lowQualScore : 11111111111111111111111111111111111111111111 111111111111111111111111111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 444444 111 00000000000000000000000000000000000000000000 1 3333333 5555555555555555 1 3 4 1 4 222222222222222222222222222 1 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
lowQualScore : 8 444444 0 3 666 11111111111111111111111111111111111111111111 1 4444444 77 3333333333333333 0 0 6 0 7 6 0 000000000000000000000000000 6 5 6 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6
lowQualScore : . ...... . . ... ............................................ . ....... .. ................ . . . . . . . ........................... . . . . ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .
lowQualScore : 3 000000 2 2 000 22222222222222222222222222222222222222222222 2 0000000 66 8888888888888888 6 2 0 0 0 0 0 000000000000000000000000000 0 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0
consensus : NNNNNTGTTCAAAAGAAAAG-TACAGCGAAAGACGG-G-TATTTCCGA--CTGTATGT-AAATAGAAT-AACA--TAGCAACGCT--GTGT-AACNTTGTGTCA-------ATTAACGTTAAAT-----A-ATCG-TTACAGGATGGAT-CACATTCCCCGTG-TGTCAGAAGTTC-TGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAA-CTTCAGA--AGGATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACTTATATCTACATGGGANA-CCTCTGANACCTNCCCNCGGGATTCGCCAGATTCACANCTACTCACCACCGTCAAATAACCAANNCCGAATCGTC--GTGGGNTCA--T--TNA-T-TTGAGAGAAATAATA---CTGTATAC-ATTTCAAGTTCATTACTC-CGGATGAGACANCNNCGANNNTTTGGANGGATNNAACGTNNNNNCCCCGTGAAGGNTGCAGAACCTGCATGCGNGTGCCCGTGTCACAACTTCACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGCGCAATAGCATCAGTTNNTCANCAAACCTGTCATAATGNTGTATTGTCATNTCAGATGCGTTTGATGATCAATGTNCTNATAT----AAC--TTCCATGTCACT-----AAAAGCGCAGT-----CTCAC-GTTCTGT--GTC-----AAAGAAA--AGAGATACG--CCATTGACAGG------NCANATAAATCNACAATGGTTAGGATATCCTAAGTTCAAAGGTGTTTGGGTTGTGTGTNATCTGAATGGNTATGCTGTTATANTAGGCGNNGTGCTCACTCTGTATCGATAACCCGG--TAGGCATATCCAANNANCCCNGCGCTAACCGGTCACACAAGAATTAGNGATATAANGCCAGAGACTCTTCTGCACGACAACCC----CCATATCATG
Reference ( gi|1 ) : TTATTTATTCAAATGAAAAAATACAACGAAAGACGG-A-TATTTCCGAAGCTGTATGTAAAATAGAATGGACAGTTAGCAATGC---GTAT-AACTTTGTGTCA-------ATTAACATTTTAT-----G-ATCGCTTACAGTATGGATACACATTCCCCGCGCTATCTGAAATTCCTGTATAGATGCGGTGTTG-GTCAGTGAGC---TGGGACCCGACAGAAGTGACCTTCAGAAGAGAATCTAGTG-GA-CACAGC-GGATATGATCAC--AGAATCTTC-CAGAGACTTAAAAAAAAAAGATCATTAAGAAA-TA----ATGCTGA-GT-GGTAGTTTAAGGGAGGATTCAAGGTTAAATCA-TCCG-ACATGGATTCCATGTCGTTGGTGTCTTTGACTGAGGA-AAGGCTGATAATGTCGAGATGTCT-CAGTCCGATG---------TTTTATCATGCCCCTCCAACATGTCACTTATATCTATAT-GGATAGCCTCTGATA-CTCCCCCCGGGATTCGCCAGATT-ACAGCCA-TCA-CACGGACAAAT------TTCAGGATCG-CGAGTAAGATCAATT--TCA-TACTGACAGAAACAACAC--CTGTATTC-ATTTCAAGTTCCTTACTTACGAATG-GAT-TCCTCAATGC-TCGAAAGG-TCAAACTTCCACACTCCGC-AAAATTG-AGA--TTAC-TACGGGT-TCCGTGTCATAACTTCATGCTTGGATCTCAGGAATATGATATCGTA-TACGCTTTCCAATTCCCGTCATTGGCCATTCACCAGCCC-TCCCTGGGGT--CTGATACTGTTGAGTA-CGTACATAGGCCACT-GCGACGTAGTGTATTAC-AACAATG--TCACGAAAGATTTCATGTTTTTCCTATCGCAAGCCGACAGACAATAGACAAAACTCAGACTTGGAGGTGGAGAATTTAATTATTCACAAGCGGAAGCAAAAGCTAGTTACGCATATGAACCATTCGTACCAGTTTCTCTTGACGGATGCATGAAAATAATTTTAGAAGGAAATTATACTGACGAATGCTGCTGTCTGTATTTCTGAAAATATATTATCTTATAAGAATTCGAAGAAAGTATAACAAGTCCTTGGATTACCATCAAACACTGCTCAACAACGTATGGTTTGTTTCAAATCTTTGCGATGCAAGTGTGTACTTATACCGAGTTACCTTACCCCAAATTTCTTTATTCCGGAGAGAACATACATTTCGCAGGATAAAGTTATCGGGGGCAAACAAAAGATGTCTCTGGTTATCAAAA-GTATAGAGAAGAAAACAAGTTTACAAGAAATGGG-CTTTGCATTTCTGTTAACATAGTCCCCTCTCAGAGAGATTTTCTAAATCCGCC---TCTGCTGATCCACTCT-TTGTTCAATGCA-ACAGGGAAG--TACC-TCAAGTCAGAGATAGATATA-GAT-TTGCTTTCTATTATTGAAGTACCATATG---TAACAGTTCTCAGAAGGTTA--TCAAATTTTCCTTTGTAACATGAA--GCCGTTTTAAACGCAATAG-ATC-GATAATC-TCACACCTGTCAT---GTTAGATTGTCATT----ATG-GCT----G--TAA-GTGCTCATATTGTCGAC--TTCAGCGTCACT-----AAAAGCACAAT-----CTTAG-ATTCTGT--GTC-----ACACAAAGAAGAGATACG--CCATTGA-AGG------ATAGATAAATTCAC-AT-GTTAGG---T--T-AGTTCTAA---GT---AG-TGCGTATA--CTG-ATGGTT---TTAT--T-TTACGCGTTAT----AC-GTGTA-CG-TA--CCGGTTTAG--ATAT-CAGCAAG--CGGCA-TAACCTGTC-C---AG-A-TAGAG---TGAAG-CAGAGACTC-TC------ACAACCCATTACTATATCATG
gi|3 : TGTTCAAAAGGAAAG-TACA-CGAAA-ACGG-G-TATTTCCAA--CTAGATG----ATA-AATAGACATTT-GCAA-----------AACTGTGTGTAAT------ATTAACGTTAAAG-----A-ATT--CTACATGATG--TATACATTCCCCGTG-TGTCAGAAGTTC-TGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAA-CTTCAGA--AGGATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACT--TATCTACATGGGATA-CCTCTGAAACCTCCCCACGGGATTCGCC-GATTCACACTTACTCACCACCGTCAAATAACCAATTTTG--TCG-T---TGAAGTCA--T--TAG-T--TGAGAGAAATAATA---CTGTTTACAATTTCAAGTTAATTACTC-CGGATGAGAC-ACTATGAAGCTTTGGAGAA-TGGAACGTAATCATCCCATGAAGGTTGCA-----TACATGCACGTGCCCGTGTCACAACTTCACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACA
gi|6 : ttaTATTCAAATGAAAAA-TACA-CGAA-GACGG-A-TATTTCCGAA--TGTATGT-AAATAGAATGTGCA--TAGCAATGC---GTAT-AAC-TTGTGTCA-------ATTAACA-TTTAT-----GAATCG-TTACAGTATGGAT-CACATTCCC
gi|11 : acaaaacttataaggcgattttttcaacaagatttacgtctatgatttgttactgttatcgttcacatttgactgattatagtgatttatacaaccgcatctggtagttttcaattttctatcaattgaattttactgaaatgttttaTTTAAAAGAAAAG---TAGCCAAAGATGG-GGTATTTCCAATTCTCTAT---AAATAGAA----CA---AGCAACGCTACGTGT-CACTTTAC-TCACTTCATGATTAGCGTTAAAG-----A-ATCA-TTACTGGATGGAT-CACATTCCC
gi|13 : ttgttatcAAGAAAAGTAGCAAAAGACGGGA-TATTCCCGA--TTGTCTAT-CAATAGAA--AAC-----GCAAAGCT--ATGT-GAAATTGTGTCA-------TTTAAT-TTGTATTAAACA-ATCG-TTACAGGATGGAT-CACATTCCC
gi|14 : GACGG-G-TATTTCCGA--TTGTCTATAAA-TAGACTCAACAA-----AACCC---G-ATGAACATTGTGTCA-------ATAAGCATTAAAT-----A-ATCG-GTATAAAATGGAT-CACATTCCCCGTG-TATCAGAA
gi|7 : CACTTAT--CTATAT-GGAGA-CCTCTGATA-C-ACCCCCAGGATTCGCCAGATT-ACAACTACTTA-CACCGTCAAAT------AACCGAATTGTC--GTGGGCTCA-----TTA-T-TGGAGAGAAATAATG---TTGTATAC-ATTTCAAGTTCATTACTC-CGGATG-
gi|10 : aTCAGTTCCTCACTATTGA-AGAGA-AACACTTCTGAATAT-ATTTCAAGTTCACTAC-TACGAATGAGATATCACCAATCA-TTGAATGGATCTAAC--CCGGCCTTTG---AAGGTG-AGAACCTGC--ACGG---TCCAT-TCACAACagaaaccatgaatttttgaatggaattaatccagncggatgagaaaccatgaagttttgaatggaagtaatccagcccatgaaggtgagaacatgcacggtccgtgtcacaactacactcttctgtc
gi|2 : tgaccttattgTTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGTTCA-TAGCATCAGTTATTC-TCAAA--TGTCAT---AATAT-TTGT-ATTTCAGATA-GTTTGATA--CAATGTGCTGATAT----AAC--TTCCATGTCACT-----AAAAGGGCA-------CCCAGTGTTCTATTGGTC-----AAAGAAA--AGAGATACA--CCCTTGACAGG------TCACATAAATCAACAATGGTTAGA---TCCT-AGTTCAAAAGTGT---GGTTGTGTATC--TTGAATGGGT---TTATTAT-TTA-GCGTGGT----ACTCTGTA-GA-TA--CCGG--TAGGCATAT-CAAACAGCCCCGC--TAA-CTGTT-CACAAG-ATTAGAG---TAAAGCCAGAGACTCTTC------ACAACC-----CCATATCATGgtacaccttacct
gi|8 : CGTAATAG-ATC-ATTTATTAGCA-ACCTGTCATAATGTTGTATT-TCATG----ATGCGTT----GATCAATGTCCTTATAT-----ACATTTCCATGTCATT-----GAAAGCACAGT-----GT-AT-GTTC-GT--GTC-----AAAGAAA-AAGAGATACG--TCATTGATAGG------tgtttagctgtagacagcagagatacagtgagggcagtaggtggtcgtcttatggttaactaagtttagagggcgttggcaagatctattgatttcgaatagatggtttacctatattgaagaattaggttggagcagaagtcaagttgaaatgaacggaatgggtgttttatcttatctccctttgtgtgattgtgcacaatgctgtctgtctttatcactaacagactaggtaaggtcacaatatctacaggcactgacgacctaaccacgctactgctactatgatgatgggagcatatcgccacctcaatatctccagagaactgggcctggagctactggggtcatgtcaaacattctgtggggatcgggggacttacacggggcgttacggtcttatgaagagtcacttagacatataccacattacaaaatacagctagccacggaagctagaattgatttggttcgtaaacaattacaagacaatgctcggatgacaaaataa
gi|4 : ttttcactgagtaacgaagaaaactggcaatggatctctcgtcaacaaatgAC--TTCCATGTCACTTACTAAAAAGCACAATGTCTACTCCC-ATTGT-T--GTCAAAGGACACACAG--GAGATACAATCCA-TGACAGGTCCCCAATAAAT---TTCAC-ATGGTTAGGATAT--TAAGTTCAAAG--GTTTGGG-TGTGTGTAATCTG-ATGGTTATGCTGT--TAATAGGCGGTGTGCTCAC-TTGTATCGATAACCCGG--TAG--ATATCCAACGAT--TAGCGCTAACTGGTCAC---AGAA-TAGCGATATAATG-CAGAAACTC-TCTGCACGACAACTCtcaata
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): AATGGAGACGGATGGATTATTTTTATGTTTTACTCCCTTTGTAAACATGTACTTGCTATCCTGTCCCTATGTCACAGTATCTACGGTCAGTGATAATGTCTCTACCACCTCATGTATCATTCTCAAAGATGATGGGAAATACGTACATTTAAATAATCGAGTGTCTGGCAGATACTAGGAATCTCTGTCAACATGTAGTAGGGGACGGACCGGGGTGTTACAGTCTTATCAATTGCCACCTAGCAATATCACAAAATAACAAACAGCCTCGGAAGCTAGAATTGATGTCAAATTACAATCAGATGTCTGCACATATGATCGACAGAACAGTTTTTATATGCATAATAAAGATGCAG
Unaligned ( gi|9 ): TCAGTGAAATGAACGGAATGGGTGTTTTATCTTTATCTCCCTTTGTGATTGTGCACATGCTGTCTGTCCTATGTCACTACAGACTAGGTAACAGGTCACAATATCTACAGGCACTGACAGACCTACACACGCTACTGCTCTATGATGATGGGACATACGCACCTCTATTCTCCAGAGAACTGTCCTGGCAG
Unaligned ( gi|12 ): GGTCAGTCTATGTTAACTAAGTTTAGGAAGCCTTGGACAAGATTTATTGCTTTCTATAAAGATTTTACCTATATTGAAGAGTTAAAGTTGGAACAAGAAGTCAGTGATATGAACGGAATAGAGGTTTT
Unaligned ( gi|15 ): CCGAATGAAGATTGTATTTTATCTCCCTTTGTACATGACATGCTATCTGTCCTATG
Unaligned ( gi|16 ): GCATTTCTGGTAAACATTCAATTTTCATTCACGTATATAGAGTT
Alignments
lowQualScore : 222 1 111 5555555555555 222222 2222222 11111 1 2 333 1 2 222 2 22 1 1 1 22222 1 333 55555 1 22222222 1 1 1 1 333 3333 1 22 22 2 1 333333333 2 1 111 11 2 11 66666666666666666666 11 3 1 11 1 222 333333333 1 55555555555555555555555 1 111 1 22 2 1 222 2 1 1 22 1 11 1 2 555555 22 1 22 222 22 1 333 1 11 1 11 1 22 2 2 222 4444 11 22 11 2 11 22 11 11111111 8888888888888888888 333333 22222 4444444444444 11111 33333 1 11 222 111 11 2222222 6666666666666666666666666666666666666666666 1 44444444 33333333 11 33 2 44444 6666666666666666666 2 555555555 2222
lowQualScore : 0 1 8 333 0 3 111 3 6 6 4444444444444 444444 3 7 8888888 44444 5 77 1 6 3 0 0 555 4 5 0 3 111 3 0 77 4 5 5 5 77777 5 555 4 2 00000 5 99999999 5 5 4 3 5 5 555 2 3 7777 55 5 77 44 0 5 4 999999999 0 3 3 3 7 7 0 222 1 33 1 1 7 3 1 6 33 22222222222222222222 0 1 33 0 0 3 11 0 88 0 666 22 3333 0 8 22 333333333 0 2 22222222222222222222222 2 0 9 000 5 77 2 0 4 5 3 000 2 0 3 5 4 2 5 66 77 3 5 88 3 2 4 3 5 0 777777 77 4 77 5 2 4 55 3 3 77 2 000 77 3 5 555 3 5 88 5 2 3 77 5 77 0 2 0 000 2 2222 2 88 3 77 88 66 2 7 3 44 22 44 44 99999999 6 6 4444444444444444444 7 1 1 222222 55555 2 1111111111111 44444 88888 0 33 3 6 1 444 555 44 6 0000000 7 7 0000000000000000000000000000000000000000000 5 22 33333333 11111111 88 00 3 22 00000 6 0 1111111111111111111 1 3 999999999 6 8888 7
lowQualScore : . . . ... . . ... . . . ............. ...... . . ....... ..... . .. . . . . . ... . . . . ... . . .. . . . . ..... . ... . . ..... . ........ . . . . . . ... . . .... .. . .. .. . . . ......... . . . . . . . ... . .. . . . . . . .. .................... . . .. . . . .. . .. . ... .. .... . . .. ......... . . ....................... . . . ... . .. . . . . . ... . . . . . . . .. .. . . .. . . . . . . ...... .. . .. . . . .. . . .. . ... .. . . ... . . .. . . . .. . .. . . . ... . .... . .. . .. .. .. . . . .. .. .. .. ........ . . ................... . . . ...... ..... . ............. ..... ..... . .. . . . ... ... .. . ....... . . ........................................... . .. ........ ........ .. .. . .. ..... . . ................... . . ......... . .... .
lowQualScore : 7 4 0 888 8 3 333 0 7 7 2222222222222 888888 2 5 3333333 88888 5 77 0 7 3 7 0 000 0 5 0 0 555 0 0 55 0 5 5 0 55555 5 000 0 5 00000 0 55555555 0 0 0 0 0 5 000 5 0 5555 55 5 55 00 0 5 0 555555555 0 0 0 3 3 3 7 777 0 33 0 0 3 3 0 7 33 33333333333333333333 7 0 88 2 0 0 22 0 22 8 000 00 8888 8 8 00 000000000 5 5 00000000000000000000000 5 0 2 000 5 55 5 0 0 5 0 555 5 0 0 0 0 5 0 55 55 0 5 55 0 5 0 0 5 0 555555 00 0 55 0 5 0 55 0 0 55 5 555 55 0 5 000 0 0 00 0 5 0 55 0 55 0 5 0 000 5 5555 5 00 0 55 00 00 5 3 3 00 00 77 00 77777777 7 7 0000000000000000000 3 0 0 000000 00000 0 2222222222222 55555 88888 0 88 2 5 0 555 000 77 7 7777777 3 3 7777777777777777777777777777777777777777777 0 00 77777777 77777777 33 00 3 00 33333 7 7 0000000000000000000 0 3 000000000 7 3333 3
consensus : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-T-AAATAGAAT-A-ACA--TA-GCAACGC---GTGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTATATCTATATGGGANACCTCTGATACCTCCCCCCGGGATTCGCCAGATT-ACANCTACTCACCACCGTCAAATAACC--TTC-GGATCGTC--GTGAGNTCA--TT-AT-TNGAGAGAAACAATA-CTGTATAC-ATTTCAAGTTCATTACTC-CGGATGAGATANCCACGAAGCTTTGAATGGATNNAAC-TCCNCGCCCCGTGAAGGTTG-AGAACNTGCACGCG-GTGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGTTAATC-TCAAACCTGTCATAATGTTG-ATTGTCATT---GATG-GTT-G-TG--CAATGTGCTNATAT----A-ACTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCAAAGAA-G---AA-GAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG-TA-TCCTAAGTTCAAAGGT-----GGTTGCGTGTAATC-TGAATGGTT---CTGTTAT-TTA-GCGTTGTGC--ACT-TGTA-CGATA--CCGG--TAG--ATAT-CAACGAG--CGGCGCTAACCGGTC-C---AGAA-TAGAG---TAAAG-CAGAGACTCTTC------ACAACCC----CCATATCATG
Reference ( family-11545 ) : NNNNNTGTTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--CTGTATG-T-AAATAGAAT-A-ACA--TA-GCAACGCT--GTGTAACNTTGTGTCA-------ATTAAC----GTTAAATAATCG-TTACAGGATGGAT-CACATTCCCCGTG-TGTCAGAAGTT-CTGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAA-CTTCAGA--AGGATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACTTATATCTACATGGGANACCTCTGANACCTNCCCNCGGGATTCGCCAGATTCACANCTACTCACCACCGTCAAATAACCAANNCCGAATCGTC--GTGGGNTCA--TTNAT-TTGAGAGAAATAATA-CTGTATAC-ATTTCAAGTTCATTACTC-CGGATGAGACANCNNCGANNNTTTGGANGGATNNAACGTNNNNNCCCCGTGAAGGNTGCAGAACCTGCATGCGNGTGCCCGTGTCACAACTT-CACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGCGCAATAGCATCAGTTNNTCANCAAACCTGTCATAATGNTGTATTGTCATNTCAGATGCGTTTGATGATCAATGTNCTNATAT----A-ACTTCCATGTCACT-----AAAAGCGCAGT-----CTCA-CGTTCTGT--GTCAAAGAA-----AA-GAGATACG--CCATTGACAGGNCAN--ATAAATCN-ACAATGGTTAGGATA-TCCTAAGTTCAAAGGTGTTTGGGTTGTGTGTNATC-TGAATGGNTATGCTGTTATANTAGGCGNNGTGCTCACTCTGTATCGATAACCCGG--TAGGCATATCCAANNANCCCNGCGCTAACCGGTCACACAAGAATTAGNGATATAANGCCAGAGACTCTTCTGCACGACAACCC----CCATATCATG
gi|1 : TATTCAAATGAAAAAATACAACGAAAGACGGA-TATTTCCGAAGCTGTATG-TAAAATAGAATGG-ACAGTTA-GCAATGC---GTATAACTTTGTGTCA-------ATTAAC----ATTTTATGATCGCTTACAGTATGGATACACATTCCCCGCGCTATCTGAAATTCCTGTATAGATGCGGTGTTG-GTCAGTGAGC---TGGGACCCGACAGAAGTGACCTTCAGAAGAGAATCTAGTG-GA-CACAGC-GGATATGATCAC--AGAATCTTC-CAGAGACTTAAAAAAAAAAGATCATTAAGAAA-TA----ATGCTGA-GT-GGTAGTTTAAGGGAGGATTCAAGGTTAAATCA-TCCG-ACATGGATTCCATGTCGTTGGTGTCTTTGACTGAGGA-AAGGCTGATAATGTCGAGATGTCT-CAGTCCGATG---------TTTTATCATGCCCCTCCAACATGTCACTTATATCTATATGGATAGCCTCTGATA-CTCCCCCCGGGATTCGCCAGATT-ACAGCCA-TCA-CACGGACAAAT------TTCAGGATCG-CGAGTAAGATCAATTTCATACTGACAGAAACAACACCTGTATTC-ATTTCAAGTTCCTTACTTACGAATG-GAT-TCCTCAATGCTC--GAAAGGTCAAACTTCCACACTCCGC-AAAATTG-AGA--TTAC-TACGGGT-TCCGTGTCATAACTT-CATGCTTGGATCTCAGGAATATGATATCGTA-TACGCTTTCCAATTCCCGTCATTGGCCATTCACCAGCCC-TCCCTGGGGT--CTGATACTGTTGAGTA-CGTACATAGGCCACT-GCGACGTAGTGTATTAC-AACAATG--TCACGAAAGATTTCATGTTTTTCCTATCGCAAGCCGACAGACA
gi|1 : ttattTTATCAAAA-GTATAGAGAAGAAAACAAGTTTACAAGAAATGGG-CTTTGCATTTCTGTTAACATAGTCCCCTCTCAGAGAGATTTTCTAAATCCGCC---TCTGCTGATCCACTCT-TTGTTCAATGCA-ACAGGGAAG--TACC-TCAAGTCAGAGATAGATATA-GAT-TTGCTTTCTATTATTGAAGTACCATATG---TAACAGTTCTCAGAAGGTTA--TCAAATTTTCCTTTGTAACATGAA--GCCGTTTTAAACGCAATAG-ATC-GATAATC-TCACACCTGTCAT---GTTAGATTGTCATT----ATG-----GCTG--TAA-GTGCTCATATTGTCG-ACTTCAGCGTCACT-----AAAAGCACAAT-----CTTA-GATTCTGT--GTCACACAAAG---AA-GAGATACG--CCATTGA-AGGATAG--ATAAATTC-AC-AT-GTTAGGTTAGTTCTAAGT----AG----------TGCGTATA--C-TG-ATGGTT------TTATTTTACGCGTTATAC-----GTGTA-CG-TA--CCGGTTTAG--ATAT-CAGCAAG--CGGCA-TAACCTGTC-C---AGA--TAGAG---TGAAG-CAGAGACTCTC-------ACAACCCATTACTATATCATGatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggttatcaaaagtatagagaagaaaacaagtttacaagaaatgggctttgcatttctgttaacatagtcccctctcagagagattttctaaatccgcctctgctgatccactctttgttcaatgcaacagggaagtacctcaagtcagagatagatatagatttgctttctattattgaagtaccatatgtaacagttctcagaaggttatcaaattttcctttgtaacatgaagccgttttaaacgcaatagatcgataatctcacacctgtcatgttagattgtcattatggctgtaagtgctcatattgtcgacttcagcgtcactaaaagcacaatcttagattctgtgtcacacaaagaagagatacgccattgaaggatagataaattcacatgttaggttagttctaagtagtgcgtatactgatggttttattttacgcgttatacgtgtacgtaccggtttagatatcagcaagcggcataacctgtccagatagagtgaagcagagactctcacaacccattactatatcatg
gi|10 : ttatttattcaaatgaaaaaatacaacgaaagacggatatttccgaagctgtatgtaaaatagaatggacagttagcaatgcgtataactttgtgtcaattaacattttatgatcgcttacagtatggatacacattccccgcgctatctgaaattcctgtatagatgcggtgttggtcagtgagctgggacccgacagaagtgaccttcagaagagaatctagtggacacagcggatatgatcacagaatcttccagagacttaaaaaaaaaagatcattaagaaataatgctgagtggtagtttaagggaggattcaaggttaaatcatccgacatggattccatgtcgttggtgtctttgactgaggaaaggctgataatgtcgagatgtctcagtccgatgttttatcatgcccctccaacatgtcacttatatctatatggatagcctctgatactccccccgggattcgccagattacagccatcacacggacaaatttcaggatcgcgagtaagatcaatttcatactgacagaaacaacacctgtattcatttcaagttccttacttacgaatggattcctcaatgctcgaaaggtcaaacttccacactccgcaaaattgagattactacgggttccgtgtcataacttcatgcttggatctcaggaatatgatatcgtatacgctttccaattcccgtcattggccattcaccagccctccctggggtctgatactgttgagtacgtacataggccactgcgacgtagtgtattacaacaatgtcacgaaagatttcatgtttttcctatcgcaagccgacagacaatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggTCA--CT-AT-TGAAGAGAAACACTT-CTGAATAT-ATTTCAAGTTCACTACTA-CGAATGAGATATCACCAATCA-TTGAATGGATCTAAC---CCGGCCTT-TGAAGG-TG-AGAACCTGCACG-----GTCCAT-TCACAACGTACAC-CTT
gi|11 : tgaccttattgtcagttccTTTAAAAGAAAAG-TA--GCCAAAGATGGGGTATTTCCAA--TTCTCTA-T-AAATAGAAC-A-A-------GCAACGCTACGTGTCACTTTAC-TCACTTCATGATTAGC----GTTAAAGAATCA-TTACTGGATGGAT-CACATTCCCacct
gi|13 : ttgttatcAAGAAAAG-TA--GCAAAAGACGGGATATTCCCGA--TTGTCTA-T-CAATAGAA--A-AC------GCAAAGCT--ATGTGAAATTGTGTCA-------TTTAATTTGTATTAAACAATCG-TTACAGGATGGAT-CACATTCCC
gi|14 : GACGGG-TATTTCCGA--TTGTCTA-T-AAATAGACTCA-ACA---A---AACCCG--ATG-AACATTGTGTCA-------ATAAGC----ATTAAATAATCG-GTATAAAATGGAT-CACATTCCCCGTG-TATCAGAA
gi|2 : TTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGTTC-ATAGCATCAGTTATTC-TCAAA--TGTCATAATAT----TTGT-ATTTCAGATA-GTTTGATA--CAATGTGCTGATAT----A-ACTTCCATGTCACT-----AAAAGGGCA-------CCCAGTGTTCTATTGGTCAAAGAA-----AA-GAGATACA--CCCTTGACAGGTCAC--ATAAATCA-ACAATGGTTAG---A-TCCT-AGTTCAAAAGTGT---GGTTGTGT---ATCTTGAATGGGT---TTATTAT-TTA-GCGTGGT----ACTCTGTA--GATA--CCGG--TAGGCATAT-CAAACAGCCC--CGCTAACTGTT--CACAAG-ATTAGAG---TAAAGCCAGAGACTCTTC------ACAA-CC----CCATATCATG
