lowQualScore : 4 4 2 2 77777777777777777777 22 4 1 11 111 22 1111 2 11 3333 44444444444444444444444444 222222222 111 22222 1 1 8888888888888 1111 1 333333 2222222222222 22222 66666666666666666 11111 2222 44444444444 1
lowQualScore : 0 2 2 99 0 6 6 33333333333333333333 99 11 0 6 7 11 777 3 77 4 5555 8 5 7 22 3 5555 44444444444444444444444444 222222222 000 55 88888 0 8 0 66 9 0 4 9999999999999 5 0000 0 4 0 666666 1111111111111 3 00000 99 44444444444444444 44444 77 55 1111 6 99999999999 1 3
lowQualScore : . . . .. . . . .................... .. .. . . . .. ... . .. . .... . . . .. . .... .......................... ......... ... .. ..... . . . .. . . . ............. . .... . . . ...... ............. . ..... .. ................. ..... .. .. .... . ........... . .
lowQualScore : 0 5 5 00 0 7 7 77777777777777777777 77 77 0 0 3 00 777 7 00 0 0000 0 0 5 22 2 0000 88888888888888888888888888 333333333 000 77 66666 3 7 7 99 0 5 5 5555555555555 0 6666 0 1 2 555555 8888888888888 6 00000 22 22222222222222222 33333 99 77 0000 7 00000000000 0 3
consensus : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANAGTGCGTTTGGTCACTTTGAGGGCTGAATAAGTCCTGAAGTA---A------GGTTGCGCTGGTCGGCTAGCCAT-CGTAA-TCTGACGCTTGGTAATAAGGGCTGAAT-A-GNCTGTACATCGNTGTCAAAGTGAGCTGGT---AA-ACTAACTGGTTAGAGACCTT-GGGTGATGGCAGTAACCCGGACCA-GTAGCTATAC---------------CCAA-GG------ACAT---TGGCAA-GGG-----ACCAAGTGTCCAAGGGACATT--GGCAAGGGAACCAAGTG--TC----CAG-GG-AC----ATTGGC-AAGGGG------CAAGTGTCNAG----------GGGACCAAG-----GG--ACATTGGC------G-GGGAG----GGGACCAA-----ATGTC--CAAGGGACATTGGCAAAG-G-ACCAAGTGTCCA--G-G--ACA-TGGCGAAGAGACC-AGTGTCCAG
Reference ( gi|2 ) : TAAGCCGCCTCAACTATCGCGTTGTCTTATAGGTAGGGACTATGG-GCATT-GGTCACTT-GAGGGCTGAATAAGTCCTGAAGTA-AGA------GGTTACGCCTGTTGGCTAGCCATACGTAAATCTGACACTTGGTAATAAGGGCTGAAT-A-GCCTGTAC-TCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTTGGGGTGATGGCAGTAA-CCGGACCA-GTAGCTATAC---------------CCAA-GG------ACAT---TGGCAA-GGG-----ACCAAGTGTTCAAGGGACATT--GTCAAGGGAGCCAAGT---TCG---CAGCGG-AC----ATTGGC-AAGGGA------CAAGTGTCAAG----------GGGACCAAG-----GG--ACATTGGC------GGGGGGG----GGGACCAA-----ATGTC--CAAGGGACATTGGCATCG-G-ACCAAATGTCCA--T-G--ACA-TGGCAAAGAGACC-AGTGTCCAG
gi|4 : TAAGCCGCCTCA-CTATCGCGTTGTCTTATAGGTAGGGACTATAGTGCATTTGGTCACTTTGAGGGCTGAATAAGTCCTGAAGTA-C-A------GGTTGCGCTGGTCGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAAT-AAGCCTGTACATCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTT-GGGTGATGGCAGTAACCCGGACCA-GTAGCTATAC---------------CCAAGGG------ACAT---TGGCAA-G
gi|8 : taaattctactggcataaaataaataaacaatagtgagaaaactgaaAAGCTGCCTCA-CTATAACGTTTTCTTATAGGTAGGGACTAGAGTGCGTTTGGTTACTTTGAAGGCTGAATAAGTCTTGAAGTAGAGATCTATAGATTGTGCTGGCTGGCTAGCTAT-TGTAA--CTGACGCTTGGTAATAAGGGCTAAATAA-GACTACAC--CGTTGTCAAAGTGAGATTGT---AA-ACTAACTGGTTAGAGAC
gi|3 : TT-GGTCACGT-AGGGACTGGATAAG---------------------GTTGGGCTAGTTGGCTGTTCAT-CTTAATTCTGGCATTTGGT--------C---AT-A-GTCTGTACATCGGTATCAAAGAAAGCTAGGGAAAA-ACCAAATGCTCATGGATTTTGGGGCGA----AGT----CGAACCA-GT---TGT-------------------AA-TG------ACATACATTGTAA---------ACCACATG-TCTACGGACAT--------GGGAACCAAATG--TC----CTG-AA-AC----ATTGGC-ATGTAAC-----CAAGTGTCGAGAGATATAGCAGGGGCAAAGTGTCTGGATACACTGGCAAACAAGCGAGTGTATAGGGGC--A-----ATGTTAGCA------ATTGGCAAAA-G-ACCAAATGTCT------------------AGAAACG-AGTGTCTAG
gi|15 : C-CCGATGACAAAGTGAACTGGA---AACACCCACGGACAAGAGACCTC---TTGGTCGC-GTA----GGACCAGGTGACCAAAC---------------CCAA-AGGCTAGTACAC---TGGTAA-
gi|1 : CGCTGTCAGAGTGAGCTGGT---AA-ACTAGTTGGCTAGAGACCTT-GGGTGAAGGCAGTAACCCGGACCA-GTAGCTATACCAAGTGTCCAGGGGACCAAGGG------ACAT---TGGCAAGGGG-----ACCAAGTGTCCAAGGGACATT--GGCAAGGGAACCAAGTG--TC----CAAGGG-AC----ATTGGT-AAGGGGAC----CAAGTTTCAAG----------GG
gi|7 : acGGACCA---AG---TGT---------------CCAA-GGG-----ACAT---TGGCAT-CGG-----ACCAAATGTCC-ATGGACATT--GGCAAAGAGACCAAGT---atagtggtgtataagaccaattggccaagacacaattatatttagttagaatagagagaggaacgatagggaccgtagggttaaatggtaatttgtgattatttgtcttgattccttttccaatcgtagtaaatatattgattgtgcacattgatagtttgctaggtaacatgctattattgtttttagaaagacgtttaatatccaaaatcccgggtacattcggtaacgtgcccacagtaatagaccgctcggctggatacacgtt
gi|5 : gacattggcggggggggAC---------------CAAG-GG------ACAT---TGGCGG-GGGGGGGGACCAAATGTCCAAGGGACATT--GGCATCGGA-CCAAATG--TC----CA--TG-AC----A-TGGCAAAGAGA------CCAGTGTCCAG----------Ggtccaggtatagtgacgaaaataccaattggccaagacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|7 : caagtgtcaaggggG------ACAT---TGGCGG-GGGGGGGGACCAAGTGTCCAAGGGACATT--GGCATCGGA-CCAAATG--TC----CA-TGG-AC----ATTGGCAAAGAGAC-----CAAGTGTCCAG----------Gctatagtgacgaaaataccattggccaaagacacgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|14 : AA-GGT-----AACAAGCAT-CAAGGAACTTT--GGAAAGGATACCAAGTG--TC----CGG-GA-AG----ATTGAC-AAGGGA------Ctatagtgacgaaaataccaattggccaagacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|9 : aacaaacattgtcatggggaccaaatgccaGG-----ACCAAGTGTAC----GACGTTTGGTCAAGGGAA-CAAGTGTATAGGACCAGAGGTACCGCTATTGAC-A------------AAGTGTCAGG----------cgagt
gi|5 : gtagggttaagggacacgggggtaggttgatagacataggtgtaaagtggtcaT--GTCAAGGGGACCAAG--------------GG-AC----ATTGGC-GGGGGGGGGGACCAAATGT------------------CCAAG-----GG--ACATTGGC-----------AT----CGGACCAA-----ATGTC--CA--TGACA-TGGCAAAGAG-ACC-AGTGTCCA--G-GCTATAGTGACGAAAATACC-ATTGGCCActaagtgcagggtcatttggactg
