lowQualScore : 1111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 444444444 11 111111 222 0000000000000 33 2222222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111 555555555 111 4444444444444444 22 2222222222 111 11 1 1 111 1111 2 2 44444444444444444 2 11 2222222 222222222222222 222222 111111111 111 77777777777777777777777 555555555555 4444444444444444444444 2 2222222222 1111 2222 111111 22222222 33333333333333333333 22222222222222222222222
lowQualScore : 6 111111111 6 5 00 999999 6 99 444 6 3 5555555555555 55 99 5 99 3 9 1111111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7777 000000000 99 99 6 3 5 44 5 777 3 5 000 5 9999999999999999 6 55 1 8888888888 3 1 6 1 5 777 2 3 0 6 3 7 8 0 1 8 3 44 6 0 3 1 3 11 8 5 8 3 2 999 9 5 6 666 0 8 8888 1 6 8 6 9 8 0 99999999999999999 1 7 3 0 8 1 0 8 11 6666666 3 6 666666666666666 6 99 6 222222 555555555 0 2 555 6 3 8 00000000000000000000000 6 6 999999999999 3 5 9999999999999999999999 5 5 1111111111 66 00 2222 99 6 1 5 66 66 8888 4 222222 0 4 4 66 1 66 5 00000000 5 4 33 33 33 5 33 6666 555 88888888888888888888 2 0 33 55555555555555555555555 66666666 55 888 6
lowQualScore : . ......... . . .. ...... . .. ... . . ............. .. .. . .. . . ....... ................................................................................................... .... ......... .. .. . . . .. . ... . . ... . ................ . .. . .......... . . . . . ... . . . . . . . . . . . .. . . . . . .. . . . . . ... . . . ... . . .... . . . . . . . ................. . . . . . . . . .. ....... . . ............... . .. . ...... ......... . . ... . . . ....................... . . ............ . . ...................... . . .......... .. .. .... .. . . . .. .. .... . ...... . . . .. . .. . ........ . . .. .. .. . .. .... ... .................... . . .. ....................... ........ .. ... .
lowQualScore : 0 888888888 7 3 22 222222 0 22 333 0 5 2222222222222 00 22 7 22 2 3 7777777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0000 000000000 22 22 7 5 7 22 0 333 2 7 000 3 3333333333333333 0 00 7 3333333333 9 7 6 0 7 222 5 3 3 7 5 3 0 8 4 2 8 00 0 8 2 7 5 66 0 0 0 0 8 222 6 0 0 666 8 6 0000 0 7 0 2 0 0 0 22222222222222222 2 0 2 0 0 4 8 0 00 0000000 2 7 333333333333333 7 22 7 333333 555555555 5 7 666 7 5 0 00000000000000000000000 7 0 333333333333 2 3 4444444444444444444444 0 2 9999999999 99 22 1111 22 7 7 0 99 99 9999 4 888888 1 4 4 11 4 99 0 55555555 0 4 88 77 99 7 99 1111 000 44444444444444444444 9 7 99 55555555555555555555555 77777777 00 888 7
consensus : NNAAAAATGCTTTCCAAAATATGCCCAT------A--GTAGC-TTTCAGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA-C-ATAAGAAACACAATAAT---CT---TAT-TTTTTAA--AAA-GAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTT-------TATG--------------------------TC----------A----------------A--------------------------G----------------GATTGTAACGGCAACAAA----TATCAT------AT--TAA--AAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAG-TGT---TCTGCA---------------AAAAAA-TGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGGCACGTGTTAAAT-TTGTCACTTATTA-GAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCACGG-ACTCTCACAATATAAGTGATTATTCTATA-ATAGGGA-TGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCGCCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGTAGACA-AGAA-ATAGAAAATTGTTGTACGAACT-ATTTTTATA-TTGTA--TAATTATGTATGTA-------CATGTACAATTAATT-ACT--AAT-TGTA-TATTTCATGTTTGTAA-TTCGCATAGGT--CAGT-A----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACGCTTATT-ATC-TTGA-GATATGCCGACGCGGCTAACG--TA-GC---TAT--------TGTT-AAT-TCATAGAC----------TC--TTACTATTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTACTGTT-CAACTTA--AT--ATCCC-ACTG-TGACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCG----A---A----ATATTT--C-------AAGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
Reference ( gi|3 ) : TAAAAAATACTTTCCAAAATATGCCCAT------C--GTAGC-TTTTAGAAGAGATAAGAATTTA-AA------AGACGTCT--TGGTA-A-ATAAGAGACACAATAATACACCATGTATATTTTTAATTAAA-GAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTT-------TATG--------------------------TC----------A----------------A--------------------------G----------------GATTGTAACGGCAACAAA----TAT---------AT--TAA--AAAT-TACATTAATTGTAAATCCAGTAACATAATT-TATGGAG-TGT---TCTGC----------------AAGAA--TGCAATAAAATCGTA--TG------TGTGGGAAAAACTGGTGTT-ACT-TGATATCAGAGGCATGCGTTAAAT-TTGTCATTTATTA-GAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCACGA-ACTTTCACAATATAAGTGATTATTCTATA-ATAGGGA-TGAAAGAGCTT-TACAAAGATGGCATGTATCATCGATTTAGGGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCAT-TCGGAATAAACAAACGGG-AACATTATTGTCTTTAAAA-ATG-CGTCTTAACATGTAAACAGAGAATATAGAAAATTGTTGTAC-AACT-ATTTTTATA-TTGTA--TAATTATGTATGTA-------CATGTACAATTAATT-ACG--AAT-TATA-TATTTCATGTTTGTAA-TTCACATAGGT--CAGT-A----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACACTTATTCATCCTTAAGGATATGCTGACGCGGCTAACT--TA-GC---TCA--------TGTT-AATATCATAGAC----------TC--TTACTATTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACTTA--AT--AT-C--ACTG-TGACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCG----A---A----TTA--T--C-------AAGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTAT
gi|1 : AAAAATGCTTTCCAAAATATGCCCAT------A--GTAGC-TTTCAGAAGAGATAAGAATTCA-AA------AGACATCT--TGGTA-C-ATAAGAAACACAATAAT-------GTATATTTAAAA--AAA-GAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAA-GTGCATTT-------TATG--------------------------TCAATATGTCATA----------------A--------------------------GAACTAACCAATTCGATGATTGTAACGGCAACAAA----TATCATAATATTAT--TAG--AAAT-TACATCAATTGTAAAATCAGTAATGTAGTTGTATGG-G-TGT---TCTGC----------------AAAAAA-TGCAAGTCAAT-GTA--TA------TGTGGGAGAA-CTGTTGCT-ACTATTATATCAGAGGCATGTGTTTTATGTTGTCATT-ATTAAGAAGGAAGACTGA--GCCCGGTAGCTATTCATTTTTGCACGGGACTCTCACAATATA-GTGATTATTCT-TATATAGGGAATGGAAAAGCTGATACAAAGATGACATTTATCGTCGATTTAGAGAAAACCCATGGAAGAAGAAA-T-TGATCACTTACGCAC-AT-TCGGAATAAACAAACGGG-AACATTTGTGTCTTTTAAA-ATG-CGTCTTAA------------------AGAAAATTGTTGTAT-AACT-ATTTTTATA-TTGCA--TAATTATTTATGTA-------CATGTACAATTAATT-ACT--AATGTA-A-TA-TTCATGGTT
gi|2 : gttttaatccagttcacaatttgacactaaacgctcctggtctgataatatgggatggttgcatgagtgtaactaaatctcatatttgacaaaactctgataaagctatccaagtcatttatacatgatgacgcgatattattgtatgtatcgatttttggcatctggatccgagaacatgatcagtaagaacttaaacaattcataaacgcgaatgaaatacatccgaatattcagcttgacttgcgacaatctaatgcaaaaaacggatttccttgatgtaacgatctcaatagcaaatggattcctttctacagacttgtatcgcaaacctaccgatagacatacgtaccttaataaaacttctaatcaccccgaatccacaaaaaagctattccctttggacttggtctacgtgcgtgtagaatatgtacaacaaaagaaaaatatcagattcaacgaaagaaaatgaaaaataacaaaataaaacgcggttattcatataatgatttagaaaaagaactcatcaaagtagataaactcgacagttctaatctcctaaactacagaaaaaagacgaagcagtataatcgtgttccccttgtagtaaactactccagaggacttcccaatattcataacatttataaaaaatcgacaaaaaattcttgagatttctgaccgcctcAAAAATGCTTTCCAAAATATGCCCAT------ATAGTAGC-TTTCAGAAGAGATAAGAATTTA-AATATAAAAGACATCT--TGGTACATATAAGAAACACAATAAT---CTATTT---TTTTTAA--AAA-GAAAAC-TTGTGCGAGCCATGTATAGTGCTGAAAAGTGCATTT-------TATG--------------------------TC----------A----------------ATATGTCATAAAAACTAACCAATTCGAG----------------GATTGTAACAGCAACAAA----TATCAT------AT--TAA--AAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAG-TGA---TCTGC----------------AAAAAA-TGCAATAAAATCGTA--TACGTGTATGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGTCACGTGTTAAAT-TTGTCACTTATTA-GAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCATGG-ACTCTCACAATATAAGTGATTATCC
gi|8 : gtttatatgggggtgggggggatcctttttgaaaaatctgaaaagctaccagtattttatgtacggtatattgatgacatttttggcatctggaccggaacagaagaagaacttaaacaatttcataaaaccgcaaatgaaatacatccgaatattcagcttgacctgcgccaatctaatacaaaaacggatttccttgatgtaacgatctcaataacagacgggttcctttctacagacttgtattgcaacatatgtaccttgataaaaactctaaccaccccgaatccacaaaaaagctattccctttggacttggtctacgtgcgcgtagaatatgttcaacagaagaaaactatcagattcaacgaaagaaaataaaaaataacttcattatttagataatgactcatcaaagtagataaactcgaccgatcaaatctcttaaactacagaaaaaagacaaagcagtataatcgtgttccccttgtagtaaactattctaaaggacttcccaaaattcataaaattaaaaaaaaaaaaaatcgacaaaaaattcttgagaactctgaccacctcAGAAATGCTTTTAAAAATATGCCCATAGTACAT--GTAGCATTTTAAAAG--------ACTTAGAG------AGACATGT--TAGTA-C-ATATAAAATACTATG----ACC---TATTTTTTTAG--AAACGAAAAT-CTTTGCTCGTCATGTG--TTGTTTCAAATTA-ATTT-------TATGGCAATGTTCCATGAAAGCTAATCAATTC----------G----------------A--------------------------A----------------GACTGTAATGGTAACAAA----TAT---------CCTGTAA--AAATATATATAAATTGTACATCCAGTAATGT-------------TGT---TTTGCAACCAAAAAAAAAAATAAAAA--TGTAACAGAATCGTA--TA------TGTATGAGAAACT----TTAACT-TTATATCAAATGCCTGTGTTGAAT-TTATCACTT
gi|5 : acgaaacggtgtaattgcattccttttctgatgtaaagaactttccaatggactttccaatgttccaaaaaaaagttctcgaaaactctgatcgcctcAAAATGCTTTCCAA--TATGCCCAT------A--GTAGC-TTTCAGAAGAGATAAGAAGTTT-AA------AGACATCTTGTGGTA-C-ATAAGAAACAT-ATAAT-C------TATTTTTTTAA--AAA-GAAAACTTTGTGCGAGCCA-GTG--GTGCTAAAAAGTG-ATTTATGTCAATATG--------------------------TC----------ATAAAAACTACCAATTCG--------------------------A----------------GATTGTAACGGCAACAAAATATCAT---------AT--TAA--AAAT-TATATT-ATTGTA---TCAGTAATGTAGTT-TATGGAG-TGT---T-TGCA---------------AAAAA--TGCAAT-AAATCGTT--TA------TGTGGGAGAAACTGGTGga
gi|7 : cagacttgtattgcaaacctacgataaacatagtgtacttaataaaaactctaaccacccgaatccacaaaaaaagctattccctttggacttggtctacgttgcgcgtagaatatgtttcaacagaagaaaactatcagattcaacaaagaaaataaaaaataacttaagaaaacgcggttatttagataatgatatagaaaaagaactcatcaaagtagataaatcgaccgatcaaatctcctaaactcagaaaaagacgaagcagtctatcgtgttcccttgtagtaaactattctaaaggacttccaaatattcaaaattttaaaaaatcgacaaaaaattcttgagaactctgaccgcctcAATATGCCCAT------A--GCAGC-TTTCAGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA-C-ATAAGAAACACAATAAT---CTATTT---TTTTT--TTAAA------C-TTGTGTGAGCCATGTG--GTGCTAAAAAGTGCATTT-------TATG--------------------------TC----------A----------------ATATGTCATAAAAACTAACCAATTCGAG----------------GATTGTAACGGCAACAAA----TATCAT------AT--TAA--AAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAG-TGT---TCTGCA---------------AAAAA--TGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGCGCT-ACT------TTAGAGGCATGTGTTAAAT-TTGTCACTTATTA-GA------------------------ATTCATTTTTGCACGG-ACTCTCACAA------TGATTATTCTATA-ATAGGGA-TGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGG--GGGAAAAAT-TGAACACTTACGCACCAT-TCGGAAcact
gi|27 : AATATCCCCAA------A--GTAGC-TTTAGGAAGAGACAAATATTT---A------AGACATTG--TGATA-C-ATAAGAAACAAAATAA---------TATATTTTCAAATCAA-TATATT-TTGTG
gi|34 : AAAC-TTGTGCAATCCATGTG--GTGCTAAAACGTGTATTT-------TATG--------------------------TC----------A----------------A--------------------------
gi|4 : tT---------AT--TAAGTACAC-TATGTTTATCGTAGGTTT-GCAATACAAGT-C-TGTAGCTGTAATTATGC----------------AAAAAA-TGCAATAAAA-CGTA---A------TGTGGGAGAAACTG-TGCT-ACT-TTATATCAGAG-CATGTGTTAAAT-TTGTCACT-ATTA-GAAGAAAGACTGACGACCCGGTAGCTATT-ATTT--GCACGG-ACTCTCACAATATAAGTGATT--TC-ATA-ATAGGGA-TGGAAAAGCTG-TACAAAGATGACATTTATCGTCGATTT-GAGAAAACCTATGGAAAGAAAAAAT--GAACACTTACGCACCATCTCGGAATAAACAAACGGG-AACATTTCTGTCTTT-AAA-ATG-CGTCTTAACATGTAAACAAATAATATTGAAAATTGTTGCAT-AACT-CTTTTTATATTTGTA--TAATTATGTATGTA-------CATGTATAATTAATT-ACT--AAT-TATA----TTCATGTTTGTAATTTTACATAGGT--CAGTCA------CAACTGCT--A-------GTGTTTCT-A-ATTTCCC-TATA-TTT-GTACCATTA-------C-TACACGTAG-----TATTTCATTC-TACGCTT--------------ATATGCCGACGCGGCTAAC---AA-GC---TAT--------TGTT-AAT-TCATAGAC----------TC--TTACTA--TTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACG-TATTGTT-C-ACTTA--AT--ATCC--ACTG-TGACGTCATA------GTACTCT-AATGTGT-A------TGTGCTTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACC-GTA--ACG-C--GGTCG----A---A----ATATTT--C-------AAGAAA-GTGTTTA--GA-GT---catgtcatcaaaactaac
gi|37 : -TGT---TTTGC----------------AAAAAAAT-CAATAGAATCGTATTTA------TGTGGGAAAATGTGATGTG-ACT-T
gi|12 : -ACT-TAATATCAAAGGCACGCGTTGAAT-TTGTCACTTATAA-GAAGAGAGACTAATGACGTTGTAGCTATTCATTTCTACACAG-ATTCTC---GTATAAACAATTTTTCTATA-ATATGTA-TGGAA-AACTT-GACAAAGAT---ATTTATCGTCGTTTTAAAGAAAATCTAAGGAAGAA---------------TATGTGTCGT-TTGGACTAAACAAACGGG-AACATATTTGCCGTTGAAA-ATtaa
gi|28 : gAATATAAG-GATTAATCTATA-ATAGA-A-TGAAAAAGCTT-GACAAAGATGCCATTTATCGTCGATTT----AAAATATATTAAACAACAAAACGTAAACAaaagttctgcatgtgtgttttttttcaaattgtataaactgattttaccatgttagtattgatgtatatacaattaactactg
gi|13 : CCGT-TCAGAATAAACAAACGGGTAATATT-TTTTTTTGAAAA-GTAATGTCCTG-TATTTA------GAA-ATGGAT--TTTTTGTACGAACT-AATTTT----TTCTAAGTAATTATTGACGTA-------TATATA--ATGAACT-ACT--GGC-TGTAATGTTTTATATCAATAA-ATCACATAACC--CAGA-A----GTCAACTTCT--T------TGTGAACAT-ATATTTGAT-TGTATT
gi|6 : T-TCGGAATAAACAAACGGG-AACAAT-TTGTCTTTAAGACATGACGTCTTAACATGTAGACACAGAAGATAAAAGAT-GTTGTACGAACTGAATTTTATA-TTGTA--TAATGACGTGTGTA-------ATTGTACAATTCATT-A-GTTAATGTA-A-TGTTTCATGTTTGTAA-TTCGCATAGGT--CAGT-A----GTCAACTGCT--ACATGTATGTGTTCAT-A-ATTACTC-CATATATT-GTAACATTA-------A-T---TATA------TATTTCATTC-TATGCTTATTCATCGTTGAGGATATGCTGACGGGGCTAAGT--AA-GC---TAAT-------TGTT-AAATTCATAGAC----------TC--TTACTATTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACAATACTGTT-CAATTCA--AT--ATCC--ATTG-TGACGTCACA------GTACTCT-AATGTAT-GTAG--TCGTGCGTT--GTTGTT------TGCT-ACGG-AAAATAAACACGAC-TAATCAAG--ACAGCT---ACG-CAAGATCG----A---A----ATATTT--C-------AAGAAA-GTGTTTA--gaatatatacatacacaattagtgattgatgtatcaatttaatatatttaagtgtat