gi|3 : TGTTCAAAAGGAAAG-TACA-CGAAA-ACGGG-TATTTCCAA--CTAGATGAT-AAATAGA------CA--TTTGCAA----------AACTGTGTGTAAT------ATTAAC----GTTAAAGAATT--CTACATGATGTAT--ACATTCCCCGTG-TGTCAGAAGTT-CTGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAA-CTTCAGA--AGGATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACT--TATCTACATGGGATACCTCTGAAACCTCCCCACGGGATTCGCC-GATTCACACTTACTCACCACCGTCAAATAACCAATTTTG--TCGT----TGAAGTCA--TT-AG-TTGAGAGAAATAATA-CTGTTTACAATTTCAAGTTAATTACTC-CGGATGAGACA-CTATGAAGCTTTGGA-GAATGGAACGTAATCATCCCATGAAGGTTGCA-----TACATGCACGTGCCCGTGTCACAACTT-CACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACAtgtttagctgtagacagcagagatacagtgagggcagtaggtggtcgtcttatggttaactaagtttagagggcgttggcaagatctattgatttcgaatagatggtttacctatattgaagaattaggttggagcagaagtcaagttgaaatgaacggaatgggtgttttatcttatctccctttgtgtgattgtgcacaatgctgtctgtctttatcactaacagactaggtaaggtcacaatatctacaggcactgacgacctaaccacgctactgctactatgatgatgggagcatatcgccacctcaatatctccagagaactgggcctggagctactggggtcatgtcaaacattctgtggggatcgggggacttacacggggcgttacggtcttatgaagagtcacttagacatataccacattacaaaatacagctagccacggaagctagaattgatttggttcgtaaacaattacaagacaatgctcggatgacaaaataa
gi|4 : ttaAT----C-ACTTCCATGTCACTTACTAAAAAGCACAATGTCTACTCC-CATTGT-T--GTCAAAGGACACACAG-GAGATACAATCCAT-GACAGGTCCCCAATAAATTTCACA-TGGTTAGGATA-T--TAAGTTCAAAGGT--TTGGGT-GTGTGTAATC-TGA-TGGTTATGCTGTTA--ATAGGCGGTGTGCTCACT-TGTATCGATAACCCGG--TAG--ATATCCAACGAT--TAGCGCTAACTGGTCAC---AGAA-TAGCGATATAATG-CAGAAACTC-TCTGCACGACAACTC----CCA-ATC
gi|6 : ttagcataagaatttctccatattcaagacatcgggctgatgccattgtagaattgtcatatgtatcagtgttatttgctcaactggggttccgataattaattggattaatttcaatgataaaggttgaataaaaatgacagttaaataTATTCAAATGAAAAA-TACA-CGAA-GACGGA-TATTTCCGA--ATGTATG-T-AAATAGAAT-GTGCA--TA-GCAATGC---GTATAAC-TTGTGTCA-------ATTAAC----ATTTATGAATCG-TTACAGTATGGAT-CACATTCCCcatactgtggttaattaaaaagtgtaacgacagggatcagagagatgacaagctgaggcaatgtaggtggtcagtctattgtgtaacataagtttagtgaaggcattgggcaaagatctaattcgattttcgatagatggtttcccaatattggaaagcaaattaaggttatagaggcaagaagtcagtgaaatgaacggaatgggtgttttatttgta
gi|7 : acaaaacttataaggcgattttttcaacaagatttacgtctatgatttgttactgttatcgttcacatttgactgattatagtgatttatacaaccgcatctggtagttttcaattttctatcaattgaattttactgaaatgttttaA-CACTTAT--CTATATGG-AGACCTCTGATAC--ACCCCCAGGATTCGCCAGATT-ACAACTACTTAC-ACCGTCAAATAACC------GAATTGTC--GTGGGCTCA--TT-AT-TGGAGAGAAATAATG-TTGTATAC-ATTTCAAGTTCATTACTC-CGGATGAGA-AACCATGAATTTTTGAATGGA
gi|7 : -CGGATGAGA-AACCATGAAGTTTTGAATGGAAGTAA--TCCAG--CCCATGAAGG-TG-AGAACATGCACG-----GTCCGTGTCACAACTA-CACTCTTCTGTCattaatccagncggatgagaaaccatgaagttttgaatggaagtaatccagcccatgaaggtgagaacatgcacggtccgtgtcacaactacactcttctgtc
gi|8 : acacttatctatatggagacctctgatacacccccaggattcgccagattacaactacttacaccgtcaaataaccgaattgtcgtgggctcattattggagagaaataatgttgtatacatttcaagttcattactccggatgagaaaccatgaatttttgaatggaattaatccagnGCGTAATAG-ATCA-TTTATTAGCAA-CCTGTCATAATGTTGTATT-TCAT----GATGCGTT----GATCAATGTCCTTATAT----ACATTTCCATGTCATT-----GAAAGCACAGT-----GT-A-TGTTC-GT--GTCAAAGAA-----AAAGAGATACG--TCATTGATAGGTCA---ATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AATGGAGACGGATGGATTATTTTTATGTTTTACTCCCTTTGTAAACATGTACTTGCTATCCTGTCCCTATGTCACAGTATCTACGGTCAGTGATAATGTCTCTACCACCTCATGTATCATTCTCAAAGATGATGGGAAATACGTACATTTAAATAATCGAGTGTCTGGCAGATACTAGGAATCTCTGTCAACATGTAGTAGGGGACGGACCGGGGTGTTACAGTCTTATCAATTGCCACCTAGCAATATCACAAAATAACAAACAGCCTCGGAAGCTAGAATTGATGTCAAATTACAATCAGATGTCTGCACATATGATCGACAGAACAGTTTTTATATGCATAATAAAGATGCAG
Unaligned ( gi|9 ): TCAGTGAAATGAACGGAATGGGTGTTTTATCTTTATCTCCCTTTGTGATTGTGCACATGCTGTCTGTCCTATGTCACTACAGACTAGGTAACAGGTCACAATATCTACAGGCACTGACAGACCTACACACGCTACTGCTCTATGATGATGGGACATACGCACCTCTATTCTCCAGAGAACTGTCCTGGCAG
Unaligned ( gi|12 ): GGTCAGTCTATGTTAACTAAGTTTAGGAAGCCTTGGACAAGATTTATTGCTTTCTATAAAGATTTTACCTATATTGAAGAGTTAAAGTTGGAACAAGAAGTCAGTGATATGAACGGAATAGAGGTTTT
Unaligned ( gi|15 ): CCGAATGAAGATTGTATTTTATCTCCCTTTGTACATGACATGCTATCTGTCCTATG
Unaligned ( gi|16 ): GCATTTCTGGTAAACATTCAATTTTCATTCACGTATATAGAGTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1 5555555555555 22222222 2222222 11111 1 1 222 1 1 222 1 11 1 1 1 22222 1 222 22222 1 22222 1 1 1 1 1 222 2222 1 11 11 1 1 333333333 1 1 33 111 22 1 2 55555555 222 2222222 1 1 1 11 2222 3333333333333333333333333333333333333333333333333333333333333333333333333333 1 1 11 1 1 111 1 1 1 11 1 11 1 1 222222 11 1 11 222 11 1 222 1 11 1 11 1 11 1 222222 2222 11 11 11 1 11 444 2 222 1 33333 333333 22222 3333333333333 11111 1 222222 11 222 11 11 666666666 333 11111 1111111 11 2222 1 4444 1 22 11 11 11 1 333 222 1 33333 2222
lowQualScore : 1 8 333 0 3 999 1 6 6 4444444444444 22222222 3 8888888 44444 1 77 1 6 0 3 5 111 1 5 5 1 111 1 5 88 1 5 5 5 22222 5 000 1 1 66666 5 55555 5 5 5 1 1 5 5 000 1 1 2222 22 5 77 66 5 5 1 999999999 5 1 2 3 00 222 22 7 3 1 6 3 7 44444444 2 3 666 0 1 6666666 0 1 1 0 0 00 3 3333 0 2 3 9 3 22 5555555555555555555555555555555555555555555555555555555555555555555555555555 2 0 9 333 5 88 1 5 1 5 1 999 1 5 1 5 1 1 5 22 88 1 5 88 1 1 1 1 5 5 999999 22 1 88 5 2 1 22 1 1 88 1 000 88 1 5 111 1 5 88 5 1 1 66 5 88 5 1 444444 1 3333 2 88 1 88 88 22 1 7 3 7 8 44 7 333 3 999 3 33333 7 1 222222 55555 7777777777777 44444 0 555555 33 3 6 222 44 44 6 111111111 000 99999 0 9999999 44 4444 0 7 3 8888 3 00 7 88 88 88 3 3 3 6 0 000 7 333 3 7 33333 6 8888 7
lowQualScore : . . ... . . ... . . . ............. ........ . ....... ..... . .. . . . . . ... . . . . ... . . .. . . . . ..... . ... . . ..... . ..... . . . . . . . ... . . .... .. . .. .. . . . ......... . . . . .. ... .. . . . . . . ........ . . ... . . ....... . . . . . .. . .... . . . . . .. ............................................................................ . . . ... . .. . . . . . ... . . . . . . . .. .. . . .. . . . . . . ...... .. . .. . . . .. . . .. . ... .. . . ... . . .. . . . .. . .. . . ...... . .... . .. . .. .. .. . . . . . .. . ... . ... . ..... . . ...... ..... ............. ..... . ...... .. . . ... .. .. . ......... ... ..... . ....... .. .... . . . .... . .. . .. .. .. . . . . . ... . ... . . ..... . .... .
lowQualScore : 4 0 888 8 3 555 0 7 7 2222222222222 22222222 2 3333333 88888 0 77 0 7 7 3 0 000 0 5 5 0 555 0 0 00 0 5 5 0 00000 5 555 0 0 55555 0 55555 0 0 0 0 0 0 5 555 0 0 0000 00 5 55 55 0 5 0 555555555 0 0 5 3 77 777 33 3 3 0 7 3 0 22222222 0 2 222 2 0 0000000 0 0 2 0 0 22 2 5555 2 5 2 8 2 00 0000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 2 000 5 00 0 0 0 5 0 000 0 0 0 0 0 0 0 00 00 0 5 55 0 0 0 0 5 5 555555 00 0 00 0 5 0 00 0 0 00 0 555 00 0 5 000 0 0 00 0 0 0 00 0 55 5 0 555555 0 5555 5 00 0 00 00 00 0 3 3 3 3 00 3 333 3 333 3 77777 3 0 000000 00000 8888888888888 55555 0 000000 88 2 5 555 33 77 7 777777777 333 00000 7 7777777 77 0000 7 3 3 3333 3 00 3 33 33 33 3 7 7 7 7 000 3 333 3 3 33333 7 3333 3
consensus : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT--GGATTGTCG--TGAGNTC---A---TTAT-TNGAGAGAAACAATAC-TGTATAC-ATTTCAAGTTCATTACTC-CGGATGAGATATCCACGAANCTTTGAATGGATCNAAC-T-CCNCGNC----------CCGCGAAG-GTTGA---GAA-----------CNTG----------C-ACG-GGTGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGTTATTCTCAAACCTGTCATAATGTT-GTATT-TCAT-GATG-GTT--GT-CAATGTGCTNATAT----A-ACTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG-TAT--T-AGTTCAAAG--GT--GG-TGCGTGTAATC-TGAATGGTT---TTATTATTTA-GCGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
Reference ( family-11545 ) : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTATATCTATATGGGANACCTCTGATACCTCCCCCCGGGATTCGCCAGATT-ACANCTACTCACCACCGTCAAATAACC--TTC-GGATCGTCG--TGAGNTC---A---TTAT-TNGAGAGAAACAATAC-TGTATAC-ATTTCAAGTTCATTACTC-CGGATGAGATANCCACGAAGCTTTGAATGGATNNAAC-T-CCNCGCC----------CCGTGAAG-GTTGA---GAA-----------CNTG----------C-ACGCGGTGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGTTAATCTCAAACCTGTCATAATGTT-G-ATTGTCATTGATG-GTT--GTGCAATGTGCTNATAT----A-ACTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAAGA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG-TATCCTAAGTTCAAAG--GT--GGTTGCGTGTAATC-TGAATGGTT---CTGTTATTTA-GCGTTGTGC--ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTC-C-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
gi|1 : TATTCAAATGAAAAAATACAACGAAAGACGGA-TATTTCCGAAGCTGTATG-TAAAATAGAAT-GGACAGTTA-GCAATGC---G-TATAACTTTGTGTCA-------ATTAAC----ATTTTATGATCGCTTACAGTATGGATACACATTCCCCGCGCTATCTGAAATTCCTGTATAGATGCGGTGTTG-GTCAGTGAGC---TGGGACCCGACAGAAGTGACCTTCAGAAGAGAATCTAGTG-GA-CACAGCGG-ATATGATCAC--AGAATCTTC-CAGAGACTTAAAAAAAAAAGATCATTAAGAAA-TA----ATGCTGAG-TGG-TAGTTTAAGGGAGGATTCAAGGTTAAATCA-TCCGA-CATGGATTCCATGTCGTTGGTGTCTTTGACTGAGGA-AAGGCTGATAATGTCGAGATGTCT-CAGTCCGATGTTTT---------ATCATGCCCCTCCAACATGTCACTTATATCTATATGGATAGCCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACAGCCA-TCAC-ACGGACAAAT------TTCAGGATCG-CGAGTAAGATC---AATTTCATACTGACAGAAACAACACCTGTATTC-ATTTCAAGTTCCTTACTTACGAATG-GAT-TCCTCAATGCTC-GAAAGG-TCAAAC-TTCCACACT----------CCGCAAAA--TTGA---GA-------------TTA----------CTACG-GGT-TCCGTGTCATAACTT-CATGCTTGGATCTCAGGAATATGATATCGTAT-ACGCTTTCCAATTCCCGTCATTGGCCATTCACCAGCCCT-CCCTGGGGT--CTGATACTGTTGAGTAC-GTACATAGGCCACTG-CGACGTAGTGTATTACAA-CAATG--TCACGAAAGATTTCATGTTTTTCCTATCGCAAGCCGACAGACA
gi|1 : ttattTTATCAAAA-GTATAGAGAAGAAAACAAGTTTACAAGAAATGGG-CTTTGCATTTCTGTTAACATAGTCCCCTCTCAGAGAGATTTTCTAAATCCGC---CTCTGCTGATCCACTCT-TTGTTCAATGCA-ACAGGGAAG--TA-CCTCAAGTCAGAGATAGATATA-GAT-TTGCTTTCTATTATTGAAGTACCATAT---GTAACAGTTCTCAGAAGGTT--ATCAAATTTTCCTTTGTAACATGAA--GCCGTTTTAAACGCAATAG-ATC-GATAATCTCACACCTGTC---ATGTTAG-ATTGTCATT-ATG-GCT--GT--AA-GTGCTCATATTGTCG-ACTTCAGCGTCACT-----AAAAGCACAAT-----CTTA-GATTCTGT--GTCACACAAAGA----AGAGATACG--CCATTGA-AGGATAG--ATAAATTC-AC-AT-GTTAGG-T-T----AGTTCTAA---GT--AG-TGCGTATA--C-TG-ATGGTT---TTAT--TTTACGCGTTAT----ACG-TGTA-CG-TA--CCGGTTTAG--ATATC-AGCAAGCGGCA-TAACCTGTC-C-AG-ATAGAG---TGAAG-CAGAGACTC-TC-----ACAACCCATTACTATATCATGatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggttatcaaaagtatagagaagaaaacaagtttacaagaaatgggctttgcatttctgttaacatagtcccctctcagagagattttctaaatccgcctctgctgatccactctttgttcaatgcaacagggaagtacctcaagtcagagatagatatagatttgctttctattattgaagtaccatatgtaacagttctcagaaggttatcaaattttcctttgtaacatgaagccgttttaaacgcaatagatcgataatctcacacctgtcatgttagattgtcattatggctgtaagtgctcatattgtcgacttcagcgtcactaaaagcacaatcttagattctgtgtcacacaaagaagagatacgccattgaaggatagataaattcacatgttaggttagttctaagtagtgcgtatactgatggttttattttacgcgttatacgtgtacgtaccggtttagatatcagcaagcggcataacctgtccagatagagtgaagcagagactctcacaacccattactatatcatg
gi|10 : ttatttattcaaatgaaaaaatacaacgaaagacggatatttccgaagctgtatgtaaaatagaatggacagttagcaatgcgtataactttgtgtcaattaacattttatgatcgcttacagtatggatacacattccccgcgctatctgaaattcctgtatagatgcggtgttggtcagtgagctgggacccgacagaagtgaccttcagaagagaatctagtggacacagcggatatgatcacagaatcttccagagacttaaaaaaaaaagatcattaagaaataatgctgagtggtagtttaagggaggattcaaggttaaatcatccgacatggattccatgtcgttggtgtctttgactgaggaaaggctgataatgtcgagatgtctcagtccgatgttttatcatgcccctccaacatgtcacttatatctatatggatagcctctgatactccccccgggattcgccagattacagccatcacacggacaaatttcaggatcgcgagtaagatcaatttcatactgacagaaacaacacctgtattcatttcaagttccttacttacgaatggattcctcaatgctcgaaaggtcaaacttccacactccgcaaaattgagattactacgggttccgtgtcataacttcatgcttggatctcaggaatatgatatcgtatacgctttccaattcccgtcattggccattcaccagccctccctggggtctgatactgttgagtacgtacataggccactgcgacgtagtgtattacaacaatgtcacgaaagatttcatgtttttcctatcgcaagccgacagacaatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggTGACC--TT----ATTGTC-----AGTTCCTCA---CTAT-TGAAGAGAAACACTTC-TGAATAT-ATTTCAAGTTCACTACTA-CGAATGAGATAT-CACCAATCATTGAATGGATCTAA-----CCCGGC----------CTTTGAAG-G-TGA---GAA-----------CCTG----------C-ACG----GTCCAT-TCACAACGTACAC-CTT
gi|11 : TTTAAAAGAAAAG-TA--GCCAAAGATGGGGTATTTCCAA--TTCTCTA-TAAA-TAGAAC-A-A-------GCAACGCTACG-TGTCACTTTAC-TCACTTCATGATTAGC----GTTAAAGAATCA-TTACTGGATGGAT-CACATTCCCacct
gi|13 : ttgttatcAAGAAAAG-TA--GCAAAAGACGGGATATTCCCGA--TTGTCTA-TCAA-TAGAA--A-AC------GCAAAGCT--A-TGTGAAATTGTGTCA-------TTTAATTTGTATTAAACAATCG-TTACAGGATGGAT-CACATTCCC
gi|14 : GACGGG-TATTTCCGA--TTGTCTA-TAAA-TAGACTCA-ACA---A---AACCC---GATG-AACATTGTGTCA-------ATAAGC----ATTAAATAATCG-GTATAAAATGGAT-CACATTCCCCGTG-TATCAGAA
gi|2 : TTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGTTCA-TAGCATCAGTTATTCTCAAA--TGTCATAATATTTGTATT-TCA--GATA-GTTTGATACAATGTGCTGATAT----A-ACTTCCATGTCACT-----AAAAGGGCA-------CCCAGTGTTCTATTGGTCA-AAGAA-A----AGAGATACA--CCCTTGACAGGTCAC--ATAAATCA-ACAATGGTTAG---ATCCT-AGTTCAAAAGTGT--GGTTGTGT---ATCTTGAATGGGT---TTATTATTTA-GCGTGGT----ACTCTGTA--GATA--CCGG--TAGGCATATC-AAACAGCCCCGCTAACTGTTCACAAGATTAGAG---TAAAGCCAGAGACTCTTC-----ACAA-CC----CCATATCATG
gi|3 : TGTTCAAAAGGAAAG-TACA-CGAAA-ACGGG-TATTTCCAA--CTAGATGATAAA-TAGA------CA--TTTGCAA-----------AACTGTGTGTAAT------ATTAAC----GTTAAAGAATT--CTACATGATGTAT--ACATTCCCCGTG-TGTCAGAAGTTC-TGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAAC-TTCAGAAG--GATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACTTAT--CTACATGGGATACCTCTGAAACCTCCCCACGGGATTCGCC-GATTCACACTTACTCACCACCGTCAAATAACCAATT-----TTGTCGT-TGAAGTC---A---TTAG-TTGAGAGAAATAATAC-TGTTTACAATTTCAAGTTAATTACTC-CGGATGAGACA-CTATGAAGCTTTGGA-GAATGGAACGT-AATCATC----------CCATGAAG-GTTGC---ATA-----------CATG----------C-AC---GTGCCCGTGTCACAACTT-CACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACAtgtttagctgtagacagcagagatacagtgagggcagtaggtggtcgtcttatggttaactaagtttagagggcgttggcaagatctattgatttcgaatagatggtttacctatattgaagaattaggttggagcagaagtcaagttgaaatgaacggaatgggtgttttatcttatctccctttgtgtgattgtgcacaatgctgtctgtctttatcactaacagactaggtaaggtcacaatatctacaggcactgacgacctaaccacgctactgctactatgatgatgggagcatatcgccacctcaatatctccagagaactgggcctggagctactggggtcatgtcaaacattctgtggggatcgggggacttacacggggcgttacggtcttatgaagagtcacttagacatataccacattacaaaatacagctagccacggaagctagaattgatttggttcgtaaacaattacaagacaatgctcggatgacaaaataa
gi|4 : ttaAT----C-ACTTCCATGTCACTTACTAAAAAGCACAATGTCTACTCC-CATTGT-T--GTCA-AAGGACACACAGGAGATACAATCCAT-GACAGGTCCCCAATAAATTTCACA-TGGTTAGGATAT--TAAGTTCAAAG--GTTTGGGTGTGTGTAATC-TGA-TGGTTATGCTGTTAATAG-GCGGTGTGCTCACT-TGTATCGATAACCCGG--TAG--ATATCCAACGATTAGCGCTAACTGGTCAC-AGAATAGCGATATAATG-CAGAAACTCTCTGCACGACAACTC----CCA-ATC
gi|6 : ttagcataagaatttctccatattcaagacatcgggctgatgccattgtagaattgtcatatgtatcagtgttatttgctcaactggggttccgataattaattggattaatttcaatgataaaggttgaataaaaatgacagttaaataTATTCAAATGAAAAA-TACA-CGAA-GACGGA-TATTTCCGA--ATGTATG-TAAA-TAGAAT-GTGCA--TA-GCAATGC---G-TATAACTT-GTGTCA-------ATTAAC----ATTTATGAATCG-TTACAGTATGGAT-CACATTCCCcatactgtggttaattaaaaagtgtaacgacagggatcagagagatgacaagctgaggcaatgtaggtggtcagtctattgtgtaacataagtttagtgaaggcattgggcaaagatctaattcgattttcgatagatggtttcccaatattggaaagcaaattaaggttatagaggcaagaagtcagtgaaatgaacggaatgggtgttttatttgta
gi|7 : acaaaacttataaggcgattttttcaacaagatttacgtctatgatttgttactgttatcgttcacatttgactgattatagtgatttatacaaccgcatctggtagttttcaattttctatcaattgaattttactgaaatgttttaA-CACTTAT--CTATATGG-AGACCTCTGATACA--CCCCCAGGATTCGCCAGATT-ACAACTACTTAC-ACCGTCAAATAACC------GAATTGTCG--TGGGCTC---A---TTAT-TGGAGAGAAATAATGT-TGTATAC-ATTTCAAGTTCATTACTC-CGGATGAGA-AACCATGAATTTTTGAATGGAATTAA--T-CCA-GNCGGATGAGAAACCATGAAGTTTTGAATGGAAGTAATCCAGCCCATGAAGGTGAGAAC-ATGCACGGTCCGTGTCACAACTA-CACTCTTCTGTC
gi|8 : GCGTAATAG-ATCATTTATTAGCAA-CCTGTCATAATGTT-GTATT-TCAT-GATGCGTT--GATCAATGTCCTTATAT----ACATTTCCATGTCATT-----GAAAGCACAGT-----GT-A-TGTTC-GT--GTCA-AAGAAAA----AGAGATACG--TCATTGATAGGTCA---ATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AATGGAGACGGATGGATTATTTTTATGTTTTACTCCCTTTGTAAACATGTACTTGCTATCCTGTCCCTATGTCACAGTATCTACGGTCAGTGATAATGTCTCTACCACCTCATGTATCATTCTCAAAGATGATGGGAAATACGTACATTTAAATAATCGAGTGTCTGGCAGATACTAGGAATCTCTGTCAACATGTAGTAGGGGACGGACCGGGGTGTTACAGTCTTATCAATTGCCACCTAGCAATATCACAAAATAACAAACAGCCTCGGAAGCTAGAATTGATGTCAAATTACAATCAGATGTCTGCACATATGATCGACAGAACAGTTTTTATATGCATAATAAAGATGCAG
Unaligned ( gi|9 ): TCAGTGAAATGAACGGAATGGGTGTTTTATCTTTATCTCCCTTTGTGATTGTGCACATGCTGTCTGTCCTATGTCACTACAGACTAGGTAACAGGTCACAATATCTACAGGCACTGACAGACCTACACACGCTACTGCTCTATGATGATGGGACATACGCACCTCTATTCTCCAGAGAACTGTCCTGGCAG
Unaligned ( gi|12 ): GGTCAGTCTATGTTAACTAAGTTTAGGAAGCCTTGGACAAGATTTATTGCTTTCTATAAAGATTTTACCTATATTGAAGAGTTAAAGTTGGAACAAGAAGTCAGTGATATGAACGGAATAGAGGTTTT
Unaligned ( gi|15 ): CCGAATGAAGATTGTATTTTATCTCCCTTTGTACATGACATGCTATCTGTCCTATG
Unaligned ( gi|16 ): GCATTTCTGGTAAACATTCAATTTTCATTCACGTATATAGAGTT
Alignments
lowQualScore : 222 1 5555555555555 22222222 2222222 11111 1 1 222 1 1 222 1 11 1 1 1 22222 1 222 22222 1 22222 1 1 1 1 1 222 2222 1 11 11 1 1 333333333 1 1 11 111 22 1 1 44444444444444444444444 1111111 11111 11 1111 222 333333333 1 4444 1 1 11 1 1 111 1 1 1 11 1 11 1 1 222222 11 1 11 222 11 1 222 1 11 1 11 1 11 1 222222 2222 11 11 11 1 11 11 22 2222 111 11 22222 1 1 11 22222 44444444 1 11 3333333333 22222 3333333333333 11111 1 222222 11 222 11 11 222 1 1 3333 111 22 11 11 11 111 2222 1 22 11 11 11 1 1 222 1 33333 2222
lowQualScore : 1 8 333 0 3 999 1 6 6 4444444444444 22222222 3 8888888 44444 1 77 1 6 0 3 5 111 1 5 5 1 111 1 5 88 1 5 5 5 22222 5 000 1 1 66666 5 55555 5 5 5 1 1 5 5 000 1 1 2222 22 5 77 66 5 5 1 999999999 5 1 2 3 88 222 00 7 3 1 6 3 3 88888888888888888888888 1 9999999 44444 8 77 1 6 8 8 8 7777 0 555 5 22 6 0 33 999999999 888 66 3 1 0 1111 2 0 9 333 5 88 1 5 1 5 1 999 1 5 1 5 1 1 5 22 88 1 5 88 1 1 1 1 5 5 999999 22 1 88 5 2 1 22 1 1 88 1 000 88 1 5 111 1 5 88 5 1 1 66 5 88 5 1 444444 1 3333 2 88 1 88 88 22 1 7 0 3 33 33 44 1111 777 33 11111 0 0 33 11111 11111111 9 0 33 1 4444444444 55555 7777777777777 44444 0 333333 33 3 6 222 44 44 6 777 3 2 5555 999 00 44 11 88 666 8888 3 00 7 88 88 88 3 3 3 6 0 7 3 7 333 3 7 33333 6 8888 7
lowQualScore : . . ... . . ... . . . ............. ........ . ....... ..... . .. . . . . . ... . . . . ... . . .. . . . . ..... . ... . . ..... . ..... . . . . . . . ... . . .... .. . .. .. . . . ......... . . . . .. ... .. . . . . . . ....................... . ....... ..... . .. . . . . . .... . ... . .. . . .. ......... ... .. . . . .... . . . ... . .. . . . . . ... . . . . . . . .. .. . . .. . . . . . . ...... .. . .. . . . .. . . .. . ... .. . . ... . . .. . . . .. . .. . . ...... . .... . .. . .. .. .. . . . . .. .. .. .... ... .. ..... . . .. ..... ........ . . .. . .......... ..... ............. ..... . ...... .. . . ... .. .. . ... . . .... ... .. .. .. .. ... .... . .. . .. .. .. . . . . . . . . ... . . ..... . .... .
