lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 1 555555555 3 4 22 11111 1 22 5555555555 22222 555555555555 1111 777777777777777 1 22 2222 1111111111111111111111111111111111111111111111111 222222 666 11 55555 1 33 555555555 555555 222 222 222222 3333333 111 555555555555555555555555 333 555555555555555 1 4444 222222222 333333 111 333333333333333333333 333 1 1 11 888888888888888888888888888 11111 3 33 3333
lowQualScore : 7 444444444 3 0 55 11111 0 00 3 1111111111 5 11111 0 111111111111 6 4444 333333333333333 0 0 44 6666 2222222222222222222222222222222222222222222222222 888888 5 5 333 11 5 22222 0 22 555555555 5 777777 333 4 333 4 4 666666 3333333 4 444 111 555555555555555555555555 8 0 333 2 444444444444444 1 1 4444 111111111 888888 333 7 555555555555555555555 7 111 5 4 4 66 444444444444444444444444444 55555 2 4 4 33 0000 5 3 8
lowQualScore : . ......... . . .. ..... . .. . .......... . ..... . ............ . .... ............... . . .. .... ................................................. ...... . . ... .. . ..... . .. ......... . ...... ... . ... . . ...... ....... . ... ... ........................ . . ... . ............... . . .... ......... ...... ... . ..................... . ... . . . .. ........................... ..... . . . .. .... . . .
lowQualScore : 0 000000000 8 0 33 88888 6 88 8 5555555555 7 44444 4 000000000000 7 2222 777777777777777 8 3 33 5555 4444444444444444444444444444444444444444444444444 777777 0 7 000 99 0 99999 0 00 888888888 0 000000 000 0 000 0 6 666666 1111111 4 999 222 555555555555555555555555 0 6 777 8 222222222222222 4 7 0000 777777777 888888 333 3 666666666666666666666 7 999 0 1 4 77 000000000000000000000000000 99999 0 5 5 00 2222 0 5 0
consensus : AAATTACAA--CG--T--ACAAAATACT-GCAGCAAGGATG-ATCAGTCGCACTAAAAAGTTATG--A--TCATATTCACACCGG-TTATNGTAAGAC-CTTCATTGGCCTTCCGGTAGAGTATCGCAT-----T-CAATTCAAAGTT-CTCG----TGCA--TACCTAC-----CAAGGCCGTTCGCAGCATCG-GACCTACT-TACCTTAGCGAACT-G-AT---CCAACATTA---TTCT--CCGTC---GCGAAC-TTGAG-AATCAGAAA-AAAAACAGGAT-GCTTTT---AAAAGTTC--CTCGGAC-TAGAA---CGAAGTC-AATTGGAAACAGGACGCTTTCGGACTTATCTTGG-GCCAA-CAC--TGTGGAAAC-GCC-TTA-CCATTTG----GGATTA-C-C--TGTGCC-AAATCA-T-TG--NACATTT--TTTTAAA-CAAC-TCC--TAAAGAC-TCATTTCTTTAA--GCTTGCTTTT---TAT--T------CTAATTCCAACAAGA-CA-TTCTT------AGTTTTTAG----GTTGA-AAATTTATAT---TACTAA--ACA-A---TTCTTTTGTAGC-GACTATCATTGAA-TGCTCACTTTTA--TGCATGTATGT---TAT--ATATATATA---TTG--ATGTAAA-AGCGCTTTAG-AGATTTTGA--TTGATTAGGGCG--CTATACAAATTTTAGTATTATTATT-TATT
Reference ( gi|1 ) : AAAATACAA--AA--T--ACAAAATACTTGCAGCAAGGATGCATCAGTCGCACTAAAAAGTTATG--A--TCATATTCACACCGGCTTTTCGTAAGAC-CTTCATTGGCCTTCCGGTAGAGTATC-CAT-----TTCAATTCAAAGTT-CTTG----TGCAATCACCTAC-----CAAGGCCGTTCACAGCATCGCGACCTACG-TACCTTAGCGAACTTGCATG--CCAAC-TTACATTCCT--CCGTC--GGCGAACATTGAGCAATCAGAAA-AAAAACAGGAT-GCTTTTTCAAAAAGTTC--CTCGGAC-TAGGAAC-CGAAGTC-AATTGGAAACAGGACGCTCTCGGACTTATCTTGG-GCCAAGCAC-GTGTGG-A-T-GCC-T-A-CCATTTG----GGATTG-C-C--TGTGCC-AAATCA-T-TG--CACATTTTCTTTTAAA-CAAC-TCCCTTAAAGAC-TCATTTCTTTAAGGGCTTGCCTTT---TAT--T------CTAATTCCAATAAGAGCAGTTCTT------AGATTTTAG----ATTGA-GGATTTATAT---TACTTA--ACA-A---TTTTTTTATAGC-G-TTATCCTTGTA-TGCTCACTTTTA--TGCATGTATAT---TAT-CAT-TATATA---TTGC-ATGTAAA-AGCGCTTTAGCAGATTTTGACTTTGATTAGGGCG--C-ATACAAATTTTAGTATTATTATT-TATT
gi|2 : AAATTACAA--CAGGT--ACAAAATACT-GCAGCAAGGATG-ATCAGTCGCACTAAAAAGT-ATG--A--TCATAT-CACACCGG-TATTAGTA-GAC-CTTCATTGGC-TTCCGGTAGAGTATCGCATAACCATTCCATTCAAAGTT-CTTG----TGCA--TACCTAC------AAGGCCGTTCACAGCATCG-GACCTACT-TACCTTAGCGAAC-TG-AT---CCAACATTA---TTCT--CCGTC---GCGAACGTTGAG--ATCAG-----AAAACAGGAT-GCTTTT---AAAAGTTC--CTCGAAC-TAGAA---CGAAGTC-AACTGGAAACA-GACGCTTT--GAC-CATCTTGG-GCCAA-CA--GTGTGGAA-T-GCCTT-A-CCA-TTA----GGATTA-TGT--TGTGCC-AAATCA-T-
gi|3 : gttattccagccgaggaatatacggggaatcaagaaactctcgacgatgatacaggcaaaacatctnnnnnnnnnnnnnnnnnnnnnnnnncaatacatgctctcgtcacatcaaaactagactatgctaatgcattgttacttggccttccaaacagtgctaccaacAAATTACAA--CA--TGTACAAAATACT-GCAGCAGTGACG-ATCAGTCGCACTAAAAAG-TATG--A--TCATATT-ACACC--CGTATTGTTAGAC-CTTCATTGG-CTTCCAGTGAAGTATTGCA------TTAAATTCGAAGTT-CTCATAATTGCA--TACCTA------CAAGGCCGTTCTCTGATTCG-GACCTA------CTTTGCAAA-----ATGATTCAAC-TT-TATT-CT--CTGTT---GCGAACATTGTG--ATCAG-----AAAACAGAAT-GCTTTT---AACAGTTC--CTCAGAC-TAGAA---CAAAGTC--ATTGGAAACA-GACGTTTT--GAC-TATTTTGT-GTCAA-TAC--TGTGGAA-C-GCCTT-A-CCATTTGATTTGGATTATT-T--TGTGCCAAAATCA-C-TG--AATAT----TTTTAAA-CAA---ACCCTAAAGAT-TCCTTTCTTTAA--GCTTG-CTTT---TATTAT------TTAATTCC-ACAAGA-CA-TTCTT------AGTTTTTAG-----CTGA-AAA-TTATAT---TA--TAAGACATA---CTTTTGT-TAGCAA-CTATCATTGAA-TGCTCACTTTTA----CATAT
gi|4 : gctagcaacAAATTACAACGGG--T--ACAATATACTGGCAGCAAGGATG-ATCAGTCGCACTAAAAAG-TATGAAA--TCA-ATT--CACCGG--TATTGT-AGAC-CTTCATTGGCCT--CGGT
gi|25 : gtgttcggactctcgaaacaaggaagcgtaaaataagctaataccagcattactttcgatggatgtctcattaagtctgttccatagtcaaaactttggggtccttattttgaatgaaaaatctaagcatgggaaaacactgtctgcagtggtcaagtttcttgttatttccagttgaggaaacattagagagatcagattacctcatcgacgatgatacatgcaaaacattaatactgctgttctcgtacatcaaagactagactatgctaatgcattgttacttggcctgtccaaacagtgctacccaacTACT-GCAGCAAGGATG-ATCAGTCGCACTAAAAAGT-ATG--AAATCA-ATTCAC--CGG--TATAGTA-GAC-CTTCATTGGCCTCACGGTAGAGTA
gi|20 : AGGATG-ATCAGTCGCACTAAAAAG-TATG--A--T
gi|31 : caaaatgacatccgaatggattacaacatggcaacttaatactgcaacataaaaacaaattatttagtagttacttttgaattatcACTAAAATGTC-TG--G--TCATATT-ACGCCGG-TATTGATA-TAC-CTTCATTGG-CTTCCAGTACAGTATC-
gi|5 : AGAC-CTTCATTGG--------TAGAGTATCGCAT-----T------CAA--TT-CTTA----TGCA--TACCTACAACTACAAGGCCGTTTACAGCATC-TGACCTACT-TACCTTAGCGAAC-TG-AT---CCAACATTA---TTCT--CCGTC--------------GCGATCAG-----AAAACAGGAT-GCTTTT---AAAAGTTC--CTCGGAC-TAGAA---CGAAGTC-AATTGGAAACA-AACGCTTT--GAC-TATCTTGG-GCCAA-CAC--TGTGGAA-T-GCCTT-A-CCA-TTA----GGATTA-CAT--TGTGCC-AAATCA-T-TG--GATAT----TTTTAAA-CAAC-TCC--TAAAGAC-TCATTTCTTTA---GCTTGCTTTTGAATA---T------CTAATCTCAACAAgcagtca
gi|6 : tGACACTGCATTGGC-TGCCAGTTGCGCAACGCAC-----TG-AATACAAAATT-CTCC----TACA--TACATAC------AAAGCAATTCACAACATTTCG--CCACAATACATCGAGGAACT--CAT---------TCACATTTAC--CAACCAGGGCGATTTCTAAG--ATCAGAAA-ACAAACAGG
gi|7 : AGTGTCGCAT-----T-CAATTCAAAGTTTCTTG----TGCA--TACCTGC------AAGGC-GTTCGCAGCATCG-GACCTACT-T-CCTTAGCGAACT-G-AT---CCAACATTA---TTCTAACCGTC--GCGGAAC-TTGAG-ACTCAGAAACAAAAAC----T-GCTTTT---AAAAGTTCTTCTCGGACCTAGAA---CGAAGTCCAATTGGAAACAG-ACACT-TCG-ACT-ATCTTGG-GCCAA-CAC--TGTGG-AAT-GCC-TTA-CCATT-G----GGATTG-C-CGTTGTGCC-AAATCA-T-TGGCCACATT---TTTTAAACCAAC-TCC--TAAAGcgctggtaaaaacaaaatttcgaacgttcacgtctggcaacagacgattagatgtggctgcaacatccctctggaactctttatcatcacatctccattcatgtctatcagtgcatacttttaaaaacatcttaaaattcatatttttaagaaagcttt
gi|8 : GTGTCGCAA-----TGCAATTCAAAGTT-CTTG----TGCA------TACTG---CAAGGC-GTTCGCAGCATCGGAACCTACT-T-CCTTAGCGAACT-G-AT---CCAACATTA---TTCT--CCGTC--CGCGAAC-TTGAG-ACTCAGAAACAAAAAC----T-GCTTT----AAAAGTTTT-CTCGGAC-TAGAA---CGAAGTCCAATTGGAAACAG-ACACTTTCG-ACT-ATCTTGG-GCCAA-CAC--TGTGG-AAT-GCC-TTA-CCATT-G----GGATTG-C-CGTTGTGCC-AAATCA-T-TG--CACAT----TTTTAAACCAAC-TCAACTAAAG
gi|19 : AATCAGAAA-A----CAGGATTGCTTTTT--AAAAGTTC--CTCGAAC-TAGGACCACGAAGTC-AGATGGAAACA-GACGCTTT--GAC-CATCTTGG-GCCAA-CA--GTGTGGAA-TGGCC-T-A-C
gi|21 : aagAT-GCTTTT---AAAATTTC--CTCAGCT-TAG--------AGTC-ATTAAGAAACAG-ACACT-TCGA--TTATTTTTTCGTCAA-TAT--TGTGG-AAC-ACC-T-TTCCATT-A----GGTTTA-CGT--TGTGCC-AAATAA-C-TG--atcgggt
gi|9 : --CTCGTAC-TAGAA---CGAAGTC-ATTTGGAAGCAG-ACGCTTT--GACT-ATTTCAC-GCCAA-TACTGTG-GG-A-C-GCC-TTA-CCATT-A----GGATTA-C-GG-TGTGCC-CCATCA-C-TG--GATATTTC----TAAA-CAA------------AC-C---TTCTTTAAA--CTTGCTTTT---AATG-T------CTAATTC-AACAAGA-CA-TTCTT------AATTTTTTG----GT-GA-AAATTTATAT----ATTAG--ACA-----TTCTTTTGTAGC-AATTATCATTAAA-TGCTCATTTTTGCTTACATGTATGT---ga
gi|12 : taCAC--TATGG-AAT-GCT-TTA-CTGGTTG----G-ATTA-C-C---GTGCA-GAATCAATATG--GACATTTC-----AAA-CAACATCTC---GAGAC-TCATTTCTTTAAgtgtatatgtatgat
gi|29 : aggactcaactaagacttgtggaaccattcagtgccttGG-A-T-GCC-TTA-CCATT-A----GGATTA-C-G--TGTGCC-AAATCA-T-TG--CACAT----TTTTAAA-CAAcattgattttaatatttaac
gi|15 : tcgccaaagttgtaaaaaTTTCTAT--AA-CGAC-T-------AGACCTCATTTCATTA--GGCTTGCTTTT---T-T--TAAAAAATTAA-CCCAAC-AGA-CAATTCTT------AG-TTTTAG----G-TGA-AAA-TTATA---------A--GCA-A------------------CTATCATTGAA-TGCTCACTTT
gi|23 : acttaAAGAG-TTGCTTTT---AATA-T------CTAATTT-AATAAGA-CA-TTCTT------AGCTTTTAG----G-TGA-AAATTTATACCGGTATATAAGACATA---TTCTTTT-TAGC-acttatatat
gi|28 : taaacaaacccca------CTAATTC-AACAAGA-TA-TTCTT------AGTTTTTAG----A-TGA-AAATTTATAT---AATAGA--AAT-A---TTTTTTTGCAGCAA-CTATCATTaactacc
gi|35 : TAATTCCAATAAGGACAG-TCTTAAGAAAAAATTTTAGAAAAATTGAGGGATTTaa
