CGGTCATTATTCTACGGAGGTCATTATTCTTCTTTAgggggtcatttcccggtcattattctacggaggtcattattcttcttta
gi|10 : tgtaacctagcggtgtttttgttaactgaatatttgttgactttcaaaatagatacatgtagatagtgctctattgtacccagtgagaaaactggcaaagcacatttaatatcaaaactacgataaattacagatcaacccctatgttcggcatttagttaacctctgtagcgtattcaatcaaagtaatgagagtcctaataactagggtctttaaatgtacacaaaaagaacatattttgctgaaataaaactaacatgtgtatttggactagtgtataaggtaacacattcgactttggtccgtttctacacgatgattaccattgcactgtacactccactttagtttgtttctacacagttatcagaattgcactgtattaaccgtgctgtttagaagtgcaagtgcaattttgcacacatatggaataaagtataaaatataaactaaatgctgtatgtatttcataacctttatctttacatgtcgtattgatcaacacTTAAAATGTTCATCAAAAGAACATATTTGGTTGAAATAATACTGACAGGTGTATTTGGACTAACGTTAGTGTACAAGCTAGGTA--ACACTTTGCTTTAGTCCGCGTT-------------------CCTACACGGTGAT--CAC----AGT--TGC-A----TTG-------T
gi|11 : G--TAATTTTTCTTC------------------GTAGAAAA-A-TGACCGCTTGGTCTTTTTTCTTCAAAA-TTATCCA--CTTT---TTCTTCA------G-TT---------GG----AGGTGTGTAATT------TG-TCT-----------TCGT-AGA-AAAA--ACA-CC---C------------ACGGGGTTAATTAATCTTCTTTA
gi|12 : tGTGTGATCTATTGATGTTT--GAGTACTTTACTTGAATATTTGCTGACTTTCAAAT---------------TA----------GATAGATG--G----AT-------------AAAACTTTGGCAAATCACAT----------AATTATAATAAAAACTACGATAGATTGAAAATCAAT--CC
gi|13 : ACGCAGAAAA-C-TGACCCCTGGGTCTTTTTGCTTCAAAA-TAAACCA--GTTT---TTCTTCA------G-CT---------GT----GTG----TCATT------TT-TCT-----------ACGT-AAA-AAAATTACT-CC---CAGTCGTTATTCTACGGGGGTCATTATTCTTC
gi|14 : AATCAAG------------AC------------TACGATCAACTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCATA--CACTCAAAGTATTGAGAGTTCT-AAATCCAACCTCCTTAAATGTACATGAAAAGAA
gi|15 : GTATAAAAT-ATAAACTAA-----ATGCTG----TATATCATTATC--------TTTAGTGATTTTTTACAGATCTT----A---TTG---ATCAA---T---A-G-ATTT----------------TA--CTC---T---TTTAAGGCAGGGGTCATTTTTCTACt
gi|16 : CTTCAT------GTATAA-CATGCAGAAAA-C-TGACTCATGGGTATTTATTTTTCAAAA-CAATCCA--TTTT---TTCTTCA------G-CT----------G----GGG---GTCATT------AT-TCT-----------ACG
gi|16 : TT---T---CTTCAGCTGGGGGTCATTATTCTACGGGAG--TCATTATTCTggagtcattattct
gi|16 : cttcatgtataacatgcagaaaactgactcatgggtatttatttttcaaaacaatccatttGGTCATTATTCTACGGGAGTCATTATTCT
gi|17 : cttcatgtataacatgcagaaaactgactcatgggtatttatttttcaaaacaatccattttttcttcagctgggAT--CAC----AAC--TGC-A----CTA-------TAATAA--CCGT-----TACA-----T-AAAAGTGC-A-------ACTGC-A------TTTTGTGCACTTAT-G--G---------------------TAA-----ATGTT-----TTTTTCATTACC--------TATA-----TCTGTACATCTCGT----A---T
gi|18 : at-TAATCCA--TTTT---TTCTTCA------A-CT---------GG----AGG---GCCATT------TT-TCT-----------ACGT-CGA-AAAATGACC-CC---CGGTCATTATTTTACGGGGGTCATAATTCTT
gi|19 : TATTATAGTT--CGTT-------------------TCTACACGGTGAT--CAC----AAT--TGC-A----CTG-------T---------GT-----TATA-----T-GATAGTGC-G-------ATTGCAA------TTTTGTACAtac
gi|2 : taatgaataatacGTGTGATCTAGCGATGTTTTTGAGTACTATACTTGACTATTTGTTGACTTTCACAA---------------TA----------GAT----T--G----AT-------------AAAACTGTGGCAAAGCACGT----------GGT------------TATAATCAATTAAAAATCAAC--CCCTGTGTTCGGCATTTAG-------TTGATCTGTCTGGCGTATTCAATCAAAGTATTGAAAGTTCTAAAACCCACACTTTTTAAATGTTCATGAAAAGAACATAT--------------ACTAACAAGTGTATTTGGAC------TAGTGTATA----AAGTAACACACTCTACTTTAGTC--CGTT-------------------TCTTTACGGTGAT--CAC----ATC--TGC-A----CTA-------TAATAA--CCGT-----TACA-----T-AAAAGTGC-G-------ATTGCAA------CTTTGTAC-----------ATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----T-TTTCATTATC--------TATA-----TCTTTACATCTCGT----A---TCA---A-CAC---TTTTA-A-ATA-------A---A-----TA--CTT---C---TTTAAGGCAGGAGTCATTTTTCTACGTGGG--TTATTTTTCTTCAT------GTATAA-CAAGCAAAAAA-C-TGACTCCTGGGTCTTTTTTCTTCAAAA-TCATCCA--ATTC---TTCTTTA------G-CTGGGGAGGGGGG----GGG---GTCATT------TT-TCT------------CGT-CGA-AAAATGACC-CC---TAATCATTATTCTACGGGGTTCATGATTTTTCTTTA
gi|20 : CGT----A---TCA---G-CAC---CTTTA-A-ACATCATTTTACGTG-----TA--CTT---T---TT-AAGGCAGGG-TCAATTTTCTACACGGGAGTCATTTTTCTTCAT------GTA
gi|21 : CAGGGGTAATTTTTCTACGAGGG--TCA------------------------------GAAAA-C-TTACCCCTGGGTCTTTTTTCTTCAAAA-TAATCTA--TTTT---TTCTTCA------G-TT---------G
gi|22 : aTATAA-CACGCAGAAAA-C-TGACCCCTGGGCCTTTTTTCTTCAATA-TAAATCA--AGCT---TTCTTCA------G-CT---------G
gi|23 : A-AAATTGACC-CC---CGTTT-TTATTTTACAGGGATCATTAGTATTCTTTAtagt
gi|24 : ctTTAAGGCAAGGGTCATTTTTCTACGGGGG--TCAGTTTTCTTTCT------GTATAA-cag
gi|25 : ACACTTTACTTTAGCC--CGTT-------------------TCTACACGGT
gi|26 : tcacaattgcactgt-CC---CGGTCGATATTCTACGGGGGCCAGTATTCTTCTT
gi|3 : GTGTCATCTAACGATGTTTTTGCGTACTGTACTTGACTATTTGTTGACTTTTACAA---------------TA----------GATAG--TTAG----CT-------------AAAACAGTGGTAAAGCACGT----------AATCATAATCAATACTACGATAAATTGAAGATCAAC--CTCTGTGTTCGGCATTTAC-------TTAATCTTTTTAGTGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGACTCTTCAAATGTTCATGAAAAGAACATATTTTGTTGAAATGATACTAACCAGTGTAT---GA--------GGTACAT-------GTAACACACTTTACTCTAGTG--CGTT-------------------CCTACACGGTGA----------------------------------------------------ATA-----C-GAAAGTGC-A-------AATGCAA------CTTTGTACACATA--G--AATAAAGTATAGAAT-ATAAACTAA-----A--TT-----AATGTTATTAAA--------TAAA-----AGTTT-----TCTT----------------------TTTTA-A-G-GC------A---G-----GAGTCTT---T---TTTTCTACGGGAGTCATTTTCCTCCATG-----------------T------ATATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--GTTT---TTCTTCA------G-CT----------T----GGG---GTAATTTTTTTCTT-TCT-----------ACGTAAGA-AAAATTACC-CCACGCGGTCGTTATTCCACGGTGGTCATTATTCTTCTTTA
gi|4 : GATAAGTCGAAGACCAGC--CCTTGCGTCTGGCGCTTAG-------TTAATATCTGCAGCAT-TGAAATCAAATTATTTAGAGTTCGAAAAACCAGGCTCTTTAAATGT-------------ATAT------GAAATGATACTAACAAGCGAATTTTAAC------TAGTGTATA----TGGTAACACACTTTACAAAAGTC--CGTT-------------------TCTACACAATGAT--CAC----AGA--TGC-ATTAGCTT-------TATCAA--CTGT-----TACA-----T-AAACGTGC-A-------ATTGCAA------CATT------------------AAGTGTAAAAT-ATAAACTAA-----ATGCT------ATTTCGTTACC--------AATA-----TCTTTACATCTCGT----A---TCA---A-CAC---TTTTG-A-ATAT------C---ATTT--TA--C-T---T---TTTAAGGCAGGAGTTAT-----TATGTA---------------CAT------G--TAA-CATGCAGAAAA-CGTG-CCCCTAAGTCTCCTTTCTTAAAAATTAATTCA--GTTC---TTCTTCAGGAGGGG-GT---------GGGGGTGGG---GGCATT------TT-TCG-----------ATGG-TGG-GGAATGACC-CC---CGGTCATTATTCTATGGGAGTCATCATTTTTTTTT
gi|5 : tgaaaacaagACAAGTGTATTTGGAC------TATTGTACA----AGGTAACCTGCTCTTCTATATTC--TGTT-------------------TCTACAGAGTTAT--CAA----AAC--TGC-A----CTGTGCACTCTGTTGAGTCCGTTTCTATACAGTCATC-ACAACTGC-ACTGTATTAGTGCAAACACATCTTTGTACACATATGG--AATGAAGTATAAAAT-GTAAACTAA-----ATGTTATATGTATTTCATTACCTACACATGTATA-----TCTTTACATATCGTGTTGG---TCA---A-CACCTTTTTCATA-TTAT------A---G-----CA--TTT---TACCTGTTAGACGGGGATCATTTTTCTACGGAAA--TC-TTTTTCTTCAT------GTGTAA-CGCGCAGAAAA-C-TGACCTTTAGCTCTTATTTCTTCAAA------CCA--ATTT---TGCTTCA------G-TT---------GG----AAG---GTCATT------T---------------------------AATGACC-TC---TGGTCATTATTCTATGGGGGTCACTACTCTTCTTTt
