lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111 1 44444444 4444444444444444 1 11111 66666666 1 111111 666666666 111 111 111111111 5555555555 1 1111 111 1 6666666666666666666666666666666666666666666666666666666666666666 11 111 11 222 1
lowQualScore : 2 7 6666 2 88888888 7 6 2222222222222222 5 0 00000 0 00000000 3 2 0 666666 5 0 5 444444444 666 44 222 3 99 66 666666666 1 6 8 6666666666 0 8 8 7777 8 8 555 0 3333333333333333333333333333333333333333333333333333333333333333 55 88 11 9 5 222 5 6 33 999 1 3 6 7 3
lowQualScore : . . .... . ........ . . ................ . . ..... . ........ . . . ...... . . . ......... ... .. ... . .. .. ......... . . . .......... . . . .... . . ... . ................................................................ .. .. .. . . ... . . .. ... . . . . .
lowQualScore : 5 0 7777 0 33333333 3 7 8888888888888888 0 1 77777 7 44444444 9 0 1 444444 7 7 7 333333333 000 22 000 7 77 00 888888888 0 7 0 5555555555 0 0 0 0000 0 0 000 5 0000000000000000000000000000000000000000000000000000000000000000 22 00 00 9 7 555 2 7 00 000 7 2 7 3 3
consensus : TCAGNGGTAGCTNGA-ATTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAANTTCAA---TAACGACTGAC-ACTGAAATACTT------A-CAGGTAGTGT-GA--A-A----ATTATTT-GACTNTTTGGNT-TTTGTTTC-GTACTT-----TT--CAACAACA-ATT-C-AT---CGGNGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCTGG----NA-------TTTACGAC-----ATACCTGTCGCC-TGTATGAA--CCC--GATGTTTTTTCAGCAATTTCCACAATGTCCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAG-TTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCT
Reference ( gi|2 ) : TCAGCGGAAGCTGGAAATTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAACTTCAA---TGACGACT-ACCAGTAAAATACTT------A-CAGGTAGTGT-GA---------ATTATTT-ACCTCTTTGGAT-TTTGTTTC-TTATTT-----TT--CAACAACA-ATT-C-AT---CTGCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCAGG----AA-------TCTATGAC-----ATACC----GCT-TACATGAA--CCC--GATGTTTTTACAGCGATTTCCACAATGTTCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAGCTTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCT
gi|9 : TCAGAGGTAGCTAGACATTTTTTTTTTAATCAAG--CGGT--AGT----GA-------TGGTCATGAACAATTTCAA--------A---ATC-GTGAAATACTT------G-CAGGCAGTGT-
gi|15 : tttgcttacctgttatttattgatcttgtattccccaggtattgaaGCGGTAGCTG-AAATTT-TT--------AAGACCGCTCTGGTAGTATAA------T--TTATAAA--ACTTCAA---TGA-GACT------TAAA-TACTT------A-CAGGTAGTGT-GA---------ATT
gi|14 : GGTAGCTTGA---TTCTT--------AAGACCGCTCTGGG----TAGTAATATT--TTATGAACAA-TTCAA---TGACGAC-------TGAAATCTCT------ATCAG--AGTGTGGA---------ATTtt
gi|3 : g----TA-------T--TTCTTCAAAAGTTCAA---TAACGACTGACGACTGAAATACTTTAATATA-CAGGTAGTGT-GATTAAATTG-ATTATTT-GACTAATTGGTT-TTTGTTCC-GTACTT-----TC--CAACAACA-ATt
gi|12 : aaagttccgcggtgaaattgaaagatcggcgagtatatatatatatacacacccgggatagaactttctaatacagtcagcaaaatactcttccttcatttgcatacctcg----TG-------T--TCATGAACAACTTCAA---TAACG---------TGAA-TGC--------A-C--------T-GA----------TTATTT-GCTTTTTCGG--------TTC-TT----------C--CAACAACA-ATT-C-A------AGGGAT-AAACTT-T-TTAA-ATTTGAA----AC-CAGGTCGGT-AGT
gi|1 : AAGTTCAACCATAACGACTGACGACTGAAATACTT------A-CAGGTAGTGT-GAAAATAAATGATTATTTGGACTAGTTGGGTATTTTTTTT-GTGTTCGTACGTT--CAA-AACA-ATT-CAAT---TGGTGGAG-AAACTTGTGTTTG-GTGTGAA----ACGCAATTTGGT-AGTGCTTCACCTCTAGT----AAATTTACTTTTACGACATGTAATACCTGTTGCCGTATATGAAG-CCC---------------CGATTTC--CAACGTGCA--TGCG-TGTAA-T-TTACAAATCGTTTTCTCTT---TTGTCGGAACAAtc
gi|8 : aaattttctttcatgtcagatttgcgcatgtatgttacatttatctacaatttggtcgtcccatcgaaacctgacaaaagttcccgcagtgaaaattgaaagttggcgagtacatacacacccgggaatacacacattcatgtagatactttctaaattaagtatatcagcaaaatactgctacctcgttagtattgaatcagcggttgctagacattttccttcaaAAGTTCAA---TAACGACTGACTACTGAA---CTT------A-CAGGTTGTGT-GATTAAACTG-ATTATTT-GACTCTTTGGTT-TTTGATCC-GTACTT-----TT--CAACAATA-ATT-g
gi|5 : agaactttctaatacagtcagcaaaatacttgtccttcttttgcatacctcgtagtattgaattagcggttgctagaaatttcttcaa---------ATTATTT-ACCTCTTTGGAT-TTTGATTC-TTAATT-----TT--CAACAACATATT-C-A------GGGGAGAAAACTT-TGTTTATGTGTGAAAGAGAT-GAATTTGGTAAGTGCT--ACATGCTGG----TA-------TTTACG-----------------------ATG----CCC---ATGTTTTTTCAGCA--TTC---------CACGTGCG-TGTAA---TTACA-CT-GTTTTCCCCTAG--TATC--AACAAAGGCTGT-AATGTGTTAGAAATTCTCTt