gi|7 : caagG-AC----ATTGGC-GGGGGGGGGGACCAAGTGTC------------------CAAG-----GG--ACATTGGC-----------AT----CGGACCAA-----ATGTC--C-ATGGACATTGGCAAAGAG-ACCAAGTGTCCA--G-GT-ATAGTGACGAAAATACC-AATaagacacgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|1 : ------CAAGTGTCCAG----------GGGACCAAG-----GG--ACATTGGC----------AAG----GGGACCAA-----GTGTC--CAAGGGACATTGGCAAGG-GAACCAAGTGTCCAAGG-G--ACATTGGTAAGGGGACCAAGTTTCAAGtggccaagacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|5 : accgctgtcagagtgagctggtaaactagttggctagagaccttgggtgaaggcagtaacccggaccagtagctatac------CAAGTGTCAAG----------GGGACCAAG-----GG--ACATTGGC------GGGGGGG----GGGACCAA-----ATGTC--CAAGGGACATTGGCATCG-G-ACCAAATGTCCA--T-G--ACA-TGGCAAAGAGACC-AGTGTCCAGggatagtggtgtataagaccaattggccaagacacaattatatttagttagaatagagagaggaacgatagggaccgtagggttaaatggtaatttgtgattatttgtcttgattccttttccaatcgtagtaaatatattgattgtgcacattgatagtttgctaggtaacatgctattattgtttttagaaagacgtttaatatccaaaatcccgggtacattcggtaacgtgcccacagtaatagaccgctcggctggatacacgtt
gi|7 : G--ACATTGGC------GGGGGGG----GGGACCAA-----GTGTC--CAAGGGACATTGGCATCG-G-ACCAAATGTCCA--TGG--ACATTGGCAAAGAGACCAAGTGTCCAGgctatagtgacgaaaataccattggccaaagacacgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|4 : GGACCAGTAGCTATACC--CAAGGGACATTGGCAgtatagtgacgaaaataccaattggccaagacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): CCAGTGGTACAAGTTTTCATATGTCAATAGACTTCCGGGGGTTATTTGATTTATAGAATCATCGTAAATATATTGATTTAGTAAATAGATCTAGCCTAGAGCACATAAATTTTGGTCATTGATTCCAACTGTAAAGTAACAGTTTCTTTTCAATCATTTGTCAGAATATAAAATCCAGAAATCCTGAGTGTAATCAGGTACATGCCCACAGAAAATATACCGCTTGGCTGGGGTGCACGT
Unaligned ( gi|10 ): TAGACTCCAGTAGCAAACTAAGATAATGAACAACCTGAATAATCCGTCTCACTATTGTGATTTCTTATTGGCAAAGACCAGGGTACATTTTGTTCCTTCGGGGTTTATAAAGTCTTGAAGCATTTGTTGTGCCGGTTGGTTGA
Unaligned ( gi|11 ): TCCAATCGTAGTAAATATATTGATTGTGCAGTTTGATATTACTTTTTTTAGAAAGACATTTTTAACTTGTTGATATCCAAAATCCTAGGTGTGTCCGGTAACGTGCCCACAGTAATAGACCGCT
Unaligned ( gi|12 ): ATAGGTAACAGGCTATTATATTTTTTAGAAAGACATTTAACTTGTTAATATCCAAAATCCCGGGTGTATCCGGTAACGTGCCGACAGTAATATACCGCTCGGCTGGACACACGTT
Unaligned ( gi|13 ): CTAGGTAACAGCTATTATTTTTTTAGAGACATTCAATTGATTAATTTCAAAATATCGGGTGTAATTGGTAACGTGCCCATAGTAATAGACCGCTCGGCTGGAACA
Unaligned ( gi|16 ): CGTTTTAATCATTTGTTAGAATATAAAATCAAGAGTCGGGTACGTGCCCGCAGGAAATACACCCAGGGTGGGG
Unaligned ( gi|17 ): AAATCCAGAGATCCTGAGTGAAATCAGGTACGTGCCCGCAGGAAATATACCGATCGGCTGGGGTGCAC
Unaligned ( gi|18 ): AGAGTTTAAGTAGAAGAGACACAGGGTAGGTCAAATGGCATAGGTGCACAAGTGATTAGGACCAAGT
Unaligned ( gi|19 ): AGATCCTGAGTGTATTCAGGTACGTGCCTGCAGAAAATATACCGCTCGTCTGGGGTGCACGTT
Unaligned ( gi|20 ): AGGTAACAGGCTATTATTTTTTTTAGAGACATTCAATTTGTTAATATCCAAAAT
Unaligned ( gi|21 ): GGTTAAGGGACACGGGGGTAGGTCAATATATATAGGTGTACAAGTG
Alignments
lowQualScore : 1 555555555 1 1 222 111 111 2222222 111 11 1111 111111111 6666666666666666666666 1111 222222 111111111 33333333 33333 1111 11111 1 22222222 1111 1 1
lowQualScore : 0 0 1 1 3 55 3 3 999999999 1 2 0 0 333 2 3 33 111 1 3 0 1 111 6 3 8 8 6 99999 2 1111111 111 55 4444 1 888888888 5 66 5 0 1 6666666666666666666666 88 1 7777 222222 777777777 5 6 1 11111111 5 77777 6 2222 88888 3 1 44444444 6 99 3333 4 99999 6 2 0
lowQualScore : . . . . . .. . . ......... . . . . ... . . .. ... . . . . ... . . . . . ..... . ....... ... .. .... . ......... . .. . . . ...................... .. . .... ...... ......... . . . ........ . ..... . .... ..... . . ........ . .. .... . ..... . . .
lowQualScore : 0 2 0 0 2 22 2 2 000000000 4 8 0 0 222 0 2 55 000 0 2 8 0 777 7 0 0 0 0 55555 5 7777777 777 88 2222 0 333333333 7 44 7 8 4 2222222222222222222222 88 4 0000 000000 999999999 7 7 7 66666666 7 00000 7 1111 00000 3 7 22222222 7 22 3333 8 55555 0 0 0
consensus : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTTGAGGGCTGAATAAGTCCTGAAGTAN--------AGGTTGCGCCGGTTGGCTAGCCAT-CGT-AA-T-CTGACACTTGGTAATAAGGGCTGAAT-A-GCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTT-GGG-TGATGGCAGT--AACCCG-------GAC---CA--GTAG--C-TATACCCAA-GG------ACATT-GG-CA-AGGGACCAAGTGT------C---------------CA-AGGGAC----ATTGGCAAGG----GGACCAAGTGTC-C-AG-GGACA-TTGG-CAAGGG-A------C-AAGTGTC-A--GGACCA-AGGGAC----ATTGGC-GGGGGGGGG-ACCAAGTGTCCAAGGG--------AC-ATTG--GCATCG-GACCAAATGTCCA-GG--ACA-TGGCAAAGAGACC-AGTGTCCAG
Reference ( family-10704 ) : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANAGTGCGTTTGGTCACTTTGAGGGCTGAATAAGTCCTGAAGTA---------AGGTTGCGCTGGTCGGCTAGCCAT-CGT-AA-T-CTGACGCTTGGTAATAAGGGCTGAAT-A-GNCTGTACATCGNTGTCAAAGTGAGCTGGT---AA-ACTAACTGGTTAGAGACCTT-GGG-TGATGGCAGT--AACCCG-------GAC---CA--GTAG--C-TATACCCAA-GG------ACATT-GG-CA-AGGGACCAAGTGT------C---------------CA-AGGGAC----ATTGGCAAGG----GAACCAAGTGTC-C-AG-GGACA-TTGG-CAAGGG-G------C-AAGTGTCNAGGGGACCA-AGGGAC----ATTGGC-GGGGAGGGG-ACCAAATGTCCAAGGG--------AC-ATTG--GCAAAG-GACCAAGTGTCCA-GG--ACA-TGGCGAAGAGACC-AGTGTCCAG
gi|1 : ACCGCTGTCAGAGTGAGCTGGT---AA-ACTAGTTGGCTAGAGACCTT-GGG-TGAAGGCAGT--AACCCG-------GAC---CA--GTAG--C-TATA-CCAA-G-----------T-GT-CC-AGGG-------GA------C---------------CA-AGGGAC----ATTGGCAAGG----GGACCAAGTGTC-CAAG-GGACA-TTGG-CAAGGG-AAC----C-AAGTGT--------CCA-AGGGAC----ATTGGT----AAGGGG-ACCAAGT-TTCAAGGG--------AT-AGTGGTGTATAA-GACCAATTGGCCA-AG--ACA-
