lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 1 5555555 11111 1 22222 111 11111111 777777777777 1 111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11 2 00000000000000000000000000000000000000000000000000000000000000000000000000 2 22222 1 2 33333333 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3333333 2
lowQualScore : 77 0 2222222 8 33333 1 5 0 3 77777 3 444 33333333 3 999999999999 3 4 3 8 55 888 6 55 0 6 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 6 11 1 55 3 88888888888888888888888888888888888888888888888888888888888888888888888888 0 88888 8 6 5 2 44444444 3 3 0 6 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 4444444 55 0 6 6 6 6
lowQualScore : .. . ....... . ..... . . . . ..... . ... ........ . ............ . . . . .. ... . .. . . ..................................................................................................................................................................................................................... . . .. . .. . .......................................................................... . ..... . . . . ........ . . . . . ...................................................................................... . ....... .. . . . . .
lowQualScore : 00 0 5555555 8 33333 0 7 4 3 11111 7 111 22222222 3 777777777777 6 1 6 9 00 666 5 55 7 9 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 7 88 0 77 7 88888888888888888888888888888888888888888888888888888888888888888888888888 0 22222 8 5 0 8 00000000 5 3 7 0 7 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0000000 55 0 0 0 0 0
consensus : NNNATGGTACNTAT-AC----CGATTCTGC---ACCGCGCGAT-ACGGGTGACGTCACAA----TAGCCGATATCAACGACCG--------GTCCG-AAAACC-TATT--A--C-CATA-TCAGACCGG-CGTGCAAAA--ATG-CATNTCAA--TCCGGAAATTACGTATTC---------GCTCG-T--AA--ACAA-TC-AA-CGTA----T-CAAA---GN--------TT---TT-ACCATGGTNAA-T-CAA-GT-TT-A-GTTT--TTAC----TGT-A-GTA---AATA-AATGTA----TG-AGA--TTTT-----ACTATA---GTTTATNATAAT-TA------AT--C---TAT----------------GTATCGA-AG-NTTTACCATTACAGTAAATC-AATGTAGCCAN-GT--------ACCTTGGCTTTTACCAGATAANATCACTGTATCGAGC-TTTTA--TA---CT---TAGTAAAGTAA--TGTATCAAATATTNCTTGATGTACCTTTAAAATGCG--AAAA-GTAAC-CCGCATATGAT----AA----AAANAA--CATNTTA-AAGATCGG--C-----CTCATACCATATCNAAAGACGACCAT----TTAACACTATCTATACACCGTTCGTGTGCAATATTTTGAAGNNTGAAAAAAGTGCAATATATGATAA
Reference ( gi|1 ) : TGGATGATATATAT-AC----C--TGCTTC---ACTGCACGAT-ATGGATGACGTCTCAT----TAGCCAATATGAGCGACCG--------GTCCG-AAAACCATATTTAATTC-CATA-TCAGACCGG-CGTGCTAAA--ACC-CATTTCAA--TCCGGAAGTTACGTCGTC---------GTTTG-T--GAC-ACAA-TC-AC-CGTA----T-CAAA---GA--------TT---TT-ACCATAATAAA-T-CAATGTGTTGATGTTT--TTAC----TGT-A-GTA---AA-A-AATGTA----TG-AGA--TTTT-----ACTATA---GTTTACCATAGT-TA------AT--C---TGT----------------GTATCAA-AG-CTTTACCATTATAGTTAATCTAAT-T-GCCAGAGTCCCCCCCCCCCTT--TTTCTACCAGCTTTTATCATTATATAAAGTGTTTTATTTA---CTT--TAGTAAA-TAA--TTCATCAAATATTCCTTTATGTACCTTAAAAATGCG--GAAA-GTAAC-CCGCGTGTGAT----AA----AAATGA--TATTTTATAAAGTCAG--C-----CTT----CATTTCAAAATAAGAAAATAAAATCGAAACTA-----ATGCCGTTCGTATGCAATATTTTCAAGCATG-AAAGAGTGCAGTATACGACAAAT
gi|2 : ATGATA-ATATGACTGTGC--TGATTCCGCACCTCACAAT-ATGAGTGATGTCACAA----TAGCTCACATCAACGACTG--------GTCCA-AAAGCC------------CATA-TCAGAATGG-CGTGCAAAA--GTG-CATTTCA-------GAAATTAC-------------------------AT-ATAATTC-ACTCGTAACATT-CAAA---GT--------TT---TA-ACCATGGTAAA-TCCAA---------GTTT--TTAC----CGT-A-TTA---AATC-AATGTA----TGAAAA--TTTTTAACAATTATAATGGTTAATTATAAT-CA------AT--G---TATCACAGTTATTACCACAGTATCGA-AG-ATTTACCATTACAGTACATC-AAT-----CAT-GT--------ACCTTGGTTTTTACCA-----CACCACTGTATCAAGCTTTTTA-CCA---C-----AGTAAAGTAATGTTTAT--AATATTCCTTGATATACCAT-AAAATGCGAAAAAA-GTAAC-CTACATATGATTAAAAA----GAACAA--CATTTCATAAAATCAGATCCCAGACTC----CATATCAAA
gi|14 : tatacATAGTACTTGT-AC----CAATTCTAC---ACTGTGCAATTATGGATGTCATCACATGCAATTGCCAATATCAACGACCA--------GTCCG-AAAACCtttt
gi|19 : atcatatactttTAT-AC----CAATTCTGC---ACCTAGCGAT-ACGAGTGACTTCACAA----TAGACGAGACCAGCGACCT--------GTCTGAAAAACCTTATcaatgtgcaaaaat
gi|21 : TAT-GC----CGATTCTGC---ACTGCGCGAT-TCGGATGACG--TCATGA--TACCCGATAT
gi|12 : CTAC---ACTGTGCGAT-TCAAATGACGTCACAA----TTGCAGATATCAGCAACTG--------ATACG-A------------------ATA-TTATACTGG-TGTGCAAAA--ATG-TATCTCAA--ACCAGAAATTATGTATTC---------GCT
gi|18 : tatattacaatactgcattgattCTGC---ACCGCACAAT-ATGGATTACATAACAA----TAGCCAATATCACCGATCG--------GTCcata
gi|5 : atatgcttggtaatgattttgtcgattAT-ACAGGTGACATCACAA----TAGCCGATATCAACGACCGGTGTCCCAGTCCT-AAAACC-CAT---ATCG-CATT-TCAGACTTA-CGTGCAAAA--ATG-CA-TAAAA--TAGGAAACTTATG----C---------ATTTGCT--CATAACAA-TC-AA-CGTC----T-C-AA---TA--------TT---TTAACCAT-ATGAA-T--------TTAA-GTTT--TTAC----CGT-A-GTA---AATC-AACGTG----TG-AGA--------------ATT---G-TTATCATTGT-TA------A---------T----------------GTGTC---AGTTTTTACCAtaga
gi|8 : actgt----TAGCCGGTATCACCGAACG--------GTCCG-AAACCCATATT-----C-CATA-ACTGACCGC-CGTACAAAA--ATG-CATATCAA--TTCAGAAATGACGTATTC---------GCCAA-T--A---AGAA-TC-AA-CATA----T-CAAC---GT--------TT---AA-ACCATGGTTAA-T-AAAAGTTTT----TTT--TTAC----TGT-A-a
gi|9 : aAGCTGATGTCAACGACCT--------GTCAA-AAAACCCTAT------CGCTTA-TCAGACTGA-------AAA--ACTGCATATCAA--TCCGGAAATTACGTGTTT---------GCTCG-T--A---ACAA-TC-AA-CATG----T-TAAGTTTGAACCATGGTTT---TT-ACTGTAGTCAG-T-CAA-ATGATAATTTTTAATTACAAATTGTGA-ATT---AC-A-AAT-TA----TG-AAA--TATT-----ATTGTA---acaccgaaccaaagcttgataatcaaaaaccatcacaataatacttacaa
gi|11 : ATATG---GACCA--------GTG-G-AAAATCACATTTCA----CGTG-TCAGACCAG-TGTGCAAAAATACA-CAGTTCA
gi|3 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacGACCG--------TTCCG-AAAA----ACCTCATCA-CATA-TCGGACCAG-TGTGCAGAA--ATG-TGTATCAA--TCCGGAAATTACGTGTTC---------ACTTG-T--A---ACAG-TCAAC-CTTA------CAAA---GA--------TT---TT-ACCATGGTAAA-T-TAGGGT-------TTT--TT-C----TGT-A-GTATTTAATA-AATGTACATTTG-AGAATTTTT-----ACCAAA---GTTTAATA-AATATA------AT--T---AAT----------------GTATCAA-AA-CTTcgtatcagaccagtgtgcaaaa
gi|7 : gctgatatcaatttatGACCG--------GTCCG-CCAACCCTATTC----C-CATAATCAGAC-GG-CTCGCAAAA--ATG-CATATCAAAGTATGGAAATGATGTT-TCAGCTCATGGGCTCA-TAGGAG-ACAA-T------ATA----T-CAAA---G---------TT---TT-A---------A-T-CAAT-----------T--TTAC----TGT-ACGTA---GT-A-AATC-----------A--TTAT-----ACAATA---GTTTATAATAAT-TA------ATA-CACATGT----------------ATATTAATAG-CTTTACCgccgctgtatcgcagat
gi|15 : gtcgatatcaccttctG-AAAATCCTTGTTAA--C-C-TA---AGACTGTTCGTGC-AAA--ATG-CATACCAA--TCCGAAAATTACGTATTC---------G-GTG-T--AAC-AT---TC-AA-CGTA----CGCAAA---AG--------TTCTCTT-ATCATtt
gi|17 : -AAAACCATATT-----C-CATA-TCAGACCGA-CATGCAAAA--ATG-CAATTCAA--TTTGGAAATTATGTATTT---------GCTTG-T--A---AGAA-TC-AA-CATA----T-Cggcatt
gi|16 : ATTG-CATA-TCAGACAGG-CATGCAAAA--ATC-CATATCAA--TCTGGAAATTAGGTATTC---------GCTCA-T--A---ACAA-TC-AA-CATA----T-TAAA---G---------TT---TT-AC--TAAT
gi|6 : aatccatTTG-T--AGT-A-AA-TC-AA-TGTA----G-CTAG---TC--------TT---TT-ATCA-GATAAAAT-CATTGTATTGAGGTTT--TTAC----TAT-A-GTA---AA-GTAATGTA----TG-AAA--TGTT-----TCTcatgg
gi|4 : aaagatttacca---AA-A-CATGTA----TG-AGAATTTTT-----ACCATA---GTTGATAATAAT-TATTGTATATTTC---TAT----------------GTATCGA-AG-ATTTACCATTACAG-TAATCTtgatgtacttctaaaatgcaaagaaatatcagctccaggactccgtatcaaattttaaaacccaacgtttaactccataccgttcgtgtacaatttgaagcctgaaaaaagtgcaatatatgataa
gi|6 : ctaagtatacaacgttttAA-AG-ATTTACCATTGTAGTAAATC-AATGTAGCTAG---------------T--CTTTTATCAGATAAAATCATTGTATTGAG-GTTTT---TA---CTA--TAGTAAAGTAA--TGTATGAAATGTTTCTTGATGTACTTCTAAAATGC----AAA-GAAAgtaaatcaatgtacctatataggtttaccaaagaaaatcattgtatgaaagattgcttgacgtgcattttaaaaaaaagaacttaaaacattttataaaatcgtacgtatcaaattttaaaaaccat
gi|10 : ATCACTAT-TAAGGT-TTACATGTATAACTTGATAGGAAA-TAA--TGTATCAATTATTGCTTGATGTACCTTTAAAATGCG---------AAC-CCACATGTGAT----AA----AAAAAAATCATCTT------TCGG--A-----CTTATACCATATCTAAAGACGACCAT----TTAACACTATCTATACACTGTTCGTATGCAATATTT--AAGGATG-AAAtatcagctccaggactccgtatcaaattttaaaacccaacgtttaactccataccgttcgtgtacaatttgaagcctgaaaaaagtgcaatatatgataa
gi|13 : aaA-TAA--T--ATCAAATATTGCTTGATATACCTTTAAAGTGCG--AAAAGGTAACTCCGCATATAAC----AAAAAGAAATAA--CAAATTAAAAGATCAG--C-----CTa
gi|6 : taccat-----ATACCGTTCGTGTACAA---TTTGAAGCCTGAAAAAAGTGCAATATATGATAActgaactccattttaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TATGATTATGTCGATTTTGTACTGTGCAATGCAGATGACATCATAGTAACCAAT
Alignments
lowQualScore : 1111 1111 11111111 22222222222222222 333333333333 11111 77777777777777 1111 1111 11111111111 111 666666666666666666666666666666666 3333333 1 999999999999999999999999999 11111 11 5555555555555555 11 11 1111111 2222222222 11 333333333333333333333 44444444 22222222222 11
lowQualScore : 1 1 5 2222 0 3333 11111111 2 2 66666666666666666 2 3 2 44 1 3 44 0 3 6666 3 1 333333333333 2 2 4 2 5 22222 9999 0 8 44444444444444 5 4444 6 1 2222 5 88888888888 2 000 1 1 1 5 999999999999999999999999999999999 666 66 2222222 0 999999999999999999999999999 33333 1 3 66 66 2222222222222222 33 6 0 8 1 0 11 0 2222222 1 1 5555555555 1 11 22 333333333333333333333 1 3 6 22222222 22222222222 0 7 44 22 7
lowQualScore : . . . .... . .... ........ . . ................. . . . .. . . .. . . .... . . ............ . . . . . ..... .... . . .............. . .... . . .... . ........... . ... . . . . ................................. ... .. ....... . ........................... ..... . . .. .. ................ .. . . . . . .. . ....... . . .......... . .. .. ..................... . . . ........ ........... . . .. .. .