gi|4 : GAT-TTTGTTTCCTTATTT-----TTATCACTAACA-ATTGC-ATGATCAGCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTAGT-TGTGCT--GCATGCTGG----TA-------TTTACGAC-----ATACCTATCGCC-TGTATGAA--CCCCCGATGATTATTCAGCAATTTCCACAATGTGCACGTGCG-TGCAA-T-TTACATTT-GTTTCTTTCTAGCTTGTCAAAAC--AGGCAGCATAGGTG-TAGAAaa
gi|13 : -TGTTTG-GTGTGAA----AT-CAATTTGGT-AGTGCT--TCATGCTGGTATAAA-------TTTAAGAC-----ATA---------------GAACCCCC--GATATTGTTTCAGCAATTTCCACAAAGTCCACGTGCG-TGT
gi|20 : CAATTTCCACGTGCG-TGTAT-T-TTACACCT-GCTT--CTCTA--TTGTCAAA
gi|19 : CAATTTCCACGTGCG-TGTAT-T-TTACACCT-GCTT--CTCTA--TTGTCAAAggat
gi|17 : ATGTCCATGTGCGCTGTAAGTATTACACCG-GTTTCCCCCT-GCTTGCAAAAACAAA-GCTGTAAAGATG-TAAAggat
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TATATACATAGTTAATGCGCGAAAATTAAAAAGAGATTGCACAACTAATTGAAAAGAATACATTTCCAAGATTTTCCCTGTCAATTTGCTGGTGTGTCATATATCTGAAACTGGTCGGGTCATCGAAACCCACTAAAGCAATACCTATAATTATGTAAGTTCCGCAGTAAAACTGAAACCTCGGCGAGTACATAGTCA
Unaligned ( gi|7 ): ATTTATTAAAACTAGTGCGGATCCACTTCAGACCTATTGATAATGGGTTCCGTGATTATTGAACGAGTCGGCGATACTACTTGAAATATACAATACCCAATAAAACTTTCTAATACAATCAGCAAAATACTCCTCCTTCTTTTGCATACCTTGTAGTCTTGAATCAGCGGTTGCTAGAAATTTCTTCAA
Unaligned ( gi|10 ): TCTTTCTTGTCAATTGGTAGTTAGTCCATTTGTATTAAAACTGTCGGCTCATCGAACCTACAAAAGTAGTGATCTTATATGAAGTTCCACAGTAAACTGAAAGGTCGCAGTACATACAGTCGGCAAA
Unaligned ( gi|11 ): TTCCCCCGTAAAAGTAAGTCACATTTTTGTATAAAATGTCGGCTCATCGAAACCTATAAATAGTAGTTATTATATGAAGTTCCAAGTAACGAAATGGTTGGCGAGTACATACAGTCGGCAAAA
Unaligned ( gi|16 ): CTAATTGAAAATAATACGTTTCAAAGAGGAAAGGAATATTTTCTCCCTGTCAATTGCTAGAGTGTGTCATATA
Unaligned ( gi|18 ): ATTTGCTTATCTGTAATTTATTCATCTAATAGTCCGCAAGTATTGAATCAAAGGTAG
Unaligned ( gi|21 ): ATTCTTCATTCTCTTACAAATGTAGTATTGA
Alignments
lowQualScore : 222 33333333 3333333333333333 3333333 111111 6666666666666 1111111 333333 1111 11 33333333333333 7777777777777777777777777777 1 222 1
lowQualScore : 1 1 333 6 66666666 3 2 1111111111111111 2 5 888 0 9999999 3 444444 5 1111111111111 999 1 7777777 77 4 5 33 77 5 6 8 666666 1 8 6 6 4444 6 6 11 88888888888888 9999999999999999999999999999 0 1 11 1 6 0 55 5 999 3 5 8 333 0 0 2 3 0
lowQualScore : . . ... . ........ . . ................ . . ... . ....... . ...... . ............. ... . ....... .. . . .. .. . . . ...... . . . . .... . . .. .............. ............................ . . .. . . . .. . ... . . . ... . . . . .
lowQualScore : 0 0 222 5 22222222 2 5 2222222222222222 5 9 888 9 8888888 2 444444 0 3333333333333 222 0 4444444 66 3 7 11 99 7 7 0 000000 0 0 7 7 2222 7 7 00 00000000000000 4444444444444444444444444444 0 0 66 0 8 8 66 0 444 0 7 9 000 1 8 5 2 0
consensus : TCAGCGGTAGCTGGA-A-TTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAANTTCAA---TAACGACTGAC-ACTGAAATACTT------A-CAGGTAGTGTGA---AA-T-----ATTATTT-GACTCTTTGG------NTTTTGT-TTCNT-ACTTTT--CAACAACA-ATT-C-AT---C-GCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCTGG----TA--------TTTACGAC-----ATACCTGTCGCC-TATATGAACCCCCGATGTTTTTTCAGCGATTTCCACAATGTCCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAG-TTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCT
Reference ( family-1106 ) : TCAGNGGTAGCTNGA-A-TTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAANTTCAA---TAACGACTGAC-ACTGAAATACTT------A-CAGGTAGTGTGA---AA-------ATTATTT-GACTNTTTGG------NTTTTGT-TTCGT-ACTTTT--CAACAACA-ATT-C-AT---CGGNGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCTGG----NA--------TTTACGAC-----ATACCTGTCGCC-TGTATGAA--CCCGATGTTTTTTCAGCAATTTCCACAATGTCCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAG-TTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCT
gi|1 : AAGTTCAACCATAACGACTGACGACTGAAATACTT------A-CAGGTAGTGTGA---AAATAAATGATTATTTGGACTAGTTGGGTATTTTTTTTGTGTTCGT-AC-GTT--CAA-AACA-ATT-CAAT---TGGTGGAG-AAACTTGTGTTTG-GTGTGAA----ACGCAATTTGGT-AGTGCTTCACCT-CTAG----TAAATTTACTTTTACGACATGTAATACCTGTTGCCGTATATGAAG-CCC-------------CGATTTC--CAACGTGCA--TGCG-TGTAA-T-TTACAAATCGTTTTCTCTT---TTGTCGGAACAA
gi|12 : aaattttctttcatgtcagatttgcgcatgtatgttacatttatctacaatttggtcgtcccatcgaaacctgacaaaagttcccgcagtgaaaattgaaagttggcgagtacatacacacccgggaatacacacattcatgtagatactttctaaattaagtatatcagcaaaatactgctacctcgttagtattgaatcagcggttgctagacattttccttcaa----TG-------T--TCATGAACAACTTCAA---TAACG---------TGAA-TGC--------A-C--------TGA-------------TTATTT-G-CTTTTTCG------GTTCT-------------TC--CAACAACA-ATT-C-A------AGGGAT-AAACTT-T-TTAA-ATTTGAA----AC-CAGGTCGGT-AGTg