gi|15 : -ATTTTTATA-TTGTA--TAATCATGTATGTAGTATGTACATGTACAATTAATTTACT--AAT-GGTA-TATTTCATGTTTGTAA-TTCACATATAT----AT-A-------------T--A------TATATATGT-C-AGTTACT-TATAT-------------------------------------ATTTCATTC-TACGCTTATTCATCCTTGAGGATATGCCGACGCGGC-AACG--TA-GCTATTCAAAGGCTATTGTT-AAT-TCATAGACGAGTTGTAGTTC--TTACTATTTTCAAATGTT----TTGCG
gi|29 : AATTAATT-ACT--GAC-TGTAATATTTCATGTTTATAT-TTCACATAGGCCGCAGA-A----GCCAACTGCTAAA------TGTATGCGT-
gi|39 : tta-TTCGCATAGGT--CAGT-ACTTAGTCAACTGCT--A------TGTGTTtc
gi|11 : CT--A------TTTATTTATTA-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TACACGTATGTATTTCATTC-TACGCTTAT--------------ATGCCGACGCGGCTAACA--TA-GC---TAT--------TGTT-AAT-TCATAGAC----------TC--TTACTATTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACTTA--AT--AT-CC-ACTG-TGACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCG----A---A----ATATTT--C-------AAGAAA-GTGTTTA--GA-GTTG-TTT----------T---TTT---TT---TAT--TT
gi|10 : atCT--A------TTTATTTATTG-ATTTCCCCTATATTTTTGTACCATTAACTTACACGT---TATG------TATTTCATTCCTACGCTTAT------------A-ATGCCGACGCGGCTAACAA-TA-GC---TAT--------TGTTTAATTTCATAGAC----------TTCTTTACTATTT-CAGTAGTT----TTGCGCGTAAATTTTCAACTTGTGGCGTTATTGTTTCAACTTAGCATTAAT-CCAACTGGTGACGTCATA------GTACTTTTAATGTGTTGTAG--TTGTGCGTTTGG-TGGT------TGCTTACGGGAAAATAA-CACGACCTGATGAAG--ACCGGTA--ACGCC--CGTCGAAATA---A----TTT--T--CA------AAGAAACGTG-TTA--GA-GTTTGTTT----------T---TTT---TT---TAT--TTatttaaggataaactttacatcatctaagttagatttttaatt
gi|16 : tATTC-TACGCTTAGTAATCCTTAATGATATGTAGACGGGG-TAAGG--TA-GC---TAT--------TGTT-AATTTCATA--------------C--TT----TTGTCAAATGTC----TTGCGGGTAA--TTTCAGCT-ATGACGTTGCTGAT-CAACTTG--AT--AC-CC-ATCT-TGACGTTTCA------GTGCTGT-TAT-CAT-GTAG--TTGTGCATT--G-TG-T------TGCT-ACGG-AAAATAAACATGAC-CAGTAAAA--ACattttaaggataa
gi|36 : taatttcgcctttttgtGCTAATTAATATGC---TAT--------TGTT-AAT-TCATAGAC----------TC--TTGCTATTTTt
gi|14 : ttaacattctattatatTT-AATA----AGAC----------AT--TGACT--TTTTAAGTGTTCTTTTTTCGCGCAA--CTTCTACT-ATGCTATTCCTGT---AAC-----AC--AT-T--TTTA--AACGT-----------TACT------GTGC-ATAG--TC-----TT--G-CA-AAAAAAATACT-ATGA-TAAATAAAAACAAC-TGAAGTA---ACAAGTA--ACG-T--AGTCG----ATATA----TT---T--C-------AACAAA-GTGTTTA--GA-G---------------------TTG---TG---TAT--TTTTAACATTTCGAT-GAAAGA
gi|41 : aagctatttttgatttcgtcatagacTTATTGTT-CAACTTA--AT--ATCC--ACGG-TGACGcgaaatatatagat
gi|35 : T-CAACTTA--AT--AT-CC-ACTG-TGACGTCATACATGTAGTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-T
gi|40 : -TGACGTCATA------GTACTCT-AATGTGT-GTAG--T
gi|22 : tcaGATGTCAGT------GT-TTCT-G-TGTGT-GTAGACTTGTG---T--A-TG-T------TGCT-ATAA-TAAATAAACACAAC----TGAAG--ATTGGTA--ACA-T--GGTCA----A---A----TTA--T--T-------TAAAAA-ATGTATAAGGA-GG---TTTATATATATCAT---TTT---TC---TAT--TTTT---
gi|25 : ------TGCT-ATGA-TAAATAAAATCGAC---AT-AGGTAACCAGTA--ACG-T--AGACA----A---A----ATA--TTTC-------AACAAA-GTGTTTA--GA-AT---TGT----------G---TTT---TTAAACAT--TT---------CGAT-GAAAG
gi|21 : -AAAATAAACACGAC-TGAGGAAG--ACCGGTA--ACG-C--AGTCG----A---A----ATATTT--C-------AAGAAA-GCTTTTA--AA------TTT----------T---TTT---TC---AAT--TTTT---ATTCTGAT-AAAAGAGA
gi|24 : tactttaatttatagctaattttactctattAAATAAACAGAAC-TGCAGAAG--ACTGGTA--ACA-C--AGTCA----A---A----ATA--T--TTTCTTTTAAAATA--TGTTTA--G-------TTT----------T---CCT---TT---TATAATTCT---ACTCCGAT-AAAAGAGACTTTGTGTagtactccgataaataga
gi|31 : ttgttatCGAG-TGGTGAAG--ACCGTTA--AGG-C--GGTCG----A---A----ATA--T--TGG-----AAGAA-------------------------------------TT---TT---AAA--TTTT---ACTCCGAT-TAAAGATACTTTATAatgt
gi|33 : CGAT-TGGTGAAG--ACTGGCG--ACG-C--TGTCC----A---A----ATATTT--C-------AAGAAA-GTGTTTA--CA-GG---ATT----------G---TTTAAAAT---TAT--TTT
gi|26 : GAAG--ACCGGTATAACGGC--GGTCG----A---AAATGTT---T--C-------AAGAAA-GT--TTA--AG-GT---TTT----------T---TTT---AA---AAA--TTTT---ACTCCGATGGAAAGAGAaca
gi|38 : AG--ACCGGTA--ACA-C--AGCTA----A---A----ATATTT--C-------AGAAAA-GT-TTTC--AA-GT---TTT----------tatatatttgaaata
gi|30 : g--ACTGGTA--ACA-C--GGTCG----A---A----ATATGT--C-----------AA-GTGTTTA--GAGGT---TTT----------TGGGTTT---TT---TTT--CCTT---A
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TAATATCGGGAGATCGGAACAAATCATGTGTTGAAAAATCTTAATAGCTACCATTATTATATGTACTATGTATTGATGACTCTTTTGGAATATGTACCGGAACAGAATAACGTAAACAATTTTATACATTCCTTGACCTGCGACAATTTAATACCAAAACAGGTTTCCTTGATATAACGAACTCAATAGCGGGTGGATCCTTTTCCACTTAATTATATTGCAAACCTACCGATAAACATACACATCTTAATAAAAGCTCTGACCAACCCGAATTGACAAAACACTATTCGCTTTGGACTTGGTGTATGTGCCTGTAGAATATGTTCAATAGAAGAAAAATACCAGCTTCAACGAAAGACAATAAAAAACAACGT
Unaligned ( gi|17 ): TAAACTACAGTAAAAAGACGAAACGGTGTAATCGCGTTCCTTTTCTGATATAAAGGACTTTCCAATGGACTTTCCAATATTCAAAAAAAAAAAAAATTTGAGAACTTTGACCACTCCAAGAAGGCTTTTAGAAATACGCCCATATTACATGTAGCATTTCGGAAGAGAGGCATTTTGGTACATATAAAAGAATTTATTCAATAAAAAAA
Unaligned ( gi|18 ): AACTACGAGTAAAAAGACGAAACGGTGTAATCGCGTTCCTTTTCTGATATAAAGGACTTTCCAATGGACTTTCCAATATTCAAAAAAAAAAATTTTGAGAACTTTGACCACGTCCAAGAAGGCTTTTAAAAATACGCCCATATTAACATGTAGCATTTCGGAAGAAGAGGCATTTTGGTAACTATAAAAGAC
Unaligned ( gi|19 ): ACGCGGTTATTTAGATAATGATATACTGTAGAAAAAGAACTCATCAAAGTAGATAAACTCGACTGATCAAATCTCCTAAACTACAGAAAAAAGACGAAGCAGTATAATCGTGTTCCCCTTGTAGTAAACTACTTTAAAGGACTTCCCAATATTCATAAA
Unaligned ( gi|20 ): TGTTTATATGGGGGGATGGGAAAAAATCCTTTTTGAAAAATCTGAAAAGCTACCAGTATTTTATGTACGGTATATTGATGACATGTTTGGCATCTGGACCGGAACTGAAGAAGAACTTAAACCGCGAATGAAATACATCCGAATATTC
Unaligned ( gi|23 ): GTTTACATGGGGGTATGGGGGAATGGGTACAAATCCTTTCTGAAAATCTGCTAATATTTTATGTACAATATTTTGATGACATTTATTGCATCTAGACCGCCACAGAGGAACTTAAACA
Unaligned ( gi|32 ): TAAAAGCTCGAACCACCCCGAATCCATCAAAAAAAAAAAAAAAACCTATTCCCTTTGGACTTGGTCTACGTGCGTG
Alignments
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 3333333 111111 1 111111 333333333333 1111111 5555555555555555555555555555555555555555555555555555555555555555555555555 111111 22222222222222 1 111111 11 1 777777777777777777777777 1 1 222222222 11 11111 111111 111 44444444444444444444444 8888888888888888 2222222222222222 1111 1111111111 1111111111 1111 11 111111 11111111 11111111111111111111111
lowQualScore : 0 3333333 222222 3 22 22 0 2 777777 66 66 66 0 777777777777 66 5 5 77 1 6 8888888 1111111111111111111111111111111111111111111111111111111111111111111111111 6 999999 6 3 6 3 3 3 99999999999999 2 0 66 444444 0 4 0 4 4 0 1 5 6 5 1 6 1 0 1 6 2 6 6 1 7 4 3 22 33 0 5 6 6 6 5 7 1 000000000000000000000000 3 3 7 1 77 5 5 77 1 444444444 5 5 33 5 66 5 5 1 77 5 66666 66 222222 1 222 5 1 6 99999999999999999999999 5 8888888888888888 0 6666666666666666 4 4 4 4 3333 9999999999 66 9999999999 0000 77 5 0 3 4 1 4 66 66 66 3 4 55 111111 4 4 55 0 66 4 77777777 4 4 3 33 33 5 33 2 33 555555 2 33 99999999999999999999999 555 555 44 777 5
lowQualScore : . ....... ...... . .. .. . . ...... .. .. .. . ............ .. . . .. . . ....... ......................................................................... . ...... . . . . . . .............. . . .. ...... . . . . . . . . . . . . . . . . . . . . . . . .. .. . . . . . . . . ........................ . . . . .. . . .. . ......... . . .. . .. . . . .. . ..... .. ...... . ... . . . ....................... . ................ . ................ . . . . .... .......... .. .......... .... .. . . . . . . .. .. .. . . .. ...... . . .. . .. . ........ . . . .. .. . .. . .. ...... . .. ....................... ... ... .. ... .
lowQualScore : 7 3333333 888888 3 44 00 7 0 222222 11 11 11 4 111111111111 99 7 7 99 4 6 6666666 8888888888888888888888888888888888888888888888888888888888888888888888888 7 222222 7 2 7 2 4 2 44444444444444 4 4 99 444444 4 5 1 4 4 7 4 7 7 2 7 7 4 1 7 7 5 7 7 5 3 2 2 33 88 7 7 7 0 7 5 3 0 333333333333333333333333 2 2 7 4 99 7 7 99 4 333333333 0 0 77 7 44 7 7 4 99 7 44444 11 888888 1 333 7 7 7 22222222222222222222222 7 0000000000000000 1 6666666666666666 4 4 4 4 9999 4444444444 11 4444444444 6666 99 7 1 4 4 9 4 11 11 99 9 0 00 555555 0 0 55 1 11 4 00000000 4 0 1 44 77 3 77 7 77 888888 7 77 44444444444444444444444 888 888 66 888 7
consensus : NNAAAAATGCTTTCCAAAATATGCCCATA-------GTA------GC-TTTCGGAAGAGATAAGAATTTAAA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTA--TNT-TTTTTAA--AAA-GAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTT-------TATG-CAAT-T--CAT-AAA-CTAA-CAATTC----------G----------------AG----------------GATTGTAACGGCAAC-AAATATCATA------TTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGCAA--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCTA-CT-TTATATCAGAGGCACGCGTTAAAT-TTGTCACTTATTA-GAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCACGG-ACTCTCACAATATAAGTGATTATTCT-ATAATAGGGA-TGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGTA-A--------CA-AGAA-ATA--GAAAATTGTTGTACGAACT-ATTTT--TATA-TT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CTAATTGT-A-TAT-TTCATGTTTGTAA-TTCACATAGGT--CAGT-A----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACGCTTATTCA--T-C-TTGA-G-ATATGCCGACGCGGCTAACG-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCCCACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
Reference ( family-1143 ) : NNAAAAATGCTTTCCAAAATATGCCCATA-------GTA------GC-TTTCAGAAGAGATAAGAATTTAAA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CT---TAT-TTTTTAA--AAA-GAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTT-------TATG--------------------------TC----------A----------------AG----------------GATTGTAACGGCAAC-AAATATCATA------TTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGCAA--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCTA-CT-TTATATCAGAGGCACGTGTTAAAT-TTGTCACTTATTA-GAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCACGG-ACTCTCACAATATAAGTGATTATTCT-ATAATAGGGA-TGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCGCCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGTAGA--------CA-AGAA-ATA--GAAAATTGTTGTACGAACT-ATTTT--TATA-TT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CTAATTGT-A-TAT-TTCATGTTTGTAA-TTCGCATAGGT--CAGT-A----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACGCTTATT-A--T-C-TTGA-G-ATATGCCGACGCGGCTAACG-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTACTGTT-CAACT-TA--AT--ATCCCACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
gi|1 : AAAAATGCTTTCCAAAATATGCCCATA-------GTA------GC-TTTCAGAAGAGATAAGAATTCAAA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---GTA--TAT-TTAA-AA--AAA-GAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAA-GTGCATTT-------TATG--------------------------TCAATATGTCATA----------------AGAACTAACCAATTCGATGATTGTAACGGCAAC-AAATATCATAATATTATTAGAAAT-TACATCAATTGTAAAATCAGTAATGTAGTTGTATGG-GTGTTCTGCAA--------------AAAA-TGCAAGTCAAT-GTA--TA------TGTGGGAGAA-CTGTTGCTA-CTATTATATCAGAGGCATGTGTTTTATGTTGTCA-TTATTAAGAAGGAAGACTGA--GCCCGGTAGCTATTCATTTTTGCACGGGACTCTCACAATATA-GTGATTATTCTTATA-TAGGGAATGGAAAAGCTGATACAAAGATGACATTTATCGTCGATTTAGAGAAAACCCATGGAAG-AAGAAAT-TGATCACTTACGCA-CAT-TCGGAATAAACAAACGGG-AACATTTGTGTCTTTTAAA-ATG-CGTCTTAA--------------------------A--GAAAATTGTTGTAT-AACT-ATTTT--TATA-TT-GCA--TAATTATTTATGTA-------CATGTACAATTAATT-A-CTAA-TGT-A--ATATTCATGGTT
gi|10 : gttttaatccagttcacaatttgacactaaacgctcctggtctgataatatgggatggttgcatgagtgtaactaaatctcatatttgacaaaactctgataaagctatccaagtcatttatacatgatgacgcgatattattgtatgtatcgatttttggcatctggatccgagaacatgatcagtaagaacttaaacaattcataaacgcgaatgaaatacatccgaatattcagcttgacttgcgacaatctaatgcaaaaaacggatttccttgatgtaacgatctcaatagcaaatggattcctttctacagacttgtatcgcaaacctaccgatagacatacgtaccttaataaaacttctaatcaccccgaatccacaaaaaagctattccctttggacttggtctacgtgcgtgtagaatatgtacaacaaaagaaaaatatcagattcaacgaaagaaaatgaaaaataacaaaataaaacgcggttattcatataatgatttagaaaaagaactcatcaaagtagataaactcgacagttctaatctcctaaactacagaaaaaagacgaagcagtataatcgtgttccccttgtagtaaactactccagaggacttcccaatattcataacatttataaaaaatcgacaaaaaattcttgagatttctgaccgcctcCT--A------TTTATTTATTG-ATTTCCCCTATATTTTTGTACCATTAACTTACACGT---TATG------TATTTCATTCCTACGCTTAT----------------A-ATGCCGACGCGGCTAACAATA-----------GCTA-TTGTTTAA-T-TT---CATAGAC----------TTCTTTACTA----------TTT-CAGTAGTT----TTGCGCGTAAATTTTCAACTTGTGGCGTTATTGTTTCAACT-TAGCATTAATCCAACTGGT--GACGTCATA------GTACTTTTAATGTGTTGTAG--TTGTGCGTTTGG-TGGT------TGCTTACGGGAAAATAA-CACGACCTGATGAAG--ACCGGTA--ACGCC--CGTCGAAA-TAATTTTCAA----AGAAACGTG-TTA--GA-GTTTGTTT----------T---TTT---TT---TAT--TT
gi|11 : tCT--A------TTTATTTATTA-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TACACGTATGTATTTCATTC-TACGCTTAT------------------ATGCCGACGCGGCTAACA-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCC-ACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GTTG-TTT----------T---TTT---TT---TAT--TTattttaaggataa
gi|12 : atA-CT-TAATATCAAAGGCACGCGTTGAAT-TTGTCACTTATAA-GAAGAGAGACTAATGACGTTGTAGCTATTCATTTCTACACAG-ATTCTC---GTATAAACAATTTTTCT-ATAATATGTA-TGGAAAA-CTT-GACAAAGAT---ATTTATCGTCGTTTTAAAGAAAATCTAAGGAAGAA---------------TATGTGTCGT-TTGGACTAAACAAACGGG-AACATATTTGCCGTTGAAA-ATAAAGTTCT-GCATGTGTGTTTTTTTTCA-A----------------ATTGTATAAACTGATTTTACCATG-TTAGTA--T-----TG-ATGT---------ATATACAATTAACT-A-CTatttaaggataaactttacatcatctaagttagatttttaatt