lowQualScore : 0 7 0 5555 8 1111 22222222 9 9 44444444444444444 9 5 9 22 0 3 66 2 6 7777 6 2 222222222222 1 4 0 0 3 33333 4444 1 6 66666666666666 7 8888 7 4 1111 7 77777777777 4 000 7 0 4 7 666666666666666666666666666666666 555 77 5555555 0 222222222222222222222222222 00000 0 2 22 55 0000000000000000 88 5 8 0 0 8 00 8 8888888 4 8 6666666666 0 00 00 999999999999999999999 0 7 7 77777777 33333333333 7 3 00 00 3
consensus : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCG--------GTCCG-AAAA-CC--T-AT-T--N--C-CATA-TCAGACCGG-CGTGCAAAAAT--GCATATCA-A--TCCGGAAA-TTACGT---ATTC-GCTCGTAA-AC-------AATCAACGTAT-CAAAGTTT---TNAC----CATGGTAAAT-CAA---GTT-A-GTTTTTACCGTA-GTA---AAT-AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTATNATAAT-TA------AT--C---TAT----------------GTATCGA-AG-NTTTACCATTACA-------GTAAATC-AATGTAGCCA-TGT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATTAAGN-TTT-----TA--TA-C-TATAGTA--AAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCG--AAAA-GTAAC-CCGCATGTGAT----AA----AAATAA--CATCTT-ATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
Reference ( family-1159 ) : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCG--------GTCCG-AAAA-CC--T-AT-T--A--C-CATA-TCAGACCGG-CGTGCAAAAAT--GCATNTCA-A--TCCGGAAA-TTACGT---ATTC-GCTCGTAA-AC-------AATCAACGTAT-CAAAGNTT---TTAC----CATGGTNAAT-CAA---GTTTA-GTTTTTACTGTA-GTA---AAT-AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTATNATAAT-TA------AT--C---TAT----------------GTATCGA-AG-NTTTACCATTACA-------GTAAATC-AATGTAGCCA-NGT--------ACCTTGGCTTTTACCAGATAANATCACTGTATCGAGC-TTT-----TA--TA-C-T-TAGTA--AAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCG--AAAA-GTAAC-CCGCATATGAT----AA----AAANAA--CATNTT-A-AAGATC-GGCCTCATA--CCATATCNAAAGACGACCA---T----TTAACACTATCTATACACCGTTCGTGTGCAATATTTTGAAGNNTGAAAAAAGTGCAATATATGATAA
gi|1 : ATGATATATATACC--TGCTTCACTGCACGAT-ATGGATGACGTCTCA----TTAGCCAATATGAGC----GACCG--------GTCCG-AAAA-CCA-T-AT-TTAATTC-CATA-TCAGACCGG-CGTGCTAAAAC--CCATTTCA-A--TCCGGAAG-TTACGT---CGTC-GTTTGTGACAC-------AATCACCGTAT-CAAAGATT---TTAC----CATAATAAAT-CAATGTGTTGATGTTTTTACTGTA-GTA---AA--AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTACCATAGT-TA------AT--C---TGT----------------GTATCAA-AG-CTTTACCATTATA-------GTTAATCTAAT-T-GCCAGAGTCCCCCCCCCCCTT--TTTCTACCAGCTTTTATCATTATATAAAGTGTTT-----TATTTA-CTT-TAGTA--AA-TAATTCATCA-AATATTCCTTTATGTACCTTAAAAATGCG--GAAA-GTAAC-CCGCGTGTGAT----AA----AAATGA--TATTTT-ATAAAGTC-AGCCT------TCATTTCAAAATAAGAAAA---TAAAATCGAAACTA-----ATGCCGTTCGTATGCAATATTTTCAAGCATG-AAAGAGTGCAGTATACGACAA
gi|10 : tggAAATCACT--ATTAAGG-TTTACATGTA--TAAC-T-TGATAGGAAATAATGTATCA-ATTATTGCTTGATGTACCTTTAAAATGCG--AA-------C-CCACATGTGAT----AA----AAAAAAATCATCTT-------TC-GGACTTATA--CCATATCTAAAGACGACCA---T----TTAACACTATCTATACACTGTTCGTATGCAATATTT--AAGGATGAAAAat
gi|11 : GTGATGTCACAT---ATA--TAATATTGAC----GACCA--------GTCC--AAAA-CC--C-AT-T--T--CACGTA-TCGGACCAG-TGTGCAAAAGTCCACATTTCACA--TATGGA
gi|11 : ----GACCA--------GTG-G-AAAA-TCA-C-AT-T--T--CACGTG-TCAGACCAG-TGTGCAAAAAT--ACAccagtggaaaatcacatttcacgtgtcagaccagtgtgcaaaaatacacagttcacgtatcagaccagtgtgcaaaa
gi|11 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacatatg-CGTA-TCAGACCAG-TGTGCAAAAcagttcacgtatcagaccagtgtgcaaaa
gi|12 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacatatggaccagtggaaaatcacatttcacgtgtcagaccagtgtgcaaaaatacacagttcaGATTCTACACTGTGCGAT-TCAAATGACGTCACA----ATTGCAGATATCAGC----AACTG--------ATACG-AA-------T-AT-T--A--T----------ACTGG-TGTGCAAAAAT--GTATCTCA-A--ACCAGAAA-TTATGT---ATTC-GCTCATA
gi|13 : tatattacaatactgcattTATCA-AATATTGCTTGATATACCTTTAAAGTGCG--AAAAGGTAACTCCGCATATAAC----AAAAAGAAATAA--CAAATTAA-AAGATC-AGCCTC
gi|14 : taccatataaATAGTACTTGTACCAATTCTACACTGTGCAATTATGGATGTCATCACATGCAATTGCCAATATCAAC----GACCA--------GTCCG-AAAA-CC--C-Atgaactccattttaa
gi|15 : atcatatactttG-AAAA-TCCTT-GT-T--A--A-CCTA---AGACTGTTCGTGCAAAA-T--GCATACCA-A--TCCGAAAA-TTACGT---ATTC-GGT-GT-A-AC-------ATTCAACGTACGCAAAAGTTCTCTTAT----CATGGatgtgcaaaaat
gi|16 : --T-AT-T--G--C--ATA-TCAGACAGG-CATGCAAAAAT--CCATATCA-A--TCTGGAAA-TTAGGT---ATTC-GCTCAT-A-AC-------AATCAACATAT-TAAAG-TT---TTACTAATCATGGcatt
gi|17 : aatcca-AAAA-CCA-T-AT-T-----C-CATA-TCAGACCGA-CATGCAAAAAT--GCAATTCA-A--TTTGGAAA-TTATGT---ATTT-GCTTGTAA-G--------AATCAACATAT-C
gi|18 : CGATTCTGCACCGCACAAT-ATGGATTACATAACA----ATAGCCAATATCACC----GATCG--------GTC
gi|19 : atatgcttggtaatgattttgtTATACCAATTCTGCACCTAGCGAT-ACGAGTGACTTCACA----ATAGACGAGACCAGC----GACCT--------GTCTGAAAAA-CC--T-taga
gi|2 : TGTGCTGATTCCGCACCTCACAAT-ATGAGTGATGTCACA----ATAGCTCACATCAAC----GACTG--------GTCCA-AAAG-C--------------C-CATA-TCAGAATGG-CGTGCAAAAGT--GCATTTCA--------GAAA-TTACATATAATTC-ACTCGT----------------AACAT-T-CAAAGTTT---TAAC----CATGGTAAAT-CCA-------A-GTTTTTACCGTA-TTA---AAT-CAATGTA----TGAAAA--TTTTTAACAATTATAATGGTTAATTATAAT-CA------AT--G---TATCACAGTTATTACCACAGTATCGA-AG-ATTTACCATTACA-------GTACATC-AAT-----CA-TGT--------ACCTTGGTTTTTACC-----ACACCACTGTATCAAGC-TTT-----T---TA-C-CACAGTA--AAGTAATGT-TTATAATATTCCTTGATATACC-ATAAAATGCGAAAAAA-GTAAC-CTACATATGATTAAAAA----GAACAA--CATTTC-ATAAAATCAGATCCCAGACTCCATATCAAAtat
gi|21 : tatacatgataatatgacTATGCCGATTCTGCACTGCGCGAT-TCGGATGACGTCATG----ATACCCGATATtttt
gi|3 : GCTGATATCAATTTATGACCG--------TTCCG-AAAAACC--TCAT-C--A--C--ATA-TCGGACCAG-TGTGCAGAAAT--GTGTATCA-A--TCCGGAAA-TTACGT---GTTC-ACTTGT-A-AC-------AGTCAACCTTA-CAAAGATT---TTAC----CATGGTAAAT-TAG---G-----GTTTTTTCTGTA-GTATTTAAT-AAATGTACATTTG-AGAATTTTT-----ACCAAA---GTTTAATA-AATATA------AT--T---AAT----------------GTATCAA-AA-CTT
gi|4 : ATGTA----TG-AGAATTTTT-----ACCATA---GTTGATAATAAT-TATTGTATATTTC---TAT----------------GTATCGA-AG-ATTTACCATTACAGTAATCTGTAAATC-AATGTACCTA-TAT--------A----GG--TTTACCAAAGAAAATCATTGTATgccgctgtatcgcagat
gi|5 : ctaagtatacaacgttttaaacAT-ACAGGTGACATCACA----ATAGCCGATATCAAC----GACCGGTGTCCCAGTCCT-AAAA-CC--C-ATAT--C--G-CATT-TCAGACTTA-CGTGCAAAAAT--GCATA--A-A--ATAGGAAACTTATGC---ATTT-GCTCAT-A-AC-------AATCAACGTCT-CAATATTT---TAAC----CAT-ATGAAT--------TTAA-GTTTTTACCGTA-GTA---AAT-CAACGTG----TG-AGA--------------ATT---G-TTATCATTGT-TA---------------AT----------------GTGTC---AGTTTTTACCAgaaagattgcttgacgtgcattttaaaaaaaagaacttaaaacattttataaaatcgtacgtatcaaattttaaaaaccat
gi|6 : actgtA-AG-ATTTACCATTGTA-------GTAAATC-AATGTAGCTA--GT---------------CTTTTATCAGATAAAATCATTGTATTGAGG-TTT-----T---TA-C-TATAGTA--AAGTAATGTATGA-AATGTTTCTTGATGTACTTCTAAAATGC----AAA-G--------------------------AAATAT--CAGCTC-C-AGGA-----CTCCGTA--TCAAATTTTAAAAC--CCAACGT----TTAAC----TCCAT--ACCGTTCGTGTACAA---TTTGAAGCCTGAAAAAAGTGCAATATATGATAAa
gi|7 : aGTCGATATCACCTTCTGACCG--------GTCCG-CCAA-CCC-T-AT-T--C--C-CATAATCAGAC-GG-CTCGCAAAAAT--GCATATCA-AAGTATGGAAA-TGATGT----TTCAGCTCATGG-GCTCATAGGAGACAATATAT-CAAAGTTT---T--------------AAT-CAA-----------TTTTACTGTACGT----AGT-AAAT-----------CA--TTAT-----ACAATA---GTTTATAATAAT-TA------ATA-CACATGT----------------ATATTAATAG-CTTTACC
gi|8 : ----ATAGCCGGTATCACC----GAACG--------GTCCG-AAAC-CCA-T-AT-T-----C-CATA-ACTGACCGC-CGTACAAAAAT--GCATATCA-A--TTCAGAAA-TGACGT---ATTC-GCCAATAA-G--------AATCAACATAT-CAACGTTT---AAAC----CATGGTTAATAAAA---GTTT--TTTTTTACTGTA-tt
gi|9 : AGCTGATGTCAAC----GACCT--------GTCAA-AAAA-CCC-T-AT-C--G--C-T-TA-TCAGAC------TGAAAAACT--GCATATCA-A--TCCGGAAA-TTACGT---GTTT-GCTCGTAA--C-------AATCAACATGT-TAA-GTTT---GAAC----CATGGT-------------------TTTTACTGTA-GTC---AGTCAAATG-A----TA-ATT--TTTA-----ATTACA---AATTGTG--AAT-TA------acaccgaaccaaagcttgataatcaaaaaccatcacaataatacttacaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATGATTATGTCGATTTTGTACTGTGCAATGCAGATGACATCATAGTAACCAAT
Alignments
lowQualScore : 1111 1111 11111111 22222222222222 333333333333 555555555555555 1111111 111111 11111111111 111 666666666666666666666666666666666 3333333 1 999999999999999999999999999 11111 11 444444444 1 11 1 11 1111111 2222222222 11 22222222222222222222 44444444 111111111111 1
lowQualScore : 1 1 5 2222 0 3333 11111111 2 2 99999999999999 2 3 2 55 3 6666 3 1 333333333333 2 2 4 4 2 66 99999 0 6 999999999999999 1 5 2222222 333333 5 88888888888 2 000 1 1 1 5 999999999999999999999999999999999 666 66 2222222 0 444444444444444444444444444 33333 1 3 22 99 555555555 0 33 5 0 8 1 0 11 0 2222222 1 1 5555555555 11 22 22222222222222222222 1 1 6 22222222 777777777777 7 7 3 7
lowQualScore : . . . .... . .... ........ . . .............. . . . .. . .... . . ............ . . . . . .. ..... . . ............... . . ....... ...... . ........... . ... . . . . ................................. ... .. ....... . ........................... ..... . . .. .. ......... . .. . . . . . .. . ....... . . .......... .. .. .................... . . . ........ ............ . . . .