gi|10 : TAATCCGTCTCA-CTATTGTGATTTCTTATTGGCAAAGACCAGGGTACATTTTGTTCCTTCG-GGGTTTATAAAGTCTTGAAGCAT--------TTGTTGTGCCGGTTGGTTcaattatatttagttagaatagagagaggaacgatagggaccgtagggttaaatggtaatttgtgattatttgtcttgattccttttccaatcgtagtaaatatattgattgtgcacattgatagtttgctaggtaacatgctattattgtttttagaaagacgtttaatatccaaaatcccgggtacattcggtaacgtgcccacagtaatagaccgctcggctggatacacgtt
gi|14 : tagactccagtagcaaactaagataatgaacaacctgaa------ACATT-GT-CATGGGGACCAAATGC------CAAAGGTAACAAGCATCA-AGGAAC----TTTGGAAAGG----ATACCAAGTGTC-C-GG-GAAGA-TTGA-CAAGGG-A------C-ga
gi|15 : aacaaCGATGACAAAGTGAACTGGA---AACACCCACGGACAAGAGACCTC---T-TGGTCGC-GT--A----G-------GAC---CAG-GTGA--C-CAAACCCAA-AGGCTAGTACACT-GG-TA-Acgagt
gi|2 : ccTAAGCCGCCTCAACTATCGCGTTGTCTTATAGGTAGGGACTATGG-GCA-TTGGTCAC-TTGAGGGCTGAATAAGTCCTGAAGTAAG-------AGGTTACGCCTGTTGGCTAGCCATACGTAAA-T-CTGACACTTGGTAATAAGGGCTGAAT-A-GCCTGTAC-TCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTTGGGG-TGATGGCAGT--AA-CCG-------GAC---CA--GTAG--C-TATACCCAA-GG------ACATT-GG-CA-AGGGACCAAGTGT------T---------------CA-AGGGAC----ATTGTCAAGG----GAGCCAAGT-TCGC-AGCGGACA-TTGG-CAAGGG-A------C-AAGTGTCAAGGGGACCA-AGGGAC----ATTGGCGGGGGGGGGG-ACCAAATGTCCAAGGG--------AC-ATTG--GCATCG-GACCAAATGTCCA-TG--ACA-TGGCAAAGAGACC-AGTGTCCAG
gi|3 : CTGGA-TA---------AGGTTGGGCTAGTTGGCTGTTCAT-CTT-AA-TTCTGGCATTTGGT--------C---AT-A-GTCTGTACATCGGTATCAAAGAAAGCTAGGGAAAA-ACCAAATGCTCATGGATTTT-GGGGCGA----AGTCGAACCAGTTGTAATGACATACATTGTAAACCACATGTCTAC-GG------ACAT--------GGGAACCAAATGT------C---------------CT--GAAAC----ATTGGCA-TG----TAACCAAGTGTC-G-AG-AGATA--TAG-C-AGGG-G------CAAAGTGTCT---GGAT-------AC----ACTGGC-AAACAAG-----CGAGTGTATAGGGGCAATGTTAGCAATTG--GCAAAA-GACCAAATGTCTA-GA--A
gi|4 : ttggtcacgtagggaTAAGCCGCCTCA-CTATCGCGTTGTCTTATAGGTAGGGACTATAGTGCATTTGGTCACTTTGAGGGCTGAATAAGTCCTGAAGTAC--------AGGTTGCGCTGGTCGGCTAGCCAT-CGT-AAAT-CTGACACTTGGTAATAAGGGCTGAAT-AAGCCTGTACATCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTT-GGG-TGATGGCAGT--AACCCG-------GAC---CA--GTAG--C-TATACCCAAGGG------ACATT-GG-CA-AGacgagtgtctag
gi|5 : taaattctactggcataaaataaataaacaatagtgagaaaactgaa------C-AAGTGTCAAGGGGACCA-AGGGAC----ATTGGC-GGGGGGGGGGACCAAATGTCCAAGGG--------AC-ATTG--GCATCG-GACCAAATGTCCA-TG--ACA-TGGCAAAGAGACC-AGTGTCCAG
gi|5 : TGTCAAGG----GGACCAAG----------GGACA-TTGG-CGGGGG-GGGGGACC-AAATGTC--------CA-AGGGAC----ATTGGC-----ATCGG-ACCAAATGTCCA--TG--------AC-AT-G--GCAAAGAGACCA-GTGTCCA-GGCTATAGTGACGAAAATACC-ATTGGCCAgctatagtgacgaaaataccattggccaaagacacgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|7 : caagGAC----ATTGGC-GGGGGGGGGGACCAAGTGTCCAAGGG--------AC-ATTG--GCATCG-GACCAAATGTCCATGG--ACATTGGCAAAGAGACCAAGTGTCCAGaagacacgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|8 : AAGCTGCCTCA-CTATAACGTTTTCTTATAGGTAGGGACTAGAGTGCGTTTGGTTACTTTGAAGGCTGAATAAGTCTTGAAGTAGAGATCTATAGATTGTGCTGGCTGGCTAGCTAT-TGT-AA---CTGACGCTTGGTAATAAGGGCTAAATAA-GAC--TACACCGTTGTCAAAGTGAGATTGT---AA-ACTAACTGGTTAGAGACgtatagtgacgaaaataccaattggccaagacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|9 : AGT--GGTCAG-------GAC---CA----AG----TGTAC------G------ACGTTTGGTCA-AGGGAACAAGTGTATAGGAC---------------CAGAGGTACCGCTATTGACAAAGTGTCAGGCTAAGTG---C-AG-GGTCA-TT
gi|9 : gtagggttaagggacacgggggtaggttgatagacataggtgtaaTGGTCAGG------ACCAAGTGTA-C-----GACGTTTGGTCAAGGGAA------C-AAGTGTATA--GGACCAGAGGTACCGCTATTGAC-tggactg
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAGTGGTACAAGTTTTCATATGTCAATAGACTTCCGGGGGTTATTTGATTTATAGAATCATCGTAAATATATTGATTTAGTAAATAGATCTAGCCTAGAGCACATAAATTTTGGTCATTGATTCCAACTGTAAAGTAACAGTTTCTTTTCAATCATTTGTCAGAATATAAAATCCAGAAATCCTGAGTGTAATCAGGTACATGCCCACAGAAAATATACCGCTTGGCTGGGGTGCACGT
Unaligned ( gi|11 ): TCCAATCGTAGTAAATATATTGATTGTGCAGTTTGATATTACTTTTTTTAGAAAGACATTTTTAACTTGTTGATATCCAAAATCCTAGGTGTGTCCGGTAACGTGCCCACAGTAATAGACCGCT
Unaligned ( gi|12 ): ATAGGTAACAGGCTATTATATTTTTTAGAAAGACATTTAACTTGTTAATATCCAAAATCCCGGGTGTATCCGGTAACGTGCCGACAGTAATATACCGCTCGGCTGGACACACGTT
Unaligned ( gi|13 ): CTAGGTAACAGCTATTATTTTTTTAGAGACATTCAATTGATTAATTTCAAAATATCGGGTGTAATTGGTAACGTGCCCATAGTAATAGACCGCTCGGCTGGAACA
Unaligned ( gi|16 ): CGTTTTAATCATTTGTTAGAATATAAAATCAAGAGTCGGGTACGTGCCCGCAGGAAATACACCCAGGGTGGGG
Unaligned ( gi|17 ): AAATCCAGAGATCCTGAGTGAAATCAGGTACGTGCCCGCAGGAAATATACCGATCGGCTGGGGTGCAC
Unaligned ( gi|18 ): AGAGTTTAAGTAGAAGAGACACAGGGTAGGTCAAATGGCATAGGTGCACAAGTGATTAGGACCAAGT
Unaligned ( gi|19 ): AGATCCTGAGTGTATTCAGGTACGTGCCTGCAGAAAATATACCGCTCGTCTGGGGTGCACGTT
Unaligned ( gi|20 ): AGGTAACAGGCTATTATTTTTTTTAGAGACATTCAATTTGTTAATATCCAAAAT
Unaligned ( gi|21 ): GGTTAAGGGACACGGGGGTAGGTCAATATATATAGGTGTACAAGTG
Alignments
lowQualScore : 1 1 3333333333333 1 1 222 2 111 11 2222222 111 11 11 222222222 666666666666666 222222 22222222 333333 1111 2222222222 22222222 1 1
lowQualScore : 0 0 1 1 3 0 3 0 8 0 1 6666666666666 1 0 0 333 3 33 0 0 3 0 1 111 6 2 8 8 6 0 11 55 6666666 444 99 11 8 3 000000000 2 6 3 4 1 222222222222222 3 0 2 222222 6 6 88888888 888888 6 2222 5555555555 0 1 3 0 00000000 5 99 2 6 3 99999 6 0
lowQualScore : . . . . . . . . . . . ............. . . . ... . .. . . . . . ... . . . . . . .. .. ....... ... .. .. . . ......... . . . . . ............... . . . ...... . . ........ ...... . .... .......... . . . . ........ . .. . . . ..... . .