gi|13 : gCCGT-TCAGAATAAACAAACGGGTAATATTTTT-TTTTGAAAA-GTAATGTCCT-GTATTT--------------AGAA-ATG--G--ATTTTTTGTACGAACT-AATTT--T----TT-CTAAGTAATTATTGACGT---------ATATATAATGAACT-A-CTGGCTGTAA-TGT-TTTATATCAATAA-ATCACATAACC--CAGA-A----GTCAACTTCT--T------TGTGAACAT-ATATTTGAT-TGTATTg
gi|14 : A-----------GCTA-TTTTT-GA-T-TTCGTCATAGAC----------T----TAATAAGACATTGACTTTTTAAGTGTTCTTTTTTCGCGCAA--CTTCTACT-ATG------CTATT-C--CTGTA--AC--A---CATTT-TTAAACGT-----------TACT------GTGC-ATAG--TC-----TT--G-CA-AAAAAAATACT-ATGA-TAAATAAAAACAAC-TGAAGTA---ACAAGTA--ACG-T--AGTCGATA-TA--TTTC-A----ACAAA-GTGTTTA--GA-G---------------------TTG---TG---TAT--TTTTAACATTTCGAT-GAAAGAgaatatatacatacacaattagtgattgatgtatcaatttaatatatttaagtgtat
gi|15 : a-ATTTT--TATA-TT-GTA--TAATCATGTATGTAGTATGTACATGTACAATTAATTTA-CTAATGGT-A-TAT-TTCATGTTTGTAA-TTCACATATAT----AT-A-------------T--A------TATATATGT-C-AGTTACT-TATAT-------------------------------------ATTTCATTC-TACGCTTATTCA--TCC-TTGAGG-ATATGCCGACGCGGC-AACG-TAGCTATTCAAAGGCTA-TTGTT-AA-T-T----CATAGACGAGTTGTAGTTC--TTACTA----------TTTTCAAATGTT----TTGCGcgaaatatatagat
gi|16 : ATTC-TACGCTTAGT-AATC-C-TTAATG-ATATGTAGACGGGG-TAAGG-TA-----------GCTA-TTGTT-AA-T-T---------------------TC--ATACTT----------TTGTCAAATGTC----TTGCGGGTAA--TTTCAGCT-ATGACGTTGCTGAT-CAACT-TG--AT--A-CCCATCT-T--GACGTTTCA------GTGCTGT-TAT-CAT-GTAG--TTGTGCATT--G-TG-T------TGCT-ACGG-AAAATAAACATGAC-CAGTAAAA--AC
gi|17 : taatttcgcctttttgtAAGAAGGCTTTTAGAAATACGCCCATATTACAT-GTA------GCATTTCGGAAGAG-------------------AGGCATTT--TGGTA--CAT-------ATAAAAGAAT----T---TAT-TCAATAA--AAA-AAt
gi|18 : taaactacagtaaaaagacgaaacggtgtaatcgcgttccttttctgatataaaggactttccaatggactttccaatattcaaaaaaaaaaaaaatttgagaactttgaccactccAAGAAGGCTTTTAAAAATACGCCCATATTAACATGTA------GCATTTCGGAAG------------AAG------AGGCATTT--TGGTAACTATA--AAAGAC
gi|2 : aactacgagtaaaaagacgaaacggtgtaatcgcgttccttttctgatataaaggactttccaatggactttccaatattcaaaaaaaaaaattttgagaactttgaccacgtccAAAAATGCTTTCCAAAATATGCCCATATA-----GTA------GC-TTTCAGAAGAGATAAGAATTTAAATATAAAAGACATCT--TGGTA--CATATAAGAAACACAATAAT---CTA--TTT-TTTTTAA--AAA-GAAAAC-TTGTGCGAGCCATGTATAGTGCTGAAAAGTGCATTT-------TATGTCAATATGTCATAAAAACTAACCAATTC----------G----------------AG----------------GATTGTAACAGCAAC-AAATATCATA------TTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGATCTGCAA--------------AAAA-TGCAATAAAATCGTA--TACGTGTATGTGGGAGAAACTGGTGCTA-CT-TTATATCAGAGTCACGTGTTAAAT-TTGTCACTTATTA-GAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCATGG-ACTCTCACAATATAAGTGATTATCC
gi|21 : gtttatatgggggtgggggggatcctttttgaaaaatctgaaaagctaccagtattttatgtacggtatattgatgacatttttggcatctggaccggaacagaagaagaacttaaacaatttcataaaaccgcaaatgaaatacatccgaatattcagcttgacctgcgccaatctaatacaaaaacggatttccttgatgtaacgatctcaataacagacgggttcctttctacagacttgtattgcaacatatgtaccttgataaaaactctaaccaccccgaatccacaaaaaagctattccctttggacttggtctacgtgcgcgtagaatatgttcaacagaagaaaactatcagattcaacgaaagaaaataaaaaataacttcattatttagataatgactcatcaaagtagataaactcgaccgatcaaatctcttaaactacagaaaaaagacaaagcagtataatcgtgttccccttgtagtaaactattctaaaggacttcccaaaattcataaaattaaaaaaaaaaaaaatcgacaaaaaattcttgagaactctgaccacctc-AAAATAAACACGAC-TGAGGAAG--ACCGGTA--ACG-C--AGTCGAAA-TA--TTTC-A----AGAAA-GCTTTTA--AA------TTT----------T---TTT---TC---AAT--TTTT---ATTCTGAT-AAAAGAGA
gi|22 : tactttaatttatagctaattttactctatt--GATGTCAGT------GT-TTCT-G-TGTGT-GTAGACTTGTG---T--A-TG-T------TGCT-ATAA-TAAATAAACACAAC----TGAAG--ATTGGTA--ACA-T--GGTCAAAT-TA--TTT-------AAAAA-ATGTATAAGGA-GG---TTTATATATATCAT---TTT---TC---TAT--TTTT---agtactccgataaataga
gi|24 : AAATAAACAGAAC-TGCAGAAG--ACTGGTA--ACA-C--AGTCAAAA-TA--TTTT-CTTTTAAAAT-ATGTTTA--G-------TTT----------T---CCT---TT---TATAATTCT---ACTCCGAT-AAAAGAGACTTTGTGT
gi|25 : ttgttat------TGCT-ATGA-TAAATAAAATCGAC---AT-AGGTAACCAGTA--ACG-T--AGACAAAA-TA--TTTC-A----ACAAA-GTGTTTA--GA-AT---TGT----------G---TTT---TTAAACAT--TT---------CGAT-GAAAGatgt
gi|26 : GAAG--ACCGGTATAACGGC--GGTCGAAAATG--TTTC-A----AGAAA-GT--TTA--AG-GT---TTT----------T---TTT---AA---AAA--TTTT---ACTCCGATGGAAAGAGA
gi|27 : AATATCCCCAAA-------GTA------GC-TTTAGGAAGAGACAAATATTT--A------AGACATTG--TGATA--CATA--AGAAACAAAATAA---------TATATTTTCAA--Atatatatttgaaata
gi|28 : AATATAAG-GATTAATCT-ATAATAGA-A-TGAAAAAGCTT-GACAAAGATGCCATTTATCGTCGATTT----AAAATATATTAAACAACAAAACGTAAACAtcaatatattttgtg
gi|29 : AATTAATT-A-CTGACTGT-AATAT-TTCATGTTTATAT-TTCACATAGGCCGCAGA-A----GCCAACTGCTAAA------TGTATGCGT-
gi|3 : ttaAAAAATACTTTCCAAAATATGCCCATC-------GTA------GC-TTTTAGAAGAGATAAGAATTTAAA------AGACGTCT--TGGTA--AATA--AGAGACACAATAATACACCATGTATATTTTTAATTAAA-GAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTT-------TATG--------------------------TC----------A----------------AG----------------GATTGTAACGGCAAC-AAATAT---A------TTAAAAAT-TACATTAATTGTAAATCCAGTAACATAATT-TATGGAGTGTTCTGCAA--------------GAA--TGCAATAAAATCGTA--TG------TGTGGGAAAAACTGGTGTTA-CT-TGATATCAGAGGCATGCGTTAAAT-TTGTCATTTATTA-GAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCACGA-ACTTTCACAATATAAGTGATTATTCT-ATAATAGGGA-TGAAAGAGCTT-TACAAAGATGGCATGTATCATCGATTTAGGGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCAT-TCGGAATAAACAAACGGG-AACATTATTGTCTTTAAAA-ATG-CGTCTTAACATGTAAA--------CAGAGAATATA--GAAAATTGTTGTAC-AACT-ATTTT--TATA-TT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CGAATTAT-A-TAT-TTCATGTTTGTAA-TTCACATAGGT--CAGT-A----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACACTTATTCA--TCC-TTAAGG-ATATGCTGACGCGGCTAACT-TA-----------GCTC-ATGTT-AA-TAT----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--AT--CACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAT-TA----TC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTATtc
gi|30 : ta--ACTGGTA--ACA-C--GGTCGAAA-TA--TGTC---------AA-GTGTTTA--GAGGT---TTT----------TGGGTTT---TT---TTT--CCTT---A
gi|31 : CGAG-TGGTGAAG--ACCGTTA--AGG-C--GGTCGAAA-TA--TTGG-A----AGAA-------------------------------------TT---TT---AAA--TTTT---ACTCCGAT-TAAAGATACTTTATtatataaaaagcatttac
gi|33 : CGAT-TGGTGAAG--ACTGGCG--ACG-C--TGTCCAAA-TA--TTTC-A----AGAAA-GTGTTTA--CA-GG---ATT----------G---TTTAAAAT---TAT--TTTa
gi|34 : AAAC-TTGTGCAATCCATGTG--GTGCTAAAACGTGTATTT-------TATG--------------------------TC----------A----------------Aaca
gi|35 : tT-CAACT-TA--AT--ATCC-ACTG-T--GACGTCATACATGTAGTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-Tcatgtcatcaaaactaac
gi|36 : -ATATGCTAAT-----TAATA-T------------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTGCTA----------TTTT
gi|37 : ttaacattctattTGTTTTGCAA--------------AAAAAT-CAATAGAATCGTATTTA------TGTGGGAAAATGTGATGTGA-CT-TTA
gi|38 : AG--ACCGGTA--ACA-C--AGCTAAAA-TA--TTTC-A----GAAAA-GT-TTTC--AA-GT---TTT----------a
gi|39 : g-TTCGCATAGGT--CAGT-ACTTAGTCAACTGCT--A------TGTGTT
gi|4 : TTATGCAA--------------AAAA-TGCAATAAAA-CGTA---A------TGTGGGAGAAACTG-TGCTA-CT-TTATATCAGAG-CATGTGTTAAAT-TTGTCACT-ATTA-GAAGAAAGACTGACGACCCGGTAGCTATT-ATTT--GCACGG-ACTCTCACAATATAAGTGATT--TC--ATAATAGGGA-TGGAAAAGCTG-TACAAAGATGACATTTATCGTCGATTT-GAGAAAACCTATGGAAAGAAAAAA--TGAACACTTACGCACCATCTCGGAATAAACAAACGGG-AACATTTCTGTCTTT-AAA-ATG-CGTCTTAACATGTAAA--------CA-AATA-ATATTGAAAATTGTTGCAT-AACT-CTTTT--TATATTT-GTA--TAATTATGTATGTA-------CATGTATAATTAATT-A-CTAATTAT-A-----TTCATGTTTGTAATTTTACATAGGT--CAGTCA------CAACTGCT--A-------GTGTTTCT-A-ATTTCCC-TATA-TTT-GTACCATTA-------C-TACACGTAG-----TATTTCATTC-TACGCTT------------------ATATGCCGACGCGGCTAACA--A-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA------------TTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACG-TATTGTT-C-ACT-TA--AT--AT-CCACTG-T--GACGTCATA------GTACTCT-AATGTGT-A------TGTGCTTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACC-GTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---
gi|40 : tattaagtacactatgtttatcgtaggtttgcaatacaagtctgtagctgtaa-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--T
gi|41 : tcaTTATTGTT-CAACT-TA--AT--AT-CCACGG-T--GACG
gi|5 : AAAATGCTTTCCAA--TATGCCCATA-------GTA------GC-TTTCAGAAGAGATAAGAAGTTTAA------AGACATCTTGTGGTA--CATA--AGAAACAT-ATAAT---CT---ATT-TTTTTAA--AAA-GAAAACTTTGTGCGAGCCA-GTG--GTGCTAAAAAGTG-ATTTATGTCAATATG--------------------------TC----------ATAAAAACTACCAATTCGA----------------GATTGTAACGGCAACAAAATATCATA------TTAAAAAT-TATATT-ATTGTA---TCAGTAATGTAGTT-TATGGAGTGTT-TGC-A--------------AAAAATGCAAT-AAATCGTT--TA------TGTGGGAGAAACTGGTGC-A-CT-
gi|6 : cagacttgtattgcaaacctacgataaacatagtgtacttaataaaaactctaaccacccgaatccacaaaaaaagctattccctttggacttggtctacgttgcgcgtagaatatgtttcaacagaagaaaactatcagattcaacaaagaaaataaaaaataacttaagaaaacgcggttatttagataatgatatagaaaaagaactcatcaaagtagataaatcgaccgatcaaatctcctaaactcagaaaaagacgaagcagtctatcgtgttcccttgtagtaaactattctaaaggacttccaaatattcaaaattttaaaaaatcgacaaaaaattcttgagaactctgaccgcctcT-TCGGAATAAACAAACGGG-AACAATTT-GTCTTTAAGACATGACGTCTTAACATGTAGA--------CACAGAAGATA--AAAGAT-GTTGTACGAACTGAATTT--TATA-TT-GTA--TAATGACGTGTGTA-------ATTGTACAATTCATT-AGTTAAT-GT-AATGT-TTCATGTTTGTAA-TTCGCATAGGT--CAGT-A----GTCAACTGCT--ACATGTATGTGTTCAT-A-ATTACTC-CATATATT-GTAACATTA-------A-T---TATA------TATTTCATTC-TATGCTTATTCA--T-CGTTGA-GGATATGCTGACGGGGCTAA-G-TAA----------GCTAATTGTT-AAAT-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACAATACTGTT-CAATT-CA--AT--AT-CCATTG-T--GACGTCACA------GTACTCT-AATGTAT-GTAG--TCGTGCGTT--GTTGTT------TGCT-ACGG-AAAATAAACACGAC-TAATCAAG--ACAGCT---ACG-CAAGATCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--
gi|7 : AATATGCCCATA-------GCA------GC-TTTCAGAAGAGATAAGAATTTAAA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTTTT-TTTTTAA--A--------C-TTGTGTGAGCCATGTG--GTGCTAAAAAGTGCATTT-------TATGTCAATATGTCATAAAAACTAACCAATTC----------G----------------AG----------------GATTGTAACGGCAAC-AAATATCATA------TTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGC-A--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGCGCTA-CT-TT-----AGAGGCATGTGTTAAAT-TTGTCACTTATTA-GA------------------------ATTCATTTTTGCACGG-ACTCTCACAA------TGATTATTCT-ATAATAGGGA-TGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGG--GGGAAAAAT-TGAACACTTACGCACCAT-TCGGAA
gi|8 : AGAAATGCTTTTAAAAATATGCCCATA-------GTACATGTAGCATTTTAAAAGA--------CTTAGAG-----AGACATGT--TAGTA--CATA--TAAAATACTATGAC---CT---ATT-TTTTTAG--AAACGAAAAT-CTTTGCTCGTCATGTG--TTGTTTCAAATTA-ATTT-------TATGGCAATGTTCCATGAAAGCTAATCAATTC----------G----------------AA----------------GACTGTAATGGTAAC-AAATATCCTG------T-AAAAATATATATAAATTGTACATCCAGTAATGT------------TGTTTTGCAACCAAAAAAAAAAATAAAAATGTAACAGAATCGTA--TA------TGTATGAGAAACT----TTAACT-TTATATCAAATGCCTGTGTTGAAT-TTATCACTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAATATCGGGAGATCGGAACAAATCATGTGTTGAAAAATCTTAATAGCTACCATTATTATATGTACTATGTATTGATGACTCTTTTGGAATATGTACCGGAACAGAATAACGTAAACAATTTTATACATTCCTTGACCTGCGACAATTTAATACCAAAACAGGTTTCCTTGATATAACGAACTCAATAGCGGGTGGATCCTTTTCCACTTAATTATATTGCAAACCTACCGATAAACATACACATCTTAATAAAAGCTCTGACCAACCCGAATTGACAAAACACTATTCGCTTTGGACTTGGTGTATGTGCCTGTAGAATATGTTCAATAGAAGAAAAATACCAGCTTCAACGAAAGACAATAAAAAACAACGT
Unaligned ( gi|19 ): ACGCGGTTATTTAGATAATGATATACTGTAGAAAAAGAACTCATCAAAGTAGATAAACTCGACTGATCAAATCTCCTAAACTACAGAAAAAAGACGAAGCAGTATAATCGTGTTCCCCTTGTAGTAAACTACTTTAAAGGACTTCCCAATATTCATAAA
Unaligned ( gi|20 ): TGTTTATATGGGGGGATGGGAAAAAATCCTTTTTGAAAAATCTGAAAAGCTACCAGTATTTTATGTACGGTATATTGATGACATGTTTGGCATCTGGACCGGAACTGAAGAAGAACTTAAACCGCGAATGAAATACATCCGAATATTC
Unaligned ( gi|23 ): GTTTACATGGGGGTATGGGGGAATGGGTACAAATCCTTTCTGAAAATCTGCTAATATTTTATGTACAATATTTTGATGACATTTATTGCATCTAGACCGCCACAGAGGAACTTAAACA
Unaligned ( gi|32 ): TAAAAGCTCGAACCACCCCGAATCCATCAAAAAAAAAAAAAAAACCTATTCCCTTTGGACTTGGTCTACGTGCGTG
Alignments
lowQualScore : 4444444 1 111111 111 22222 888888888888888888888888 111 111111 2222222222222222 111111 1 8888888888888888888888888888 1 1 1 222222222 11111 111111 111111 111 44444444444444444444444 7777777777777777 2222222222222222 1111 1111111111 1111111111 1111 1111 111111 11111111 11111111111111111111111
lowQualScore : 0 6666666 3 0 1 22 22 0 66 222222 66 66 66 1 000 00000 99 6 5 77 3 6 5 222222222222222222222222 666 5 6 999999 6 3 6 3 3 9999999999999999 6 0 66 444444 4 44 4 0 1 1 5 6 5 1 6 1 0 1 6 99 6 1 7 4 3 99 1 0 5 6 88 5 3 2 2222222222222222222222222222 3 3 7 1 77 1 77 1 444444444 5 5 33 5 11111 5 77 555555 66 222222 1 222 5 1 99 99999999999999999999999 5 4444444444444444 6666666666666666 4 4 4 4 3333 9999999999 66 9999999999 0000 77 5 0 0 4 4 66 66 6666 4 55 111111 4 4 55 0 66 4 77777777 4 4 3 33 33 5 33 2 33 555555 2 33 99999999999999999999999 555 555 44 777 5
lowQualScore : . ....... . . . .. .. . .. ...... .. .. .. . ... ..... .. . . .. . . . ........................ ... . . ...... . . . . . ................ . . .. ...... . .. . . . . . . . . . . . . . .. . . . . . .. . . . . .. . . . ............................ . . . . .. . .. . ......... . . .. . ..... . .. ...... .. ...... . ... . . .. ....................... . ................ ................ . . . . .... .......... .. .......... .... .. . . . . . .. .. .... . .. ...... . . .. . .. . ........ . . . .. .. . .. . .. ...... . .. ....................... ... ... .. ... .