lowQualScore : 4 0 888 8 3 555 0 7 7 2222222222222 22222222 2 3333333 88888 0 77 0 7 7 3 0 000 0 5 5 0 555 0 0 00 0 5 5 0 00000 5 555 0 0 55555 0 55555 0 0 0 0 0 0 5 555 0 0 0000 00 5 55 55 0 5 0 555555555 0 0 5 3 33 777 77 3 3 0 7 3 8 44444444444444444444444 0 0000000 00000 0 00 4 0 0 0 0 0000 8 666 0 44 0 8 55 555555555 888 55 2 0 0 8888 5 0 2 000 5 00 0 0 0 5 0 000 0 0 0 0 0 0 0 00 00 0 5 55 0 0 0 0 5 5 555555 00 0 00 0 5 0 00 0 0 00 0 555 00 0 5 000 0 0 00 0 0 0 00 0 55 5 0 555555 0 5555 5 00 0 00 00 00 0 3 0 2 88 88 22 2222 000 88 55555 0 0 22 55555 22222222 8 0 88 0 5555555555 00000 8888888888888 55555 0 000000 88 2 5 555 33 77 7 777 3 0 3333 000 00 77 33 33 777 3333 3 00 3 33 33 33 3 7 7 7 7 3 3 3 333 3 3 33333 7 3333 3
consensus : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT--G-AT---TGTC--GT-GAGNTC---A---TTAT-TC--GA-GAGAAACAATA-CTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGATATCCACGAATCTTTGAATGGATNNAAC-TCCNCGNCCCGTGAAGGTTGAGAACNTGC-ACGG-TGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--GTT-G---TA-TT-TCA-TGAT---G-GTT--GA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG-T-TTA-GTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
Reference ( family-11545 ) : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT--GGAT---TGTC--GT-GAGNTC---A---TTAT-TN--GA-GAGAAACAATA-CTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGATATCCACGAANCTTTGAATGGATCNAAC-TCCNCGNCCCGCGAAGGTTGAGAACNTGC-ACGGGTGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--GTT-G---TA-TT-TCA-TGAT---G-GTT--G--T-CAATGTG-C--TNATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG-TATTA-GTTCAAAGGT---GGTG--CGTGTAATCTGAATGGTTTTATTATT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
gi|1 : TATTCAAATGAAAAAATACAACGAAAGACGGA-TATTTCCGAAGCTGTATG-TAAAATAGAAT-GGACAGTTA-GCAATGC---G-TATAACTTTGTGTCA-------ATTAAC----ATTTTATGATCGCTTACAGTATGGATACACATTCCCCGCGCTATCTGAAATTCCTGTATAGATGCGGTGTTG-GTCAGTGAGC---TGGGACCCGACAGAAGTGACCTTCAGAAGAGAATCTAGTG-GA-CACAGCGG-ATATGATCAC--AGAATCTTC-CAGAGACTTAAAAAAAAAAGATCATTAAGAAA-TA----ATGCTGAG-TGG-TAGTTTAAGGGAGGATTCAAGGTTAAATCA-TCCGA-CATGGATTCCATGTCGTTGGTGTCTTTGACTGAGGA-AAGGCTGATAATGTCGAGATGTCT-CAGTCCGATGTTTT---------ATCATGCCCCTCCAACATGTCACTTATATCTATATGGATAGCCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACAGCCA-TCAC-ACGGACAAAT------TTCAGGAT---CG-CGAGT-AAGATC---AATTTCATACT--GA-CAGAAACAACACCTGTATTCA-TTTCAAGTTCC-TTACTTAC----GAATG-GAT-TCCTC-AATGCTCGAAAGG-TCAAACTTCCACACTCCGC-AAAATTGAGA--TTACTACGGGT-TCCGTGTCATAACTT-CATGCTTGGATCTCAGGAATATGATATCGTA-TACGCTTTCCAATTCCCGTCATTGGCCATTCACCAGCCC-TCCCTGGGGT--CTGATACTGTTGAGTA-CGTACATAGGCCACT-GCGACGTAGTGTATTAC-AACAATG--TCACGAAAGATTTCATGTTTTTCCTATCGCAAGCCGACAGACA
gi|1 : ttattTTATCAAAA-GTATAGAGAAGAAAACAAGTTTACAAGAAATGGG-CTTTGCATTTCTGTTAACATAGTCCCCTCTCAGAGAGATTTTCTAAATCCGC---CTCTGCTGATCCACTCT-TTGTTCAATGCA-ACAGGGAAG--TA-CCTCAAGTCAGAGATAGATATA-GAT-TTGCTTTCTATTATTGAAGTACCATAT---GTAACAGTTCTCAGAAGGTT--ATCAAATTTTCCTTTGTAACATGAA--GCCGTTTTAAACGCAATAG-ATC-GA--TAAT--CTCACACCTG----TC-----AT--GTT-A---GA-TTGTCA-TTAT---G-GCT--G--T--AA-GTG-C--TCATATTGTCG-A---CTTCAGCGTCACT-----AAAAGCACAAT-----CTTA-GATTCTGT--GTCACACAAAGA----AGAGATACG--CCATTGA-AGGATAG--ATAAATTC-AC-AT-GTTAGG---TTA-GTTCTAA-GT---AGTG--CGTATA--CTG-ATGGTTTTAT--TT--TACG-CGTTAT----ACG-TGTA-CG-TA--CCGGTTTAG--ATATC-AGCAAGCGGCA-TAACCTGTC-C-AG-ATAGAG---TGAAG-CAGAGACTC-TC-----ACAACCCATTACTATATCATGatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggttatcaaaagtatagagaagaaaacaagtttacaagaaatgggctttgcatttctgttaacatagtcccctctcagagagattttctaaatccgcctctgctgatccactctttgttcaatgcaacagggaagtacctcaagtcagagatagatatagatttgctttctattattgaagtaccatatgtaacagttctcagaaggttatcaaattttcctttgtaacatgaagccgttttaaacgcaatagatcgataatctcacacctgtcatgttagattgtcattatggctgtaagtgctcatattgtcgacttcagcgtcactaaaagcacaatcttagattctgtgtcacacaaagaagagatacgccattgaaggatagataaattcacatgttaggttagttctaagtagtgcgtatactgatggttttattttacgcgttatacgtgtacgtaccggtttagatatcagcaagcggcataacctgtccagatagagtgaagcagagactctcacaacccattactatatcatg
gi|10 : ttatttattcaaatgaaaaaatacaacgaaagacggatatttccgaagctgtatgtaaaatagaatggacagttagcaatgcgtataactttgtgtcaattaacattttatgatcgcttacagtatggatacacattccccgcgctatctgaaattcctgtatagatgcggtgttggtcagtgagctgggacccgacagaagtgaccttcagaagagaatctagtggacacagcggatatgatcacagaatcttccagagacttaaaaaaaaaagatcattaagaaataatgctgagtggtagtttaagggaggattcaaggttaaatcatccgacatggattccatgtcgttggtgtctttgactgaggaaaggctgataatgtcgagatgtctcagtccgatgttttatcatgcccctccaacatgtcacttatatctatatggatagcctctgatactccccccgggattcgccagattacagccatcacacggacaaatttcaggatcgcgagtaagatcaatttcatactgacagaaacaacacctgtattcatttcaagttccttacttacgaatggattcctcaatgctcgaaaggtcaaacttccacactccgcaaaattgagattactacgggttccgtgtcataacttcatgcttggatctcaggaatatgatatcgtatacgctttccaattcccgtcattggccattcaccagccctccctggggtctgatactgttgagtacgtacataggccactgcgacgtagtgtattacaacaatgtcacgaaagatttcatgtttttcctatcgcaagccgacagacaatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggTGACC--TT----AT---TGTC------AGTTCCTCA---CTAT-TG--AA-GAGAAACACTT-CTGAATATA-TTTCAAGTTCA-CTACTA-C----GAATGAGATAT-CACCAATCATTGAATGGATCTAA----CCCGGCCTTTGAAGG-TGAGAACCTGC-ACG---GTCCAT-TCACAACGTACAC-CTT
gi|11 : TTTAAAAGAAAAG-TA--GCCAAAGATGGGGTATTTCCAA--TTCTCTA-TAAA-TAGAAC-A-A-------GCAACGCTACG-TGTCACTTTAC-TCACTTCATGATTAGC----GTTAAAGAATCA-TTACTGGATGGAT-CACATTCCCacct
gi|13 : ttgttatcAAGAAAAG-TA--GCAAAAGACGGGATATTCCCGA--TTGTCTA-TCAA-TAGAA--A-AC------GCAAAGCT--A-TGTGAAATTGTGTCA-------TTTAATTTGTATTAAACAATCG-TTACAGGATGGAT-CACATTCCC
gi|14 : GACGGG-TATTTCCGA--TTGTCTA-TAAA-TAGACTCA-ACA---A---AACCC---GATG-AACATTGTGTCA-------ATAAGC----ATTAAATAATCG-GTATAAAATGGAT-CACATTCCCCGTG-TATCAGAA
gi|2 : TTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGTTCA-TAGCATCAGT--TATT--CTCAAA--TG----TC--ATAAT--ATTTG---TA-TT-TCA--GAT---A-GTTTGA--TACAATGTG-C--TGATAT----A-A---CTTCCATGTCACT-----AAAAGGGCA-------CCCAGTGTTCTATTGGTCA-AAGAA-A----AGAGATACA--CCCTTGACAGGTCAC--ATAAATCA-ACAATGGTTAGA-TCCTA-GTTCAAAAGT----GTGGTTGTGTATCTTGAATGGGTTTATTATT--TA-G-CGTGGT----ACTCTGTA--GATA--CCGG--TAGGCATATC-AAACAGCCCCGCTAACTGTTCACAAGATTAGAG---TAAAGCCAGAGACTCTTC-----ACAA-CC----CCATATCATG
gi|3 : TGTTCAAAAGGAAAG-TACA-CGAAA-ACGGG-TATTTCCAA--CTAGATGATAAA-TAGA------CA--TTTGCAA-----------AACTGTGTGTAAT------ATTAAC----GTTAAAGAATT--CTACATGATGTAT--ACATTCCCCGTG-TGTCAGAAGTTC-TGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAAC-TTCAGAAG--GATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACTTAT--CTACATGGGATACCTCTGAAACCTCCCCACGGGATTCGCC-GATTCACACTTACTCACCACCGTCAAATAACCAATT-----T---TGTC--GTTGAAGTC---A---TTAG-TT--GA-GAGAAATAATA-CTGTTTACAATTTCAAGTTAA-TTACTC-C----GGATGAGACA-CTATGAAGCTTTGGA-GAATGGAACGTAATCATCCCATGAAGGTTGCATACATGC-ACG--TGCCCGTGTCACAACTT-CACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACAtgtttagctgtagacagcagagatacagtgagggcagtaggtggtcgtcttatggttaactaagtttagagggcgttggcaagatctattgatttcgaatagatggtttacctatattgaagaattaggttggagcagaagtcaagttgaaatgaacggaatgggtgttttatcttatctccctttgtgtgattgtgcacaatgctgtctgtctttatcactaacagactaggtaaggtcacaatatctacaggcactgacgacctaaccacgctactgctactatgatgatgggagcatatcgccacctcaatatctccagagaactgggcctggagctactggggtcatgtcaaacattctgtggggatcgggggacttacacggggcgttacggtcttatgaagagtcacttagacatataccacattacaaaatacagctagccacggaagctagaattgatttggttcgtaaacaattacaagacaatgctcggatgacaaaataa
gi|4 : tta-ATCAGTGTTATTTGCTCAA--CTGGGGTTCCGATAATTAATT-GGATTAATT-TCAATGATAAAG-GTT--GAAT-AAAAATGACAGTTAAAT----A-ATCACTTCCATGTCACTTACTAAAAAGCACAATGTCTACTCC-CATTGT-T--GTCA-AAGGACACACAGGAGATACAATCCAT-GACAGGTCCCCAATAAATTTCACA-TGGTTAGGATATTAAGTTCAAAGGTTTGGGTG--TGTGTAATCTGA-TGGTTATGCTGTTAATA-GGCGGTGTGCTCACT-TGTATCGATAACCCGG--TAG--ATATCCAACGATTAGCGCTAACTGGTCAC-AGAATAGCGATATAATG-CAGAAACTCTCTGCACGACAACTC----CCA-ATC
gi|6 : ttagcataagaatttctccatattcaagacatcgggctgatgccattgtagaattgtcatatgtTATTCAAATGAAAAA-TACA-CGAA-GACGGA-TATTTCCGA--ATGTATG-TAAA-TAGAAT-GTGCA--TA-GCAATGC---G-TATAACTT-GTGTCA-------ATTAAC----ATTTATGAATCG-TTACAGTATGGAT-CACATTCCCcatactgtggttaattaaaaagtgtaacgacagggatcagagagatgacaagctgaggcaatgtaggtggtcagtctattgtgtaacataagtttagtgaaggcattgggcaaagatctaattcgattttcgatagatggtttcccaatattggaaagcaaattaaggttatagaggcaagaagtcagtgaaatgaacggaatgggtgttttatttgta
gi|7 : acaaaacttataaggcgattttttcaacaagatttacgtctatgatttgttactgttatcgttcacatttgactgattatagtgatttatacaaccgcatctggtagttttcaattttctatcaattgaattttactgaaatgttttaA-CACTTAT--CTATATGG-AGACCTCTGATAC--ACCCCCAGGATTCGCCAGATT-ACAACTACTTAC-ACCGTCAAATAACC------GAAT---TGTC--GT-GGGCTC---A---TTAT-TG--GA-GAGAAATAATG-TTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGA-AACCATGAATTTTTGAATGGA
gi|7 : AAATAATG--TT--GTATACATTTC--A---AGTTC---A---TTAC-TCCGGATGAGAAACCAT----GAAT----TTTTGAATGGAATTAATC-CAGNCGGATGAGAAA-CCATGAAGTTTTGAATGGAAGTAA--TCCA--GCCCATGAAGGT-GAGAACATGC-ACGG---TCCGTGTCACAACTA-CACTCTTCTGTCattaatccagncggatgagaaaccatgaagttttgaatggaagtaatccagcccatgaaggtgagaacatgcacggtccgtgtcacaactacactcttctgtc
gi|8 : acacttatctatatggagacctctgatacacccccaggattcgccagattacaactacttacaccgtcaaataaccgaattgtcgtgggctcattattggagagGCGTAATAG-ATCATT--TATT--AGCAA-CCTG----TC--ATAAT--GTT-G---TA-TT-TCA-TGAT---GCGTT--GA-T-CAATGTC-C--TTATAT----ACA---TTTCCATGTCATT-----GAAAGCACAGT-----GT-A-TGTTC-GT--GTCA-AAGAAAA----AGAGATACG--TCATTGATAGGTCA---ATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AATGGAGACGGATGGATTATTTTTATGTTTTACTCCCTTTGTAAACATGTACTTGCTATCCTGTCCCTATGTCACAGTATCTACGGTCAGTGATAATGTCTCTACCACCTCATGTATCATTCTCAAAGATGATGGGAAATACGTACATTTAAATAATCGAGTGTCTGGCAGATACTAGGAATCTCTGTCAACATGTAGTAGGGGACGGACCGGGGTGTTACAGTCTTATCAATTGCCACCTAGCAATATCACAAAATAACAAACAGCCTCGGAAGCTAGAATTGATGTCAAATTACAATCAGATGTCTGCACATATGATCGACAGAACAGTTTTTATATGCATAATAAAGATGCAG
Unaligned ( gi|9 ): TCAGTGAAATGAACGGAATGGGTGTTTTATCTTTATCTCCCTTTGTGATTGTGCACATGCTGTCTGTCCTATGTCACTACAGACTAGGTAACAGGTCACAATATCTACAGGCACTGACAGACCTACACACGCTACTGCTCTATGATGATGGGACATACGCACCTCTATTCTCCAGAGAACTGTCCTGGCAG
Unaligned ( gi|12 ): GGTCAGTCTATGTTAACTAAGTTTAGGAAGCCTTGGACAAGATTTATTGCTTTCTATAAAGATTTTACCTATATTGAAGAGTTAAAGTTGGAACAAGAAGTCAGTGATATGAACGGAATAGAGGTTTT
Unaligned ( gi|15 ): CCGAATGAAGATTGTATTTTATCTCCCTTTGTACATGACATGCTATCTGTCCTATG
Unaligned ( gi|16 ): GCATTTCTGGTAAACATTCAATTTTCATTCACGTATATAGAGTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1 5555555555555 22222222 2222222 11111 1 1 222 1 1 222 1 11 1 1 1 22222 1 222 22222 1 22222 1 1 1 1 1 222 2222 1 11 11 1 1 333333333 1 1 11 111 22 1 1 5555555555 222222 2222222 11 11 1 11 2222 2222222222222222222222222222222222222222222222222222222222222222222222222222 1 1 11 1 1 111 1 1 1 11 1 11 1 1 222222 11 1 11 222 11 1 222 1 11 1 11 1 11 1 222222 2222 11 11 11 1 11 11 22 2222 111 2222 111 1 1 11 22222 1 22222 1 11 3333333333 22222 3333333333333 11111 1 222222 11 222 11 11 44444 1 3333 111 33 11 11 11 111 2222 1 22 11 11 11 1 1 222 1 33333 2222
lowQualScore : 1 8 333 0 3 999 1 6 6 4444444444444 22222222 3 8888888 44444 1 77 1 6 0 3 5 111 1 5 5 1 111 1 5 88 1 5 5 5 22222 5 000 1 1 66666 5 55555 5 5 5 1 1 5 5 000 1 1 2222 22 5 77 66 5 5 1 999999999 5 1 2 3 88 222 00 7 3 1 6 3 7 3333333333 3 333333 1 6666666 66 11 0 00 3 2222 8 11 9 3 22 5555555555555555555555555555555555555555555555555555555555555555555555555555 2 0 9 333 5 88 1 5 1 5 1 999 1 5 1 5 1 1 5 22 88 1 5 88 1 1 1 1 5 5 999999 22 1 88 5 2 1 22 1 1 88 1 000 88 1 5 111 1 5 88 5 1 1 66 5 88 5 1 444444 1 3333 2 88 1 88 88 22 1 7 0 3 33 33 44 1111 777 1111 777 0 0 33 11111 0 00000 9 0 33 0 4444444444 55555 7777777777777 44444 0 333333 33 3 6 222 44 44 6 44444 2 5555 999 88 44 11 88 666 8888 3 00 7 88 88 88 3 3 3 6 0 7 3 7 333 3 7 33333 6 8888 7
lowQualScore : . . ... . . ... . . . ............. ........ . ....... ..... . .. . . . . . ... . . . . ... . . .. . . . . ..... . ... . . ..... . ..... . . . . . . . ... . . .... .. . .. .. . . . ......... . . . . .. ... .. . . . . . . .......... . ...... . ....... .. .. . .. . .... . .. . . .. ............................................................................ . . . ... . .. . . . . . ... . . . . . . . .. .. . . .. . . . . . . ...... .. . .. . . . .. . . .. . ... .. . . ... . . .. . . . .. . .. . . ...... . .... . .. . .. .. .. . . . . .. .. .. .... ... .... ... . . .. ..... . ..... . . .. . .......... ..... ............. ..... . ...... .. . . ... .. .. . ..... . .... ... .. .. .. .. ... .... . .. . .. .. .. . . . . . . . . ... . . ..... . .... .