lowQualScore : 0 2 0 0 2 8 6 8 0 8 4 4444444444444 4 0 0 222 2 55 0 2 2 8 0 777 7 5 0 0 0 8 00 88 0000000 000 00 00 0 2 444444444 5 7 2 2 2 555555555555555 2 8 5 333333 7 7 55555555 555555 7 1111 9999999999 7 4 0 1 77777777 7 22 5 7 5 55555 0 0
consensus : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGG-CTGAATAAGTCCTGAAG--------TAT-AGGTTGCGCCGGTTGGCTAGCCAT-CGT-AA-T-CTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTT-GGG-TGATGGCAGT--AACCCG-------GAC---CA--GTAG--C-TATACCCAA-GG------ACATTGGCA-AGGGACCAAATGTC---------------CAAGGGACATTGGCAAGGGGACCAAGTGTC-C-AG-GGACA-TTGG-CAAGGG-A------CAAGTGT-CA---GGACCA-AGGGAC----ATTGGC-GGGG-GG--GGGACCAAGTGTCCAAGGG--------AC-ATTG--GCATCG-GACCAAATGTCCA-GG--ACA-TGGCAAAGAGACC-AGTGTCCAG
Reference ( family-10704 ) : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTTGAGGG-CTGAATAAGTCCTGAAG--------TAN-AGGTTGCGCCGGTTGGCTAGCCAT-CGT-AA-T-CTGACACTTGGTAATAAGGGCTGAAT-AGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTT-GGG-TGATGGCAGT--AACCCG-------GAC---CA--GTAG--C-TATACCCAA-GG------ACATTGGCA-AGGGACCAAGTGTC---------------CAAGGGACATTGGCAAGGGGACCAAGTGTC-C-AG-GGACA-TTGG-CAAGGG-A------CAAGTGT-CA---GGACCA-AGGGAC----ATTGGC-GGGG-GG--GGGACCAAGTGTCCAAGGG--------AC-ATTG--GCATCG-GACCAAATGTCCA-GG--ACA-TGGCAAAGAGACC-AGTGTCCAG
gi|1 : ACCGCTGTCAGAGTGAGCTGGT---AA-ACTAGTTGGCTAGAGACCTT-GGG-TGAAGGCAGT--AACCCG-------GAC---CA--GTAG--C-TATA-CCAA-G-----------TGTCC-AGGG-------GAC---------------CAAGGGACATTGGCAAGGGGACCAAGTGTC-CAAG-GGACA-TTGG-CAAGGG-AAC----CAAGTGT---------CCA-AGGGAC----ATTGGT----A-AG--GGGACCAAGT-TTCAAGGG--------AT-AGTGGTGTATAA-GACCAATTGGCCA-AG--ACA-
gi|10 : TAATCCGTCTCA-CTATTGTGATTTCTTATTGGCAAAGACCAGGGTACATTTTGTTCCTTCG-GGG-TTTATAAAGTCTTGAAG--------CAT-TTGTTGTGCCGGTTGGTTcaattatatttagttagaatagagagaggaacgatagggaccgtagggttaaatggtaatttgtgattatttgtcttgattccttttccaatcgtagtaaatatattgattgtgcacattgatagtttgctaggtaacatgctattattgtttttagaaagacgtttaatatccaaaatcccgggtacattcggtaacgtgcccacagtaatagaccgctcggctggatacacgtt
gi|14 : tagactccagtagcaaactaagataatgaacaacctgaa------ACATTGTCATGGGGACCAAATGCCAAAGGTAACAAGCATCAAGGAACTTTGGAAAGGATACCAAGTGTC-C-GG-GAAGA-TTGA-CAAGGG-A------Cga
gi|15 : aacaaCGATGACAAAGTGAACTGGA---AACACCCACGGACAAGAGACCTC---T-TGGTCGC-GT--A----G-------GAC---CAG-GTGA--C-CAAACCCAA-AGGCTAGTACACTGGTA-Acgagt
gi|2 : ccTAAGCCGCCTCAACTATCGCGTTGTCTTATAGGTAGGGACTATGG-GCATT-GGTCACTT-GAGGG-CTGAATAAGTCCTGAAG--------TAAGAGGTTACGCCTGTTGGCTAGCCATACGT-AAAT-CTGACACTTGGTAATAAGGGCTGAAT-AGCCTGTAC-TCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTTGGGG-TGATGGCAGT--AA-CCG-------GAC---CA--GTAG--C-TATACCCAA-GG------ACATTGGCA-AGGGACCAAGTGTT---------------CAAGGGACATTGTCAAGGGAGCCAAGT-TCGC-AGCGGACA-TTGG-CAAGGG-A------CAAGTGT-CAAGGGGACCA-AGGGAC----ATTGGCGGGGG-GG--GGGACCAAATGTCCAAGGG--------AC-ATTG--GCATCG-GACCAAATGTCCA-TG--ACA-TGGCAAAGAGACC-AGTGTCCAG
gi|3 : TTGGTCACGT--AGGGACTGGATAAG----------------------GTTGGGCTAGTTGGCTGTTCAT-CTT-AA-TTCTGGCATTTGGT--------C---AT-AGTCTGTACATCGGTATCAAAGAAAGCTAGGGAAAA-ACCAAATGCTCATGGATTTT-GGGGCGA----AGTCGAACCAGTTGTAATGACATACATTGTAAACCACATGTCTAC-GG------ACAT------GGGAACCAAATGTC---------------CT-GAAACATTGGCA-TGTAACCAAGTGTC-G-AG-AGATA--TAG-CAGGGG-C------AAAGTGT-CT---GGAT-------AC----ACTGGC-AAAC-AA--G----CGAGTGTATAGGGGCAATGTTAGCAATTG--GCAAAA-GACCAAATGTCTA-GA--A
gi|4 : TAAGCCGCCTCA-CTATCGCGTTGTCTTATAGGTAGGGACTATAGTGCATTTGGTCACTTTGAGGG-CTGAATAAGTCCTGAAG--------TAC-AGGTTGCGCTGGTCGGCTAGCCAT-CGTAAA-T-CTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTT-GGG-TGATGGCAGT--AACCCG-------GAC---CA--GTAG--C-TATACCCAAGGG------ACATTGGCA-AGacgagtgtctag
gi|5 : taaattctactggcataaaataaataaacaatagtgagaaaactgaa------CAAGTGT-CAAGGGGACCA-AGGGAC----ATTGGC-GGGGGGG--GGGACCAAATGTCCAAGGG--------AC-ATTG--GCATCG-GACCAAATGTCCA-TG--ACA-TGGCAAAGAGACC-AGTGTCCAG
gi|5 : TGTCAAGGGGACCAAG----------GGACA-TTGG-CGGGGG-GGGGGACCAAATGT-C--------CA-AGGGAC----ATTGGC-ATCG-G------ACCAAATGTCCA--TG--------AC-AT-G--GCAAAGAGACCAG-TGTCCA-GGCTATAGTGACGAAAATACC-ATTGGCCAgctatagtgacgaaaataccattggccaaagacacgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|7 : caagGAC----ATTGGC-GGGGGGG--GGGACCAAGTGTCCAAGGG--------AC-ATTG--GCATCG-GACCAAATGTCCATGG--ACATTGGCAAAGAGACCAAGTGTCCAGaagacacgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|8 : AAGCTGCCTCA-CTATAACGTTTTCTTATAGGTAGGGACTAGAGTGCGTTTGGTTACTTTGAAGG-CTGAATAAGTCTTGAAGTAGAGATCTAT-AGATTGTGCTGGCTGGCTAGCTAT-TGT-AA---CTGACGCTTGGTAATAAGGGCTAAATAAGAC--TACACCGTTGTCAAAGTGAGATTGT---AA-ACTAACTGGTTAGAGACgtatagtgacgaaaataccaattggccaagacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|9 : GGACCAAGTGTA-C-----GACGTTTGGTCAAGGGAA------CAAGTGTATA---GGACCAGAGGTACCGCTATTGAC-AAAG-TGTCAGG-CTAAGTGC---AGGG--------TC-ATT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAGTGGTACAAGTTTTCATATGTCAATAGACTTCCGGGGGTTATTTGATTTATAGAATCATCGTAAATATATTGATTTAGTAAATAGATCTAGCCTAGAGCACATAAATTTTGGTCATTGATTCCAACTGTAAAGTAACAGTTTCTTTTCAATCATTTGTCAGAATATAAAATCCAGAAATCCTGAGTGTAATCAGGTACATGCCCACAGAAAATATACCGCTTGGCTGGGGTGCACGT
Unaligned ( gi|11 ): TCCAATCGTAGTAAATATATTGATTGTGCAGTTTGATATTACTTTTTTTAGAAAGACATTTTTAACTTGTTGATATCCAAAATCCTAGGTGTGTCCGGTAACGTGCCCACAGTAATAGACCGCT
Unaligned ( gi|12 ): ATAGGTAACAGGCTATTATATTTTTTAGAAAGACATTTAACTTGTTAATATCCAAAATCCCGGGTGTATCCGGTAACGTGCCGACAGTAATATACCGCTCGGCTGGACACACGTT
Unaligned ( gi|13 ): CTAGGTAACAGCTATTATTTTTTTAGAGACATTCAATTGATTAATTTCAAAATATCGGGTGTAATTGGTAACGTGCCCATAGTAATAGACCGCTCGGCTGGAACA
Unaligned ( gi|16 ): CGTTTTAATCATTTGTTAGAATATAAAATCAAGAGTCGGGTACGTGCCCGCAGGAAATACACCCAGGGTGGGG
Unaligned ( gi|17 ): AAATCCAGAGATCCTGAGTGAAATCAGGTACGTGCCCGCAGGAAATATACCGATCGGCTGGGGTGCAC
Unaligned ( gi|18 ): AGAGTTTAAGTAGAAGAGACACAGGGTAGGTCAAATGGCATAGGTGCACAAGTGATTAGGACCAAGT
Unaligned ( gi|19 ): AGATCCTGAGTGTATTCAGGTACGTGCCTGCAGAAAATATACCGCTCGTCTGGGGTGCACGTT
Unaligned ( gi|20 ): AGGTAACAGGCTATTATTTTTTTTAGAGACATTCAATTTGTTAATATCCAAAAT
Unaligned ( gi|21 ): GGTTAAGGGACACGGGGGTAGGTCAATATATATAGGTGTACAAGTG
Alignments
lowQualScore : 1 111 3333333333333 1 333 111 111 111111111 111 444444444444444 111111 11111111 1111 11 44444444 11 1 11 111 11 44444444444 2
lowQualScore : 0 0 1 1 3 0 222 0 1 6666666666666 1 0 333 3 0 9 0 3 0 1 111 6 2 8 8 6 0 666 6 66 9 888888888 000 555 2 111111111111111 7 5 8888 6 999999 6 22222222 4444 6 55 99999999 0 11 6 0 8 11 0 444 99 66666666666 2 0
lowQualScore : . . . . . . ... . . ............. . . ... . . . . . . . ... . . . . . . ... . .. . ......... ... ... . ............... . . .... . ...... . ........ .... . .. ........ . .. . . . .. . ... .. ........... . .