lowQualScore : 0 7 0 5555 8 1111 22222222 9 9 00000000000000 9 5 9 00 6 7777 6 2 222222222222 1 4 0 0 0 11 77777 1 4 000000000000000 4 7 7777777 777777 7 77777777777 4 000 7 0 4 7 666666666666666666666666666666666 555 77 5555555 0 222222222222222222222222222 00000 0 2 00 00 222222222 0 88 0 8 0 0 8 00 8 8888888 4 4 6666666666 00 44 44444444444444444444 0 0 7 77777777 777777777777 3 3 3 3
consensus : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCG--------GTCCG-AAAA-CC--TAT-TC----C-CATA-TCAGACCGG-CGTGCAAAAATGCATATCAA--TCCGGAAA-TTACGT---ATTC-GCTCGTAA-AC-------AATCAACGTAT-C-AAAGT--TT---TAACCATGGTAAAT-CAA---GTT----GTTTTTACCGTA-GTA---AAT-AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTATNATAAT-TA------AT--C---TAT----------------GTATCGA-AG-NTTTACCATTACA-------GTAAATC-AATGTAGCCAT-GT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATN-AAG-GTTT-----TA--TA-CT--ATAGTAAAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCG--AAAA-GTAAC-CCGCATGTGAT----AA----AAATAA--CATCTTATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
Reference ( family-1159 ) : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCG--------GTCCG-AAAA-CC--TAT-TN----C-CATA-TCAGACCGG-CGTGCAAAAATGCATATCAA--TCCGGAAA-TTACGT---ATTC-GCTCGTAA-AC-------AATCAACGTAT-C-AAAGT--TT---TNACCATGGTAAAT-CAA---GTT-A--GTTTTTACCGTA-GTA---AAT-AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTATNATAAT-TA------AT--C---TAT----------------GTATCGA-AG-NTTTACCATTACA-------GTAAATC-AATGTAGCCAT-GT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATT-AAG-NTTT-----TA--TA-CT--ATAGTAAAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCG--AAAA-GTAAC-CCGCATGTGAT----AA----AAATAA--CATCTTATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
gi|1 : ATGATATATATACC--TGCTTCACTGCACGAT-ATGGATGACGTCTCA----TTAGCCAATATGAGC----GACCG--------GTCCG-AAAA-CCA-TAT-TTAATTC-CATA-TCAGACCGG-CGTGCTAAAACCCATTTCAA--TCCGGAAG-TTACGT---CGTC-GTTTGTGACAC-------AATCACCGTAT-C-AAAGA--TT---TTACCATAATAAAT-CAATGTGTT-GATGTTTTTACTGTA-GTA---AA--AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTACCATAGT-TA------AT--C---TGT----------------GTATCAA-AG-CTTTACCATTATA-------GTTAATCTAAT-T-GCCAGAGTCCCCCCCCCCCTT--TTTCTACCAGCTTTTATCATTATATA-AAGTGTTT-----TATTTA-CT--TTAGTAAA-TAATTCATCA-AATATTCCTTTATGTACCTTAAAAATGCG--GAAA-GTAAC-CCGCGTGTGAT----AA----AAATGA--TATTTTATAAAGTC-AGCCT------TCATTTCAAAATAAGAAAA---TAAAATCGAAACTA-----ATGCCGTTCGTATGCAATATTTTCAAGCATG-AAAGAGTGCAGTATACGACAA
gi|10 : tggAAATCACT--ATT-AAG-GTTTACATGTA--TAACTTGATAGGAAA-TAATGTATCA-ATTATTGCTTGATGTACCTTTAAAATGCG--AA-------C-CCACATGTGAT----AA----AAAAAAATCATCTT------TC-GGACTTATA--CCATATCTAAAGACGACCA---T----TTAACACTATCTATACACTGTTCGTATGCAATA-TTT-AAGGATGAAAAat
gi|11 : GTGATGTCACAT---ATA--TAATATTGAC----GACCA--------GTCC--AAAA-CC--CAT-TT----CACGTA-TCGGACCAG-TGTGCAAAAGTCCACAT
gi|11 : ----GACCA--------GTG-G-AAAA-TCA-CAT-TT----CACGTG-TCAGACCAG-TGTGCAAAAATACACAttcacatatggaccagtggaaaatcacatttcacgtgtcagaccagtgtgcaaaaatacacagttcacgtatcagaccagtgtgcaaaa
gi|11 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacatatgT-TC----A-CGTA-TCAGACCAG-TGTGCAAAAgttcacgtatcagaccagtgtgcaaaa
gi|12 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacatatggaccagtggaaaatcacatttcacgtgtcagaccagtgtgcaaaaatacacagGATTCTACACTGTGCGAT-TCAAATGACGTCACA----ATTGCAGATATCAGC----AACTG--------ATACG-A---------------------ATA-TTATACTGG-TGTGCAAAAATGTATCTCAA--ACCAGAAA-TTATGT---ATTC-GCTCATA
gi|13 : tatattacaatactgcattTATCA-AATATTGCTTGATATACCTTTAAAGTGCG--AAAAGGTAACTCCGCATATAAC----AAAAAGAAATAA--CAAATTAAAAGATC-AGCCTC
gi|14 : taccatataaATAGTACTTGTACCAATTCTACACTGTGCAATTATGGATGTCATCACATGCAATTGCCAATATCAAC----GACCA--------GTCCG-AAAA-CC--CAtgaactccattttaa
gi|15 : atcatatactttG-AAAA-TCCTTGT-TA----A-CCTA---AGACTGTTCGTGCAAAA-TGCATACCAA--TCCGAAAA-TTACGT---ATTC-GGT-GT-A-AC-------ATTCAACGTACGCAAAAGTTCTC---TTATCATGGCAatgtgcaaaaat
gi|16 : --TAT-TG----C--ATA-TCAGACAGG-CATGCAAAAATCCATATCAA--TCTGGAAA-TTAGGT---ATTC-GCTCAT-A-AC-------AATCAACATAT-T-AAAGT--TTTACTAATCATGGtt
gi|17 : aatcca-AAAA-CCA-TAT-T-----C-CATA-TCAGACCGA-CATGCAAAAATGCAATTCAA--TTTGGAAA-TTATGT---ATTT-GCTTGTAA-G--------AATCAACATAT-C-
gi|18 : CGATTCTGCACCGCACAAT-ATGGATTACATAACA----ATAGCCAATATCACC----GATCG--------GTC
gi|19 : atatgcttggtaatgattttgtTATACCAATTCTGCACCTAGCGAT-ACGAGTGACTTCACA----ATAGACGAGACCAGC----GACCT--------GTCTGAAAAA-CC--Ttaga
gi|2 : TGTGCTGATTCCGCACCTCACAAT-ATGAGTGATGTCACA----ATAGCTCACATCAAC----GACTG--------GTCCA-AAAG-C-------------C-CATA-TCAGAATGG-CGTGCAAAAGTGCATTTCA-------GAAA-TTACATATAATTC-ACTCGT----------------AACAT-T-C-AAAGT--TT---TAACCATGGTAAAT-CCA-------A--GTTTTTACCGTA-TTA---AAT-CAATGTA----TGAAAA--TTTTTAACAATTATAATGGTTAATTATAAT-CA------AT--G---TATCACAGTTATTACCACAGTATCGA-AG-ATTTACCATTACA-------GTACATC-AAT-----CAT-GT--------ACCTTGGTTTTTACC-----ACACCACTGTATC-AAG-CTTT-----T---TA-CC--ACAGTAAAGTAATGT-TTATAATATTCCTTGATATACC-ATAAAATGCGAAAAAA-GTAAC-CTACATATGATTAAAAA----GAACAA--CATTTCATAAAATCAGATCCCAGACTCCATATCAAAtat
gi|21 : tatacatgataatatgacTATGCCGATTCTGCACTGCGCGAT-TCGGATGACGTCATG----ATACCCGATATtttt
gi|3 : GCTGATATCAATTTATGACCG--------TTCCG-AAAAACC--TCA-TC----A-CATA-TCGGACCAG-TGTGCAGAAATGTGTATCAA--TCCGGAAA-TTACGT---GTTC-ACTTGT-A-AC-------AGTCAACCTTA-C-AAAGA--TT---TTACCATGGTAAAT-TAG---G------GTTTTTTCTGTA-GTATTTAAT-AAATGTACATTTG-AGAATTTTT-----ACCAAA---GTTTAATA-AATATA------AT--T---AAT----------------GTATCAA-AA-CTT
gi|4 : ATGTA----TG-AGAATTTTT-----ACCATA---GTTGATAATAAT-TATTGTATATTTC---TAT----------------GTATCGA-AG-ATTTACCATTACAGTAATCTGTAAATC-AATGTACCTAT-AT--------A----GG--TTTACCAAAGAAAATCATTGTATGAAAG-ATTgccgctgtatcgcagat
gi|5 : ctaagtatacaacgttttaaacAT-ACAGGTGACATCACA----ATAGCCGATATCAAC----GACCGGTGTCCCAGTCCT-AAAA-CC--CATATC----G-CATT-TCAGACTTA-CGTGCAAAAATGCATA--AA--ATAGGAAACTTATGC---ATTT-GCTCAT-A-AC-------AATCAACGTCT-C-AATAT--TT---TAACCAT-----AT-GAA---TTTAA--GTTTTTACCGTA-GTA---AAT-CAACGTG----TG-AGA--------------ATT---G-TTATCATTGT-TA---------------AT----------------GTGTC---AGTTTTTACCAgcttgacgtgcattttaaaaaaaagaacttaaaacattttataaaatcgtacgtatcaaattttaaaaaccat
gi|6 : actgtA-AG-ATTTACCATTGTA-------GTAAATC-AATGTAGCTA--GT---------------CTTTTATCAGATAAAATCATTGTATT-GAG-GTTT-----T---TA-CT--ATAGTAAAGTAATGTATGA-AATGTTTCTTGATGTACTTCTAAAATGC----AAA-G--------------------------AAATAT--CAGCTC-CAGGA-----CTCCGTA--TCAAATTTTAAAAC--CCAACGT----TTAAC----TCCATA--CCGTTCGTGTACA--ATTTG-AAGCCTGAAAAAAGTGCAATATATGATAAa
gi|7 : aGTCGATATCACCTTCTGACCG--------GTCCG-CCAA-CCC-TAT-TC----C-CATAATCAGAC-GG-CTCGCAAAAATGCATATCAAAGTATGGAAA-TGATGT----TTCAGCTCATGG-GCTCATAGGAGACAATATAT-C-AAAGT--TT---T----------AAT-CAA------------TTTTACTGTACGTA---G-T-AAATC-----------A--TTAT-----ACAATA---GTTTATAATAAT-TA------ATA-CACATGT----------------ATATTAATAG-CTTTACC
gi|8 : ----ATAGCCGGTATCACC----GAACG--------GTCCG-AAAC-CCA-TAT-T-----C-CATA-ACTGACCGC-CGTACAAAAATGCATATCAA--TTCAGAAA-TGACGT---ATTC-GCCAATAA-G--------AATCAACATAT-C-AACGT--TT---AAACCATGGTTAATAAAA---GTT-T--TTTTTTACTGTA-tt
gi|9 : AGCTGATGTCAAC----GACCT--------GTCAA-AAAA-CCC-TAT-CG----C-T-TA-TCAGAC------TGAAAAACTGCATATCAA--TCCGGAAA-TTACGT---GTTT-GCTCGTAA--C-------AATCAACATGT-T-AA-GT--TT---GAACCATGGT--------------------TTTTACTGTA-GTC---AGTCAAATG-A----TA-ATT--TTTA-----ATTACA---AATTGTG--AAT-TA------acaccgaaccaaagcttgataatcaaaaaccatcacaataatacttacaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATGATTATGTCGATTTTGTACTGTGCAATGCAGATGACATCATAGTAACCAAT
Alignments