lowQualScore : 4 0 888 8 3 555 0 7 7 2222222222222 22222222 2 3333333 88888 0 77 0 7 7 3 0 000 0 5 5 0 555 0 0 00 0 5 5 0 00000 5 555 0 0 55555 0 55555 0 0 0 0 0 0 5 555 0 0 0000 00 5 55 55 0 5 0 555555555 0 0 5 3 33 777 77 3 3 0 7 3 0 5555555555 2 555555 0 0000000 55 22 0 22 2 5555 8 55 8 2 00 0000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 2 000 5 00 0 0 0 5 0 000 0 0 0 0 0 0 0 00 00 0 5 55 0 0 0 0 5 5 555555 00 0 00 0 5 0 00 0 0 00 0 555 00 0 5 000 0 0 00 0 0 0 00 0 55 5 0 555555 0 5555 5 00 0 00 00 00 0 3 0 2 88 88 22 2222 000 8888 555 0 0 22 55555 0 55555 8 0 88 8 5555555555 00000 8888888888888 55555 0 000000 88 2 5 555 33 77 7 00000 0 3333 000 77 77 00 33 777 3333 3 00 3 33 33 33 3 7 7 7 7 3 3 3 333 3 3 33333 7 3333 3
consensus : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---GA-TTGTC--GT-GAGNTC---A---TTATTN-GAGAGAAACAATA-CTGTATACA-TTTCAAGTTCATTACTC-CGGATGAGATATCCACGAATCTTTGAATGGATCNAAC-TCCNCGNC----------CCGTGAAG-GTTGA---GAA-----------CNTGC-ACGGTG-------------TCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
Reference ( family-11545 ) : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---GA-TTGTC--GT-GAGNTC---A---TTATTC-GAGAGAAACAATA-CTGTATACA-TTTCAAGTTCATTACTC-CGGATGAGATATCCACGAATCTTTGAATGGATNNAAC-TCCNCGNC----------CCGTGAAG-GTTGA---GAA-----------CNTGC-ACGGTG-------------TCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
gi|1 : TATTCAAATGAAAAAATACAACGAAAGACGGA-TATTTCCGAAGCTGTATG-TAAAATAGAAT-GGACAGTTA-GCAATGC---G-TATAACTTTGTGTCA-------ATTAAC----ATTTTATGATCGCTTACAGTATGGATACACATTCCCCGCGCTATCTGAAATTCCTGTATAGATGCGGTGTTG-GTCAGTGAGC---TGGGACCCGACAGAAGTGACCTTCAGAAGAGAATCTAGTG-GA-CACAGCGG-ATATGATCAC--AGAATCTTC-CAGAGACTTAAAAAAAAAAGATCATTAAGAAA-TA----ATGCTGAG-TGG-TAGTTTAAGGGAGGATTCAAGGTTAAATCA-TCCGA-CATGGATTCCATGTCGTTGGTGTCTTTGACTGAGGA-AAGGCTGATAATGTCGAGATGTCT-CAGTCCGATGTTTT---------ATCATGCCCCTCCAACATGTCACTTATATCTATATGGATAGCCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACAGCCA-TCAC-ACGGACAAAT------TTCAGGA-TCG-CGAGT-AAGATC---AATTTCATACTGACAGAAACAACACCTGTATTCA-TTTCAAGTTCCTTACTTACGAATG-GAT-TCCTC-AATGCTCGAAAGG-TCAAACTTCCACACT----------CCGC-AAA-ATTGA---GA-------------TTACTACGGGT-------------TCCGTGTCATAACTT-CATGCTTGGATCTCAGGAATATGATATCGTA-TACGCTTTCCAATTCCCGTCATTGGCCATTCACCAGCCC-TCCCTGGGGT--CTGATACTGTTGAGTA-CGTACATAGGCCACT-GCGACGTAGTGTATTAC-AACAATG--TCACGAAAGATTTCATGTTTTTCCTATCGCAAGCCGACAGACA
gi|1 : ttattTTATCAAAA-GTATAGAGAAGAAAACAAGTTTACAAGAAAT-GGGCTTTGCATTTCTGTTAACATAGTCCCCTCTCAGAGAGATTTTCTAAATCCGC---CTCTGCTGATCCACTCT-TTGTTCAATGCA-ACAGGGAAG--TA-CCTCAAGTCAGAGATAGATATA-GAT-TTGCTTTCTATTATTGAAGTACCATAT---GTAACAGTTCTCAGAAGGTT--ATCAAATTTTCCTTTGTAACATGAA--GCCGTTTTAAACGCAATAG-ATC-GA--TAAT--CTCACACCTG----TC-----AT--G-TTA---GA-TTGTCA-TTAT---G-G-CTG----TAA-GTG-C--TCATATTGTCG-A---CTTCAGCGTCACT-----AAAAGCACAAT-----CTTA-GATTCTGT--GTCACACAAAGA----AGAGATACG--CCATTGA-AGGATAG--ATAAATTC-AC-AT-GTTAGG-----TTAGTTCTAA-GT---AGTG--CGTATA--CTG-ATGGTTTTAT--TT--TACG-CGTTAT----ACG-TGTA-CG-TA--CCGGTTTAG--ATATC-AGCAAGCGGCA-TAACCTGTC-C-AG-ATAGAG---TGAAG-CAGAGACTC-TC-----ACAACCCATTACTATATCATGatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggttatcaaaagtatagagaagaaaacaagtttacaagaaatgggctttgcatttctgttaacatagtcccctctcagagagattttctaaatccgcctctgctgatccactctttgttcaatgcaacagggaagtacctcaagtcagagatagatatagatttgctttctattattgaagtaccatatgtaacagttctcagaaggttatcaaattttcctttgtaacatgaagccgttttaaacgcaatagatcgataatctcacacctgtcatgttagattgtcattatggctgtaagtgctcatattgtcgacttcagcgtcactaaaagcacaatcttagattctgtgtcacacaaagaagagatacgccattgaaggatagataaattcacatgttaggttagttctaagtagtgcgtatactgatggttttattttacgcgttatacgtgtacgtaccggtttagatatcagcaagcggcataacctgtccagatagagtgaagcagagactctcacaacccattactatatcatg
gi|10 : ttatttattcaaatgaaaaaatacaacgaaagacggatatttccgaagctgtatgtaaaatagaatggacagttagcaatgcgtataactttgtgtcaattaacattttatgatcgcttacagtatggatacacattccccgcgctatctgaaattcctgtatagatgcggtgttggtcagtgagctgggacccgacagaagtgaccttcagaagagaatctagtggacacagcggatatgatcacagaatcttccagagacttaaaaaaaaaagatcattaagaaataatgctgagtggtagtttaagggaggattcaaggttaaatcatccgacatggattccatgtcgttggtgtctttgactgaggaaaggctgataatgtcgagatgtctcagtccgatgttttatcatgcccctccaacatgtcacttatatctatatggatagcctctgatactccccccgggattcgccagattacagccatcacacggacaaatttcaggatcgcgagtaagatcaatttcatactgacagaaacaacacctgtattcatttcaagttccttacttacgaatggattcctcaatgctcgaaaggtcaaacttccacactccgcaaaattgagattactacgggttccgtgtcataacttcatgcttggatctcaggaatatgatatcgtatacgctttccaattcccgtcattggccattcaccagccctccctggggtctgatactgttgagtacgtacataggccactgcgacgtagtgtattacaacaatgtcacgaaagatttcatgtttttcctatcgcaagccgacagacaatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggTGACC--TT----A-TTGTC------AGTTCCTCA---CTATTG-AAGAGAAACACTT-CTGAATATA-TTTCAAGTTCACTACTA-CGAATGAGATAT-CACCAATCATTGAATGGATCTAA----CCCGGC----------CTTTGAAG-G-TGA---GAA-----------CCTGC-ACG--G-------------TCCAT-TCACAACGTACAC-CTT
gi|11 : TTTAAAAGAAAAG-TA--GCCAAAGATGGGGTATTTCCAA--TTCTCTA-TAAA-TAGAAC-A-A-------GCAACGCTACG-TGTCACTTTAC-TCACTTCATGATTAGC----GTTAAAGAATCA-TTACTGGATGGAT-CACATTCCCacct
gi|13 : ttgttatcAAGAAAAG-TA--GCAAAAGACGGGATATTCCCGA--TTGTCTA-TCAA-TAGAA--A-AC------GCAAAGCT--A-TGTGAAATTGTGTCA-------TTTAATTTGTATTAAACAATCG-TTACAGGATGGAT-CACATTCCC
gi|14 : GACGGG-TATTTCCGA--TTGTCTA-TAAA-TAGACTCA-ACA---A---AACCC---GATG-AACATTGTGTCA-------ATAAGC----ATTAAATAATCG-GTATAAAATGGAT-CACATTCCCCGTG-TATCAGAA
gi|2 : TTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGTTC-ATAGCATCAGT--TATT--CTCAAA--TG----TC--ATAAT--ATTTG---TA-TT-TCA--GAT---A-GTTTGA-TACAATGTG-C--TGATAT----A-A---CTTCCATGTCACT-----AAAAGGGCA-------CCCAGTGTTCTATTGGTCA-AAGAA-A----AGAGATACA--CCCTTGACAGGTCAC--ATAAATCA-ACAATGGTTAGA---TCCTAGTTCAAAAGT----GTGGTTGTGTATCTTGAATGGGTTTATTATT--TA-G-CGTGGT----ACTCTGTA--GATA--CCGG--TAGGCATATC-AAACAGCCCCGCTAACTGTTCACAAGATTAGAG---TAAAGCCAGAGACTCTTC-----ACAA-CC----CCATATCATG
gi|3 : TGTTCAAAAGGAAAG-TACA-CGAAA-ACGGG-TATTTCCAA--CTAGATGATAAA-TAGA------CA--TTTGCAA-----------AACTGTGTGTAAT------ATTAAC----GTTAAAGAATT--CTACATGATGTAT--ACATTCCCCGTG-TGTCAGAAGTTC-TGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAAC-TTCAGAAG--GATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACTTAT--CTACATGGGATACCTCTGAAACCTCCCCACGGGATTCGCC-GATTCACACTTACTCACCACCGTCAAATAACCAATT------TTGTC--GTTGAAGTC---A---TTAGTT-GAGAGAAATAATA-CTGTTTACAATTTCAAGTTAATTACTC-CGGATGAGACA-CTATGAAGCTTTGGA-GAATGGAACGTAATCATC----------CCATGAAG-GTTGC---ATA-----------CATGC-ACG-TG-------------CCCGTGTCACAACTT-CACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACAtgtttagctgtagacagcagagatacagtgagggcagtaggtggtcgtcttatggttaactaagtttagagggcgttggcaagatctattgatttcgaatagatggtttacctatattgaagaattaggttggagcagaagtcaagttgaaatgaacggaatgggtgttttatcttatctccctttgtgtgattgtgcacaatgctgtctgtctttatcactaacagactaggtaaggtcacaatatctacaggcactgacgacctaaccacgctactgctactatgatgatgggagcatatcgccacctcaatatctccagagaactgggcctggagctactggggtcatgtcaaacattctgtggggatcgggggacttacacggggcgttacggtcttatgaagagtcacttagacatataccacattacaaaatacagctagccacggaagctagaattgatttggttcgtaaacaattacaagacaatgctcggatgacaaaataa
gi|4 : tta-ATCAGTGTTATTTGCTCAA--CTGGGGTTCCGATAATTAA-TTGGATTAATT-TCAATGATAAAG-G-TTGAAT-AAAAATGACAGTTAAAT----A-ATCACTTCCATGTCACTTACTAAAAAGCACAATGTCTACTCC-CATTGT-T--GTCA-AAGGACACACAGGAGATACAATCCAT-GACAGGTCCCCAATAAATTTCACA-TGGTTAGGATAT-TAAGTTCAAAGGTTTGGGTG--TGTGTAATCTGA-TGGTTATGCTGTTAATA-GGCGGTGTGCTCACT-TGTATCGATAACCCGG--TAG--ATATCCAACGATTAGCGCTAACTGGTCAC-AGAATAGCGATATAATG-CAGAAACTCTCTGCACGACAACTC----CCA-ATC
gi|6 : ttagcataagaatttctccatattcaagacatcgggctgatgccattgtagaattgtcatatgtTATTCAAATGAAAAA-TACA-CGAA-GACGGA-TATTTCCGA--ATGTATG-TAAA-TAGAAT-GTGCA--TA-GCAATGC---G-TATAACTT-GTGTCA-------ATTAAC----ATTTATGAATCG-TTACAGTATGGAT-CACATTCCCcatactgtggttaattaaaaagtgtaacgacagggatcagagagatgacaagctgaggcaatgtaggtggtcagtctattgtgtaacataagtttagtgaaggcattgggcaaagatctaattcgattttcgatagatggtttcccaatattggaaagcaaattaaggttatagaggcaagaagtcagtgaaatgaacggaatgggtgttttatttgta
gi|7 : acaaaacttataaggcgattttttcaacaagatttacgtctatgatttgttactgttatcgttcacatttgactgattatagtgatttatacaaccgcatctggtagttttcaattttctatcaattgaattttactgaaatgttttaA-CACTTAT--CTATATGG-AGACCTCTGATAC--ACCCCCAGGATTCGCCAGATT-ACAACTACTTAC-ACCGTCAAATAACC-------GAATTGTC--GT-GGGCTC---A---TTATTG-GAGAGAAATAATG-TTGTATACA-TTTCAAGTTCATTACTC-CGGATGAGA-AACCATGAATTTTTGAATGGAATTAA--TCCA-GNCGGATGAGAAACCATGAAGTTTTGAATGGAAGTAATCCAGCCCATG--AAGGTGAGAACATGCACGGTCCGTGTCACAACTA-CACTCTTCTGTC
gi|8 : GCGTAATAG-ATCATT--TATT--AGCAA-CCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---GCG-TTGA-T-CAATGTC-C--TTATAT----ACA---TTTCCATGTCATT-----GAAAGCACAGT-----GT-A-TGTTC-GT--GTCA-AAGAAAA----AGAGATACG--TCATTGATAGGTCA---ATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AATGGAGACGGATGGATTATTTTTATGTTTTACTCCCTTTGTAAACATGTACTTGCTATCCTGTCCCTATGTCACAGTATCTACGGTCAGTGATAATGTCTCTACCACCTCATGTATCATTCTCAAAGATGATGGGAAATACGTACATTTAAATAATCGAGTGTCTGGCAGATACTAGGAATCTCTGTCAACATGTAGTAGGGGACGGACCGGGGTGTTACAGTCTTATCAATTGCCACCTAGCAATATCACAAAATAACAAACAGCCTCGGAAGCTAGAATTGATGTCAAATTACAATCAGATGTCTGCACATATGATCGACAGAACAGTTTTTATATGCATAATAAAGATGCAG
Unaligned ( gi|9 ): TCAGTGAAATGAACGGAATGGGTGTTTTATCTTTATCTCCCTTTGTGATTGTGCACATGCTGTCTGTCCTATGTCACTACAGACTAGGTAACAGGTCACAATATCTACAGGCACTGACAGACCTACACACGCTACTGCTCTATGATGATGGGACATACGCACCTCTATTCTCCAGAGAACTGTCCTGGCAG
Unaligned ( gi|12 ): GGTCAGTCTATGTTAACTAAGTTTAGGAAGCCTTGGACAAGATTTATTGCTTTCTATAAAGATTTTACCTATATTGAAGAGTTAAAGTTGGAACAAGAAGTCAGTGATATGAACGGAATAGAGGTTTT
Unaligned ( gi|15 ): CCGAATGAAGATTGTATTTTATCTCCCTTTGTACATGACATGCTATCTGTCCTATG
Unaligned ( gi|16 ): GCATTTCTGGTAAACATTCAATTTTCATTCACGTATATAGAGTT
Alignments
lowQualScore : 222 1 5555555555555 22222222 2222222 11111 1 1 222 1 1 222 1 11 1 1 1 22222 1 222 22222 1 22222 1 1 1 1 1 222 2222 1 11 11 1 1 333333333 1 1 11 111 22 1 1 66666666666666666666666666 1111111 11111 11 1111 222 333333333 1 2222 1 1 11 1 1 111 1 1 1 11 1 11 1 1 222222 11 1 11 222 11 1 222 1 11 1 11 1 11 1 222222 2222 11 11 11 1 11 11 22 2222 111 2222 111 1 1 11 22222 1 22222 1 11 3333333333 22222 3333333333333 11111 1 222222 11 222 11 11 44444 1 3333 111 33 11 11 11 111 2222 1 22 11 11 11 1 1 222 1 33333 2222
lowQualScore : 1 8 333 0 3 999 1 6 6 4444444444444 22222222 3 8888888 44444 1 77 1 6 0 3 5 111 1 5 5 1 111 1 5 88 1 5 5 5 22222 5 000 1 1 66666 5 55555 5 5 5 1 1 5 5 000 1 1 2222 22 5 77 66 5 5 1 999999999 5 1 2 3 88 222 00 7 3 1 6 3 3 22222222222222222222222222 1 9999999 44444 8 77 1 6 8 8 8 7777 0 555 5 22 6 0 33 999999999 4 2 66 3 1 0 7777 2 0 9 333 5 88 1 5 1 5 1 999 1 5 1 5 1 1 5 22 88 1 5 88 1 1 1 1 5 5 999999 22 1 88 5 2 1 22 1 1 88 1 000 88 1 5 111 1 5 88 5 1 1 66 5 88 5 1 444444 1 3333 2 88 1 88 88 22 1 7 0 3 33 33 44 1111 777 1111 777 0 0 33 11111 0 00000 9 0 33 0 4444444444 55555 7777777777777 44444 0 333333 33 3 6 222 44 44 6 44444 2 5555 999 88 44 11 88 666 8888 3 00 7 88 88 88 3 3 3 6 0 7 3 7 333 3 7 33333 6 8888 7
lowQualScore : . . ... . . ... . . . ............. ........ . ....... ..... . .. . . . . . ... . . . . ... . . .. . . . . ..... . ... . . ..... . ..... . . . . . . . ... . . .... .. . .. .. . . . ......... . . . . .. ... .. . . . . . . .......................... . ....... ..... . .. . . . . . .... . ... . .. . . .. ......... . . .. . . . .... . . . ... . .. . . . . . ... . . . . . . . .. .. . . .. . . . . . . ...... .. . .. . . . .. . . .. . ... .. . . ... . . .. . . . .. . .. . . ...... . .... . .. . .. .. .. . . . . .. .. .. .... ... .... ... . . .. ..... . ..... . . .. . .......... ..... ............. ..... . ...... .. . . ... .. .. . ..... . .... ... .. .. .. .. ... .... . .. . .. .. .. . . . . . . . . ... . . ..... . .... .
lowQualScore : 4 0 888 8 3 555 0 7 7 2222222222222 22222222 2 3333333 88888 0 77 0 7 7 3 0 000 0 5 5 0 555 0 0 00 0 5 5 0 00000 5 555 0 0 55555 0 55555 0 0 0 0 0 0 5 555 0 0 0000 00 5 55 55 0 5 0 555555555 0 0 5 3 33 777 77 3 3 0 7 3 8 22222222222222222222222222 0 0000000 00000 0 00 4 0 0 0 0 0000 8 666 0 00 0 8 55 555555555 2 5 55 2 0 0 5555 5 0 2 000 5 00 0 0 0 5 0 000 0 0 0 0 0 0 0 00 00 0 5 55 0 0 0 0 5 5 555555 00 0 00 0 5 0 00 0 0 00 0 555 00 0 5 000 0 0 00 0 0 0 00 0 55 5 0 555555 0 5555 5 00 0 00 00 00 0 3 0 2 88 88 22 2222 000 8888 555 0 0 22 55555 0 55555 8 0 88 8 5555555555 00000 8888888888888 55555 0 000000 88 2 5 555 33 77 7 00000 0 3333 000 77 77 00 33 777 3333 3 00 3 33 33 33 3 7 7 7 7 3 3 3 333 3 3 33333 7 3333 3
consensus : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---G-----A-TTGTC--GT-GAGNTC---A---TTAT-TC--GA-GAGAAACAATA-CTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGATATCCACGAATCTTTGAATGGATNNAAC-TCCNCGNCCCGTGAAGGTTGAGAACNTGC-ACGGTGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
Reference ( family-11545 ) : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---G-----A-TTGTC--GT-GAGNTC---A---TTAT-TN--GA-GAGAAACAATA-CTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGATATCCACGAATCTTTGAATGGATCNAAC-TCCNCGNCCCGTGAAGGTTGAGAACNTGC-ACGGTGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
gi|1 : TATTCAAATGAAAAAATACAACGAAAGACGGA-TATTTCCGAAGCTGTATG-TAAAATAGAAT-GGACAGTTA-GCAATGC---G-TATAACTTTGTGTCA-------ATTAAC----ATTTTATGATCGCTTACAGTATGGATACACATTCCCCGCGCTATCTGAAATTCCTGTATAGATGCGGTGTTG-GTCAGTGAGC---TGGGACCCGACAGAAGTGACCTTCAGAAGAGAATCTAGTG-GA-CACAGCGG-ATATGATCAC--AGAATCTTC-CAGAGACTTAAAAAAAAAAGATCATTAAGAAA-TA----ATGCTGAG-TGG-TAGTTTAAGGGAGGATTCAAGGTTAAATCA-TCCGA-CATGGATTCCATGTCGTTGGTGTCTTTGACTGAGGA-AAGGCTGATAATGTCGAGATGTCT-CAGTCCGATGTTTT---------ATCATGCCCCTCCAACATGTCACTTATATCTATATGGATAGCCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACAGCCA-TCAC-ACGGACAAAT------TTCAGG-----A-TCG-CGAGT-AAGATC---AATTTCATACT--GA-CAGAAACAACACCTGTATTCA-TTTCAAGTTCC-TTACTTAC----GAATG-GAT-TCCTC-AATGCTCGAAAGG-TCAAACTTCCACACTCCGC-AAAATTGAGA--TTACTACGGGTTCCGTGTCATAACTT-CATGCTTGGATCTCAGGAATATGATATCGTA-TACGCTTTCCAATTCCCGTCATTGGCCATTCACCAGCCC-TCCCTGGGGT--CTGATACTGTTGAGTA-CGTACATAGGCCACT-GCGACGTAGTGTATTAC-AACAATG--TCACGAAAGATTTCATGTTTTTCCTATCGCAAGCCGACAGACA
gi|1 : ttattTTATCAAAA-GTATAGAGAAGAAAACAAGTTTACAAGAAAT-GGGCTTTGCATTTCTGTTAACATAGTCCCCTCTCAGAGAGATTTTCTAAATCCGC---CTCTGCTGATCCACTCT-TTGTTCAATGCA-ACAGGGAAG--TA-CCTCAAGTCAGAGATAGATATA-GAT-TTGCTTTCTATTATTGAAGTACCATAT---GTAACAGTTCTCAGAAGGTT--ATCAAATTTTCCTTTGTAACATGAA--GCCGTTTTAAACGCAATAG-ATC-GA--TAAT--CTCACACCTG----TC-----AT--G-TTA---GA-TTGTCA-TTAT---G-G-CTG----TAA-GTG-C--TCATATTGTCG-A---CTTCAGCGTCACT-----AAAAGCACAAT-----CTTA-GATTCTGT--GTCACACAAAGA----AGAGATACG--CCATTGA-AGGATAG--ATAAATTC-AC-AT-GTTAGG-----TTAGTTCTAA-GT---AGTG--CGTATA--CTG-ATGGTTTTAT--TT--TACG-CGTTAT----ACG-TGTA-CG-TA--CCGGTTTAG--ATATC-AGCAAGCGGCA-TAACCTGTC-C-AG-ATAGAG---TGAAG-CAGAGACTC-TC-----ACAACCCATTACTATATCATGatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggttatcaaaagtatagagaagaaaacaagtttacaagaaatgggctttgcatttctgttaacatagtcccctctcagagagattttctaaatccgcctctgctgatccactctttgttcaatgcaacagggaagtacctcaagtcagagatagatatagatttgctttctattattgaagtaccatatgtaacagttctcagaaggttatcaaattttcctttgtaacatgaagccgttttaaacgcaatagatcgataatctcacacctgtcatgttagattgtcattatggctgtaagtgctcatattgtcgacttcagcgtcactaaaagcacaatcttagattctgtgtcacacaaagaagagatacgccattgaaggatagataaattcacatgttaggttagttctaagtagtgcgtatactgatggttttattttacgcgttatacgtgtacgtaccggtttagatatcagcaagcggcataacctgtccagatagagtgaagcagagactctcacaacccattactatatcatg
gi|10 : ttatttattcaaatgaaaaaatacaacgaaagacggatatttccgaagctgtatgtaaaatagaatggacagttagcaatgcgtataactttgtgtcaattaacattttatgatcgcttacagtatggatacacattccccgcgctatctgaaattcctgtatagatgcggtgttggtcagtgagctgggacccgacagaagtgaccttcagaagagaatctagtggacacagcggatatgatcacagaatcttccagagacttaaaaaaaaaagatcattaagaaataatgctgagtggtagtttaagggaggattcaaggttaaatcatccgacatggattccatgtcgttggtgtctttgactgaggaaaggctgataatgtcgagatgtctcagtccgatgttttatcatgcccctccaacatgtcacttatatctatatggatagcctctgatactccccccgggattcgccagattacagccatcacacggacaaatttcaggatcgcgagtaagatcaatttcatactgacagaaacaacacctgtattcatttcaagttccttacttacgaatggattcctcaatgctcgaaaggtcaaacttccacactccgcaaaattgagattactacgggttccgtgtcataacttcatgcttggatctcaggaatatgatatcgtatacgctttccaattcccgtcattggccattcaccagccctccctggggtctgatactgttgagtacgtacataggccactgcgacgtagtgtattacaacaatgtcacgaaagatttcatgtttttcctatcgcaagccgacagacaatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggTGACC--TT---------A-TTGTC------AGTTCCTCA---CTAT-TG--AA-GAGAAACACTT-CTGAATATA-TTTCAAGTTCA-CTACTA-C----GAATGAGATAT-CACCAATCATTGAATGGATCTAA----CCCGGCCTTTGAAGG-TGAGAACCTGC-ACG--GTCCAT-TCACAACGTACAC-CTT
gi|11 : TTTAAAAGAAAAG-TA--GCCAAAGATGGGGTATTTCCAA--TTCTCTA-TAAA-TAGAAC-A-A-------GCAACGCTACG-TGTCACTTTAC-TCACTTCATGATTAGC----GTTAAAGAATCA-TTACTGGATGGAT-CACATTCCCacct
gi|13 : ttgttatcAAGAAAAG-TA--GCAAAAGACGGGATATTCCCGA--TTGTCTA-TCAA-TAGAA--A-AC------GCAAAGCT--A-TGTGAAATTGTGTCA-------TTTAATTTGTATTAAACAATCG-TTACAGGATGGAT-CACATTCCC
gi|14 : GACGGG-TATTTCCGA--TTGTCTA-TAAA-TAGACTCA-ACA---A---AACCC---GATG-AACATTGTGTCA-------ATAAGC----ATTAAATAATCG-GTATAAAATGGAT-CACATTCCCCGTG-TATCAGAA
gi|2 : TTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGTTC-ATAGCATCAGT--TATT--CTCAAA--TG----TC--ATAAT--ATTTG---TA-TT-TCA--GAT---A-GTTTGA-TACAATGTG-C--TGATAT----A-A---CTTCCATGTCACT-----AAAAGGGCA-------CCCAGTGTTCTATTGGTCA-AAGAA-A----AGAGATACA--CCCTTGACAGGTCAC--ATAAATCA-ACAATGGTTAGA---TCCTAGTTCAAAAGT----GTGGTTGTGTATCTTGAATGGGTTTATTATT--TA-G-CGTGGT----ACTCTGTA--GATA--CCGG--TAGGCATATC-AAACAGCCCCGCTAACTGTTCACAAGATTAGAG---TAAAGCCAGAGACTCTTC-----ACAA-CC----CCATATCATG
gi|3 : TGTTCAAAAGGAAAG-TACA-CGAAA-ACGGG-TATTTCCAA--CTAGATGATAAA-TAGA------CA--TTTGCAA-----------AACTGTGTGTAAT------ATTAAC----GTTAAAGAATT--CTACATGATGTAT--ACATTCCCCGTG-TGTCAGAAGTTC-TGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAAC-TTCAGAAG--GATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACTTAT--CTACATGGGATACCTCTGAAACCTCCCCACGGGATTCGCC-GATTCACACTTACTCACCACCGTCAAATAACCAATT-----------TTGTC--GTTGAAGTC---A---TTAG-TT--GA-GAGAAATAATA-CTGTTTACAATTTCAAGTTAA-TTACTC-C----GGATGAGACA-CTATGAAGCTTTGGA-GAATGGAACGTAATCATCCCATGAAGGTTGCATACATGC-ACG-TGCCCGTGTCACAACTT-CACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACAtgtttagctgtagacagcagagatacagtgagggcagtaggtggtcgtcttatggttaactaagtttagagggcgttggcaagatctattgatttcgaatagatggtttacctatattgaagaattaggttggagcagaagtcaagttgaaatgaacggaatgggtgttttatcttatctccctttgtgtgattgtgcacaatgctgtctgtctttatcactaacagactaggtaaggtcacaatatctacaggcactgacgacctaaccacgctactgctactatgatgatgggagcatatcgccacctcaatatctccagagaactgggcctggagctactggggtcatgtcaaacattctgtggggatcgggggacttacacggggcgttacggtcttatgaagagtcacttagacatataccacattacaaaatacagctagccacggaagctagaattgatttggttcgtaaacaattacaagacaatgctcggatgacaaaataa
gi|4 : tta-ATCAGTGTTATTTGCTCAA--CTGGGGTTCCGATAATTAA-TTGGATTAATT-TCAATGATAAAG-G-TTGAAT-AAAAATGACAGTTAAAT----A-ATCACTTCCATGTCACTTACTAAAAAGCACAATGTCTACTCC-CATTGT-T--GTCA-AAGGACACACAGGAGATACAATCCAT-GACAGGTCCCCAATAAATTTCACA-TGGTTAGGATAT-TAAGTTCAAAGGTTTGGGTG--TGTGTAATCTGA-TGGTTATGCTGTTAATA-GGCGGTGTGCTCACT-TGTATCGATAACCCGG--TAG--ATATCCAACGATTAGCGCTAACTGGTCAC-AGAATAGCGATATAATG-CAGAAACTCTCTGCACGACAACTC----CCA-ATC
gi|6 : ttagcataagaatttctccatattcaagacatcgggctgatgccattgtagaattgtcatatgtTATTCAAATGAAAAA-TACA-CGAA-GACGGA-TATTTCCGA--ATGTATG-TAAA-TAGAAT-GTGCA--TA-GCAATGC---G-TATAACTT-GTGTCA-------ATTAAC----ATTTATGAATCG-TTACAGTATGGAT-CACATTCCCcatactgtggttaattaaaaagtgtaacgacagggatcagagagatgacaagctgaggcaatgtaggtggtcagtctattgtgtaacataagtttagtgaaggcattgggcaaagatctaattcgattttcgatagatggtttcccaatattggaaagcaaattaaggttatagaggcaagaagtcagtgaaatgaacggaatgggtgttttatttgta
gi|7 : acaaaacttataaggcgattttttcaacaagatttacgtctatgatttgttactgttatcgttcacatttgactgattatagtgatttatacaaccgcatctggtagttttcaattttctatcaattgaattttactgaaatgttttaA-CACTTAT--CTATATGG-AGACCTCTGATAC--ACCCCCAGGATTCGCCAGATT-ACAACTACTTAC-ACCGTCAAATAACC-------G-----AATTGTC--GT-GGGCTC---A---TTAT-TG--GA-GAGAAATAATG-TTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGA-AACCATGAATTTTTGAATGGA
gi|7 : AAATAATG--TT---GTATACA-TT-TC--A---AGTTC---A---TTAC-TCCGGATGAGAAACCAT----GAAT----TTTTGAATGGAATTAATC-CAGNCGGATGAGAAA-CCATGAAGTTTTGAATGGAAGTAA--TCCA--GCCCATGAAGGT-GAGAACATGC-ACGGT--CCGTGTCACAACTA-CACTCTTCTGTCattaatccagncggatgagaaaccatgaagttttgaatggaagtaatccagcccatgaaggtgagaacatgcacggtccgtgtcacaactacactcttctgtc
gi|8 : acacttatctatatggagacctctgatacacccccaggattcgccagattacaactacttacaccgtcaaataaccgaattgtcgtgggctcattattggagagGCGTAATAG-ATCATT--TATT--AGCAA-CCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---GCG-TTGA-T-CAATGTC-C--TTATAT----ACA---TTTCCATGTCATT-----GAAAGCACAGT-----GT-A-TGTTC-GT--GTCA-AAGAAAA----AGAGATACG--TCATTGATAGGTCA---ATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AATGGAGACGGATGGATTATTTTTATGTTTTACTCCCTTTGTAAACATGTACTTGCTATCCTGTCCCTATGTCACAGTATCTACGGTCAGTGATAATGTCTCTACCACCTCATGTATCATTCTCAAAGATGATGGGAAATACGTACATTTAAATAATCGAGTGTCTGGCAGATACTAGGAATCTCTGTCAACATGTAGTAGGGGACGGACCGGGGTGTTACAGTCTTATCAATTGCCACCTAGCAATATCACAAAATAACAAACAGCCTCGGAAGCTAGAATTGATGTCAAATTACAATCAGATGTCTGCACATATGATCGACAGAACAGTTTTTATATGCATAATAAAGATGCAG
Unaligned ( gi|9 ): TCAGTGAAATGAACGGAATGGGTGTTTTATCTTTATCTCCCTTTGTGATTGTGCACATGCTGTCTGTCCTATGTCACTACAGACTAGGTAACAGGTCACAATATCTACAGGCACTGACAGACCTACACACGCTACTGCTCTATGATGATGGGACATACGCACCTCTATTCTCCAGAGAACTGTCCTGGCAG
Unaligned ( gi|12 ): GGTCAGTCTATGTTAACTAAGTTTAGGAAGCCTTGGACAAGATTTATTGCTTTCTATAAAGATTTTACCTATATTGAAGAGTTAAAGTTGGAACAAGAAGTCAGTGATATGAACGGAATAGAGGTTTT
Unaligned ( gi|15 ): CCGAATGAAGATTGTATTTTATCTCCCTTTGTACATGACATGCTATCTGTCCTATG
Unaligned ( gi|16 ): GCATTTCTGGTAAACATTCAATTTTCATTCACGTATATAGAGTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1 5555555555555 22222222 2222222 11111 1 1 222 1 1 222 1 11 1 1 1 22222 1 222 22222 1 22222 1 1 1 1 1 222 2222 1 11 11 1 1 333333333 1 1 11 111 22 1 1 5555555555 222222 2222222 11 11 1 11 2222 2222222222222222222222222222222222222222222222222222222222222222222222222222 1 1 11 1 1 111 1 1 1 11 1 11 1 1 222222 11 1 11 222 11 1 222 1 11 1 11 1 11 1 222222 2222 11 11 11 1 11 11 22 2222 111 2222 111 1 1 11 22222 1 22222 1 11 3333333333 22222 3333333333333 11111 1 222222 11 222 11 11 44444 1 3333 111 33 11 11 11 111 2222 1 22 11 11 11 1 1 222 1 33333 2222
lowQualScore : 1 8 333 0 3 999 1 6 6 4444444444444 22222222 3 8888888 44444 1 77 1 6 0 3 5 111 1 5 5 1 111 1 5 88 1 5 5 5 22222 5 000 1 1 66666 5 55555 5 5 5 1 1 5 5 000 1 1 2222 22 5 77 66 5 5 1 999999999 5 1 2 3 88 222 00 7 3 1 6 3 7 3333333333 3 333333 1 6666666 66 11 0 00 3 2222 8 11 9 3 22 5555555555555555555555555555555555555555555555555555555555555555555555555555 2 0 9 333 5 88 1 5 1 5 1 999 1 5 1 5 1 1 5 22 88 1 5 88 1 1 1 1 5 5 999999 22 1 88 5 2 1 22 1 1 88 1 000 88 1 5 111 1 5 88 5 1 1 66 5 88 5 1 444444 1 3333 2 88 1 88 88 22 1 7 0 3 33 33 44 1111 777 1111 777 0 0 33 11111 0 00000 9 0 33 0 4444444444 55555 7777777777777 44444 0 333333 33 3 6 222 44 44 6 44444 2 5555 999 88 44 11 88 666 8888 3 00 7 88 88 88 3 3 3 6 0 7 3 7 333 3 7 33333 6 8888 7
lowQualScore : . . ... . . ... . . . ............. ........ . ....... ..... . .. . . . . . ... . . . . ... . . .. . . . . ..... . ... . . ..... . ..... . . . . . . . ... . . .... .. . .. .. . . . ......... . . . . .. ... .. . . . . . . .......... . ...... . ....... .. .. . .. . .... . .. . . .. ............................................................................ . . . ... . .. . . . . . ... . . . . . . . .. .. . . .. . . . . . . ...... .. . .. . . . .. . . .. . ... .. . . ... . . .. . . . .. . .. . . ...... . .... . .. . .. .. .. . . . . .. .. .. .... ... .... ... . . .. ..... . ..... . . .. . .......... ..... ............. ..... . ...... .. . . ... .. .. . ..... . .... ... .. .. .. .. ... .... . .. . .. .. .. . . . . . . . . ... . . ..... . .... .