lowQualScore : 0 2 0 0 2 8 000 8 4 2222222222222 4 0 222 2 2 2 2 2 8 0 777 7 5 0 0 0 8 444 7 77 3 333333333 000 999 5 777777777777777 3 2 5555 3 222222 7 00000000 2222 0 88 00000000 8 22 0 8 0 00 8 000 22 00000000000 5 0
consensus : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGGCTGAATAAGTCCTGAAG--------TA-TAGGTTGCGCCGGTTGGCTAGCCAT-CGTAAAT-CTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTT-GGG-TGATGGCAGTAACCCGGACCA-GTAGCTATACCCAA-GG------ACAT---TGGC-A-AGGGACCAAGTGTC---------------CAAGGGACATT-GG-CAAGGGNACCAAGTGT------C-C-AG-GG--AC----ATTGGCAAGGGA--CAAGTGTCAAGGGGACCAAGGGACATTGGC-GGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-NGACA-----------TGGCAAAGAGACCAAGTGTCCAG
Reference ( family-10704 ) : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGGCTGAATAAGTCCTGAAG--------TA-TAGGTTGCGCCGGTTGGCTAGCCAT-CGTAA-T-CTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTT-GGG-TGATGGCAGTAACCCGGACCA-GTAGCTATACCCAA-GG------ACAT---TGGC-A-AGGGACCAAATGTC---------------CAAGGGACATT-GG-CAAGGGGACCAAGTGT------C-C-AG-GG--AC----ATTGGCAAGGGA--CAAGTGTCA---GGACCAAGGGACATTGGC-GGGG-GGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-GGACA-----------TGGCAAAGAGACC-AGTGTCCAG
gi|1 : ACCGCTGTCAGAGTGAGCTGGT---AA-ACTAGTTGGCTAGAGACCTT-GGG-TGAAGGCAGTAACCCGGACCA-GTAGCTATA-CCAA-G--------------TGTC-C-AGGG-------GAC---------------CAAGGGACATT-GG-CAAGGGGACCAAGTGT------C-CAAG-GG--AC----ATTGGCAAGGGAACCAAGTGT--------CCAAGGGACATTGGT----A-AGGGGACCAAGT-TTCAAGGG-ATAGTGGTGTATAAGAC---CAATTGGCCA-AGACA-----------
gi|10 : TAATCCGTCTCA-CTATTGTGATTTCTTATTGGCAAAGACCAGGGTACATTTTGTTCCTTCG-GGGTTTATAAAGTCTTGAAG--------CA-TTTGTTGTGCCGGTTGGTTcaattatatttagttagaatagagagaggaacgatagggaccgtagggttaaatggtaatttgtgattatttgtcttgattccttttccaatcgtagtaaatatattgattgtgcacattgatagtttgctaggtaacatgctattattgtttttagaaagacgtttaatatccaaaatcccgggtacattcggtaacgtgcccacagtaatagaccgctcggctggatacacgtt
gi|14 : tagactccagtagcaaactaagataatgaacaacctgaa------ACAT---TGTC-ATGGGGACCAAATGCCAAAGGTAACAAGCATCAAGGAACTTT-GG-AAAGGATACCAAGTGT------C-C-GG-GA--AG----ATTGACAAGGGA--Cga
gi|15 : aacaaCGATGACAAAGTGAACTGGA---AACACCCACGGACAAGAGACCTC---T-TGGTCGC-GTA----GGACCAGGTGACCAAACCCAA-AGGCTAGTACAC---TGGT-A-Acgagt
gi|2 : ccTAAGCCGCCTCAACTATCGCGTTGTCTTATAGGTAGGGACTATGG-GCATT-GGTCACTT-GAGGGCTGAATAAGTCCTGAAG--------TAAGAGGTTACGCCTGTTGGCTAGCCATACGTAAAT-CTGACACTTGGTAATAAGGGCTGAATA-GCCTGTAC-TCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTTGGGG-TGATGGCAGTAA-CCGGACCA-GTAGCTATACCCAA-GG------ACAT---TGGC-A-AGGGACCAAGTGTT---------------CAAGGGACATT-GT-CAAGGGAGCCAAGT-T------CGC-AGCGG--AC----ATTGGCAAGGGA--CAAGTGTCAAGGGGACCAAGGGACATTGGCGGGGG-GGGGGACCAAATGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-TGACA-----------TGGCAAAGAGACC-AGTGTCCAG
gi|3 : TTGGTCACGTAG-GGACTGGATAAG----------------------GTTGGGCTAGTTGGCTGTTCAT-CTTAA-TTCTGGCATTTGGTCATA------------GTCTGTACATCGGTATCAAAGAAAGCTAGGGAAAA-ACCAAATGCTCATGGATTTT-GGGGCGA----AGT----CGAACCA-GT---TGTA----A-TG------ACATACATTGT-A-A---ACCACATGTC---------------TACGG-ACAT--------GGGAACCAAATGT------C-C-TG-AA--AC----ATTGGCATGTAAC-CAAGTGT---------CGAGAGATA-TAGC-AGGG-G-----CAAAGTGTCT--GGATACACTG--GCA---AACAAGCGAGTGTATAGGGGCAATGTTAGCAATTGGCAAA-AGACCAAATGTCTAG
gi|4 : TAAGCCGCCTCA-CTATCGCGTTGTCTTATAGGTAGGGACTATAGTGCATTTGGTCACTTTGAGGGCTGAATAAGTCCTGAAG--------TA-CAGGTTGCGCTGGTCGGCTAGCCAT-CGTAAAT-CTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTT-GGG-TGATGGCAGTAACCCGGACCA-GTAGCTATACCCAAGGG------ACAT---TGGC-A-AGaaacgagtgtctag
gi|5 : taaattctactggcataaaataaataaacaatagtgagaaaactgaa--CAAGTGTCAAGGGGACCAAGGGACATTGGC-GGGGGGGGGGACCAAATGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-TGACA-----------TGGCAAAGAGACC-AGTGTCCAG
gi|7 : GACATTGGC-GGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCATGGACAT----------TGGCAAAGAGACCAAGTGTCCAGgctatagtgacgaaaataccattggccaaagacacgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|7 : CGGACCA-A-----ATGTCCAT-GG------ACAT---TGGCAA-AGAGACCAAGTGTC---------------C-AGGTATAGT-GA-CGAAAATACCAATTGG------C-C-A--AG--AC----Agtatagtgacgaaaataccaattggccaagacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|8 : gacattggcggggggggggaccaagtgtccaagggacattggcatAAGCTGCCTCA-CTATAACGTTTTCTTATAGGTAGGGACTAGAGTGCGTTTGGTTACTTTGAAGGCTGAATAAGTCTTGAAGTAGAGATCTA-TAGATTGTGCTGGCTGGCTAGCTAT-TGTAA---CTGACGCTTGGTAATAAGGGCTAAATAAGAC--TACACCGTTGTCAAAGTGAGATTGT---AA-ACTAACTGGTTAGAGACcgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|9 : GGACCAAGTGTA---------------C----GACGTTTGGTCAAGGGAAC-AAGTGTATAGGAC-C-AG-AGGTACCGCTATTGACA--------AAGTGTCA---GG-CTAAG
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAGTGGTACAAGTTTTCATATGTCAATAGACTTCCGGGGGTTATTTGATTTATAGAATCATCGTAAATATATTGATTTAGTAAATAGATCTAGCCTAGAGCACATAAATTTTGGTCATTGATTCCAACTGTAAAGTAACAGTTTCTTTTCAATCATTTGTCAGAATATAAAATCCAGAAATCCTGAGTGTAATCAGGTACATGCCCACAGAAAATATACCGCTTGGCTGGGGTGCACGT
Unaligned ( gi|11 ): TCCAATCGTAGTAAATATATTGATTGTGCAGTTTGATATTACTTTTTTTAGAAAGACATTTTTAACTTGTTGATATCCAAAATCCTAGGTGTGTCCGGTAACGTGCCCACAGTAATAGACCGCT
Unaligned ( gi|12 ): ATAGGTAACAGGCTATTATATTTTTTAGAAAGACATTTAACTTGTTAATATCCAAAATCCCGGGTGTATCCGGTAACGTGCCGACAGTAATATACCGCTCGGCTGGACACACGTT
Unaligned ( gi|13 ): CTAGGTAACAGCTATTATTTTTTTAGAGACATTCAATTGATTAATTTCAAAATATCGGGTGTAATTGGTAACGTGCCCATAGTAATAGACCGCTCGGCTGGAACA
Unaligned ( gi|16 ): CGTTTTAATCATTTGTTAGAATATAAAATCAAGAGTCGGGTACGTGCCCGCAGGAAATACACCCAGGGTGGGG
Unaligned ( gi|17 ): AAATCCAGAGATCCTGAGTGAAATCAGGTACGTGCCCGCAGGAAATATACCGATCGGCTGGGGTGCAC
Unaligned ( gi|18 ): AGAGTTTAAGTAGAAGAGACACAGGGTAGGTCAAATGGCATAGGTGCACAAGTGATTAGGACCAAGT
Unaligned ( gi|19 ): AGATCCTGAGTGTATTCAGGTACGTGCCTGCAGAAAATATACCGCTCGTCTGGGGTGCACGTT
Unaligned ( gi|20 ): AGGTAACAGGCTATTATTTTTTTTAGAGACATTCAATTTGTTAATATCCAAAAT
Unaligned ( gi|21 ): GGTTAAGGGACACGGGGGTAGGTCAATATATATAGGTGTACAAGTG
Alignments
lowQualScore : 1 111 3333333333333 1 111 1 111111 222222222 444444444444444 1111 11111111 1111 11 111 11 44444444444 1
lowQualScore : 0 0 1 1 3 0 222 0 1 6666666666666 1 0 9 3 0 9 0 3 0 1 111 6 2 6 6 0 88888 333333 8 111111111 888 5 3 6 99 111111111111111 5 5 1 1 5 1111 5 6 9999 5 33333333 6 4444 3 1 1 3 6 11 0 444 77 66666666666 2 5
lowQualScore : . . . . . . ... . . ............. . . . . . . . . . . ... . . . . . ..... ...... . ......... ... . . . .. ............... . . . . . .... . . .... . ........ . .... . . . . . .. . ... .. ........... . .