lowQualScore : 7 1111111 3 7 9 44 00 7 44 888888 11 11 11 7 000 11111 22 7 7 99 9 6 7 777777777777777777777777 444 2 7 222222 7 2 7 2 4 8888888888888888 2 4 99 444444 5 66 4 7 4 4 7 7 2 7 7 4 1 7 7 22 7 5 3 2 2 88 0 7 7 7 33 5 2 5 5555555555555555555555555555 5 2 7 4 99 4 99 4 333333333 0 0 77 7 99999 7 99 111111 11 888888 1 333 7 7 88 22222222222222222222222 7 6666666666666666 6666666666666666 4 4 4 4 9999 4444444444 11 4444444444 6666 99 7 1 1 4 4 11 11 3333 0 00 555555 0 0 55 1 11 4 00000000 4 0 1 44 77 3 77 7 77 888888 7 77 44444444444444444444444 888 888 66 888 7
consensus : NNAAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCGGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTTAA--AAA-GAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTAT-GTCAA---TATGTCAT-AA--AA--CTAA-C-AATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGCAA--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGGCACGCGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GGACTCTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGT-A-A-CA-AGAA-ATA--G---------AAAATTGTTGTACGAACT-ATTTT--TATATT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CTAATTGT-A-TAT-TTCATGTTTGTAATTC-ACATAGGT--CAGTA----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACGCTTATTCAT-C-TTGA-G-ATATGCCGACGCGGCTAACG-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCCCACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
Reference ( family-1143 ) : NNAAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCGGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATNT---TTTTTAA--AAA-GAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTAT-G-CAA---T---TCAT--A--AA--CTAA-C-AATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGCAA--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGGCACGCGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GGACTCTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGT-A-A-CA-AGAA-ATA--G---------AAAATTGTTGTACGAACT-ATTTT--TATATT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CTAATTGT-A-TAT-TTCATGTTTGTAATTC-ACATAGGT--CAGTA----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACGCTTATTCAT-C-TTGA-G-ATATGCCGACGCGGCTAACG-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCCCACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
gi|1 : AAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCAGAAGAGATAAGAATTCA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---GTATA----TTTAAAA--AAA-GAAAAC-TTGTGCGAGCCATGTG--GTGCT-AAAAGTGCATTTTAT-GTCAA---TATGTCAT--AAGAA--CTAACC-AATTCGATGATTGTAACGGCAAC-AAATATCATAATATTATTAGAAAT-TACATCAATTGTAAAATCAGTAATGTAGTTGTATGG-GTGTTCTGC-A--------------AAAAATGCAAGTCAAT-GTA--TA------TGTGGGAG-AACTGTTGCT-ACTATTATATCAGAGGCATGTGTTTTATGTTGTCA-TTATTAAGAAGGAAGACTGA--GCCCGGTAGCTATTCATTTTTGCACGGGACTCTCACAATAT-AGTGATTATTCT-TATATAGGGAATGGAAAAGCTGATACAAAGATGACATTTATCGTCGATTTAGAGAAAACCCATGGAAG-AAGAAAT-TGATCACTTACGCA-CAT-TCGGAATAAACAAACGGG-AACATTTGTGTCTTTTAAA-ATG-CGTCTTAA--------------------A--G---------AAAATTGTTGTAT-AACT-ATTTT--TATATT-GCA--TAATTATTTATGTA-------CATGTACAATTAATT-A-CTAA-TGT-A--ATATTCATGGTT
gi|10 : gttttaatccagttcacaatttgacactaaacgctcctggtctgataatatgggatggttgcatgagtgtaactaaatctcatatttgacaaaactctgataaagctatccaagtcatttatacatgatgacgcgatattattgtatgtatcgatttttggcatctggatccgagaacatgatcagtaagaacttaaacaattcataaacgcgaatgaaatacatccgaatattcagcttgacttgcgacaatctaatgcaaaaaacggatttccttgatgtaacgatctcaatagcaaatggattcctttctacagacttgtatcgcaaacctaccgatagacatacgtaccttaataaaacttctaatcaccccgaatccacaaaaaagctattccctttggacttggtctacgtgcgtgtagaatatgtacaacaaaagaaaaatatcagattcaacgaaagaaaatgaaaaataacaaaataaaacgcggttattcatataatgatttagaaaaagaactcatcaaagtagataaactcgacagttctaatctcctaaactacagaaaaaagacgaagcagtataatcgtgttccccttgtagtaaactactccagaggacttcccaatattcataacatttataaaaaatcgacaaaaaattcttgagatttctgaccgcctcCT--A------TTTATTTATTG-ATTTCCCCTATATTTTTGTACCATTAACTTACACGT---TATG------TATTTCATTCCTACGCTTAT--------------A-ATGCCGACGCGGCTAACAATA-----------GCTA-TTGTTTAA-T-TT---CATAGAC----------TTCTTTACTA----------TTT-CAGTAGTT----TTGCGCGTAAATTTTCAACTTGTGGCGTTATTGTTTCAACT-TAGCATTAATCCAACTGGT--GACGTCATA------GTACTTTTAATGTGTTGTAG--TTGTGCGTTTGG-TGGT------TGCTTACGGGAAAATAA-CACGACCTGATGAAG--ACCGGTA--ACGCC--CGTCGAAA-TAATTTTCAA----AGAAACGTG-TTA--GA-GTTTGTTT----------T---TTT---TT---TAT--TT
gi|11 : tCT--A------TTTATTTATTA-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TACACGTATGTATTTCATTC-TACGCTTAT----------------ATGCCGACGCGGCTAACA-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCC-ACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GTTG-TTT----------T---TTT---TT---TAT--TTattttaaggataa
gi|12 : at-ACT-TAATATCAAAGGCACGCGTTGAAT-TTGTCACTTATA-AGAAGAGAGACTAATGACGTTGTAGCTATTCATTTCTACAC-AGATTCTC---GTATAAACAATTTTTCTATA-ATATGT-ATGGAAAA-CTT-GACAAAGAT---ATTTATCGTCGTTTTAAAGAAAATCTAAGGAAGAA---------------TATGTGTCGT-TTGGACTAAACAAACGGG-AACATATTTGCCGTTGAAA-ATAAAGTTCT-GCATGT-------------GT---GTTTTTTTTCAAA----TTGTATAAACTGATTTTACCATGTTAGTA--T-----TG-ATGT---------ATATACAATTAACT-A-CTatttaaggataaactttacatcatctaagttagatttttaatt
gi|13 : gCCGT-TCAGAATAAACAAACGGGTAATATTTTT-TTTTGAAAA-GTAATGTCC-----TGT-A-T-TT-AGAA-ATG--G-----------ATTTTTTGTACGAACT-AATTT--T---TT-CTAAGTAATTATTGACGT---------ATATATAATGAACT-A-CTGGCTGTAA-TGT-TTTATATCAATAAATC-ACATAACC--CAGAA----GTCAACTTCT--T------TGTGAACAT-ATATTTGAT-TGTATTg
gi|14 : A-----------GCTA-TTTTT-GA-T-TTCGTCATAGAC----------T----TAATAAGACATTGACTTTTTAAGTGTTCTTTTTTCGCGCAA--CTTCTACT-ATG------CTATT-C--CTGTA--AC--A---CATTT-TTAAACGT-----------TACT------GTGC-ATAG--TC-----TT--G-CA-AAAAAAATACT-ATGA-TAAATAAAAACAAC-TGAAGTA---ACAAGTA--ACG-T--AGTCGATA-TA--TTTC-A----ACAAA-GTGTTTA--GA-G---------------------TTG---TG---TAT--TTTTAACATTTCGAT-GAAAGAgaatatatacatacacaattagtgattgatgtatcaatttaatatatttaagtgtat
gi|15 : a-ATTTT--TATATT-GTA--TAATCATGTATGTAGTATGTACATGTACAATTAATTTA-CTAATGGT-A-TAT-TTCATGTTTGTAATTC-ACATATAT----ATA-------------T--A------TATATATGT-C-AGTTACT-TATAT-------------------------------------ATTTCATTC-TACGCTTATTCATCC-TTGAGG-ATATGCCGACGCGGC-AACG-TAGCTATTCAAAGGCTA-TTGTT-AA-T-T----CATAGACGAGTTGTAGTTC--TTACTA----------TTTTCAAATGTT----TTGCGcgaaatatatagat
gi|16 : ATTC-TACGCTTAGTAAT-CCTTAATG-ATATGTAGACGGGG-TAAGG-TA-----------GCTA-TTGTT-AA-T-T---------------------TC--ATACTT----------TTGTCAAATGTC----TTGCGGGTAA--TTTCAGCT-ATGACGTTGCTGAT-CAACT-TG--AT--A-CCCATCT-T--GACGTTTCA------GTGCTGT-TAT-CAT-GTAG--TTGTGCATT--G-TG-T------TGCT-ACGG-AAAATAAACATGAC-CAGTAAAA--AC
gi|17 : taatttcgcctttttgtAAGAAGGCTTTTAGAAATACGCCCATATTACAT-GTAGCATTTCGGAAGAG--------------------AGGCATTT--TGGTA--CATA--TAAAAt
gi|18 : taaactacagtaaaaagacgaaacggtgtaatcgcgttccttttctgatataaaggactttccaatggactttccaatattcaaaaaaaaaaaaaatttgagaactttgaccactccAAGAAGGCTTTTAAAAATACGCCCATATTAACATGTAGCATTTCGGAAG------------A-AG------AGGCATTT--TGGTAACTATA--AAAGACgaatttattcaataaaaaaa
gi|2 : aactacgagtaaaaagacgaaacggtgtaatcgcgttccttttctgatataaaggactttccaatggactttccaatattcaaaaaaaaaaattttgagaactttgaccacgtccAAAAATGCTTTCCAAAATATGCCCATATA-----GTAGC-TTTCAGAAGAGATAAGAATTTA-AATATAAAAGACATCT--TGGTA--CATATAAGAAACACAATAAT---CTATTT---TTTTTAA--AAA-GAAAAC-TTGTGCGAGCCATGTATAGTGCTGAAAAGTGCATTTTAT-GTCAA---TATGTCAT--A--AAAACTAA-CCAATTCGAGGATTGTAACAGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGATCTGCAA--------------AAAA-TGCAATAAAATCGTA--TACGTGTATGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGTCACGTGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAT-GGACTCTCACAATATAAGTGATTATCC
gi|21 : gtttatatgggggtgggggggatcctttttgaaaaatctgaaaagctaccagtattttatgtacggtatattgatgacatttttggcatctggaccggaacagaagaagaacttaaacaatttcataaaaccgcaaatgaaatacatccgaatattcagcttgacctgcgccaatctaatacaaaaacggatttccttgatgtaacgatctcaataacagacgggttcctttctacagacttgtattgcaacatatgtaccttgataaaaactctaaccaccccgaatccacaaaaaagctattccctttggacttggtctacgtgcgcgtagaatatgttcaacagaagaaaactatcagattcaacgaaagaaaataaaaaataacttcattatttagataatgactcatcaaagtagataaactcgaccgatcaaatctcttaaactacagaaaaaagacaaagcagtataatcgtgttccccttgtagtaaactattctaaaggacttcccaaaattcataaaattaaaaaaaaaaaaaatcgacaaaaaattcttgagaactctgaccacctc-AAAATAAACACGAC-TGAGGAAG--ACCGGTA--ACG-C--AGTCGAAA-TA--TTTC-A----AGAAA-GCTTTTA--AA------TTT----------T---TTT---TC---AAT--TTTT---ATTCTGAT-AAAAGAGA
gi|22 : tactttaatttatagctaattttactctatt--GATGTCAGT------GT-TTCT-G-TGTGT-GTAGACTTGTG---T--A-TG-T------TGCT-ATAA-TAAATAAACACAAC----TGAAG--ATTGGTA--ACA-T--GGTCAAAT-TA--TTT-------AAAAA-ATGTATAAGGA-GG---TTTATATATATCAT---TTT---TC---TAT--TTTT---agtactccgataaataga
gi|24 : AAATAAACAGAAC-TGCAGAAG--ACTGGTA--ACA-C--AGTCAAAA-TA--TTTT-CTTTTAAAAT-ATGTTTA--G-------TTT----------T---CCT---TT---TATAATTCT---ACTCCGAT-AAAAGAGACTTTGTGT
gi|25 : ttgttat------TGCT-ATGA-TAAATAAAATCGAC---AT-AGGTAACCAGTA--ACG-T--AGACAAAA-TA--TTTC-A----ACAAA-GTGTTTA--GA-AT---TGT----------G---TTT---TTAAACAT--TT---------CGAT-GAAAGatgt
gi|26 : GAAG--ACCGGTATAACGGC--GGTCGAAAATG--TTTC-A----AGAAA-GT--TTA--AG-GT---TTT----------T---TTT---AA---AAA--TTTT---ACTCCGATGGAAAGAGA
gi|27 : AATATCCCCAAA-------GTAGC-TTTAGGAAGAGACAAATATTT---A------AGACATTG--TGATA--CATA--AGAAACAAAATAAT---ATATTT---Ttatatatttgaaata
gi|28 : AATATAAG-GATTAATCTATA-ATAGA--ATGAAAAAGCTT-GACAAAGATGCCATTTATCGTCGATTT----AAAATATATTAAACAACAAAACGTAAACAcaaatcaatatattttgtg
gi|29 : AATTAATT-A-CTGACTGT-AATAT-TTCATGTTTATATTTC-ACATAGGCCGCAGAA----GCCAACTGCTAAA------TGTATGCGT-
gi|3 : ttaAAAAATACTTTCCAAAATATGCCCATC-------GTAGC-TTTTAGAAGAGATAAGAATTTA-AA------AGACGTCT--TGGTA--AATA--AGAGACACAATAATACACCATGTATATTTTTAATTAAA-GAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTAT-G----------------------------------TCAAGGATTGTAACGGCAAC-AAATAT---------ATTAAAAAT-TACATTAATTGTAAATCCAGTAACATAATT-TATGGAGTGTTCTGCAA--------------GAA--TGCAATAAAATCGTA--TG------TGTGGGAAAAACTGGTGTT-ACT-TGATATCAGAGGCATGCGTTAAAT-TTGTCATTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GAACTTTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGAAAGAGCTT-TACAAAGATGGCATGTATCATCGATTTAGGGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCAT-TCGGAATAAACAAACGGG-AACATTATTGTCTTTAAAA-ATG-CGTCTTAACATGTAA-A-CAGAGAATATA--G---------AAAATTGTTGTAC-AACT-ATTTT--TATATT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CGAATTAT-A-TAT-TTCATGTTTGTAATTC-ACATAGGT--CAGTA----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACACTTATTCATCC-TTAAGG-ATATGCTGACGCGGCTAACT-TA-----------GCTC-ATGTT-AA-TAT----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--AT--CACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAT-TA----TC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTATtc
gi|30 : ta--ACTGGTA--ACA-C--GGTCGAAA-TA--TGTC---------AA-GTGTTTA--GAGGT---TTT----------TGGGTTT---TT---TTT--CCTT---A
gi|31 : CGAG-TGGTGAAG--ACCGTTA--AGG-C--GGTCGAAA-TA--TTGG-A----AGAA-------------------------------------TT---TT---AAA--TTTT---ACTCCGAT-TAAAGATACTTTATtatataaaaagcatttac
gi|33 : CGAT-TGGTGAAG--ACTGGCG--ACG-C--TGTCCAAA-TA--TTTC-A----AGAAA-GTGTTTA--CA-GG---ATT----------G---TTTAAAAT---TAT--TTTa
gi|34 : AAAC-TTGTGCAATCCATGTG--GTGCTAAAACGTGTATTTTAT-GTCAA---CATGTCATCAA--AA--CTAA-C-aca
gi|35 : tT-CAACT-TA--AT--ATCC-ACTG-T--GACGTCATACATGTAGTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-T
gi|36 : -ATATGCTAAT-----TAATA-T------------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTGCTA----------TTTT
gi|37 : ttaacattctattTGTTTTGCAA--------------AAAAAT-CAATAGAATCGTATTTA------TGTGGGAAAATGTGATGTG-ACT-TTA
gi|38 : AG--ACCGGTA--ACA-C--AGCTAAAA-TA--TTTC-A----GAAAA-GT-TTTC--AA-GT---TTT----------a
gi|39 : gTTC-GCATAGGT--CAGTACTTAGTCAACTGCT--A------TGTGTT
gi|4 : TTATGCAA--------------AAAA-TGCAATAAAA-CGTA---A------TGTGGGAGAAACTG-TGCT-ACT-TTATATCAGAG-CATGTGTTAAAT-TTGTCACT-ATT-AGAAGAAAGACTGACGACCCGGTAGCTATT-ATTT--GCAC-GGACTCTCACAATATAAGTGATT--TC-ATA-ATAGGG-ATGGAAAAGCTG-TACAAAGATGACATTTATCGTCGATTT-GAGAAAACCTATGGAAAGAAAAAAT--GAACACTTACGCACCATCTCGGAATAAACAAACGGG-AACATTTCTGTCTTTAAAA--TG-CGTCTTAACATGT-A-AACA-AATA-ATATTG---------AAAATTGTTGCAT-AACT-CTTTT--TATATTTGTA--TAATTATGTATGTA-------CATGTATAATTAATT-A-CTAATTAT-A-T----TCATGTTTGTAATTTTACATAGGT--CAGTC----A-CAACTGCT--A-------GTGTTTCT-A-ATTTCCC-TATATTT--GTACCATTA-------C-TACACGTAG-----TATTTCATTC-TACGCTTAT----------------ATGCCGACGCGGCTAACA--A-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TT--CAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGT-ATTGTT-CA-CT-TA--AT--ATCC-ACTG-T--GACGTCATA------GTACTCT-AATGTGT-AT------GTGCTTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACC-GTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---
gi|40 : tattaagtacactatgtttatcgtaggtttgcaatacaagtctgtagctgtaa-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--T
gi|41 : tcaTTATTGTT-CAACT-TA--AT--AT-CCACGG-T--GACG
gi|5 : AAAATGCTTTCCAA--TATGCCCATA-------GTAGC-TTTCAGAAGAGATAAGAAGTTT-AA------AGACATCTTGTGGTA--CATA--AGAAACAT-ATAAT---CTAT-T---TTTTTAA--AAA-GAAAACTTTGTGCGAGCCA-GTG--GTGCTAAAAAGTG-A-TTTAT-GTCAA---TATGTCATAAA--AA--CTAC-C-AATTCGA-GATTGTAACGGCAACAAAATATCA------TATTAAAAAT-TATATT-ATTGTA---TCAGTAATGTAGTT-TATGGAGTGTT-TGC-A--------------AAAAATGCAAT-AAATCGTT--TA------TGTGGGAGAAACTGGTGC--ACT-
gi|6 : cagacttgtattgcaaacctacgataaacatagtgtacttaataaaaactctaaccacccgaatccacaaaaaaagctattccctttggacttggtctacgttgcgcgtagaatatgtttcaacagaagaaaactatcagattcaacaaagaaaataaaaaataacttaagaaaacgcggttatttagataatgatatagaaaaagaactcatcaaagtagataaatcgaccgatcaaatctcctaaactcagaaaaagacgaagcagtctatcgtgttcccttgtagtaaactattctaaaggacttccaaatattcaaaattttaaaaaatcgacaaaaaattcttgagaactctgaccgcctcT-TCGGAATAAACAAACGGG-AACAATTT-GTCTTTAAGACATGACGTCTTAACATGT-AGA-CACAGAAGATA--A---------AAGAT-GTTGTACGAACTGAATTT--TATATT-GTA--TAATGACGTGTGTA-------ATTGTACAATTCATT-AGTTAAT-GT-AATGT-TTCATGTTTGTAATTC-GCATAGGT--CAGTA----GTCAACTGCT--ACATGTATGTGTTCAT-A-ATTACTC-CATATATT-GTAACATTA-------A-T---TATA------TATTTCATTC-TATGCTTATTCAT-CGTTGA-GGATATGCTGACGGGGCTAA-G-TAA----------GCTAATTGTT-AAAT-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACAATACTGTT-CAATT-CA--AT--AT-CCATTG-T--GACGTCACA------GTACTCT-AATGTAT-GTAG--TCGTGCGTT--GTTGTT------TGCT-ACGG-AAAATAAACACGAC-TAATCAAG--ACAGCT---ACG-CAAGATCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--
gi|7 : AATATGCCCATA-------GCAGC-TTTCAGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTT--------TTAAAC-TTGTGTGAGCCATGTG--GTGCTAAAAAGTGCATTTTAT-GTCAA---TATGTCAT--A--AAAACTAA-CCAATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGC-A--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGCGCT-ACT-TT-----AGAGGCATGTGTTAAAT-TTGTCACTTATT-AGA------------------------ATTCATTTTTGCAC-GGACTCTCACAA------TGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGG--GGGAAAAAT-TGAACACTTACGCACCAT-TCGGAA
gi|8 : AGAAATGCTTTTAAAAATATGCCCATAGTACAT-GTAGCATTTTAAAAG--------ACTTAGAG------AGACATGT--TAGTA--CATA--TAAAATACTATGAC---CTAT-T---TTTTTAG--AAACGAAAAT-CTTTGCTCGTCATGTG--TTGTTTCAAATTA-ATTTTATGG-CAATGTT---CCATGAA--AG--CTAATC-AATTCGAAGACTGTAATGGTAAC-AAATATCC------TG-TAAAAATATATATAAATTGTACATCCAGTAATGT------------TGTTTTGCAACCAAAAAAAAAAATAAAAATGTAACAGAATCGTA--TA------TGTATGAGAAACT----TTAACT-TTATATCAAATGCCTGTGTTGAAT-TTATCACTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAATATCGGGAGATCGGAACAAATCATGTGTTGAAAAATCTTAATAGCTACCATTATTATATGTACTATGTATTGATGACTCTTTTGGAATATGTACCGGAACAGAATAACGTAAACAATTTTATACATTCCTTGACCTGCGACAATTTAATACCAAAACAGGTTTCCTTGATATAACGAACTCAATAGCGGGTGGATCCTTTTCCACTTAATTATATTGCAAACCTACCGATAAACATACACATCTTAATAAAAGCTCTGACCAACCCGAATTGACAAAACACTATTCGCTTTGGACTTGGTGTATGTGCCTGTAGAATATGTTCAATAGAAGAAAAATACCAGCTTCAACGAAAGACAATAAAAAACAACGT
Unaligned ( gi|19 ): ACGCGGTTATTTAGATAATGATATACTGTAGAAAAAGAACTCATCAAAGTAGATAAACTCGACTGATCAAATCTCCTAAACTACAGAAAAAAGACGAAGCAGTATAATCGTGTTCCCCTTGTAGTAAACTACTTTAAAGGACTTCCCAATATTCATAAA
Unaligned ( gi|20 ): TGTTTATATGGGGGGATGGGAAAAAATCCTTTTTGAAAAATCTGAAAAGCTACCAGTATTTTATGTACGGTATATTGATGACATGTTTGGCATCTGGACCGGAACTGAAGAAGAACTTAAACCGCGAATGAAATACATCCGAATATTC
Unaligned ( gi|23 ): GTTTACATGGGGGTATGGGGGAATGGGTACAAATCCTTTCTGAAAATCTGCTAATATTTTATGTACAATATTTTGATGACATTTATTGCATCTAGACCGCCACAGAGGAACTTAAACA
Unaligned ( gi|32 ): TAAAAGCTCGAACCACCCCGAATCCATCAAAAAAAAAAAAAAAACCTATTCCCTTTGGACTTGGTCTACGTGCGTG
Alignments
lowQualScore : 4444444 1 1111111 111 111 1 1 111 111111 2222222222222222 111111 1 8888888888888888888888888888 1 1 1 222222222 11111 111111 111111 111 44444444444444444444444 7777777777777777 2222222222222222 1111 1111111111 1111111111 1111 1111 111111 11111111 11111111111111111111111
lowQualScore : 0 6666666 3 0 1 22 22 0 4 5555555 66 66 66 1 000 5 000 1 99 5 77 3 6 0 7 5 1 666 5 6 999999 6 3 6 3 3 9999999999999999 6 0 66 444444 4 44 4 0 1 1 5 6 5 1 6 1 0 1 6 99 6 1 7 4 3 99 1 0 5 6 88 5 3 2 2222222222222222222222222222 3 3 7 1 77 1 77 1 444444444 5 5 33 5 11111 5 77 555555 66 222222 1 222 5 1 99 99999999999999999999999 5 4444444444444444 6666666666666666 4 4 4 4 3333 9999999999 66 9999999999 0000 77 5 0 0 4 4 66 66 6666 4 55 111111 4 4 55 0 66 4 77777777 4 4 3 33 33 5 33 2 33 555555 2 33 99999999999999999999999 555 555 44 777 5
lowQualScore : . ....... . . . .. .. . . ....... .. .. .. . ... . ... . .. . .. . . . . . . ... . . ...... . . . . . ................ . . .. ...... . .. . . . . . . . . . . . . . .. . . . . . .. . . . . .. . . . ............................ . . . . .. . .. . ......... . . .. . ..... . .. ...... .. ...... . ... . . .. ....................... . ................ ................ . . . . .... .......... .. .......... .... .. . . . . . .. .. .... . .. ...... . . .. . .. . ........ . . . .. .. . .. . .. ...... . .. ....................... ... ... .. ... .