gi|13 : -TGTTTG-GTGTGAA----AT-CAATTTGGT-AGTGCT--TCATGCTGGTATAAA--------TTTAAGAC-----ATA---------------GAACCCCCGATATTGTTTCAGCAATTTCCACAAAGTCCACGTGCG-TGTtc
gi|14 : GGTAGCTTGA----TTCTT--------AAGACCGCTCTGGG----TAGTAATATT--TTATGAACAA-TTCAA---TGACG-------ACTGAAATCTCT------ATCAG--AGTGTGG---AA-------TTT
gi|15 : gGCGGTAGCTGAA-A-TTT-TT--------AAGACCGCTCTGGTAGTATAA------T--TTATAAA--ACTTCAA---T-------GAG-ACTTAAATACTT------A-CAGGTAGTGTGA---A
gi|17 : ATGTCCATGTGCGCTGTAAGTATTACACCG-GTTTCCCCCTGC-TTGCAAAAACAAA-GCTGTAAAGATG-TAAAtttt
gi|19 : CAATTTCCACGTGCG-TGTAT-T-TTACACCT-GCTT--CTCTA--TTGTCAAAt
gi|2 : TCAGCGGAAGCTGGA-AATTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAACTTCAA---TGACGACTACC-AGTAAAATACTT------A-CAGGTAGTGTGA---A---------TTATTT-ACCTCTTTGG------ATTTTGT-TTCTT-ATTTTT--CAACAACA-ATT-C-AT---CTGCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCAGG----AA--------TCTATGAC-----ATAC----CGCT-TACATGAA--CCCGATGTTTTTACAGCGATTTCCACAATGTTCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAGCTTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCTggat
gi|20 : CAATTTCCACGTGCG-TGTAT-T-TTACACCT-GCTT--CTCTA--TTGTCAAA
gi|3 : ----TA-------T--TTCTTCAAAAGTTCAA---TAACGACTGACGACTGAAATACTTTAATATA-CAGGTAGTGTGATTAAATTG----ATTATTT-GACTAATTGG------TTTTTGT-TCCGT-ACTTTC--CAACAACA-ATggat
gi|4 : aaagttccgcggtgaaattgaaagatcggcgagtatatatatatatacacacccgggatagaactttctaatacagtcagcaaaatactcttccttcatttgcatacctcgG------ATTTTGT-TTCCTTATTTTTATCACTAACA-ATTGC-ATGATCAGCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTAGT-TGTGCT--GCATGCTGG----TA--------TTTACGAC-----ATACCTATCGCC-TGTATGAACCCCCGATGATTATTCAGCAATTTCCACAATGTGCACGTGCG-TGCAA-T-TTACATTT-GTTTCTTTCTAGCTTGTCAAAAC--AGGCAGCATAGGTG-TAGAA
gi|5 : -------ATTATTT-ACCTCTTTGG------ATTTTGA-TTCTT-AATTTT--CAACAACATATT-C-A------GGGGAGAAAACTT-TGTTTATGTGTGAAAGAGAT-GAATTTGGTAAGTGCT--ACATGCTGG----TA--------TTTACGA-----------TG----------------CCC-ATGTTTTTTCAGC-AT----------TCCACGTGCG-TGTAA---TTACA-CT-GTTTTCCCCTAG--TATC--AACAAAGGCTGT-AATGTGTTAGAAATTCTCT
gi|8 : AAGTTCAA---TAACGACTGACTACTGAA---CTT------A-CAGGTTGTGTGATTAAACTG----ATTATTT-GACTCTTTGG------TTTTTGA-TCCGT-ACTTTT--CAACAATA-ATT-aa
gi|9 : agaactttctaatacagtcagcaaaatacttgtccttcttttgcatacctcgtagtattgaattagcggttgctagaaatttcttcaaTCAGAGGTAGCTAGACA-TTTTTTTTTTAATCAAG--CGGT--AGT----GA-------TGGTCATGAACAATTTCAA---AATCG---------TGAAATACTT------G-CAGGCAGTGTt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TATATACATAGTTAATGCGCGAAAATTAAAAAGAGATTGCACAACTAATTGAAAAGAATACATTTCCAAGATTTTCCCTGTCAATTTGCTGGTGTGTCATATATCTGAAACTGGTCGGGTCATCGAAACCCACTAAAGCAATACCTATAATTATGTAAGTTCCGCAGTAAAACTGAAACCTCGGCGAGTACATAGTCA
Unaligned ( gi|7 ): ATTTATTAAAACTAGTGCGGATCCACTTCAGACCTATTGATAATGGGTTCCGTGATTATTGAACGAGTCGGCGATACTACTTGAAATATACAATACCCAATAAAACTTTCTAATACAATCAGCAAAATACTCCTCCTTCTTTTGCATACCTTGTAGTCTTGAATCAGCGGTTGCTAGAAATTTCTTCAA
Unaligned ( gi|10 ): TCTTTCTTGTCAATTGGTAGTTAGTCCATTTGTATTAAAACTGTCGGCTCATCGAACCTACAAAAGTAGTGATCTTATATGAAGTTCCACAGTAAACTGAAAGGTCGCAGTACATACAGTCGGCAAA
Unaligned ( gi|11 ): TTCCCCCGTAAAAGTAAGTCACATTTTTGTATAAAATGTCGGCTCATCGAAACCTATAAATAGTAGTTATTATATGAAGTTCCAAGTAACGAAATGGTTGGCGAGTACATACAGTCGGCAAAA
Unaligned ( gi|16 ): CTAATTGAAAATAATACGTTTCAAAGAGGAAAGGAATATTTTCTCCCTGTCAATTGCTAGAGTGTGTCATATA
Unaligned ( gi|18 ): ATTTGCTTATCTGTAATTTATTCATCTAATAGTCCGCAAGTATTGAATCAAAGGTAG
Unaligned ( gi|21 ): ATTCTTCATTCTCTTACAAATGTAGTATTGA
Alignments
lowQualScore : 222 33333333 3333333333333333 3333333 111111 55555555555 1111111 55555555 1111 11 3333333333333 66666666666666666666666 1 222 1
lowQualScore : 0 333 6 66666666 3 2 1111111111111111 2 5 888 0 9999999 3 444444 5 5 55555555555 999 9999999 77 666 33 77 5 6 66666666 3 8 6 6 4444 6 6 11 7777777777777 00000000000000000000000 5 0 1 0 0 1 66666 5 999 3 5 8 333 0 0 2 3 0
lowQualScore : . ... . ........ . . ................ . . ... . ....... . ...... . . ........... ... ....... .. ... .. .. . . ........ . . . . .... . . .. ............. ....................... . . . . . . ..... . ... . . . ... . . . . .