lowQualScore : 0 2 0 0 2 8 000 8 4 2222222222222 4 0 8 2 2 2 2 2 8 0 777 7 5 0 0 8 99999 999999 9 777777777 888 0 0 7 33 777777777777777 7 2 0 0 7 1111 7 7 5555 7 22222222 7 2222 7 0 0 2 7 00 8 000 00 00000000000 5 5
consensus : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGGCTGAATAAGTCCTGAAG--------TA-TAGGTTGCGCCGGTTGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTTGGGGTGATGGCAGTAACCCGGACCA-GTAGCTATACCCAA-GG------ACAT---TGGCA-AGG-GACCAAATGTC---------------CAAGGGACATTGGCAAGGGGACCAAGTGTC-C-AG-GGACA-TTGG-CAAGGG-A--C-AAGTGTCAAGGGGACCA-AGGGAC----ATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-NGACA-----------TGGCAAAGAGACCAAGTGTCCAG
Reference ( family-10704 ) : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGGCTGAATAAGTCCTGAAG--------TA-TAGGTTGCGCCGGTTGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTTGGG-TGATGGCAGTAACCCGGACCA-GTAGCTATACCCAA-GG------ACAT---TGGCA-AGG-GACCAAGTGTC---------------CAAGGGACATTGGCAAGGGNACCAAGTGTC-C-AG-GGACA-TTGG-CAAGGG-A--C-AAGTGTCAAGGGGACCA-AGGGAC----ATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-NGACA-----------TGGCAAAGAGACCAAGTGTCCAG
gi|1 : ACCGCTGTCAGAGTGAGCTGGT---AA-ACTAGTTGGCTAGAGACCTTGGG-TGAAGGCAGTAACCCGGACCA-GTAGCTATA-CCAA-G--------------TGTCC-AGG-G-------GAC---------------CAAGGGACATTGGCAAGGGGACCAAGTGTC-CAAG-GGACA-TTGG-CAAGGG-AACC-AAGTGT--------CCA-AGGGAC----ATTGGT----AAGGGGACCAAGT-TTCAAGGG-ATAGTGGTGTATAAGAC---CAATTGGCCA-AGACA-----------
gi|10 : TAATCCGTCTCA-CTATTGTGATTTCTTATTGGCAAAGACCAGGGTACATTTTGTTCCTTCG-GGGTTTATAAAGTCTTGAAG--------CA-TTTGTTGTGCCGGTTGGTTcaattatatttagttagaatagagagaggaacgatagggaccgtagggttaaatggtaatttgtgattatttgtcttgattccttttccaatcgtagtaaatatattgattgtgcacattgatagtttgctaggtaacatgctattattgtttttagaaagacgtttaatatccaaaatcccgggtacattcggtaacgtgcccacagtaatagaccgctcggctggatacacgtt
gi|14 : tagactccagtagcaaactaagataatgaacaacctgaa------ACAT---TGTCATGGG-GACCAAATGCCAAAGGTAACAAGCATCAAGGAACTTTGGAAAGGATACCAAGTGTC-C-GG-GAAGA-TTGA-CAAGGG-A--C-ga
gi|15 : aacaaCGATGACAAAGTGAACTGGA---AACACCCACGGACAAGAGACCTC--T-TGGTCGC-GTA----GGACCAGGTGACCAAACCCAA-AGGCTAGTACAC---TGGTA-Acgagt
gi|2 : ccTAAGCCGCCTCAACTATCGCGTTGTCTTATAGGTAGGGACTATGG-GCATT-GGTCACTT-GAGGGCTGAATAAGTCCTGAAG--------TAAGAGGTTACGCCTGTTGGCTAGCCATACGTAAATCTGACACTTGGTAATAAGGGCTGAATA-GCCTGTAC-TCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTTGGGGTGATGGCAGTAACC-GGACCA-GTAGCTATACCCAA-GG------ACAT---TGGCA-AGG-GACCAAGTGTT---------------CAAGGGACATTGTCAAGGGAGCCAAGT-TCGC-AGCGGACA-TTGG-CAAGGG-A--C-AAGTGTCAAGGGGACCA-AGGGAC----ATTGGCGGGGGGGGGGACCAAATGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-TGACA-----------TGGCAAAGAGACC-AGTGTCCAG
gi|3 : TTGGTCACGTAG-GGACTGGATAAG----------------------GTTGGGCTAGTTGGCTGTTCAT-CTTAATTCTGGCATTTGGTCATA------------GTCTGTACATCGGTATCAAAGAAAGCTAGGGAAAA-ACCAAATGCTCATGGATTTTGGGGCGA----AGT----CGAACCA-GT---TGTA----A-TG------ACATACATTGTA-A----ACCACATGTC---------------TACGG-ACAT------GGGAACCAAATGTC-C-TG-AAACA-TTGG-CATGTA-A--CCAAGTGTCGAGAG----------AT----AT-AGCAGGGG------CAAAGTGTCT--GGATACACTG--GCA---AACAAGCGAGTGTATAGGGGCAATGTTAGCAATTGGCAAA-AGACCAAATGTCTAG
gi|4 : TAAGCCGCCTCA-CTATCGCGTTGTCTTATAGGTAGGGACTATAGTGCATTTGGTCACTTTGAGGGCTGAATAAGTCCTGAAG--------TA-CAGGTTGCGCTGGTCGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTTAGAGACCTTGGG-TGATGGCAGTAACCCGGACCA-GTAGCTATACCCAAGGG------ACAT---TGGCA-AGaaacgagtgtctag
gi|5 : taaattctactggcataaaataaataaacaatagtgagaaaactgaa--C-AAGTGTCAAGGGGACCA-AGGGAC----ATTGGCGGGGGGGGGGACCAAATGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-TGACA-----------TGGCAAAGAGACC-AGTGTCCAG
gi|5 : CGGACCA-A-----ATGTCCA--TG------ACAT----GGCA-AAGAGACCA-GTGTC---------------CAGGCTATAGTGACGAAAATACC-ATTGGC-C-AA-AGACA-gctatagtgacgaaaataccattggccaaagacacgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|7 : caagtgtcaaggggaccaagggacattggcggggggggggaccaaatgtccaagggacattggcatGAC----ATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCATGGACAT----------TGGCAAAGAGACCAAGTGTCCAGcgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|7 : GGACCA---AG---TGTCCAA-GGG-----ACAT---TGGCA-TCG-GACCAAATGTC---------------CA-TGGACATTGGCAAAGAGACCAAGTGTC-C-AG-GTATA-GTGA-CGA---------AAATACCAATTGG-CCA-AGgtatagtgacgaaaataccaattggccaagacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|8 : gacattggcggggggggAAGCTGCCTCA-CTATAACGTTTTCTTATAGGTAGGGACTAGAGTGCGTTTGGTTACTTTGAAGGCTGAATAAGTCTTGAAGTAGAGATCTA-TAGATTGTGCTGGCTGGCTAGCTAT-TGTAA--CTGACGCTTGGTAATAAGGGCTAAATAAGAC--TACACCGTTGTCAAAGTGAGATTGT---AA-ACTAACTGGTTAGAGACacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|9 : GGACCAAGTGTA-C-----GACGTTTGGTCAAGGGAA--C-AAGTGT--ATAGGACCAGAGGTACCGCTATTGACAAAGTGTCAGGCTAAGTGC---AGGG-TCATT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAGTGGTACAAGTTTTCATATGTCAATAGACTTCCGGGGGTTATTTGATTTATAGAATCATCGTAAATATATTGATTTAGTAAATAGATCTAGCCTAGAGCACATAAATTTTGGTCATTGATTCCAACTGTAAAGTAACAGTTTCTTTTCAATCATTTGTCAGAATATAAAATCCAGAAATCCTGAGTGTAATCAGGTACATGCCCACAGAAAATATACCGCTTGGCTGGGGTGCACGT
Unaligned ( gi|11 ): TCCAATCGTAGTAAATATATTGATTGTGCAGTTTGATATTACTTTTTTTAGAAAGACATTTTTAACTTGTTGATATCCAAAATCCTAGGTGTGTCCGGTAACGTGCCCACAGTAATAGACCGCT
Unaligned ( gi|12 ): ATAGGTAACAGGCTATTATATTTTTTAGAAAGACATTTAACTTGTTAATATCCAAAATCCCGGGTGTATCCGGTAACGTGCCGACAGTAATATACCGCTCGGCTGGACACACGTT