lowQualScore : 1111 1111 11111111 2222222222222 333333333333 666666666666 1111111 111111 11111111111 111 666666666666666666666666666666666 3333333 1 999999999999999999999999999 11111 444444444 1 11 1 11 1111111 2222222222 11 22222222222222222222 44444444 111111111111 1
lowQualScore : 1 1 5 2222 0 3333 11111111 3 3 4444444444444 3 3 2 55 3 6666 3 1 222222222222 2 2 4 4 9999999 555 1 77 222222222222 1 5 2222222 333333 5 88888888888 2 000 1 1 1 5 999999999999999999999999999999999 666 66 2222222 0 444444444444444444444444444 33333 1 3 1 8 000000000 0 33 5 0 8 1 0 11 0 2222222 1 1 5555555555 11 22 22222222222222222222 1 1 6 22222222 777777777777 7 7 3 7
lowQualScore : . . . .... . .... ........ . . ............. . . . .. . .... . . ............ . . . . ....... ... . .. ............ . . ....... ...... . ........... . ... . . . . ................................. ... .. ....... . ........................... ..... . . . . ......... . .. . . . . . .. . ....... . . .......... .. .. .................... . . . ........ ............ . . . .
lowQualScore : 0 7 0 5555 8 1111 22222222 1 1 1111111111111 1 5 9 00 6 7777 6 2 888888888888 1 4 0 0 9999999 000 6 44 111111111111 4 7 7777777 777777 7 77777777777 4 000 7 0 4 7 666666666666666666666666666666666 555 77 5555555 0 222222222222222222222222222 00000 0 2 0 0 222222222 0 88 0 8 0 0 8 00 8 8888888 4 4 6666666666 00 44 44444444444444444444 0 0 7 77777777 777777777777 3 3 3 3
consensus : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCG--------GTCCG-AAAA-CC-TAT-TC----C-CATA-TCAGACCGG-CGTGCAAAAATGCATATCAA--TCCGGAAA-TTACGT---ATTC-GCTCGT-A-AC-------AATCAACGTAT-C-AAAGTTT---TA--ACCATGGTAAAT-CAA--------G---TTTTTACCGTA-GTA---AAT-AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTATNATAAT-TA------AT--C---TAT----------------GTATCGA-AG-NTTTACCATTACA-------GTAAATC-AATGTAGCCAT-GT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATNAAG-GTTT-----TA--TA-CT--ATAGTAAAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCG--AAAA-GTAAC-CCGCATGTGAT----AA----AAATAA--CATCTTATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
Reference ( family-1159 ) : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCG--------GTCCG-AAAA-CC-TAT-TC----C-CATA-TCAGACCGG-CGTGCAAAAATGCATATCAA--TCCGGAAA-TTACGT---ATTC-GCTCGTAA-AC-------AATCAACGTAT-C-AAAGTTT---TA--ACCATGGTAAAT-CAA---G--TTG---TTTTTACCGTA-GTA---AAT-AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTATNATAAT-TA------AT--C---TAT----------------GTATCGA-AG-NTTTACCATTACA-------GTAAATC-AATGTAGCCAT-GT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATNAAG-GTTT-----TA--TA-CT--ATAGTAAAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCG--AAAA-GTAAC-CCGCATGTGAT----AA----AAATAA--CATCTTATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
gi|1 : ATGATATATATACC--TGCTTCACTGCACGAT-ATGGATGACGTCTCA----TTAGCCAATATGAGC----GACCG--------GTCCG-AAAA-CCATAT-TTAATTC-CATA-TCAGACCGG-CGTGCTAAAACCCATTTCAA--TCCGGAAG-TTACGT---CGTC-GTTTGTGACAC-------AATCACCGTAT-C-AAAGATT---TT--ACCATAATAAAT-CAATGTG--TTGATGTTTTTACTGTA-GTA---AA--AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTACCATAGT-TA------AT--C---TGT----------------GTATCAA-AG-CTTTACCATTATA-------GTTAATCTAAT-T-GCCAGAGTCCCCCCCCCCCTT--TTTCTACCAGCTTTTATCATTATATAAAGTGTTT-----TATTTA-CT--TTAGTAAA-TAATTCATCA-AATATTCCTTTATGTACCTTAAAAATGCG--GAAA-GTAAC-CCGCGTGTGAT----AA----AAATGA--TATTTTATAAAGTC-AGCCT------TCATTTCAAAATAAGAAAA---TAAAATCGAAACTA-----ATGCCGTTCGTATGCAATATTTTCAAGCATG-AAAGAGTGCAGTATACGACAA
gi|10 : tggAAATCACT--ATTAAG-GTTTACATGTA--TAACTTGATAGGAAA-TAATGTATCA-ATTATTGCTTGATGTACCTTTAAAATGCG--AA-------C-CCACATGTGAT----AA----AAAAAAATCATCTT------TC-GGACTTATA--CCATATCTAAAGACGACCA---T----TTAACACTATCTATACACTGTTCGTATGCAATA-TTT-AAGGATGAAAAat
gi|11 : GTGATGTCACAT---ATA--TAATATTGAC----GACCA--------GTCC--AAAA-CC-CAT-TT----CACGTA-TCGGACCAG-TGTGCAAAAGTCCACAT
gi|11 : ----GACCA--------GTG-G-AAAA-TCACAT-TT----CACGTG-TCAGACCAG-TGTGCAAAAATACACAttcacatatggaccagtggaaaatcacatttcacgtgtcagaccagtgtgcaaaaatacacagttcacgtatcagaccagtgtgcaaaa
gi|11 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacatatgT-TC----A-CGTA-TCAGACCAG-TGTGCAAAAgttcacgtatcagaccagtgtgcaaaa
gi|12 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacatatggaccagtggaaaatcacatttcacgtgtcagaccagtgtgcaaaaatacacagGATTCTACACTGTGCGAT-TCAAATGACGTCACA----ATTGCAGATATCAGC----AACTG--------ATACG-A--------------------ATA-TTATACTGG-TGTGCAAAAATGTATCTCAA--ACCAGAAA-TTATGT---ATTC-GCTCATA
gi|13 : tatattacaatactgcattTATCA-AATATTGCTTGATATACCTTTAAAGTGCG--AAAAGGTAACTCCGCATATAAC----AAAAAGAAATAA--CAAATTAAAAGATC-AGCCTC
gi|14 : taccatataaATAGTACTTGTACCAATTCTACACTGTGCAATTATGGATGTCATCACATGCAATTGCCAATATCAAC----GACCA--------GTCCG-AAAA-CC-CAtgaactccattttaa
gi|15 : atcatatactttAGACTGTTCGTGCAAAA-TGCATACCAA--TCCGAAAA-TTACGT---ATTC-GGT-GT-A-AC-------ATTCAACGTACGCAAAAGTTC---TCTTATCATGGCAatgtgcaaaaat
gi|16 : gaaaatccttgttaaccta-CATA-TCAGACAGG-CATGCAAAAATCCATATCAA--TCTGGAAA-TTAGGT---ATTC-GCTCAT-A-AC-------AATCAACATAT-T-AAAGTTTTACTA--ATCATGGtt
gi|17 : aatccatattg-AAAA-CCATAT-TC----C--ATA-TCAGACCGA-CATGCAAAAATGCAATTCAA--TTTGGAAA-TTATGT---ATTT-GCTTGTAA-G--------AATCAACATAT-C-
gi|18 : CGATTCTGCACCGCACAAT-ATGGATTACATAACA----ATAGCCAATATCACC----GATCG--------GTC
gi|19 : atatgcttggtaatgattttgtTATACCAATTCTGCACCTAGCGAT-ACGAGTGACTTCACA----ATAGACGAGACCAGC----GACCT--------GTCTGAAAAA-CC-Ttaga
gi|2 : TGTGCTGATTCCGCACCTCACAAT-ATGAGTGATGTCACA----ATAGCTCACATCAAC----GACTG--------GTCCA-AAAG---------C----C-CATA-TCAGAATGG-CGTGCAAAAGTGCATTTCA-------GAAA-TTACATATAATTC-ACTCGT----------------AACAT-T-C-AAAGTTT---TA--ACCATGGTAAATCCAA--------G---TTTTTACCGTA-TTA---AAT-CAATGTA----TGAAAA--TTTTTAACAATTATAATGGTTAATTATAAT-CA------AT--G---TATCACAGTTATTACCACAGTATCGA-AG-ATTTACCATTACA-------GTACATC-AAT-----CAT-GT--------ACCTTGGTTTTTACC-----ACACCACTGTATCAAG-CTTT-----T---TA-CC--ACAGTAAAGTAATGT-TTATAATATTCCTTGATATACC-ATAAAATGCGAAAAAA-GTAAC-CTACATATGATTAAAAA----GAACAA--CATTTCATAAAATCAGATCCCAGACTCCATATCAAAtat
gi|21 : tatacatgataatatgacTATGCCGATTCTGCACTGCGCGAT-TCGGATGACGTCATG----ATACCCGATATtttt
gi|3 : GCTGATATCAATTTATGACCG--------TTCCG-AAAAACC-TCA-TC----A-CATA-TCGGACCAG-TGTGCAGAAATGTGTATCAA--TCCGGAAA-TTACGT---GTTC-ACTTGT-A-AC-------AGTCAACCTTA-C-AAAGATT---TT--ACCATGGTAAAT-TAG---G----G---TTTTTTCTGTA-GTATTTAAT-AAATGTACATTTG-AGAATTTTT-----ACCAAA---GTTTAATA-AATATA------AT--T---AAT----------------GTATCAA-AA-CTT
gi|4 : ATGTA----TG-AGAATTTTT-----ACCATA---GTTGATAATAAT-TATTGTATATTTC---TAT----------------GTATCGA-AG-ATTTACCATTACAGTAATCTGTAAATC-AATGTACCTAT-AT--------A----GG--TTTACCAAAGAAAATCATTGTATGAAA-GATT-----gccgctgtatcgcagat
gi|5 : ctaagtatacaacgttttaaacAT-ACAGGTGACATCACA----ATAGCCGATATCAAC----GACCGGTGTCCCAGTCCT-AAAA-CC-CATATC----G-CATT-TCAGACTTA-CGTGCAAAAATGCATA--AA--ATAGGAAACTTATGC---ATTT-GCTCAT-A-AC-------AATCAACGTCT-C-AATATTT---TA--ACCATATGAATT-TAA--------G---TTTTTACCGTA-GTA---AAT-CAACGTG----TG-AGA--------------ATT---G-TTATCATTGT-TA---------------AT----------------GTGTC---AGTTTTTACCAgcttgacgtgcattttaaaaaaaagaacttaaaacattttataaaatcgtacgtatcaaattttaaaaaccat
gi|6 : actgtA-AG-ATTTACCATTGTA-------GTAAATC-AATGTAGCTA--GT---------------CTTTTATCAGATAAAATCATTGTATTGAG-GTTT-----T---TA-CT--ATAGTAAAGTAATGTATGA-AATGTTTCTTGATGTACTTCTAAAATGC----AAA-G--------------------------AAATAT--CAGCTC-CAGGA-----CTCCGTA--TCAAATTTTAAAAC--CCAACGT----TTAAC----TCCATA--CCGTTCGTGTACA--ATTTG-AAGCCTGAAAAAAGTGCAATATATGATAAa