lowQualScore : 7 1111111 3 7 9 44 00 7 4 2222222 11 11 11 7 000 0 000 7 22 7 99 9 6 1 1 7 4 444 2 7 222222 7 2 7 2 4 8888888888888888 2 4 99 444444 5 66 4 7 4 4 7 7 2 7 7 4 1 7 7 22 7 5 3 2 2 88 0 7 7 7 33 5 2 5 5555555555555555555555555555 5 2 7 4 99 4 99 4 333333333 0 0 77 7 99999 7 99 111111 11 888888 1 333 7 7 88 22222222222222222222222 7 6666666666666666 6666666666666666 4 4 4 4 9999 4444444444 11 4444444444 6666 99 7 1 1 4 4 11 11 3333 0 00 555555 0 0 55 1 11 4 00000000 4 0 1 44 77 3 77 7 77 888888 7 77 44444444444444444444444 888 888 66 888 7
consensus : NNAAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCGGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTTAA--AAAGAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAATATGTCAT-AA-AA-CTAA-C-AATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGCAA--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGGCACGCGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GGACTCTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGT-A-A-CA-AGAA-ATA--G---------AAAATTGTTGTACGAACT-ATTTT--TATATT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CTAATTGT-A-TAT-TTCATGTTTGTAATTC-ACATAGGT--CAGTA----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACGCTTATTCAT-C-TTGA-G-ATATGCCGACGCGGCTAACG-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCCCACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
Reference ( family-1143 ) : NNAAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCGGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTTAA--AAAGAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAATATGTCAT-AA-AA-CTAA-C-AATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGCAA--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGGCACGCGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GGACTCTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGT-A-A-CA-AGAA-ATA--G---------AAAATTGTTGTACGAACT-ATTTT--TATATT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CTAATTGT-A-TAT-TTCATGTTTGTAATTC-ACATAGGT--CAGTA----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACGCTTATTCAT-C-TTGA-G-ATATGCCGACGCGGCTAACG-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCCCACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
gi|1 : AAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCAGAAGAGATAAGAATTCA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---GTA-TA---TTTAAAA--AAAGAAAAC-TTGTGCGAGCCATGTG--GTGCT-AAAAGTGCATTTTATGTCAATATGTCAT-AAGAA-CTAACC-AATTCGATGATTGTAACGGCAAC-AAATATCATAATATTATTAGAAAT-TACATCAATTGTAAAATCAGTAATGTAGTTGTATGG-GTGTTCTGC-A--------------AAAAATGCAAGTCAAT-GTA--TA------TGTGGGAG-AACTGTTGCT-ACTATTATATCAGAGGCATGTGTTTTATGTTGTCA-TTATTAAGAAGGAAGACTGA--GCCCGGTAGCTATTCATTTTTGCACGGGACTCTCACAATAT-AGTGATTATTCT-TATATAGGGAATGGAAAAGCTGATACAAAGATGACATTTATCGTCGATTTAGAGAAAACCCATGGAAG-AAGAAAT-TGATCACTTACGCA-CAT-TCGGAATAAACAAACGGG-AACATTTGTGTCTTTTAAA-ATG-CGTCTTAA--------------------A--G---------AAAATTGTTGTAT-AACT-ATTTT--TATATT-GCA--TAATTATTTATGTA-------CATGTACAATTAATT-A-CTAA-TGT-A--ATATTCATGGTT
gi|10 : gttttaatccagttcacaatttgacactaaacgctcctggtctgataatatgggatggttgcatgagtgtaactaaatctcatatttgacaaaactctgataaagctatccaagtcatttatacatgatgacgcgatattattgtatgtatcgatttttggcatctggatccgagaacatgatcagtaagaacttaaacaattcataaacgcgaatgaaatacatccgaatattcagcttgacttgcgacaatctaatgcaaaaaacggatttccttgatgtaacgatctcaatagcaaatggattcctttctacagacttgtatcgcaaacctaccgatagacatacgtaccttaataaaacttctaatcaccccgaatccacaaaaaagctattccctttggacttggtctacgtgcgtgtagaatatgtacaacaaaagaaaaatatcagattcaacgaaagaaaatgaaaaataacaaaataaaacgcggttattcatataatgatttagaaaaagaactcatcaaagtagataaactcgacagttctaatctcctaaactacagaaaaaagacgaagcagtataatcgtgttccccttgtagtaaactactccagaggacttcccaatattcataacatttataaaaaatcgacaaaaaattcttgagatttctgaccgcctcCT--A------TTTATTTATTG-ATTTCCCCTATATTTTTGTACCATTAACTTACACGT---TATG------TATTTCATTCCTACGCTTAT--------------A-ATGCCGACGCGGCTAACAATA-----------GCTA-TTGTTTAA-T-TT---CATAGAC----------TTCTTTACTA----------TTT-CAGTAGTT----TTGCGCGTAAATTTTCAACTTGTGGCGTTATTGTTTCAACT-TAGCATTAATCCAACTGGT--GACGTCATA------GTACTTTTAATGTGTTGTAG--TTGTGCGTTTGG-TGGT------TGCTTACGGGAAAATAA-CACGACCTGATGAAG--ACCGGTA--ACGCC--CGTCGAAA-TAATTTTCAA----AGAAACGTG-TTA--GA-GTTTGTTT----------T---TTT---TT---TAT--TT
gi|11 : tCT--A------TTTATTTATTA-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TACACGTATGTATTTCATTC-TACGCTTAT----------------ATGCCGACGCGGCTAACA-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCC-ACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GTTG-TTT----------T---TTT---TT---TAT--TTattttaaggataa
gi|12 : at-ACT-TAATATCAAAGGCACGCGTTGAAT-TTGTCACTTATA-AGAAGAGAGACTAATGACGTTGTAGCTATTCATTTCTACAC-AGATTCTC---GTATAAACAATTTTTCTATA-ATATGT-ATGGAAAA-CTT-GACAAAGAT---ATTTATCGTCGTTTTAAAGAAAATCTAAGGAAGAA---------------TATGTGTCGT-TTGGACTAAACAAACGGG-AACATATTTGCCGTTGAAA-ATAAAGTTCT-GCATGT-------------GT---GTTTTTTTTCAAA----TTGTATAAACTGATTTTACCATGTTAGTA--T-----TG-ATGT---------ATATACAATTAACT-A-CTatttaaggataaactttacatcatctaagttagatttttaatt
gi|13 : gCCGT-TCAGAATAAACAAACGGGTAATATTTTT-TTTTGAAAA-GTAATGTCC-----TGT-A-T-TT-AGAA-ATG--G-----------ATTTTTTGTACGAACT-AATTT--T---TT-CTAAGTAATTATTGACGT---------ATATATAATGAACT-A-CTGGCTGTAA-TGT-TTTATATCAATAAATC-ACATAACC--CAGAA----GTCAACTTCT--T------TGTGAACAT-ATATTTGAT-TGTATTg
gi|14 : A-----------GCTA-TTTTT-GA-T-TTCGTCATAGAC----------T----TAATAAGACATTGACTTTTTAAGTGTTCTTTTTTCGCGCAA--CTTCTACT-ATG------CTATT-C--CTGTA--AC--A---CATTT-TTAAACGT-----------TACT------GTGC-ATAG--TC-----TT--G-CA-AAAAAAATACT-ATGA-TAAATAAAAACAAC-TGAAGTA---ACAAGTA--ACG-T--AGTCGATA-TA--TTTC-A----ACAAA-GTGTTTA--GA-G---------------------TTG---TG---TAT--TTTTAACATTTCGAT-GAAAGAgaatatatacatacacaattagtgattgatgtatcaatttaatatatttaagtgtat
gi|15 : a-ATTTT--TATATT-GTA--TAATCATGTATGTAGTATGTACATGTACAATTAATTTA-CTAATGGT-A-TAT-TTCATGTTTGTAATTC-ACATATAT----ATA-------------T--A------TATATATGT-C-AGTTACT-TATAT-------------------------------------ATTTCATTC-TACGCTTATTCATCC-TTGAGG-ATATGCCGACGCGGC-AACG-TAGCTATTCAAAGGCTA-TTGTT-AA-T-T----CATAGACGAGTTGTAGTTC--TTACTA----------TTTTCAAATGTT----TTGCGcgaaatatatagat
gi|16 : ATTC-TACGCTTAGTAAT-CCTTAATG-ATATGTAGACGGGG-TAAGG-TA-----------GCTA-TTGTT-AA-T-T---------------------TC--ATACTT----------TTGTCAAATGTC----TTGCGGGTAA--TTTCAGCT-ATGACGTTGCTGAT-CAACT-TG--AT--A-CCCATCT-T--GACGTTTCA------GTGCTGT-TAT-CAT-GTAG--TTGTGCATT--G-TG-T------TGCT-ACGG-AAAATAAACATGAC-CAGTAAAA--AC
gi|17 : taatttcgcctttttgtAAGAAGGCTTTTAGAAATACGCCCATATTACAT-GTAGCATTTCGGAAGAG--------------------AGGCATTT--TGGTA--CATA--TAAAAt
gi|18 : taaactacagtaaaaagacgaaacggtgtaatcgcgttccttttctgatataaaggactttccaatggactttccaatattcaaaaaaaaaaaaaatttgagaactttgaccactccAAGAAGGCTTTTAAAAATACGCCCATATTAACATGTAGCATTTCGGAAG------------A-AG------AGGCATTT--TGGTAACTATA--AAAGACgaatttattcaataaaaaaa
gi|2 : aactacgagtaaaaagacgaaacggtgtaatcgcgttccttttctgatataaaggactttccaatggactttccaatattcaaaaaaaaaaattttgagaactttgaccacgtccAAAAATGCTTTCCAAAATATGCCCATATA-----GTAGC-TTTCAGAAGAGATAAGAATTTA-AATATAAAAGACATCT--TGGTA--CATATAAGAAACACAATAAT---CTATTT---TTTTTAA--AAAGAAAAC-TTGTGCGAGCCATGTATAGTGCTGAAAAGTGCATTTTATGTCAATATGTCAT-AA-AAACTAA-CCAATTCGAGGATTGTAACAGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGATCTGCAA--------------AAAA-TGCAATAAAATCGTA--TACGTGTATGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGTCACGTGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAT-GGACTCTCACAATATAAGTGATTATCC
gi|21 : gtttatatgggggtgggggggatcctttttgaaaaatctgaaaagctaccagtattttatgtacggtatattgatgacatttttggcatctggaccggaacagaagaagaacttaaacaatttcataaaaccgcaaatgaaatacatccgaatattcagcttgacctgcgccaatctaatacaaaaacggatttccttgatgtaacgatctcaataacagacgggttcctttctacagacttgtattgcaacatatgtaccttgataaaaactctaaccaccccgaatccacaaaaaagctattccctttggacttggtctacgtgcgcgtagaatatgttcaacagaagaaaactatcagattcaacgaaagaaaataaaaaataacttcattatttagataatgactcatcaaagtagataaactcgaccgatcaaatctcttaaactacagaaaaaagacaaagcagtataatcgtgttccccttgtagtaaactattctaaaggacttcccaaaattcataaaattaaaaaaaaaaaaaatcgacaaaaaattcttgagaactctgaccacctc-AAAATAAACACGAC-TGAGGAAG--ACCGGTA--ACG-C--AGTCGAAA-TA--TTTC-A----AGAAA-GCTTTTA--AA------TTT----------T---TTT---TC---AAT--TTTT---ATTCTGAT-AAAAGAGA
gi|22 : tactttaatttatagctaattttactctatt--GATGTCAGT------GT-TTCT-G-TGTGT-GTAGACTTGTG---T--A-TG-T------TGCT-ATAA-TAAATAAACACAAC----TGAAG--ATTGGTA--ACA-T--GGTCAAAT-TA--TTT-------AAAAA-ATGTATAAGGA-GG---TTTATATATATCAT---TTT---TC---TAT--TTTT---agtactccgataaataga
gi|24 : AAATAAACAGAAC-TGCAGAAG--ACTGGTA--ACA-C--AGTCAAAA-TA--TTTT-CTTTTAAAAT-ATGTTTA--G-------TTT----------T---CCT---TT---TATAATTCT---ACTCCGAT-AAAAGAGACTTTGTGT
gi|25 : ttgttat------TGCT-ATGA-TAAATAAAATCGAC---AT-AGGTAACCAGTA--ACG-T--AGACAAAA-TA--TTTC-A----ACAAA-GTGTTTA--GA-AT---TGT----------G---TTT---TTAAACAT--TT---------CGAT-GAAAGatgt
gi|26 : GAAG--ACCGGTATAACGGC--GGTCGAAAATG--TTTC-A----AGAAA-GT--TTA--AG-GT---TTT----------T---TTT---AA---AAA--TTTT---ACTCCGATGGAAAGAGA
gi|27 : AATATCCCCAAA-------GTAGC-TTTAGGAAGAGACAAATATTTA-A--------GACATTG--TGATA--CATA--AGAAACAAAATAAT---ATATTT---Ttatatatttgaaata
gi|28 : AATATAAG-GATTAATCTATA-ATAGA--ATGAAAAAGCTT-GACAAAGATGCCATTTATCGTCGATTT----AAAATATATTAAACAACAAAACGTAAACAcaaatcaatatattttgtg
gi|29 : AATTAATT-A-CTGACTGT-AATAT-TTCATGTTTATATTTC-ACATAGGCCGCAGAA----GCCAACTGCTAAA------TGTATGCGT-
gi|3 : ttaAAAAATACTTTCCAAAATATGCCCATC-------GTAGC-TTTTAGAAGAGATAAGAATTTA-AA------AGACGTCT--TGGTA--AATA--AGAGACACAATAATACACCATGTATATTTTTAATTAAAGAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAA-----------------------------GGATTGTAACGGCAAC-AAATAT---------ATTAAAAAT-TACATTAATTGTAAATCCAGTAACATAATT-TATGGAGTGTTCTGCAA--------------GAA--TGCAATAAAATCGTA--TG------TGTGGGAAAAACTGGTGTT-ACT-TGATATCAGAGGCATGCGTTAAAT-TTGTCATTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GAACTTTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGAAAGAGCTT-TACAAAGATGGCATGTATCATCGATTTAGGGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCAT-TCGGAATAAACAAACGGG-AACATTATTGTCTTTAAAA-ATG-CGTCTTAACATGTAA-A-CAGAGAATATA--G---------AAAATTGTTGTAC-AACT-ATTTT--TATATT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CGAATTAT-A-TAT-TTCATGTTTGTAATTC-ACATAGGT--CAGTA----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACACTTATTCATCC-TTAAGG-ATATGCTGACGCGGCTAACT-TA-----------GCTC-ATGTT-AA-TAT----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--AT--CACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAT-TA----TC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTATtc
gi|30 : ta--ACTGGTA--ACA-C--GGTCGAAA-TA--TGTC---------AA-GTGTTTA--GAGGT---TTT----------TGGGTTT---TT---TTT--CCTT---A
gi|31 : CGAG-TGGTGAAG--ACCGTTA--AGG-C--GGTCGAAA-TA--TTGG-A----AGAA-------------------------------------TT---TT---AAA--TTTT---ACTCCGAT-TAAAGATACTTTATtatataaaaagcatttac
gi|33 : CGAT-TGGTGAAG--ACTGGCG--ACG-C--TGTCCAAA-TA--TTTC-A----AGAAA-GTGTTTA--CA-GG---ATT----------G---TTTAAAAT---TAT--TTTa
gi|34 : AAAC-TTGTGCAATCCATGTG--GTGCTAAAACGTGTATTTTATGTCAACATGTCATCAA-AA-CTAA-C-aca
gi|35 : tT-CAACT-TA--AT--ATCC-ACTG-T--GACGTCATACATGTAGTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-T
gi|36 : -ATATGCTAAT-----TAATA-T------------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTGCTA----------TTTT
gi|37 : ttaacattctattTGTTTTGCAA--------------AAAAAT-CAATAGAATCGTATTTA------TGTGGGAAAATGTGATGTG-ACT-TTA
gi|38 : AG--ACCGGTA--ACA-C--AGCTAAAA-TA--TTTC-A----GAAAA-GT-TTTC--AA-GT---TTT----------a
gi|39 : gTTC-GCATAGGT--CAGTACTTAGTCAACTGCT--A------TGTGTT
gi|4 : TTATGCAA--------------AAAA-TGCAATAAAA-CGTA---A------TGTGGGAGAAACTG-TGCT-ACT-TTATATCAGAG-CATGTGTTAAAT-TTGTCACT-ATT-AGAAGAAAGACTGACGACCCGGTAGCTATT-ATTT--GCAC-GGACTCTCACAATATAAGTGATT--TC-ATA-ATAGGG-ATGGAAAAGCTG-TACAAAGATGACATTTATCGTCGATTT-GAGAAAACCTATGGAAAGAAAAAAT--GAACACTTACGCACCATCTCGGAATAAACAAACGGG-AACATTTCTGTCTTTAAAA--TG-CGTCTTAACATGT-A-AACA-AATA-ATATTG---------AAAATTGTTGCAT-AACT-CTTTT--TATATTTGTA--TAATTATGTATGTA-------CATGTATAATTAATT-A-CTAATTAT-A-T----TCATGTTTGTAATTTTACATAGGT--CAGTC----A-CAACTGCT--A-------GTGTTTCT-A-ATTTCCC-TATATTT--GTACCATTA-------C-TACACGTAG-----TATTTCATTC-TACGCTTAT----------------ATGCCGACGCGGCTAACA--A-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TT--CAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGT-ATTGTT-CA-CT-TA--AT--ATCC-ACTG-T--GACGTCATA------GTACTCT-AATGTGT-AT------GTGCTTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACC-GTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---
gi|40 : tattaagtacactatgtttatcgtaggtttgcaatacaagtctgtagctgtaa-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--T
gi|41 : tcaTTATTGTT-CAACT-TA--AT--AT-CCACGG-T--GACG
gi|5 : AAAATGCTTTCCAA--TATGCCCATA-------GTAGC-TTTCAGAAGAGATAAGAAGTTT-AA------AGACATCTTGTGGTA--CATA--AGAAACAT-ATAAT---CTA-TT---TTTTTAA--AAAGAAAACTTTGTGCGAGCCA-GTG--GTGCTAAAAAGTG-A-TTTATGTCAATATGTCATAAA-AA-CTAC-C-AATTCGA-GATTGTAACGGCAACAAAATATCA------TATTAAAAAT-TATATT-ATTGTA---TCAGTAATGTAGTT-TATGGAGTGTT-TGC-A--------------AAAAATGCAAT-AAATCGTT--TA------TGTGGGAGAAACTGGTGC--ACT-
gi|6 : cagacttgtattgcaaacctacgataaacatagtgtacttaataaaaactctaaccacccgaatccacaaaaaaagctattccctttggacttggtctacgttgcgcgtagaatatgtttcaacagaagaaaactatcagattcaacaaagaaaataaaaaataacttaagaaaacgcggttatttagataatgatatagaaaaagaactcatcaaagtagataaatcgaccgatcaaatctcctaaactcagaaaaagacgaagcagtctatcgtgttcccttgtagtaaactattctaaaggacttccaaatattcaaaattttaaaaaatcgacaaaaaattcttgagaactctgaccgcctcT-TCGGAATAAACAAACGGG-AACAATTT-GTCTTTAAGACATGACGTCTTAACATGT-AGA-CACAGAAGATA--A---------AAGAT-GTTGTACGAACTGAATTT--TATATT-GTA--TAATGACGTGTGTA-------ATTGTACAATTCATT-AGTTAAT-GT-AATGT-TTCATGTTTGTAATTC-GCATAGGT--CAGTA----GTCAACTGCT--ACATGTATGTGTTCAT-A-ATTACTC-CATATATT-GTAACATTA-------A-T---TATA------TATTTCATTC-TATGCTTATTCAT-CGTTGA-GGATATGCTGACGGGGCTAA-G-TAA----------GCTAATTGTT-AAAT-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACAATACTGTT-CAATT-CA--AT--AT-CCATTG-T--GACGTCACA------GTACTCT-AATGTAT-GTAG--TCGTGCGTT--GTTGTT------TGCT-ACGG-AAAATAAACACGAC-TAATCAAG--ACAGCT---ACG-CAAGATCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--
gi|7 : AATATGCCCATA-------GCAGC-TTTCAGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTT-------TTAAAC-TTGTGTGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAATATGTCAT-AA-AAACTAA-CCAATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGC-A--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGCGCT-ACT-TT-----AGAGGCATGTGTTAAAT-TTGTCACTTATT-AGA------------------------ATTCATTTTTGCAC-GGACTCTCACAA------TGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGG--GGGAAAAAT-TGAACACTTACGCACCAT-TCGGAA
gi|8 : AGAAATGCTTTTAAAAATATGCCCATAGTACAT-GTAGCATTTTAAAAG--------ACTTAGAG------AGACATGT--TAGTA--CATA--TAAAATACTATGAC---CTATTT---TTTTAGA--AACGAAAAT-CTTTGCTCGTCATGTG--TTGTTTCAAATTA-ATTTTATGGCAATGTTCCATGAA-AG-CTAATC-AATTCGAAGACTGTAATGGTAAC-AAATATCC------TG-TAAAAATATATATAAATTGTACATCCAGTAATGT------------TGTTTTGCAACCAAAAAAAAAAATAAAAATGTAACAGAATCGTA--TA------TGTATGAGAAACT----TTAACT-TTATATCAAATGCCTGTGTTGAAT-TTATCACTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAATATCGGGAGATCGGAACAAATCATGTGTTGAAAAATCTTAATAGCTACCATTATTATATGTACTATGTATTGATGACTCTTTTGGAATATGTACCGGAACAGAATAACGTAAACAATTTTATACATTCCTTGACCTGCGACAATTTAATACCAAAACAGGTTTCCTTGATATAACGAACTCAATAGCGGGTGGATCCTTTTCCACTTAATTATATTGCAAACCTACCGATAAACATACACATCTTAATAAAAGCTCTGACCAACCCGAATTGACAAAACACTATTCGCTTTGGACTTGGTGTATGTGCCTGTAGAATATGTTCAATAGAAGAAAAATACCAGCTTCAACGAAAGACAATAAAAAACAACGT
Unaligned ( gi|19 ): ACGCGGTTATTTAGATAATGATATACTGTAGAAAAAGAACTCATCAAAGTAGATAAACTCGACTGATCAAATCTCCTAAACTACAGAAAAAAGACGAAGCAGTATAATCGTGTTCCCCTTGTAGTAAACTACTTTAAAGGACTTCCCAATATTCATAAA
Unaligned ( gi|20 ): TGTTTATATGGGGGGATGGGAAAAAATCCTTTTTGAAAAATCTGAAAAGCTACCAGTATTTTATGTACGGTATATTGATGACATGTTTGGCATCTGGACCGGAACTGAAGAAGAACTTAAACCGCGAATGAAATACATCCGAATATTC
Unaligned ( gi|23 ): GTTTACATGGGGGTATGGGGGAATGGGTACAAATCCTTTCTGAAAATCTGCTAATATTTTATGTACAATATTTTGATGACATTTATTGCATCTAGACCGCCACAGAGGAACTTAAACA
Unaligned ( gi|32 ): TAAAAGCTCGAACCACCCCGAATCCATCAAAAAAAAAAAAAAAACCTATTCCCTTTGGACTTGGTCTACGTGCGTG
Alignments
lowQualScore : 4444444 1 1111111 111 111 1 1 111 111111 2222222222222222 111111 1 8888888888888888888888888888 1 1 1 222222222 11111 111111 111111 111 44444444444444444444444 7777777777777777 2222222222222222 1111 1111111111 1111111111 1111 1111 111111 11111111 11111111111111111111111
lowQualScore : 0 6666666 3 0 1 22 22 0 4 5555555 66 66 66 1 000 5 000 1 99 5 77 3 6 0 7 5 1 666 5 6 999999 6 3 6 3 3 9999999999999999 6 0 66 444444 4 44 4 0 1 1 5 6 5 1 6 1 0 1 6 99 6 1 7 4 3 99 1 0 5 6 88 5 3 2 2222222222222222222222222222 3 3 7 1 77 1 77 1 444444444 5 5 33 5 11111 5 77 555555 66 222222 1 222 5 1 99 99999999999999999999999 5 4444444444444444 6666666666666666 4 4 4 4 3333 9999999999 66 9999999999 0000 77 5 0 0 4 4 66 66 6666 4 55 111111 4 4 55 0 66 4 77777777 4 4 3 33 33 5 33 2 33 555555 2 33 99999999999999999999999 555 555 44 777 5
lowQualScore : . ....... . . . .. .. . . ....... .. .. .. . ... . ... . .. . .. . . . . . . ... . . ...... . . . . . ................ . . .. ...... . .. . . . . . . . . . . . . . .. . . . . . .. . . . . .. . . . ............................ . . . . .. . .. . ......... . . .. . ..... . .. ...... .. ...... . ... . . .. ....................... . ................ ................ . . . . .... .......... .. .......... .... .. . . . . . .. .. .... . .. ...... . . .. . .. . ........ . . . .. .. . .. . .. ...... . .. ....................... ... ... .. ... .