gi|17 : ---TACTAA--ACA-AA--TTCTTTTATAGC-GATTATTATTGAAATGC--A--TGTA--TGTATGTATAT--------AT--ATATA--------ATGTAAA--GCGCTTTAG-AGATTT-GA--TTGATGAGGGCGGCT-ATACAA--TTTAGTATTATTA-T-TATT
gi|30 : ta---TACTAA--ACA-A---ATTTTTTATAGC-GATTATCATTGAA-TGCTCACTTTTA--TGCATGTATGT--------ATGTATATA---Ta
gi|14 : aACTAA--ACA-A---ATTTTTTATAGC-GATTATCATTGTA-TGCTCACTTTTA--TGCATGTATG----TATGTATATATATA---TTG--ATGT-AA-AGCGCTTTAG-AGA-TTTGA--TTGATTAGGGCG--CTATACAAATTTTAGTATTATTATata
gi|13 : A--ACA-AGATTTTCTTTACCGT-A-TTATCATTGAA-TGCTCACTTTTA--TGTATGTATGTATGTAT-AA---ATATA---T----ANNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--N-NNNNNNNNTTTAGTATTATTATT-TATagtatt
gi|27 : gca--ACATA---TTCTTTTGTAGC-AACTATCATTGAA-TGCTAACTTTTACTTACATGTGTAT---
gi|22 : ttatagTATCATTGAA-TGTTCACTTTTA--TGCATGTATG----TATGTATATATATA---TAGTAATGT-AA-AGCGCTTTAG-AGA-TTTGA--TTGATTAGTGCG--CTATACAAATTTTAGTATTA-TATT-gtgtgtgtatgtatgaa
gi|10 : cCAATTTTAA-TGCAGG-ACAT---T-----T-TGTATGCGTTTG--ATGTGAT--GCACTTTAG-ATATTTTAAATTC-ATTAGGGTG--CTATACAAATTTTAGTGTTGTata
gi|26 : tcagaaaatgactattcttagaattttgttttacagaagataagttctgtcagagttttgatagcacataata-ATGTATATAGCGTTTTAG-AGATTTTGA--TTGAATAGGGCA--CTATACAA
gi|33 : tgcgtgtgtgcgcgtacttgcgtgcgtgttttaAA-AGCACTTTTGGGGATTTTGACT--GATTCGGGCA--CTGTACAAATTTTAGTATTG-TATTGTAT
gi|34 : ttGCTTTAG-AGATTT-GA--TTGATTAGGGCG--CTATTCACATTTTAGTATTATTAAT-TATT
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TGTTCGGACCTAGAAACAGCAAGCGTAAAATAGCTAATACCAACATTACTTTTGATGGATGTCTCATTAAGTGTGTTCCGGTAGTCAAAAACTTGGGGACTTATTTTGATGAAACCTAAGCATGGGAAAACACCTGTCTGCAGTGGCCAAGTCTTGTTATTTCC
Unaligned ( gi|16 ): CAGCATGGCCCTAACTGGAAACTGTGTTACCATCGGGACAAGTCTTCATTCATGGTCGCAATACAGTGTACACTTAAGAAAACATAGCTTAAAACGGCATCTTTTTTAAGATGACCTTTTCGGTTTACAG
Unaligned ( gi|18 ): TAATTCAACAAGACTTCTTATTTTTAGTGTGAAATTTATATATCCAGAGCATATTCTATTTGTAGCAACTATCATTGAATGCTCACTTTGACTTTTGTATGTATGTGTGTGCATGTATGTA
Unaligned ( gi|24 ): TGGGGGCTTATTTTGGATGAAACTAAGCATGGAAAACATCTGTCTGCACTCTGAGTGGCCAAGTCTTGTTATTTTCCAGTTGAGGAACATAGGAAGAATCAGAT
Unaligned ( gi|32 ): CCATTCCTGGCCATCAGTGTACACTCTTCTAAAATAAATCCTAAAACTCGTCTTTTTAAGAAGGT
Unaligned ( gi|36 ): AAAATCTCGAACATCCACGTATGGCAACAGACGATT
Alignments
lowQualScore : 33333 11 11 2 222 1 1 22222222 1111 444444 1 111 11 1 111 111 111 3 444444 2222222 1 22222 11 333333333333333 1 2222 11111 1111 222 1111 1 11
lowQualScore : 55555 8 8 6 99 55 7 3 555 1 6 5 8 5 00000000 0 5 1 2222 77 0 000000 7 2 77 888 5 2 0 5 5 5 1 000 55 777 5 7 000 3 333 3 1 4 222 4 55 99 777 55 777 8 5 0 111111 4 55 3 66666 6666666 9 7777 1 77777 3 3 555 666 44 55 1 3 6 66666666 1 4 0 66 0 77 333333333333333 99 5 999 3 7 5 2222 77 3 55555 3 99 3 9999 444 2 3 1111 9 4 4 8 00 4 3 1 6
lowQualScore : ..... . . . .. .. . . ... . . . . . ........ . . . .... .. . ...... . . .. ... . . . . . . . ... .. ... . . ... . ... . . . ... . .. .. ... .. ... . . . ...... . .. . ..... ....... . .... . ..... . . ... ... .. .. . . . ........ . . . .. . .. ............... .. . ... . . . .... .. . ..... . .. . .... ... . . .... . . . . .. . . . .
lowQualScore : 22222 0 0 7 11 77 3 3 777 0 0 0 1 0 22222222 1 7 4 1111 99 7 000000 9 7 99 666 7 0 1 7 7 7 7 000 77 333 7 1 111 2 222 2 8 4 222 4 55 55 000 55 000 0 0 0 999999 0 00 3 00000 5555555 9 7777 0 88888 3 3 444 000 22 00 8 3 7 22222222 4 4 7 11 7 99 666666666666666 00 7 444 9 6 0 2222 11 3 44444 3 11 3 6666 555 5 6 1111 0 4 4 4 66 4 2 7 7
consensus : AAATTACAACA-G--TACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGTTATG--ATCATATT-ACACCGG-TTATNGT-AGAC-CTTCATTGGCCTTCCGGTAGAGTATCGCA-T------TCAATTCAAAGTT-CTCGT----GCA--TACCTAC------AAGGCCGTTCGCAGCAT--CG-G-ACCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGT-C-GC-GAAC-TTGAG-AATCAGAAA-AAAAACAGGAT-GCTTTT---AAAAG-TTC--CTCGGA--CTAGA---A--CG---AAGT-CAATTGGAAACA-GACGCTTT--GAC-TA-TCTTGGGC--CAA-CA---C-TGTGG-AA---CGCCTTACCA-TTG----GGATTAC-C---T-GTGCCAAA-TCA-T-TG--NACATTT--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTTAA--GCTTGCTTT--T---TAT-T------CTAATTCCAACAAGA-C-A-TTCTTAGTTTTTAGG-TGAAAATTTATAT---TAC-TAA-ACA-A--TTCT-TTTG-TAGCG-ACTATCATTGAATGCTCACTTTTA----TGCATGTATGTG--TGT-GTATATATAT-TG-ATGT-AAAGCGCTTT-AG-AGATTTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTATT-TATT
Reference ( family-1138 ) : AAATTACAAC--G--TACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGTTATG--ATCATATTCACACCGG-TTATNGTAAGAC-CTTCATTGGCCTTCCGGTAGAGTATCGCA-T------TCAATTCAAAGTT-CTCGT----GCA--TACCTAC-----CAAGGCCGTTCGCAGCAT--CG-G-ACCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGT-C-GC-GAAC-TTGAG-AATCAGAAA-AAAAACAGGAT-GCTTTT---AAAAG-TTC--CTCGGA--CTAGA---A--CG---AAGT-CAATTGGAAACAGGACGCTTTCGGACTTA-TCTTGGGC--CAA-CA---C-TGTGGAAA---CGCCTTACCATTTG----GGATTAC-C---T-GTGCCAAA-TCA-T-TG--NACATTT--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTTAA--GCTTGCTTT--T---TAT-T------CTAATTCCAACAAGA-C-A-TTCTTAGTTTTTAGGTTGAAAATTTATAT---TAC-TAA-ACA-A--TTCT-TTTG-TAGCG-ACTATCATTGAATGCTCACTTTTA----TGCATGTATGT---TAT-ATATATATAT-TG-ATGTAAAAGCGCTTT-AG-AGATTTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTATT-TATT
gi|1 : AAAATACAAA--A--TACAAAATACTTG-CAGCAAGGATGCATCAGTCGCACTAAAAAGTTATG--ATCATATTCACACCGGCTTTTCGTAAGAC-CTTCATTGGCCTTCCGGTAGAGTATC-CATT------TCAATTCAAAGTT-CTTGT----GCAATCACCTAC-----CAAGGCCGTTCACAGCAT--CGCG-ACCTACG-TACCTTAGCGAACTTGCATGCCAAC-TTACATTCCT--CCGT-CGGC-GAACATTGAGCAATCAGAAA-AAAAACAGGAT-GCTTTTTCAAAAAG-TTC--CTCGGA--CTAGG---AACCG---AAGT-CAATTGGAAACAGGACGCTCTCGGACTTA-TCTTGGGC--CAAGCA---CGTGTGG--A---TGCC-TACCATTTG----GGATTGC-C---T-GTGCCAAA-TCA-T-TG--CACATTTTCTTTTA-AA-CAACTC--CCTTAAAGAC-TCATTTCTTTAAGGGCTTGCCTT--T---TAT-T------CTAATTCCAATAAGAGC-AGTTCTTAGATTTTAGATTGAGGATTTATAT---TAC-TTA-ACA-A--TTTT-TTTA-TAGCG--TTATCCTTGTATGCTCACTTTTA----TGCATGTATAT---TATCAT-TATATAT-TGCATGTAAAAGCGCTTT-AGCAGATTTTGACTTTGATTAGGGC-GC-ATACAAATTTTAGTATTATTATT-TATT
gi|10 : CAATTTTAA---TGCAGG-ACAT---TTT-GTATGCGT-T-TG-ATGTGAT-GCACTTT-AG-ATATTTTAAA-TTCATTAGGGT-GCTATACAAATTTTAGTGTTGT
gi|12 : tcagaaaatgactattcttagaattttgttttacagaagataagttctgtcagagttttgatagcacataata-CA---C-TATGGAA----TGCTTTACTGGTTG----G-ATTAC-C-----GTGCAGAA-TCAATATG--GACATTT--C---A-AA-CAACAT--C--TCGAGAC-TCATTTCTTTAA--CATTGATTT--TAA-TAT-T-------TAA
gi|13 : aggactcaactaagacttgtggaaccattcagtgccttAA-ACA-AGATTTT-CTT--TACCGTATTATCATTGAATGCTCACTTTTA----TGTATGTATGTA--TGT-ATAAATATAT-AN-NNNNNNNNNNNNNNN-NN-NNNNNNNNN--NNNNNNNNNNN-NNNNNNNNNNNTTTAGTATTATTATT-TATc
gi|14 : gcAC-TAA-ACA-A--ATTT-TTTA-TAGCG-ATTATCATTGTATGCTCACTTTTA----TGCATGTATGTA--TGT-ATATATATAT-TG-ATGT-AAAGCGCTTT-AG-AGA-TTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTAT
gi|15 : T--TTCTATAA-CGACT---------AGACCTCATTTCATTAG--GCTTGCTTT--T---T-T-TAAAAAATTAA-CCCAAC-AGA-CAA-TTCTTAG-TTTTAGG-TGAAAA-TTATA------------------------------AGCA-ACTATCATTGAATGCTCACTTTagtatt
gi|17 : actta---TAC-TAA-ACA-AA-TTCT-TTTA-TAGCG-ATTATTATTGAA-----------A----TGCATGTATG----TAT-GTATATATATATA-ATGT-AAAGCGCTTT-AG-AGA-TTTGA--TTGATGAGGGCGGCTATACAA--TTTAGTATTATTA-T-TATTacttatatat
gi|18 : taTAATTC-AACAAGA-C---TTCTTA-TTTTTAGTGTGAAA-TTTATATA--TCC-AGA-GCATA--TTCTATTTG-TAGCA-ACTATCATTGAATGCTCACTTTGACTTTTGTATGTATGTG--TGT-GCATGTATGT-a
gi|19 : AG-AATCAGAAA-A----CAGGATTGCTTTTT--AAAAG-TTC--CTCGAA--CTAGGACCA--CG---AAGT-CAGATGGAAACA-GACGCTTT--GAC-CA-TCTTGGGC--CAA-CA---G-TGTGGAAT---GGCCTa
gi|2 : aAAATTACAACAGG--TACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGT-ATG--ATCATAT-CACACCGG-TATTAGTA-GAC-CTTCATTGGC-TTCCGGTAGAGTATCGCA-TAACCATTCCATTCAAAGTT-CTTGT----GCA--TACCTAC------AAGGCCGTTCACAGCAT--CG-G-ACCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGT-C-GC-GAACGTTGAG--ATCAG-----AAAACAGGAT-GCTTTT---AAAAG-TTC--CTCGAA--CTAGA---A--CG---AAGT-CAACTGGAAACA-GACGCTTT--GAC-CA-TCTTGGGC--CAA-CA---G-TGTGG-AA---TGCCTTACCA-TTA----GGATTATGT---T-GTGCCAAA-TCA-T-acatcgggt
gi|20 : gttattccagccgaggaatatacggggaatcaagaaactctcgacgatgatacaggcaaaacatctnnnnnnnnnnnnnnnnnnnnnnnnncaatacatgctctcgtcacatcaaaactagactatgctaatgcattgttacttggccttccaaacagtgctaccaacAGGATG-ATCAGTCGCACTAAAAAG-TATG--AT
gi|21 : caaaatgacatccgaatggattacaacatggcaacttaatactgcaacataaaaacaaattatttagtagttacttttgaattatcAT-GCTTTT---AAAAT-TTC--CTCAGC--TTAG-------------AGT-CATTAAGAAACA-GACAC-TTCGA--TTATTTTTTCGT--CAA-TA---T-TGTGG-AA---CACCTTTCCA-TTA----GGTTTACGT---T-GTGCCAAA-TAA-C-TG--GA
gi|22 : CTATCATTGAATGTTCACTTTTA----TGCATGTATGTATGTAT-ATATATATAG-TA-ATGT-AAAGCGCTTT-AG-AGA-TTTGA--TTGATTAGTGC-GCTATACAAATTTTAGTATTA-TATT-
gi|23 : TA-AA-CAAACC--C--CAAAGA----------------G-TTGCTTT--T---AATAT------CTAATTT-AATAAGA-C-A-TTCTTAGCTTTTAGG-TGAAAATTTATACCGGTATATAAGACATA--TTCT-TTT--TAGCA-ACTACCata