gi|6 : TTGTTGAAATAATACTAACAA-------------------AGT------------------ACTTTATTTTAGTC--CGTTCTACACGATGATCACAGGTTCTACATGATGAT--CAC----AGG--TGC-A----CTG-------TATTAA--CCAT-----TTGA-----T-AAAAGTAC-A-------ATGGCAA------CTTTGTGCACAAAT-GGCAA-AACGTATAAAAT-ATAAACTAA-----AT-CC-----TATTTCGTCAC----------ATA-----TCT---------GT----A-----A---A----------TA-A-ACAT------G----------A--CTT---T---TTTAAGGCATGGGGAATTTTTCTATGAGGG--TCATTTTT-TTTAT------GTATAA-CATGCAGAAAA-C-ATATCCCTGGTTATTTATTTTTCAAAA-TAATTCATTTTTT---TTCTT-----------T---------GA----GTT---GTCATT------TT-TCG-----------ACGC-AGA-AGAATTACT-TC---CAGTCATTATTCTAT-GGGGTCATTGTTTTTCTTT
gi|7 : GTGTGATATATTGATGTT---AAGTACTGTACTTGAATATTTGTTGACTTTCNNNNNNNNNNNNNNNNNNNTA----------GATAG----------AT-------------ATAACTGTGGCAAATCA-------------AAT------------TTC----------AGATCAACGGCCC-GTGTTCA-CATTTAACCGTTACTTAGTCTCTGTAGCGTATT-------------GGGAACTCTAAAAACCAGGCTCTTTATATGTGCATGAAAAGTACATATTTTGTTGAAATAATACTAACAAGTATATTTGGAT------TAGTGTATA----AGGTAACACAATTTACTTTAGTC--CGTT-------------------TCTACACAGTGAT----G----AGT--TGT-A----TTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ACTGCAA------CTTTGTACACATTTGG--AATAAAGTAT---ATCATAAACT
gi|8 : TC--CGTT-------------------TCTACACA-TAATTTCACTATAATT--TGCCA----CTG-------TATAAA--CCGT-----TACA-----TAAAAAGTGC-A-------A-TGCAA------ATTTGCACACATAT-----AT----TATAAAAT-A-AAACTAATTGCTATATG-----TATTTCATCCAC--------TATA-----T-TATACATATCGT----AATGTAATGTA-CACCT-TTTTA-ATAAAT------A---G-----CA--TTTTACT---TTTAAGGCAGGGTGCA-TGTTCT-CATGGG---CACTTTTCTTCATGTACAGGTATAATCACGCAGAAAATC-T---CCCTGGGTTCTTTTTC------------------TCT---TTTTTCAG-----G-CT---------------GGC---GTCATT------TTATCT-----------ACGT-AAATAAAAT-ATC-CC---CAGTCGTTATTg
gi|9 : TC--CGTT-------------------TCTACACAGTAAT--CAC----AATATTGC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGCAA-------AATGCAA------C-TTGTACACATAT-GA-AATAAAGTATGAAAT-ATAAACTAATTGCTATATG-----TATTTCATTACT--------GATA-----TCATTACATATCATATTGA---TCA---A-CTC---TTTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000 8888888888888888888888888888 2222222 1111111 111111 2222222222222222222 1111111 11111 1111111 111111 222222222 222222222222222 11111111 11111 55555555555555555555555555555555555555555555555555 2222222222222222222222222 111111 11111111111
lowQualScore : 1 777 5 8 0 1 55555555555555555555555555555555555555555555555555555555 0 1 9999999999999999999999999999 1 77 1111111 2 6 7 1 0 5555555 111111 0 44 3333333333333333333 44 555 444 3 3 6666 0000000 0 55 44444 99999 3 3 1111111 4 000000 333333333 3 555555555555555 44444444 00000 0 3 22222222222222222222222222222222222222222222222222 66 777 777 1 2 88888888 1 999999 3 0 3 3 3 2 666 555 3333333333333333333333333 666 000000 3 77777777777 44 3 5 3 555 4
lowQualScore : . ... . . . . ........................................................ . . ............................ . .. ....... . . . . . ....... ...... . .. ................... .. ... ... . . .... ....... . .. ..... ..... . . ....... . ...... ......... . ............... ........ ..... . . .................................................. .. ... ... . . ........ . ...... . . . . . . ... ... ......................... ... ...... . ........... .. . . . ... .
lowQualScore : 0 000 6 2 6 0 44444444444444444444444444444444444444444444444444444444 8 0 7777777777777777777777777777 3 99 7777777 5 6 3 3 1 8888888 000000 1 22 8888888888888888888 22 444 444 1 1 5555 0000000 1 00 11111 11111 6 6 8888888 5 555555 111111111 6 999999999999999 55555555 00000 9 8 00000000000000000000000000000000000000000000000000 11 000 000 3 3 66666666 1 666666 3 2 6 6 1 5 333 444 7777777777777777777777777 444 555555 6 33333333333 88 6 9 3 888 4
consensus : GTGTGATCTANCGATGTTTTTGAGTACTGTACTTGAATATTTGTTGACTTTCANAA---------------TA----------GATAG-T--G----AT-------------AAAACTGTGGCAAANCACGT----------AAT------------TACGATAAATTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGGCTCTTTAAATGTNCATGAAAAGAACATATTTTGTTGAAATAATACTAACAAGTGTATTTGGAC------TAGTGTATA----AGGTAACACACTTTACTTTAGTC--CGTT-------------------TCTACACGGTGAT--CAC---AAT--T-GC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ANTGCAA------CTTTGTACACATAT-G--AATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----TATTTCATTACC--------TATA-----TCTTTACATNTCGT----A---TCA---A-CAC---TTTTA-A-ATAT------A---G-----TA--CTT---T---TTTAAGGCAGGGGTCATTTTTCTACGNGGG--TCATTTTTCTTCAT------GTATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--NTTT---TTCTTCA------G-CT---------GG----GGG---GTCATT------TT-TCT-----------ACGT-AGA-AAAATGACC-CC---CGGTCGTTATTCTACGGGGGTCATTATTCTTCTTTA
Reference ( family-1165 ) : GTGTGATCTANCGATGTTTTTGAGTACTGTACTTGAATATTTGTTGACTTTCANAA---------------TA----------GATAG-T--G----AT-------------AAAACTGTGGCAAANCACGT----------AAT------------TACGATAAATTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGGCTCTTTAAATGTNCATGAAAAGAACATATTTTGTTGAAATAATACTAACAAGTGTATTTGGAC------TAGTGTATA----AGGTAACACACTTTACTTTAGTC--CGTT-------------------TCTACACGGTGAT--CAC---AAT--T-GC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ANTGCAA------CTTTGTACACATAT-G--AATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----TATTTCATTACC--------TATA-----TCTTTACATNTCGT----A---TCA---A-CAC---TTTTA-A-ATAT------A---G-----TA--CTT---T---TTTAAGGCAGGGGTCATTTTTCTACGNGGG--TCATTTTTCTTCAT------GTATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--NTTT---TTCTTCA------G-CT---------GG----GGG---GTCATT------TT-TCT-----------ACGT-AGA-AAAATGACC-CC---CGGTCGTTATTCTACGGGGGTCATTATTCTTCTTTA
gi|1 : TGTAACCTAGCGGTGTTTTTG-----T-TAACTGAATATTTGTTGACTTTCAAAA---------------TAGATACATGTAGATAG-T--GCTCTATTGTACCCAGTGAGAAAACTG--GCAAAGCACATTTAATATCAAAAC------------TACGATAAATTACAGATCAAC--CCCTATGTTCGGCATTTAG-------TTAACCTCTGTAGCGTATTCAATCAAAGTAATGAGAGTCCTAATAACTAGGGTCTTTAAATGTACACAAAAAGAACATATTTTGCTGAAATAAAACTAACATGTGTATTTGGAC------TAGTGTATA----AGGTAACACATTCGACTTTGGTC--CGTT-------------------TCTACACGATGAT--TAC---CAT--T-GC-A----CTG-------TA
gi|1 : ACACTCCACTTTAGTT--TGTT-------------------TCTACACAGTTAT--CAG---AAT--T-GC-A----CTG-------TATTAA--CCGTGC---TGTT-----T-AGAAGTGC-A-------AGTGCAA------TTTTGCACACATATGG--AATAAAGTATAAAAT-ATAAACTAA-----ATGCTGTATGTATTTCATAACC--------TTTA-----TCTTTACATGTCGTATTGA---TCA---A-CACTT-TTTTA-A-AAAC------A---GCATTTTA--CCT---T---TTTAAGGCAGGGGT-A------------------ATTTTTCTTCAT------GTATAA-CACGCAGcactccactttagtttgtttctacacagttatcagaattgcactgtattaaccgtgctgtttagaagtgcaagtgcaattttgcacacatatggaataaagtataaaatataaactaaatgctgtatgtatttcataacctttatctttacatgtcgtattgatcaacacttttttaaaaacagcattttacctttttaaggcaggggtaatttttcttcatgtataacacgcaggggggtcatttcccggtcattattctacggaggtcattattcttcttta
gi|1 : tgtaacctagcggtgtttttgttaactgaatatttgttgactttcaaaatagatacatgtagatagtgctctattgtacccagtgagaaaactggcaaagcacatttaatatcaaaactacgataaattacagatcaacccctatgttcggcatttagttaacctctgtagcgtattcaatcaaagtaatgagagtcctaataactagggtctttaaatgtacacaaaaagaacatattttgctgaaataaaactaacatgtgtatttggactagtgtataaggtaacacattcgactttggtccgtttctacacgatgattaccattgcactgtTTTTTTAAAAA-CAG--CA--TTTTACCTTTTTAA------GGC-----------A----GGG---GTAATT------TT-TCTTCATGTATAACACGC-AGG-GGGGTCATTTCC---CGGTCATTATTCTACGGAGGTCATTATTCTTCTTTAgggggtcatttcccggtcattattctacggaggtcattattcttcttta