lowQualScore : 2 222 5 22222222 2 5 2222222222222222 5 9 888 9 8888888 2 444444 0 7 55555555555 222 4444444 66 777 11 99 7 7 66666666 2 0 7 7 2222 7 7 00 0000000000000 00000000000000000000000 0 8 0 6 8 4 88888 0 444 0 7 9 000 1 8 5 2 0
consensus : TCAGCGGTAGCTGGA-A-TTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAANTTCAA---TAACGACTGAC-ACTGAAATACTT------A-CAGGTAGTGTG-A---AAT-----ATTATTT-GACTCTTTGG------NTTTTGT-TTCNT-ACTTTT--CAACAACA-ATT-CA--T---C-GCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCTGGT----A--------TTTACGAC-----ATACCTGTCGCC-TATATGAACCCCCGATGTTTTTTCAGCGATTTCCACAATGTCCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAG-TTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCT
Reference ( family-1106 ) : TCAGCGGTAGCTGGA-A-TTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAANTTCAA---TAACGACTGAC-ACTGAAATACTT------A-CAGGTAGTGTG-A---AAT-----ATTATTT-GACTCTTTGG------NTTTTGT-TTCNT-ACTTTT--CAACAACA-ATT-CA--T---C-GCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCTGGT----A--------TTTACGAC-----ATACCTGTCGCC-TATATGAACCCCCGATGTTTTTTCAGCGATTTCCACAATGTCCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAG-TTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCT
gi|1 : AAGTTCAACCATAACGACTGACGACTGAAATACTT------A-CAGGTAGTGTGAA---AATAAATGATTATTTGGACTAGTTGGGTATTTTTTTTGTGTTCGT-AC-GTT--CAA-AACA-ATT-CAATT---G-GTGGAG-AAACTTGTGTTTG-GTGTGAA----ACGCAATTTGGT-AGTGCTTCACCT-CTAGT----AAATTTACTTTTACGACATGTAATACCTGTTGCCGTATATGAAGCCCCGA-----TTTC-----------CAACGTGCA--TGCG-TGTAA-T-TTACAAATCGTTTTCTCTT---TTGTCGGAACAA
gi|12 : aaattttctttcatgtcagatttgcgcatgtatgttacatttatctacaatttggtcgtcccatcgaaacctgacaaaagttcccgcagtgaaaattgaaagttggcgagtacatacacacccgggaatacacacattcatgtagatactttctaaattaagtatatcagcaaaatactgctacctcgttagtattgaatcagcggttgctagacattttccttcaa----TG-------T--TCATGAACAACTTCAA---TAACG---------TGAA-TGC--------A-C--------TG-A------------TTATTT-G---CTTT----------TTCGG-TTC------TTC--CAACAACA-ATT-CA--------AGGGAT-AAACTT-T-TTAA-ATTTGAA----AC-CAGGTCGGT-AGTg
gi|13 : -TGTTTG-GTGTGAA----AT-CAATTTGGT-AGTGCT--TCATGCTGGTATAAA--------TTTAAGAC-----ATA---------------GAACCCCCGATATTGTTTCAGCAATTTCCACAAAGTCCACGTGCG-TGTtc
gi|14 : GGTAGCTTGA----TTCTT--------AAGACCGCTCTGGG----TAGTAATATT--TTATGAACAA-TTCAA---TGACG-------ACTGAAATCTCT------ATCAG--AGTGTG-G---AAT-----
gi|15 : gGCGGTAGCTGAA-A-TTT-TT--------AAGACCGCTCTGGTAGTATAA------T--TTATAAA--ACTTCAA---T-------GAG-ACTTAAATACTT------A-CAGGTAGTGTG-A---Att
gi|17 : ATGTCCATGTGCGCTGTAAGTATTACACCG-GTTTCCCCCTGC-TTGCAAAAACAAA-GCTGTAAAGATG-TAAAtttt
gi|19 : CAATTTCCACGTGCG-TGTAT-T-TTACACCT-GCTT--CTCTA--TTGTCAAAt
gi|2 : TCAGCGGAAGCTGGA-AATTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAACTTCAA---TGACGACTACC-AGTAAAATACTT------A-CAGGTAGTGTG-A-----------ATTATTT-ACCTCTTTGG------ATTTTGT-TTCTT-ATTTTT--CAACAACA-ATT-CA--T---CTGCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCAGGA----A--------TCTATGAC-----ATAC----CGCT-TACATGAA--CCCGATGTTTTTACAGCGATTTCCACAATGTTCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAGCTTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCTggat
gi|20 : CAATTTCCACGTGCG-TGTAT-T-TTACACCT-GCTT--CTCTA--TTGTCAAA
gi|3 : ----TA-------T--TTCTTCAAAAGTTCAA---TAACGACTGACGACTGAAATACTTTAATATA-CAGGTAGTGTG-ATTAAATTG---ATTATTT-GACTAATTGG------TTTTTGT-TCCGT-ACTTTC--CAACAACA-ATggat
gi|4 : aaagttccgcggtgaaattgaaagatcggcgagtatatatatatatacacacccgggatagaactttctaatacagtcagcaaaatactcttccttcatttgcatacctcgG------ATTTTGT-TTCCTTATTTTTATCACTAACA-ATTGCA--TGATCAGCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTAGT-TGTGCT--GCATGCTGGT----A--------TTTACGAC-----ATACCTATCGCC-TGTATGAACCCCCGATGATTATTCAGCAATTTCCACAATGTGCACGTGCG-TGCAA-T-TTACATTT-GTTTCTTTCTAGCTTGTCAAAAC--AGGCAGCATAGGTG-TAGAA