gi|7 : aGTCGATATCACCTTCTGACCG--------GTCCG-CCAA-CCCTAT-TC----C-CATAATCAGAC-GG-CTCGCAAAAATGCATATCAAAGTATGGAAA-TGATGT----TTCAGCTCATGG-GCTCATAGGAGACAATATAT-C-AAAGTTT---TA--A----------T-CAA-------------TTTTACTGTACGTA---G-T-AAATC-----------A--TTAT-----ACAATA---GTTTATAATAAT-TA------ATA-CACATGT----------------ATATTAATAG-CTTTACC
gi|8 : ----ATAGCCGGTATCACC----GAACG--------GTCCG-AAAC-CCATAT-TC----C--ATA-ACTGACCGC-CGTACAAAAATGCATATCAA--TTCAGAAA-TGACGT---ATTC-GCCAATAA-G--------AATCAACATAT-C-AACGTTT---AA--ACCATGGTTAAT-AAA---AGTTTT---TTTTTACTGTA-tt
gi|9 : AGCTGATGTCAAC----GACCT--------GTCAA-AAAA-CCCTAT--C----G-CTTA-TCAGAC------TGAAAAACTGCATATCAA--TCCGGAAA-TTACGT---GTTT-GCTCGT-A-AC-------AATCAACATGT-T--AAGTTT---GA--ACCATG------------------G---TTTTTACTGTA-GTC---AGTCAAATG-A----TA-ATT--TTTA-----ATTACA---AATTGTG--AAT-TA------acaccgaaccaaagcttgataatcaaaaaccatcacaataatacttacaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATGATTATGTCGATTTTGTACTGTGCAATGCAGATGACATCATAGTAACCAAT
Alignments
lowQualScore : 1111 1111 11111111 2222222222222 111111111 1111111 44444444444444444444444444 1111 1111 11111111111 111 666666666666666666666666666666666 3333333 1 999999999999999999999999999 11111 444444444 1 11 1 11 1111111 2222222222 11 22222222222222222222 44444444 111111111111 1
lowQualScore : 1 1 5 2222 0 3333 11111111 3 3 4444444444444 3 2 55 3 6666 444444444 1 55 1 7 3 2222222 11111111111111111111111111 5 5555 5 1 2222 5 88888888888 2 000 1 1 1 5 999999999999999999999999999999999 666 66 2222222 0 444444444444444444444444444 33333 1 3 1 8 000000000 0 33 5 0 8 1 0 11 0 2222222 1 1 5555555555 11 22 22222222222222222222 1 1 6 22222222 777777777777 7 7 3 7
lowQualScore : . . . .... . .... ........ . . ............. . . .. . .... ......... . .. . . . ....... .......................... . .... . . .... . ........... . ... . . . . ................................. ... .. ....... . ........................... ..... . . . . ......... . .. . . . . . .. . ....... . . .......... .. .. .................... . . . ........ ............ . . . .
lowQualScore : 0 7 0 5555 8 1111 22222222 1 1 1111111111111 1 9 00 6 7777 555555555 2 55 8 3 6 0000000 99999999999999999999999999 0 1111 7 4 1111 7 77777777777 4 000 7 0 4 7 666666666666666666666666666666666 555 77 5555555 0 222222222222222222222222222 00000 0 2 0 0 222222222 0 88 0 8 0 0 8 00 8 8888888 4 4 6666666666 00 44 44444444444444444444 0 0 7 77777777 777777777777 3 3 3 3
consensus : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCGGT--------CCG-AAAA-CC-TAT-TC----C-CAT-ATCAGACCGG-CGTGCAAAAATGCATATCAA--TCCGGAAA-TTACGT---ATTC---------GCTCGTAACA--ATCAACGTAT-C-AAAGTTT---TA--ACCATGGTAAAT-CA-A---------G-----TTTTTACCGTA-GTA---AAT-AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTATNATAAT-TA------AT--C---TAT----------------GTATCGA-AG-NTTTACCATTACA-------GTAAATC-AATGTAGCCAT-GT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATNAAG-GTTT-----TA--TA-CT--ATAGTAAAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCG--AAAA-GTAAC-CCGCATGTGAT----AA----AAATAA--CATCTTATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
Reference ( family-1159 ) : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCGGT--------CCG-AAAA-CC-TAT-TC----C-CAT-ATCAGACCGG-CGTGCAAAAATGCATATCAA--TCCGGAAA-TTACGT---ATTC---------GCTCGTAACA--ATCAACGTAT-C-AAAGTTT---TA--ACCATGGTAAAT-CA-A---------G-----TTTTTACCGTA-GTA---AAT-AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTATNATAAT-TA------AT--C---TAT----------------GTATCGA-AG-NTTTACCATTACA-------GTAAATC-AATGTAGCCAT-GT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATNAAG-GTTT-----TA--TA-CT--ATAGTAAAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCG--AAAA-GTAAC-CCGCATGTGAT----AA----AAATAA--CATCTTATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
gi|1 : ATGATATATATACC--TGCTTCACTGCACGAT-ATGGATGACGTCTCA----TTAGCCAATATGAGC----GACCGGT--------CCG-AAAA-CCATAT-TTAATTC-CAT-ATCAGACCGG-CGTGCTAAAACCCATTTCAA--TCCGGAAG-TTACGT---CGTC---------GTTTGTGACACAATCACCGTAT-C-AAAGATT---TT--ACCATAATAAAT-CA-ATGTGTTGATG-----TTTTTACTGTA-GTA---AA--AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTACCATAGT-TA------AT--C---TGT----------------GTATCAA-AG-CTTTACCATTATA-------GTTAATCTAAT-T-GCCAGAGTCCCCCCCCCCCTT--TTTCTACCAGCTTTTATCATTATATAAAGTGTTT-----TATTTA-CT--TTAGTAAA-TAATTCATCA-AATATTCCTTTATGTACCTTAAAAATGCG--GAAA-GTAAC-CCGCGTGTGAT----AA----AAATGA--TATTTTATAAAGTC-AGCCT------TCATTTCAAAATAAGAAAA---TAAAATCGAAACTA-----ATGCCGTTCGTATGCAATATTTTCAAGCATG-AAAGAGTGCAGTATACGACAA
gi|10 : tggAAATCACT--ATTAAG-GTTTACATGTA--TAACTTGATAGGAAA-TAATGTATCA-ATTATTGCTTGATGTACCTTTAAAATGCG--AA-------C-CCACATGTGAT----AA----AAAAAAATCATCTT------TC-GGACTTATA--CCATATCTAAAGACGACCA---T----TTAACACTATCTATACACTGTTCGTATGCAATA-TTT-AAGGATGAAAAat
gi|11 : GTGATGTCACAT---ATA--TAATATTGAC----GACCAGT--------CC--AAAA-CC-CAT-TT----CACGT-ATCGGACCAG-TGTGCAAAAGTCCACAT
gi|11 : ----GACCAGT--------G-G-AAAA-TCACAT-TT----CACGT-GTCAGACCAG-TGTGCAAAAATACACAttcacatatggaccagtggaaaatcacatttcacgtgtcagaccagtgtgcaaaaatacacagttcacgtatcagaccagtgtgcaaaa
gi|11 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacatatgT-TC----A-CGT-ATCAGACCAG-TGTGCAAAAgttcacgtatcagaccagtgtgcaaaa
gi|12 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacatatggaccagtggaaaatcacatttcacgtgtcagaccagtgtgcaaaaatacacagGATTCTACACTGTGCGAT-TCAAATGACGTCACA----ATTGCAGATATCAGC----AACTGAT--------ACG-A--------------------AT-ATTATACTGG-TGTGCAAAAATGTATCTCAA--ACCAGAAA-TTATGT---ATTC---------GCTCATA
gi|13 : tatattacaatactgcattTATCA-AATATTGCTTGATATACCTTTAAAGTGCG--AAAAGGTAACTCCGCATATAAC----AAAAAGAAATAA--CAAATTAAAAGATC-AGCCTC
gi|14 : taccatataaATAGTACTTGTACCAATTCTACACTGTGCAATTATGGATGTCATCACATGCAATTGCCAATATCAAC----GACCAGT--------CCG-AAAA-CC-CAtgaactccattttaa
gi|15 : atcatatactttAGACTGTTCGTGCAAAA-TGCATACCAA--TCCGAAAA-TTACGT---ATTC---------GGT-GTAACA--TTCAACGTACGCAAAAGTTC---TCTTATCATGGCAatgtgcaaaaat
gi|16 : gaaaatccttgttaaccta-CAT-ATCAGACAGG-CATGCAAAAATCCATATCAA--TCTGGAAA-TTAGGT---ATTC---------GCTCATAACA--ATCAACATAT-T-AAAGTTTTACTA--ATCATGGtt
gi|17 : aatccatattg-AAAA-CCATAT-TC----C--AT-ATCAGACCGA-CATGCAAAAATGCAATTCAA--TTTGGAAA-TTATGT---ATTT---------GCTTGTAAGA--ATCAACATAT-C-
gi|18 : CGATTCTGCACCGCACAAT-ATGGATTACATAACA----ATAGCCAATATCACC----GATCGGT--------C
gi|19 : atatgcttggtaatgattttgtTATACCAATTCTGCACCTAGCGAT-ACGAGTGACTTCACA----ATAGACGAGACCAGC----GACCTGT--------CTGAAAAA-CC-Ttaga
gi|2 : TGTGCTGATTCCGCACCTCACAAT-ATGAGTGATGTCACA----ATAGCTCACATCAAC----GACTGGT--------CCA-AAAG---------C----C-CAT-ATCAGAATGG-CGTGCAAAAGTGCATTTCA-------GAAA-TTACATATAATTC---------ACTCGTAAC---AT-------T-C-AAAGTTT---TA--ACCATGGTAAATCCA-A---------G-----TTTTTACCGTA-TTA---AAT-CAATGTA----TGAAAA--TTTTTAACAATTATAATGGTTAATTATAAT-CA------AT--G---TATCACAGTTATTACCACAGTATCGA-AG-ATTTACCATTACA-------GTACATC-AAT-----CAT-GT--------ACCTTGGTTTTTACC-----ACACCACTGTATCAAG-CTTT-----T---TA-CC--ACAGTAAAGTAATGT-TTATAATATTCCTTGATATACC-ATAAAATGCGAAAAAA-GTAAC-CTACATATGATTAAAAA----GAACAA--CATTTCATAAAATCAGATCCCAGACTCCATATCAAAtat
gi|21 : tatacatgataatatgacTATGCCGATTCTGCACTGCGCGAT-TCGGATGACGTCATG----ATACCCGATATtttt
gi|3 : GCTGATATCAATTTATGACCGTT--------CCG-AAAAACC-TCA-TC----A-CAT-ATCGGACCAG-TGTGCAGAAATGTGTATCAA--TCCGGAAA-TTACGT---GTTC---------ACTTGTAACA--GTCAACCTTA-C-AAAGATT---TT--ACCATGGTAAAT-TAGG---------G-----TTTTTTCTGTA-GTATTTAAT-AAATGTACATTTG-AGAATTTTT-----ACCAAA---GTTTAATA-AATATA------AT--T---AAT----------------GTATCAA-AA-CTT