Unaligned ( gi|13 ): CTAGGTAACAGCTATTATTTTTTTAGAGACATTCAATTGATTAATTTCAAAATATCGGGTGTAATTGGTAACGTGCCCATAGTAATAGACCGCTCGGCTGGAACA
Unaligned ( gi|16 ): CGTTTTAATCATTTGTTAGAATATAAAATCAAGAGTCGGGTACGTGCCCGCAGGAAATACACCCAGGGTGGGG
Unaligned ( gi|17 ): AAATCCAGAGATCCTGAGTGAAATCAGGTACGTGCCCGCAGGAAATATACCGATCGGCTGGGGTGCAC
Unaligned ( gi|18 ): AGAGTTTAAGTAGAAGAGACACAGGGTAGGTCAAATGGCATAGGTGCACAAGTGATTAGGACCAAGT
Unaligned ( gi|19 ): AGATCCTGAGTGTATTCAGGTACGTGCCTGCAGAAAATATACCGCTCGTCTGGGGTGCACGTT
Unaligned ( gi|20 ): AGGTAACAGGCTATTATTTTTTTTAGAGACATTCAATTTGTTAATATCCAAAAT
Unaligned ( gi|21 ): GGTTAAGGGACACGGGGGTAGGTCAATATATATAGGTGTACAAGTG
Alignments
lowQualScore : 1 111 3333333333333 1 111 1 11 11111 111111 222222222 5555555555555555555555 1111 1111 1111 11 11 111 11 44444444444 1
lowQualScore : 0 0 1 1 3 0 222 0 1 6666666666666 1 0 9 3 0 9 0 3 0 1 111 6 2 5 5 44 33333 111111 77 111111111 888 5 5 5 0 3333333333333333333333 99 5 4444 1 4444 6 6 6 0000 3 55 0 3 3 0 8 11 0 444 77 66666666666 2 5
lowQualScore : . . . . . . ... . . ............. . . . . . . . . . . ... . . . . .. ..... ...... .. ......... ... . . . . ...................... .. . .... . .... . . . .... . .. . . . . . .. . ... .. ........... . .
lowQualScore : 0 2 0 0 2 8 000 8 4 2222222222222 4 0 8 2 2 2 2 2 8 0 777 7 5 7 0 22 33333 777777 33 777777777 888 0 0 0 7 5555555555555555555555 88 2 2222 0 2222 7 7 7 0000 2 44 8 2 2 8 0 00 8 000 00 00000000000 5 5
consensus : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGGCTGAATAAGTCCTGAAG--------TA-TAGGTTGCGCCGGTTGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTTGGGGTGATGGCAGTAACCCGGACCA-GTAGCTATACCCAA-GG------ACAT---T-GG-CA-AGGGACCAAATGT------C---------------CA-AGGGAC----ATTGGCAAGG----GGACCAAGTGTC-C-AG-GGACATTGGCAAGGGA--C-AAGTGTCAAGGGGACCAAGGGACATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-NGACA-----------TGGCAAAGAGACCAAGTGTCCAG
Reference ( family-10704 ) : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGGCTGAATAAGTCCTGAAG--------TA-TAGGTTGCGCCGGTTGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTTGGGGTGATGGCAGTAACCCGGACCA-GTAGCTATACCCAA-GG------ACAT---T-GG-CA-AGGGACCAAATGT------C---------------CA-AGGGAC----ATTGGCAAGG----GGACCAAGTGTC-C-AG-GGACATTGGCAAGGGA--C-AAGTGTCAAGGGGACCAAGGGACATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-NGACA-----------TGGCAAAGAGACCAAGTGTCCAG
gi|1 : ACCGCTGTCAGAGTGAGCTGGT---AA-ACTAGTTGGCT-AGAGACCTT-GGGTGAAGGCAGTAACCCGGACCA-GTAGCTATA-CCAA-G--------------T-GT-CC-AGGG-------GA------C---------------CA-AGGGAC----ATTGGCAAGG----GGACCAAGTGTC-CAAG-GGACATTGGCAAGGGAACC-AAGTGT--------CCAAGGGACATTGGT----AAGGGGACCAAGT-TTCAAGGG-ATAGTGGTGTATAAGAC---CAATTGGCCA-AGACA-----------
gi|10 : TAATCCGTCTCA-CTATTGTGATTTCTTATTGGCAAAGACCAGGGTACATTTTGTTCCTTCG-GGGTTTATAAAGTCTTGAAG--------CA-TTTGTTGTGCCGGTTGGTTcaattatatttagttagaatagagagaggaacgatagggaccgtagggttaaatggtaatttgtgattatttgtcttgattccttttccaatcgtagtaaatatattgattgtgcacattgatagtttgctaggtaacatgctattattgtttttagaaagacgtttaatatccaaaatcccgggtacattcggtaacgtgcccacagtaatagaccgctcggctggatacacgtt
gi|14 : tagactccagtagcaaactaagataatgaacaacctgaa------ACAT---T-GT-CATGGGGACCAAATGC------CAAAGGTAACAAGCATCA-AGGAAC----TTTGGAAAGG----ATACCAAGTGTC-C-GG-GAAGATTGACAAGGGA--C-ga
gi|15 : aacaaCGATGACAAAGTGAACTGGA---AACACCCACGGACA-AGAGACCTC---TTGGTCGC-GTA----GGACCAGGTGACCAAACCCAA-AGGCTAGTACAC---T-GG-TA-Acgagt
gi|2 : ccTAAGCCGCCTCAACTATCGCGTTGTCTTATAGGTAGGGACTATGG-GCATT-GGTCACTT-GAGGGCTGAATAAGTCCTGAAG--------TAAGAGGTTACGCCTGTTGGCTAGCCATACGTAAATCTGACACTTGGTAATAAGGGCTGAATA-GCCTGTAC-TCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTTGGGGTGATGGCAGTAACC-GGACCA-GTAGCTATACCCAA-GG------ACAT---T-GG-CA-AGGGACCAAGTGT------T---------------CA-AGGGAC----ATTGTCAAGG----GAGCCAAGT-TCGC-AGCGGACATTGGCAAGGGA--C-AAGTGTCAAGGGGACCAAGGGACATTGGCGGGGGGGGGGACCAAATGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-TGACA-----------TGGCAAAGAGACC-AGTGTCCAG
gi|3 : TTGGTCACGTAG-GGACTGGATAAG----------------------GTTGGGCTAGTTGGCTGTTCAT-CTTAATTCTGGCATTTGGTCATA------------GTCTGTACATCGGTATCAAAGAAAGCTAGGGAAAA-ACCAAATGCTC-ATGGATTTTGGGGCGA----AGT----CGAACCA-GT---TGTA----A-TG------ACATACAT-TG-TA-A---ACCACATGT------C---------------TA-CGG-AC----AT------GG----GAACCAAATGTC-C-TG-AAACATTGGCATGTAA--CCAAGTGTCGAGAG---------ATAT-AGCAGGGG------CAAAGTGTCT--GGATACACTG--GCA---AACAAGCGAGTGTATAGGGGCAATGTTAGCAATTGGCAAA-AGACCAAATGTCTAG
gi|4 : TAAGCCGCCTCA-CTATCGCGTTGTCTTATAGGTAGGGACTATAGTGCATTTGGTCACTTTGAGGGCTGAATAAGTCCTGAAG--------TA-CAGGTTGCGCTGGTCGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTT-GGGTGATGGCAGTAACCCGGACCA-GTAGCTATACCCAAGGG------ACAT---T-GG-CA-AGaaacgagtgtctag
gi|5 : taaattctactggcataaaataaataaacaatagtgagaaaactgaa--C-AAGTGTCAAGGGGACCAAGGGACATTGGCGGGGGGGGGGACCAAATGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-TGACA-----------TGGCAAAGAGACC-AGTGTCCAG