lowQualScore : 7 1111111 3 7 9 44 00 7 4 2222222 11 11 11 7 000 0 000 7 22 7 99 9 6 1 1 7 4 444 2 7 222222 7 2 7 2 4 8888888888888888 2 4 99 444444 5 66 4 7 4 4 7 7 2 7 7 4 1 7 7 22 7 5 3 2 2 88 0 7 7 7 33 5 2 5 5555555555555555555555555555 5 2 7 4 99 4 99 4 333333333 0 0 77 7 99999 7 99 111111 11 888888 1 333 7 7 88 22222222222222222222222 7 6666666666666666 6666666666666666 4 4 4 4 9999 4444444444 11 4444444444 6666 99 7 1 1 4 4 11 11 3333 0 00 555555 0 0 55 1 11 4 00000000 4 0 1 44 77 3 77 7 77 888888 7 77 44444444444444444444444 888 888 66 888 7
consensus : NNAAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCGGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTTAA--AAAGAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAATATGTCAT-AA-AA-CTAA-C-AATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGCAA--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGGCACGCGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GGACTCTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGT-A-A-CA-AGAA-ATA--G---------AAAATTGTTGTACGAACT-ATTTT--TATATT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CTAATTGT-A-TAT-TTCATGTTTGTAATTC-ACATAGGT--CAGTA----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACGCTTATTCAT-C-TTGA-G-ATATGCCGACGCGGCTAACG-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCCCACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
Reference ( family-1143 ) : NNAAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCGGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTTAA--AAAGAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAATATGTCAT-AA-AA-CTAA-C-AATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGCAA--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGGCACGCGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GGACTCTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGT-A-A-CA-AGAA-ATA--G---------AAAATTGTTGTACGAACT-ATTTT--TATATT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CTAATTGT-A-TAT-TTCATGTTTGTAATTC-ACATAGGT--CAGTA----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACGCTTATTCAT-C-TTGA-G-ATATGCCGACGCGGCTAACG-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCCCACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
gi|1 : AAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCAGAAGAGATAAGAATTCA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---GTA-TA---TTTAAAA--AAAGAAAAC-TTGTGCGAGCCATGTG--GTGCT-AAAAGTGCATTTTATGTCAATATGTCAT-AAGAA-CTAACC-AATTCGATGATTGTAACGGCAAC-AAATATCATAATATTATTAGAAAT-TACATCAATTGTAAAATCAGTAATGTAGTTGTATGG-GTGTTCTGC-A--------------AAAAATGCAAGTCAAT-GTA--TA------TGTGGGAG-AACTGTTGCT-ACTATTATATCAGAGGCATGTGTTTTATGTTGTCA-TTATTAAGAAGGAAGACTGA--GCCCGGTAGCTATTCATTTTTGCACGGGACTCTCACAATAT-AGTGATTATTCT-TATATAGGGAATGGAAAAGCTGATACAAAGATGACATTTATCGTCGATTTAGAGAAAACCCATGGAAG-AAGAAAT-TGATCACTTACGCA-CAT-TCGGAATAAACAAACGGG-AACATTTGTGTCTTTTAAA-ATG-CGTCTTAA--------------------A--G---------AAAATTGTTGTAT-AACT-ATTTT--TATATT-GCA--TAATTATTTATGTA-------CATGTACAATTAATT-A-CTAA-TGT-A--ATATTCATGGTT
gi|10 : gttttaatccagttcacaatttgacactaaacgctcctggtctgataatatgggatggttgcatgagtgtaactaaatctcatatttgacaaaactctgataaagctatccaagtcatttatacatgatgacgcgatattattgtatgtatcgatttttggcatctggatccgagaacatgatcagtaagaacttaaacaattcataaacgcgaatgaaatacatccgaatattcagcttgacttgcgacaatctaatgcaaaaaacggatttccttgatgtaacgatctcaatagcaaatggattcctttctacagacttgtatcgcaaacctaccgatagacatacgtaccttaataaaacttctaatcaccccgaatccacaaaaaagctattccctttggacttggtctacgtgcgtgtagaatatgtacaacaaaagaaaaatatcagattcaacgaaagaaaatgaaaaataacaaaataaaacgcggttattcatataatgatttagaaaaagaactcatcaaagtagataaactcgacagttctaatctcctaaactacagaaaaaagacgaagcagtataatcgtgttccccttgtagtaaactactccagaggacttcccaatattcataacatttataaaaaatcgacaaaaaattcttgagatttctgaccgcctcCT--A------TTTATTTATTG-ATTTCCCCTATATTTTTGTACCATTAACTTACACGT---TATG------TATTTCATTCCTACGCTTAT--------------A-ATGCCGACGCGGCTAACAATA-----------GCTA-TTGTTTAA-T-TT---CATAGAC----------TTCTTTACTA----------TTT-CAGTAGTT----TTGCGCGTAAATTTTCAACTTGTGGCGTTATTGTTTCAACT-TAGCATTAATCCAACTGGT--GACGTCATA------GTACTTTTAATGTGTTGTAG--TTGTGCGTTTGG-TGGT------TGCTTACGGGAAAATAA-CACGACCTGATGAAG--ACCGGTA--ACGCC--CGTCGAAA-TAATTTTCAA----AGAAACGTG-TTA--GA-GTTTGTTT----------T---TTT---TT---TAT--TT
gi|11 : tCT--A------TTTATTTATTA-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TACACGTATGTATTTCATTC-TACGCTTAT----------------ATGCCGACGCGGCTAACA-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCC-ACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GTTG-TTT----------T---TTT---TT---TAT--TTattttaaggataa
gi|12 : at-ACT-TAATATCAAAGGCACGCGTTGAAT-TTGTCACTTATA-AGAAGAGAGACTAATGACGTTGTAGCTATTCATTTCTACAC-AGATTCTC---GTATAAACAATTTTTCTATA-ATATGT-ATGGAAAA-CTT-GACAAAGAT---ATTTATCGTCGTTTTAAAGAAAATCTAAGGAAGAA---------------TATGTGTCGT-TTGGACTAAACAAACGGG-AACATATTTGCCGTTGAAA-ATAAAGTTCT-GCATGT-------------GT---GTTTTTTTTCAAA----TTGTATAAACTGATTTTACCATGTTAGTA--T-----TG-ATGT---------ATATACAATTAACT-A-CTatttaaggataaactttacatcatctaagttagatttttaatt
gi|13 : gCCGT-TCAGAATAAACAAACGGGTAATATTTTT-TTTTGAAAA-GTAATGTCC-----TGT-A-T-TT-AGAA-ATG--G-----------ATTTTTTGTACGAACT-AATTT--T---TT-CTAAGTAATTATTGACGT---------ATATATAATGAACT-A-CTGGCTGTAA-TGT-TTTATATCAATAAATC-ACATAACC--CAGAA----GTCAACTTCT--T------TGTGAACAT-ATATTTGAT-TGTATTg
gi|14 : A-----------GCTA-TTTTT-GA-T-TTCGTCATAGAC----------T----TAATAAGACATTGACTTTTTAAGTGTTCTTTTTTCGCGCAA--CTTCTACT-ATG------CTATT-C--CTGTA--AC--A---CATTT-TTAAACGT-----------TACT------GTGC-ATAG--TC-----TT--G-CA-AAAAAAATACT-ATGA-TAAATAAAAACAAC-TGAAGTA---ACAAGTA--ACG-T--AGTCGATA-TA--TTTC-A----ACAAA-GTGTTTA--GA-G---------------------TTG---TG---TAT--TTTTAACATTTCGAT-GAAAGAgaatatatacatacacaattagtgattgatgtatcaatttaatatatttaagtgtat
gi|15 : a-ATTTT--TATATT-GTA--TAATCATGTATGTAGTATGTACATGTACAATTAATTTA-CTAATGGT-A-TAT-TTCATGTTTGTAATTC-ACATATAT----ATA-------------T--A------TATATATGT-C-AGTTACT-TATAT-------------------------------------ATTTCATTC-TACGCTTATTCATCC-TTGAGG-ATATGCCGACGCGGC-AACG-TAGCTATTCAAAGGCTA-TTGTT-AA-T-T----CATAGACGAGTTGTAGTTC--TTACTA----------TTTTCAAATGTT----TTGCGcgaaatatatagat
gi|16 : ATTC-TACGCTTAGTAAT-CCTTAATG-ATATGTAGACGGGG-TAAGG-TA-----------GCTA-TTGTT-AA-T-T---------------------TC--ATACTT----------TTGTCAAATGTC----TTGCGGGTAA--TTTCAGCT-ATGACGTTGCTGAT-CAACT-TG--AT--A-CCCATCT-T--GACGTTTCA------GTGCTGT-TAT-CAT-GTAG--TTGTGCATT--G-TG-T------TGCT-ACGG-AAAATAAACATGAC-CAGTAAAA--AC
gi|17 : taatttcgcctttttgtAAGAAGGCTTTTAGAAATACGCCCATATTACAT-GTAGCATTTCGGAAGAG--------------------AGGCATTT--TGGTA--CATA--TAAAAt
gi|18 : taaactacagtaaaaagacgaaacggtgtaatcgcgttccttttctgatataaaggactttccaatggactttccaatattcaaaaaaaaaaaaaatttgagaactttgaccactccAAGAAGGCTTTTAAAAATACGCCCATATTAACATGTAGCATTTCGGAAG------------A-AG------AGGCATTT--TGGTAACTATA--AAAGACgaatttattcaataaaaaaa
gi|2 : aactacgagtaaaaagacgaaacggtgtaatcgcgttccttttctgatataaaggactttccaatggactttccaatattcaaaaaaaaaaattttgagaactttgaccacgtccAAAAATGCTTTCCAAAATATGCCCATATA-----GTAGC-TTTCAGAAGAGATAAGAATTTA-AATATAAAAGACATCT--TGGTA--CATATAAGAAACACAATAAT---CTATTT---TTTTTAA--AAAGAAAAC-TTGTGCGAGCCATGTATAGTGCTGAAAAGTGCATTTTATGTCAATATGTCAT-AA-AAACTAA-CCAATTCGAGGATTGTAACAGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGATCTGCAA--------------AAAA-TGCAATAAAATCGTA--TACGTGTATGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGTCACGTGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAT-GGACTCTCACAATATAAGTGATTATCC
gi|21 : gtttatatgggggtgggggggatcctttttgaaaaatctgaaaagctaccagtattttatgtacggtatattgatgacatttttggcatctggaccggaacagaagaagaacttaaacaatttcataaaaccgcaaatgaaatacatccgaatattcagcttgacctgcgccaatctaatacaaaaacggatttccttgatgtaacgatctcaataacagacgggttcctttctacagacttgtattgcaacatatgtaccttgataaaaactctaaccaccccgaatccacaaaaaagctattccctttggacttggtctacgtgcgcgtagaatatgttcaacagaagaaaactatcagattcaacgaaagaaaataaaaaataacttcattatttagataatgactcatcaaagtagataaactcgaccgatcaaatctcttaaactacagaaaaaagacaaagcagtataatcgtgttccccttgtagtaaactattctaaaggacttcccaaaattcataaaattaaaaaaaaaaaaaatcgacaaaaaattcttgagaactctgaccacctc-AAAATAAACACGAC-TGAGGAAG--ACCGGTA--ACG-C--AGTCGAAA-TA--TTTC-A----AGAAA-GCTTTTA--AA------TTT----------T---TTT---TC---AAT--TTTT---ATTCTGAT-AAAAGAGA
gi|22 : tactttaatttatagctaattttactctatt--GATGTCAGT------GT-TTCT-G-TGTGT-GTAGACTTGTG---T--A-TG-T------TGCT-ATAA-TAAATAAACACAAC----TGAAG--ATTGGTA--ACA-T--GGTCAAAT-TA--TTT-------AAAAA-ATGTATAAGGA-GG---TTTATATATATCAT---TTT---TC---TAT--TTTT---agtactccgataaataga
gi|24 : AAATAAACAGAAC-TGCAGAAG--ACTGGTA--ACA-C--AGTCAAAA-TA--TTTT-CTTTTAAAAT-ATGTTTA--G-------TTT----------T---CCT---TT---TATAATTCT---ACTCCGAT-AAAAGAGACTTTGTGT
gi|25 : ttgttat------TGCT-ATGA-TAAATAAAATCGAC---AT-AGGTAACCAGTA--ACG-T--AGACAAAA-TA--TTTC-A----ACAAA-GTGTTTA--GA-AT---TGT----------G---TTT---TTAAACAT--TT---------CGAT-GAAAGatgt
gi|26 : GAAG--ACCGGTATAACGGC--GGTCGAAAATG--TTTC-A----AGAAA-GT--TTA--AG-GT---TTT----------T---TTT---AA---AAA--TTTT---ACTCCGATGGAAAGAGA
gi|27 : AATATCCCCAAA-------GTAGC-TTTAGGAAGAGACAAATATTTA-A--------GACATTG--TGATA--CATA--AGAAACAAAATAAT---ATATTT---Ttatatatttgaaata
gi|28 : AATATAAG-GATTAATCTATA-ATAGA--ATGAAAAAGCTT-GACAAAGATGCCATTTATCGTCGATTT----AAAATATATTAAACAACAAAACGTAAACAcaaatcaatatattttgtg
gi|29 : AATTAATT-A-CTGACTGT-AATAT-TTCATGTTTATATTTC-ACATAGGCCGCAGAA----GCCAACTGCTAAA------TGTATGCGT-
gi|3 : ttaAAAAATACTTTCCAAAATATGCCCATC-------GTAGC-TTTTAGAAGAGATAAGAATTTA-AA------AGACGTCT--TGGTA--AATA--AGAGACACAATAATACACCATGTATATTTTTAATTAAAGAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAA-----------------------------GGATTGTAACGGCAAC-AAATAT---------ATTAAAAAT-TACATTAATTGTAAATCCAGTAACATAATT-TATGGAGTGTTCTGCAA--------------GAA--TGCAATAAAATCGTA--TG------TGTGGGAAAAACTGGTGTT-ACT-TGATATCAGAGGCATGCGTTAAAT-TTGTCATTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GAACTTTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGAAAGAGCTT-TACAAAGATGGCATGTATCATCGATTTAGGGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCAT-TCGGAATAAACAAACGGG-AACATTATTGTCTTTAAAA-ATG-CGTCTTAACATGTAA-A-CAGAGAATATA--G---------AAAATTGTTGTAC-AACT-ATTTT--TATATT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CGAATTAT-A-TAT-TTCATGTTTGTAATTC-ACATAGGT--CAGTA----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACACTTATTCATCC-TTAAGG-ATATGCTGACGCGGCTAACT-TA-----------GCTC-ATGTT-AA-TAT----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--AT--CACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAT-TA----TC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTATtc
gi|30 : ta--ACTGGTA--ACA-C--GGTCGAAA-TA--TGTC---------AA-GTGTTTA--GAGGT---TTT----------TGGGTTT---TT---TTT--CCTT---A
gi|31 : CGAG-TGGTGAAG--ACCGTTA--AGG-C--GGTCGAAA-TA--TTGG-A----AGAA-------------------------------------TT---TT---AAA--TTTT---ACTCCGAT-TAAAGATACTTTATtatataaaaagcatttac
gi|33 : CGAT-TGGTGAAG--ACTGGCG--ACG-C--TGTCCAAA-TA--TTTC-A----AGAAA-GTGTTTA--CA-GG---ATT----------G---TTTAAAAT---TAT--TTTa
gi|34 : AAAC-TTGTGCAATCCATGTG--GTGCTAAAACGTGTATTTTATGTCAACATGTCATCAA-AA-CTAA-C-aca