gi|10 : tgtaacctagcggtgtttttgttaactgaatatttgttgactttcaaaatagatacatgtagatagtgctctattgtacccagtgagaaaactggcaaagcacatttaatatcaaaactacgataaattacagatcaacccctatgttcggcatttagttaacctctgtagcgtattcaatcaaagtaatgagagtcctaataactagggtctttaaatgtacacaaaaagaacatattttgctgaaataaaactaacatgtgtatttggactagtgtataaggtaacacattcgactttggtccgtttctacacgatgattaccattgcactgtacactccactttagtttgtttctacacagttatcagaattgcactgtattaaccgtgctgtttagaagtgcaagtgcaattttgcacacatatggaataaagtataaaatataaactaaatgctgtatgtatttcataacctttatctttacatgtcgtattgatcaacacTTAAAATGTTCATCAAAAGAACATATTTGGTTGAAATAATACTGACAGGTGTATTTGGACTAACGTTAGTGTACAAGCTAGGTA--ACACTTTGCTTTAGTCCGCGTT-------------------CCTACACGGTGAT--CAC---AGT--T-GC-A----TTG-------T
gi|11 : G--TAATTTTTCTTC------------------GTAGAAAA-A-TGACCGCTTGGTCTTTTTTCTTCAAAA-TTATCCA--CTTT---TTCTTCA------G-TT---------GG----AGGTGTGTAATT------TG-TCT-----------TCGT-AGA-AAAA--ACA-CC---C------------ACGGGGTTAATTAATCTTCTTTA
gi|12 : tGTGTGATCTATTGATGTTT--GAGTACTTTACTTGAATATTTGCTGACTTTCAAAT---------------TA----------GATAGATG-G----AT-------------AAAACTTTGGCAAATCACAT----------AATTATAATAAAAACTACGATAGATTGAAAATCAAT--CC
gi|13 : ACGCAGAAAA-C-TGACCCCTGGGTCTTTTTGCTTCAAAA-TAAACCA--GTTT---TTCTTCA------G-CT---------GT----GTG----TCATT------TT-TCT-----------ACGT-AAA-AAAATTACT-CC---CAGTCGTTATTCTACGGGGGTCATTATTCTTC
gi|14 : AATCAAG------------AC------------TACGATCAACTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCATA--CACTCAAAGTATTGAGAGTTCT-AAATCCAACCTCCTTAAATGTACATGAAAAGAA
gi|15 : GTATAAAAT-ATAAACTAA-----ATGCTG----TATATCATTATC--------TTTAGTGATTTTTTACAGATCTT----A---TTG---ATCAA---T---A-G-ATTT----------------TA--CTC---T---TTTAAGGCAGGGGTCATTTTTCTACt
gi|16 : CTTCAT------GTATAA-CATGCAGAAAA-C-TGACTCATGGGTATTTATTTTTCAAAA-CAATCCA--TTTT---TTCTTCA------G-CT----------G----GGG---GTCATT------AT-TCT-----------ACG
gi|16 : TT---T---CTTCAGCTGGGGGTCATTATTCTACGGGAG--TCATTATTCTggagtcattattct
gi|16 : cttcatgtataacatgcagaaaactgactcatgggtatttatttttcaaaacaatccatttGGTCATTATTCTACGGGAGTCATTATTCT
gi|17 : cttcatgtataacatgcagaaaactgactcatgggtatttatttttcaaaacaatccattttttcttcagctgggAT--CAC---AAC--T-GC-A----CTA-------TAATAA--CCGT-----TACA-----T-AAAAGTGC-A-------ACTGC-A------TTTTGTGCACTTAT-G--G---------------------TAA-----ATGTT-----TTTTTCATTACC--------TATA-----TCTGTACATCTCGT----A---T
gi|18 : at-TAATCCA--TTTT---TTCTTCA------A-CT---------GG----AGG---GCCATT------TT-TCT-----------ACGT-CGA-AAAATGACC-CC---CGGTCATTATTTTACGGGGGTCATAATTCTT
gi|19 : TATTATAGTT--CGTT-------------------TCTACACGGTGAT--CAC---AAT--T-GC-A----CTG-------T---------GT-----TATA-----T-GATAGTGC-G-------ATTGCAA------TTTTGTACAtac
gi|2 : taatgaataatacGTGTGATCTAGCGATGTTTTTGAGTACTATACTTGACTATTTGTTGACTTTCACAA---------------TA----------GAT---T--G----AT-------------AAAACTGTGGCAAAGCACGT----------GGT------------TATAATCAATTAAAAATCAAC--CCCTGTGTTCGGCATTTAG-------TTGATCTGTCTGGCGTATTCAATCAAAGTATTGAAAGTTCTAAAACCCACACTTTTTAAATGTTCATGAAAAGAACATAT--------------ACTAACAAGTGTATTTGGAC------TAGTGTATA----AAGTAACACACTCTACTTTAGTC--CGTT-------------------TCTTTACGGTGAT--CAC---ATC--T-GC-A----CTA-------TAATAA--CCGT-----TACA-----T-AAAAGTGC-G-------ATTGCAA------CTTTGTAC-----------ATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----T-TTTCATTATC--------TATA-----TCTTTACATCTCGT----A---TCA---A-CAC---TTTTA-A-ATA-------A---A-----TA--CTT---C---TTTAAGGCAGGAGTCATTTTTCTACGTGGG--TTATTTTTCTTCAT------GTATAA-CAAGCAAAAAA-C-TGACTCCTGGGTCTTTTTTCTTCAAAA-TCATCCA--ATTC---TTCTTTA------G-CTGGGGAGGGGGG----GGG---GTCATT------TT-TCT------------CGT-CGA-AAAATGACC-CC---TAATCATTATTCTACGGGGTTCATGATTTTTCTTTA
gi|20 : CGT----A---TCA---G-CAC---CTTTA-A-ACATCATTTTACGTG-----TA--CTT---T---TT-AAGGCAGGG-TCAATTTTCTACACGGGAGTCATTTTTCTTCAT------GTA
gi|21 : CAGGGGTAATTTTTCTACGAGGG--TCA------------------------------GAAAA-C-TTACCCCTGGGTCTTTTTTCTTCAAAA-TAATCTA--TTTT---TTCTTCA------G-TT---------G
gi|22 : aTATAA-CACGCAGAAAA-C-TGACCCCTGGGCCTTTTTTCTTCAATA-TAAATCA--AGCT---TTCTTCA------G-CT---------G
gi|23 : A-AAATTGACC-CC---CGTTT-TTATTTTACAGGGATCATTAGTATTCTTTAtagt
gi|24 : ctTTAAGGCAAGGGTCATTTTTCTACGGGGG--TCAGTTTTCTTTCT------GTATAA-cag
gi|25 : ACACTTTACTTTAGCC--CGTT-------------------TCTACACGGT
gi|26 : tcacaattgcactgt-CC---CGGTCGATATTCTACGGGGGCCAGTATTCTTCTT
gi|3 : GTGTCATCTAACGATGTTTTTGCGTACTGTACTTGACTATTTGTTGACTTTTACAA---------------TA----------GATAG-TTAG----CT-------------AAAACAGTGGTAAAGCACGT----------AATCATAATCAATACTACGATAAATTGAAGATCAAC--CTCTGTGTTCGGCATTTAC-------TTAATCTTTTTAGTGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGACTCTTCAAATGTTCATGAAAAGAACATATTTTGTTGAAATGATACTAACCAGTGTAT---GA--------GGTACAT-------GTAACACACTTTACTCTAGTG--CGTT-------------------CCTACACGGTGA----------------------------------------------------ATA-----C-GAAAGTGC-A-------AATGCAA------CTTTGTACACATA--G--AATAAAGTATAGAAT-ATAAACTAA-----A--TT-----AATGTTATTAAA--------TAAA-----AGTTT-----TCTT----------------------TTTTA-A-G-GC------A---G-----GAGTCTT---T---TTTTCTACGGGAGTCATTTTCCTCCATG-----------------T------ATATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--GTTT---TTCTTCA------G-CT----------T----GGG---GTAATTTTTTTCTT-TCT-----------ACGTAAGA-AAAATTACC-CCACGCGGTCGTTATTCCACGGTGGTCATTATTCTTCTTTA
gi|4 : GATAAGTCGAAGACCAGC--CCTTGCGTCTGGCGCTTAG-------TTAATATCTGCAGCAT-TGAAATCAAATTATTTAGAGTTCGAAAAACCAGGCTCTTTAAATGT-------------ATAT------GAAATGATACTAACAAGCGAATTTTAAC------TAGTGTATA----TGGTAACACACTTTACAAAAGTC--CGTT-------------------TCTACACAATGAT--CAC---AGA--T-GC-ATTAGCTT-------TATCAA--CTGT-----TACA-----T-AAACGTGC-A-------ATTGCAA------CATT------------------AAGTGTAAAAT-ATAAACTAA-----ATGCT------ATTTCGTTACC--------AATA-----TCTTTACATCTCGT----A---TCA---A-CAC---TTTTG-A-ATAT------C---ATTT--TA--C-T---T---TTTAAGGCAGGAGTTAT-----TATGTA---------------CAT------G--TAA-CATGCAGAAAA-CGTG-CCCCTAAGTCTCCTTTCTTAAAAATTAATTCA--GTTC---TTCTTCAGGAGGGG-GT---------GGGGGTGGG---GGCATT------TT-TCG-----------ATGG-TGG-GGAATGACC-CC---CGGTCATTATTCTATGGGAGTCATCATTTTTTTTT
gi|5 : tgaaaacaagACAAGTGTATTTGGAC------TATTGTACA----AGGTAACCTGCTCTTCTATATTC--TGTT-------------------TCTACAGAGTTAT--CAA---AAC--T-GC-A----CTGTGCACTCTGTTGAGTCCGTTTCTATACAGTCATC-ACAACTGC-ACTGTATTAGTGCAAACACATCTTTGTACACATATGG--AATGAAGTATAAAAT-GTAAACTAA-----ATGTTATATGTATTTCATTACCTACACATGTATA-----TCTTTACATATCGTGTTGG---TCA---A-CACCTTTTTCATA-TTAT------A---G-----CA--TTT---TACCTGTTAGACGGGGATCATTTTTCTACGGAAA--TC-TTTTTCTTCAT------GTGTAA-CGCGCAGAAAA-C-TGACCTTTAGCTCTTATTTCTTCAAA------CCA--ATTT---TGCTTCA------G-TT---------GG----AAG---GTCATT------T---------------------------AATGACC-TC---TGGTCATTATTCTATGGGGGTCACTACTCTTCTTTt