lowQualScore : 4 0 888 8 3 555 0 7 7 2222222222222 22222222 2 3333333 88888 0 77 0 7 7 3 0 000 0 5 5 0 555 0 0 00 0 5 5 0 00000 5 555 0 0 55555 0 55555 0 0 0 0 0 0 5 555 0 0 0000 00 5 55 55 0 5 0 555555555 0 0 5 3 33 777 77 3 3 0 7 3 0 5555555555 2 555555 0 0000000 55 22 0 22 2 5555 8 55 8 2 00 0000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 2 000 5 00 0 0 0 5 0 000 0 0 0 0 0 0 0 00 00 0 5 55 0 0 0 0 5 5 555555 00 0 00 0 5 0 00 0 0 00 0 555 00 0 5 000 0 0 00 0 0 0 00 0 55 5 0 555555 0 5555 5 00 0 00 00 00 0 3 0 2 88 88 22 2222 000 8888 555 0 0 22 55555 0 55555 8 0 88 8 5555555555 00000 8888888888888 55555 0 000000 88 2 5 555 33 77 7 00000 0 3333 000 77 77 00 33 777 3333 3 00 3 33 33 33 3 7 7 7 7 3 3 3 333 3 3 33333 7 3333 3
consensus : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---GA-TTGTC--GT-GAGNTC---A---TTATTN-GAGAGAAACAATA-CTGTATACA-TTTCAAGTTCATTACTC-CGGATGAGATATCCACGAATCTTTGAATGGATCNAAC-TCCNCGNC----------CCGTGAAG-GTTGA---GAA-----------CNTGC-ACGGTG-------------TCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
Reference ( family-11545 ) : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---GA-TTGTC--GT-GAGNTC---A---TTATTC-GAGAGAAACAATA-CTGTATACA-TTTCAAGTTCATTACTC-CGGATGAGATATCCACGAATCTTTGAATGGATNNAAC-TCCNCGNC----------CCGTGAAG-GTTGA---GAA-----------CNTGC-ACGGTG-------------TCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
gi|1 : TATTCAAATGAAAAAATACAACGAAAGACGGA-TATTTCCGAAGCTGTATG-TAAAATAGAAT-GGACAGTTA-GCAATGC---G-TATAACTTTGTGTCA-------ATTAAC----ATTTTATGATCGCTTACAGTATGGATACACATTCCCCGCGCTATCTGAAATTCCTGTATAGATGCGGTGTTG-GTCAGTGAGC---TGGGACCCGACAGAAGTGACCTTCAGAAGAGAATCTAGTG-GA-CACAGCGG-ATATGATCAC--AGAATCTTC-CAGAGACTTAAAAAAAAAAGATCATTAAGAAA-TA----ATGCTGAG-TGG-TAGTTTAAGGGAGGATTCAAGGTTAAATCA-TCCGA-CATGGATTCCATGTCGTTGGTGTCTTTGACTGAGGA-AAGGCTGATAATGTCGAGATGTCT-CAGTCCGATGTTTT---------ATCATGCCCCTCCAACATGTCACTTATATCTATATGGATAGCCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACAGCCA-TCAC-ACGGACAAAT------TTCAGGA-TCG-CGAGT-AAGATC---AATTTCATACTGACAGAAACAACACCTGTATTCA-TTTCAAGTTCCTTACTTACGAATG-GAT-TCCTC-AATGCTCGAAAGG-TCAAACTTCCACACT----------CCGC-AAA-ATTGA---GA-------------TTACTACGGGT-------------TCCGTGTCATAACTT-CATGCTTGGATCTCAGGAATATGATATCGTA-TACGCTTTCCAATTCCCGTCATTGGCCATTCACCAGCCC-TCCCTGGGGT--CTGATACTGTTGAGTA-CGTACATAGGCCACT-GCGACGTAGTGTATTAC-AACAATG--TCACGAAAGATTTCATGTTTTTCCTATCGCAAGCCGACAGACA
gi|1 : ttattTTATCAAAA-GTATAGAGAAGAAAACAAGTTTACAAGAAAT-GGGCTTTGCATTTCTGTTAACATAGTCCCCTCTCAGAGAGATTTTCTAAATCCGC---CTCTGCTGATCCACTCT-TTGTTCAATGCA-ACAGGGAAG--TA-CCTCAAGTCAGAGATAGATATA-GAT-TTGCTTTCTATTATTGAAGTACCATAT---GTAACAGTTCTCAGAAGGTT--ATCAAATTTTCCTTTGTAACATGAA--GCCGTTTTAAACGCAATAG-ATC-GA--TAAT--CTCACACCTG----TC-----AT--G-TTA---GA-TTGTCA-TTAT---G-G-CTG----TAA-GTG-C--TCATATTGTCG-A---CTTCAGCGTCACT-----AAAAGCACAAT-----CTTA-GATTCTGT--GTCACACAAAGA----AGAGATACG--CCATTGA-AGGATAG--ATAAATTC-AC-AT-GTTAGG-----TTAGTTCTAA-GT---AGTG--CGTATA--CTG-ATGGTTTTAT--TT--TACG-CGTTAT----ACG-TGTA-CG-TA--CCGGTTTAG--ATATC-AGCAAGCGGCA-TAACCTGTC-C-AG-ATAGAG---TGAAG-CAGAGACTC-TC-----ACAACCCATTACTATATCATGatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggttatcaaaagtatagagaagaaaacaagtttacaagaaatgggctttgcatttctgttaacatagtcccctctcagagagattttctaaatccgcctctgctgatccactctttgttcaatgcaacagggaagtacctcaagtcagagatagatatagatttgctttctattattgaagtaccatatgtaacagttctcagaaggttatcaaattttcctttgtaacatgaagccgttttaaacgcaatagatcgataatctcacacctgtcatgttagattgtcattatggctgtaagtgctcatattgtcgacttcagcgtcactaaaagcacaatcttagattctgtgtcacacaaagaagagatacgccattgaaggatagataaattcacatgttaggttagttctaagtagtgcgtatactgatggttttattttacgcgttatacgtgtacgtaccggtttagatatcagcaagcggcataacctgtccagatagagtgaagcagagactctcacaacccattactatatcatg
gi|10 : ttatttattcaaatgaaaaaatacaacgaaagacggatatttccgaagctgtatgtaaaatagaatggacagttagcaatgcgtataactttgtgtcaattaacattttatgatcgcttacagtatggatacacattccccgcgctatctgaaattcctgtatagatgcggtgttggtcagtgagctgggacccgacagaagtgaccttcagaagagaatctagtggacacagcggatatgatcacagaatcttccagagacttaaaaaaaaaagatcattaagaaataatgctgagtggtagtttaagggaggattcaaggttaaatcatccgacatggattccatgtcgttggtgtctttgactgaggaaaggctgataatgtcgagatgtctcagtccgatgttttatcatgcccctccaacatgtcacttatatctatatggatagcctctgatactccccccgggattcgccagattacagccatcacacggacaaatttcaggatcgcgagtaagatcaatttcatactgacagaaacaacacctgtattcatttcaagttccttacttacgaatggattcctcaatgctcgaaaggtcaaacttccacactccgcaaaattgagattactacgggttccgtgtcataacttcatgcttggatctcaggaatatgatatcgtatacgctttccaattcccgtcattggccattcaccagccctccctggggtctgatactgttgagtacgtacataggccactgcgacgtagtgtattacaacaatgtcacgaaagatttcatgtttttcctatcgcaagccgacagacaatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggTGACC--TT----A-TTGTC------AGTTCCTCA---CTATTG-AAGAGAAACACTT-CTGAATATA-TTTCAAGTTCACTACTA-CGAATGAGATAT-CACCAATCATTGAATGGATCTAA----CCCGGC----------CTTTGAAG-G-TGA---GAA-----------CCTGC-ACG--G-------------TCCAT-TCACAACGTACAC-CTT
gi|11 : TTTAAAAGAAAAG-TA--GCCAAAGATGGGGTATTTCCAA--TTCTCTA-TAAA-TAGAAC-A-A-------GCAACGCTACG-TGTCACTTTAC-TCACTTCATGATTAGC----GTTAAAGAATCA-TTACTGGATGGAT-CACATTCCCacct
gi|13 : ttgttatcAAGAAAAG-TA--GCAAAAGACGGGATATTCCCGA--TTGTCTA-TCAA-TAGAA--A-AC------GCAAAGCT--A-TGTGAAATTGTGTCA-------TTTAATTTGTATTAAACAATCG-TTACAGGATGGAT-CACATTCCC
gi|14 : GACGGG-TATTTCCGA--TTGTCTA-TAAA-TAGACTCA-ACA---A---AACCC---GATG-AACATTGTGTCA-------ATAAGC----ATTAAATAATCG-GTATAAAATGGAT-CACATTCCCCGTG-TATCAGAA
gi|2 : TTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGTTC-ATAGCATCAGT--TATT--CTCAAA--TG----TC--ATAAT--ATTTG---TA-TT-TCA--GAT---A-GTTTGA-TACAATGTG-C--TGATAT----A-A---CTTCCATGTCACT-----AAAAGGGCA-------CCCAGTGTTCTATTGGTCA-AAGAA-A----AGAGATACA--CCCTTGACAGGTCAC--ATAAATCA-ACAATGGTTAGA---TCCTAGTTCAAAAGT----GTGGTTGTGTATCTTGAATGGGTTTATTATT--TA-G-CGTGGT----ACTCTGTA--GATA--CCGG--TAGGCATATC-AAACAGCCCCGCTAACTGTTCACAAGATTAGAG---TAAAGCCAGAGACTCTTC-----ACAA-CC----CCATATCATG
gi|3 : TGTTCAAAAGGAAAG-TACA-CGAAA-ACGGG-TATTTCCAA--CTAGATGATAAA-TAGA------CA--TTTGCAA-----------AACTGTGTGTAAT------ATTAAC----GTTAAAGAATT--CTACATGATGTAT--ACATTCCCCGTG-TGTCAGAAGTTC-TGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAAC-TTCAGAAG--GATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACTTAT--CTACATGGGATACCTCTGAAACCTCCCCACGGGATTCGCC-GATTCACACTTACTCACCACCGTCAAATAACCAATT------TTGTC--GTTGAAGTC---A---TTAGTT-GAGAGAAATAATA-CTGTTTACAATTTCAAGTTAATTACTC-CGGATGAGACA-CTATGAAGCTTTGGA-GAATGGAACGTAATCATC----------CCATGAAG-GTTGC---ATA-----------CATGC-ACG-TG-------------CCCGTGTCACAACTT-CACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACAtgtttagctgtagacagcagagatacagtgagggcagtaggtggtcgtcttatggttaactaagtttagagggcgttggcaagatctattgatttcgaatagatggtttacctatattgaagaattaggttggagcagaagtcaagttgaaatgaacggaatgggtgttttatcttatctccctttgtgtgattgtgcacaatgctgtctgtctttatcactaacagactaggtaaggtcacaatatctacaggcactgacgacctaaccacgctactgctactatgatgatgggagcatatcgccacctcaatatctccagagaactgggcctggagctactggggtcatgtcaaacattctgtggggatcgggggacttacacggggcgttacggtcttatgaagagtcacttagacatataccacattacaaaatacagctagccacggaagctagaattgatttggttcgtaaacaattacaagacaatgctcggatgacaaaataa
gi|4 : tta-ATCAGTGTTATTTGCTCAA--CTGGGGTTCCGATAATTAA-TTGGATTAATT-TCAATGATAAAG-G-TTGAAT-AAAAATGACAGTTAAAT----A-ATCACTTCCATGTCACTTACTAAAAAGCACAATGTCTACTCC-CATTGT-T--GTCA-AAGGACACACAGGAGATACAATCCAT-GACAGGTCCCCAATAAATTTCACA-TGGTTAGGATAT-TAAGTTCAAAGGTTTGGGTG--TGTGTAATCTGA-TGGTTATGCTGTTAATA-GGCGGTGTGCTCACT-TGTATCGATAACCCGG--TAG--ATATCCAACGATTAGCGCTAACTGGTCAC-AGAATAGCGATATAATG-CAGAAACTCTCTGCACGACAACTC----CCA-ATC
gi|6 : ttagcataagaatttctccatattcaagacatcgggctgatgccattgtagaattgtcatatgtTATTCAAATGAAAAA-TACA-CGAA-GACGGA-TATTTCCGA--ATGTATG-TAAA-TAGAAT-GTGCA--TA-GCAATGC---G-TATAACTT-GTGTCA-------ATTAAC----ATTTATGAATCG-TTACAGTATGGAT-CACATTCCCcatactgtggttaattaaaaagtgtaacgacagggatcagagagatgacaagctgaggcaatgtaggtggtcagtctattgtgtaacataagtttagtgaaggcattgggcaaagatctaattcgattttcgatagatggtttcccaatattggaaagcaaattaaggttatagaggcaagaagtcagtgaaatgaacggaatgggtgttttatttgta
gi|7 : acaaaacttataaggcgattttttcaacaagatttacgtctatgatttgttactgttatcgttcacatttgactgattatagtgatttatacaaccgcatctggtagttttcaattttctatcaattgaattttactgaaatgttttaA-CACTTAT--CTATATGG-AGACCTCTGATAC--ACCCCCAGGATTCGCCAGATT-ACAACTACTTAC-ACCGTCAAATAACC-------GAATTGTC--GT-GGGCTC---A---TTATTG-GAGAGAAATAATG-TTGTATACA-TTTCAAGTTCATTACTC-CGGATGAGA-AACCATGAATTTTTGAATGGAATTAA--TCCA-GNCGGATGAGAAACCATGAAGTTTTGAATGGAAGTAATCCAGCCCATG--AAGGTGAGAACATGCACGGTCCGTGTCACAACTA-CACTCTTCTGTC
gi|8 : GCGTAATAG-ATCATT--TATT--AGCAA-CCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---GCG-TTGA-T-CAATGTC-C--TTATAT----ACA---TTTCCATGTCATT-----GAAAGCACAGT-----GT-A-TGTTC-GT--GTCA-AAGAAAA----AGAGATACG--TCATTGATAGGTCA---ATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AATGGAGACGGATGGATTATTTTTATGTTTTACTCCCTTTGTAAACATGTACTTGCTATCCTGTCCCTATGTCACAGTATCTACGGTCAGTGATAATGTCTCTACCACCTCATGTATCATTCTCAAAGATGATGGGAAATACGTACATTTAAATAATCGAGTGTCTGGCAGATACTAGGAATCTCTGTCAACATGTAGTAGGGGACGGACCGGGGTGTTACAGTCTTATCAATTGCCACCTAGCAATATCACAAAATAACAAACAGCCTCGGAAGCTAGAATTGATGTCAAATTACAATCAGATGTCTGCACATATGATCGACAGAACAGTTTTTATATGCATAATAAAGATGCAG
Unaligned ( gi|9 ): TCAGTGAAATGAACGGAATGGGTGTTTTATCTTTATCTCCCTTTGTGATTGTGCACATGCTGTCTGTCCTATGTCACTACAGACTAGGTAACAGGTCACAATATCTACAGGCACTGACAGACCTACACACGCTACTGCTCTATGATGATGGGACATACGCACCTCTATTCTCCAGAGAACTGTCCTGGCAG
Unaligned ( gi|12 ): GGTCAGTCTATGTTAACTAAGTTTAGGAAGCCTTGGACAAGATTTATTGCTTTCTATAAAGATTTTACCTATATTGAAGAGTTAAAGTTGGAACAAGAAGTCAGTGATATGAACGGAATAGAGGTTTT
Unaligned ( gi|15 ): CCGAATGAAGATTGTATTTTATCTCCCTTTGTACATGACATGCTATCTGTCCTATG
Unaligned ( gi|16 ): GCATTTCTGGTAAACATTCAATTTTCATTCACGTATATAGAGTT
Alignments
lowQualScore : 222 1 5555555555555 22222222 2222222 11111 1 1 222 1 1 222 1 11 1 1 1 22222 1 222 22222 1 22222 1 1 1 1 1 222 2222 1 11 11 1 1 333333333 1 1 11 111 22 1 1 66666666666666666666666666 1111111 11111 11 1111 222 333333333 1 2222 1 1 11 1 1 111 1 1 1 11 1 11 1 1 222222 11 1 11 222 11 1 222 1 11 1 11 1 11 1 222222 2222 11 11 11 1 11 11 22 2222 111 2222 111 1 1 11 22222 1 22222 1 11 3333333333 22222 3333333333333 11111 1 222222 11 222 11 11 44444 1 3333 111 33 11 11 11 111 2222 1 22 11 11 11 1 1 222 1 33333 2222
lowQualScore : 1 8 333 0 3 999 1 6 6 4444444444444 22222222 3 8888888 44444 1 77 1 6 0 3 5 111 1 5 5 1 111 1 5 88 1 5 5 5 22222 5 000 1 1 66666 5 55555 5 5 5 1 1 5 5 000 1 1 2222 22 5 77 66 5 5 1 999999999 5 1 2 3 88 222 00 7 3 1 6 3 3 22222222222222222222222222 1 9999999 44444 8 77 1 6 8 8 8 7777 0 555 5 22 6 0 33 999999999 4 2 66 3 1 0 7777 2 0 9 333 5 88 1 5 1 5 1 999 1 5 1 5 1 1 5 22 88 1 5 88 1 1 1 1 5 5 999999 22 1 88 5 2 1 22 1 1 88 1 000 88 1 5 111 1 5 88 5 1 1 66 5 88 5 1 444444 1 3333 2 88 1 88 88 22 1 7 0 3 33 33 44 1111 777 1111 777 0 0 33 11111 0 00000 9 0 33 0 4444444444 55555 7777777777777 44444 0 333333 33 3 6 222 44 44 6 44444 2 5555 999 88 44 11 88 666 8888 3 00 7 88 88 88 3 3 3 6 0 7 3 7 333 3 7 33333 6 8888 7
lowQualScore : . . ... . . ... . . . ............. ........ . ....... ..... . .. . . . . . ... . . . . ... . . .. . . . . ..... . ... . . ..... . ..... . . . . . . . ... . . .... .. . .. .. . . . ......... . . . . .. ... .. . . . . . . .......................... . ....... ..... . .. . . . . . .... . ... . .. . . .. ......... . . .. . . . .... . . . ... . .. . . . . . ... . . . . . . . .. .. . . .. . . . . . . ...... .. . .. . . . .. . . .. . ... .. . . ... . . .. . . . .. . .. . . ...... . .... . .. . .. .. .. . . . . .. .. .. .... ... .... ... . . .. ..... . ..... . . .. . .......... ..... ............. ..... . ...... .. . . ... .. .. . ..... . .... ... .. .. .. .. ... .... . .. . .. .. .. . . . . . . . . ... . . ..... . .... .