gi|25 : TACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAG-TATGAAATCA-ATT--CACCGG--TATAGT-AGAC-CTTCATTGGCCTCACGGTAGAGTA
gi|26 : ----TGCGTGCGTGT---TTT-A-ATGTATAT-----------AGCGTTTT-AG-AGATTTTGA--TTGAATAGGGC-ACTATACAA
gi|27 : tgcgtgtgtgcgcgtactT---TA--TAG-ACATA--TTCT-TTTG-TAGCA-ACTATCATTGAATGCTAACTTTTACT--TACATGTGTATG--TGT-GTGTATGTAT-
gi|28 : ------CTAATTC-AACAAGA-T-A-TTCTTAGTTTTTAGAT-GAAAATTTATA----TAA-TAG-AAATA--TTTT-TTTG-CAGCA-ACTATCATTAAgaa
gi|29 : GC--CAA-AG---T-TGTAAAAAGGATGCCTTACCATT-A----GGATTAC-G---T-GTGCCAAA-TCA-T-TG--CACA--T--TTTTA-AA-CAA
gi|3 : tcAAATTACAACATG--TACAAAATACT-G-CAGCAGTGACG-ATCAGTCGCACTAAAAAGT-ATG--ATCATATT-ACACCCG-T-ATTGTTAGAC-CTTCATTGGC-TTCCAGTGAAGTATTGCA-T------TAAATTCGAAGTT-CTCATAATTGCA--TACCTAC------AAGGCCGTTCTCTGATT--CG-G-ACCTACT-T----T-GCAAAA-TG-AT-TCAACTTTA---TTCT--CTGT-T-GC-GAACATTGTG-A-TCAGAAA-A----CAGAAT-GCTTTT---AACAG-TTC--CTCAGA--CTAGA---A--CA---AAGT-CA-TTGGAAACAG-ACGTTTT--GACT-A-TTTTGTGT--CAA-TA---C-TGTGGAA----CGCCTTACCATTTGATTTGGATTAT-T---TTGTGCCAAAATCA-C-TG--AATATTT--T--TA-AA-CAAACC--C--TAAAGAT-TCCTTTCTTTAA--GCTTGCTTTTAT---TAT-T-------TAATTCC-ACAAGA-C-A-TTCTTAGTTTTTA-GCTGAAAA-TTATAT---TAT-AAG-AC--A--TACT-TTTGTTAGCA-ACTATCATTGAATGCTCACTTTTA------CATAT
gi|30 : gctagcaac---TAC-TAA-ACA-A--ATTT-TTTA-TAGCG-ATTATCATTGAATGCTCACTTTTA----TGCATGTATG----TAT-GTATATATAT-
gi|31 : aACTAAAATGTC-TG--GTCATATT-ACGCCGG-T-ATTGATATAC-CTTCATTGGC-TTCCAGTACAGTATCGCA-G------TCAa
gi|32 : ATT-C-C---T-G-GCCA---TCA-G-TG--TACACTC--TTCTA-AAATAAATC--C--TAAA-AC-TCGTCTTTTTAA--G
gi|33 : ccAAAGCACTTTTGG-GGATTTTGA--CTGATTCGGGC-ACTGTACAAATTTTAGTATTG-TATTGTATaaggt
gi|34 : ttGCTTT-AG-AGATTT-GA--TTGATTAGGGC-GCTATTCACATTTTAGTATTATTAAT-TATT
gi|4 : AAATTACAAC--GGGTACAATATACT-GGCAGCAAGGATG-ATCAGTCGCACTAAAAAG-TATGAAATCA-ATT--CACCGG--TATTGT-AGAC-CTTCATTGGCCT--CGGTatt
gi|5 : gtgttcggactctcgaaacaaggaagcgtaaaataagctaataccagcattactttcgatggatgtctcattaagtctgttccatagtcaaaactttggggtccttattttgaatgaaaaatctaagcatgggaaaacactgtctgcagtggtcaagtttcttgttatttccagttgaggaaacattagagagatcagattacctcatcgacgatgatacatgcaaaacattaatactgctgttctcgtacatcaaagactagactatgctaatgcattgttacttggcctgtccaaacagtgctacccaacAGAC-CTTCATTGG--------TAGAGTATCGCA-T------TCAATTC--------TTAT----GCA--TACCTACAACTACAAGGCCGTTTACAGCAT--CT-G-ACCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGT-C-GC-G-----------ATCAG-----AAAACAGGAT-GCTTTT---AAAAG-TTC--CTCGGA--CTAGA---A--CG---AAGT-CAATTGGAAACA-AACGCTTT--GAC-TA-TCTTGGGC--CAA-CA---C-TGTGG-AA---TGCCTTACCA-TTA----GGATTACAT---T-GTGCCAAA-TCA-T-TG--GATA--T--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTT-A--GCTTGCTTT--TGAATA--T------CTAATCTCAACAA
gi|6 : tGACACTGCATTGGC-TGCCAGTTGCGCAACGCA-C------TGAATACAAAATT-CTCCT----ACA--TACATAC------AAAGCAATTCACAACATTTCG-----CCACAATACATCGAGGAAC-TC-AT-TCA-CATT----TACCAACCAG-G-GC-GATT-TCTAA-GATCAGAAA-ACAAACAGG-C-GCTGGT---AAAAA--------CAAAATTTCGA---A--CGTTCACGT-C---TGGCAACA-GACGATT--AGA--TG-T----GGCTGCAA-CATCCC-TCTGG-AA---CTCTTTATCATC------ACATCTC-CATTC-ATGTC-TA-TCA-G-TG--CATACTT--TTAAA-AA-CA--TC--T--TAAA-AT-TCATATTTTTAA--G
gi|7 : AGTGTCGCA-T------TCAATTCAAAGTTTCTTGT----GCA--TACCTGC------AAGGC-GTTCGCAGCAT--CG-G-ACCTACT-T-CCTTAGCGAAC-TG-AT-CCAACATTA---TTCTAACCGT-C-GCGGAAC-TTGAG-ACTCAGAAACAAAAAC----T-GCTTTT---AAAAG-TTCTTCTCGGAC-CTAGA---A--CG---AAGTCCAATTGGAAACA-GACACTTC--GAC-TA-TCTTGGGC--CAA-CA---C-TGTGG-AA---TGCCTTACCA-TTG----GGATTGC-CGT-T-GTGCCAAA-TCA-T-TGGCCACATTT--TTTAA-AC-CAACTC--C--TAAAGaaagcttt
gi|8 : GTGTCGCAAT------GCAATTCAAAGTT-CTTGT----GCA--TAC-TGC------AAGGC-GTTCGCAGCAT--CG-GAACCTACT-T-CCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTCC-GC-GAAC-TTGAG-ACTCAGAAACAAAAAC----T-GC-TTT---AAAAGTTTT--CTCGGA--CTAGA---A--CG---AAGTCCAATTGGAAACA-GACACTTTC-GAC-TA-TCTTGGGC--CAA-CA---C-TGTGG-AA---TGCCTTACCA-TTG----GGATTGC-CGT-T-GTGCCAAA-TCA-T-TG--CACA--T--TTTTA-AACCAACTCAAC--TAAAG
gi|9 : --CTCGTA--CTAGA---A--CG---AAGT-CATTTGGAAGCA-GACGCTTT--GAC-TA-TTTCACGC--CAA-TA---C-TGTGG-GA---CGCCTTACCA-TTA----GGATTACGG---T-GTGCCCCA-TCA-C-TG--GATA--T--TTCTA-AA-CAA-------------AC----CTTCTTTAA--ACTTGCTTT--T---AATGT------CTAATT-CAACAAGA-C-A-TTCTTAATTTTTTGG-TGAAAATTTATA----TAT-TAG-AC--A--TTCT-TTTG-TAGCA-ATTATCATTAAATGCTCATTTTTGCT--TACATGTATGTG--TGT-ATATGTAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTTCGGACCTAGAAACAGCAAGCGTAAAATAGCTAATACCAACATTACTTTTGATGGATGTCTCATTAAGTGTGTTCCGGTAGTCAAAAACTTGGGGACTTATTTTGATGAAACCTAAGCATGGGAAAACACCTGTCTGCAGTGGCCAAGTCTTGTTATTTCC
Unaligned ( gi|16 ): CAGCATGGCCCTAACTGGAAACTGTGTTACCATCGGGACAAGTCTTCATTCATGGTCGCAATACAGTGTACACTTAAGAAAACATAGCTTAAAACGGCATCTTTTTTAAGATGACCTTTTCGGTTTACAG
Unaligned ( gi|24 ): TGGGGGCTTATTTTGGATGAAACTAAGCATGGAAAACATCTGTCTGCACTCTGAGTGGCCAAGTCTTGTTATTTTCCAGTTGAGGAACATAGGAAGAATCAGAT
Unaligned ( gi|35 ): TAATTCCAATAAGGACAGTCTTAAGAAAAAATTTTAGAAAAATTGAGGGATTT
Unaligned ( gi|36 ): AAAATCTCGAACATCCACGTATGGCAACAGACGATT
Alignments
lowQualScore : 222 11 11 11 222 11 22222222 1111 111111 1 111 11 1 1 111 111 111 111111 22222 11 333333333333333 2222 11111 1111 11 11
lowQualScore : 2 444 8 8 6 99 55 7 44 555 1 5 5 5 5 44 5 00000000 0 5 1 2222 77 0 5 666666 7 2 77 5 5 5 2 0 5 5 5 1 000 55 1 5 1 7 333 666 3 1 4 222 99 55 4 55 8888888 888 4 99 4 3 55 3 66666 7777 0 3 333333 1 77777 3 3 555 666 44 55 1 3 6 66666666 1 4 0 66 0 77 333333333333333 99 5 999 3 999 5 2222 77 3 55555 3 99 3 9999 4 3 3 2 00 5 5 5 5 4 4 8 00 4 3 1 6
lowQualScore : . ... . . . .. .. . .. ... . . . . . .. . ........ . . . .... .. . . ...... . . .. . . . . . . . . . ... .. . . . . ... ... . . . ... .. .. . .. ....... ... . .. . . .. . ..... .... . . ...... . ..... . . ... ... .. .. . . . ........ . . . .. . .. ............... .. . ... . ... . .... .. . ..... . .. . .... . . . . .. . . . . . . . .. . . . .
lowQualScore : 5 000 0 0 7 11 77 3 00 777 0 7 7 0 0 44 0 22222222 1 7 4 1111 99 7 7 444444 9 7 99 7 7 7 0 1 7 7 7 7 000 77 4 7 7 1 111 444 2 8 4 222 55 55 0 55 1111111 999 0 55 0 6 00 3 00000 1111 7 3 333333 0 88888 3 3 444 000 22 00 8 3 7 22222222 4 4 7 11 7 99 666666666666666 00 7 444 9 666 0 2222 11 3 44444 3 11 3 6666 1 3 6 3 66 7 0 0 0 4 4 4 66 4 2 7 7
consensus : AAATTACAACA-GGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGTTATG--ATCATATT-ACACCGG-TTATNG-T-A-GAC-CTTCATTGGCCTTCCGGTAGAGTATCGCA-T------TCAATTCAAAGTT-CTCGT----GCA--TACCTA-CAA------GGCCGTTCGCAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AAC-TTGAG-AATCAGAAA-AAAAACAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-GACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAACGCCTTACCA-TT-G----GGATTAC-C---T-GTGCCAAA-TCA-T-TG--NACATTT--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTTAA--GCTTGCTTT--T---TAT-T------CTAATTCCAACAAGA-C-A-TTCTTAGTTTTTAG-G-TGAAAATTTATAT---TAC-TAA-ACA-A--TTCT-TTTG-TAGCG-ACTATCATTGAATGCTCACTTTTA----TGCATGTATGTGTGTATA-TATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGATTTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTATT-TATT
Reference ( family-1138 ) : AAATTACAACA-G-TACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGTTATG--ATCATATT-ACACCGG-TTATNG-T-A-GAC-CTTCATTGGCCTTCCGGTAGAGTATCGCA-T------TCAATTCAAAGTT-CTCGT----GCA--TACCTA-CAA------GGCCGTTCGCAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AAC-TTGAG-AATCAGAAA-AAAAACAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-GACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAACGCCTTACCA-TT-G----GGATTAC-C---T-GTGCCAAA-TCA-T-TG--NACATTT--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTTAA--GCTTGCTTT--T---TAT-T------CTAATTCCAACAAGA-C-A-TTCTTAGTTTTTAG-G-TGAAAATTTATAT---TAC-TAA-ACA-A--TTCT-TTTG-TAGCG-ACTATCATTGAATGCTCACTTTTA----TGCATGTATGTGTGTGTA-TATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGATTTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTATT-TATT
gi|1 : AAAATACAA-A-A-TACAAAATACTTG-CAGCAAGGATGCATCAGTCGCACTAAAAAGTTATG--ATCATATTCACACCGGCTTTTCG-T-AAGAC-CTTCATTGGCCTTCCGGTAGAGTATC-CATT------TCAATTCAAAGTT-CTTGT----GCAATCACCTACCAA------GGCCGTTCACAGCAT--CGCGA-CCTACG-TACCTTAGCGAACTTGCATGCCAAC-TTACATTCCT--CCGTCGGCG-AACATTGAGCAATCAGAAA-AAAAACAGGAT-GCTTTTTCAAAAAGTTC--CTCGGA--C-TAGGAACC---G---AAGTC-AATTGGAAACAGGACGCTCTCGGACTTATCTTGG-GC--CAAGCA---CGTGTG----G-ATGCC-TACCATTT-G----GGATTGC-C---T-GTGCCAAA-TCA-T-TG--CACATTTTCTTTTA-AA-CAACTC--CCTTAAAGAC-TCATTTCTTTAAGGGCTTGCCTT--T---TAT-T------CTAATTCCAATAAGAGC-AGTTCTTAGATTTTAG-ATTGAGGATTTATAT---TAC-TTA-ACA-A--TTTT-TTTA-TAGCG--TTATCCTTGTATGCTCACTTTTA----TGCATGTATAT-TAT-CATTATATAT--TGCATGTAA-A-AGCGCTTT-AGCAGATTTTGACTTTGATTAGGGC-GC-ATACAAATTTTAGTATTATTATT-TATT