gi|5 : -----ATTATTT-ACCTCTTTGG------ATTTTGA-TTCTT-AATTTT--CAACAACATATT-CA--------GGGGAGAAAACTT-TGTTTATGTGTGAAAGAGAT-GAATTTGGTAAGTGCT--ACATGCTGGT----A--------TTTACGA-----------TG--------------CCC---ATGTTTTTTCAGC-AT----------TCCACGTGCG-TGTAA---TTACA-CT-GTTTTCCCCTAG--TATC--AACAAAGGCTGT-AATGTGTTAGAAATTCTCT
gi|8 : AAGTTCAA---TAACGACTGACTACTGAA---CTT------A-CAGGTTGTGTG-ATTAAACTG---ATTATTT-GACTCTTTGG------TTTTTGA-TCCGT-ACTTTT--CAACAATA-ATT-aa
gi|9 : agaactttctaatacagtcagcaaaatacttgtccttcttttgcatacctcgtagtattgaattagcggttgctagaaatttcttcaaTCAGAGGTAGCTAGACA-TTTTTTTTTTAATCAAG--CGGT--AGT----GA-------TGGTCATGAACAATTTCAA---AATCG---------TGAAATACTT------G-CAGGCAGTGTt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TATATACATAGTTAATGCGCGAAAATTAAAAAGAGATTGCACAACTAATTGAAAAGAATACATTTCCAAGATTTTCCCTGTCAATTTGCTGGTGTGTCATATATCTGAAACTGGTCGGGTCATCGAAACCCACTAAAGCAATACCTATAATTATGTAAGTTCCGCAGTAAAACTGAAACCTCGGCGAGTACATAGTCA
Unaligned ( gi|7 ): ATTTATTAAAACTAGTGCGGATCCACTTCAGACCTATTGATAATGGGTTCCGTGATTATTGAACGAGTCGGCGATACTACTTGAAATATACAATACCCAATAAAACTTTCTAATACAATCAGCAAAATACTCCTCCTTCTTTTGCATACCTTGTAGTCTTGAATCAGCGGTTGCTAGAAATTTCTTCAA
Unaligned ( gi|10 ): TCTTTCTTGTCAATTGGTAGTTAGTCCATTTGTATTAAAACTGTCGGCTCATCGAACCTACAAAAGTAGTGATCTTATATGAAGTTCCACAGTAAACTGAAAGGTCGCAGTACATACAGTCGGCAAA
Unaligned ( gi|11 ): TTCCCCCGTAAAAGTAAGTCACATTTTTGTATAAAATGTCGGCTCATCGAAACCTATAAATAGTAGTTATTATATGAAGTTCCAAGTAACGAAATGGTTGGCGAGTACATACAGTCGGCAAAA
Unaligned ( gi|16 ): CTAATTGAAAATAATACGTTTCAAAGAGGAAAGGAATATTTTCTCCCTGTCAATTGCTAGAGTGTGTCATATA
Unaligned ( gi|18 ): ATTTGCTTATCTGTAATTTATTCATCTAATAGTCCGCAAGTATTGAATCAAAGGTAG
Unaligned ( gi|21 ): ATTCTTCATTCTCTTACAAATGTAGTATTGA
Alignments
lowQualScore : 222 33333333 3333333333333333 3333333 111111 55555555555 1111111 55555555 1111 11 3333333333333 66666666666666666666666 1 222 1
lowQualScore : 0 333 6 66666666 3 2 1111111111111111 2 5 888 0 9999999 3 444444 5 5 55555555555 999 9999999 77 666 33 77 5 6 66666666 3 8 6 6 4444 6 6 11 7777777777777 00000000000000000000000 5 0 1 0 0 1 66666 5 999 3 5 8 333 0 0 2 3 0
lowQualScore : . ... . ........ . . ................ . . ... . ....... . ...... . . ........... ... ....... .. ... .. .. . . ........ . . . . .... . . .. ............. ....................... . . . . . . ..... . ... . . . ... . . . . .
lowQualScore : 2 222 5 22222222 2 5 2222222222222222 5 9 888 9 8888888 2 444444 0 7 55555555555 222 4444444 66 777 11 99 7 7 66666666 2 0 7 7 2222 7 7 00 0000000000000 00000000000000000000000 0 8 0 6 8 4 88888 0 444 0 7 9 000 1 8 5 2 0
consensus : TCAGCGGTAGCTGGA-A-TTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAANTTCAA---TAACGACTGAC-ACTGAAATACTT------A-CAGGTAGTGTG-A---AAT-----ATTATTT-GACTCTTTGG------NTTTTGT-TTCNT-ACTTTT--CAACAACA-ATT-CA--T---C-GCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCTGGT----A--------TTTACGAC-----ATACCTGTCGCC-TATATGAACCCCCGATGTTTTTTCAGCGATTTCCACAATGTCCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAG-TTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCT
Reference ( family-1106 ) : TCAGCGGTAGCTGGA-A-TTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAANTTCAA---TAACGACTGAC-ACTGAAATACTT------A-CAGGTAGTGTG-A---AAT-----ATTATTT-GACTCTTTGG------NTTTTGT-TTCNT-ACTTTT--CAACAACA-ATT-CA--T---C-GCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCTGGT----A--------TTTACGAC-----ATACCTGTCGCC-TATATGAACCCCCGATGTTTTTTCAGCGATTTCCACAATGTCCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAG-TTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCT
gi|1 : AAGTTCAACCATAACGACTGACGACTGAAATACTT------A-CAGGTAGTGTGAA---AATAAATGATTATTTGGACTAGTTGGGTATTTTTTTTGTGTTCGT-AC-GTT--CAA-AACA-ATT-CAATT---G-GTGGAG-AAACTTGTGTTTG-GTGTGAA----ACGCAATTTGGT-AGTGCTTCACCT-CTAGT----AAATTTACTTTTACGACATGTAATACCTGTTGCCGTATATGAAGCCCCGA-----TTTC-----------CAACGTGCA--TGCG-TGTAA-T-TTACAAATCGTTTTCTCTT---TTGTCGGAACAA