lowQualScore : 4 0 888 8 3 555 0 7 7 2222222222222 22222222 2 3333333 88888 0 77 0 7 7 3 0 000 0 5 5 0 555 0 0 00 0 5 5 0 00000 5 555 0 0 55555 0 55555 0 0 0 0 0 0 5 555 0 0 0000 00 5 55 55 0 5 0 555555555 0 0 5 3 33 777 77 3 3 0 7 3 8 22222222222222222222222222 0 0000000 00000 0 00 4 0 0 0 0 0000 8 666 0 00 0 8 55 555555555 2 5 55 2 0 0 5555 5 0 2 000 5 00 0 0 0 5 0 000 0 0 0 0 0 0 0 00 00 0 5 55 0 0 0 0 5 5 555555 00 0 00 0 5 0 00 0 0 00 0 555 00 0 5 000 0 0 00 0 0 0 00 0 55 5 0 555555 0 5555 5 00 0 00 00 00 0 3 0 2 88 88 22 2222 000 8888 555 0 0 22 55555 0 55555 8 0 88 8 5555555555 00000 8888888888888 55555 0 000000 88 2 5 555 33 77 7 00000 0 3333 000 77 77 00 33 777 3333 3 00 3 33 33 33 3 7 7 7 7 3 3 3 333 3 3 33333 7 3333 3
consensus : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---G-----A-TTGTC--GT-GAGNTC---A---TTAT-TC--GA-GAGAAACAATA-CTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGATATCCACGAATCTTTGAATGGATNNAAC-TCCNCGNCCCGTGAAGGTTGAGAACNTGC-ACGGTGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
Reference ( family-11545 ) : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---G-----A-TTGTC--GT-GAGNTC---A---TTAT-TN--GA-GAGAAACAATA-CTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGATATCCACGAATCTTTGAATGGATCNAAC-TCCNCGNCCCGTGAAGGTTGAGAACNTGC-ACGGTGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
gi|1 : TATTCAAATGAAAAAATACAACGAAAGACGGA-TATTTCCGAAGCTGTATG-TAAAATAGAAT-GGACAGTTA-GCAATGC---G-TATAACTTTGTGTCA-------ATTAAC----ATTTTATGATCGCTTACAGTATGGATACACATTCCCCGCGCTATCTGAAATTCCTGTATAGATGCGGTGTTG-GTCAGTGAGC---TGGGACCCGACAGAAGTGACCTTCAGAAGAGAATCTAGTG-GA-CACAGCGG-ATATGATCAC--AGAATCTTC-CAGAGACTTAAAAAAAAAAGATCATTAAGAAA-TA----ATGCTGAG-TGG-TAGTTTAAGGGAGGATTCAAGGTTAAATCA-TCCGA-CATGGATTCCATGTCGTTGGTGTCTTTGACTGAGGA-AAGGCTGATAATGTCGAGATGTCT-CAGTCCGATGTTTT---------ATCATGCCCCTCCAACATGTCACTTATATCTATATGGATAGCCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACAGCCA-TCAC-ACGGACAAAT------TTCAGG-----A-TCG-CGAGT-AAGATC---AATTTCATACT--GA-CAGAAACAACACCTGTATTCA-TTTCAAGTTCC-TTACTTAC----GAATG-GAT-TCCTC-AATGCTCGAAAGG-TCAAACTTCCACACTCCGC-AAAATTGAGA--TTACTACGGGTTCCGTGTCATAACTT-CATGCTTGGATCTCAGGAATATGATATCGTA-TACGCTTTCCAATTCCCGTCATTGGCCATTCACCAGCCC-TCCCTGGGGT--CTGATACTGTTGAGTA-CGTACATAGGCCACT-GCGACGTAGTGTATTAC-AACAATG--TCACGAAAGATTTCATGTTTTTCCTATCGCAAGCCGACAGACA
gi|1 : ttattTTATCAAAA-GTATAGAGAAGAAAACAAGTTTACAAGAAAT-GGGCTTTGCATTTCTGTTAACATAGTCCCCTCTCAGAGAGATTTTCTAAATCCGC---CTCTGCTGATCCACTCT-TTGTTCAATGCA-ACAGGGAAG--TA-CCTCAAGTCAGAGATAGATATA-GAT-TTGCTTTCTATTATTGAAGTACCATAT---GTAACAGTTCTCAGAAGGTT--ATCAAATTTTCCTTTGTAACATGAA--GCCGTTTTAAACGCAATAG-ATC-GA--TAAT--CTCACACCTG----TC-----AT--G-TTA---GA-TTGTCA-TTAT---G-G-CTG----TAA-GTG-C--TCATATTGTCG-A---CTTCAGCGTCACT-----AAAAGCACAAT-----CTTA-GATTCTGT--GTCACACAAAGA----AGAGATACG--CCATTGA-AGGATAG--ATAAATTC-AC-AT-GTTAGG-----TTAGTTCTAA-GT---AGTG--CGTATA--CTG-ATGGTTTTAT--TT--TACG-CGTTAT----ACG-TGTA-CG-TA--CCGGTTTAG--ATATC-AGCAAGCGGCA-TAACCTGTC-C-AG-ATAGAG---TGAAG-CAGAGACTC-TC-----ACAACCCATTACTATATCATGatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggttatcaaaagtatagagaagaaaacaagtttacaagaaatgggctttgcatttctgttaacatagtcccctctcagagagattttctaaatccgcctctgctgatccactctttgttcaatgcaacagggaagtacctcaagtcagagatagatatagatttgctttctattattgaagtaccatatgtaacagttctcagaaggttatcaaattttcctttgtaacatgaagccgttttaaacgcaatagatcgataatctcacacctgtcatgttagattgtcattatggctgtaagtgctcatattgtcgacttcagcgtcactaaaagcacaatcttagattctgtgtcacacaaagaagagatacgccattgaaggatagataaattcacatgttaggttagttctaagtagtgcgtatactgatggttttattttacgcgttatacgtgtacgtaccggtttagatatcagcaagcggcataacctgtccagatagagtgaagcagagactctcacaacccattactatatcatg
gi|10 : ttatttattcaaatgaaaaaatacaacgaaagacggatatttccgaagctgtatgtaaaatagaatggacagttagcaatgcgtataactttgtgtcaattaacattttatgatcgcttacagtatggatacacattccccgcgctatctgaaattcctgtatagatgcggtgttggtcagtgagctgggacccgacagaagtgaccttcagaagagaatctagtggacacagcggatatgatcacagaatcttccagagacttaaaaaaaaaagatcattaagaaataatgctgagtggtagtttaagggaggattcaaggttaaatcatccgacatggattccatgtcgttggtgtctttgactgaggaaaggctgataatgtcgagatgtctcagtccgatgttttatcatgcccctccaacatgtcacttatatctatatggatagcctctgatactccccccgggattcgccagattacagccatcacacggacaaatttcaggatcgcgagtaagatcaatttcatactgacagaaacaacacctgtattcatttcaagttccttacttacgaatggattcctcaatgctcgaaaggtcaaacttccacactccgcaaaattgagattactacgggttccgtgtcataacttcatgcttggatctcaggaatatgatatcgtatacgctttccaattcccgtcattggccattcaccagccctccctggggtctgatactgttgagtacgtacataggccactgcgacgtagtgtattacaacaatgtcacgaaagatttcatgtttttcctatcgcaagccgacagacaatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggTGACC--TT---------A-TTGTC------AGTTCCTCA---CTAT-TG--AA-GAGAAACACTT-CTGAATATA-TTTCAAGTTCA-CTACTA-C----GAATGAGATAT-CACCAATCATTGAATGGATCTAA----CCCGGCCTTTGAAGG-TGAGAACCTGC-ACG--GTCCAT-TCACAACGTACAC-CTT
gi|11 : TTTAAAAGAAAAG-TA--GCCAAAGATGGGGTATTTCCAA--TTCTCTA-TAAA-TAGAAC-A-A-------GCAACGCTACG-TGTCACTTTAC-TCACTTCATGATTAGC----GTTAAAGAATCA-TTACTGGATGGAT-CACATTCCCacct
gi|13 : ttgttatcAAGAAAAG-TA--GCAAAAGACGGGATATTCCCGA--TTGTCTA-TCAA-TAGAA--A-AC------GCAAAGCT--A-TGTGAAATTGTGTCA-------TTTAATTTGTATTAAACAATCG-TTACAGGATGGAT-CACATTCCC
gi|14 : GACGGG-TATTTCCGA--TTGTCTA-TAAA-TAGACTCA-ACA---A---AACCC---GATG-AACATTGTGTCA-------ATAAGC----ATTAAATAATCG-GTATAAAATGGAT-CACATTCCCCGTG-TATCAGAA
gi|2 : TTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGTTC-ATAGCATCAGT--TATT--CTCAAA--TG----TC--ATAAT--ATTTG---TA-TT-TCA--GAT---A-GTTTGA-TACAATGTG-C--TGATAT----A-A---CTTCCATGTCACT-----AAAAGGGCA-------CCCAGTGTTCTATTGGTCA-AAGAA-A----AGAGATACA--CCCTTGACAGGTCAC--ATAAATCA-ACAATGGTTAGA---TCCTAGTTCAAAAGT----GTGGTTGTGTATCTTGAATGGGTTTATTATT--TA-G-CGTGGT----ACTCTGTA--GATA--CCGG--TAGGCATATC-AAACAGCCCCGCTAACTGTTCACAAGATTAGAG---TAAAGCCAGAGACTCTTC-----ACAA-CC----CCATATCATG
gi|3 : TGTTCAAAAGGAAAG-TACA-CGAAA-ACGGG-TATTTCCAA--CTAGATGATAAA-TAGA------CA--TTTGCAA-----------AACTGTGTGTAAT------ATTAAC----GTTAAAGAATT--CTACATGATGTAT--ACATTCCCCGTG-TGTCAGAAGTTC-TGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAAC-TTCAGAAG--GATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACTTAT--CTACATGGGATACCTCTGAAACCTCCCCACGGGATTCGCC-GATTCACACTTACTCACCACCGTCAAATAACCAATT-----------TTGTC--GTTGAAGTC---A---TTAG-TT--GA-GAGAAATAATA-CTGTTTACAATTTCAAGTTAA-TTACTC-C----GGATGAGACA-CTATGAAGCTTTGGA-GAATGGAACGTAATCATCCCATGAAGGTTGCATACATGC-ACG-TGCCCGTGTCACAACTT-CACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACAtgtttagctgtagacagcagagatacagtgagggcagtaggtggtcgtcttatggttaactaagtttagagggcgttggcaagatctattgatttcgaatagatggtttacctatattgaagaattaggttggagcagaagtcaagttgaaatgaacggaatgggtgttttatcttatctccctttgtgtgattgtgcacaatgctgtctgtctttatcactaacagactaggtaaggtcacaatatctacaggcactgacgacctaaccacgctactgctactatgatgatgggagcatatcgccacctcaatatctccagagaactgggcctggagctactggggtcatgtcaaacattctgtggggatcgggggacttacacggggcgttacggtcttatgaagagtcacttagacatataccacattacaaaatacagctagccacggaagctagaattgatttggttcgtaaacaattacaagacaatgctcggatgacaaaataa
gi|4 : tta-ATCAGTGTTATTTGCTCAA--CTGGGGTTCCGATAATTAA-TTGGATTAATT-TCAATGATAAAG-G-TTGAAT-AAAAATGACAGTTAAAT----A-ATCACTTCCATGTCACTTACTAAAAAGCACAATGTCTACTCC-CATTGT-T--GTCA-AAGGACACACAGGAGATACAATCCAT-GACAGGTCCCCAATAAATTTCACA-TGGTTAGGATAT-TAAGTTCAAAGGTTTGGGTG--TGTGTAATCTGA-TGGTTATGCTGTTAATA-GGCGGTGTGCTCACT-TGTATCGATAACCCGG--TAG--ATATCCAACGATTAGCGCTAACTGGTCAC-AGAATAGCGATATAATG-CAGAAACTCTCTGCACGACAACTC----CCA-ATC
gi|6 : ttagcataagaatttctccatattcaagacatcgggctgatgccattgtagaattgtcatatgtTATTCAAATGAAAAA-TACA-CGAA-GACGGA-TATTTCCGA--ATGTATG-TAAA-TAGAAT-GTGCA--TA-GCAATGC---G-TATAACTT-GTGTCA-------ATTAAC----ATTTATGAATCG-TTACAGTATGGAT-CACATTCCCcatactgtggttaattaaaaagtgtaacgacagggatcagagagatgacaagctgaggcaatgtaggtggtcagtctattgtgtaacataagtttagtgaaggcattgggcaaagatctaattcgattttcgatagatggtttcccaatattggaaagcaaattaaggttatagaggcaagaagtcagtgaaatgaacggaatgggtgttttatttgta
gi|7 : acaaaacttataaggcgattttttcaacaagatttacgtctatgatttgttactgttatcgttcacatttgactgattatagtgatttatacaaccgcatctggtagttttcaattttctatcaattgaattttactgaaatgttttaA-CACTTAT--CTATATGG-AGACCTCTGATAC--ACCCCCAGGATTCGCCAGATT-ACAACTACTTAC-ACCGTCAAATAACC-------G-----AATTGTC--GT-GGGCTC---A---TTAT-TG--GA-GAGAAATAATG-TTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGA-AACCATGAATTTTTGAATGGA
gi|7 : AAATAATG--TT---GTATACA-TT-TC--A---AGTTC---A---TTAC-TCCGGATGAGAAACCAT----GAAT----TTTTGAATGGAATTAATC-CAGNCGGATGAGAAA-CCATGAAGTTTTGAATGGAAGTAA--TCCA--GCCCATGAAGGT-GAGAACATGC-ACGGT--CCGTGTCACAACTA-CACTCTTCTGTCattaatccagncggatgagaaaccatgaagttttgaatggaagtaatccagcccatgaaggtgagaacatgcacggtccgtgtcacaactacactcttctgtc
gi|8 : acacttatctatatggagacctctgatacacccccaggattcgccagattacaactacttacaccgtcaaataaccgaattgtcgtgggctcattattggagagGCGTAATAG-ATCATT--TATT--AGCAA-CCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---GCG-TTGA-T-CAATGTC-C--TTATAT----ACA---TTTCCATGTCATT-----GAAAGCACAGT-----GT-A-TGTTC-GT--GTCA-AAGAAAA----AGAGATACG--TCATTGATAGGTCA---ATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AATGGAGACGGATGGATTATTTTTATGTTTTACTCCCTTTGTAAACATGTACTTGCTATCCTGTCCCTATGTCACAGTATCTACGGTCAGTGATAATGTCTCTACCACCTCATGTATCATTCTCAAAGATGATGGGAAATACGTACATTTAAATAATCGAGTGTCTGGCAGATACTAGGAATCTCTGTCAACATGTAGTAGGGGACGGACCGGGGTGTTACAGTCTTATCAATTGCCACCTAGCAATATCACAAAATAACAAACAGCCTCGGAAGCTAGAATTGATGTCAAATTACAATCAGATGTCTGCACATATGATCGACAGAACAGTTTTTATATGCATAATAAAGATGCAG
Unaligned ( gi|9 ): TCAGTGAAATGAACGGAATGGGTGTTTTATCTTTATCTCCCTTTGTGATTGTGCACATGCTGTCTGTCCTATGTCACTACAGACTAGGTAACAGGTCACAATATCTACAGGCACTGACAGACCTACACACGCTACTGCTCTATGATGATGGGACATACGCACCTCTATTCTCCAGAGAACTGTCCTGGCAG
Unaligned ( gi|12 ): GGTCAGTCTATGTTAACTAAGTTTAGGAAGCCTTGGACAAGATTTATTGCTTTCTATAAAGATTTTACCTATATTGAAGAGTTAAAGTTGGAACAAGAAGTCAGTGATATGAACGGAATAGAGGTTTT
Unaligned ( gi|15 ): CCGAATGAAGATTGTATTTTATCTCCCTTTGTACATGACATGCTATCTGTCCTATG
Unaligned ( gi|16 ): GCATTTCTGGTAAACATTCAATTTTCATTCACGTATATAGAGTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1 5555555555555 22222222 2222222 11111 1 1 222 1 1 222 1 11 1 1 1 22222 1 222 22222 1 22222 1 1 1 1 1 222 2222 1 11 11 1 1 333333333 1 1 11 111 22 1 1 5555555555 222222 2222222 11 11 1 11 2222 2222222222222222222222222222222222222222222222222222222222222222222222222222 1 1 11 1 1 111 1 1 1 11 1 11 1 1 222222 11 1 11 222 11 1 222 1 11 1 11 1 11 1 222222 2222 11 11 11 1 11 11 22 2222 111 2222 111 1 1 11 22222 1 22222 1 11 3333333333 22222 3333333333333 11111 1 222222 11 222 11 11 44444 1 3333 111 33 11 11 11 111 2222 1 22 11 11 11 1 1 222 1 33333 2222
lowQualScore : 1 8 333 0 3 999 1 6 6 4444444444444 22222222 3 8888888 44444 1 77 1 6 0 3 5 111 1 5 5 1 111 1 5 88 1 5 5 5 22222 5 000 1 1 66666 5 55555 5 5 5 1 1 5 5 000 1 1 2222 22 5 77 66 5 5 1 999999999 5 1 2 3 88 222 00 7 3 1 6 3 7 3333333333 3 333333 1 6666666 66 11 0 00 3 2222 8 11 9 3 22 5555555555555555555555555555555555555555555555555555555555555555555555555555 2 0 9 333 5 88 1 5 1 5 1 999 1 5 1 5 1 1 5 22 88 1 5 88 1 1 1 1 5 5 999999 22 1 88 5 2 1 22 1 1 88 1 000 88 1 5 111 1 5 88 5 1 1 66 5 88 5 1 444444 1 3333 2 88 1 88 88 22 1 7 0 3 33 33 44 1111 777 1111 777 0 0 33 11111 0 00000 9 0 33 0 4444444444 55555 7777777777777 44444 0 333333 33 3 6 222 44 44 6 44444 2 5555 999 88 44 11 88 666 8888 3 00 7 88 88 88 3 3 3 6 0 7 3 7 333 3 7 33333 6 8888 7
lowQualScore : . . ... . . ... . . . ............. ........ . ....... ..... . .. . . . . . ... . . . . ... . . .. . . . . ..... . ... . . ..... . ..... . . . . . . . ... . . .... .. . .. .. . . . ......... . . . . .. ... .. . . . . . . .......... . ...... . ....... .. .. . .. . .... . .. . . .. ............................................................................ . . . ... . .. . . . . . ... . . . . . . . .. .. . . .. . . . . . . ...... .. . .. . . . .. . . .. . ... .. . . ... . . .. . . . .. . .. . . ...... . .... . .. . .. .. .. . . . . .. .. .. .... ... .... ... . . .. ..... . ..... . . .. . .......... ..... ............. ..... . ...... .. . . ... .. .. . ..... . .... ... .. .. .. .. ... .... . .. . .. .. .. . . . . . . . . ... . . ..... . .... .