gi|6 : TTGTTGAAATAATACTAACAA-------------------AGT------------------ACTTTATTTTAGTC--CGTTCTACACGATGATCACAGGTTCTACATGATGAT--CAC---AGG--T-GC-A----CTG-------TATTAA--CCAT-----TTGA-----T-AAAAGTAC-A-------ATGGCAA------CTTTGTGCACAAAT-GGCAA-AACGTATAAAAT-ATAAACTAA-----AT-CC-----TATTTCGTCAC----------ATA-----TCT---------GT----A-----A---A----------TA-A-ACAT------G----------A--CTT---T---TTTAAGGCATGGGGAATTTTTCTATGAGGG--TCATTTTTTTT-AT------GTATAA-CATGCAGAAAA-C-ATATCCCTGGTTATTTATTTTTCAAAA-TAATTCATTTTTT---TTCTT-----------T---------GA----GTT---GTCATT------TT-TCG-----------ACGC-AGA-AGAATTACT-TC---CAGTCATTATTCTAT-GGGGTCATTGTTTTTCTTT
gi|7 : GTGTGATATATTGATGTT---AAGTACTGTACTTGAATATTTGTTGACTTTCNNNNNNNNNNNNNNNNNNNTA----------GATAG---------AT-------------ATAACTGTGGCAAATCA-------------AAT------------TTC----------AGATCAACGGCCC-GTGTTCA-CATTTAACCGTTACTTAGTCTCTGTAGCGTATT-------------GGGAACTCTAAAAACCAGGCTCTTTATATGTGCATGAAAAGTACATATTTTGTTGAAATAATACTAACAAGTATATTTGGAT------TAGTGTATA----AGGTAACACAATTTACTTTAGTC--CGTT-------------------TCTACACAGTGAT----G---AGT--T-GT-A----TTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ACTGCAA------CTTTGTACACATTTGG--AATAAAGTAT---ATCATAAACT
gi|8 : TC--CGTT-------------------TCTACACA-TAATTTCACTATAAT--TTGCCA----CTG-------TATAAA--CCGT-----TACA-----TAAAAAGTGC-A-------A-TGCAA------ATTTGCACACATAT-----AT----TATAAAAT-A-AAACTAATTGCTATATG-----TATTTCATCCAC--------TATA-----T-TATACATATCGT----AATGTAATGTA-CACCT-TTTTA-ATAAAT------A---G-----CA--TTTTACT---TTTAAGGCAGGGTGCA-TGTTCT-CATGGG---CACTTTTCTTCATGTACAGGTATAATCACGCAGAAAATC-T---CCCTGGGTTCTTTTTC------------------TCT---TTTTTCAG-----G-CT---------------GGC---GTCATT------TTATCT-----------ACGT-AAATAAAAT-ATC-CC---CAGTCGTTATTg
gi|9 : TC--CGTT-------------------TCTACACAGTAAT--CAC---AATATT-GC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGCAA-------AATGCAA------C-TTGTACACATAT-GA-AATAAAGTATGAAAT-ATAAACTAATTGCTATATG-----TATTTCATTACT--------GATA-----TCATTACATATCATATTGA---TCA---A-CTC---TTTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000 8888888888888888888888888888 2222222 1111111 111111 2222222222222222222 1111111 11111 1111111 111111 222222222 222222222222222 11111111 11111 55555555555555555555555555555555555555555555555555 2222222222222222222222222 111111 11111111111
lowQualScore : 1 777 5 8 0 1 55555555555555555555555555555555555555555555555555555555 0 1 9999999999999999999999999999 1 77 1111111 2 6 7 1 0 5555555 111111 0 44 3333333333333333333 44 555 444 3 3 6666 0000000 0 55 44444 99999 3 3 1111111 4 000000 333333333 3 555555555555555 44444444 00000 0 3 22222222222222222222222222222222222222222222222222 66 777 777 1 2 88888888 1 999999 3 0 3 3 3 2 666 555 3333333333333333333333333 666 000000 3 77777777777 44 3 5 3 555 4
lowQualScore : . ... . . . . ........................................................ . . ............................ . .. ....... . . . . . ....... ...... . .. ................... .. ... ... . . .... ....... . .. ..... ..... . . ....... . ...... ......... . ............... ........ ..... . . .................................................. .. ... ... . . ........ . ...... . . . . . . ... ... ......................... ... ...... . ........... .. . . . ... .
lowQualScore : 0 000 6 2 6 0 44444444444444444444444444444444444444444444444444444444 8 0 7777777777777777777777777777 3 99 7777777 5 6 3 3 1 8888888 000000 1 22 8888888888888888888 22 444 444 1 1 5555 0000000 1 00 11111 11111 6 6 8888888 5 555555 111111111 6 999999999999999 55555555 00000 9 8 00000000000000000000000000000000000000000000000000 11 000 000 3 3 66666666 1 666666 3 2 6 6 1 5 333 444 7777777777777777777777777 444 555555 6 33333333333 88 6 9 3 888 4
consensus : GTGTGATCTANCGATGTTTTTGAGTACTGTACTTGAATATTTGTTGACTTTCANAA---------------TA----------GATAG-T--G----AT-------------AAAACTGTGGCAAANCACGT----------AAT------------TACGATAAATTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGGCTCTTTAAATGTNCATGAAAAGAACATATTTTGTTGAAATAATACTAACAAGTGTATTTGGAC------TAGTGTATA----AGGTAACACACTTTACTTTAGTC--CGTT-------------------TCTACACGGTGAT--CAC---AAT--T-GC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ANTGCAA------CTTTGTACACATAT-G--AATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----TATTTCATTACC--------TATA-----TCTTTACATNTCGT----A---TCA---A-CAC---TTTTA-A-ATAT------A---G-----TA--CTT---T---TTTAAGGCAGGGGTCATTTTTCTACGNGGG--TCATTTTTCTTCAT------GTATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--NTTT---TTCTTCA------G-CT---------GG----GGG---GTCATT------TT-TCT-----------ACGT-AGA-AAAATGACC-CC---CGGTCGTTATTCTACGGGGGTCATTATTCTTCTTTA
Reference ( family-1165 ) : GTGTGATCTANCGATGTTTTTGAGTACTGTACTTGAATATTTGTTGACTTTCANAA---------------TA----------GATAG-T--G----AT-------------AAAACTGTGGCAAANCACGT----------AAT------------TACGATAAATTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGGCTCTTTAAATGTNCATGAAAAGAACATATTTTGTTGAAATAATACTAACAAGTGTATTTGGAC------TAGTGTATA----AGGTAACACACTTTACTTTAGTC--CGTT-------------------TCTACACGGTGAT--CAC---AAT--T-GC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ANTGCAA------CTTTGTACACATAT-G--AATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----TATTTCATTACC--------TATA-----TCTTTACATNTCGT----A---TCA---A-CAC---TTTTA-A-ATAT------A---G-----TA--CTT---T---TTTAAGGCAGGGGTCATTTTTCTACGNGGG--TCATTTTTCTTCAT------GTATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--NTTT---TTCTTCA------G-CT---------GG----GGG---GTCATT------TT-TCT-----------ACGT-AGA-AAAATGACC-CC---CGGTCGTTATTCTACGGGGGTCATTATTCTTCTTTA
gi|1 : TGTAACCTAGCGGTGTTTTTG-----T-TAACTGAATATTTGTTGACTTTCAAAA---------------TAGATACATGTAGATAG-T--GCTCTATTGTACCCAGTGAGAAAACTG--GCAAAGCACATTTAATATCAAAAC------------TACGATAAATTACAGATCAAC--CCCTATGTTCGGCATTTAG-------TTAACCTCTGTAGCGTATTCAATCAAAGTAATGAGAGTCCTAATAACTAGGGTCTTTAAATGTACACAAAAAGAACATATTTTGCTGAAATAAAACTAACATGTGTATTTGGAC------TAGTGTATA----AGGTAACACATTCGACTTTGGTC--CGTT-------------------TCTACACGATGAT--TAC---CAT--T-GC-A----CTG-------TA
gi|1 : ACACTCCACTTTAGTT--TGTT-------------------TCTACACAGTTAT--CAG---AAT--T-GC-A----CTG-------TATTAA--CCGTGC---TGTT-----T-AGAAGTGC-A-------AGTGCAA------TTTTGCACACATATGG--AATAAAGTATAAAAT-ATAAACTAA-----ATGCTGTATGTATTTCATAACC--------TTTA-----TCTTTACATGTCGTATTGA---TCA---A-CACTT-TTTTA-A-AAAC------A---GCATTTTA--CCT---T---TTTAAGGCAGGGGT-A------------------ATTTTTCTTCAT------GTATAA-CACGCAGcactccactttagtttgtttctacacagttatcagaattgcactgtattaaccgtgctgtttagaagtgcaagtgcaattttgcacacatatggaataaagtataaaatataaactaaatgctgtatgtatttcataacctttatctttacatgtcgtattgatcaacacttttttaaaaacagcattttacctttttaaggcaggggtaatttttcttcatgtataacacgcaggggggtcatttcccggtcattattctacggaggtcattattcttcttta
gi|1 : tgtaacctagcggtgtttttgttaactgaatatttgttgactttcaaaatagatacatgtagatagtgctctattgtacccagtgagaaaactggcaaagcacatttaatatcaaaactacgataaattacagatcaacccctatgttcggcatttagttaacctctgtagcgtattcaatcaaagtaatgagagtcctaataactagggtctttaaatgtacacaaaaagaacatattttgctgaaataaaactaacatgtgtatttggactagtgtataaggtaacacattcgactttggtccgtttctacacgatgattaccattgcactgtTTTTTTAAAAA-CAG--CA--TTTTACCTTTTTAA------GGC-----------A----GGG---GTAATT------TT-TCTTCATGTATAACACGC-AGG-GGGGTCATTTCC---CGGTCATTATTCTACGGAGGTCATTATTCTTCTTTAgggggtcatttcccggtcattattctacggaggtcattattcttcttta