gi|35 : tT-CAACT-TA--AT--ATCC-ACTG-T--GACGTCATACATGTAGTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-T
gi|36 : -ATATGCTAAT-----TAATA-T------------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTGCTA----------TTTT
gi|37 : ttaacattctattTGTTTTGCAA--------------AAAAAT-CAATAGAATCGTATTTA------TGTGGGAAAATGTGATGTG-ACT-TTA
gi|38 : AG--ACCGGTA--ACA-C--AGCTAAAA-TA--TTTC-A----GAAAA-GT-TTTC--AA-GT---TTT----------a
gi|39 : gTTC-GCATAGGT--CAGTACTTAGTCAACTGCT--A------TGTGTT
gi|4 : TTATGCAA--------------AAAA-TGCAATAAAA-CGTA---A------TGTGGGAGAAACTG-TGCT-ACT-TTATATCAGAG-CATGTGTTAAAT-TTGTCACT-ATT-AGAAGAAAGACTGACGACCCGGTAGCTATT-ATTT--GCAC-GGACTCTCACAATATAAGTGATT--TC-ATA-ATAGGG-ATGGAAAAGCTG-TACAAAGATGACATTTATCGTCGATTT-GAGAAAACCTATGGAAAGAAAAAAT--GAACACTTACGCACCATCTCGGAATAAACAAACGGG-AACATTTCTGTCTTTAAAA--TG-CGTCTTAACATGT-A-AACA-AATA-ATATTG---------AAAATTGTTGCAT-AACT-CTTTT--TATATTTGTA--TAATTATGTATGTA-------CATGTATAATTAATT-A-CTAATTAT-A-T----TCATGTTTGTAATTTTACATAGGT--CAGTC----A-CAACTGCT--A-------GTGTTTCT-A-ATTTCCC-TATATTT--GTACCATTA-------C-TACACGTAG-----TATTTCATTC-TACGCTTAT----------------ATGCCGACGCGGCTAACA--A-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TT--CAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGT-ATTGTT-CA-CT-TA--AT--ATCC-ACTG-T--GACGTCATA------GTACTCT-AATGTGT-AT------GTGCTTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACC-GTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---
gi|40 : tattaagtacactatgtttatcgtaggtttgcaatacaagtctgtagctgtaa-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--T
gi|41 : tcaTTATTGTT-CAACT-TA--AT--AT-CCACGG-T--GACG
gi|5 : AAAATGCTTTCCAA--TATGCCCATA-------GTAGC-TTTCAGAAGAGATAAGAAGTTT-AA------AGACATCTTGTGGTA--CATA--AGAAACAT-ATAAT---CTA-TT---TTTTTAA--AAAGAAAACTTTGTGCGAGCCA-GTG--GTGCTAAAAAGTG-A-TTTATGTCAATATGTCATAAA-AA-CTAC-C-AATTCGA-GATTGTAACGGCAACAAAATATCA------TATTAAAAAT-TATATT-ATTGTA---TCAGTAATGTAGTT-TATGGAGTGTT-TGC-A--------------AAAAATGCAAT-AAATCGTT--TA------TGTGGGAGAAACTGGTGC--ACT-
gi|6 : cagacttgtattgcaaacctacgataaacatagtgtacttaataaaaactctaaccacccgaatccacaaaaaaagctattccctttggacttggtctacgttgcgcgtagaatatgtttcaacagaagaaaactatcagattcaacaaagaaaataaaaaataacttaagaaaacgcggttatttagataatgatatagaaaaagaactcatcaaagtagataaatcgaccgatcaaatctcctaaactcagaaaaagacgaagcagtctatcgtgttcccttgtagtaaactattctaaaggacttccaaatattcaaaattttaaaaaatcgacaaaaaattcttgagaactctgaccgcctcT-TCGGAATAAACAAACGGG-AACAATTT-GTCTTTAAGACATGACGTCTTAACATGT-AGA-CACAGAAGATA--A---------AAGAT-GTTGTACGAACTGAATTT--TATATT-GTA--TAATGACGTGTGTA-------ATTGTACAATTCATT-AGTTAAT-GT-AATGT-TTCATGTTTGTAATTC-GCATAGGT--CAGTA----GTCAACTGCT--ACATGTATGTGTTCAT-A-ATTACTC-CATATATT-GTAACATTA-------A-T---TATA------TATTTCATTC-TATGCTTATTCAT-CGTTGA-GGATATGCTGACGGGGCTAA-G-TAA----------GCTAATTGTT-AAAT-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACAATACTGTT-CAATT-CA--AT--AT-CCATTG-T--GACGTCACA------GTACTCT-AATGTAT-GTAG--TCGTGCGTT--GTTGTT------TGCT-ACGG-AAAATAAACACGAC-TAATCAAG--ACAGCT---ACG-CAAGATCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--
gi|7 : AATATGCCCATA-------GCAGC-TTTCAGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTT-------TTAAAC-TTGTGTGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAATATGTCAT-AA-AAACTAA-CCAATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGC-A--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGCGCT-ACT-TT-----AGAGGCATGTGTTAAAT-TTGTCACTTATT-AGA------------------------ATTCATTTTTGCAC-GGACTCTCACAA------TGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGG--GGGAAAAAT-TGAACACTTACGCACCAT-TCGGAA
gi|8 : AGAAATGCTTTTAAAAATATGCCCATAGTACAT-GTAGCATTTTAAAAG--------ACTTAGAG------AGACATGT--TAGTA--CATA--TAAAATACTATGAC---CTATTT---TTTTAGA--AACGAAAAT-CTTTGCTCGTCATGTG--TTGTTTCAAATTA-ATTTTATGGCAATGTTCCATGAA-AG-CTAATC-AATTCGAAGACTGTAATGGTAAC-AAATATCC------TG-TAAAAATATATATAAATTGTACATCCAGTAATGT------------TGTTTTGCAACCAAAAAAAAAAATAAAAATGTAACAGAATCGTA--TA------TGTATGAGAAACT----TTAACT-TTATATCAAATGCCTGTGTTGAAT-TTATCACTT
blockSeqs : TTAACAT A A AT GA G ATATAAA TG AC TA A ACA T ATA A TT T TA G C C . A CC G A . A A . A C AACCAAAAAAAAAAAT A TT CGTGTA G TA . C C . . T C . A T . T . C A A C GT T C T CA A A C AAACAGAGAATATAG T T A G AC A AG G AGTATGTAC T G CT A ATAT T CG CTTAGT AA CATGTA A TA . T T CTTACACGTATG . TCATCCTTGAGGAT CGTAGCTATTCAAAG A . A A TCGT GAGTTGTAGT . AGACATTGAC CTTT . . . G . . TCC . TA CATGTA . . AC . T AAAAAAA . . . TA TA G AA A . CTTTT . AG GGTTTATATATATCAT AAA AAA AA . G
blockSeqs : TTACAT A A AC AT . G . . . A . T . A . . . A C A . A CC G . . . A . A C AA A . . G T . C T . . C T . A A . G . G A A A T C . . A A A C AAACAAATAATATTG A T G G . T . T AC . . TG . ATGT . . GC . . A AT . T T CTACACGTAG . TAATCCTTAATGAT CATA . . . . . . . . . . . . . . . CCC . . . . . . . . TT . . . . . . . . . A . . GGTTTTTGGG . . . . .
blockSeqs : GTACAT A A AT GA . A . . . A . T . A . . . A T G . . TC G . . . A . A T AA A . . A T . T C . . C T . A A . G . A A A A T C . . G A A C AGACACAGAAGATAA A T G . . . . T AC . . CT . TGT . . GT . . G C . T T CTTATA . TCATCCTTAAGGAT GGTA . . . . . . . . . . . . . . . TCC . . . . . . . . T . . . . . . . . . A . . GTTGTTTT . . . . .
blockSeqs : TA . A AT GA . A . . . A . T . G . . . A C . . . C A . . . C . A A AA A . . G G . T T . . C T . A A . G . A . G A . C . . A . . C GTGTTTTTTTTC A . . . . . . T AA . . TT . TAT . . GT . . G A . T . ATTATA . TCATCGTTGAGGAT CTTA . . . . . . . . . . . . . . . TCC . . . . . . . . T . . . . . . . . . A . . ATTGTG . . . . .
blockSeqs : . . A AT GA . A . . . T . T . . . . . A . . . . C . . . . . . . C AA . . . G T . T T . . . . . A A . . . . . G . . C . . . . . . ATTTAGAAATGG . . . . . . . T . . . TT . TAT . . A . . G A . A . . . . GTAA . . . . . . . . . . . . . . . TCC . . . . . . . . T . . . . . . . . . A . . GTTTTT . . . . .
blockSeqs : . . A . . . G . . . . . . . . . T . . . . . T A . . . . T . T T . . . . . . . . . . . . T . T . . . . . C A . . . . TAT . . . . . . . . . . . . . . . TCC . . . . . . . . T . . . . . . . . . A . . GTTTTT . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . . A CAA . . . . . . . . . . . . . TC . . . . . . . . T . . . . . . . . . A . . GGATTG . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . A . . TTTT . . . .
blockSeqs : . . . . . . . . . . . . . . A . . TTTT . . .
blockSeqs : . . . . . . . . A . . G . . .
blockSeqs : . . . . . . . A . . . . . .
blockSeqs : . . . . . . . A . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : .
blockSeqCons : ****** AA************** G* AAACANAGAATATAG************* TT A** T* CTTATA***************** TCATCCTTGAGGAT** NNTA************ **** ** ** ** ** TCC* ** T******* ** A***** GTTTTT***************** ***
originalCons : NNAAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCGGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTTAA--AAAGAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAATATGTCAT-AA-AA-CTAA-C-AATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGCAA--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGGCACGCGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GGACTCTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGT-A-A-CA-AGAA-ATA--G---------AAAATTGTTGTACGAACT-ATTTT--TATATT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CTAATTGT-A-TAT-TTCATGTTTGTAATTC-ACATAGGT--CAGTA----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACGCTTATTCAT-C-TTGA-G-ATATGCCGACGCGGCTAACG-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCCCACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
finalCons : NNAAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCGGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTTAA--AAAGAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAATATGTCAT-AA-AA-CTAA-C-AATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGCAA--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGGCACGCGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GGACTCTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGTAAACANAGAATATAG-------------AAAATTGTTGTACGAACT-ATTTT--TATATT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CTAATTGT-A-TAT-TTCATGTTTGTAATTC-ACATAGGT--CAGTA----GTCAACTGCT--A------TGTGTTCGTA--ATTTCCC-TATATTTT-GTACCATTACTTATA-----------------TATTTCATTC-TACGCTTATTCATCCTTGAGGAT--ATGCCGACGCGGCTAANNTA------------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCC-ACTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TGT-------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTCA-----AGAAA-GTGTTTA--GAGTTTTT-----------------TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAATATCGGGAGATCGGAACAAATCATGTGTTGAAAAATCTTAATAGCTACCATTATTATATGTACTATGTATTGATGACTCTTTTGGAATATGTACCGGAACAGAATAACGTAAACAATTTTATACATTCCTTGACCTGCGACAATTTAATACCAAAACAGGTTTCCTTGATATAACGAACTCAATAGCGGGTGGATCCTTTTCCACTTAATTATATTGCAAACCTACCGATAAACATACACATCTTAATAAAAGCTCTGACCAACCCGAATTGACAAAACACTATTCGCTTTGGACTTGGTGTATGTGCCTGTAGAATATGTTCAATAGAAGAAAAATACCAGCTTCAACGAAAGACAATAAAAAACAACGT
Unaligned ( gi|19 ): ACGCGGTTATTTAGATAATGATATACTGTAGAAAAAGAACTCATCAAAGTAGATAAACTCGACTGATCAAATCTCCTAAACTACAGAAAAAAGACGAAGCAGTATAATCGTGTTCCCCTTGTAGTAAACTACTTTAAAGGACTTCCCAATATTCATAAA
Unaligned ( gi|20 ): TGTTTATATGGGGGGATGGGAAAAAATCCTTTTTGAAAAATCTGAAAAGCTACCAGTATTTTATGTACGGTATATTGATGACATGTTTGGCATCTGGACCGGAACTGAAGAAGAACTTAAACCGCGAATGAAATACATCCGAATATTC
Unaligned ( gi|23 ): GTTTACATGGGGGTATGGGGGAATGGGTACAAATCCTTTCTGAAAATCTGCTAATATTTTATGTACAATATTTTGATGACATTTATTGCATCTAGACCGCCACAGAGGAACTTAAACA
Unaligned ( gi|32 ): TAAAAGCTCGAACCACCCCGAATCCATCAAAAAAAAAAAAAAAACCTATTCCCTTTGGACTTGGTCTACGTGCGTG
Alignments
lowQualScore : 4444444 1 1111111 111 111 1 1 111 111111 2222222222222222 111111 1 22222222222 1 1 222222222 11 11111 111111 111 44444444444444444444444 333333333333 2222222222222222 1111 1111111111 1111111111 1111 111111 11111111 11111111111111111111111
lowQualScore : 0 6666666 3 0 1 22 22 0 4 5555555 66 66 66 1 000 5 000 1 99 5 77 3 6 0 7 5 1 666 5 6 999999 6 3 6 3 3 9999999999999999 6 0 66 444444 4 44 4 0 1 1 5 6 5 1 6 1 0 1 6 99 6 1 7 4 3 99 1 0 5 6 88 5 3 2 66666666666 2 3 3 7 1 77 5 5 77 1 444444444 5 5 33 5 66 5 5 77 5 66666 66 222222 1 222 5 1 6 99999999999999999999999 5 444444444444 0 4444444444444444 4 4 4 4 3333 9999999999 66 9999999999 0000 77 5 0 3 4 1 4 66 66 4 4 55 111111 4 4 55 0 66 4 77777777 4 4 3 33 33 5 33 2 33 555555 2 33 99999999999999999999999 555 555 44 777 5
lowQualScore : . ....... . . . .. .. . . ....... .. .. .. . ... . ... . .. . .. . . . . . . ... . . ...... . . . . . ................ . . .. ...... . .. . . . . . . . . . . . . . .. . . . . . .. . . . . .. . . . ........... . . . . . .. . . .. . ......... . . .. . .. . . .. . ..... .. ...... . ... . . . ....................... . ............ . ................ . . . . .... .......... .. .......... .... .. . . . . . . .. .. . . .. ...... . . .. . .. . ........ . . . .. .. . .. . .. ...... . .. ....................... ... ... .. ... .