gi|4 : GTATAC-AACGTTT---TA--AACATG-TA--T-GAGA---------A-----TTTTTACCATA-GTT---GAT-AAgccgctgtatcgcagat
gi|4 : ctaaATGTA----TG-AGAATTTTT-----ACCATA---GTTGATAATAAT-TATTGTATATTTC---TAT----------------GTATCGA-AG-ATTTACCATTACAGTAATCTGTAAATC-AATGTACCTAT-AT--------A----GG--TTTACCAAAGAAAATCATTGTATGAAA-GATT-----taattattgtatatttctatgtatcgaagatttaccattacagtaatctgtaaatcaatgtacctatataggtttaccaaagaaaatcattgtatgaaagattgcttgacgtgcattttaaaaaaaagaacttaaaacattttataaaatcgtacgtatcaaattttaaaaaccat
gi|5 : ctaagtatacaacgttttaaacAT-ACAGGTGACATCACA----ATAGCCGATATCAAC----GACCGGTGTCCCAGTCCT-AAAA-CC-CATATC----G-CAT-TTCAGACTTA-CGTGCAAAAATGCATA--AA--ATAGGAAACTTATGC---ATTT---------GCTCATAACA--ATCAACGTCT-C-AATATTT---TA--ACCATATGAATT-TA-A---------G-----TTTTTACCGTA-GTA---AAT-CAACGTG----TG-AGA--------------ATT---G-TTATCATTGT-TA---------------AT----------------GTGTC---AGTTTTTACCAgcttgacgtgcattttaaaaaaaagaacttaaaacattttataaaatcgtacgtatcaaattttaaaaaccat
gi|6 : actgtA-AG-ATTTACCATTGTA-------GTAAATC-AATGTAGCTA--GT---------------CTTTTATCAGATAAAATCATTGTATTGAG-GTTT-----T---TA-CT--ATAGTAAAGTAATGTATGA-AATGTTTCTTGATGTACTTCTAAAATGC----AAA-G--------------------------AAATAT--CAGCTC-CAGGA-----CTCCGTA--TCAAATTTTAAAAC--CCAACGT----TTAAC----TCCATA--CCGTTCGTGTACA--ATTTG-AAGCCTGAAAAAAGTGCAATATATGATAAa
gi|7 : aGTCGATATCACCTTCTGACCGGT--------CCG-CCAA-CCCTAT-TC----C-CATAATCAGA-CGG-CTCGCAAAAATGCATATCAAAGTATGGAAA-TGATGT----TTCAGCTCATGGGCTCATAGGA--GACAATATAT-C-AAAGTTT---T------------AAT-CA-A----------------TTTTACTGTACGT----AGT-AAAT-----------CA--TTAT-----ACAATA---GTTTATAATAAT-TA------ATA-CACATGT----------------ATATTAATAG-CTTTACC
gi|8 : ----ATAGCCGGTATCACC----GAACGGT--------CCG-AAAC-CCATAT-TC----C--AT-AACTGACCGC-CGTACAAAAATGCATATCAA--TTCAGAAA-TGACGT---ATTC---------GCCAATAAGA--ATCAACATAT-C-AACGTTT---AA--ACCATGGTTAAT-AA-A---------AGTTTTTTTTTACTGTA-tt
gi|9 : AGCTGATGTCAAC----GACCTGT--------CAA-AAAA-CCCTAT--C----G-CTT-ATCAGAC------TGAAAAACTGCATATCAA--TCCGGAAA-TTACGT---GTTT---------GCTCGTAACA--ATCAACATGT-T--AAGTTT---GA--ACCATG--------------------G-----TTTTTACTGTA-GTC---AGTCAAATG-A----TA-ATT--TTTA-----ATTACA---AATTGTG--AAT-TA------acaccgaaccaaagcttgataatcaaaaaccatcacaataatacttacaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATGATTATGTCGATTTTGTACTGTGCAATGCAGATGACATCATAGTAACCAAT
Alignments
lowQualScore : 1111 1111 11111111 2222222222222 111111111 1111111 44444444444444444444444444 1111 1111 11111111111 111 666666666666666666666666666666666 3333333 1 999999999999999999999999999 11111 444444444 1 11 1 11 1111111 2222222222 11 22222222222222222222 44444444 111111111111 1
lowQualScore : 1 1 5 2222 0 3333 11111111 3 3 4444444444444 3 2 55 3 6666 444444444 1 55 1 7 3 2222222 11111111111111111111111111 5 5555 5 1 2222 5 88888888888 2 000 1 1 1 5 999999999999999999999999999999999 666 66 2222222 0 444444444444444444444444444 33333 1 3 1 8 000000000 0 33 5 0 8 1 0 11 0 2222222 1 1 5555555555 11 22 22222222222222222222 1 1 6 22222222 777777777777 7 7 3 7
lowQualScore : . . . .... . .... ........ . . ............. . . .. . .... ......... . .. . . . ....... .......................... . .... . . .... . ........... . ... . . . . ................................. ... .. ....... . ........................... ..... . . . . ......... . .. . . . . . .. . ....... . . .......... .. .. .................... . . . ........ ............ . . . .
lowQualScore : 0 7 0 5555 8 1111 22222222 1 1 1111111111111 1 9 00 6 7777 555555555 2 55 8 3 6 0000000 99999999999999999999999999 0 1111 7 4 1111 7 77777777777 4 000 7 0 4 7 666666666666666666666666666666666 555 77 5555555 0 222222222222222222222222222 00000 0 2 0 0 222222222 0 88 0 8 0 0 8 00 8 8888888 4 4 6666666666 00 44 44444444444444444444 0 0 7 77777777 777777777777 3 3 3 3
consensus : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCGGT--------CCG-AAAA-CC-TAT-TC----C-CAT-ATCAGACCGG-CGTGCAAAAATGCATATCAA--TCCGGAAA-TTACGT---ATTC---------GCTCGTAACA--ATCAACGTAT-C-AAAGTTT---TA--ACCATGGTAAAT-CA-A---------G-----TTTTTACCGTA-GTA---AAT-AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTATNATAAT-TA------AT--C---TAT----------------GTATCGA-AG-NTTTACCATTACA-------GTAAATC-AATGTAGCCAT-GT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATNAAG-GTTT-----TA--TA-CT--ATAGTAAAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCG--AAAA-GTAAC-CCGCATGTGAT----AA----AAATAA--CATCTTATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
Reference ( family-1159 ) : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCGGT--------CCG-AAAA-CC-TAT-TC----C-CAT-ATCAGACCGG-CGTGCAAAAATGCATATCAA--TCCGGAAA-TTACGT---ATTC---------GCTCGTAACA--ATCAACGTAT-C-AAAGTTT---TA--ACCATGGTAAAT-CA-A---------G-----TTTTTACCGTA-GTA---AAT-AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTATNATAAT-TA------AT--C---TAT----------------GTATCGA-AG-NTTTACCATTACA-------GTAAATC-AATGTAGCCAT-GT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATNAAG-GTTT-----TA--TA-CT--ATAGTAAAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCG--AAAA-GTAAC-CCGCATGTGAT----AA----AAATAA--CATCTTATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
gi|1 : ATGATATATATACC--TGCTTCACTGCACGAT-ATGGATGACGTCTCA----TTAGCCAATATGAGC----GACCGGT--------CCG-AAAA-CCATAT-TTAATTC-CAT-ATCAGACCGG-CGTGCTAAAACCCATTTCAA--TCCGGAAG-TTACGT---CGTC---------GTTTGTGACACAATCACCGTAT-C-AAAGATT---TT--ACCATAATAAAT-CA-ATGTGTTGATG-----TTTTTACTGTA-GTA---AA--AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTACCATAGT-TA------AT--C---TGT----------------GTATCAA-AG-CTTTACCATTATA-------GTTAATCTAAT-T-GCCAGAGTCCCCCCCCCCCTT--TTTCTACCAGCTTTTATCATTATATAAAGTGTTT-----TATTTA-CT--TTAGTAAA-TAATTCATCA-AATATTCCTTTATGTACCTTAAAAATGCG--GAAA-GTAAC-CCGCGTGTGAT----AA----AAATGA--TATTTTATAAAGTC-AGCCT------TCATTTCAAAATAAGAAAA---TAAAATCGAAACTA-----ATGCCGTTCGTATGCAATATTTTCAAGCATG-AAAGAGTGCAGTATACGACAA
gi|10 : tggAAATCACT--ATTAAG-GTTTACATGTA--TAACTTGATAGGAAA-TAATGTATCA-ATTATTGCTTGATGTACCTTTAAAATGCG--AA-------C-CCACATGTGAT----AA----AAAAAAATCATCTT------TC-GGACTTATA--CCATATCTAAAGACGACCA---T----TTAACACTATCTATACACTGTTCGTATGCAATA-TTT-AAGGATGAAAAat
gi|11 : GTGATGTCACAT---ATA--TAATATTGAC----GACCAGT--------CC--AAAA-CC-CAT-TT----CACGT-ATCGGACCAG-TGTGCAAAAGTCCACAT
gi|11 : ----GACCAGT--------G-G-AAAA-TCACAT-TT----CACGT-GTCAGACCAG-TGTGCAAAAATACACAttcacatatggaccagtggaaaatcacatttcacgtgtcagaccagtgtgcaaaaatacacagttcacgtatcagaccagtgtgcaaaa
gi|11 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacatatgT-TC----A-CGT-ATCAGACCAG-TGTGCAAAAgttcacgtatcagaccagtgtgcaaaa
gi|12 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacatatggaccagtggaaaatcacatttcacgtgtcagaccagtgtgcaaaaatacacagGATTCTACACTGTGCGAT-TCAAATGACGTCACA----ATTGCAGATATCAGC----AACTGAT--------ACG-A--------------------AT-ATTATACTGG-TGTGCAAAAATGTATCTCAA--ACCAGAAA-TTATGT---ATTC---------GCTCATA
gi|13 : tatattacaatactgcattTATCA-AATATTGCTTGATATACCTTTAAAGTGCG--AAAAGGTAACTCCGCATATAAC----AAAAAGAAATAA--CAAATTAAAAGATC-AGCCTC
gi|14 : taccatataaATAGTACTTGTACCAATTCTACACTGTGCAATTATGGATGTCATCACATGCAATTGCCAATATCAAC----GACCAGT--------CCG-AAAA-CC-CAtgaactccattttaa
gi|15 : atcatatactttAGACTGTTCGTGCAAAA-TGCATACCAA--TCCGAAAA-TTACGT---ATTC---------GGT-GTAACA--TTCAACGTACGCAAAAGTTC---TCTTATCATGGCAatgtgcaaaaat
gi|16 : gaaaatccttgttaaccta-CAT-ATCAGACAGG-CATGCAAAAATCCATATCAA--TCTGGAAA-TTAGGT---ATTC---------GCTCATAACA--ATCAACATAT-T-AAAGTTTTACTA--ATCATGGtt