gi|10 : tgtaacctagcggtgtttttgttaactgaatatttgttgactttcaaaatagatacatgtagatagtgctctattgtacccagtgagaaaactggcaaagcacatttaatatcaaaactacgataaattacagatcaacccctatgttcggcatttagttaacctctgtagcgtattcaatcaaagtaatgagagtcctaataactagggtctttaaatgtacacaaaaagaacatattttgctgaaataaaactaacatgtgtatttggactagtgtataaggtaacacattcgactttggtccgtttctacacgatgattaccattgcactgtacactccactttagtttgtttctacacagttatcagaattgcactgtattaaccgtgctgtttagaagtgcaagtgcaattttgcacacatatggaataaagtataaaatataaactaaatgctgtatgtatttcataacctttatctttacatgtcgtattgatcaacacTTAAAATGTTCATCAAAAGAACATATTTGGTTGAAATAATACTGACAGGTGTATTTGGACTAACGTTAGTGTACAAGCTAGGTA--ACACTTTGCTTTAGTCCGCGTT-------------------CCTACACGGTGAT--CAC---AGT--T-GC-A----TTG-------T
gi|11 : G--TAATTTTTCTTC------------------GTAGAAAA-A-TGACCGCTTGGTCTTTTTTCTTCAAAA-TTATCCA--CTTT---TTCTTCA------G-TT---------GG----AGGTGTGTAATT------TG-TCT-----------TCGT-AGA-AAAA--ACA-CC---C------------ACGGGGTTAATTAATCTTCTTTA
gi|12 : tGTGTGATCTATTGATGTTT--GAGTACTTTACTTGAATATTTGCTGACTTTCAAAT---------------TA----------GATAGATG-G----AT-------------AAAACTTTGGCAAATCACAT----------AATTATAATAAAAACTACGATAGATTGAAAATCAAT--CC
gi|13 : ACGCAGAAAA-C-TGACCCCTGGGTCTTTTTGCTTCAAAA-TAAACCA--GTTT---TTCTTCA------G-CT---------GT----GTG----TCATT------TT-TCT-----------ACGT-AAA-AAAATTACT-CC---CAGTCGTTATTCTACGGGGGTCATTATTCTTC
gi|14 : AATCAAG------------AC------------TACGATCAACTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCATA--CACTCAAAGTATTGAGAGTTCT-AAATCCAACCTCCTTAAATGTACATGAAAAGAA
gi|15 : GTATAAAAT-ATAAACTAA-----ATGCTG----TATATCATTATC--------TTTAGTGATTTTTTACAGATCTT----A---TTG---ATCAA---T---A-G-ATTT----------------TA--CTC---T---TTTAAGGCAGGGGTCATTTTTCTACt
gi|16 : CTTCAT------GTATAA-CATGCAGAAAA-C-TGACTCATGGGTATTTATTTTTCAAAA-CAATCCA--TTTT---TTCTTCA------G-CT----------G----GGG---GTCATT------AT-TCT-----------ACG
gi|16 : TT---T---CTTCAGCTGGGGGTCATTATTCTACGGGAG--TCATTATTCTggagtcattattct
gi|16 : cttcatgtataacatgcagaaaactgactcatgggtatttatttttcaaaacaatccatttGGTCATTATTCTACGGGAGTCATTATTCT
gi|17 : cttcatgtataacatgcagaaaactgactcatgggtatttatttttcaaaacaatccattttttcttcagctgggAT--CAC---AAC--T-GC-A----CTA-------TAATAA--CCGT-----TACA-----T-AAAAGTGC-A-------ACTGC-A------TTTTGTGCACTTAT-G--G---------------------TAA-----ATGTT-----TTTTTCATTACC--------TATA-----TCTGTACATCTCGT----A---T
gi|18 : at-TAATCCA--TTTT---TTCTTCA------A-CT---------GG----AGG---GCCATT------TT-TCT-----------ACGT-CGA-AAAATGACC-CC---CGGTCATTATTTTACGGGGGTCATAATTCTT
gi|19 : TATTATAGTT--CGTT-------------------TCTACACGGTGAT--CAC---AAT--T-GC-A----CTG-------T---------GT-----TATA-----T-GATAGTGC-G-------ATTGCAA------TTTTGTACAtac
gi|2 : taatgaataatacGTGTGATCTAGCGATGTTTTTGAGTACTATACTTGACTATTTGTTGACTTTCACAA---------------TA----------GAT---T--G----AT-------------AAAACTGTGGCAAAGCACGT----------GGT------------TATAATCAATTAAAAATCAAC--CCCTGTGTTCGGCATTTAG-------TTGATCTGTCTGGCGTATTCAATCAAAGTATTGAAAGTTCTAAAACCCACACTTTTTAAATGTTCATGAAAAGAACATAT--------------ACTAACAAGTGTATTTGGAC------TAGTGTATA----AAGTAACACACTCTACTTTAGTC--CGTT-------------------TCTTTACGGTGAT--CAC---ATC--T-GC-A----CTA-------TAATAA--CCGT-----TACA-----T-AAAAGTGC-G-------ATTGCAA------CTTTGTAC-----------ATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----T-TTTCATTATC--------TATA-----TCTTTACATCTCGT----A---TCA---A-CAC---TTTTA-A-ATA-------A---A-----TA--CTT---C---TTTAAGGCAGGAGTCATTTTTCTACGTGGG--TTATTTTTCTTCAT------GTATAA-CAAGCAAAAAA-C-TGACTCCTGGGTCTTTTTTCTTCAAAA-TCATCCA--ATTC---TTCTTTA------G-CTGGGGAGGGGGG----GGG---GTCATT------TT-TCT------------CGT-CGA-AAAATGACC-CC---TAATCATTATTCTACGGGGTTCATGATTTTTCTTTA
gi|20 : CGT----A---TCA---G-CAC---CTTTA-A-ACATCATTTTACGTG-----TA--CTT---T---TT-AAGGCAGGG-TCAATTTTCTACACGGGAGTCATTTTTCTTCAT------GTA
gi|21 : CAGGGGTAATTTTTCTACGAGGG--TCA------------------------------GAAAA-C-TTACCCCTGGGTCTTTTTTCTTCAAAA-TAATCTA--TTTT---TTCTTCA------G-TT---------G
gi|22 : aTATAA-CACGCAGAAAA-C-TGACCCCTGGGCCTTTTTTCTTCAATA-TAAATCA--AGCT---TTCTTCA------G-CT---------G
gi|23 : A-AAATTGACC-CC---CGTTT-TTATTTTACAGGGATCATTAGTATTCTTTAtagt
gi|24 : ctTTAAGGCAAGGGTCATTTTTCTACGGGGG--TCAGTTTTCTTTCT------GTATAA-cag
gi|25 : ACACTTTACTTTAGCC--CGTT-------------------TCTACACGGT
gi|26 : tcacaattgcactgt-CC---CGGTCGATATTCTACGGGGGCCAGTATTCTTCTT
gi|3 : GTGTCATCTAACGATGTTTTTGCGTACTGTACTTGACTATTTGTTGACTTTTACAA---------------TA----------GATAG-TTAG----CT-------------AAAACAGTGGTAAAGCACGT----------AATCATAATCAATACTACGATAAATTGAAGATCAAC--CTCTGTGTTCGGCATTTAC-------TTAATCTTTTTAGTGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGACTCTTCAAATGTTCATGAAAAGAACATATTTTGTTGAAATGATACTAACCAGTGTAT---GA--------GGTACAT-------GTAACACACTTTACTCTAGTG--CGTT-------------------CCTACACGGTGA----------------------------------------------------ATA-----C-GAAAGTGC-A-------AATGCAA------CTTTGTACACATA--G--AATAAAGTATAGAAT-ATAAACTAA-----A--TT-----AATGTTATTAAA--------TAAA-----AGTTT-----TCTT----------------------TTTTA-A-G-GC------A---G-----GAGTCTT---T---TTTTCTACGGGAGTCATTTTCCTCCATG-----------------T------ATATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--GTTT---TTCTTCA------G-CT----------T----GGG---GTAATTTTTTTCTT-TCT-----------ACGTAAGA-AAAATTACC-CCACGCGGTCGTTATTCCACGGTGGTCATTATTCTTCTTTA
gi|4 : GATAAGTCGAAGACCAGC--CCTTGCGTCTGGCGCTTAG-------TTAATATCTGCAGCAT-TGAAATCAAATTATTTAGAGTTCGAAAAACCAGGCTCTTTAAATGT-------------ATAT------GAAATGATACTAACAAGCGAATTTTAAC------TAGTGTATA----TGGTAACACACTTTACAAAAGTC--CGTT-------------------TCTACACAATGAT--CAC---AGA--T-GC-ATTAGCTT-------TATCAA--CTGT-----TACA-----T-AAACGTGC-A-------ATTGCAA------CATT------------------AAGTGTAAAAT-ATAAACTAA-----ATGCT------ATTTCGTTACC--------AATA-----TCTTTACATCTCGT----A---TCA---A-CAC---TTTTG-A-ATAT------C---ATTT--TA--C-T---T---TTTAAGGCAGGAGTTAT-----TATGTA---------------CAT------G--TAA-CATGCAGAAAA-CGTG-CCCCTAAGTCTCCTTTCTTAAAAATTAATTCA--GTTC---TTCTTCAGGAGGGG-GT---------GGGGGTGGG---GGCATT------TT-TCG-----------ATGG-TGG-GGAATGACC-CC---CGGTCATTATTCTATGGGAGTCATCATTTTTTTTT
gi|5 : tgaaaacaagACAAGTGTATTTGGAC------TATTGTACA----AGGTAACCTGCTCTTCTATATTC--TGTT-------------------TCTACAGAGTTAT--CAA---AAC--T-GC-A----CTGTGCACTCTGTTGAGTCCGTTTCTATACAGTCATC-ACAACTGC-ACTGTATTAGTGCAAACACATCTTTGTACACATATGG--AATGAAGTATAAAAT-GTAAACTAA-----ATGTTATATGTATTTCATTACCTACACATGTATA-----TCTTTACATATCGTGTTGG---TCA---A-CACCTTTTTCATA-TTAT------A---G-----CA--TTT---TACCTGTTAGACGGGGATCATTTTTCTACGGAAA--TC-TTTTTCTTCAT------GTGTAA-CGCGCAGAAAA-C-TGACCTTTAGCTCTTATTTCTTCAAA------CCA--ATTT---TGCTTCA------G-TT---------GG----AAG---GTCATT------T---------------------------AATGACC-TC---TGGTCATTATTCTATGGGGGTCACTACTCTTCTTTt