lowQualScore : 4 0 888 8 3 555 0 7 7 2222222222222 22222222 2 3333333 88888 0 77 0 7 7 3 0 000 0 5 5 0 555 0 0 00 0 5 5 0 00000 5 555 0 0 55555 0 55555 0 0 0 0 0 0 5 555 0 0 0000 00 5 55 55 0 5 0 555555555 0 0 5 3 33 777 77 3 3 0 7 3 0 5555555555 2 555555 0 0000000 55 22 0 22 2 5555 8 55 8 2 00 0000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 2 000 5 00 0 0 0 5 0 000 0 0 0 0 0 0 0 00 00 0 5 55 0 0 0 0 5 5 555555 00 0 00 0 5 0 00 0 0 00 0 555 00 0 5 000 0 0 00 0 0 0 00 0 55 5 0 555555 0 5555 5 00 0 00 00 00 0 3 0 2 88 88 22 2222 000 8888 555 0 0 22 55555 0 55555 8 0 88 8 5555555555 00000 8888888888888 55555 0 000000 88 2 5 555 33 77 7 00000 0 3333 000 77 77 00 33 777 3333 3 00 3 33 33 33 3 7 7 7 7 3 3 3 333 3 3 33333 7 3333 3
consensus : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---GA-TTGTC--GT-GAGNTC---A---TTATTN-GAGAGAAACAATA-CTGTATACA-TTTCAAGTTCATTACTC-CGGATGAGATATCCACGAATCTTTGAATGGATCNAAC-TCCNCGNC----------CCGTGAAG-GTTGA---GAA-----------CNTGC-ACGGTG-------------TCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
Reference ( family-11545 ) : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---GA-TTGTC--GT-GAGNTC---A---TTATTC-GAGAGAAACAATA-CTGTATACA-TTTCAAGTTCATTACTC-CGGATGAGATATCCACGAATCTTTGAATGGATNNAAC-TCCNCGNC----------CCGTGAAG-GTTGA---GAA-----------CNTGC-ACGGTG-------------TCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
gi|1 : TATTCAAATGAAAAAATACAACGAAAGACGGA-TATTTCCGAAGCTGTATG-TAAAATAGAAT-GGACAGTTA-GCAATGC---G-TATAACTTTGTGTCA-------ATTAAC----ATTTTATGATCGCTTACAGTATGGATACACATTCCCCGCGCTATCTGAAATTCCTGTATAGATGCGGTGTTG-GTCAGTGAGC---TGGGACCCGACAGAAGTGACCTTCAGAAGAGAATCTAGTG-GA-CACAGCGG-ATATGATCAC--AGAATCTTC-CAGAGACTTAAAAAAAAAAGATCATTAAGAAA-TA----ATGCTGAG-TGG-TAGTTTAAGGGAGGATTCAAGGTTAAATCA-TCCGA-CATGGATTCCATGTCGTTGGTGTCTTTGACTGAGGA-AAGGCTGATAATGTCGAGATGTCT-CAGTCCGATGTTTT---------ATCATGCCCCTCCAACATGTCACTTATATCTATATGGATAGCCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACAGCCA-TCAC-ACGGACAAAT------TTCAGGA-TCG-CGAGT-AAGATC---AATTTCATACTGACAGAAACAACACCTGTATTCA-TTTCAAGTTCCTTACTTACGAATG-GAT-TCCTC-AATGCTCGAAAGG-TCAAACTTCCACACT----------CCGC-AAA-ATTGA---GA-------------TTACTACGGGT-------------TCCGTGTCATAACTT-CATGCTTGGATCTCAGGAATATGATATCGTA-TACGCTTTCCAATTCCCGTCATTGGCCATTCACCAGCCC-TCCCTGGGGT--CTGATACTGTTGAGTA-CGTACATAGGCCACT-GCGACGTAGTGTATTAC-AACAATG--TCACGAAAGATTTCATGTTTTTCCTATCGCAAGCCGACAGACA
gi|1 : ttattTTATCAAAA-GTATAGAGAAGAAAACAAGTTTACAAGAAAT-GGGCTTTGCATTTCTGTTAACATAGTCCCCTCTCAGAGAGATTTTCTAAATCCGC---CTCTGCTGATCCACTCT-TTGTTCAATGCA-ACAGGGAAG--TA-CCTCAAGTCAGAGATAGATATA-GAT-TTGCTTTCTATTATTGAAGTACCATAT---GTAACAGTTCTCAGAAGGTT--ATCAAATTTTCCTTTGTAACATGAA--GCCGTTTTAAACGCAATAG-ATC-GA--TAAT--CTCACACCTG----TC-----AT--G-TTA---GA-TTGTCA-TTAT---G-G-CTG----TAA-GTG-C--TCATATTGTCG-A---CTTCAGCGTCACT-----AAAAGCACAAT-----CTTA-GATTCTGT--GTCACACAAAGA----AGAGATACG--CCATTGA-AGGATAG--ATAAATTC-AC-AT-GTTAGG-----TTAGTTCTAA-GT---AGTG--CGTATA--CTG-ATGGTTTTAT--TT--TACG-CGTTAT----ACG-TGTA-CG-TA--CCGGTTTAG--ATATC-AGCAAGCGGCA-TAACCTGTC-C-AG-ATAGAG---TGAAG-CAGAGACTC-TC-----ACAACCCATTACTATATCATGatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggttatcaaaagtatagagaagaaaacaagtttacaagaaatgggctttgcatttctgttaacatagtcccctctcagagagattttctaaatccgcctctgctgatccactctttgttcaatgcaacagggaagtacctcaagtcagagatagatatagatttgctttctattattgaagtaccatatgtaacagttctcagaaggttatcaaattttcctttgtaacatgaagccgttttaaacgcaatagatcgataatctcacacctgtcatgttagattgtcattatggctgtaagtgctcatattgtcgacttcagcgtcactaaaagcacaatcttagattctgtgtcacacaaagaagagatacgccattgaaggatagataaattcacatgttaggttagttctaagtagtgcgtatactgatggttttattttacgcgttatacgtgtacgtaccggtttagatatcagcaagcggcataacctgtccagatagagtgaagcagagactctcacaacccattactatatcatg
gi|10 : ttatttattcaaatgaaaaaatacaacgaaagacggatatttccgaagctgtatgtaaaatagaatggacagttagcaatgcgtataactttgtgtcaattaacattttatgatcgcttacagtatggatacacattccccgcgctatctgaaattcctgtatagatgcggtgttggtcagtgagctgggacccgacagaagtgaccttcagaagagaatctagtggacacagcggatatgatcacagaatcttccagagacttaaaaaaaaaagatcattaagaaataatgctgagtggtagtttaagggaggattcaaggttaaatcatccgacatggattccatgtcgttggtgtctttgactgaggaaaggctgataatgtcgagatgtctcagtccgatgttttatcatgcccctccaacatgtcacttatatctatatggatagcctctgatactccccccgggattcgccagattacagccatcacacggacaaatttcaggatcgcgagtaagatcaatttcatactgacagaaacaacacctgtattcatttcaagttccttacttacgaatggattcctcaatgctcgaaaggtcaaacttccacactccgcaaaattgagattactacgggttccgtgtcataacttcatgcttggatctcaggaatatgatatcgtatacgctttccaattcccgtcattggccattcaccagccctccctggggtctgatactgttgagtacgtacataggccactgcgacgtagtgtattacaacaatgtcacgaaagatttcatgtttttcctatcgcaagccgacagacaatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggTGACC--TT----A-TTGTC------AGTTCCTCA---CTATTG-AAGAGAAACACTT-CTGAATATA-TTTCAAGTTCACTACTA-CGAATGAGATAT-CACCAATCATTGAATGGATCTAA----CCCGGC----------CTTTGAAG-G-TGA---GAA-----------CCTGC-ACG--G-------------TCCAT-TCACAACGTACAC-CTT
gi|11 : TTTAAAAGAAAAG-TA--GCCAAAGATGGGGTATTTCCAA--TTCTCTA-TAAA-TAGAAC-A-A-------GCAACGCTACG-TGTCACTTTAC-TCACTTCATGATTAGC----GTTAAAGAATCA-TTACTGGATGGAT-CACATTCCCacct
gi|13 : ttgttatcAAGAAAAG-TA--GCAAAAGACGGGATATTCCCGA--TTGTCTA-TCAA-TAGAA--A-AC------GCAAAGCT--A-TGTGAAATTGTGTCA-------TTTAATTTGTATTAAACAATCG-TTACAGGATGGAT-CACATTCCC
gi|14 : GACGGG-TATTTCCGA--TTGTCTA-TAAA-TAGACTCA-ACA---A---AACCC---GATG-AACATTGTGTCA-------ATAAGC----ATTAAATAATCG-GTATAAAATGGAT-CACATTCCCCGTG-TATCAGAA
gi|2 : TTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGTTC-ATAGCATCAGT--TATT--CTCAAA--TG----TC--ATAAT--ATTTG---TA-TT-TCA--GAT---A-GTTTGA-TACAATGTG-C--TGATAT----A-A---CTTCCATGTCACT-----AAAAGGGCA-------CCCAGTGTTCTATTGGTCA-AAGAA-A----AGAGATACA--CCCTTGACAGGTCAC--ATAAATCA-ACAATGGTTAGA---TCCTAGTTCAAAAGT----GTGGTTGTGTATCTTGAATGGGTTTATTATT--TA-G-CGTGGT----ACTCTGTA--GATA--CCGG--TAGGCATATC-AAACAGCCCCGCTAACTGTTCACAAGATTAGAG---TAAAGCCAGAGACTCTTC-----ACAA-CC----CCATATCATG
gi|3 : TGTTCAAAAGGAAAG-TACA-CGAAA-ACGGG-TATTTCCAA--CTAGATGATAAA-TAGA------CA--TTTGCAA-----------AACTGTGTGTAAT------ATTAAC----GTTAAAGAATT--CTACATGATGTAT--ACATTCCCCGTG-TGTCAGAAGTTC-TGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAAC-TTCAGAAG--GATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACTTAT--CTACATGGGATACCTCTGAAACCTCCCCACGGGATTCGCC-GATTCACACTTACTCACCACCGTCAAATAACCAATT------TTGTC--GTTGAAGTC---A---TTAGTT-GAGAGAAATAATA-CTGTTTACAATTTCAAGTTAATTACTC-CGGATGAGACA-CTATGAAGCTTTGGA-GAATGGAACGTAATCATC----------CCATGAAG-GTTGC---ATA-----------CATGC-ACG-TG-------------CCCGTGTCACAACTT-CACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACAtgtttagctgtagacagcagagatacagtgagggcagtaggtggtcgtcttatggttaactaagtttagagggcgttggcaagatctattgatttcgaatagatggtttacctatattgaagaattaggttggagcagaagtcaagttgaaatgaacggaatgggtgttttatcttatctccctttgtgtgattgtgcacaatgctgtctgtctttatcactaacagactaggtaaggtcacaatatctacaggcactgacgacctaaccacgctactgctactatgatgatgggagcatatcgccacctcaatatctccagagaactgggcctggagctactggggtcatgtcaaacattctgtggggatcgggggacttacacggggcgttacggtcttatgaagagtcacttagacatataccacattacaaaatacagctagccacggaagctagaattgatttggttcgtaaacaattacaagacaatgctcggatgacaaaataa
gi|4 : tta-ATCAGTGTTATTTGCTCAA--CTGGGGTTCCGATAATTAA-TTGGATTAATT-TCAATGATAAAG-G-TTGAAT-AAAAATGACAGTTAAAT----A-ATCACTTCCATGTCACTTACTAAAAAGCACAATGTCTACTCC-CATTGT-T--GTCA-AAGGACACACAGGAGATACAATCCAT-GACAGGTCCCCAATAAATTTCACA-TGGTTAGGATAT-TAAGTTCAAAGGTTTGGGTG--TGTGTAATCTGA-TGGTTATGCTGTTAATA-GGCGGTGTGCTCACT-TGTATCGATAACCCGG--TAG--ATATCCAACGATTAGCGCTAACTGGTCAC-AGAATAGCGATATAATG-CAGAAACTCTCTGCACGACAACTC----CCA-ATC
gi|6 : ttagcataagaatttctccatattcaagacatcgggctgatgccattgtagaattgtcatatgtTATTCAAATGAAAAA-TACA-CGAA-GACGGA-TATTTCCGA--ATGTATG-TAAA-TAGAAT-GTGCA--TA-GCAATGC---G-TATAACTT-GTGTCA-------ATTAAC----ATTTATGAATCG-TTACAGTATGGAT-CACATTCCCcatactgtggttaattaaaaagtgtaacgacagggatcagagagatgacaagctgaggcaatgtaggtggtcagtctattgtgtaacataagtttagtgaaggcattgggcaaagatctaattcgattttcgatagatggtttcccaatattggaaagcaaattaaggttatagaggcaagaagtcagtgaaatgaacggaatgggtgttttatttgta
gi|7 : acaaaacttataaggcgattttttcaacaagatttacgtctatgatttgttactgttatcgttcacatttgactgattatagtgatttatacaaccgcatctggtagttttcaattttctatcaattgaattttactgaaatgttttaA-CACTTAT--CTATATGG-AGACCTCTGATAC--ACCCCCAGGATTCGCCAGATT-ACAACTACTTAC-ACCGTCAAATAACC-------GAATTGTC--GT-GGGCTC---A---TTATTG-GAGAGAAATAATG-TTGTATACA-TTTCAAGTTCATTACTC-CGGATGAGA-AACCATGAATTTTTGAATGGAATTAA--TCCA-GNCGGATGAGAAACCATGAAGTTTTGAATGGAAGTAATCCAGCCCATG--AAGGTGAGAACATGCACGGTCCGTGTCACAACTA-CACTCTTCTGTC
gi|8 : GCGTAATAG-ATCATT--TATT--AGCAA-CCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---GCG-TTGA-T-CAATGTC-C--TTATAT----ACA---TTTCCATGTCATT-----GAAAGCACAGT-----GT-A-TGTTC-GT--GTCA-AAGAAAA----AGAGATACG--TCATTGATAGGTCA---ATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AATGGAGACGGATGGATTATTTTTATGTTTTACTCCCTTTGTAAACATGTACTTGCTATCCTGTCCCTATGTCACAGTATCTACGGTCAGTGATAATGTCTCTACCACCTCATGTATCATTCTCAAAGATGATGGGAAATACGTACATTTAAATAATCGAGTGTCTGGCAGATACTAGGAATCTCTGTCAACATGTAGTAGGGGACGGACCGGGGTGTTACAGTCTTATCAATTGCCACCTAGCAATATCACAAAATAACAAACAGCCTCGGAAGCTAGAATTGATGTCAAATTACAATCAGATGTCTGCACATATGATCGACAGAACAGTTTTTATATGCATAATAAAGATGCAG
Unaligned ( gi|9 ): TCAGTGAAATGAACGGAATGGGTGTTTTATCTTTATCTCCCTTTGTGATTGTGCACATGCTGTCTGTCCTATGTCACTACAGACTAGGTAACAGGTCACAATATCTACAGGCACTGACAGACCTACACACGCTACTGCTCTATGATGATGGGACATACGCACCTCTATTCTCCAGAGAACTGTCCTGGCAG
Unaligned ( gi|12 ): GGTCAGTCTATGTTAACTAAGTTTAGGAAGCCTTGGACAAGATTTATTGCTTTCTATAAAGATTTTACCTATATTGAAGAGTTAAAGTTGGAACAAGAAGTCAGTGATATGAACGGAATAGAGGTTTT
Unaligned ( gi|15 ): CCGAATGAAGATTGTATTTTATCTCCCTTTGTACATGACATGCTATCTGTCCTATG
Unaligned ( gi|16 ): GCATTTCTGGTAAACATTCAATTTTCATTCACGTATATAGAGTT
Alignments
lowQualScore : 222 1 5555555555555 22222222 2222222 11111 1 1 222 1 1 222 1 11 1 1 1 22222 1 222 22222 1 22222 1 1 1 1 1 222 2222 1 11 11 1 1 333333333 1 1 11 111 22 1 1 66666666666666666666666666 1111111 11111 11 1111 222 333333333 1 2222 1 1 11 1 1 111 1 1 1 11 1 11 1 1 222222 11 1 11 222 11 1 222 1 11 1 11 1 11 1 222222 2222 11 11 11 1 11 11 22 2222 111 2222 111 1 1 11 22222 1 22222 1 11 3333333333 22222 3333333333333 11111 1 222222 11 222 11 11 44444 1 3333 111 33 11 11 11 111 2222 1 22 11 11 11 1 1 222 1 33333 2222
lowQualScore : 1 8 333 0 3 999 1 6 6 4444444444444 22222222 3 8888888 44444 1 77 1 6 0 3 5 111 1 5 5 1 111 1 5 88 1 5 5 5 22222 5 000 1 1 66666 5 55555 5 5 5 1 1 5 5 000 1 1 2222 22 5 77 66 5 5 1 999999999 5 1 2 3 88 222 00 7 3 1 6 3 3 22222222222222222222222222 1 9999999 44444 8 77 1 6 8 8 8 7777 0 555 5 22 6 0 33 999999999 4 2 66 3 1 0 7777 2 0 9 333 5 88 1 5 1 5 1 999 1 5 1 5 1 1 5 22 88 1 5 88 1 1 1 1 5 5 999999 22 1 88 5 2 1 22 1 1 88 1 000 88 1 5 111 1 5 88 5 1 1 66 5 88 5 1 444444 1 3333 2 88 1 88 88 22 1 7 0 3 33 33 44 1111 777 1111 777 0 0 33 11111 0 00000 9 0 33 0 4444444444 55555 7777777777777 44444 0 333333 33 3 6 222 44 44 6 44444 2 5555 999 88 44 11 88 666 8888 3 00 7 88 88 88 3 3 3 6 0 7 3 7 333 3 7 33333 6 8888 7
lowQualScore : . . ... . . ... . . . ............. ........ . ....... ..... . .. . . . . . ... . . . . ... . . .. . . . . ..... . ... . . ..... . ..... . . . . . . . ... . . .... .. . .. .. . . . ......... . . . . .. ... .. . . . . . . .......................... . ....... ..... . .. . . . . . .... . ... . .. . . .. ......... . . .. . . . .... . . . ... . .. . . . . . ... . . . . . . . .. .. . . .. . . . . . . ...... .. . .. . . . .. . . .. . ... .. . . ... . . .. . . . .. . .. . . ...... . .... . .. . .. .. .. . . . . .. .. .. .... ... .... ... . . .. ..... . ..... . . .. . .......... ..... ............. ..... . ...... .. . . ... .. .. . ..... . .... ... .. .. .. .. ... .... . .. . .. .. .. . . . . . . . . ... . . ..... . .... .
lowQualScore : 4 0 888 8 3 555 0 7 7 2222222222222 22222222 2 3333333 88888 0 77 0 7 7 3 0 000 0 5 5 0 555 0 0 00 0 5 5 0 00000 5 555 0 0 55555 0 55555 0 0 0 0 0 0 5 555 0 0 0000 00 5 55 55 0 5 0 555555555 0 0 5 3 33 777 77 3 3 0 7 3 8 22222222222222222222222222 0 0000000 00000 0 00 4 0 0 0 0 0000 8 666 0 00 0 8 55 555555555 2 5 55 2 0 0 5555 5 0 2 000 5 00 0 0 0 5 0 000 0 0 0 0 0 0 0 00 00 0 5 55 0 0 0 0 5 5 555555 00 0 00 0 5 0 00 0 0 00 0 555 00 0 5 000 0 0 00 0 0 0 00 0 55 5 0 555555 0 5555 5 00 0 00 00 00 0 3 0 2 88 88 22 2222 000 8888 555 0 0 22 55555 0 55555 8 0 88 8 5555555555 00000 8888888888888 55555 0 000000 88 2 5 555 33 77 7 00000 0 3333 000 77 77 00 33 777 3333 3 00 3 33 33 33 3 7 7 7 7 3 3 3 333 3 3 33333 7 3333 3
consensus : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---G-----A-TTGTC--GT-GAGNTC---A---TTAT-TC--GA-GAGAAACAATA-CTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGATATCCACGAATCTTTGAATGGATNNAAC-TCCNCGNCCCGTGAAGGTTGAGAACNTGC-ACGGTGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
Reference ( family-11545 ) : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---G-----A-TTGTC--GT-GAGNTC---A---TTAT-TN--GA-GAGAAACAATA-CTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGATATCCACGAATCTTTGAATGGATCNAAC-TCCNCGNCCCGTGAAGGTTGAGAACNTGC-ACGGTGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
gi|1 : TATTCAAATGAAAAAATACAACGAAAGACGGA-TATTTCCGAAGCTGTATG-TAAAATAGAAT-GGACAGTTA-GCAATGC---G-TATAACTTTGTGTCA-------ATTAAC----ATTTTATGATCGCTTACAGTATGGATACACATTCCCCGCGCTATCTGAAATTCCTGTATAGATGCGGTGTTG-GTCAGTGAGC---TGGGACCCGACAGAAGTGACCTTCAGAAGAGAATCTAGTG-GA-CACAGCGG-ATATGATCAC--AGAATCTTC-CAGAGACTTAAAAAAAAAAGATCATTAAGAAA-TA----ATGCTGAG-TGG-TAGTTTAAGGGAGGATTCAAGGTTAAATCA-TCCGA-CATGGATTCCATGTCGTTGGTGTCTTTGACTGAGGA-AAGGCTGATAATGTCGAGATGTCT-CAGTCCGATGTTTT---------ATCATGCCCCTCCAACATGTCACTTATATCTATATGGATAGCCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACAGCCA-TCAC-ACGGACAAAT------TTCAGG-----A-TCG-CGAGT-AAGATC---AATTTCATACT--GA-CAGAAACAACACCTGTATTCA-TTTCAAGTTCC-TTACTTAC----GAATG-GAT-TCCTC-AATGCTCGAAAGG-TCAAACTTCCACACTCCGC-AAAATTGAGA--TTACTACGGGTTCCGTGTCATAACTT-CATGCTTGGATCTCAGGAATATGATATCGTA-TACGCTTTCCAATTCCCGTCATTGGCCATTCACCAGCCC-TCCCTGGGGT--CTGATACTGTTGAGTA-CGTACATAGGCCACT-GCGACGTAGTGTATTAC-AACAATG--TCACGAAAGATTTCATGTTTTTCCTATCGCAAGCCGACAGACA
gi|1 : ttattTTATCAAAA-GTATAGAGAAGAAAACAAGTTTACAAGAAAT-GGGCTTTGCATTTCTGTTAACATAGTCCCCTCTCAGAGAGATTTTCTAAATCCGC---CTCTGCTGATCCACTCT-TTGTTCAATGCA-ACAGGGAAG--TA-CCTCAAGTCAGAGATAGATATA-GAT-TTGCTTTCTATTATTGAAGTACCATAT---GTAACAGTTCTCAGAAGGTT--ATCAAATTTTCCTTTGTAACATGAA--GCCGTTTTAAACGCAATAG-ATC-GA--TAAT--CTCACACCTG----TC-----AT--G-TTA---GA-TTGTCA-TTAT---G-G-CTG----TAA-GTG-C--TCATATTGTCG-A---CTTCAGCGTCACT-----AAAAGCACAAT-----CTTA-GATTCTGT--GTCACACAAAGA----AGAGATACG--CCATTGA-AGGATAG--ATAAATTC-AC-AT-GTTAGG-----TTAGTTCTAA-GT---AGTG--CGTATA--CTG-ATGGTTTTAT--TT--TACG-CGTTAT----ACG-TGTA-CG-TA--CCGGTTTAG--ATATC-AGCAAGCGGCA-TAACCTGTC-C-AG-ATAGAG---TGAAG-CAGAGACTC-TC-----ACAACCCATTACTATATCATGatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggttatcaaaagtatagagaagaaaacaagtttacaagaaatgggctttgcatttctgttaacatagtcccctctcagagagattttctaaatccgcctctgctgatccactctttgttcaatgcaacagggaagtacctcaagtcagagatagatatagatttgctttctattattgaagtaccatatgtaacagttctcagaaggttatcaaattttcctttgtaacatgaagccgttttaaacgcaatagatcgataatctcacacctgtcatgttagattgtcattatggctgtaagtgctcatattgtcgacttcagcgtcactaaaagcacaatcttagattctgtgtcacacaaagaagagatacgccattgaaggatagataaattcacatgttaggttagttctaagtagtgcgtatactgatggttttattttacgcgttatacgtgtacgtaccggtttagatatcagcaagcggcataacctgtccagatagagtgaagcagagactctcacaacccattactatatcatg
gi|10 : ttatttattcaaatgaaaaaatacaacgaaagacggatatttccgaagctgtatgtaaaatagaatggacagttagcaatgcgtataactttgtgtcaattaacattttatgatcgcttacagtatggatacacattccccgcgctatctgaaattcctgtatagatgcggtgttggtcagtgagctgggacccgacagaagtgaccttcagaagagaatctagtggacacagcggatatgatcacagaatcttccagagacttaaaaaaaaaagatcattaagaaataatgctgagtggtagtttaagggaggattcaaggttaaatcatccgacatggattccatgtcgttggtgtctttgactgaggaaaggctgataatgtcgagatgtctcagtccgatgttttatcatgcccctccaacatgtcacttatatctatatggatagcctctgatactccccccgggattcgccagattacagccatcacacggacaaatttcaggatcgcgagtaagatcaatttcatactgacagaaacaacacctgtattcatttcaagttccttacttacgaatggattcctcaatgctcgaaaggtcaaacttccacactccgcaaaattgagattactacgggttccgtgtcataacttcatgcttggatctcaggaatatgatatcgtatacgctttccaattcccgtcattggccattcaccagccctccctggggtctgatactgttgagtacgtacataggccactgcgacgtagtgtattacaacaatgtcacgaaagatttcatgtttttcctatcgcaagccgacagacaatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggTGACC--TT---------A-TTGTC------AGTTCCTCA---CTAT-TG--AA-GAGAAACACTT-CTGAATATA-TTTCAAGTTCA-CTACTA-C----GAATGAGATAT-CACCAATCATTGAATGGATCTAA----CCCGGCCTTTGAAGG-TGAGAACCTGC-ACG--GTCCAT-TCACAACGTACAC-CTT
gi|11 : TTTAAAAGAAAAG-TA--GCCAAAGATGGGGTATTTCCAA--TTCTCTA-TAAA-TAGAAC-A-A-------GCAACGCTACG-TGTCACTTTAC-TCACTTCATGATTAGC----GTTAAAGAATCA-TTACTGGATGGAT-CACATTCCCacct
gi|13 : ttgttatcAAGAAAAG-TA--GCAAAAGACGGGATATTCCCGA--TTGTCTA-TCAA-TAGAA--A-AC------GCAAAGCT--A-TGTGAAATTGTGTCA-------TTTAATTTGTATTAAACAATCG-TTACAGGATGGAT-CACATTCCC
gi|14 : GACGGG-TATTTCCGA--TTGTCTA-TAAA-TAGACTCA-ACA---A---AACCC---GATG-AACATTGTGTCA-------ATAAGC----ATTAAATAATCG-GTATAAAATGGAT-CACATTCCCCGTG-TATCAGAA
gi|2 : TTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGTTC-ATAGCATCAGT--TATT--CTCAAA--TG----TC--ATAAT--ATTTG---TA-TT-TCA--GAT---A-GTTTGA-TACAATGTG-C--TGATAT----A-A---CTTCCATGTCACT-----AAAAGGGCA-------CCCAGTGTTCTATTGGTCA-AAGAA-A----AGAGATACA--CCCTTGACAGGTCAC--ATAAATCA-ACAATGGTTAGA---TCCTAGTTCAAAAGT----GTGGTTGTGTATCTTGAATGGGTTTATTATT--TA-G-CGTGGT----ACTCTGTA--GATA--CCGG--TAGGCATATC-AAACAGCCCCGCTAACTGTTCACAAGATTAGAG---TAAAGCCAGAGACTCTTC-----ACAA-CC----CCATATCATG
gi|3 : TGTTCAAAAGGAAAG-TACA-CGAAA-ACGGG-TATTTCCAA--CTAGATGATAAA-TAGA------CA--TTTGCAA-----------AACTGTGTGTAAT------ATTAAC----GTTAAAGAATT--CTACATGATGTAT--ACATTCCCCGTG-TGTCAGAAGTTC-TGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAAC-TTCAGAAG--GATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACTTAT--CTACATGGGATACCTCTGAAACCTCCCCACGGGATTCGCC-GATTCACACTTACTCACCACCGTCAAATAACCAATT-----------TTGTC--GTTGAAGTC---A---TTAG-TT--GA-GAGAAATAATA-CTGTTTACAATTTCAAGTTAA-TTACTC-C----GGATGAGACA-CTATGAAGCTTTGGA-GAATGGAACGTAATCATCCCATGAAGGTTGCATACATGC-ACG-TGCCCGTGTCACAACTT-CACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACAtgtttagctgtagacagcagagatacagtgagggcagtaggtggtcgtcttatggttaactaagtttagagggcgttggcaagatctattgatttcgaatagatggtttacctatattgaagaattaggttggagcagaagtcaagttgaaatgaacggaatgggtgttttatcttatctccctttgtgtgattgtgcacaatgctgtctgtctttatcactaacagactaggtaaggtcacaatatctacaggcactgacgacctaaccacgctactgctactatgatgatgggagcatatcgccacctcaatatctccagagaactgggcctggagctactggggtcatgtcaaacattctgtggggatcgggggacttacacggggcgttacggtcttatgaagagtcacttagacatataccacattacaaaatacagctagccacggaagctagaattgatttggttcgtaaacaattacaagacaatgctcggatgacaaaataa
gi|4 : tta-ATCAGTGTTATTTGCTCAA--CTGGGGTTCCGATAATTAA-TTGGATTAATT-TCAATGATAAAG-G-TTGAAT-AAAAATGACAGTTAAAT----A-ATCACTTCCATGTCACTTACTAAAAAGCACAATGTCTACTCC-CATTGT-T--GTCA-AAGGACACACAGGAGATACAATCCAT-GACAGGTCCCCAATAAATTTCACA-TGGTTAGGATAT-TAAGTTCAAAGGTTTGGGTG--TGTGTAATCTGA-TGGTTATGCTGTTAATA-GGCGGTGTGCTCACT-TGTATCGATAACCCGG--TAG--ATATCCAACGATTAGCGCTAACTGGTCAC-AGAATAGCGATATAATG-CAGAAACTCTCTGCACGACAACTC----CCA-ATC
gi|6 : ttagcataagaatttctccatattcaagacatcgggctgatgccattgtagaattgtcatatgtTATTCAAATGAAAAA-TACA-CGAA-GACGGA-TATTTCCGA--ATGTATG-TAAA-TAGAAT-GTGCA--TA-GCAATGC---G-TATAACTT-GTGTCA-------ATTAAC----ATTTATGAATCG-TTACAGTATGGAT-CACATTCCCcatactgtggttaattaaaaagtgtaacgacagggatcagagagatgacaagctgaggcaatgtaggtggtcagtctattgtgtaacataagtttagtgaaggcattgggcaaagatctaattcgattttcgatagatggtttcccaatattggaaagcaaattaaggttatagaggcaagaagtcagtgaaatgaacggaatgggtgttttatttgta
gi|7 : acaaaacttataaggcgattttttcaacaagatttacgtctatgatttgttactgttatcgttcacatttgactgattatagtgatttatacaaccgcatctggtagttttcaattttctatcaattgaattttactgaaatgttttaA-CACTTAT--CTATATGG-AGACCTCTGATAC--ACCCCCAGGATTCGCCAGATT-ACAACTACTTAC-ACCGTCAAATAACC-------G-----AATTGTC--GT-GGGCTC---A---TTAT-TG--GA-GAGAAATAATG-TTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGA-AACCATGAATTTTTGAATGGA
gi|7 : AAATAATG--TT---GTATACA-TT-TC--A---AGTTC---A---TTAC-TCCGGATGAGAAACCAT----GAAT----TTTTGAATGGAATTAATC-CAGNCGGATGAGAAA-CCATGAAGTTTTGAATGGAAGTAA--TCCA--GCCCATGAAGGT-GAGAACATGC-ACGGT--CCGTGTCACAACTA-CACTCTTCTGTCattaatccagncggatgagaaaccatgaagttttgaatggaagtaatccagcccatgaaggtgagaacatgcacggtccgtgtcacaactacactcttctgtc
gi|8 : acacttatctatatggagacctctgatacacccccaggattcgccagattacaactacttacaccgtcaaataaccgaattgtcgtgggctcattattggagagGCGTAATAG-ATCATT--TATT--AGCAA-CCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---GCG-TTGA-T-CAATGTC-C--TTATAT----ACA---TTTCCATGTCATT-----GAAAGCACAGT-----GT-A-TGTTC-GT--GTCA-AAGAAAA----AGAGATACG--TCATTGATAGGTCA---ATA
blockSeqs : A . CA G T C A . ATGTGCATA CGCTACG T CTTCATG TTGTA G A G . . . . A T . T ATT A . . T T T G ATTG A . T C . G TTTTT . G G T T C A . G T G TC T . T . A T TTTTTTTTT . A A . . GAT CT A C C C C G TTGTATACATTTCA T CTCA TCCG T T A A A A . AGNC TAT C TC T CT CGTAATCAT T G TT A C . TGC G A T ATT T . C . T T T GAG G . T C T C G CT . T A AT A C A A A . . TT A . G G T CA A T . C CCT . A A . T G GT C G T CC G . . G ACGGG G . C AC A . CT AT G A C A GT TG A GGGT CGA TAA GAT A . AT AAAG T ATAC T A AG AATCA TACTA ATGTCTACTCCC TATTG . CACACA AT T C CCA TC AA G ATAT A TTGG GTT TC AA TA AA GG GCTC C TC A AC . GC C C C C A A A ATA C T GCACG C . T
blockSeqs : A . CA A T C . . CTCAACAA AGCTA T T G C G G . . . . AG . . . A C . A AATTTTGTCGTTG G A TG . A T A . . . . CA G GC T GG CCCGG A G T A A . GT G . T . . A . . C . A AT . . . T GC . AATA A . . ACA . CCCAGT TT . AA . T C C A A G TC G . T AT A TG . G . . . A . . . . G A C A . A . . T . . . .
blockSeqs : A . G . T C . . CATTT CCCGA T . A T G A . A GAATTGTCGTG C A TT . G T A . . . . AA G TT T GT TCCAG A G T A A . GT . . . . A . . . . A G . . . . A . ATC T . . AA . GTGTAT GT . A . . T .