gi|10 : CAATTTTAA---TGCAGG-ACATTT-TGTA-TGCGT-T--TG-ATGT-G-A-TGCACTTT-AG-ATATTTTAAA-TTCATTAGGGT-GCTATACAAATTTTAGTGTTGT
gi|12 : tcagaaaatgactattcttagaattttgttttacagaagataagttctgtcagagttttgatagcacataata-CA---C-TATG----GAATGCTTTACTG-GT-T----GGATTAC-C-----GTGCAGAA-TCAATATG--GACATTT--C---A-AA-CAACAT--C--TCGAGAC-TCATTTCTTTAA--CATTGATTT--TAA-TAT-T-------TAA
gi|13 : aggactcaactaagacttgtggaaccattcagtgccttAA-ACA-AGATTTT-CTT--TACCGTATTATCATTGAATGCTCACTTTTA----TGTATGTATGTATGTATA-AATATATA-NN-NNNN-N-N-NNNNNNNN-NN-NNNNNNNNN--NNNNNNNNNNN-NNNNNNNNNNNTTTAGTATTATTATT-TATc
gi|14 : gcAC-TAA-ACA-A--ATTT-TTTA-TAGCG-ATTATCATTGTATGCTCACTTTTA----TGCATGTATGTATGTATA-TATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGA-TTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTAT
gi|15 : T--TTCTATAA-CGACT---------AGACCTCATTTCATTAG--GCTTGCTTT--T---T-T-TAAAAAATTAA-CCCAAC-AGA-CAA-TTCTTAG-TTTTAG-G-TGAAAA-TTATA------------------------------AGCA-ACTATCATTGAATGCTCACTTTagtatt
gi|17 : actta---TAC-TAA-ACA-AA-TTCT-TTTA-TAGCG-ATTATTATTGAA-----------A----TGCATGTATGTATGTATA-TATATA---TA-ATGT-A-A-AGCGCTTT-AG-AGA-TTTGA--TTGATGAGGGCGGCTATACAA--TTTAGTATTATTA-T-TATTacttatatat
gi|18 : taTAATTC-AACAAGA-C---TTCTTA-TTTTTAGTG-TGAAA-TTTATATA--TCC-AGA-GCATA--TTCTATTTG-TAGCA-ACTATCATTGAATGCTCACTTTGACTTTTGTATGTATGTGTGTGCA-TGTATGT--a
gi|19 : AG-AATCAGAAA-A----CAGGATTGCTTTTT--AAAAGTTC--CTCGAA--C-TAGGA--CCACG---AAGTC-AGATGGAAACA-GACGCTTT--GAC-CATCTTGG-GC--CAA-CA---G-TGTG----GAATGGCCTA-CA-TC-G----GGa
gi|2 : aAAATTACAACA-GGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGT-ATG--ATCATATC-ACACCGG-TATTAG-T-A-GAC-CTTCATTGGC-TTCCGGTAGAGTATCGCA-TAACCATTCCATTCAAAGTT-CTTGT----GCA--TACCTA-CAA------GGCCGTTCACAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AACGTTGAG--ATCAG-----AAAACAGGAT-GCTTTT---AAAAGTTC--CTCGAA--C-TAGAA--C---G---AAGTC-AACTGGAAACA-GACGCTTT--GAC-CATCTTGG-GC--CAA-CA---G-TGTG----GAATGCCTTACCA-TT-A----GGATTATGT---T-GTGCCAAA-TCA-T-t
gi|20 : gttattccagccgaggaatatacggggaatcaagaaactctcgacgatgatacaggcaaaacatctnnnnnnnnnnnnnnnnnnnnnnnnncaatacatgctctcgtcacatcaaaactagactatgctaatgcattgttacttggccttccaaacagtgctaccaacAGGATG-ATCAGTCGCACTAAAAAG-TATG--AT
gi|21 : caaaatgacatccgaatggattacaacatggcaacttaatactgcaacataaaaacaaattatttagtagttacttttgaattatcAT-GCTTTT---AAAATTTC--CTCAGC--T-TAGA-------------GTC-ATTAAGAAACA-GACACTTC--GAT-TATTTTTTCGT--CAA-TA---T-TGTG----GAACACCTTTCCA-TT-A----GGTTTACGT---T-GTGCCAAA-TAA-C-TG--GA
gi|22 : CTATCATTGAATGTTCACTTTTA----TGCATGTATGTATGTATA-TATATATAGTA-ATGT-A-A-AGCGCTTT-AG-AGA-TTTGA--TTGATTAGTGC-GCTATACAAATTTTAGTATTA-TATT-
gi|23 : TA-AA-CAAACC--C--CAAAGA----------------G-TTGCTTT--T---AATAT------CTAATTT-AATAAGA-C-A-TTCTTAGCTTTTAG-G-TGAAAATTTATACCGGTATATAAGACATA--TTCT-TTT--TAGCA-ACTACCata
gi|25 : TACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAG-TATGAAATCA-ATT--CACCGG--TATAG-T-A-GAC-CTTCATTGGCCTCACGGTAGAGTA
gi|26 : TG----TGCGCGTACTTGCGTGCG-TGT-T-T--TA-ATGT-ATATAGCGTTTT-AG-AGATTTTGA--TTGAATAGGGC-ACTATACAA
gi|27 : tgcgtgT---TA--TAG-ACATA--TTCT-TTTG-TAGCA-ACTATCATTGAATGCTAACTTTTACT--TACATGTGTATGTGTGTG-TATGTAT--
gi|28 : ------CTAATTC-AACAAGA-T-A-TTCTTAGTTTTTAG-A-TGAAAATTTATA----TAA-TAG-AAATA--TTTT-TTTG-CAGCA-ACTATCATTAAgaa
gi|29 : -GC--CAA-AG---T-TGTAAAAAGGATGCCTTACCA-TT-A----GGATTAC-G---T-GTGCCAAA-TCA-T-TG--CACA--T--TTTTA-AA-CAA
gi|3 : tcAAATTACAACATG-TACAAAATACT-G-CAGCAGTGACG-ATCAGTCGCACTAAAAAGT-ATG--ATCATATT-ACACCCG-T-ATTG-TTA-GAC-CTTCATTGGC-TTCCAGTGAAGTATTGCA-T------TAAATTCGAAGTT-CTCATAATTGCA--TACCTA-CAA------GGCCGTTCTCTGATT--CG-GA-CCTACT-T----T-GCAAAA-TG-AT-TCAACTTTA---TTCT--CTGTT-GCG-AACATTGTG-A-TCAGAAA-A----CAGAAT-GCTTTT---AACAGTTC--CTCAGA--C-TAGAA--C---A---AAGTC-A-TTGGAAACA-GACGTTTT--GAC-TATTTTGT-GT--CAA-TA---C-TGTG----GAACGCCTTACCA-TTTGATTTGGATTAT-T---TTGTGCCAAAATCA-C-TG--AATATTT--T--TA-AA-CAAACC--C--TAAAGAT-TCCTTTCTTTAA--GCTTGCTTTTAT---TAT-T-------TAATTCC-ACAAGA-C-A-TTCTTAGTTTTTAG-C-TGAAAA-TTATAT---TAT-AAG-AC--A--TACT-TTTGTTAGCA-ACTATCATTGAATGCTCACTTTTA------CATAT
gi|30 : gctagcaac---TAC-TAA-ACA-A--ATTT-TTTA-TAGCG-ATTATCATTGAATGCTCACTTTTA----TGCATGTATGTATGTATA-TATATA
gi|31 : aACTAAAATGTC-TG--GTCATATT-ACGCCGG-T-ATTGAT-A-TAC-CTTCATTGG-CTTCCAGTACAGTATCGCA-G------TCA
gi|32 : ATT-C-C---T-G-GCCA---TCA-G-TG--TACACTC--TTCTA-AAATAAATC--C--TAAA-AC-TCGTCTTTTTAA--G
gi|33 : ccT-A-A-AGCACTTTTGG-GGATTTTGA--CTGATTCGGGC-ACTGTACAAATTTTAGTATTG-TATTGTATaaggt
gi|34 : tGCTTT-AG-AGATTT-GA--TTGATTAGGGC-GCTATTCACATTTTAGTATTATTAAT-TATT
gi|4 : AAATTACAACG-GGTACAATATACT-GGCAGCAAGGATG-ATCAGTCGCACTAAAAAG-TATGAAATCA-ATT--CACCGG--TATTG-T-A-GAC-CTTCATTGGCCT--CGGTatt
gi|5 : gtgttcggactctcgaaacaaggaagcgtaaaataagctaataccagcattactttcgatggatgtctcattaagtctgttccatagtcaaaactttggggtccttattttgaatgaaaaatctaagcatgggaaaacactgtctgcagtggtcaagtttcttgttatttccagttgaggaaacattagagagatcagattacctcatcgacgatgatacatgcaaaacattaatactgctgttctcgtacatcaaagactagactatgctaatgcattgttacttggcctgtccaaacagtgctacccaac-T-A-GAC-CTTCATTGG--------TAGAGTATCGCA-T------TCAATTC--------TTAT----GCA--TACCTA-CAACTACAAGGCCGTTTACAGCAT--CT-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-A-----------TCAGAAA-A----CAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-AACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAATGCCTTACCA-TT-A----GGATTACAT---T-GTGCCAAA-TCA-T-TG--GATA--T--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTT-A--GCTTGCTTT--TGAATA--T------CTAATCTCAACAA
gi|6 : -GACACTGCATTGGC-TGCCAGTTGCGCAACGCA-C------TGAATACAAAATT-CTCCT----ACA--TACATA-CAA------AGCAATTCACAACATTTCG-----CCACAATACATCGAGGAAC-TC-AT-TCA-CATT----TACCAACCAGG-GCG-ATT-TCTAA-GATCAGAAA-ACAAACAGG-C-GCTGGT---AAAAA-------CAAAATT-TCGAA--C---GTTCACGTC----TGGCAACA-GACGATTA--GA--TGT----G-GCTGCAA-CATCCC-TCTG----GAACTCTTTATCA-TC------ACATCTC-CATTC-ATGTC-TA-TCA-G-TG--CATACTT--TTAAA-AA-CA--TC--T--TAAA-AT-TCATATTTTTAA--G
gi|7 : AGTGTCGCA-T------TCAATTCAAAGTTTCTTGT----GCA--TACCTG-CAA------GGC-GTTCGCAGCAT--CG-GA-CCTACT-T-CCTTAGCGAAC-TG-AT-CCAACATTA---TTCTAACCGTC-GCGGAAC-TTGAG-ACTCAGAAACAAAAAC----T-GCTTTT---AAAAGTTCTTCTCGGA--CCTAGAA--C---G---AAGTCCAATTGGAAACA-GACACTTC--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAATGCCTTACCA-TT-G----GGATTGC-CGT-T-GTGCCAAA-TCA-T-TGGCCACATTT--TTTAA-AC-CAACTC--C--TAAAGaaagcttt
gi|8 : GTGTCGCAAT------GCAATTCAAAGTT-CTTGT----GCA--TAC-TG-CAA------GGC-GTTCGCAGCAT--CG-GAACCTACT-T-CCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTCCGCG-AAC-TTGAG-ACTCAGAAACAAAAAC----T-GCTTT----AAAAGTTTT-CTCGGA--C-TAGAA--C---G---AAGTCCAATTGGAAACA-GACACTTTC-GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAATGCCTTACCA-TT-G----GGATTGC-CGT-T-GTGCCAAA-TCA-T-TG--CACA--T--TTTTA-AACCAACTCAAC--TAAAG
gi|9 : --CTCGTA--C-TAGAA--C---G---AAGTC-ATTTGGAAGCA-GACGCTTT--GAC-TATTTCAC-GC--CAA-TA---C-TGTG----GGACGCCTTACCA-TT-A----GGATTACGG---T-GTGCCCCA-TCA-C-TG--GATA--T--TTCTA-AA-CAA-------------AC----CTTCTTTAA--ACTTGCTTT--T---AATGT------CTAATT-CAACAAGA-C-A-TTCTTAATTTTTTG-G-TGAAAATTTATA----TAT-TAG-AC--A--TTCT-TTTG-TAGCA-ATTATCATTAAATGCTCATTTTTGCT--TACATGTATGTGTGTATA-TGTAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTTCGGACCTAGAAACAGCAAGCGTAAAATAGCTAATACCAACATTACTTTTGATGGATGTCTCATTAAGTGTGTTCCGGTAGTCAAAAACTTGGGGACTTATTTTGATGAAACCTAAGCATGGGAAAACACCTGTCTGCAGTGGCCAAGTCTTGTTATTTCC
Unaligned ( gi|16 ): CAGCATGGCCCTAACTGGAAACTGTGTTACCATCGGGACAAGTCTTCATTCATGGTCGCAATACAGTGTACACTTAAGAAAACATAGCTTAAAACGGCATCTTTTTTAAGATGACCTTTTCGGTTTACAG
Unaligned ( gi|24 ): TGGGGGCTTATTTTGGATGAAACTAAGCATGGAAAACATCTGTCTGCACTCTGAGTGGCCAAGTCTTGTTATTTTCCAGTTGAGGAACATAGGAAGAATCAGAT
Unaligned ( gi|35 ): TAATTCCAATAAGGACAGTCTTAAGAAAAAATTTTAGAAAAATTGAGGGATTT
Unaligned ( gi|36 ): AAAATCTCGAACATCCACGTATGGCAACAGACGATT
Alignments
lowQualScore : 11 11 11 222 11 22222222 1111 111111 1 111 11 1 1 111 111 111 111111 22222 11 333333333333333 2222 11111 1111 111111 11 11
lowQualScore : 8 8 8 6 99 55 7 44 555 1 5 5 5 5 44 5 00000000 0 5 1 2222 77 0 5 666666 7 2 77 5 5 5 2 0 5 5 5 1 000 55 1 5 1 7 333 666 3 1 4 222 99 55 4 55 8888888 888 4 99 4 3 55 3 66666 7777 0 3 333333 1 77777 3 3 555 666 44 55 1 3 6 66666666 1 4 0 66 0 77 333333333333333 99 5 999 3 999 5 2222 77 3 55555 3 99 3 9999 3 6 3 000000 00 5 5 5 5 4 4 8 00 4 3 1 6
lowQualScore : . . . . .. .. . .. ... . . . . . .. . ........ . . . .... .. . . ...... . . .. . . . . . . . . . ... .. . . . . ... ... . . . ... .. .. . .. ....... ... . .. . . .. . ..... .... . . ...... . ..... . . ... ... .. .. . . . ........ . . . .. . .. ............... .. . ... . ... . .... .. . ..... . .. . .... . . . ...... .. . . . . . . . .. . . . .