gi|12 : aaattttctttcatgtcagatttgcgcatgtatgttacatttatctacaatttggtcgtcccatcgaaacctgacaaaagttcccgcagtgaaaattgaaagttggcgagtacatacacacccgggaatacacacattcatgtagatactttctaaattaagtatatcagcaaaatactgctacctcgttagtattgaatcagcggttgctagacattttccttcaa----TG-------T--TCATGAACAACTTCAA---TAACG---------TGAA-TGC--------A-C--------TG-A------------TTATTT-G---CTTT----------TTCGG-TTC------TTC--CAACAACA-ATT-CA--------AGGGAT-AAACTT-T-TTAA-ATTTGAA----AC-CAGGTCGGT-AGTg
gi|13 : -TGTTTG-GTGTGAA----AT-CAATTTGGT-AGTGCT--TCATGCTGGTATAAA--------TTTAAGAC-----ATA---------------GAACCCCCGATATTGTTTCAGCAATTTCCACAAAGTCCACGTGCG-TGTtc
gi|14 : GGTAGCTTGA----TTCTT--------AAGACCGCTCTGGG----TAGTAATATT--TTATGAACAA-TTCAA---TGACG-------ACTGAAATCTCT------ATCAG--AGTGTG-G---AAT-----
gi|15 : gGCGGTAGCTGAA-A-TTT-TT--------AAGACCGCTCTGGTAGTATAA------T--TTATAAA--ACTTCAA---T-------GAG-ACTTAAATACTT------A-CAGGTAGTGTG-A---Att
gi|17 : ATGTCCATGTGCGCTGTAAGTATTACACCG-GTTTCCCCCTGC-TTGCAAAAACAAA-GCTGTAAAGATG-TAAAtttt
gi|19 : CAATTTCCACGTGCG-TGTAT-T-TTACACCT-GCTT--CTCTA--TTGTCAAAt
gi|2 : TCAGCGGAAGCTGGA-AATTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAACTTCAA---TGACGACTACC-AGTAAAATACTT------A-CAGGTAGTGTG-A-----------ATTATTT-ACCTCTTTGG------ATTTTGT-TTCTT-ATTTTT--CAACAACA-ATT-CA--T---CTGCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCAGGA----A--------TCTATGAC-----ATAC----CGCT-TACATGAA--CCCGATGTTTTTACAGCGATTTCCACAATGTTCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAGCTTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCTggat
gi|20 : CAATTTCCACGTGCG-TGTAT-T-TTACACCT-GCTT--CTCTA--TTGTCAAA
gi|3 : ----TA-------T--TTCTTCAAAAGTTCAA---TAACGACTGACGACTGAAATACTTTAATATA-CAGGTAGTGTG-ATTAAATTG---ATTATTT-GACTAATTGG------TTTTTGT-TCCGT-ACTTTC--CAACAACA-ATggat
gi|4 : aaagttccgcggtgaaattgaaagatcggcgagtatatatatatatacacacccgggatagaactttctaatacagtcagcaaaatactcttccttcatttgcatacctcgG------ATTTTGT-TTCCTTATTTTTATCACTAACA-ATTGCA--TGATCAGCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTAGT-TGTGCT--GCATGCTGGT----A--------TTTACGAC-----ATACCTATCGCC-TGTATGAACCCCCGATGATTATTCAGCAATTTCCACAATGTGCACGTGCG-TGCAA-T-TTACATTT-GTTTCTTTCTAGCTTGTCAAAAC--AGGCAGCATAGGTG-TAGAA
gi|5 : -----ATTATTT-ACCTCTTTGG------ATTTTGA-TTCTT-AATTTT--CAACAACATATT-CA--------GGGGAGAAAACTT-TGTTTATGTGTGAAAGAGAT-GAATTTGGTAAGTGCT--ACATGCTGGT----A--------TTTACGA-----------TG--------------CCC---ATGTTTTTTCAGC-AT----------TCCACGTGCG-TGTAA---TTACA-CT-GTTTTCCCCTAG--TATC--AACAAAGGCTGT-AATGTGTTAGAAATTCTCT
gi|8 : AAGTTCAA---TAACGACTGACTACTGAA---CTT------A-CAGGTTGTGTG-ATTAAACTG---ATTATTT-GACTCTTTGG------TTTTTGA-TCCGT-ACTTTT--CAACAATA-ATT-aa
gi|9 : agaactttctaatacagtcagcaaaatacttgtccttcttttgcatacctcgtagtattgaattagcggttgctagaaatttcttcaaTCAGAGGTAGCTAGACA-TTTTTTTTTTAATCAAG--CGGT--AGT----GA-------TGGTCATGAACAATTTCAA---AATCG---------TGAAATACTT------G-CAGGCAGTGTt
blockSeqs : AA C TTTTAATC A C TAGTAATATT C C . ACTGACG A TAATAT T . TTAAATTG AC A G CTT TT AT T G TGATCA G A . T AGAG . A . ATAAA ATACCTATCGCCTGTAT C T A TTCCA C GTA C . C AGC G A T
blockSeqs : CA T . A C AGTATAAT C C . ACTGACT A . . . TTAAACTG GA T T TT CT . . . TCT C . . . . . . . A ATACCGCTTACAT C T G TTCCA . T C . C AGC G A .
blockSeqs : A . . . . GATGG A C . ACTACC A . . . AAT AC A T GT TT . . . . C . . . . . . . A ATA C A A TTCCA . T C . C GC G . .
blockSeqs : TAT C G . GAG A . . . . GA A T TT AT . . . . G . . . . . . . A TG . T . . . T C . T AG
blockSeqs : TAT . G . . A . . . . G T A GT CT . . . . . . . . . T T . . A
blockSeqs : T . . . . . . . A . . . . . . . . . A
blockSeqs : . . . . . . .