lowQualScore : 7 1111111 3 7 9 44 00 7 4 2222222 11 11 11 7 000 0 000 7 22 7 99 9 6 1 1 7 4 444 2 7 222222 7 2 7 2 4 8888888888888888 2 4 99 444444 5 66 4 7 4 4 7 7 2 7 7 4 1 7 7 22 7 5 3 2 2 88 0 7 7 7 33 5 2 5 33333333333 2 2 2 7 4 99 7 7 99 4 333333333 0 0 77 7 44 7 7 99 7 44444 11 888888 1 333 7 7 7 22222222222222222222222 7 444444444444 1 9999999999999999 4 4 4 4 9999 4444444444 11 4444444444 6666 99 7 1 4 4 9 4 11 11 4 0 00 555555 0 0 55 1 11 4 00000000 4 0 1 44 77 3 77 7 77 888888 7 77 44444444444444444444444 888 888 66 888 7
consensus : NNAAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCGGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTTAA--AAAGAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAATATGTCAT-AA-AA-CTAA-C-AATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGCAA--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGGCACGCGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GGACTCTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGTA-ACANAGAATATNGAAAATTGTTGTACGAACT-ATTTT--TATA-TT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CTAATTGT-A-TAT-TTCATGTTTGTAA-TTCACATAGGT--CAGT-A----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACGCTTATTCATCCTTGAGGATATGCCGACGCGGCTAACG-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCCA-CTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
Reference ( family-1143 ) : NNAAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCGGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTTAA--AAAGAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAATATGTCAT-AA-AA-CTAA-C-AATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGCAA--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGGCACGCGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GGACTCTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCGT-TCGGAATAAACAAACGGG-AACATTTTTGTCTTTAAAA-ATGACGTCTTAACATGTAAACANAGAATATAGAAAATTGTTGTACGAACT-ATTTT--TATA-TT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CTAATTGT-A-TAT-TTCATGTTTGTAA-TTCACATAGGT--CAGT-A----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACGCTTATTCATCCTTGAGGATATGCCGACGCGGCTAANN-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCCA-CTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTGT
gi|1 : AAAAATGCTTTCCAAAATATGCCCATA-------GTAGC-TTTCAGAAGAGATAAGAATTCA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---GTA-TA---TTTAAAA--AAAGAAAAC-TTGTGCGAGCCATGTG--GTGCT-AAAAGTGCATTTTATGTCAATATGTCAT-AAGAA-CTAACC-AATTCGATGATTGTAACGGCAAC-AAATATCATAATATTATTAGAAAT-TACATCAATTGTAAAATCAGTAATGTAGTTGTATGG-GTGTTCTGC-A--------------AAAAATGCAAGTCAAT-GTA--TA------TGTGGGAG-AACTGTTGCT-ACTATTATATCAGAGGCATGTGTTTTATGTTGTCA-TTATTAAGAAGGAAGACTGA--GCCCGGTAGCTATTCATTTTTGCACGGGACTCTCACAATAT-AGTGATTATTCT-TATATAGGGAATGGAAAAGCTGATACAAAGATGACATTTATCGTCGATTTAGAGAAAACCCATGGAAG-AAGAAAT-TGATCACTTACGCA-CAT-TCGGAATAAACAAACGGG-AACATTTGTGTCTTTTAAA-ATG-CGTCTTAA------------------AGAAAATTGTTGTAT-AACT-ATTTT--TATA-TT-GCA--TAATTATTTATGTA-------CATGTACAATTAATT-A-CTAA-TGT-A--ATATTCATGGTT
gi|10 : gttttaatccagttcacaatttgacactaaacgctcctggtctgataatatgggatggttgcatgagtgtaactaaatctcatatttgacaaaactctgataaagctatccaagtcatttatacatgatgacgcgatattattgtatgtatcgatttttggcatctggatccgagaacatgatcagtaagaacttaaacaattcataaacgcgaatgaaatacatccgaatattcagcttgacttgcgacaatctaatgcaaaaaacggatttccttgatgtaacgatctcaatagcaaatggattcctttctacagacttgtatcgcaaacctaccgatagacatacgtaccttaataaaacttctaatcaccccgaatccacaaaaaagctattccctttggacttggtctacgtgcgtgtagaatatgtacaacaaaagaaaaatatcagattcaacgaaagaaaatgaaaaataacaaaataaaacgcggttattcatataatgatttagaaaaagaactcatcaaagtagataaactcgacagttctaatctcctaaactacagaaaaaagacgaagcagtataatcgtgttccccttgtagtaaactactccagaggacttcccaatattcataacatttataaaaaatcgacaaaaaattcttgagatttctgaccgcctcCT--A------TTTATTTATTG-ATTTCCCCTATATTTTTGTACCATTAACTTACACGT---TATG------TATTTCATTCCTACGCTTAT------------A-ATGCCGACGCGGCTAACAATA-----------GCTA-TTGTTTAA-T-TT---CATAGAC----------TTCTTTACTA----------TTT-CAGTAGTT----TTGCGCGTAAATTTTCAACTTGTGGCGTTATTGTTTCAACT-TAGCATTAATCCAACTGGT--GACGTCATA------GTACTTTTAATGTGTTGTAG--TTGTGCGTTTGG-TGGT------TGCTTACGGGAAAATAA-CACGACCTGATGAAG--ACCGGTA--ACGCC--CGTCGAAA-TAATTTTCAA----AGAAACGTG-TTA--GA-GTTTGTTT----------T---TTT---TT---TAT--TT
gi|11 : tCT--A------TTTATTTATTA-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TACACGTATGTATTTCATTC-TACGCTTAT--------------ATGCCGACGCGGCTAACA-TA-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--ATCCA-CTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GTTG-TTT----------T---TTT---TT---TAT--TTattttaaggataa
gi|12 : at-ACT-TAATATCAAAGGCACGCGTTGAAT-TTGTCACTTATA-AGAAGAGAGACTAATGACGTTGTAGCTATTCATTTCTACAC-AGATTCTC---GTATAAACAATTTTTCTATA-ATATGT-ATGGAAAA-CTT-GACAAAGAT---ATTTATCGTCGTTTTAAAGAAAATCTAAGGAAGAA---------------TATGTGTCGT-TTGGACTAAACAAACGGG-AACATATTTGCCGTTGAAA-ATAAAGTTCT-GCATGTGTGTTT----TTTTTCAAA---TTGTATAAACTGATTTTACCATG-TTAGTA--T-----TG-ATGT---------ATATACAATTAACT-A-CTatttaaggataaactttacatcatctaagttagatttttaatt
gi|13 : gCCGT-TCAGAATAAACAAACGGGTAATATTTTT-TTTTGAAAA-GTAATGTCC-----TGT--ATTTAGAA-ATGG--ATTTTTTGTACGAACT-AATTT--T----TT-CTAAGTAATTATTGACGT---------ATATATAATGAACT-A-CTGGCTGTAA-TGT-TTTATATCAATAA-ATCACATAACC--CAGA-A----GTCAACTTCT--T------TGTGAACAT-ATATTTGAT-TGTATTg
gi|14 : A-----------GCTA-TTTTT-GA-T-TTCGTCATAGAC----------T----TAATAAGACATTGACTTTTTAAGTGTTCTTTTTTCGCGCAA--CTTCTACT-ATG------CTATT-C--CTGTA--AC--A--CA-TTT-TTAAACGT-----------TACT------GTGC-ATAG--TC-----TT--G-CA-AAAAAAATACT-ATGA-TAAATAAAAACAAC-TGAAGTA---ACAAGTA--ACG-T--AGTCGATA-TA--TTTC-A----ACAAA-GTGTTTA--GA-G---------------------TTG---TG---TAT--TTTTAACATTTCGAT-GAAAGAgaatatatacatacacaattagtgattgatgtatcaatttaatatatttaagtgtat
gi|15 : a-ATTTT--TATA-TT-GTA--TAATCATGTATGTAGTATGTACATGTACAATTAATTTA-CTAATGGT-A-TAT-TTCATGTTTGTAA-TTCACATATAT----AT-A-------------T--A------TATATATGT-C-AGTTACT-TATAT-------------------------------------ATTTCATTC-TACGCTTATTCATCCTTGAGGATATGCCGACGCGGC-AACG-TAGCTATTCAAAGGCTA-TTGTT-AA-T-T----CATAGACGAGTTGTAGTTC--TTACTA----------TTTTCAAATGTT----TTGCGcgaaatatatagat
gi|16 : ATTC-TACGCTTAGTAATCCTTAATGATATGTAGACGGGG-TAAGG-TA-----------GCTA-TTGTT-AA-T-T---------------------TC--ATACTT----------TTGTCAAATGTC----TTGCGGGTAA--TTTCAGCT-ATGACGTTGCTGAT-CAACT-TG--AT--ACCCA-TCT-T--GACGTTTCA------GTGCTGT-TAT-CAT-GTAG--TTGTGCATT--G-TG-T------TGCT-ACGG-AAAATAAACATGAC-CAGTAAAA--AC
gi|17 : taatttcgcctttttgtAAGAAGGCTTTTAGAAATACGCCCATATTACAT-GTAGCATTTCGGAAGAG--------------------AGGCATTT--TGGTA--CATA--TAAAAt
gi|18 : taaactacagtaaaaagacgaaacggtgtaatcgcgttccttttctgatataaaggactttccaatggactttccaatattcaaaaaaaaaaaaaatttgagaactttgaccactccAAGAAGGCTTTTAAAAATACGCCCATATTAACATGTAGCATTTCGGAAG------------A-AG------AGGCATTT--TGGTAACTATA--AAAGACgaatttattcaataaaaaaa
gi|2 : aactacgagtaaaaagacgaaacggtgtaatcgcgttccttttctgatataaaggactttccaatggactttccaatattcaaaaaaaaaaattttgagaactttgaccacgtccAAAAATGCTTTCCAAAATATGCCCATATA-----GTAGC-TTTCAGAAGAGATAAGAATTTA-AATATAAAAGACATCT--TGGTA--CATATAAGAAACACAATAAT---CTATTT---TTTTTAA--AAAGAAAAC-TTGTGCGAGCCATGTATAGTGCTGAAAAGTGCATTTTATGTCAATATGTCAT-AA-AAACTAA-CCAATTCGAGGATTGTAACAGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGATCTGCAA--------------AAAA-TGCAATAAAATCGTA--TACGTGTATGTGGGAGAAACTGGTGCT-ACT-TTATATCAGAGTCACGTGTTAAAT-TTGTCACTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAT-GGACTCTCACAATATAAGTGATTATCC
gi|21 : gtttatatgggggtgggggggatcctttttgaaaaatctgaaaagctaccagtattttatgtacggtatattgatgacatttttggcatctggaccggaacagaagaagaacttaaacaatttcataaaaccgcaaatgaaatacatccgaatattcagcttgacctgcgccaatctaatacaaaaacggatttccttgatgtaacgatctcaataacagacgggttcctttctacagacttgtattgcaacatatgtaccttgataaaaactctaaccaccccgaatccacaaaaaagctattccctttggacttggtctacgtgcgcgtagaatatgttcaacagaagaaaactatcagattcaacgaaagaaaataaaaaataacttcattatttagataatgactcatcaaagtagataaactcgaccgatcaaatctcttaaactacagaaaaaagacaaagcagtataatcgtgttccccttgtagtaaactattctaaaggacttcccaaaattcataaaattaaaaaaaaaaaaaatcgacaaaaaattcttgagaactctgaccacctc-AAAATAAACACGAC-TGAGGAAG--ACCGGTA--ACG-C--AGTCGAAA-TA--TTTC-A----AGAAA-GCTTTTA--AA------TTT----------T---TTT---TC---AAT--TTTT---ATTCTGAT-AAAAGAGA
gi|22 : tactttaatttatagctaattttactctatt--GATGTCAGT------GT-TTCT-G-TGTGT-GTAGACTTGTG---T--A-TG-T------TGCT-ATAA-TAAATAAACACAAC----TGAAG--ATTGGTA--ACA-T--GGTCAAAT-TA--TTT-------AAAAA-ATGTATAAGGA-GG---TTTATATATATCAT---TTT---TC---TAT--TTTT---agtactccgataaataga
gi|24 : AAATAAACAGAAC-TGCAGAAG--ACTGGTA--ACA-C--AGTCAAAA-TA--TTTT-CTTTTAAAAT-ATGTTTA--G-------TTT----------T---CCT---TT---TATAATTCT---ACTCCGAT-AAAAGAGACTTTGTGT
gi|25 : ttgttat------TGCT-ATGA-TAAATAAAATCGAC---AT-AGGTAACCAGTA--ACG-T--AGACAAAA-TA--TTTC-A----ACAAA-GTGTTTA--GA-AT---TGT----------G---TTT---TTAAACAT--TT---------CGAT-GAAAGatgt
gi|26 : GAAG--ACCGGTATAACGGC--GGTCGAAAATG--TTTC-A----AGAAA-GT--TTA--AG-GT---TTT----------T---TTT---AA---AAA--TTTT---ACTCCGATGGAAAGAGA
gi|27 : AATATCCCCAAA-------GTAGC-TTTAGGAAGAGACAAATATTTA-A--------GACATTG--TGATA--CATA--AGAAACAAAATAAT---ATATTT---Ttatatatttgaaata
gi|28 : AATATAAG-GATTAATCTATA-ATAGA--ATGAAAAAGCTT-GACAAAGATGCCATTTATCGTCGATTT----AAAATATATTAAACAACAAAACGTAAACAcaaatcaatatattttgtg
gi|29 : AATTAATT-A-CTGACTGT-AATAT-TTCATGTTTATAT-TTCACATAGGCCGCAGA-A----GCCAACTGCTAAA------TGTATGCGT-
gi|3 : ttaAAAAATACTTTCCAAAATATGCCCATC-------GTAGC-TTTTAGAAGAGATAAGAATTTA-AA------AGACGTCT--TGGTA--AATA--AGAGACACAATAATACACCATGTATATTTTTAATTAAAGAAAAC-TTGTGCGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAA-----------------------------GGATTGTAACGGCAAC-AAATAT---------ATTAAAAAT-TACATTAATTGTAAATCCAGTAACATAATT-TATGGAGTGTTCTGCAA--------------GAA--TGCAATAAAATCGTA--TG------TGTGGGAAAAACTGGTGTT-ACT-TGATATCAGAGGCATGCGTTAAAT-TTGTCATTTATT-AGAAGGAAGACTGACGACCCGGTAGCTATTCATTTTTGCAC-GAACTTTCACAATATAAGTGATTATTCTATA-ATAGGG-ATGAAAGAGCTT-TACAAAGATGGCATGTATCATCGATTTAGGGAAAACCTATGGAAGAAAAAAAT-TGAACACTTACGCACCAT-TCGGAATAAACAAACGGG-AACATTATTGTCTTTAAAA-ATG-CGTCTTAACATGTAAACAGAGAATATAGAAAATTGTTGTAC-AACT-ATTTT--TATA-TT-GTA--TAATTATGTATGTA-------CATGTACAATTAATT-A-CGAATTAT-A-TAT-TTCATGTTTGTAA-TTCACATAGGT--CAGT-A----GTCAACTGCT--A------TGTGTTCGT-A-ATTTCCC-TATATTTT-GTACCATTA-------C-T---TATA------TATTTCATTC-TACACTTATTCATCCTTAAGGATATGCTGACGCGGCTAACT-TA-----------GCTC-ATGTT-AA-TAT----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACGTTATTGTT-CAACT-TA--AT--AT-CA-CTG-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACCGGTA--ACG-C--GGTCGAAT-TA----TC-A----AGAAA-GTGTTTA--GA-GT---TTT----------T---TTT---TT---TAT--TTTT---ACTCCGAT-GAAAGAGACTTTGTATtc
gi|30 : ta--ACTGGTA--ACA-C--GGTCGAAA-TA--TGTC---------AA-GTGTTTA--GAGGT---TTT----------TGGGTTT---TT---TTT--CCTT---A
gi|31 : CGAG-TGGTGAAG--ACCGTTA--AGG-C--GGTCGAAA-TA--TTGG-A----AGAA-------------------------------------TT---TT---AAA--TTTT---ACTCCGAT-TAAAGATACTTTATtatataaaaagcatttac
gi|33 : CGAT-TGGTGAAG--ACTGGCG--ACG-C--TGTCCAAA-TA--TTTC-A----AGAAA-GTGTTTA--CA-GG---ATT----------G---TTTAAAAT---TAT--TTTa
gi|34 : AAAC-TTGTGCAATCCATGTG--GTGCTAAAACGTGTATTTTATGTCAACATGTCATCAA-AA-CTAA-C-aca
gi|35 : tT-CAACT-TA--AT--ATCCA-CTG-T--GACGTCATACATGTAGTACTCT-AATGTGT-GTAG--TTGTGCGTT--G-T
gi|36 : ATATGCTAAT-----TAATA-T------------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTGCTA----------TTTT
gi|37 : ttaacattctattTGTTTTGCAA--------------AAAAAT-CAATAGAATCGTATTTA------TGTGGGAAAATGTGATGTG-ACT-TTA
gi|38 : AG--ACCGGTA--ACA-C--AGCTAAAA-TA--TTTC-A----GAAAA-GT-TTTC--AA-GT---TTT----------a
gi|39 : g-TTCGCATAGGT--CAGT-ACTTAGTCAACTGCT--A------TGTGTT
gi|4 : TTATGCAA--------------AAAA-TGCAATAAAA-CGTA---A------TGTGGGAGAAACTG-TGCT-ACT-TTATATCAGAG-CATGTGTTAAAT-TTGTCACT-ATT-AGAAGAAAGACTGACGACCCGGTAGCTATT-ATTT--GCAC-GGACTCTCACAATATAAGTGATT--TC-ATA-ATAGGG-ATGGAAAAGCTG-TACAAAGATGACATTTATCGTCGATTT-GAGAAAACCTATGGAAAGAAAAAAT--GAACACTTACGCACCATCTCGGAATAAACAAACGGG-AACATTTCTGTCTTTAAAA--TG-CGTCTTAACATGTAAACAAATAATATTGAAAATTGTTGCAT-AACT-CTTTT--TATATTT-GTA--TAATTATGTATGTA-------CATGTATAATTAATT-A-CTAATTAT-A-----TTCATGTTTGTAATTTTACATAGGT--CAGTCA------CAACTGCT--A-------GTGTTTCT-A-ATTTCCC-TATA-TTT-GTACCATTA-------C-TACACGTAG-----TATTTCATTC-TACGCTT--------------ATATGCCGACGCGGCTAACA--A-----------GCTA-TTGTT-AA-T-T----CATAGAC----------TC--TTACTA------------TTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACG-TATTGTT-C-ACT-TA--AT--ATCCA-CTG-T--GACGTCATA------GTACTCT-AATGTGT-A------TGTGCTTT--G-TG-T------TGCT-ACGG-AAAATAAACACGAC-TGATGAAG--ACC-GTA--ACG-C--GGTCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--GA-GT---
gi|40 : tattaagtacactatgtttatcgtaggtttgcaatacaagtctgtagctgtaa-T--GACGTCATA------GTACTCT-AATGTGT-GTAG--T
gi|41 : tcaTTATTGTT-CAACT-TA--AT--ATCCA-CGG-T--GACG
gi|5 : AAAATGCTTTCCAA--TATGCCCATA-------GTAGC-TTTCAGAAGAGATAAGAAGTTT-AA------AGACATCTTGTGGTA--CATA--AGAAACAT-ATAAT---CTA-TT---TTTTTAA--AAAGAAAACTTTGTGCGAGCCA-GTG--GTGCTAAAAAGTG-A-TTTATGTCAATATGTCATAAA-AA-CTAC-C-AATTCGA-GATTGTAACGGCAACAAAATATCA------TATTAAAAAT-TATATT-ATTGTA---TCAGTAATGTAGTT-TATGGAGTGTT-TGC-A--------------AAAAATGCAAT-AAATCGTT--TA------TGTGGGAGAAACTGGTGC--ACT-
gi|6 : cagacttgtattgcaaacctacgataaacatagtgtacttaataaaaactctaaccacccgaatccacaaaaaaagctattccctttggacttggtctacgttgcgcgtagaatatgtttcaacagaagaaaactatcagattcaacaaagaaaataaaaaataacttaagaaaacgcggttatttagataatgatatagaaaaagaactcatcaaagtagataaatcgaccgatcaaatctcctaaactcagaaaaagacgaagcagtctatcgtgttcccttgtagtaaactattctaaaggacttccaaatattcaaaattttaaaaaatcgacaaaaaattcttgagaactctgaccgcctcT-TCGGAATAAACAAACGGG-AACAATTT-GTCTTTAAGACATGACGTCTTAACATGTAGACACAGAAGATAAAAGAT-GTTGTACGAACTGAATTT--TATA-TT-GTA--TAATGACGTGTGTA-------ATTGTACAATTCATT-AGTTAAT-GT-AATGT-TTCATGTTTGTAA-TTCGCATAGGT--CAGT-A----GTCAACTGCT--ACATGTATGTGTTCAT-A-ATTACTC-CATATATT-GTAACATTA-------A-T---TATA------TATTTCATTC-TATGCTTATTCATCGTTGAGGATATGCTGACGGGGCTAAGT-AA-----------GCTAATTGTT-AAAT-T----CATAGAC----------TC--TTACTA----------TTTTCAAATGTT----TTGCGCGTAA--TTTCAACT-GTGACAATACTGTT-CAATT-CA--AT--ATCCA-TTG-T--GACGTCACA------GTACTCT-AATGTAT-GTAG--TCGTGCGTT--GTTGTT------TGCT-ACGG-AAAATAAACACGAC-TAATCAAG--ACAGCT---ACG-CAAGATCGAAA-TA--TTTC-A----AGAAA-GTGTTTA--
gi|7 : AATATGCCCATA-------GCAGC-TTTCAGAAGAGATAAGAATTTA-AA------AGACATCT--TGGTA--CATA--AGAAACACAATAAT---CTATTT---TTTTT-------TTAAAC-TTGTGTGAGCCATGTG--GTGCTAAAAAGTGCATTTTATGTCAATATGTCAT-AA-AAACTAA-CCAATTCGAGGATTGTAACGGCAAC-AAATATCA------TATTAAAAAT-TACATTAATTGTAAATCCAGTAACGTAGTT-TATGGAGTGTTCTGC-A--------------AAAAATGCAATAAAATCGTA--TA------TGTGGGAGAAACTGGCGCT-ACT-TT-----AGAGGCATGTGTTAAAT-TTGTCACTTATT-AGA------------------------ATTCATTTTTGCAC-GGACTCTCACAA------TGATTATTCTATA-ATAGGG-ATGGAAAAGCTT-TACAAAGATGACATTTATCGTCGATTTAGAGAAAACCTATGG--GGGAAAAAT-TGAACACTTACGCACCAT-TCGGAA
gi|8 : AGAAATGCTTTTAAAAATATGCCCATAGTACAT-GTAGCATTTTAAAAG--------ACTTAGAG------AGACATGT--TAGTA--CATA--TAAAATACTATGAC---CTATTT---TTTTAGA--AACGAAAAT-CTTTGCTCGTCATGTG--TTGTTTCAAATTA-ATTTTATGGCAATGTTCCATGAA-AG-CTAATC-AATTCGAAGACTGTAATGGTAAC-AAATATCC------TG-TAAAAATATATATAAATTGTACATCCAGTAATGT------------TGTTTTGCAACCAAAAAAAAAAATAAAAATGTAACAGAATCGTA--TA------TGTATGAGAAACT----TTAACT-TTATATCAAATGCCTGTGTTGAAT-TTATCACTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAATATCGGGAGATCGGAACAAATCATGTGTTGAAAAATCTTAATAGCTACCATTATTATATGTACTATGTATTGATGACTCTTTTGGAATATGTACCGGAACAGAATAACGTAAACAATTTTATACATTCCTTGACCTGCGACAATTTAATACCAAAACAGGTTTCCTTGATATAACGAACTCAATAGCGGGTGGATCCTTTTCCACTTAATTATATTGCAAACCTACCGATAAACATACACATCTTAATAAAAGCTCTGACCAACCCGAATTGACAAAACACTATTCGCTTTGGACTTGGTGTATGTGCCTGTAGAATATGTTCAATAGAAGAAAAATACCAGCTTCAACGAAAGACAATAAAAAACAACGT
Unaligned ( gi|19 ): ACGCGGTTATTTAGATAATGATATACTGTAGAAAAAGAACTCATCAAAGTAGATAAACTCGACTGATCAAATCTCCTAAACTACAGAAAAAAGACGAAGCAGTATAATCGTGTTCCCCTTGTAGTAAACTACTTTAAAGGACTTCCCAATATTCATAAA
Unaligned ( gi|20 ): TGTTTATATGGGGGGATGGGAAAAAATCCTTTTTGAAAAATCTGAAAAGCTACCAGTATTTTATGTACGGTATATTGATGACATGTTTGGCATCTGGACCGGAACTGAAGAAGAACTTAAACCGCGAATGAAATACATCCGAATATTC
Unaligned ( gi|23 ): GTTTACATGGGGGTATGGGGGAATGGGTACAAATCCTTTCTGAAAATCTGCTAATATTTTATGTACAATATTTTGATGACATTTATTGCATCTAGACCGCCACAGAGGAACTTAAACA
Unaligned ( gi|32 ): TAAAAGCTCGAACCACCCCGAATCCATCAAAAAAAAAAAAAAAACCTATTCCCTTTGGACTTGGTCTACGTGCGTG