lowQualScore : 8 0 0 7 11 77 3 00 777 0 7 7 0 0 44 0 22222222 1 7 4 1111 99 7 7 444444 9 7 99 7 7 7 0 1 7 7 7 7 000 77 4 7 7 1 111 444 2 8 4 222 55 55 0 55 1111111 999 0 55 0 6 00 3 00000 1111 7 3 333333 0 88888 3 3 444 000 22 00 8 3 7 22222222 4 4 7 11 7 99 666666666666666 00 7 444 9 666 0 2222 11 3 44444 3 11 3 6666 3 4 6 555555 66 7 0 0 0 4 4 4 66 4 2 7 7
consensus : AAATTACAACAGGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGTTATG--ATCATATT-ACACCGG-TTATNG-T-A-GAC-CTTCATTGGCCTTCCGGTAGAGTATCGCA-T------TCAATTCAAAGTT-CTCGT----GCA--TACCTA-CAA------GGCCGTTCGCAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AAC-TTGAG-AATCAGAAA-AAAAACAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-GACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAACGCCTTACCA-TT-G----GGATTAC-C---T-GTGCCAAA-TCA-T-TG--NACATTT--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTTAA--GCTTGCTTT--T---TAT-T------CTAATTCCAACAAGA-C-A-TTCTTAGTTTTTAG-G-TGAAAATTTATAT---TAC-TAA-ACA-A--TTCT-TTTG-TAGCG-ACTATCATTGAATGCTCACTTTTA----TGCATG-TATGTGTGT-A------TATATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGATTTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTATT-TATT
Reference ( family-1138 ) : AAATTACAACAGGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGTTATG--ATCATATT-ACACCGG-TTATNG-T-A-GAC-CTTCATTGGCCTTCCGGTAGAGTATCGCA-T------TCAATTCAAAGTT-CTCGT----GCA--TACCTA-CAA------GGCCGTTCGCAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AAC-TTGAG-AATCAGAAA-AAAAACAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-GACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAACGCCTTACCA-TT-G----GGATTAC-C---T-GTGCCAAA-TCA-T-TG--NACATTT--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTTAA--GCTTGCTTT--T---TAT-T------CTAATTCCAACAAGA-C-A-TTCTTAGTTTTTAG-G-TGAAAATTTATAT---TAC-TAA-ACA-A--TTCT-TTTG-TAGCG-ACTATCATTGAATGCTCACTTTTA----TGCATG-TATGTGTGT-A------TATATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGATTTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTATT-TATT
gi|1 : AAAATACAAAA--TACAAAATACTTG-CAGCAAGGATGCATCAGTCGCACTAAAAAGTTATG--ATCATATTCACACCGGCTTTTCG-T-AAGAC-CTTCATTGGCCTTCCGGTAGAGTATC-CATT------TCAATTCAAAGTT-CTTGT----GCAATCACCTACCAA------GGCCGTTCACAGCAT--CGCGA-CCTACG-TACCTTAGCGAACTTGCATGCCAAC-TTACATTCCT--CCGTCGGCG-AACATTGAGCAATCAGAAA-AAAAACAGGAT-GCTTTTTCAAAAAGTTC--CTCGGA--C-TAGGAACC---G---AAGTC-AATTGGAAACAGGACGCTCTCGGACTTATCTTGG-GC--CAAGCA---CGTGTG----G-ATGCC-TACCATTT-G----GGATTGC-C---T-GTGCCAAA-TCA-T-TG--CACATTTTCTTTTA-AA-CAACTC--CCTTAAAGAC-TCATTTCTTTAAGGGCTTGCCTT--T---TAT-T------CTAATTCCAATAAGAGC-AGTTCTTAGATTTTAG-ATTGAGGATTTATAT---TAC-TTA-ACA-A--TTTT-TTTA-TAGCG--TTATCCTTGTATGCTCACTTTTA----TGCATG-TATAT-TATCA------T-TATATAT--TGCATGTAA-A-AGCGCTTT-AGCAGATTTTGACTTTGATTAGGGC-GC-ATACAAATTTTAGTATTATTATT-TATT
gi|10 : CAATTTTAA---TGCAGGACATTT-TGT-A------TGCGT---T--TG-ATGT-G-A-TGCACTTT-AG-ATATTTTAAA-TTCATTAGGGT-GCTATACAAATTTTAGTGTTGT
gi|12 : tcagaaaatgactattcttagaattttgttttacagaagataagttctgtcagagttttgatagcacataata-CA---C-TATG----GAATGCTTTACTG-GT-T----GGATTAC-C-----GTGCAGAA-TCAATATG--GACATTT--C---A-AA-CAACAT--C--TCGAGAC-TCATTTCTTTAA--CATTGATTT--TAA-TAT-T-------TAA
gi|13 : aggactcaactaagacttgtggaaccattcagtgccttAA-ACA-AGATTTT-CTT--TACCGTATTATCATTGAATGCTCACTTTTA----TGTATG-TATGTATGT-A------TAAATATATA-NN-NNNN-N-N-NNNNNNNN-NN-NNNNNNNNN--NNNNNNNNNNN-NNNNNNNNNNNTTTAGTATTATTATT-TATc
gi|14 : gcAC-TAA-ACA-A--ATTT-TTTA-TAGCG-ATTATCATTGTATGCTCACTTTTA----TGCATG-TATGTATGT-A------TATATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGA-TTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTAT
gi|15 : T--TTCTATAA-CGACT---------AGACCTCATTTCATTAG--GCTTGCTTT--T---T-T-TAAAAAATTAA-CCCAAC-AGA-CAA-TTCTTAG-TTTTAG-G-TGAAAA-TTATA------------------------------AGCA-ACTATCATTGAATGCTCACTTTagtatt
gi|17 : actta---TAC-TAA-ACA-AA-TTCT-TTTA-TAGCG-ATTATTATTGAA-----------A----TGCATG-TATGTATGT-A------TATATATA---TA-ATGT-A-A-AGCGCTTT-AG-AGA-TTTGA--TTGATGAGGGCGGCTATACAA--TTTAGTATTATTA-T-TATTacttatatat
gi|18 : taTAATTC-AACAAGA-C---TTCTTA-TTTTTAGTG-TGAAA-TTTATATA--TCC-AGA-GCATA--TTCTATTTG-TAGCA-ACTATCATTGAATGCTCACTTTGACTTTTGTATG-TATGTGTGT-G------CATGTATGT--a
gi|19 : AG-AATCAGAAA-A----CAGGATTGCTTTTT--AAAAGTTC--CTCGAA--C-TAGGA--CCACG---AAGTC-AGATGGAAACA-GACGCTTT--GAC-CATCTTGG-GC--CAA-CA---G-TGTG----GAATGGCCTA-CA-TC-G----GGa
gi|2 : aAAATTACAACAGGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGT-ATG--ATCATATC-ACACCGG-TATTAG-T-A-GAC-CTTCATTGGC-TTCCGGTAGAGTATCGCA-TAACCATTCCATTCAAAGTT-CTTGT----GCA--TACCTA-CAA------GGCCGTTCACAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AACGTTGAG--ATCAG-----AAAACAGGAT-GCTTTT---AAAAGTTC--CTCGAA--C-TAGAA--C---G---AAGTC-AACTGGAAACA-GACGCTTT--GAC-CATCTTGG-GC--CAA-CA---G-TGTG----GAATGCCTTACCA-TT-A----GGATTATGT---T-GTGCCAAA-TCA-T-t
gi|20 : gttattccagccgaggaatatacggggaatcaagaaactctcgacgatgatacaggcaaaacatctnnnnnnnnnnnnnnnnnnnnnnnnncaatacatgctctcgtcacatcaaaactagactatgctaatgcattgttacttggccttccaaacagtgctaccaacAGGATG-ATCAGTCGCACTAAAAAG-TATG--AT
gi|21 : caaaatgacatccgaatggattacaacatggcaacttaatactgcaacataaaaacaaattatttagtagttacttttgaattatcAT-GCTTTT---AAAATTTC--CTCAGC--T-TAGA-------------GTC-ATTAAGAAACA-GACACTTC--GAT-TATTTTTTCGT--CAA-TA---T-TGTG----GAACACCTTTCCA-TT-A----GGTTTACGT---T-GTGCCAAA-TAA-C-TG--GA
gi|22 : CTATCATTGAATGTTCACTTTTA----TGCATG-TATGTATGT-A------TATATATATAGTA-ATGT-A-A-AGCGCTTT-AG-AGA-TTTGA--TTGATTAGTGC-GCTATACAAATTTTAGTATTA-TATT-
gi|23 : TA-AA-CAAACC--C--CAAAGA----------------G-TTGCTTT--T---AATAT------CTAATTT-AATAAGA-C-A-TTCTTAGCTTTTAG-G-TGAAAATTTATACCGGTATATAAGACATA--TTCT-TTT--TAGCA-ACTACCata
gi|25 : TACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAG-TATGAAATCA-ATT--CACCGG--TATAG-T-A-GAC-CTTCATTGGCCTCACGGTAGAGTA
gi|26 : ----TGCGTG-TGTGCGCGT-ACTTGCGTGCGTGTTT--TA-ATGT-ATATAGCGTTTT-AG-AGATTTTGA--TTGAATAGGGC-ACTATACAA
gi|27 : T---TA--TAG-ACATA--TTCT-TTTG-TAGCA-ACTATCATTGAATGCTAACTTTTACT--TACATG-TGTATGTGT-G------TGTATGTAT--
gi|28 : ------CTAATTC-AACAAGA-T-A-TTCTTAGTTTTTAG-A-TGAAAATTTATA----TAA-TAG-AAATA--TTTT-TTTG-CAGCA-ACTATCATTAAgaa
gi|29 : -GC--CAA-AG---T-TGTAAAAAGGATGCCTTACCA-TT-A----GGATTAC-G---T-GTGCCAAA-TCA-T-TG--CACA--T--TTTTA-AA-CAA
gi|3 : tcAAATTACAACATGTACAAAATACT-G-CAGCAGTGACG-ATCAGTCGCACTAAAAAGT-ATG--ATCATATT-ACACCCG-T-ATTG-TTA-GAC-CTTCATTGGC-TTCCAGTGAAGTATTGCA-T------TAAATTCGAAGTT-CTCATAATTGCA--TACCTA-CAA------GGCCGTTCTCTGATT--CG-GA-CCTACT-T----T-GCAAAA-TG-AT-TCAACTTTA---TTCT--CTGTT-GCG-AACATTGTG-A-TCAGAAA-A----CAGAAT-GCTTTT---AACAGTTC--CTCAGA--C-TAGAA--C---A---AAGTC-A-TTGGAAACA-GACGTTTT--GAC-TATTTTGT-GT--CAA-TA---C-TGTG----GAACGCCTTACCA-TTTGATTTGGATTAT-T---TTGTGCCAAAATCA-C-TG--AATATTT--T--TA-AA-CAAACC--C--TAAAGAT-TCCTTTCTTTAA--GCTTGCTTTTAT---TAT-T-------TAATTCC-ACAAGA-C-A-TTCTTAGTTTTTAG-C-TGAAAA-TTATAT---TAT-AAG-AC--A--TACT-TTTGTTAGCA-ACTATCATTGAATGCTCACTTTTA------CATA-T
gi|30 : gctagcaac---TAC-TAA-ACA-A--ATTT-TTTA-TAGCG-ATTATCATTGAATGCTCACTTTTA----TGCATG-TATGTATGT-A------TATATATA
gi|31 : aACTAAAATGTC-TG--GTCATATT-ACGCCGG-T-ATTGAT-A-TAC-CTTCATTGG-CTTCCAGTACAGTATCGCA-G------TCA
gi|32 : ATT-C-C---T-G-GCCA---TCA-G-TG--TACACTC--TTCTA-AAATAAATC--C--TAAA-AC-TCGTCTTTTTAA--G
gi|33 : ccT-A-A-AGCACTTTTGG-GGATTTTGA--CTGATTCGGGC-ACTGTACAAATTTTAGTATTG-TATTGTATaaggt
gi|34 : tGCTTT-AG-AGATTT-GA--TTGATTAGGGC-GCTATTCACATTTTAGTATTATTAAT-TATT
gi|4 : AAATTACAACGGGTACAATATACT-GGCAGCAAGGATG-ATCAGTCGCACTAAAAAG-TATGAAATCA-ATT--CACCGG--TATTG-T-A-GAC-CTTCATTGGCCT--CGGTatt
gi|5 : gtgttcggactctcgaaacaaggaagcgtaaaataagctaataccagcattactttcgatggatgtctcattaagtctgttccatagtcaaaactttggggtccttattttgaatgaaaaatctaagcatgggaaaacactgtctgcagtggtcaagtttcttgttatttccagttgaggaaacattagagagatcagattacctcatcgacgatgatacatgcaaaacattaatactgctgttctcgtacatcaaagactagactatgctaatgcattgttacttggcctgtccaaacagtgctacccaac-T-A-GAC-CTTCATTGG--------TAGAGTATCGCA-T------TCAATTC--------TTAT----GCA--TACCTA-CAACTACAAGGCCGTTTACAGCAT--CT-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-A-----------TCAGAAA-A----CAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-AACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAATGCCTTACCA-TT-A----GGATTACAT---T-GTGCCAAA-TCA-T-TG--GATA--T--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTT-A--GCTTGCTTT--TGAATA--T------CTAATCTCAACAA
gi|6 : -GACACTGCATTGGC-TGCCAGTTGCGCAACGCA-C------TGAATACAAAATT-CTCCT----ACA--TACATA-CAA------AGCAATTCACAACATTTCG-----CCACAATACATCGAGGAAC-TC-AT-TCA-CATT----TACCAACCAGG-GCG-ATT-TCTAA-GATCAGAAA-ACAAACAGG-C-GCTGGT---AAAAA-------CAAAATT-TCGAA--C---GTTCACGTC----TGGCAACA-GACGATTA--GA--TGT----G-GCTGCAA-CATCCC-TCTG----GAACTCTTTATCA-TC------ACATCTC-CATTC-ATGTC-TA-TCA-G-TG--CATACTT--TTAAA-AA-CA--TC--T--TAAA-AT-TCATATTTTTAA--G
gi|7 : AGTGTCGCA-T------TCAATTCAAAGTTTCTTGT----GCA--TACCTG-CAA------GGC-GTTCGCAGCAT--CG-GA-CCTACT-T-CCTTAGCGAAC-TG-AT-CCAACATTA---TTCTAACCGTC-GCGGAAC-TTGAG-ACTCAGAAACAAAAAC----T-GCTTTT---AAAAGTTCTTCTCGGA--CCTAGAA--C---G---AAGTCCAATTGGAAACA-GACACTTC--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAATGCCTTACCA-TT-G----GGATTGC-CGT-T-GTGCCAAA-TCA-T-TGGCCACATTT--TTTAA-AC-CAACTC--C--TAAAGaaagcttt
gi|8 : GTGTCGCAAT------GCAATTCAAAGTT-CTTGT----GCA--TAC-TG-CAA------GGC-GTTCGCAGCAT--CG-GAACCTACT-T-CCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTCCGCG-AAC-TTGAG-ACTCAGAAACAAAAAC----T-GCTTT----AAAAGTTTT-CTCGGA--C-TAGAA--C---G---AAGTCCAATTGGAAACA-GACACTTTC-GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAATGCCTTACCA-TT-G----GGATTGC-CGT-T-GTGCCAAA-TCA-T-TG--CACA--T--TTTTA-AACCAACTCAAC--TAAAG
gi|9 : --CTCGTA--C-TAGAA--C---G---AAGTC-ATTTGGAAGCA-GACGCTTT--GAC-TATTTCAC-GC--CAA-TA---C-TGTG----GGACGCCTTACCA-TT-A----GGATTACGG---T-GTGCCCCA-TCA-C-TG--GATA--T--TTCTA-AA-CAA-------------AC----CTTCTTTAA--ACTTGCTTT--T---AATGT------CTAATT-CAACAAGA-C-A-TTCTTAATTTTTTG-G-TGAAAATTTATA----TAT-TAG-AC--A--TTCT-TTTG-TAGCA-ATTATCATTAAATGCTCATTTTTGCT--TACATG-TATGTGTGT-A------TATGTAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTTCGGACCTAGAAACAGCAAGCGTAAAATAGCTAATACCAACATTACTTTTGATGGATGTCTCATTAAGTGTGTTCCGGTAGTCAAAAACTTGGGGACTTATTTTGATGAAACCTAAGCATGGGAAAACACCTGTCTGCAGTGGCCAAGTCTTGTTATTTCC
Unaligned ( gi|16 ): CAGCATGGCCCTAACTGGAAACTGTGTTACCATCGGGACAAGTCTTCATTCATGGTCGCAATACAGTGTACACTTAAGAAAACATAGCTTAAAACGGCATCTTTTTTAAGATGACCTTTTCGGTTTACAG
Unaligned ( gi|24 ): TGGGGGCTTATTTTGGATGAAACTAAGCATGGAAAACATCTGTCTGCACTCTGAGTGGCCAAGTCTTGTTATTTTCCAGTTGAGGAACATAGGAAGAATCAGAT
Unaligned ( gi|35 ): TAATTCCAATAAGGACAGTCTTAAGAAAAAATTTTAGAAAAATTGAGGGATTT
Unaligned ( gi|36 ): AAAATCTCGAACATCCACGTATGGCAACAGACGATT
Alignments
lowQualScore : 11 11 11 222 11 22222222 1111 111111 1 111 11 1 1 111 111 111 111111 22222 11 333333333333333 2222 11111 1111 111111 11 11
lowQualScore : 8 8 8 6 99 55 7 44 555 1 5 5 5 5 44 5 00000000 0 5 1 2222 77 0 5 666666 7 2 77 5 5 5 2 0 5 5 5 1 000 55 1 5 1 7 333 666 3 1 4 222 99 55 4 55 8888888 888 4 99 4 3 55 3 66666 7777 0 3 333333 1 77777 3 3 555 666 44 55 1 3 6 66666666 1 4 0 66 0 77 333333333333333 99 5 999 3 999 5 2222 77 3 55555 3 99 3 9999 3 6 3 000000 00 5 5 5 5 4 4 8 00 4 3 1 6
lowQualScore : . . . . .. .. . .. ... . . . . . .. . ........ . . . .... .. . . ...... . . .. . . . . . . . . . ... .. . . . . ... ... . . . ... .. .. . .. ....... ... . .. . . .. . ..... .... . . ...... . ..... . . ... ... .. .. . . . ........ . . . .. . .. ............... .. . ... . ... . .... .. . ..... . .. . .... . . . ...... .. . . . . . . . .. . . . .