blockSeqCons : *** A****** AAC******** GN* A****** N* CT T******* ** A************ ATATG****************** TTCCA AGC
originalCons : TCAGCGGTAGCTGGA-A-TTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAANTTCAA---TAACGACTGAC-ACTGAAATACTT------A-CAGGTAGTGTG-A---AAT-----ATTATTT-GACTCTTTGG------NTTTTGT-TTCNT-ACTTTT--CAACAACA-ATT-CA--T---C-GCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCTGGT----A--------TTTACGAC-----ATACCTGTCGCC-TATATGAACCCCCGATGTTTTTTCAGCGATTTCCACAATGTCCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAG-TTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCT
finalCons : TCAGCGGTAGCTGGA-A-TTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAANTTCAA---TAACGA------ACTGAAATACTT------A-CAGGTAGTGTG-AAAC--------ATTATTTGN-CTCTTTGGA------TTTTGN-TTCNT-ACTTTT--CAACAACA-ATT-CAT-------GCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCTGGTA------------TTTACGACATATG------------------GAACCCCCGATGTTTTTTCAGCGATTTCCACAATGTCCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAGCTTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TATATACATAGTTAATGCGCGAAAATTAAAAAGAGATTGCACAACTAATTGAAAAGAATACATTTCCAAGATTTTCCCTGTCAATTTGCTGGTGTGTCATATATCTGAAACTGGTCGGGTCATCGAAACCCACTAAAGCAATACCTATAATTATGTAAGTTCCGCAGTAAAACTGAAACCTCGGCGAGTACATAGTCA
Unaligned ( gi|7 ): ATTTATTAAAACTAGTGCGGATCCACTTCAGACCTATTGATAATGGGTTCCGTGATTATTGAACGAGTCGGCGATACTACTTGAAATATACAATACCCAATAAAACTTTCTAATACAATCAGCAAAATACTCCTCCTTCTTTTGCATACCTTGTAGTCTTGAATCAGCGGTTGCTAGAAATTTCTTCAA
Unaligned ( gi|10 ): TCTTTCTTGTCAATTGGTAGTTAGTCCATTTGTATTAAAACTGTCGGCTCATCGAACCTACAAAAGTAGTGATCTTATATGAAGTTCCACAGTAAACTGAAAGGTCGCAGTACATACAGTCGGCAAA
Unaligned ( gi|11 ): TTCCCCCGTAAAAGTAAGTCACATTTTTGTATAAAATGTCGGCTCATCGAAACCTATAAATAGTAGTTATTATATGAAGTTCCAAGTAACGAAATGGTTGGCGAGTACATACAGTCGGCAAAA
Unaligned ( gi|16 ): CTAATTGAAAATAATACGTTTCAAAGAGGAAAGGAATATTTTCTCCCTGTCAATTGCTAGAGTGTGTCATATA
Unaligned ( gi|18 ): ATTTGCTTATCTGTAATTTATTCATCTAATAGTCCGCAAGTATTGAATCAAAGGTAG
Unaligned ( gi|21 ): ATTCTTCATTCTCTTACAAATGTAGTATTGA
Alignments
lowQualScore : 222 33333333 3333333333333333 666666666666 111111 66666666666666 2222222 4444444444 1111 11 3333333333333 99999999999999999999 11 111 111 222 1
lowQualScore : 0 333 6 66666666 3 2 1111111111111111 2 5 888 333333333333 3 444444 5 66666666666666 999 0000000 66 666 33 77 5 6 8 6666666666 8 6 6 4444 6 6 11 7777777777777 0 33333333333333333333 33 444 1 1 444 6 0 55 5 999 3 5 8 000 0 0 2 3 0
lowQualScore : . ... . ........ . . ................ . . ... ............ . ...... . .............. ... ....... .. ... .. .. . . . .......... . . . .... . . .. ............. . .................... .. ... . . ... . . .. . ... . . . ... . . . . .
lowQualScore : 2 222 5 22222222 2 5 2222222222222222 5 9 888 222222222222 2 444444 0 99999999999999 555 4444444 77 777 11 99 7 7 0 2222222222 0 7 7 2222 7 7 00 0000000000000 8 88888888888888888888 22 000 4 0 000 4 8 66 0 444 0 7 9 777 1 8 5 2 0
consensus : TCAGCGGTAGCTGGA-A-TTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAANTTCAA---TAACGACTGAC-AC---TGAAATACTT------A-CAGGTAGTGTGA---AA---------ATTATTT-GACTCTTTGGN------TTTTG-NTTCNT-ACTTTT--CAACAACA-ATT-C-AT--G-----CGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCTGGTA--------T----TTACGACATA---------T-G--T----GAACCCCCGAT---GTTTTTTCAG---CGATTTCCACAATGTCCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAGCTTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCT
Reference ( family-1106 ) : TCAGCGGTAGCTGGA-A-TTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAANTTCAA---TAACGA------AC---TGAAATACTT------A-CAGGTAGTGTGA---AA------C--ATTATTT-GNCTCTTTGGA------TTTTG-NTTCNT-ACTTTT--CAACAACA-ATT-C-AT--G-----CGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCTGGTA--------T----TTACGACATA---------T-G-------GAACCCCCGAT---GTTTTTTCAG---CGATTTCCACAATGTCCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAGCTTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCT
gi|1 : AAGTTCAACCATAACGACTGACGAC---TGAAATACTT------A-CAGGTAGTGTGA---AAATAAATG--ATTATTTGGACTAGTTGGGTATTTTTTTTGTGTTCGT-AC-GTT--CAA-AACA-ATT-CAATTGG-----TGGAG-AAACTTGTGTTTG-GTGTGAA----ACGCAATTTGGT-AGTGCTTCACCT-CTAGTAAATTTACTT----TTACGACATG---------T----------AATACCTGTTGCCGTATATGAAGCCCCGATTTC--CAACGTGCA--TGCG-TGTAA-T-TTACAAATCGTTTTCTCTT---TTGTCGGAACAA
gi|12 : aaattttctttcatgtcagatttgcgcatgtatgttacatttatctacaatttggtcgtcccatcgaaacctgacaaaagttcccgcagtgaaaattgaaagttggcgagtacatacacacccgggaatacacacattcatgtagatactttctaaattaagtatatcagcaaaatactgctacctcgttagtattgaatcagcggttgctagacattttccttcaa----TG-------T--TCATGAACAACTTCAA---TAACG------------TGAA-TGC--------A-C--------TGA---------------TTATTT-G---CTTT----------TTCG-GTTC------TTC--CAACAACA-ATT-C-AA--G------GGAT-AAACTT-T-TTAA-ATTTGAA----AC-CAGGTCGGT-AGTg
gi|13 : -TGTTTG-GTGTGAA----AT-CAATTTGGT-AGTGCT--TCATGCTGGTA--------TAAATTTAAGACATA-------------------GAACCCCCGAT---ATTGTTTCAG---CAATTTCCACAAAGTCCACGTGCG-TGTtc
gi|14 : GGTAGCTTGA----TTCTT--------AAGACCGCTCTGGG----TAGTAATATT--TTATGAACAA-TTCAA---TGACG-------AC---TGAAATCTCT------ATCAG--AGTGTGG---AA------
gi|15 : gGCGGTAGCTGAA-A-TTT-TT--------AAGACCGCTCTGGTAGTATAA------T--TTATAAA--ACTTCAA---TGA--G------AC---TTAAATACTT------A-CAGGTAGTGTGA---Attt
gi|17 : ATGTCCATGTGCGCTGTAAGTATTACACCG-GTTTCCCCCT-GCTTGCAAAAACAAA-GCTGTAAAGATG-TAAAtttt
gi|19 : CAATTTCCACGTGCG-TGTAT-T-TTACACCT-GCTT--CTCTA--TTGTCAAAt
gi|2 : TCAGCGGAAGCTGGA-AATTTCTT--------AAGACCGCTCTGGT----TA-------T--TTATGAACAACTTCAA---TGACGACT----ACCAGTAAAATACTT------A-CAGGTAGTGTGA---A-----------TTATTT-ACCTCTTTGGA------TTTTG-TTTCTT-ATTTTT--CAACAACA-ATT-C-ATCTG-----CGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTGGT-AGTGCT--ACATGCAGGAA--------T----CTATGACATA---------CCGCTTACATGAACCC--GAT---GTTTTTACAG---CGATTTCCACAATGTTCACGTGCG-TGTAA-T-TTACACCT-GTTTCCCCCTAGCTTGTCAAAACAAAGGCTGTAAAGGTG-TAGAAATTCTCTggat
gi|20 : CAATTTCCACGTGCG-TGTAT-T-TTACACCT-GCTT--CTCTA--TTGTCAAA
gi|3 : ----TA-------T--TTCTTCAAAAGTTCAA---TAACGACTGACGAC---TGAAATACTTTAATATA-CAGGTAGTGTGATTAAA------TTGATTATTT-GACTAATTGGT------TTTTG-TTCCGT-ACTTTC--CAACAACA-ATggat
gi|4 : aaagttccgcggtgaaattgaaagatcggcgagtatatatatatatacacacccgggatagaactttctaatacagtcagcaaaatactcttccttcatttgcatacctcgGA------TTTTG-TTTCCTTATTTTTATCACTAACA-ATTGC-AT--GATCAGCGGAG-AAACTT-TGTTTG-GTGTGAA----AC-CAATTTAGT-TGTGCT--GCATGCTGGTA--------T----TTACGACATACCTATCGCCT-GTAT----GAACCCCCGAT---GATTATTCAG---CAATTTCCACAATGTGCACGTGCG-TGCAA-T-TTACATTT-GTTTCTTTCTAGCTTGTCAAAAC--AGGCAGCATAGGTG-TAGAA
gi|5 : --ATTATTT-ACCTCTTTGGA------TTTTG-ATTCTT-AATTTT--CAACAACATATT-C-A---G-----GGGAGAAAACTT-TGTTTATGTGTGAAAGAGAT-GAATTTGGTAAGTGCT--ACATGCTGGTA--------T----TTACG----A---------T-G----------CCC---AT---GTTTTTTCAG---C-AT----------TCCACGTGCG-TGTAA---TTACA-CT-GTTTTCCCCTAG--TATC--AACAAAGGCTGT-AATGTGTTAGAAATTCTCT
gi|8 : AAGTTCAA---TAACGACTGACTAC---TGAA---CTT------A-CAGGTTGTGTGATTAAA------CTGATTATTT-GACTCTTTGGT------TTTTG-ATCCGT-ACTTTT--CAACAATA-ATT-aa
gi|9 : agaactttctaatacagtcagcaaaatacttgtccttcttttgcatacctcgtagtattgaattagcggttgctagaaatttcttcaaTCAGAGGTAGCTAGACA-TTTTTTTTTTAATCAAG--CGGT--AGT----GA-------TGGTCATGAACAATTTCAA---AATCG------------TGAAATACTT------G-CAGGCAGTGTt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TATATACATAGTTAATGCGCGAAAATTAAAAAGAGATTGCACAACTAATTGAAAAGAATACATTTCCAAGATTTTCCCTGTCAATTTGCTGGTGTGTCATATATCTGAAACTGGTCGGGTCATCGAAACCCACTAAAGCAATACCTATAATTATGTAAGTTCCGCAGTAAAACTGAAACCTCGGCGAGTACATAGTCA
Unaligned ( gi|7 ): ATTTATTAAAACTAGTGCGGATCCACTTCAGACCTATTGATAATGGGTTCCGTGATTATTGAACGAGTCGGCGATACTACTTGAAATATACAATACCCAATAAAACTTTCTAATACAATCAGCAAAATACTCCTCCTTCTTTTGCATACCTTGTAGTCTTGAATCAGCGGTTGCTAGAAATTTCTTCAA
Unaligned ( gi|10 ): TCTTTCTTGTCAATTGGTAGTTAGTCCATTTGTATTAAAACTGTCGGCTCATCGAACCTACAAAAGTAGTGATCTTATATGAAGTTCCACAGTAAACTGAAAGGTCGCAGTACATACAGTCGGCAAA
Unaligned ( gi|11 ): TTCCCCCGTAAAAGTAAGTCACATTTTTGTATAAAATGTCGGCTCATCGAAACCTATAAATAGTAGTTATTATATGAAGTTCCAAGTAACGAAATGGTTGGCGAGTACATACAGTCGGCAAAA
Unaligned ( gi|16 ): CTAATTGAAAATAATACGTTTCAAAGAGGAAAGGAATATTTTCTCCCTGTCAATTGCTAGAGTGTGTCATATA
Unaligned ( gi|18 ): ATTTGCTTATCTGTAATTTATTCATCTAATAGTCCGCAAGTATTGAATCAAAGGTAG
Unaligned ( gi|21 ): ATTCTTCATTCTCTTACAAATGTAGTATTGA