gi|6 : TTGTTGAAATAATACTAACAA-------------------AGT------------------ACTTTATTTTAGTC--CGTTCTACACGATGATCACAGGTTCTACATGATGAT--CAC---AGG--T-GC-A----CTG-------TATTAA--CCAT-----TTGA-----T-AAAAGTAC-A-------ATGGCAA------CTTTGTGCACAAAT-GGCAA-AACGTATAAAAT-ATAAACTAA-----AT-CC-----TATTTCGTCAC----------ATA-----TCT---------GT----A-----A---A----------TA-A-ACAT------G----------A--CTT---T---TTTAAGGCATGGGGAATTTTTCTATGAGGG--TCATTTTTTTT-AT------GTATAA-CATGCAGAAAA-C-ATATCCCTGGTTATTTATTTTTCAAAA-TAATTCATTTTTT---TTCTT-----------T---------GA----GTT---GTCATT------TT-TCG-----------ACGC-AGA-AGAATTACT-TC---CAGTCATTATTCTAT-GGGGTCATTGTTTTTCTTT
gi|7 : GTGTGATATATTGATGTT---AAGTACTGTACTTGAATATTTGTTGACTTTCNNNNNNNNNNNNNNNNNNNTA----------GATAG---------AT-------------ATAACTGTGGCAAATCA-------------AAT------------TTC----------AGATCAACGGCCC-GTGTTCA-CATTTAACCGTTACTTAGTCTCTGTAGCGTATT-------------GGGAACTCTAAAAACCAGGCTCTTTATATGTGCATGAAAAGTACATATTTTGTTGAAATAATACTAACAAGTATATTTGGAT------TAGTGTATA----AGGTAACACAATTTACTTTAGTC--CGTT-------------------TCTACACAGTGAT----G---AGT--T-GT-A----TTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ACTGCAA------CTTTGTACACATTTGG--AATAAAGTAT---ATCATAAACT
gi|8 : TC--CGTT-------------------TCTACACA-TAATTTCACTATAAT--TTGCCA----CTG-------TATAAA--CCGT-----TACA-----TAAAAAGTGC-A-------A-TGCAA------ATTTGCACACATAT-----AT----TATAAAAT-A-AAACTAATTGCTATATG-----TATTTCATCCAC--------TATA-----T-TATACATATCGT----AATGTAATGTA-CACCT-TTTTA-ATAAAT------A---G-----CA--TTTTACT---TTTAAGGCAGGGTGCA-TGTTCT-CATGGG---CACTTTTCTTCATGTACAGGTATAATCACGCAGAAAATC-T---CCCTGGGTTCTTTTTC------------------TCT---TTTTTCAG-----G-CT---------------GGC---GTCATT------TTATCT-----------ACGT-AAATAAAAT-ATC-CC---CAGTCGTTATTg
gi|9 : TC--CGTT-------------------TCTACACAGTAAT--CAC---AATATT-GC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGCAA-------AATGCAA------C-TTGTACACATAT-GA-AATAAAGTATGAAAT-ATAAACTAATTGCTATATG-----TATTTCATTACT--------GATA-----TCATTACATATCATATTGA---TCA---A-CTC---TTTT
blockSeqs : T TTT A T A NNNNNNNNNNNNNNNTAGATAGAT T CATAATTATAATAAAAAC A GG CCGTTAC C T T G CTAACGT AAGCTA CG CTACACGATGATCACAGGT TT TAT TAT T C TTAG TGCACTC GT TTCTA GTCAT A A CTGTATT C ACACAT TGGAATG C ATGTTATATG TACACATG GTGAT A ATCAGCACCTTTAAACATCATTTTACGTG GT TAC ACC T G GGAGTCAT A GTACAG T T G T T TTT . GGAGGGGGTGGGGGT TGT TTTTTC A . AA T T . ACG G
blockSeqs : G TTT A A C TAGATAGATGGAT T CGTAATCATAATCAATAC C . . C A T T C AA . . . . T . . . . . . . . . . T . TGGCAAA . TTGCTATATG . . C AATGTAATGTACACCTTTTTAATAAATAG . . . T T AGTCAT A . . . . . A C . GCTGGGGAGGGGGG . . . . A . G . . A
blockSeqs : A T C G C TAGATAGTTAGCT G CGTGGT C . . C T T T C AT . . . . T . . . . . . . . . . T . TGGAATA . TTGCTATATG . . C GTTGGTCAACACCTTTTTCATATTATAG . . . T C GGTTAT A . . . . . T G . GTTGG . . . . A . G . . A
blockSeqs : T . A G N TAGATTGAT G AGAC A . . A T . T C AA . . . . C . . . . . . . . . . A . TGAAATA . ATGCTG . . C ATCAACACTTTTGAATATCATTT . . . A A GGTCAG C . . . . . T T . GCTGT . . . . C . G . . A
blockSeqs : T AAT A . . . G . . T AA . . . . T . . . . . . . . . . T . GAATA . ATGTT . . A ATCAACACTTTTAAATAAA . . . T G GGTCAT A . . . . . T T . ACTGG . . . . C . T . . G
blockSeqs : . . . . . . . . . . C . . . . . . . . . . G . TGG . ATGTT . . A ATTGATCAATAGATTT . . . T T GGTCA A . . . . . T A . GTTGG . . . . T . G . . G
blockSeqs : . . . . . . A . . . . . . . . . . T . ATA . ATGCT . . A TTTTAAGGCAG . . . T T AATCT A . . . . . A T . GCTG . . . . A . G . . A
blockSeqs : . . . . C . . . . . . . . . . C . TAT . ATCC . . . AAATAAACATG . . . T G GGCAC A . . . . . T A . GCTT . . . . A . T . . A
blockSeqs : . . . . G . . . . . . . . . . A . . . ATT . . . . . T A . . . . . . . T G . GGCT . . . . . . . . . A
blockSeqs : . . . . T . . . . . . . . . . . . . T T . . . . . . . T G . TGA . . . . . . . . G
blockSeqs : . . . . T . . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons : CGTGGTANAC****************** ***** ATCAACACTTTTNAATATAGT***************************** GGTCAT** *** GCTGG******************** ***********
originalCons : GTGTGATCTANCGATGTTTTTGAGTACTGTACTTGAATATTTGTTGACTTTCANAA---------------TA----------GATAG-T--G----AT-------------AAAACTGTGGCAAANCACGT----------AAT------------TACGATAAATTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGGCTCTTTAAATGTNCATGAAAAGAACATATTTTGTTGAAATAATACTAACAAGTGTATTTGGAC------TAGTGTATA----AGGTAACACACTTTACTTTAGTC--CGTT-------------------TCTACACGGTGAT--CAC---AAT--T-GC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ANTGCAA------CTTTGTACACATAT-G--AATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----TATTTCATTACC--------TATA-----TCTTTACATNTCGT----A---TCA---A-CAC---TTTTA-A-ATAT------A---G-----TA--CTT---T---TTTAAGGCAGGGGTCATTTTTCTACGNGGG--TCATTTTTCTTCAT------GTATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--NTTT---TTCTTCA------G-CT---------GG----GGG---GTCATT------TT-TCT-----------ACGT-AGA-AAAATGACC-CC---CGGTCGTTATTCTACGGGGGTCATTATTCTTCTTTA
finalCons : GTGTGATCTANCGATGTTTTTGAGTACTGTACTTGAATATTTGTTGACTTTCANAA---------------TA----------GATAG-T--G----AT-------------AAAACTGTGGCAAANCACGTGGTANAC------------------TACGATAAATTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGGCTCTTTAAATGTNCATGAAAAGAACATATTTTGTTGAAATAATACTAACAAGTGTATTTGGAC------TAGTGTATA----AGGTAACACACTTTACTTTAGTC--CGTT-------------------TCTACACGGTGAT--CAC---AAT--T-GC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ANTGCAA------CTTTGTACACATAT-G--AATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----TATTTCATTACC--------TATA-----TCTTTACATNTCGTATCAACACTTTTNAATATAGT-----------------------------TA--CTT---T---TTTAAGGCAGGGGTCATTTTTCTACGNGGGTCAT--TTTTCTTCAT------GTATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--NTTT---TTCTTCAGCTGG--------------------GGG---GTCATT------TT-TCT-----------ACGT-AGA-AAAATGACC-CC---CGGTCGTTATTCTACGGGGGTCATTATTCTTCTTTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000 7777777777777777777 2222222 1111111 111111 2222222222222222222 1111111 11111 1111111 111111 222222222 222222222222222 11111111 11111 333333333333333333333 555555555555555555555555555 2222222222222222222222222 111111 11111111111
lowQualScore : 1 777 5 8 0 1 55555555555555555555555555555555555555555555555555555555 0 1 1 6666666666666666666 1 77 1111111 2 6 7 1 0 5555555 111111 0 44 3333333333333333333 44 555 444 3 3 6666 0000000 0 55 44444 99999 3 3 1111111 4 000000 555555555 3 555555555555555 44444444 00000 0 2 111111111111111111111 1 4 666666666666666666666666666 55 1 2 88888888 1 999999 3 0 3 3 3 2 666 555 3333333333333333333333333 666 000000 3 77777777777 44 3 5 3 555 4
lowQualScore : . ... . . . . ........................................................ . . . ................... . .. ....... . . . . . ....... ...... . .. ................... .. ... ... . . .... ....... . .. ..... ..... . . ....... . ...... ......... . ............... ........ ..... . . ..................... . . ........................... .. . . ........ . ...... . . . . . . ... ... ......................... ... ...... . ........... .. . . . ... .