lowQualScore : 8 0 0 7 11 77 3 00 777 0 7 7 0 0 44 0 22222222 1 7 4 1111 99 7 7 444444 9 7 99 7 7 7 0 1 7 7 7 7 000 77 4 7 7 1 111 444 2 8 4 222 55 55 0 55 1111111 999 0 55 0 6 00 3 00000 1111 7 3 333333 0 88888 3 3 444 000 22 00 8 3 7 22222222 4 4 7 11 7 99 666666666666666 00 7 444 9 666 0 2222 11 3 44444 3 11 3 6666 3 4 6 555555 66 7 0 0 0 4 4 4 66 4 2 7 7
consensus : AAATTACAACAGGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGTTATG--ATCATATT-ACACCGG-TTATNG-T-A-GAC-CTTCATTGGCCTTCCGGTAGAGTATCGCA-T------TCAATTCAAAGTT-CTCGT----GCA--TACCTA-CAA------GGCCGTTCGCAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AAC-TTGAG-AATCAGAAA-AAAAACAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-GACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAACGCCTTACCA-TT-G----GGATTAC-C---T-GTGCCAAA-TCA-T-TG--NACATTT--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTTAA--GCTTGCTTT--T---TAT-T------CTAATTCCAACAAGA-C-A-TTCTTAGTTTTTAG-G-TGAAAATTTATAT---TAC-TAA-ACA-A--TTCT-TTTG-TAGCG-ACTATCATTGAATGCTCACTTTTA----TGCATG-TATGTGTGT-A------TATATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGATTTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTATT-TATT
Reference ( family-1138 ) : AAATTACAACAGGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGTTATG--ATCATATT-ACACCGG-TTATNG-T-A-GAC-CTTCATTGGCCTTCCGGTAGAGTATCGCA-T------TCAATTCAAAGTT-CTCGT----GCA--TACCTA-CAA------GGCCGTTCGCAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AAC-TTGAG-AATCAGAAA-AAAAACAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-GACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAACGCCTTACCA-TT-G----GGATTAC-C---T-GTGCCAAA-TCA-T-TG--NACATTT--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTTAA--GCTTGCTTT--T---TAT-T------CTAATTCCAACAAGA-C-A-TTCTTAGTTTTTAG-G-TGAAAATTTATAT---TAC-TAA-ACA-A--TTCT-TTTG-TAGCG-ACTATCATTGAATGCTCACTTTTA----TGCATG-TATGTGTGT-A------TATATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGATTTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTATT-TATT
gi|1 : AAAATACAAAA--TACAAAATACTTG-CAGCAAGGATGCATCAGTCGCACTAAAAAGTTATG--ATCATATTCACACCGGCTTTTCG-T-AAGAC-CTTCATTGGCCTTCCGGTAGAGTATC-CATT------TCAATTCAAAGTT-CTTGT----GCAATCACCTACCAA------GGCCGTTCACAGCAT--CGCGA-CCTACG-TACCTTAGCGAACTTGCATGCCAAC-TTACATTCCT--CCGTCGGCG-AACATTGAGCAATCAGAAA-AAAAACAGGAT-GCTTTTTCAAAAAGTTC--CTCGGA--C-TAGGAACC---G---AAGTC-AATTGGAAACAGGACGCTCTCGGACTTATCTTGG-GC--CAAGCA---CGTGTG----G-ATGCC-TACCATTT-G----GGATTGC-C---T-GTGCCAAA-TCA-T-TG--CACATTTTCTTTTA-AA-CAACTC--CCTTAAAGAC-TCATTTCTTTAAGGGCTTGCCTT--T---TAT-T------CTAATTCCAATAAGAGC-AGTTCTTAGATTTTAG-ATTGAGGATTTATAT---TAC-TTA-ACA-A--TTTT-TTTA-TAGCG--TTATCCTTGTATGCTCACTTTTA----TGCATG-TATAT-TATCA------T-TATATAT--TGCATGTAA-A-AGCGCTTT-AGCAGATTTTGACTTTGATTAGGGC-GC-ATACAAATTTTAGTATTATTATT-TATT
gi|10 : CAATTTTAA---TGCAGGACATTT-TGT-A------TGCGT---T--TG-ATGT-G-A-TGCACTTT-AG-ATATTTTAAA-TTCATTAGGGT-GCTATACAAATTTTAGTGTTGT
gi|12 : tcagaaaatgactattcttagaattttgttttacagaagataagttctgtcagagttttgatagcacataata-CA---C-TATG----GAATGCTTTACTG-GT-T----GGATTAC-C-----GTGCAGAA-TCAATATG--GACATTT--C---A-AA-CAACAT--C--TCGAGAC-TCATTTCTTTAA--CATTGATTT--TAA-TAT-T-------TAA
gi|13 : aggactcaactaagacttgtggaaccattcagtgccttAA-ACA-AGATTTT-CTT--TACCGTATTATCATTGAATGCTCACTTTTA----TGTATG-TATGTATGT-A------TAAATATATA-NN-NNNN-N-N-NNNNNNNN-NN-NNNNNNNNN--NNNNNNNNNNN-NNNNNNNNNNNTTTAGTATTATTATT-TATc
gi|14 : gcAC-TAA-ACA-A--ATTT-TTTA-TAGCG-ATTATCATTGTATGCTCACTTTTA----TGCATG-TATGTATGT-A------TATATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGA-TTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTAT
gi|15 : T--TTCTATAA-CGACT---------AGACCTCATTTCATTAG--GCTTGCTTT--T---T-T-TAAAAAATTAA-CCCAAC-AGA-CAA-TTCTTAG-TTTTAG-G-TGAAAA-TTATA------------------------------AGCA-ACTATCATTGAATGCTCACTTTagtatt
gi|17 : actta---TAC-TAA-ACA-AA-TTCT-TTTA-TAGCG-ATTATTATTGAA-----------A----TGCATG-TATGTATGT-A------TATATATA---TA-ATGT-A-A-AGCGCTTT-AG-AGA-TTTGA--TTGATGAGGGCGGCTATACAA--TTTAGTATTATTA-T-TATTacttatatat
gi|18 : taTAATTC-AACAAGA-C---TTCTTA-TTTTTAGTG-TGAAA-TTTATATA--TCC-AGA-GCATA--TTCTATTTG-TAGCA-ACTATCATTGAATGCTCACTTTGACTTTTGTATG-TATGTGTGT-G------CATGTATGT--a
gi|19 : AG-AATCAGAAA-A----CAGGATTGCTTTTT--AAAAGTTC--CTCGAA--C-TAGGA--CCACG---AAGTC-AGATGGAAACA-GACGCTTT--GAC-CATCTTGG-GC--CAA-CA---G-TGTG----GAATGGCCTA-CA-TC-G----GGa
gi|2 : aAAATTACAACAGGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGT-ATG--ATCATATC-ACACCGG-TATTAG-T-A-GAC-CTTCATTGGC-TTCCGGTAGAGTATCGCA-TAACCATTCCATTCAAAGTT-CTTGT----GCA--TACCTA-CAA------GGCCGTTCACAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AACGTTGAG--ATCAG-----AAAACAGGAT-GCTTTT---AAAAGTTC--CTCGAA--C-TAGAA--C---G---AAGTC-AACTGGAAACA-GACGCTTT--GAC-CATCTTGG-GC--CAA-CA---G-TGTG----GAATGCCTTACCA-TT-A----GGATTATGT---T-GTGCCAAA-TCA-T-t
gi|20 : gttattccagccgaggaatatacggggaatcaagaaactctcgacgatgatacaggcaaaacatctnnnnnnnnnnnnnnnnnnnnnnnnncaatacatgctctcgtcacatcaaaactagactatgctaatgcattgttacttggccttccaaacagtgctaccaacAGGATG-ATCAGTCGCACTAAAAAG-TATG--AT
gi|21 : caaaatgacatccgaatggattacaacatggcaacttaatactgcaacataaaaacaaattatttagtagttacttttgaattatcAT-GCTTTT---AAAATTTC--CTCAGC--T-TAGA-------------GTC-ATTAAGAAACA-GACACTTC--GAT-TATTTTTTCGT--CAA-TA---T-TGTG----GAACACCTTTCCA-TT-A----GGTTTACGT---T-GTGCCAAA-TAA-C-TG--GA
gi|22 : CTATCATTGAATGTTCACTTTTA----TGCATG-TATGTATGT-A------TATATATATAGTA-ATGT-A-A-AGCGCTTT-AG-AGA-TTTGA--TTGATTAGTGC-GCTATACAAATTTTAGTATTA-TATT-
gi|23 : TA-AA-CAAACC--C--CAAAGA----------------G-TTGCTTT--T---AATAT------CTAATTT-AATAAGA-C-A-TTCTTAGCTTTTAG-G-TGAAAATTTATACCGGTATATAAGACATA--TTCT-TTT--TAGCA-ACTACCata
gi|25 : TACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAG-TATGAAATCA-ATT--CACCGG--TATAG-T-A-GAC-CTTCATTGGCCTCACGGTAGAGTA
gi|26 : ----TGCGTG-TGTGCGCGT-ACTTGCGTGCGTGTTT--TA-ATGT-ATATAGCGTTTT-AG-AGATTTTGA--TTGAATAGGGC-ACTATACAA
gi|27 : T---TA--TAG-ACATA--TTCT-TTTG-TAGCA-ACTATCATTGAATGCTAACTTTTACT--TACATG-TGTATGTGT-G------TGTATGTAT--
gi|28 : ------CTAATTC-AACAAGA-T-A-TTCTTAGTTTTTAG-A-TGAAAATTTATA----TAA-TAG-AAATA--TTTT-TTTG-CAGCA-ACTATCATTAAgaa
gi|29 : -GC--CAA-AG---T-TGTAAAAAGGATGCCTTACCA-TT-A----GGATTAC-G---T-GTGCCAAA-TCA-T-TG--CACA--T--TTTTA-AA-CAA
gi|3 : tcAAATTACAACATGTACAAAATACT-G-CAGCAGTGACG-ATCAGTCGCACTAAAAAGT-ATG--ATCATATT-ACACCCG-T-ATTG-TTA-GAC-CTTCATTGGC-TTCCAGTGAAGTATTGCA-T------TAAATTCGAAGTT-CTCATAATTGCA--TACCTA-CAA------GGCCGTTCTCTGATT--CG-GA-CCTACT-T----T-GCAAAA-TG-AT-TCAACTTTA---TTCT--CTGTT-GCG-AACATTGTG-A-TCAGAAA-A----CAGAAT-GCTTTT---AACAGTTC--CTCAGA--C-TAGAA--C---A---AAGTC-A-TTGGAAACA-GACGTTTT--GAC-TATTTTGT-GT--CAA-TA---C-TGTG----GAACGCCTTACCA-TTTGATTTGGATTAT-T---TTGTGCCAAAATCA-C-TG--AATATTT--T--TA-AA-CAAACC--C--TAAAGAT-TCCTTTCTTTAA--GCTTGCTTTTAT---TAT-T-------TAATTCC-ACAAGA-C-A-TTCTTAGTTTTTAG-C-TGAAAA-TTATAT---TAT-AAG-AC--A--TACT-TTTGTTAGCA-ACTATCATTGAATGCTCACTTTTA------CATA-T
gi|30 : gctagcaac---TAC-TAA-ACA-A--ATTT-TTTA-TAGCG-ATTATCATTGAATGCTCACTTTTA----TGCATG-TATGTATGT-A------TATATATA
gi|31 : aACTAAAATGTC-TG--GTCATATT-ACGCCGG-T-ATTGAT-A-TAC-CTTCATTGG-CTTCCAGTACAGTATCGCA-G------TCA
gi|32 : ATT-C-C---T-G-GCCA---TCA-G-TG--TACACTC--TTCTA-AAATAAATC--C--TAAA-AC-TCGTCTTTTTAA--G
gi|33 : ccT-A-A-AGCACTTTTGG-GGATTTTGA--CTGATTCGGGC-ACTGTACAAATTTTAGTATTG-TATTGTATaaggt
gi|34 : tGCTTT-AG-AGATTT-GA--TTGATTAGGGC-GCTATTCACATTTTAGTATTATTAAT-TATT
gi|4 : AAATTACAACGGGTACAATATACT-GGCAGCAAGGATG-ATCAGTCGCACTAAAAAG-TATGAAATCA-ATT--CACCGG--TATTG-T-A-GAC-CTTCATTGGCCT--CGGTatt