blockSeqs : T . G . C A . . ACAA TGCG . . G G G G . A TTATTGTC T A TG . . A . . . . . AA G GT .
blockSeqs : . A A . . AAAC . . . A G . T .
blockSeqCons : G** T** ACATN******** CTA***** G* ATTGTCGTTG**************** A****** TG*** N*
originalCons : NNNNNTATTCAAAAGAAAAG-TACAGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAAT-A-ACA--TA-GCAACGC---G-TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--TT---G-----A-TTGTC--GT-GAGNTC---A---TTAT-TC--GA-GAGAAACAATA-CTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGATATCCACGAATCTTTGAATGGATNNAAC-TCCNCGNCCCGTGAAGGTTGAGAACNTGC-ACGGTGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
finalCons : NNNNNTATTCAAAAGAAAAG-TAG--CGAAAGACGGG-TATTTCCGAT--TGTNTG-TAAA-TAGAACATN--------GCAACTA-----TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACCATTGTCGTTG----------------AGNTCA------TTATTG---GA-GAGAAACAATN-CTGTATACA-TTTCAAGTTCA-TTACTC-C----GGATGAGATATCCACGAATCTTTGAATGGATNNAAC-TCCNCGNCCCGTGAAGGTTGAGAACNTGC-ACGGTGTCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AATGGAGACGGATGGATTATTTTTATGTTTTACTCCCTTTGTAAACATGTACTTGCTATCCTGTCCCTATGTCACAGTATCTACGGTCAGTGATAATGTCTCTACCACCTCATGTATCATTCTCAAAGATGATGGGAAATACGTACATTTAAATAATCGAGTGTCTGGCAGATACTAGGAATCTCTGTCAACATGTAGTAGGGGACGGACCGGGGTGTTACAGTCTTATCAATTGCCACCTAGCAATATCACAAAATAACAAACAGCCTCGGAAGCTAGAATTGATGTCAAATTACAATCAGATGTCTGCACATATGATCGACAGAACAGTTTTTATATGCATAATAAAGATGCAG
Unaligned ( gi|9 ): TCAGTGAAATGAACGGAATGGGTGTTTTATCTTTATCTCCCTTTGTGATTGTGCACATGCTGTCTGTCCTATGTCACTACAGACTAGGTAACAGGTCACAATATCTACAGGCACTGACAGACCTACACACGCTACTGCTCTATGATGATGGGACATACGCACCTCTATTCTCCAGAGAACTGTCCTGGCAG
Unaligned ( gi|12 ): GGTCAGTCTATGTTAACTAAGTTTAGGAAGCCTTGGACAAGATTTATTGCTTTCTATAAAGATTTTACCTATATTGAAGAGTTAAAGTTGGAACAAGAAGTCAGTGATATGAACGGAATAGAGGTTTT
Unaligned ( gi|15 ): CCGAATGAAGATTGTATTTTATCTCCCTTTGTACATGACATGCTATCTGTCCTATG
Unaligned ( gi|16 ): GCATTTCTGGTAAACATTCAATTTTCATTCACGTATATAGAGTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 1 777777777777777777777777777 2222222 11111 1 1 222 1 1 222 1 11 1 1 1 22222 1 222 22222 1 22222 1 1 1 1 1 222 2222 1 11 11 1 1 333333333 1 1 11 111 22 1 1 333333 1 22222222 111 1 11 1 11 2222 2222222222222222222222222222222222222222222222222222222222222222222222222222 1 1 11 1 1 111 1 1 1 11 1 11 1 1 222222 11 1 11 222 11 1 222 1 11 1 11 1 11 1 222222 2222 11 11 11 1 11 11 22 2222 111 2222 111 1 1 11 22222 1 22222 1 11 3333333333 22222 3333333333333 11111 1 222222 11 222 11 11 44444 1 3333 111 33 11 11 11 111 2222 1 22 11 11 11 1 1 222 1 33333 2222
lowQualScore : 1 444 6 0 3 999 1 6 6 999999999999999999999999999 3 7 8888888 44444 1 77 1 6 0 3 5 111 1 5 5 1 111 1 5 88 1 5 5 5 22222 5 000 1 1 66666 5 55555 5 5 5 1 1 5 5 000 1 1 2222 22 5 77 66 5 5 1 999999999 5 1 2 3 88 222 00 7 3 1 6 3 7 666666 0 99999999 777 0 2 11 0 00 3 2222 8 11 9 3 22 5555555555555555555555555555555555555555555555555555555555555555555555555555 2 0 9 333 5 88 1 5 1 5 1 999 1 5 1 5 1 1 5 22 88 1 5 88 1 1 1 1 5 5 999999 22 1 88 5 2 1 22 1 1 88 1 000 88 1 5 111 1 5 88 5 1 1 66 5 88 5 1 444444 1 3333 2 88 1 88 88 22 1 7 0 3 33 33 44 1111 777 1111 777 0 0 33 11111 0 00000 9 0 33 0 4444444444 55555 7777777777777 44444 0 333333 33 3 6 222 44 44 6 44444 2 5555 999 88 44 11 88 666 8888 3 00 7 88 88 88 3 3 3 6 0 7 3 7 333 3 7 33333 6 8888 7
lowQualScore : . ... . . . ... . . . ........................... . . ....... ..... . .. . . . . . ... . . . . ... . . .. . . . . ..... . ... . . ..... . ..... . . . . . . . ... . . .... .. . .. .. . . . ......... . . . . .. ... .. . . . . . . ...... . ........ ... . . .. . .. . .... . .. . . .. ............................................................................ . . . ... . .. . . . . . ... . . . . . . . .. .. . . .. . . . . . . ...... .. . .. . . . .. . . .. . ... .. . . ... . . .. . . . .. . .. . . ...... . .... . .. . .. .. .. . . . . .. .. .. .... ... .... ... . . .. ..... . ..... . . .. . .......... ..... ............. ..... . ...... .. . . ... .. .. . ..... . .... ... .. .. .. .. ... .... . .. . .. .. .. . . . . . . . . ... . . ..... . .... .
lowQualScore : 4 000 0 8 3 555 0 7 7 222222222222222222222222222 2 8 3333333 88888 0 77 0 7 7 3 0 000 0 5 5 0 555 0 0 00 0 5 5 0 00000 5 555 0 0 55555 0 55555 0 0 0 0 0 0 5 555 0 0 0000 00 5 55 55 0 5 0 555555555 0 0 5 3 33 777 77 3 3 0 7 3 0 000000 0 22222222 555 0 5 00 0 22 2 5555 8 55 8 2 00 0000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 2 000 5 00 0 0 0 5 0 000 0 0 0 0 0 0 0 00 00 0 5 55 0 0 0 0 5 5 555555 00 0 00 0 5 0 00 0 0 00 0 555 00 0 5 000 0 0 00 0 0 0 00 0 55 5 0 555555 0 5555 5 00 0 00 00 00 0 3 0 2 88 88 22 2222 000 8888 555 0 0 22 55555 0 55555 8 0 88 8 5555555555 00000 8888888888888 55555 0 000000 88 2 5 555 33 77 7 00000 0 3333 000 77 77 00 33 777 3333 3 00 3 33 33 33 3 7 7 7 7 3 3 3 333 3 3 33333 7 3333 3
consensus : NNNNNTATTCAAAAGAAAAG---TACGCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAA----CA--TA-GCAA----CG-CG--TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--A---TTGTC-GT---TGAGNTCA---TTAT-TNGAGAGAAACAAT-NCTGTATACA-TTTCAAGTTCATTACTC-CGGATGAGATATCCACGAATCTTTGAATGGATCNAAC-TCCNCGNC----------CCGTGAAG-GTTGA---GAA-----------CNTGC-ACGGTG-------------TCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
Reference ( family-11545 ) : NNNNNTATTCAAAAGAAAAG---TA-GCGAAAGACGGG-TATTTCCGA--TTGTNTG-TAAA-TAGAA----CA--TN-GCAA----C--TA--TGTAACTTTGTGTCA-------ATTAAC----GTTAAANAATCG-TTACAGGATGGAT-CACATTCCCCGCG-TATCAGAAGTTCCTGTATAGATGCGGTGNTGTGTCAGTGANCATTTGGGACNCGACAGAAGTGACCTTCAGAAGAGGATCCNGTGTGATCACGGCGGGATATGATCACTGAGAACCTTCACAGGGACTTANANAGAGAAGATCGTTGAGAAAGTATTTTNTGCTGAGGTGGGTAGTTCNAGGGGGGATTCAGGNTTAAATCACTCCGAACGTGGATTCCATGTCGNTNGTGTCTNTGACTGANNATAAGGCTGATANTGTCGAGATGTCTACAGTCCGNTGTTTTTTTTTTTTTACCATGCCNCCCCGACATA-CACTTAT--CTATATGGGANACCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACANCTACTCAC-ACCGTCAAATAACC--A---TTGTC-GT---TGAGNTCA---TTAT-TGGAGAGAAACAAT-NCTGTATACA-TTTCAAGTTCATTACTC-CGGATGAGATATCCACGAATCTTTGAATGGATNNAAC-TCCNCGNC----------CCGTGAAG-GTTGA---GAA-----------CNTGC-ACGGTG-------------TCCGTGTCACAACTT-CACTCTTCTGTCTNNNGAACATGACGTCGCGTTGCGCTTTCCAATTCCCGTCACTGNCCGTTCACCNGCCCTTCCCTGGGNTGANTGANACTGTTNAGCACCGCGCNTGGNCCACTGGCNNCGTAGTNTACTGCAAACAATGATTNACGAAGGGTTTCATNTNTTTCCTATCGCAAGCNGACAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAGTATAGAGAAGAAAACANNTTNACAAGAAATGGGGCCGTGCNTTCCTGTTANNATAGCCCNCTCTCGGANAGATTTTCTGANCCCGCCCTCTCCGCTGATCCACTNTATTGTTCAATNCAGACAGGGAAGGTTACCCTCAAGNCAGAGATANATATNCGATGTTGCTTTCTATTATTGAAGTACNATACGGGGTGANAGTTCTCAGACGGTTACATCAGATTTCCNTTCGTAACATGGACTGCNNTNTTAAGCGCAATAG-ATCAGT--TATT--CTCAAACCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---G-G-TTGA-T-CAATGTG-C--TTATAT----A-A---CTTCCATGTCACT-----AAAAGCACAAT-----CTCA-CGTTCTGT--GTCA-AAGAANA----AGAGATACG--CCATTGACAGGTCAC--ATAAATTN-ACAATGGTTAGG---T-TTAGTTCAAAGGT---GGTG--CGTGTA-CCTGAATGGTTTTATTGTT--TA-G-CGTTGT----ACT-TGTA-CGATA--CCGG--TAG--ATATC-AACGAGCGGCGCTAACCGGTCAC-AGAATAGAG---TAAAG-CAGAGACTCTTC-----ACAACCC----CCATATCATG
gi|1 : TATTCAAATGAAAAAATACA-ACGAAAGACGGA-TATTTCCGAAGCTGTATG-TAAAATAGAATGGACAGTTA-GCAA----TG-CG--TATAACTTTGTGTCA-------ATTAAC----ATTTTATGATCGCTTACAGTATGGATACACATTCCCCGCGCTATCTGAAATTCCTGTATAGATGCGGTGTTG-GTCAGTGAGC---TGGGACCCGACAGAAGTGACCTTCAGAAGAGAATCTAGTG-GA-CACAGCGG-ATATGATCAC--AGAATCTTC-CAGAGACTTAAAAAAAAAAGATCATTAAGAAA-TA----ATGCTGAG-TGG-TAGTTTAAGGGAGGATTCAAGGTTAAATCA-TCCGA-CATGGATTCCATGTCGTTGGTGTCTTTGACTGAGGA-AAGGCTGATAATGTCGAGATGTCT-CAGTCCGATGTTTT---------ATCATGCCCCTCCAACATGTCACTTATATCTATATGGATAGCCTCTGATAC-TCCCCCCGGGATTCGCCAGATT-ACAGCCA-TCAC-ACGGACAAAT-TTC--A---GGATC-GCGAGTAAGATCAATTTCATACTGACAGAAACAACACCTGTATTCA-TTTCAAGTTCCTTACTTACGAATG-GAT-TCCTC-AATGCTCGAAAGG-TCAAACTTCCACACT----------CCGC-AAA-ATTGA---GA-------------TTACTACGGGT-------------TCCGTGTCATAACTT-CATGCTTGGATCTCAGGAATATGATATCGTA-TACGCTTTCCAATTCCCGTCATTGGCCATTCACCAGCCC-TCCCTGGGGT--CTGATACTGTTGAGTA-CGTACATAGGCCACT-GCGACGTAGTGTATTAC-AACAATG--TCACGAAAGATTTCATGTTTTTCCTATCGCAAGCCGACAGACA
gi|1 : ttattTTATCAAAA-GTATAGAGAAGAAAACAAGTTTACAAGAAATGGG-CTTTGCATTTCTGTTAACATAGTCCCCTCTCAGAGAGATTTTCTAAATCCGC---CTCTGCTGATCCACTCT-TTGTTCAATGCA-ACAGGGAAG--TA-CCTCAAGTCAGAGATAGATATA-GAT-TTGCTTTCTATTATTGAAGTACCATAT---GTAACAGTTCTCAGAAGGTT--ATCAAATTTTCCTTTGTAACATGAA--GCCGTTTTAAACGCAATAG-ATC-GA--TAAT--CTCACACCTG----TC-----AT--G-TTA---GA-TTGTCA-TTAT---G-G-CTG----TAA-GTG-C--TCATATTGTCG-A---CTTCAGCGTCACT-----AAAAGCACAAT-----CTTA-GATTCTGT--GTCACACAAAGA----AGAGATACG--CCATTGA-AGGATAG--ATAAATTC-AC-AT-GTTAGG-----TTAGTTCTAA-GT---AGTG--CGTATA--CTG-ATGGTTTTAT--TT--TACG-CGTTAT----ACG-TGTA-CG-TA--CCGGTTTAG--ATATC-AGCAAGCGGCA-TAACCTGTC-C-AG-ATAGAG---TGAAG-CAGAGACTC-TC-----ACAACCCATTACTATATCATGatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggttatcaaaagtatagagaagaaaacaagtttacaagaaatgggctttgcatttctgttaacatagtcccctctcagagagattttctaaatccgcctctgctgatccactctttgttcaatgcaacagggaagtacctcaagtcagagatagatatagatttgctttctattattgaagtaccatatgtaacagttctcagaaggttatcaaattttcctttgtaacatgaagccgttttaaacgcaatagatcgataatctcacacctgtcatgttagattgtcattatggctgtaagtgctcatattgtcgacttcagcgtcactaaaagcacaatcttagattctgtgtcacacaaagaagagatacgccattgaaggatagataaattcacatgttaggttagttctaagtagtgcgtatactgatggttttattttacgcgttatacgtgtacgtaccggtttagatatcagcaagcggcataacctgtccagatagagtgaagcagagactctcacaacccattactatatcatg
gi|10 : ttatttattcaaatgaaaaaatacaacgaaagacggatatttccgaagctgtatgtaaaatagaatggacagttagcaatgcgtataactttgtgtcaattaacattttatgatcgcttacagtatggatacacattccccgcgctatctgaaattcctgtatagatgcggtgttggtcagtgagctgggacccgacagaagtgaccttcagaagagaatctagtggacacagcggatatgatcacagaatcttccagagacttaaaaaaaaaagatcattaagaaataatgctgagtggtagtttaagggaggattcaaggttaaatcatccgacatggattccatgtcgttggtgtctttgactgaggaaaggctgataatgtcgagatgtctcagtccgatgttttatcatgcccctccaacatgtcacttatatctatatggatagcctctgatactccccccgggattcgccagattacagccatcacacggacaaatttcaggatcgcgagtaagatcaatttcatactgacagaaacaacacctgtattcatttcaagttccttacttacgaatggattcctcaatgctcgaaaggtcaaacttccacactccgcaaaattgagattactacgggttccgtgtcataacttcatgcttggatctcaggaatatgatatcgtatacgctttccaattcccgtcattggccattcaccagccctccctggggtctgatactgttgagtacgtacataggccactgcgacgtagtgtattacaacaatgtcacgaaagatttcatgtttttcctatcgcaagccgacagacaatagacaaaactcagacttggaggtggagaatttaattattcacaagcggaagcaaaagctagttacgcatatgaaccattcgtaccagtttctcttgacggatgcatgaaaataattttagaaggaaattatactgacgaatgctgctgtctgtatttctgaaaatatattatcttataagaattcgaagaaagtataacaagtccttggattaccatcaaacactgctcaacaacgtatggtttgtttcaaatctttgcgatgcaagtgtgtacttataccgagttaccttaccccaaatttctttattccggagagaacatacatttcgcaggataaagttatcgggggcaaacaaaagatgtctctggTGACCTTA---TTGTCAGT---TC--CTCA---CTAT-TGAAGAGAAACACT-TCTGAATATA-TTTCAAGTTCACTACTA-CGAATGAGATAT-CACCAATCATTGAATGGATCTAA----CCCGGC----------CTTTGAAG-G-TGA---GAA-----------CCTGC-ACG--G-------------TCCAT-TCACAACGTACAC-CTT
gi|11 : TTTAAAAGAAAAG---TA-GCCAAAGATGGGGTATTTCCAA--TTCTCTA-TAAA-TAGAA----CA---A-GCAA----CGCTACGTGTCACTTTAC-TCACTTCATGATTAGC----GTTAAAGAATCA-TTACTGGATGGAT-CACATTCCCacct
gi|13 : ttgttatcAAGAAAAG---TA-GCAAAAGACGGGATATTCCCGA--TTGTCTA-TCAA-TAGAA----AA---C-GCAAAG--C--TA--TGTGAAATTGTGTCA-------TTTAATTTGTATTAAACAATCG-TTACAGGATGGAT-CACATTCCC
gi|14 : GACGGG-TATTTCCGA--TTGTCTA-TAAA-TAGA-----CT--CA-ACAAAACCC--GA--TG-AACATTGTGTCA-------ATAAGC----ATTAAATAATCG-GTATAAAATGGAT-CACATTCCCCGTG-TATCAGAA
gi|2 : TTATCAAAAAGT-TAGA------AACATTTTAACAA--AATGGGGCCGTGCTTTCCTGTTACAATAGCCCACTCTCGAATAAATTTT--GACCCCGCCCTCTCCGTT--TCCATTATATTAT---ATTCAGACAGGGAAAGTTACCCTCAAAGCAGAAATATATATCCGATGTTGCTTTTT--TATTGAAA-ACGA-ACGGGGTGAGAAT----AGACAATTACATCAGATTTCCATTC--AACATGGACTGCATTGTTAAGTTC-ATAGCATCAGT--TATT--CTCAAA--TG----TC--ATAAT--ATTTG---TA-TT-TCA--GAT---A-GTTTGA-TACAATGTG-C--TGATAT----A-A---CTTCCATGTCACT-----AAAAGGGCA-------CCCAGTGTTCTATTGGTCA-AAGAA-A----AGAGATACA--CCCTTGACAGGTCAC--ATAAATCA-ACAATGGTTAGA---TCCTAGTTCAAAAGT----GTGGTTGTGTATCTTGAATGGGTTTATTATT--TA-G-CGTGGT----ACTCTGTA--GATA--CCGG--TAGGCATATC-AAACAGCCCCGCTAACTGTTCACAAGATTAGAG---TAAAGCCAGAGACTCTTC-----ACAA-CC----CCATATCATG
gi|3 : TGTTCAAAAGGAAAG---TACACGAAA-ACGGG-TATTTCCAA--CTAGATGATAAA-TAGA-----CA--TTTGCAA--------------AACTGTGTGTAAT------ATTAAC----GTTAAAGAATT--CTACATGATGTAT--ACATTCCCCGTG-TGTCAGAAGTTC-TGTAT---TGTGGTGATGTGTC-GTAATCATTTAGGACACGACAGAAGTAAC-TTCAGAAG--GATCCTGTATGATTACGGCGGGATATGAT-ATTGAAAACCTTCACAGG---TTATACAGAGA-----GTTGAGAAAGTATTTTTTG-TGAGGTGGGTAGTTCTAGGAGGGATTCAGGTTTAAATCACTCTGAACGTGGATT---TATTGGTTGTG---GTGACTGATCATAAG--TGAT-TTGT-GAGATGTCTACAGTCCATTGTTTTTTTTTTTTTACCAT-CCACCCAGACATA-CACTTAT--CTACATGGGATACCTCTGAAACCTCCCCACGGGATTCGCC-GATTCACACTTACTCACCACCGTCAAATAACC--AATTTTGTC-GT---TGAAGTCA---TTAG-TTGAGAGAAATAAT-ACTGTTTACAATTTCAAGTTAATTACTC-CGGATGAGACA-CTATGAAGCTTTGGA-GAATGGAACGTAATCATC----------CCATGAAG-GTTGC---ATA-----------CATGC-ACG-TG-------------CCCGTGTCACAACTT-CACTCTTCTGTCTATTGAACATGACGTCGCGTTGTGTTTTC--ATTCCCGTCACTGCCCGTT-ACCTGCCCTTCCCTGGGTTGAGTGAGA-TGTTTAACACCGCGCTTGGCCCACTGGCCTCGT--TTTACTGCAAACAATAATTAATGAAGGGTTTCATCTATTTCCTATTGCAAATAGACAGACAtgtttagctgtagacagcagagatacagtgagggcagtaggtggtcgtcttatggttaactaagtttagagggcgttggcaagatctattgatttcgaatagatggtttacctatattgaagaattaggttggagcagaagtcaagttgaaatgaacggaatgggtgttttatcttatctccctttgtgtgattgtgcacaatgctgtctgtctttatcactaacagactaggtaaggtcacaatatctacaggcactgacgacctaaccacgctactgctactatgatgatgggagcatatcgccacctcaatatctccagagaactgggcctggagctactggggtcatgtcaaacattctgtggggatcgggggacttacacggggcgttacggtcttatgaagagtcacttagacatataccacattacaaaatacagctagccacggaagctagaattgatttggttcgtaaacaattacaagacaatgctcggatgacaaaataa
gi|4 : tta-ATCAGTGTTATTTGCTCAA--CTGGGGTTCCGATAATTAA-TTGGATTAATT-TCAATGATAAAG-G-TTGAAT-AAAAATGACAGTTAAAT----A-ATCACTTCCATGTCACTTACTAAAAAGCACAATGTCTACTCC-CATTGT-T--GTCA-AAGGACACACAGGAGATACAATCCAT-GACAGGTCCCCAATAAATTTCACA-TGGTTAGGATAT-TAAGTTCAAAGGTTTGGGTG--TGTGTAATCTGA-TGGTTATGCTGTTAATA-GGCGGTGTGCTCACT-TGTATCGATAACCCGG--TAG--ATATCCAACGATTAGCGCTAACTGGTCAC-AGAATAGCGATATAATG-CAGAAACTCTCTGCACGACAACTC----CCA-ATC
gi|6 : ttagcataagaatttctccatattcaagacatcgggctgatgccattgtagaattgtcatatgtTATTCAAATGAAAAA---TACACGAA-GACGGA-TATTTCCGA--ATGTATG-TAAA-TAGAATGTGCA--TA-GCAA----TG-CG--TATAAC-TTGTGTCA-------ATTAAC----ATTTATGAATCG-TTACAGTATGGAT-CACATTCCCcatactgtggttaattaaaaagtgtaacgacagggatcagagagatgacaagctgaggcaatgtaggtggtcagtctattgtgtaacataagtttagtgaaggcattgggcaaagatctaattcgattttcgatagatggtttcccaatattggaaagcaaattaaggttatagaggcaagaagtcagtgaaatgaacggaatgggtgttttatttgta
gi|7 : acaaaacttataaggcgattttttcaacaagatttacgtctatgatttgttactgttatcgttcacatttgactgattatagtgatttatacaaccgcatctggtagttttcaattttctatcaattgaattttactgaaatgttttaA-CACTTAT--CTATATGG-AGACCTCTGATAC--ACCCCCAGGATTCGCCAGATT-ACAACTACTTAC-ACCGTCAAATAACCGAA---TTGTC-GT----GGGCTCA---TTAT-TGGAGAGAAATAAT-GTTGTATACA-TTTCAAGTTCATTACTC-CGGATGAGA-AACCATGAATTTTTGAATGGAATTAA--TCCA-GNCGGATGAGAAACCATGAAGTTTTGAATGGAAGTAATCCAGCCCATG--AAGGTGAGAACATGCACGGTCCGTGTCACAACTA-CACTCTTCTGTC
gi|8 : GCGTAATAG-ATCATT--TATT--AGCAA-CCTG----TC--ATAAT--G-TTG---TA-TT-TCA-TGAT---GCG-TTGA-T-CAATGTC-C--TTATAT----ACA---TTTCCATGTCATT-----GAAAGCACAGT-----GT-A-TGTTC-GT--GTCA-AAGAAAA----AGAGATACG--TCATTGATAGGTCA---ATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AATGGAGACGGATGGATTATTTTTATGTTTTACTCCCTTTGTAAACATGTACTTGCTATCCTGTCCCTATGTCACAGTATCTACGGTCAGTGATAATGTCTCTACCACCTCATGTATCATTCTCAAAGATGATGGGAAATACGTACATTTAAATAATCGAGTGTCTGGCAGATACTAGGAATCTCTGTCAACATGTAGTAGGGGACGGACCGGGGTGTTACAGTCTTATCAATTGCCACCTAGCAATATCACAAAATAACAAACAGCCTCGGAAGCTAGAATTGATGTCAAATTACAATCAGATGTCTGCACATATGATCGACAGAACAGTTTTTATATGCATAATAAAGATGCAG
Unaligned ( gi|9 ): TCAGTGAAATGAACGGAATGGGTGTTTTATCTTTATCTCCCTTTGTGATTGTGCACATGCTGTCTGTCCTATGTCACTACAGACTAGGTAACAGGTCACAATATCTACAGGCACTGACAGACCTACACACGCTACTGCTCTATGATGATGGGACATACGCACCTCTATTCTCCAGAGAACTGTCCTGGCAG
Unaligned ( gi|12 ): GGTCAGTCTATGTTAACTAAGTTTAGGAAGCCTTGGACAAGATTTATTGCTTTCTATAAAGATTTTACCTATATTGAAGAGTTAAAGTTGGAACAAGAAGTCAGTGATATGAACGGAATAGAGGTTTT
Unaligned ( gi|15 ): CCGAATGAAGATTGTATTTTATCTCCCTTTGTACATGACATGCTATCTGTCCTATG
Unaligned ( gi|16 ): GCATTTCTGGTAAACATTCAATTTTCATTCACGTATATAGAGTT