lowQualScore : 0 000 6 2 6 0 44444444444444444444444444444444444444444444444444444444 8 0 4 0000000000000000000 3 99 7777777 5 6 3 3 1 8888888 000000 1 22 8888888888888888888 22 444 444 1 1 5555 0000000 1 00 11111 11111 6 6 8888888 5 555555 555555555 6 999999999999999 55555555 00000 9 4 999999999999999999999 0 0 111111111111111111111111111 00 3 3 66666666 1 666666 3 2 6 6 1 5 333 444 7777777777777777777777777 444 555555 6 33333333333 88 6 9 3 888 4
consensus : GTGTGATCTANCGATGTTTTTGAGTACTGTACTTGAATATTTGTTGACTTTCANAA---------------TA----------GATAG-T--G----AT-------------AAAACTGTGGCAAAGCACGT--AAT--------AN----ACTACGATAAATTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGGCTCTTTAAATGTNCATGAAAAGAACATATTTTGTTGAAATAATACTAACAAGTGTATTTGGAC------TAGTGTATA----AGGTAACACACTTTACTTTAGTC--CGTT-------------------TCTACACGGTGAT--CAC---AAT--T-GC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ANTGCAA------CTTTGTACACATAT-G--AATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----TATTTCATTACC--------TATA-----TCTTTACATNTCGT----A---TCA---ACA-C--TTTTNA-A-N--AT---AG----TT--AC-----TTTTT--TAAGGCAGGGGTCATTTTTCTACGNGGG--TCATTTTTCTTCAT------GTATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--NTTT---TTCTTCA------G-CT---------GG----GGG---GTCATT------TT-TCT-----------ACGT-AGA-AAAATGACC-CC---CGGTCGTTATTCTACGGGGGTCATTATTCTTCTTTA
Reference ( family-1165 ) : GTGTGATCTANCGATGTTTTTGAGTACTGTACTTGAATATTTGTTGACTTTCANAA---------------TA----------GATAG-T--G----AT-------------AAAACTGTGGCAAANCACGT--GGT--------AN----ACTACGATAAATTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGGCTCTTTAAATGTNCATGAAAAGAACATATTTTGTTGAAATAATACTAACAAGTGTATTTGGAC------TAGTGTATA----AGGTAACACACTTTACTTTAGTC--CGTT-------------------TCTACACGGTGAT--CAC---AAT--T-GC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ANTGCAA------CTTTGTACACATAT-G--AATAAAGTATAAAAT-ATAAACTAA-----ATGTT-----TATTTCATTACC--------TATA-----TCTTTACATNTCGT----A---TCA---ACA-C--TTTTNA-A-T--AT---AG----TT--AC-----TTTTT--TAAGGCAGGGGTCATTTTTCTACGNGGG--TCATTTTTCTTCAT------GTATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--NTTT---TTCTTCA------G-CT---------GG----GGG---GTCATT------TT-TCT-----------ACGT-AGA-AAAATGACC-CC---CGGTCGTTATTCTACGGGGGTCATTATTCTTCTTTA
gi|1 : TGTAACCTAGCGGTGTTTTTG-----T-TAACTGAATATTTGTTGACTTTCAAAA---------------TAGATACATGTAGATAG-T--GCTCTATTGTACCCAGTGAGAAAACTG--GCAAAGCACATTTAAT--------ATCAAAACTACGATAAATTACAGATCAAC--CCCTATGTTCGGCATTTAG-------TTAACCTCTGTAGCGTATTCAATCAAAGTAATGAGAGTCCTAATAACTAGGGTCTTTAAATGTACACAAAAAGAACATATTTTGCTGAAATAAAACTAACATGTGTATTTGGAC------TAGTGTATA----AGGTAACACATTCGACTTTGGTC--CGTT-------------------TCTACACGATGAT--TAC---CAT--T-GC-A----CTG-------TA
gi|1 : ACACTCCACTTTAGTT--TGTT-------------------TCTACACAGTTAT--CAG---AAT--T-GC-A----CTG-------TATTAA--CCGTGC---TGTT-----T-AGAAGTGC-A-------AGTGCAA------TTTTGCACACATATGG--AATAAAGTATAAAAT-ATAAACTAA-----ATGCTGTATGTATTTCATAACC--------TTTA-----TCTTTACATGTCGTATTGA---TCA---ACA-CTTTTTTAA-A-A--AC---AGCATTTT--AC-----CTTTT--TAAGGCAGGGGT-A------------------ATTTTTCTTCAT------GTATAA-CACGCAGcactccactttagtttgtttctacacagttatcagaattgcactgtattaaccgtgctgtttagaagtgcaagtgcaattttgcacacatatggaataaagtataaaatataaactaaatgctgtatgtatttcataacctttatctttacatgtcgtattgatcaacacttttttaaaaacagcattttacctttttaaggcaggggtaatttttcttcatgtataacacgcaggggggtcatttcccggtcattattctacggaggtcattattcttcttta
gi|1 : tgtaacctagcggtgtttttgttaactgaatatttgttgactttcaaaatagatacatgtagatagtgctctattgtacccagtgagaaaactggcaaagcacatttaatatcaaaactacgataaattacagatcaacccctatgttcggcatttagttaacctctgtagcgtattcaatcaaagtaatgagagtcctaataactagggtctttaaatgtacacaaaaagaacatattttgctgaaataaaactaacatgtgtatttggactagtgtataaggtaacacattcgactttggtccgtttctacacgatgattaccattgcactgtTTTTTTAAAAA-CAG--CA--TTTTACCTTTTTAA------GGC-----------A----GGG---GTAATT------TT-TCTTCATGTATAACACGC-AGG-GGGGTCATTTCC---CGGTCATTATTCTACGGAGGTCATTATTCTTCTTTAgggggtcatttcccggtcattattctacggaggtcattattcttcttta
gi|10 : tgtaacctagcggtgtttttgttaactgaatatttgttgactttcaaaatagatacatgtagatagtgctctattgtacccagtgagaaaactggcaaagcacatttaatatcaaaactacgataaattacagatcaacccctatgttcggcatttagttaacctctgtagcgtattcaatcaaagtaatgagagtcctaataactagggtctttaaatgtacacaaaaagaacatattttgctgaaataaaactaacatgtgtatttggactagtgtataaggtaacacattcgactttggtccgtttctacacgatgattaccattgcactgtacactccactttagtttgtttctacacagttatcagaattgcactgtattaaccgtgctgtttagaagtgcaagtgcaattttgcacacatatggaataaagtataaaatataaactaaatgctgtatgtatttcataacctttatctttacatgtcgtattgatcaacacTTAAAATGTTCATCAAAAGAACATATTTGGTTGAAATAATACTGACAGGTGTATTTGGACTAACGTTAGTGTACAAGCTAGGTA--ACACTTTGCTTTAGTCCGCGTT-------------------CCTACACGGTGAT--CAC---AGT--T-GC-A----TTG-------T
gi|11 : G--TAATTTTTCTTC------------------GTAGAAAA-A-TGACCGCTTGGTCTTTTTTCTTCAAAA-TTATCCA--CTTT---TTCTTCA------G-TT---------GG----AGGTGTGTAATT------TG-TCT-----------TCGT-AGA-AAAA--ACA-CC---C------------ACGGGGTTAATTAATCTTCTTTA
gi|12 : tGTGTGATCTATTGATGTTT--GAGTACTTTACTTGAATATTTGCTGACTTTCAAAT---------------TA----------GATAGATG-G----AT-------------AAAACTTTGGCAAATCACAT--AATTATAATAAAA----ACTACGATAGATTGAAAATCAAT--CC
gi|13 : ACGCAGAAAA-C-TGACCCCTGGGTCTTTTTGCTTCAAAA-TAAACCA--GTTT---TTCTTCA------G-CT---------GT----GTG----TCATT------TT-TCT-----------ACGT-AAA-AAAATTACT-CC---CAGTCGTTATTCTACGGGGGTCATTATTCTTC
gi|14 : --------AG----ACTACGATCAACTGAAGATCAAC--CCCTGTGTTCGGCATTTAG-------TTAATCTCTGTAGCATA--CACTCAAAGTATTGAGAGTTCT-AAATCCAACCTCCTTAAATGTACATGAAAAGAA
gi|15 : aatcaGTATAAAAT-ATAAACTAA-----ATGCTG----TATATCATTATC--------TTTAGTGATTTTTTACAGATCTT----A---TTG---A---------TCA-A-T--AG---AT----TTT-AC-----TCTTT--TAAGGCAGGGGTCATTTTTCTACt
gi|16 : CTTCAT------GTATAA-CATGCAGAAAA-C-TGACTCATGGGTATTTATTTTTCAAAA-CAATCCA--TTTT---TTCTTCA------G-CT----------G----GGG---GTCATT------AT-TCT-----------ACG
gi|16 : A-T--TTTTCA-A-A--AC---AA----TCC-AT-----TTTTTCTTCAGCTGGGGGTCATTATTCTACGGGAG--TCATTATTCTggagtcattattct
gi|16 : cttcatgtataacatgcagaaaactgactcatgggtatttGGTCATTATTCTACGGGAGTCATTATTCT
gi|17 : cttcatgtataacatgcagaaaactgactcatgggtatttatttttcaaaacaatccattttttcttcagctgggAT--CAC---AAC--T-GC-A----CTA-------TAATAA--CCGT-----TACA-----T-AAAAGTGC-A-------ACTGC-A------TTTTGTGCACTTAT-G--G---------------------TAA-----ATGTT-----TTTTTCATTACC--------TATA-----TCTGTACATCTCGT----A---T