gi|5 : gtgttcggactctcgaaacaaggaagcgtaaaataagctaataccagcattactttcgatggatgtctcattaagtctgttccatagtcaaaactttggggtccttattttgaatgaaaaatctaagcatgggaaaacactgtctgcagtggtcaagtttcttgttatttccagttgaggaaacattagagagatcagattacctcatcgacgatgatacatgcaaaacattaatactgctgttctcgtacatcaaagactagactatgctaatgcattgttacttggcctgtccaaacagtgctacccaac-T-A-GAC-CTTCATTGG--------TAGAGTATCGCA-T------TCAATTC--------TTAT----GCA--TACCTA-CAACTACAAGGCCGTTTACAGCAT--CT-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-A-----------TCAGAAA-A----CAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-AACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAATGCCTTACCA-TT-A----GGATTACAT---T-GTGCCAAA-TCA-T-TG--GATA--T--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTT-A--GCTTGCTTT--TGAATA--T------CTAATCTCAACAA
gi|6 : -GACACTGCATTGGC-TGCCAGTTGCGCAACGCA-C------TGAATACAAAATT-CTCCT----ACA--TACATA-CAA------AGCAATTCACAACATTTCG-----CCACAATACATCGAGGAAC-TC-AT-TCA-CATT----TACCAACCAGG-GCG-ATT-TCTAA-GATCAGAAA-ACAAACAGG-C-GCTGGT---AAAAA-------CAAAATT-TCGAA--C---GTTCACGTC----TGGCAACA-GACGATTA--GA--TGT----G-GCTGCAA-CATCCC-TCTG----GAACTCTTTATCA-TC------ACATCTC-CATTC-ATGTC-TA-TCA-G-TG--CATACTT--TTAAA-AA-CA--TC--T--TAAA-AT-TCATATTTTTAA--G
gi|7 : AGTGTCGCA-T------TCAATTCAAAGTTTCTTGT----GCA--TACCTG-CAA------GGC-GTTCGCAGCAT--CG-GA-CCTACT-T-CCTTAGCGAAC-TG-AT-CCAACATTA---TTCTAACCGTC-GCGGAAC-TTGAG-ACTCAGAAACAAAAAC----T-GCTTTT---AAAAGTTCTTCTCGGA--CCTAGAA--C---G---AAGTCCAATTGGAAACA-GACACTTC--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAATGCCTTACCA-TT-G----GGATTGC-CGT-T-GTGCCAAA-TCA-T-TGGCCACATTT--TTTAA-AC-CAACTC--C--TAAAGaaagcttt
gi|8 : GTGTCGCAAT------GCAATTCAAAGTT-CTTGT----GCA--TAC-TG-CAA------GGC-GTTCGCAGCAT--CG-GAACCTACT-T-CCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTCCGCG-AAC-TTGAG-ACTCAGAAACAAAAAC----T-GCTTT----AAAAGTTTT-CTCGGA--C-TAGAA--C---G---AAGTCCAATTGGAAACA-GACACTTTC-GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAATGCCTTACCA-TT-G----GGATTGC-CGT-T-GTGCCAAA-TCA-T-TG--CACA--T--TTTTA-AACCAACTCAAC--TAAAG
gi|9 : --CTCGTA--C-TAGAA--C---G---AAGTC-ATTTGGAAGCA-GACGCTTT--GAC-TATTTCAC-GC--CAA-TA---C-TGTG----GGACGCCTTACCA-TT-A----GGATTACGG---T-GTGCCCCA-TCA-C-TG--GATA--T--TTCTA-AA-CAA-------------AC----CTTCTTTAA--ACTTGCTTT--T---AATGT------CTAATT-CAACAAGA-C-A-TTCTTAATTTTTTG-G-TGAAAATTTATA----TAT-TAG-AC--A--TTCT-TTTG-TAGCA-ATTATCATTAAATGCTCATTTTTGCT--TACATG-TATGTGTGT-A------TATGTAT
blockSeqs : G . G . TC AA T A TA A A T . A CC T TAACCAT T T AATT . . CTACAA C A TT . A A A . . . A . AA C G A G AA CAA A A T T TT AT C . CACG CAA . C . C TG . TCCC AAAA . TGATTT A CATT T A ATA GCC TT . C T A CTCAAC G C . TA TTTAAAAAAT CC . AA T TG T CCGG TA G AAGA A GT T CTTT A A . CTTGCG AG . . T T T . T A G T T G
blockSeqs : T . . . T AA T A T A . . . . CC C AT . C . . . . C T . . . . A . . . T . AA . . A A GA CAA A A . . T . . . GTTC CAA . . . . . . C . . T A CGT . . T G TT . T . C CATC G . . . GAATATC CC . A C G T TA C . AAA . A . CT . A . . A . . . . . . N . . T T .
blockSeqs : G . . . T . T A T T . . . . C T T . T . . . . C A . . . . A . . . A . . . . T . AC AC A A . . . . . . G AG . . . . . . G . . G A CGT . . C G CT . C . . ACCC G . . . AATATT TC . A T G T T C . ATA . A . CT . A . . . . . . . . . T . . T T .
blockSeqs : . . . T . . . T T . . . . C T G . C . . . . A A . . . . . . . . A . . . . A . AC A A A . . . . . . A AA . . . . . . G . . A A GT . . T C CT . T . . ACCC G . . . AATATC C . A T A T T C . ATA . G . A . G . . . . . . . . . T . . T T .
blockSeqs : . T . . . T T . . . . C G T . T . . . . . G . . . . . . . . A . . . . A . A A A A . . . . . . G AT . . . . . . T . . A A GT . . C A TT . A . . ATCC G . . . AATGTC T . A T C . . A . ATA . G . . . A . . . . . . . . . T . . T A .
blockSeqs : T . . . . . C . C . T . . . . . G . . . . . . . . A . . . . . . A A . . . . . . . . G AA . . . . . . T . . A A AT . . G T . . T . . CTCC G . . . TATT C . . . G . . T . ATA . G . . . G . . . . . . . . . . . . . .
blockSeqs : . . . . T . A . . . . . . . . G AT . . . . . . C . . A T GG . . T G . . T . . CTCC G . . C . C . AA . A . . . G . . . . . . . . . . . .
blockSeqs : . . . . . . . G A . . . . . . C . . G G C . . G C . . C . . TCT . . . T . AA . G . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . . C . . G G G . . T C . . . . . CT . . . A . . . . . G . .
blockSeqs : . . . C . . A A T . . T G . . . . . . . . A . . . . . . . .
blockSeqs : . C . . . . C . . C . . . . . . . . .
blockSeqCons : T* A* T** C* T******* ** *** AN* A** *** ** ** C**** GT*** ** NTCC**** ** AATATC********* C* A** G** T*** AA*** **
originalCons : AAATTACAACAGGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGTTATG--ATCATATT-ACACCGG-TTATNG-T-A-GAC-CTTCATTGGCCTTCCGGTAGAGTATCGCA-T------TCAATTCAAAGTT-CTCGT----GCA--TACCTA-CAA------GGCCGTTCGCAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AAC-TTGAG-AATCAGAAA-AAAAACAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-GACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAACGCCTTACCA-TT-G----GGATTAC-C---T-GTGCCAAA-TCA-T-TG--NACATTT--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTTAA--GCTTGCTTT--T---TAT-T------CTAATTCCAACAAGA-C-A-TTCTTAGTTTTTAG-G-TGAAAATTTATAT---TAC-TAA-ACA-A--TTCT-TTTG-TAGCG-ACTATCATTGAATGCTCACTTTTA----TGCATG-TATGTGTGT-A------TATATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGATTTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTATT-TATT
finalCons : AAATTACAACAGGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGT-ATG--ATCATATTA-CACCGGT--ATNG-T-A-GAC-CTTCATTGGC-TTCCGGTAGAGTATCGCAT-------TCAATTCAAAGTT-CTCGT----GCA--TACCTA-CAA------GGCCGTTCGCAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AAC-TTGAGAN-TCAGAAAA--AAACAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-GACGCTTT--GAC-TATCTTGG-GC--CAA-CAC----TGTG----GAACGCCTTACCA-TT-G----GGATTACGT---T-GTGCCAAA-TCA-T-TG--NACATTT--TTTTA-AA-CAANTCC----TAAAGAC-TCATTTCTTTAA--GCTTGCTTT--TAATATC---------TAATTC-AACAAGA-CA--TTCTTAGTTTTTAGG--TGAAAATTTATAT---TAC-TAA-ACAA---TTCT-TTTG-TAGCG-ACTATCATTGAATGCTCACTTTTA----TGCATG-TATGTGTGT-A------TATATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGATTTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTATT-TATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTTCGGACCTAGAAACAGCAAGCGTAAAATAGCTAATACCAACATTACTTTTGATGGATGTCTCATTAAGTGTGTTCCGGTAGTCAAAAACTTGGGGACTTATTTTGATGAAACCTAAGCATGGGAAAACACCTGTCTGCAGTGGCCAAGTCTTGTTATTTCC
Unaligned ( gi|16 ): CAGCATGGCCCTAACTGGAAACTGTGTTACCATCGGGACAAGTCTTCATTCATGGTCGCAATACAGTGTACACTTAAGAAAACATAGCTTAAAACGGCATCTTTTTTAAGATGACCTTTTCGGTTTACAG
Unaligned ( gi|24 ): TGGGGGCTTATTTTGGATGAAACTAAGCATGGAAAACATCTGTCTGCACTCTGAGTGGCCAAGTCTTGTTATTTTCCAGTTGAGGAACATAGGAAGAATCAGAT
Unaligned ( gi|35 ): TAATTCCAATAAGGACAGTCTTAAGAAAAAATTTTAGAAAAATTGAGGGATTT
Unaligned ( gi|36 ): AAAATCTCGAACATCCACGTATGGCAACAGACGATT
Alignments
lowQualScore : 11 11 22222222 1111 111111 1 111 11 1 111 1 3333333 111 111111 11 22222 2222 11111 1111 111111 11 11
lowQualScore : 8 8 8 6 5 55 7 44 99 77 5 5 5 5 5 5 00000000 0 5 1 2222 77 0 5 666666 7 2 77 5 5 5 2 0 5 5 5 1 000 55 1 5 1 777 5 7 5 1111111 3 1 4 222 99 55 4 55 8888888 888 4 99 4 3 55 3 66666 7777 0 3 000000 7 4 3 3 555 666 44 55 1 3 6 2 88888 1 66 0 66 0 00000 0 0 5 5 5 999 3 999 5 2222 77 3 55555 3 99 3 9999 3 6 3 000000 00 5 5 5 5 4 4 8 00 4 3 1 6
lowQualScore : . . . . . .. . .. .. .. . . . . . . ........ . . . .... .. . . ...... . . .. . . . . . . . . . ... .. . . . ... . . . ....... . . . ... .. .. . .. ....... ... . .. . . .. . ..... .... . . ...... . . . . ... ... .. .. . . . . ..... . .. . .. . ..... . . . . . ... . ... . .... .. . ..... . .. . .... . . . ...... .. . . . . . . . .. . . . .