gi|17 : aatccatattg-AAAA-CCATAT-TC----C--AT-ATCAGACCGA-CATGCAAAAATGCAATTCAA--TTTGGAAA-TTATGT---ATTT---------GCTTGTAAGA--ATCAACATAT-C-
gi|18 : CGATTCTGCACCGCACAAT-ATGGATTACATAACA----ATAGCCAATATCACC----GATCGGT--------C
gi|19 : atatgcttggtaatgattttgtTATACCAATTCTGCACCTAGCGAT-ACGAGTGACTTCACA----ATAGACGAGACCAGC----GACCTGT--------CTGAAAAA-CC-Ttaga
gi|2 : TGTGCTGATTCCGCACCTCACAAT-ATGAGTGATGTCACA----ATAGCTCACATCAAC----GACTGGT--------CCA-AAAG---------C----C-CAT-ATCAGAATGG-CGTGCAAAAGTGCATTTCA-------GAAA-TTACATATAATTC---------ACTCGTAAC---AT-------T-C-AAAGTTT---TA--ACCATGGTAAATCCA-A---------G-----TTTTTACCGTA-TTA---AAT-CAATGTA----TGAAAA--TTTTTAACAATTATAATGGTTAATTATAAT-CA------AT--G---TATCACAGTTATTACCACAGTATCGA-AG-ATTTACCATTACA-------GTACATC-AAT-----CAT-GT--------ACCTTGGTTTTTACC-----ACACCACTGTATCAAG-CTTT-----T---TA-CC--ACAGTAAAGTAATGT-TTATAATATTCCTTGATATACC-ATAAAATGCGAAAAAA-GTAAC-CTACATATGATTAAAAA----GAACAA--CATTTCATAAAATCAGATCCCAGACTCCATATCAAAtat
gi|21 : tatacatgataatatgacTATGCCGATTCTGCACTGCGCGAT-TCGGATGACGTCATG----ATACCCGATATtttt
gi|3 : GCTGATATCAATTTATGACCGTT--------CCG-AAAAACC-TCA-TC----A-CAT-ATCGGACCAG-TGTGCAGAAATGTGTATCAA--TCCGGAAA-TTACGT---GTTC---------ACTTGTAACA--GTCAACCTTA-C-AAAGATT---TT--ACCATGGTAAAT-TAGG---------G-----TTTTTTCTGTA-GTATTTAAT-AAATGTACATTTG-AGAATTTTT-----ACCAAA---GTTTAATA-AATATA------AT--T---AAT----------------GTATCAA-AA-CTT
gi|4 : GTATAC-AACGTTT---TA--AACATG-TA--T-GAGA---------A-----TTTTTACCATA-GTT---GAT-AAgccgctgtatcgcagat
gi|4 : ctaaATGTA----TG-AGAATTTTT-----ACCATA---GTTGATAATAAT-TATTGTATATTTC---TAT----------------GTATCGA-AG-ATTTACCATTACAGTAATCTGTAAATC-AATGTACCTAT-AT--------A----GG--TTTACCAAAGAAAATCATTGTATGAAA-GATT-----taattattgtatatttctatgtatcgaagatttaccattacagtaatctgtaaatcaatgtacctatataggtttaccaaagaaaatcattgtatgaaagattgcttgacgtgcattttaaaaaaaagaacttaaaacattttataaaatcgtacgtatcaaattttaaaaaccat
gi|5 : ctaagtatacaacgttttaaacAT-ACAGGTGACATCACA----ATAGCCGATATCAAC----GACCGGTGTCCCAGTCCT-AAAA-CC-CATATC----G-CAT-TTCAGACTTA-CGTGCAAAAATGCATA--AA--ATAGGAAACTTATGC---ATTT---------GCTCATAACA--ATCAACGTCT-C-AATATTT---TA--ACCATATGAATT-TA-A---------G-----TTTTTACCGTA-GTA---AAT-CAACGTG----TG-AGA--------------ATT---G-TTATCATTGT-TA---------------AT----------------GTGTC---AGTTTTTACCAgcttgacgtgcattttaaaaaaaagaacttaaaacattttataaaatcgtacgtatcaaattttaaaaaccat
gi|6 : actgtA-AG-ATTTACCATTGTA-------GTAAATC-AATGTAGCTA--GT---------------CTTTTATCAGATAAAATCATTGTATTGAG-GTTT-----T---TA-CT--ATAGTAAAGTAATGTATGA-AATGTTTCTTGATGTACTTCTAAAATGC----AAA-G--------------------------AAATAT--CAGCTC-CAGGA-----CTCCGTA--TCAAATTTTAAAAC--CCAACGT----TTAAC----TCCATA--CCGTTCGTGTACA--ATTTG-AAGCCTGAAAAAAGTGCAATATATGATAAa
gi|7 : aGTCGATATCACCTTCTGACCGGT--------CCG-CCAA-CCCTAT-TC----C-CATAATCAGA-CGG-CTCGCAAAAATGCATATCAAAGTATGGAAA-TGATGT----TTCAGCTCATGGGCTCATAGGA--GACAATATAT-C-AAAGTTT---T------------AAT-CA-A----------------TTTTACTGTACGT----AGT-AAAT-----------CA--TTAT-----ACAATA---GTTTATAATAAT-TA------ATA-CACATGT----------------ATATTAATAG-CTTTACC
gi|8 : ----ATAGCCGGTATCACC----GAACGGT--------CCG-AAAC-CCATAT-TC----C--AT-AACTGACCGC-CGTACAAAAATGCATATCAA--TTCAGAAA-TGACGT---ATTC---------GCCAATAAGA--ATCAACATAT-C-AACGTTT---AA--ACCATGGTTAAT-AA-A---------AGTTTTTTTTTACTGTA-tt
gi|9 : AGCTGATGTCAAC----GACCTGT--------CAA-AAAA-CCCTAT--C----G-CTT-ATCAGAC------TGAAAAACTGCATATCAA--TCCGGAAA-TTACGT---GTTT---------GCTCGTAACA--ATCAACATGT-T--AAGTTT---GA--ACCATG--------------------G-----TTTTTACTGTA-GTC---AGTCAAATG-A----TA-ATT--TTTA-----ATTACA---AATTGTG--AAT-TA------acaccgaaccaaagcttgataatcaaaaaccatcacaataatacttacaa
blockSeqs : T G T TGCA TTAT GTCCCAGT A A ACATTTCA A T AG C ATAA AGCTCATGG C . G G A TACTA GTTAATAAAAGTTTT C ATTT C T CATT A TTTTTAACA T ATG T T T A ATGTATCACAGTTATTACCACA AAT TT GTAATCT . CATGTACCTTGGT AAAGA A G T . ACATGTA A TG G T G AA GGTAACT A G AAAAAG AT TC ATAAAATCAGATCCCAGACT T G G ACGT ACTATCTATACA A T . A
blockSeqs : A . T TTCT . . . CATTTCA . . . . A . C . A A . TCTT GTAAATCCAAG . A . T . . ATTTTT C . T T T . TTGTATATTTCTAT GA A . . GTACCTATATAGG AGATA C G C . T . . G . G . GTAAC G A TAAAAA . AA CAGGACTCCGTA A A . T TCCATA . . . A
blockSeqs : G . . . . . . ATATTCC . . . . A . T . A . . TA GTAAATTAGGG . T . T . . ATTTTT C . T A T . ATACACATGT AA C . . GTAGCTAGTC . A G G . T . . . . C . C A A AA . TT TCGGACTTATA T
blockSeqs : A . . . . . . CATATCG . . . . A . C . C . . TT TGAATTTAAG . A . T . . TTAT A . T C T . ATTAAT GA A A . T . . T . G . . . . GC
blockSeqs : G . . . . . . CTATTCC . . . . A . T . G . . TA TATGAGAA . C . . . . TTTA T . A A . . AT . A
blockSeqs : G . . . . . . ATATTCC . . . . G . C . G . . TA AATCAA . . . . . . . . . . G . . C
blockSeqs : . . . . . . TCATCA . . . . A . C . A . . AA G .
blockSeqs : . . . . . CTATCG . . . . A . A . A . . GA
blockSeqs : . . . . . CC . . . . G . C . A . . T
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : .
blockSeqCons : ATATTCN****** ** TAATNAGAG***************** TTTTT****** ATGCACATTAAT********************* GC***** AG********
originalCons : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCGGT--------CCG-AAAA-CC-TAT-TC----C-CAT-ATCAGACCGG-CGTGCAAAAATGCATATCAA--TCCGGAAA-TTACGT---ATTC---------GCTCGTAACA--ATCAACGTAT-C-AAAGTTT---TA--ACCATGGTAAAT-CA-A---------G-----TTTTTACCGTA-GTA---AAT-AAATGTA----TG-AGA--TTTT-----ACTATA---GTTTATNATAAT-TA------AT--C---TAT----------------GTATCGA-AG-NTTTACCATTACA-------GTAAATC-AATGTAGCCAT-GT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATNAAG-GTTT-----TA--TA-CT--ATAGTAAAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCG--AAAA-GTAAC-CCGCATGTGAT----AA----AAATAA--CATCTTATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
finalCons : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCGGT--------CCG-AAAA-CCATATTCN------CAT-ATCAGACCGG-CGTGCAAAAATGCATATCAA--TCCGGAAA-TTACGT---ATTC---------GCTCGTAACA--ATCAACGTAT-C-AAAGTTT---TA--ACCATGTAATNAGAG-----------------TTTTTACCGTA-GTA---AAT-AAATGTA----TG-AGATTTTT------ACTATA---GTTTATNATAAT-TAATGCACATTAAT---------------------GTATCGA-AG-NTTTACCATTACA-------GTAAATC-AATGTAGCCAT-GT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATNAAG-GTTT-----TA--TA-CT--ATAGTAAAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCG--AAAAGC-----CCGCATGTGATAG--------AAATAA--CATCTTATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATGATTATGTCGATTTTGTACTGTGCAATGCAGATGACATCATAGTAACCAAT
Alignments
lowQualScore : 1111 1111 11111111 1111111111111 111111111 666666666666666666666666666 1111 111 2222222222222 1111 111 5555555555555555555555 3333333 1 999999999999999999999999999 11111 444444444 1 11 1 777777777777777777777777777777 11 22222222222222222222 44444444 111111111111 1
lowQualScore : 1 1 5 2222 3 2222 00000000 66 5 2 7777777777777 2 3 2 55 3 6666 444444444 1 55 1 7 3 777 999999999999999999999999999 0000 000 77 1 2222222222222 7777 1 000 1 33 3 0000000000000000000000 6 1 2222222 0 444444444444444444444444444 33333 1 3 1 8 000000000 0 33 5 0 8 1 0 000000000000000000000000000000 11 22 22222222222222222222 1 1 6 22222222 777777777777 7 7 3 7
lowQualScore : . . . .... . .... ........ .. . . ............. . . . .. . .... ......... . .. . . . ... ........................... .... ... .. . ............. .... . ... . .. . ...................... . . ....... . ........................... ..... . . . . ......... . .. . . . . . .............................. .. .. .................... . . . ........ ............ . . . .