gi|18 : at-TAATCCA--TTTT---TTCTTCA------A-CT---------GG----AGG---GCCATT------TT-TCT-----------ACGT-CGA-AAAATGACC-CC---CGGTCATTATTTTACGGGGGTCATAATTCTT
gi|19 : TATTATAGTT--CGTT-------------------TCTACACGGTGAT--CAC---AAT--T-GC-A----CTG-------T---------GT-----TATA-----T-GATAGTGC-G-------ATTGCAA------TTTTGTACAtac
gi|2 : taatgaataatacGTGTGATCTAGCGATGTTTTTGAGTACTATACTTGACTATTTGTTGACTTTCACAA---------------TA----------GAT---T--G----AT-------------AAAACTGTGGCAAAGCACGT--GGT----------------TATAATCAATTAAAAATCAAC--CCCTGTGTTCGGCATTTAG-------TTGATCTGTCTGGCGTATTCAATCAAAGTATTGAAAGTTCTAAAACCCACACTTTTTAAATGTTCATGAAAAGAACATAT--------------ACTAACAAGTGTATTTGGAC------TAGTGTATA----AAGTAACACACTCTACTTTAGTC--CGTT-------------------TCTTTACGGTGAT--CAC---ATC--T-GC-A----CTA-------TAATAA--CCGT-----TACA-----T-AAAAGTGC-G-------ATTGCAA------CTTTGTACA-----------TAAAGTATAAAAT-ATAAACTAA-----ATGTT-----T-TTTCATTATC--------TATA-----TCTTTACATCTCGT----A---TCA---ACA-C--TTTTAA-A-T--AA---A------T--AC-----TTCTT--TAAGGCAGGAGTCATTTTTCTACGTGGG--TTATTTTTCTTCAT------GTATAA-CAAGCAAAAAA-C-TGACTCCTGGGTCTTTTTTCTTCAAAA-TCATCCA--ATTC---TTCTTTA------G-CTGGGGAGGGGGG----GGG---GTCATT------TT-TCT------------CGT-CGA-AAAATGACC-CC---TAATCATTATTCTACGGGGTTCATGATTTTTCTTTA
gi|20 : CGT----A---TCA---GCA-C--CTTTAA-A-C--AT---CA----TTTTACGTGTACTTTT--TAAGGCAGGG-TCAATTTTCTACACGGGAGTCATTTTTCTTCAT------GTA
gi|21 : CAGGGGTAATTTTTCTACGAGGG--TCA------------------------------GAAAA-C-TTACCCCTGGGTCTTTTTTCTTCAAAA-TAATCTA--TTTT---TTCTTCA------G-TT---------G
gi|22 : aTATAA-CACGCAGAAAA-C-TGACCCCTGGGCCTTTTTTCTTCAATA-TAAATCA--AGCT---TTCTTCA------G-CT---------G
gi|23 : A-AAATTGACC-CC---CGTTT-TTATTTTACAGGGATCATTAGTATTCTTTAtagt
gi|24 : ctT--TAAGGCAAGGGTCATTTTTCTACGGGGG--TCAGTTTTCTTTCT------GTATAA-cag
gi|25 : ACACTTTACTTTAGCC--CGTT-------------------TCTACACGGT
gi|26 : tcacaattgcactgt-CC---CGGTCGATATTCTACGGGGGCCAGTATTCTTCTT
gi|3 : GTGTCATCTAACGATGTTTTTGCGTACTGTACTTGACTATTTGTTGACTTTTACAA---------------TA----------GATAG-TTAG----CT-------------AAAACAGTGGTAAAGCACGT--AATCATAATCAAT----ACTACGATAAATTGAAGATCAAC--CTCTGTGTTCGGCATTTAC-------TTAATCTTTTTAGTGTATTCAATCAAAGTATTGAGAGTTCTAAAAACCAGACTCTTCAAATGTTCATGAAAAGAACATATTTTGTTGAAATGATACTAACCAGTGTAT---GA--------GGTACAT-------GTAACACACTTTACTCTAGTG--CGTT-------------------CCTACACGGTGA----------------------------------------------------ATA-----C-GAAAGTGC-A-------AATGCAA------CTTTGTACACATA--G--AATAAAGTATAGAAT-ATAAACTAA-----A--TT-----AATGTTATTAAA--------TAAA-----AGTTT---TCT------------------------TTTTTA-A-G--GCAGGAG----T----C-----TTTTT--TTCTACGGGAGTCATTTTCCTCCATG-----------------T------ATATAA-CACGCAGAAAA-C-TGACCCCTGGGTCTTTTTTCTTCAAAA-TAATCCA--GTTT---TTCTTCA------G-CT----------T----GGG---GTAATTTTTTTCTT-TCT-----------ACGTAAGA-AAAATTACC-CCACGCGGTCGTTATTCCACGGTGGTCATTATTCTTCTTTA
gi|4 : --------AA----ACAAGGATAAGTCGAAGACCAGC--CCTTGCGTCTGGCGCTTAG-------TTAATATCTGCAGCAT-TGAAATCAAATTATTTAGAGTTCGAAAAACCAGGCTCTTTAAATGT-------------ATAT------GAAATGATACTAACAAGCGAATTTTAAC------TAGTGTATA----TGGTAACACACTTTACAAAAGTC--CGTT-------------------TCTACACAATGAT--CAC---AGA--T-GC-ATTAGCTT-------TATCAA--CTGT-----TACA-----T-AAACGTGC-A-------ATTGCAA------CATT------------------AAGTGTAAAAT-ATAAACTAA-----ATGCT------ATTTCGTTACC--------AATA-----TCTTTACATCTCGT----A---TCA---ACA-C--TTTTGA-A-T--AT---CATT--TT--AC------TTTT--TAAGGCAGGAGTTAT-----TATGTA---------------CAT------G--TAA-CATGCAGAAAA-CGTG-CCCCTAAGTCTCCTTTCTTAAAAATTAATTCA--GTTC---TTCTTCAGGAGGGG-GT---------GGGGGTGGG---GGCATT------TT-TCG-----------ATGG-TGG-GGAATGACC-CC---CGGTCATTATTCTATGGGAGTCATCATTTTTTTTT
gi|5 : tgaACAAGTGTATTTGGAC------TATTGTACA----AGGTAACCTGCTCTTCTATATTC--TGTT-------------------TCTACAGAGTTAT--CAA---AAC--T-GC-A----CTGTGCACTCTGTTGAGTCCGTTTCTATACAGTCATC-ACAACTGC-ACTGTATTAGTGCAAACACATCTTTGTACACATATGG--AATGAAGTATAAAAT-GTAAACTAA-----ATGTTATATGTATTTCATTACCTACACATGTATA-----TCTTTACATATCGTGTTGG---TCA---ACA-CCTTTTTCATATT--AT---AGCATTTT--AC-----CTGTT----AGACGGGGATCATTTTTCTACGGAAA--TC-TTTTTCTTCAT------GTGTAA-CGCGCAGAAAA-C-TGACCTTTAGCTCTTATTTCTTCAAA------CCA--ATTT---TGCTTCA------G-TT---------GG----AAG---GTCATT------T---------------------------AATGACC-TC---TGGTCATTATTCTATGGGGGTCACTACTCTTCTTTt
gi|6 : TTGTTGAAATAATACTAACAA-------------------AGT------------------ACTTTATTTTAGTC--CGTTCTACACGATGATCACAGGTTCTACATGATGAT--CAC---AGG--T-GC-A----CTG-------TATTAA--CCAT-----TTGA-----T-AAAAGTAC-A-------ATGGCAA------CTTTGTGCACAAAT-GGCAA-AACGTATAAAAT-ATAAACTAA-----AT-CC-----TATTTCGTCAC----------ATA-----TCT---------GT----A-----A---A---------TAA-A-C--AT---G---------AC-----TTTTT--TAAGGCATGGGGAATTTTTCTATGAGGG--TCATTTTTTTT-AT------GTATAA-CATGCAGAAAA-C-ATATCCCTGGTTATTTATTTTTCAAAA-TAATTCATTTTTT---TTCTT-----------T---------GA----GTT---GTCATT------TT-TCG-----------ACGC-AGA-AGAATTACT-TC---CAGTCATTATTCTAT-GGGGTCATTGTTTTTCTTT
gi|7 : GTGTGATATATTGATGTT---AAGTACTGTACTTGAATATTTGTTGACTTTCNNNNNNNNNNNNNNNNNNNTA----------GATAG---------AT-------------ATAACTGTGGCAAATCA-------------------------------AATTTCAGATCAACGGCCC-GTGTTCA-CATTTAACCGTTACTTAGTCTCTGTAGCGTATT-------------GGGAACTCTAAAAACCAGGCTCTTTATATGTGCATGAAAAGTACATATTTTGTTGAAATAATACTAACAAGTATATTTGGAT------TAGTGTATA----AGGTAACACAATTTACTTTAGTC--CGTT-------------------TCTACACAGTGAT----G---AGT--T-GT-A----TTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGC-A-------ACTGCAA------CTTTGTACACATTTGG--AATAAAGTAT---ATCATAAACT
gi|8 : TC--CGTT-------------------TCTACACA-TAATTTCACTATAAT--TTGCCA----CTG-------TATAAA--CCGT-----TACA-----TAAAAAGTGC-A-------A-TGCAA------ATTTGCACACATAT-----AT----TATAAAAT-A-AAACTAATTGCTATATG-----TATTTCATCCAC--------TATA-----T-TATACATATCGT----AATGTAATGTACACC--TTTTTA-A-TAAAT---AGCATTTT--AC-------TTT--TAAGGCAGGGTGCA-TGTTCT-CATGGG---CACTTTTCTTCATGTACAGGTATAATCACGCAGAAAATC-T---CCCTGGGTTCTTTTTC------------------TCT---TTTTTCAG-----G-CT---------------GGC---GTCATT------TTATCT-----------ACGT-AAATAAAAT-ATC-CC---CAGTCGTTATTg
gi|9 : TC--CGTT-------------------TCTACACAGTAAT--CAC---AATATT-GC-A----CTG-------TATTAA--CCGT-----TACA-----T-AAAAGTGCAA-------AATGCAA------C-TTGTACACATAT-GA-AATAAAGTATGAAAT-ATAAACTAATTGCTATATG-----TATTTCATTACT--------GATA-----TCATTACATATCATATTGA---TCA---ACT-C--TTTT