lowQualScore : 8 0 0 7 7 77 3 00 22 77 7 7 0 0 0 0 22222222 1 7 4 1111 99 7 7 444444 9 7 99 7 7 7 0 1 7 7 7 7 000 77 4 7 7 333 0 4 0 2222222 2 8 4 222 55 55 0 55 1111111 999 0 55 0 6 00 3 00000 1111 7 3 555555 3 3 6 3 444 000 22 00 8 3 7 3 33333 4 33 7 11 7 00000 1 2 0 0 7 444 9 666 0 2222 11 3 44444 3 11 3 6666 3 4 6 555555 66 7 0 0 0 4 4 4 66 4 2 7 7
consensus : AAATTACAACAGGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGT-ATG--ATCATATT-ACACCGG--TATT-G-T-A-GAC-CTTCATTGGC-TTC-CGGTAGAGTATCGCA-T------TCAATTCAAAGTT-CTCGT----GCA--TACCTA-CAA------GGCCGTTCGCAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AAC-T-TGAG-A-TCAG-AAA--A-AAACAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-GACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAACGCCTTACCA-TT-G----GGATTA-CGTT-GTGCCAAA-TCA-T-TG--NACATTT--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTTAA--GCTTGCTTTT-----AATATCTAAT-T-CAACAAGA-C-A-TTCTTAGTTTTTAG-G-TGAAAATTTATAT---TAC-TAA-ACA-A--TTCT-TTTG-TAGCG-ACTATCATTGAATGCTCACTTTTA----TGCATG-TATGTGTGT-A------TATATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGATTTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTATT-TATT
Reference ( family-1138 ) : AAATTACAACAGGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGT-ATG--ATCATATT-ACACCGG--TATN-G-T-A-GAC-CTTCATTGGC-TTC-CGGTAGAGTATCGCA-T------TCAATTCAAAGTT-CTCGT----GCA--TACCTA-CAA------GGCCGTTCGCAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AAC-T-TGAG-ANTCAG-AAA--A-AAACAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-GACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAACGCCTTACCA-TT-G----GGATTA-CGTT-GTGCCAAA-TCA-T-TG--NACATTT--TTTTA-AA-CAANTC--C--TAAAGAC-TCATTTCTTTAA--GCTTGCTTTT-----AATATCTAAT-T-CAACAAGA-C-A-TTCTTAGTTTTTAG-G-TGAAAATTTATAT---TAC-TAA-ACA-A--TTCT-TTTG-TAGCG-ACTATCATTGAATGCTCACTTTTA----TGCATG-TATGTGTGT-A------TATATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGATTTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTATT-TATT
gi|1 : AAAATACAAAA--TACAAAATACTTG-CAGCAAGGATGCATCAGTCGCACTAAAAAGTTATG--ATCATATTCACACCGGCTTTTC-G-T-AAGAC-CTTCATTGGCCTTC-CGGTAGAGTATC-CATT------TCAATTCAAAGTT-CTTGT----GCAATCACCTACCAA------GGCCGTTCACAGCAT--CGCGA-CCTACG-TACCTTAGCGAACTTGCATGCCAAC-TTACATTCCT--CCGTCGGCG-AACAT-TGAGCAATCAGAAAA--A-AAACAGGAT-GCTTTTTCAAAAAGTTC--CTCGGA--C-TAGGAACC---G---AAGTC-AATTGGAAACAGGACGCTCTCGGACTTATCTTGG-GC--CAAGCA---CGTGTG----G-ATGCC-TACCATTT-G----GGATTG-C-CT-GTGCCAAA-TCA-T-TG--CACATTTTCTTTTA-AA-CAACTC--CCTTAAAGAC-TCATTTCTTTAAGGGCTTGCCTTT-----TAT-TCTAAT-TCCAATAAGAGC-AGTTCTTAGATTTTAG-ATTGAGGATTTATAT---TAC-TTA-ACA-A--TTTT-TTTA-TAGCG--TTATCCTTGTATGCTCACTTTTA----TGCATG-TATAT-TATCA------T-TATATAT--TGCATGTAA-A-AGCGCTTT-AGCAGATTTTGACTTTGATTAGGGC-GC-ATACAAATTTTAGTATTATTATT-TATT
gi|10 : CAATTTTAA---TGCAGGACATTT-TGT-A------TGCGT---T--TG-ATGT-G-A-TGCACTTT-AG-ATATTTTAAA-TTCATTAGGGT-GCTATACAAATTTTAGTGTTGT
gi|12 : tcagaaaatgactattcttagaattttgttttacagaagataagttctgtcagagttttgatagcacataata-CA---C-TATG----GAATGCTTTACTG-GT-T----GGATTA-C--C-GTGCAGAA-TCAATATG--GACATTT--C---A-AA-CAACAT--C--TCGAGAC-TCATTTCTTTAA--CATTGATTTT-----AATATTTAA
gi|13 : aggactcaactaagacttgtggaaccattcagtgccttAA-ACA-AGATTTT-CTT--TACCGTATTATCATTGAATGCTCACTTTTA----TGTATG-TATGTATGT-A------TAAATATATA-NN-NNNN-N-N-NNNNNNNN-NN-NNNNNNNNN--NNNNNNNNNNN-NNNNNNNNNNNTTTAGTATTATTATT-TATc
gi|14 : gcAC-TAA-ACA-A--ATTT-TTTA-TAGCG-ATTATCATTGTATGCTCACTTTTA----TGCATG-TATGTATGT-A------TATATATAT--TG-ATGT-A-A-AGCGCTTT-AG-AGA-TTTGA--TTGATTAGGGC-GCTATACAAATTTTAGTATTATTAT
gi|15 : T--TTCTATAA-CGACT---------AGACCTCATTTCATTAG--GCTTGCTTTTTTTAAAAAAT-TAAC-C-CAAC-AGA-CAA-TTCTTAG-TTTTAG-G-TGAAAA-TTATA------------------------------AGCA-ACTATCATTGAATGCTCACTTTagtatt
gi|17 : actta---TAC-TAA-ACA-AA-TTCT-TTTA-TAGCG-ATTATTATTGAA-----------A----TGCATG-TATGTATGT-A------TATATATA---TA-ATGT-A-A-AGCGCTTT-AG-AGA-TTTGA--TTGATGAGGGCGGCTATACAA--TTTAGTATTATTA-T-TATTacttatatat
gi|18 : taTAAT-T-CAACAAGA-C---TTCTTA-TTTTTAGTG-TGAAA-TTTATATA--TCC-AGA-GCATA--TTCTATTTG-TAGCA-ACTATCATTGAATGCTCACTTTGACTTTTGTATG-TATGTGTGT-G------CATGTATGT--a
gi|19 : AG-AATCAG-AAA--A----CAGGATTGCTTTTT--AAAAGTTC--CTCGAA--C-TAGGA--CCACG---AAGTC-AGATGGAAACA-GACGCTTT--GAC-CATCTTGG-GC--CAA-CA---G-TGTG----GAATGGCCTA-CA-TC-G----GGa
gi|2 : aAAATTACAACAGGTACAAAATACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGT-ATG--ATCATATC-ACACCGG--TATTAG-T-A-GAC-CTTCATTGGC-TTC-CGGTAGAGTATCGCA-TAACCATTCCATTCAAAGTT-CTTGT----GCA--TACCTA-CAA------GGCCGTTCACAGCAT--CG-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-AACGT-TGAG-A-TCAG-AAA--A----CAGGAT-GCTTTT---AAAAGTTC--CTCGAA--C-TAGAA--C---G---AAGTC-AACTGGAAACA-GACGCTTT--GAC-CATCTTGG-GC--CAA-CA---G-TGTG----GAATGCCTTACCA-TT-A----GGATTA-TGTT-GTGCCAAA-TCA-T-t
gi|20 : gttattccagccgaggaatatacggggaatcaagaaactctcgacgatgatacaggcaaaacatctnnnnnnnnnnnnnnnnnnnnnnnnncaatacatgctctcgtcacatcaaaactagactatgctaatgcattgttacttggccttccaaacagtgctaccaacAGGATG-ATCAGTCGCACTAAAAAGT-ATG--AT
gi|21 : caaaatgacatccgaatggattacaacatggcaacttaatactgcaacataaaaacaaattatttagtagttacttttgaattatcAT-GCTTTT---AAAATTTC--CTCAGC--T-TAGA-------------GTC-ATTAAGAAACA-GACACTTC--GAT-TATTTTTTCGT--CAA-TA---T-TGTG----GAACACCTTTCCA-TT-A----GGTTTA-CGTT-GTGCCAAA-TAA-C-TG--GA
gi|22 : CTATCATTGAATGTTCACTTTTA----TGCATG-TATGTATGT-A------TATATATATAGTA-ATGT-A-A-AGCGCTTT-AG-AGA-TTTGA--TTGATTAGTGC-GCTATACAAATTTTAGTATTA-TATT-
gi|23 : TA-AA-CAAACC--C--CAAAGA----------------G-TTGCTTTT-----AATATCTAAT-T-TAATAAGA-C-A-TTCTTAGCTTTTAG-G-TGAAAATTTATACCGGTATATAAGACATA--TTCT-TTT--TAGCA-ACTACCata
gi|25 : TACT-G-CAGCAAGGATG-ATCAGTCGCACTAAAAAGT-ATGAAATCA-ATT--CACCGG--TATA-G-T-A-GAC-CTTCATTGGC-CTCACGGTAGAGTA
gi|26 : ----TGCGTG-TGTGCGCGT-ACTTGCGTGCGTGTTT--TA-ATGT-ATATAGCGTTTT-AG-AGATTTTGA--TTGAATAGGGC-ACTATACAA
gi|27 : T---TA--TAG-ACATA--TTCT-TTTG-TAGCA-ACTATCATTGAATGCTAACTTTTACT--TACATG-TGTATGTGT-G------TGTATGTAT--
gi|28 : CTAAT-T-CAACAAGA-T-A-TTCTTAGTTTTTAG-A-TGAAAATTTATA----TAA-TAG-AAATA--TTTT-TTTG-CAGCA-ACTATCATTAAgaa
gi|29 : -GC--CAA-AG---T-TGTAAAAAGGATGCCTTACCA-TT-A----GGATTA-CGT--GTGCCAAA-TCA-T-TG--CACA--T--TTTTA-AA-CAA
gi|3 : tcAAATTACAACATGTACAAAATACT-G-CAGCAGTGACG-ATCAGTCGCACTAAAAAGT-ATG--ATCATATT-ACACCCG--TATT-G-TTA-GAC-CTTCATTGGC-TTC-CAGTGAAGTATTGCA-T------TAAATTCGAAGTT-CTCATAATTGCA--TACCTA-CAA------GGCCGTTCTCTGATT--CG-GA-CCTACT-T----T-GCAAAA-TG-AT-TCAACTTTA---TTCT--CTGTT-GCG-AACAT-TGTG-A-TCAG-AAA--A----CAGAAT-GCTTTT---AACAGTTC--CTCAGA--C-TAGAA--C---A---AAGTC-A-TTGGAAACA-GACGTTTT--GAC-TATTTTGT-GT--CAA-TA---C-TGTG----GAACGCCTTACCA-TTTGATTTGGATTA-TTTT-GTGCCAAAATCA-C-TG--AATATTT--T--TA-AA-CAAACC--C--TAAAGAT-TCCTTTCTTTAA--GCTTGCTTTT-----ATTATTTAAT-T-CCACAAGA-C-A-TTCTTAGTTTTTAG-C-TGAAAA-TTATAT---TAT-AAG-AC--A--TACT-TTTGTTAGCA-ACTATCATTGAATGCTCACTTTTA------CATA-T
gi|30 : gctagcaac---TAC-TAA-ACA-A--ATTT-TTTA-TAGCG-ATTATCATTGAATGCTCACTTTTA----TGCATG-TATGTATGT-A------TATATATA
gi|31 : aACTAAAATGT-CTG--GTCATATT-ACGCCGG--TATT-GAT-A-TAC-CTTCATTGGC-TTC-CAGTACAGTATCGCA-G------TCA
gi|32 : A-TCA-G-TG--TACACTC--TTCTA-AAATAAATC--C--TAAA-AC-TCGTCTTTTTAA--G
gi|33 : ccattcctggccT-A-A-AGCACTTTTGG-GGATTTTGA--CTGATTCGGGC-ACTGTACAAATTTTAGTATTG-TATTGTATaaggt
gi|34 : tGCTTT-AG-AGATTT-GA--TTGATTAGGGC-GCTATTCACATTTTAGTATTATTAAT-TATT
gi|4 : AAATTACAACGGGTACAATATACT-GGCAGCAAGGATG-ATCAGTCGCACTAAAAAGT-ATGAAATCA-ATT--CACCGG--TATT-G-T-A-GAC-CTTCATTGGC-CT--CGGTatt
gi|5 : gtgttcggactctcgaaacaaggaagcgtaaaataagctaataccagcattactttcgatggatgtctcattaagtctgttccatagtcaaaactttggggtccttattttgaatgaaaaatctaagcatgggaaaacactgtctgcagtggtcaagtttcttgttatttccagttgaggaaacattagagagatcagattacctcatcgacgatgatacatgcaaaacattaatactgctgttctcgtacatcaaagactagactatgctaatgcattgttacttggcctgtccaaacagtgctacccaac-T-A-GAC-CTTCATTGG---------TAGAGTATCGCA-T------TCAATTC--------TTAT----GCA--TACCTA-CAACTACAAGGCCGTTTACAGCAT--CT-GA-CCTACT-TACCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTC-GCG-A------------TCAG-AAA--A----CAGGAT-GCTTTT---AAAAGTTC--CTCGGA--C-TAGAA--C---G---AAGTC-AATTGGAAACA-AACGCTTT--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAATGCCTTACCA-TT-A----GGATTA-CATT-GTGCCAAA-TCA-T-TG--GATA--T--TTTTA-AA-CAACTC--C--TAAAGAC-TCATTTCTTT-A--GCTTGCTTTTG----AATATCTAATCT-CAACAA
gi|6 : -GACACTGCATTGGC-TGC-CAGTTGCGCAACGCA-C------TGAATACAAAATT-CTCCT----ACA--TACATA-CAA------AGCAATTCACAACATTTCG-----CCACAATACATCGAGGAAC-TC-AT-TCA-CATT----TACCAACCAGG-GCG-ATT-TCTAAG-A-TCAG-AAA--ACAAACAGG-C-GCTGGT---AAAAA-------CAAAATT-TCGAA--C---GTTCACGTC----TGGCAACA-GACGATTA--GA--TGT----G-GCTGCAA-CATCCC-TCTG----GAACTCTTTATCA-TC-A----CATCTC-CATTCATGTC-TA-TCA-G-TG--CATACTT--TTAAA-AA-CA--TC--T--TAAA-AT-TCATATTTTTAA--G
gi|7 : AGTGTCGCA-T------TCAATTCAAAGTTTCTTGT----GCA--TACCTG-CAA------GGC-GTTCGCAGCAT--CG-GA-CCTACT-T-CCTTAGCGAAC-TG-AT-CCAACATTA---TTCTAACCGTC-GCGGAAC-T-TGAG-ACTCAG-AAACAA-AAAC----T-GCTTTT---AAAAGTTCTTCTCGGA--CCTAGAA--C---G---AAGTCCAATTGGAAACA-GACACTTC--GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAATGCCTTACCA-TT-G----GGATTGCCGTT-GTGCCAAA-TCA-T-TGGCCACATTT--TTTAA-AC-CAACTC--C--TAAAGaaagcttt
gi|8 : GTGTCGCAAT------GCAATTCAAAGTT-CTTGT----GCA--TAC-TG-CAA------GGC-GTTCGCAGCAT--CG-GAACCTACT-T-CCTTAGCGAAC-TG-AT-CCAACATTA---TTCT--CCGTCCGCG-AAC-T-TGAG-ACTCAG-AAACAA-AAAC----T-GCTTT----AAAAGTTTT-CTCGGA--C-TAGAA--C---G---AAGTCCAATTGGAAACA-GACACTTTC-GAC-TATCTTGG-GC--CAA-CA---C-TGTG----GAATGCCTTACCA-TT-G----GGATTGCCGTT-GTGCCAAA-TCA-T-TG--CACA--T--TTTTA-AACCAACTCAAC--TAAAG
gi|9 : --CTCGTA--C-TAGAA--C---G---AAGTC-ATTTGGAAGCA-GACGCTTT--GAC-TATTTCAC-GC--CAA-TA---C-TGTG----GGACGCCTTACCA-TT-A----GGATTA-CGGT-GTGCCCCA-TCA-C-TG--GATA--T--TTCTA-AA-CAAACC-----------------TTCTTTAA--ACTTGCTTTT-----AATGTCTAAT-T-CAACAAGA-C-A-TTCTTAATTTTTTG-G-TGAAAATTTATA----TAT-TAG-AC--A--TTCT-TTTG-TAGCA-ATTATCATTAAATGCTCATTTTTGCT--TACATG-TATGTGTGT-A------TATGTAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTTCGGACCTAGAAACAGCAAGCGTAAAATAGCTAATACCAACATTACTTTTGATGGATGTCTCATTAAGTGTGTTCCGGTAGTCAAAAACTTGGGGACTTATTTTGATGAAACCTAAGCATGGGAAAACACCTGTCTGCAGTGGCCAAGTCTTGTTATTTCC
Unaligned ( gi|16 ): CAGCATGGCCCTAACTGGAAACTGTGTTACCATCGGGACAAGTCTTCATTCATGGTCGCAATACAGTGTACACTTAAGAAAACATAGCTTAAAACGGCATCTTTTTTAAGATGACCTTTTCGGTTTACAG
Unaligned ( gi|24 ): TGGGGGCTTATTTTGGATGAAACTAAGCATGGAAAACATCTGTCTGCACTCTGAGTGGCCAAGTCTTGTTATTTTCCAGTTGAGGAACATAGGAAGAATCAGAT
Unaligned ( gi|35 ): TAATTCCAATAAGGACAGTCTTAAGAAAAAATTTTAGAAAAATTGAGGGATTT
Unaligned ( gi|36 ): AAAATCTCGAACATCCACGTATGGCAACAGACGATT