lowQualScore : 0 7 0 5555 8 1111 44444444 33 0 5 4444444444444 9 5 9 00 6 7777 555555555 2 00 8 3 6 000 000000000000000000000000000 6666 000 00 4 0000000000000 9999 1 000 9 55 5 5555555555555555555555 7 0 5555555 0 222222222222222222222222222 00000 0 2 0 0 222222222 0 88 0 8 0 0 8 666666666666666666666666666666 00 44 44444444444444444444 0 0 7 77777777 777777777777 3 3 3 3
consensus : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCG--------GTCCG--AAAA-C-CATA-T----T-CGCATA-TCAGACCGG-CGTGCAAAAATGCATATCAA--TCCGGAAA-TTACGT---ATTC---------GCTCGTA--ACAATCAACGTAT-C-AAAGTTT---TAACCAT-G--T-AA-TNA-------GA-G----TTTTTAC----CGTAGTA---AAT-AAATGTA----TG-AG-A-TTTTT----ACCATA---GTTTATNATAATTAATG---CACA-TTA--GT------GTATCGA-AGNTTTACCATTACA-------GTAAATC-AATGTAGCCAT-GT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATNAAG-GTTT-----TA--TA-CT--ATAGTAAAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCGAAA-----AG--A--CCCGCATGTGAT-AAAAAAAATAA--CATCTTATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
Reference ( family-1159 ) : NNNATGGTACNTATACCGATTCTGCACCGCGCGAT-ACGGGTGACGTCACA----ATAGCCGATATCAAC----GACCG--------GTCCG--AAAA-C-CATA-T----T-CNCATA-TCAGACCGG-CGTGCAAAAATGCATATCAA--TCCGGAAA-TTACGT---ATTC---------GCTCGTA--ACAATCAACGTAT-C-AAAGTTT---TAACCAT-G--T-AA-TNA-------GA-G----TTTTTAC----CGTAGTA---AAT-AAATGTA----TG-AG-A-TTTTT----ACTATA---GTTTATNATAATTAATG---CACA-TTA--AT------GTATCGA-AGNTTTACCATTACA-------GTAAATC-AATGTAGCCAT-GT--------ACCTTGGTTTTTACCAGATAAAATCATTGTATNAAG-GTTT-----TA--TA-CT--ATAGTAAAGTAATGTATCA-AATATTNCTTGATGTACCTTTAAAATGCGAAA-----AG-----CCCGCATGTGAT----AGAAATAA--CATCTTATAAGATC-GGCCTCGTA--CCATATCNAAANACGACCA---T----TTAACACTATCCATACGCCGTTCGTATGCAATATTTT-AAGCATGAAAAGAGTGCAGTATACGACAA
gi|1 : ATGATATATATACC--TGCTTCACTGCACGAT-ATGGATGACGTCTCA----TTAGCCAATATGAGC----GACCG--------GTCCG--AAAA-C-CATA-TTTAAT-TCCATA-TCAGACCGG-CGTGCTAAAACCCATTTCAA--TCCGGAAG-TTACGT---CGTC---------GTTTGTGACACAATCACCGTAT-C-AAAGATT---TTACCATAA--TAAA-TCAATGTGTTGATG----TTTTTAC----TGTAGTA---AA--AAATGTA----TG-AG-A--TTTT----ACTATA---GTTTACCATAGTTAAT---------CT---GT------GTATCAA-AGCTTTACCATTATA-------GTTAATCTAAT-T-GCCAGAGTCCCCCCCCCCCTT--TTTCTACCAGCTTTTATCATTATATAAAGTGTTT-----TATTTA-CT--TTAGTAAA-TAATTCATCA-AATATTCCTTTATGTACCTTAAAAATGCGGAA-----AGTAA--CCCGCGTGTGAT----AAAAATGA--TATTTTATAAAGTC-AGCCT------TCATTTCAAAATAAGAAAA---TAAAATCGAAACTA-----ATGCCGTTCGTATGCAATATTTTCAAGCATG-AAAGAGTGCAGTATACGACAA
gi|10 : tggAAATCACT--ATTAAG-GTTTACATGTA--TAACTTGATAGGAAA-TAATGTATCA-ATTATTGCTTGATGTACCTTTAAAATGCGAA-------------CCCACATGTGAT----AAAAAAAAATCATCTT------TC-GGACTTATA--CCATATCTAAAGACGACCA---T----TTAACACTATCTATACACTGTTCGTATGCAATA-TTT-AAGGATGAAAAat
gi|11 : GTGATGTCACAT---ATA--TAATATTGAC----GACCA--------GTCCA--AAAC-C-CAT--T----T-CACGTA-TCGGACCAG-TGTGCAAAAGTCCACAT
gi|11 : ----GACCA--------GTG-G--AAAA-T-CACA-T----TTCACGTG-TCAGACCAG-TGTGCAAAAATACACAttcacatatggaccagtggaaaatcacatttcacgtgtcagaccagtgtgcaaaaatacacagttcacgtatcagaccagtgtgcaaaa
gi|11 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacatatgTGTCA------GACCA--------GTGTGCAAAAA-TACACAGT----T-CACGTA-TCAGACCAG-TGTGCAAAAgttcacgtatcagaccagtgtgcaaaa
gi|12 : gtgatgtcacatatataatattgacgaccagtccaaaacccatttcacgtatcggaccagtgtgcaaaagtccacatttcacatatggaccagtggaaaatcacatttcacgGATTCTACACTGTGCGAT-TCAAATGACGTCACA----ATTGCAGATATCAGC----AACTG--------ATACG--A---------------------ATA-TTATACTGG-TGTGCAAAAATGTATCTCAA--ACCAGAAA-TTATGT---ATTC---------GCTCATA--
gi|13 : tatattacaatactgcattTATCA-AATATTGCTTGATATACCTTTAAAGTGCGAAA-----AGGTAACTCCGCATATAACAAAAAGAAATAA--CAAATTAAAAGATC-AGCCTC
gi|14 : taccatataaATAGTACTTGTACCAATTCTACACTGTGCAATTATGGATGTCATCACATGCAATTGCCAATATCAAC----GACCA--------GTCCG--AAAA-C-Ctgaactccattttaa
gi|15 : atcatatactttG--AAAATC-CTTG-T----T-AACCTA---AGACTGTTCGTGCAAAA-TGCATACCAA--TCCGAAAA-TTACGT---ATTC---------GGT-GTA--ACATTCAACGTACGCAAAAGTTC---Tcaatgtgcaaaaat
gi|16 : AAT-C-CATA-T----T--GCATA-TCAGACAGG-CATGCAAAAATCCATATCAA--TCTGGAAA-TTAGGT---ATTC---------GCTCATA--ACAATCAACATAT-T-AAAGTTTTACTAATCAT-G--cttatcatggcatt
gi|17 : --AAAA-C-CATA-T----T-C-CATA-TCAGACCGA-CATGCAAAAATGCAATTCAA--TTTGGAAA-TTATGT---ATTT---------GCTTGTA--AGAATCAACATAT-C-g
gi|18 : CGATTCTGCACCGCACAAT-ATGGATTACATAACA----ATAGCCAATATCACC----GATCG--------GTC
gi|19 : atatgcttggtaatgattttgtTATACCAATTCTGCACCTAGCGAT-ACGAGTGACTTCACA----ATAGACGAGACCAGC----GACCT--------GTCTGA-AAAA-C-CTTA-T----taga
gi|2 : TGTGCTGATTCCGCACCTCACAAT-ATGAGTGATGTCACA----ATAGCTCACATCAAC----GACTG--------GTCCA--AAAG-C-C-------------CATA-TCAGAATGG-CGTGCAAAAGTGCATTTCA-------GAAA-TTACATATAATTC---------ACTCGTA--AC-AT-------T-C-AAAGTTT---TAACCATGG--TAAA-TCC-------AA-G----TTTTTAC----CGTATTA---AAT-CAATGTA----TGAAA-A-TTTTTAACAATTATAATGGTTAATTATAATCAATGTATCACAGTTA--TTACCACAGTATCGA-AGATTTACCATTACA-------GTACATC-AAT-----CAT-GT--------ACCTTGGTTTTTACC-----ACACCACTGTATCAAG-CTTT-----T---TA-CC--ACAGTAAAGTAATGT-TTATAATATTCCTTGATATACC-ATAAAATGCGAAAAAAGTAA-----CCTACATATGATTAAAAAGAACAA--CATTTCATAAAATCAGATCCCAGACTCCATATCAAA
gi|21 : tatacatgataatatgacTATGCCGATTCTGCACTGCGCGAT-TCGGATGACGTCATG----ATACCCGATATtttt
gi|3 : GCTGATATCAATTTATGACCG--------TTCCG--AAAA-A-CCTC-A----T-CACATA-TCGGACCAG-TGTGCAGAAATGTGTATCAA--TCCGGAAA-TTACGT---GTTC---------ACTTGTA--ACAGTCAACCTTA-C-AAAGATT---TTACCAT-GG-T-AAATTA-------GG-G----TTTTTTC----TGTAGTATTTAAT-AAATGTACATTTG-AG-AATTTTT----ACCAAA---GTTTA--ATAA---ATA---TA-A-TTA--AT------GTATCAA-AACTT
gi|4 : GTATAC-AACGTTT---TAAACAT-G--T-A--TGA-------GA-A----TTTTTAC----CATAGTT---GAT-AAgccgctgtatcgcagat
gi|4 : ctaaATGTA----TG-AG-AATTTTT----ACCATA---GTTGATAATAATTATTG---TATA-TTTCTAT------GTATCGA-AGATTTACCATTACAGTAATCTGTAAATC-AATGTACCTAT-AT--------A----GG--TTTACCAAAGAAAATCATTGTATGAAA-GATT-----taattattgtatatttctatgtatcgaagatttaccattacagtaatctgtaaatcaatgtacctatataggtttaccaaagaaaatcattgtatgaaagattgcttgacgtgcattttaaaaaaaagaacttaaaacattttataaaatcgtacgtatcaaattttaaaaaccat
gi|5 : ctaagtatacaacgttttaaacAT-ACAGGTGACATCACA----ATAGCCGATATCAAC----GACCGGTGTCCCAGTCCT--AAAACC-CATA------T-CGCATT-TCAGACTTA-CGTGCAAAAATGCATA--AA--ATAGGAAACTTATGC---ATTT---------GCTCATA--ACAATCAACGTCT-C-AATATTT---TAACCAT-A--TGAA-TTT-------AA-G----TTTTTAC----CGTAGTA---AAT-CAACGTG----TG-AGAA-TTGTT----ATCATT---GTTAATgcttgacgtgcattttaaaaaaaagaacttaaaacattttataaaatcgtacgtatcaaattttaaaaaccat
gi|6 : actgtA-AGATTTACCATTGTA-------GTAAATC-AATGTAGCTA--GT---------------CTTTTATCAGATAAAATCATTGTATTGAG-GTTT-----T---TA-CT--ATAGTAAAGTAATGTATGA-AATGTTTCTTGATGTACTTCTAAAATGCAA------------------------------AGAAATAT--CAGCTC-CAGGA-----CTCCGTA--TCAAATTTTAAAAC--CCAACGT----TTAAC----TCCATA--CCGTTCGTGTACA--ATTTG-AAGCCTGAAAAAAGTGCAATATATGATAAgtgtcagtttttaccaa
gi|7 : aGTCGATATCACCTTCTGACCG--------GTCCG--CCAA-C-CCTA-T----T-CCCATAATCAGAC-GG-CTCGCAAAAATGCATATCAAAGTATGGAAA-TGATGT----TTCAGCTCATGGGCTCATA--GGAGACAATATAT-C-AAAGTTT---TAATCA-------A---------------------TTTTACTGTACGTAGTA---AAT-CA------------------TTAT----ACAATA---GTTTATAATAATTAATA---CACA-T----GT------ATATTAATAGCTTTACC
gi|8 : ----ATAGCCGGTATCACC----GAACG--------GTCCG--AAAC-C-CATA-T----T-C-CATA-ACTGACCGC-CGTACAAAAATGCATATCAA--TTCAGAAA-TGACGT---ATTC---------GCCAATA--AGAATCAACATAT-C-AACGTTT---AAACCAT-GGTT-AA-TAA-------AA-GTTTTTTTTTAC----TGTAtt
gi|9 : AGCTGATGTCAAC----GACCT--------GTCAA--AAAA-C-CCTA-T------CGCTTA-TCAGAC------TGAAAAACTGCATATCAA--TCCGGAAA-TTACGT---GTTT---------GCTCGTA--ACAATCAACATGT-T--AAGTTT---GAACCAT-G--------------------G----TTTTTAC----TGTAGTC---AGTCAAATG-A----T---A-A-TTTTTA---ATTACA---AATTGTG--AATTA------CAAA-TTA--acaccgaaccaaagcttgataatcaaaaaccatcacaataatacttacaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATGATTATGTCGATTTTGTACTGTGCAATGCAGATGACATCATAGTAACCAAT