gi|7 : GACATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCATGGACAT----------TGGCAAAGAGACCAAGTGTCCAGgctatagtgacgaaaataccattggccaaagacacgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|7 : GGACCA---AG---TGTCCAA-GGG-----ACAT---T-GG-CA-TCGGACCAAATGT------C---------------CA--TGGAC----ATTGGCAAAG----AGACCAAGTGTC-C-AG-GTATAGTGACGA--------AAATACCAATTGG-CCAAGgtatagtgacgaaaataccaattggccaagacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|8 : gacattggcggggggggAAGCTGCCTCA-CTATAACGTTTTCTTATAGGTAGGGACTAGAGTGCGTTTGGTTACTTTGAAGGCTGAATAAGTCTTGAAGTAGAGATCTA-TAGATTGTGCTGGCTGGCTAGCTAT-TGTAA--CTGACGCTTGGTAATAAGGGCTAAATAAGAC--TACACCGTTGTCAAAGTGAGATTGT---AA-ACTAACTGGTT-AGAGACacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|9 : GGTTGATAGACATAGGTGTAA----AGTGGTCAGGACCA---AG-TGTAC------G------ACGT---TTGGTCA-AGGGAACAAGTGTATAGGAC---------------CAGAGGTACCGCTATTGACAAAGTGTCAGGCTAAGTG---C-AG-GGTCATT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAGTGGTACAAGTTTTCATATGTCAATAGACTTCCGGGGGTTATTTGATTTATAGAATCATCGTAAATATATTGATTTAGTAAATAGATCTAGCCTAGAGCACATAAATTTTGGTCATTGATTCCAACTGTAAAGTAACAGTTTCTTTTCAATCATTTGTCAGAATATAAAATCCAGAAATCCTGAGTGTAATCAGGTACATGCCCACAGAAAATATACCGCTTGGCTGGGGTGCACGT
Unaligned ( gi|11 ): TCCAATCGTAGTAAATATATTGATTGTGCAGTTTGATATTACTTTTTTTAGAAAGACATTTTTAACTTGTTGATATCCAAAATCCTAGGTGTGTCCGGTAACGTGCCCACAGTAATAGACCGCT
Unaligned ( gi|12 ): ATAGGTAACAGGCTATTATATTTTTTAGAAAGACATTTAACTTGTTAATATCCAAAATCCCGGGTGTATCCGGTAACGTGCCGACAGTAATATACCGCTCGGCTGGACACACGTT
Unaligned ( gi|13 ): CTAGGTAACAGCTATTATTTTTTTAGAGACATTCAATTGATTAATTTCAAAATATCGGGTGTAATTGGTAACGTGCCCATAGTAATAGACCGCTCGGCTGGAACA
Unaligned ( gi|16 ): CGTTTTAATCATTTGTTAGAATATAAAATCAAGAGTCGGGTACGTGCCCGCAGGAAATACACCCAGGGTGGGG
Unaligned ( gi|17 ): AAATCCAGAGATCCTGAGTGAAATCAGGTACGTGCCCGCAGGAAATATACCGATCGGCTGGGGTGCAC
Unaligned ( gi|18 ): AGAGTTTAAGTAGAAGAGACACAGGGTAGGTCAAATGGCATAGGTGCACAAGTGATTAGGACCAAGT
Unaligned ( gi|19 ): AGATCCTGAGTGTATTCAGGTACGTGCCTGCAGAAAATATACCGCTCGTCTGGGGTGCACGTT
Unaligned ( gi|20 ): AGGTAACAGGCTATTATTTTTTTTAGAGACATTCAATTTGTTAATATCCAAAAT
Unaligned ( gi|21 ): GGTTAAGGGACACGGGGGTAGGTCAATATATATAGGTGTACAAGTG
Alignments
lowQualScore : 1 111 3333333333333 1 111 1 11 11111 111111 222222222 5555555555555555555555 1111 1111 1111 11 11 111 11 44444444444 1
lowQualScore : 0 0 1 1 3 0 222 0 1 6666666666666 1 0 9 3 0 9 0 3 0 1 111 6 2 5 5 44 33333 111111 77 111111111 888 5 5 5 0 3333333333333333333333 99 5 4444 1 4444 6 6 6 0000 3 55 0 3 3 0 8 11 0 444 77 66666666666 2 5
lowQualScore : . . . . . . ... . . ............. . . . . . . . . . . ... . . . . .. ..... ...... .. ......... ... . . . . ...................... .. . .... . .... . . . .... . .. . . . . . .. . ... .. ........... . .
lowQualScore : 0 2 0 0 2 8 000 8 4 2222222222222 4 0 8 2 2 2 2 2 8 0 777 7 5 7 0 22 33333 777777 33 777777777 888 0 0 0 7 5555555555555555555555 88 2 2222 0 2222 7 7 7 0000 2 44 8 2 2 8 0 00 8 000 00 00000000000 5 5
consensus : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGGCTGAATAAGTCCTGAAG--------TA-TAGGTTGCGCCGGTTGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTTGGGGTGATGGCAGTAACCCGGACCA-GTAGCTATACCCAA-GG------ACAT---T-GG-CA-AGGGACCAAATGT------C---------------CA-AGGGAC----ATTGGCAAGG----GGACCAAGTGTC-C-AG-GGACATTGGCAAGGGA--C-AAGTGTCAAGGGGACCAAGGGACATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-NGACA-----------TGGCAAAGAGACCAAGTGTCCAG
Reference ( family-10704 ) : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGGCTGAATAAGTCCTGAAG--------TA-TAGGTTGCGCCGGTTGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTTGGGGTGATGGCAGTAACCCGGACCA-GTAGCTATACCCAA-GG------ACAT---T-GG-CA-AGGGACCAAATGT------C---------------CA-AGGGAC----ATTGGCAAGG----GGACCAAGTGTC-C-AG-GGACATTGGCAAGGGA--C-AAGTGTCAAGGGGACCAAGGGACATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-NGACA-----------TGGCAAAGAGACCAAGTGTCCAG
gi|1 : ACCGCTGTCAGAGTGAGCTGGT---AA-ACTAGTTGGCT-AGAGACCTT-GGGTGAAGGCAGTAACCCGGACCA-GTAGCTATA-CCAA-G--------------T-GT-CC-AGGG-------GA------C---------------CA-AGGGAC----ATTGGCAAGG----GGACCAAGTGTC-CAAG-GGACATTGGCAAGGGAACC-AAGTGT--------CCAAGGGACATTGGT----AAGGGGACCAAGT-TTCAAGGG-ATAGTGGTGTATAAGAC---CAATTGGCCA-AGACA-----------
gi|10 : TAATCCGTCTCA-CTATTGTGATTTCTTATTGGCAAAGACCAGGGTACATTTTGTTCCTTCG-GGGTTTATAAAGTCTTGAAG--------CA-TTTGTTGTGCCGGTTGGTTcaattatatttagttagaatagagagaggaacgatagggaccgtagggttaaatggtaatttgtgattatttgtcttgattccttttccaatcgtagtaaatatattgattgtgcacattgatagtttgctaggtaacatgctattattgtttttagaaagacgtttaatatccaaaatcccgggtacattcggtaacgtgcccacagtaatagaccgctcggctggatacacgtt
gi|14 : tagactccagtagcaaactaagataatgaacaacctgaa------ACAT---T-GT-CATGGGGACCAAATGC------CAAAGGTAACAAGCATCA-AGGAAC----TTTGGAAAGG----ATACCAAGTGTC-C-GG-GAAGATTGACAAGGGA--C-ga
gi|15 : aacaaCGATGACAAAGTGAACTGGA---AACACCCACGGACA-AGAGACCTC---TTGGTCGC-GTA----GGACCAGGTGACCAAACCCAA-AGGCTAGTACAC---T-GG-TA-Acgagt
gi|2 : ccTAAGCCGCCTCAACTATCGCGTTGTCTTATAGGTAGGGACTATGG-GCATT-GGTCACTT-GAGGGCTGAATAAGTCCTGAAG--------TAAGAGGTTACGCCTGTTGGCTAGCCATACGTAAATCTGACACTTGGTAATAAGGGCTGAATA-GCCTGTAC-TCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTTGGGGTGATGGCAGTAACC-GGACCA-GTAGCTATACCCAA-GG------ACAT---T-GG-CA-AGGGACCAAGTGT------T---------------CA-AGGGAC----ATTGTCAAGG----GAGCCAAGT-TCGC-AGCGGACATTGGCAAGGGA--C-AAGTGTCAAGGGGACCAAGGGACATTGGCGGGGGGGGGGACCAAATGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-TGACA-----------TGGCAAAGAGACC-AGTGTCCAG
gi|3 : TTGGTCACGTAG-GGACTGGATAAG----------------------GTTGGGCTAGTTGGCTGTTCAT-CTTAATTCTGGCATTTGGTCATA------------GTCTGTACATCGGTATCAAAGAAAGCTAGGGAAAA-ACCAAATGCTC-ATGGATTTTGGGGCGA----AGT----CGAACCA-GT---TGTA----A-TG------ACATACAT-TG-TA-A---ACCACATGT------C---------------TA-CGG-AC----AT------GG----GAACCAAATGTC-C-TG-AAACATTGGCATGTAA--CCAAGTGTCGAGAG---------ATAT-AGCAGGGG------CAAAGTGTCT--GGATACACTG--GCA---AACAAGCGAGTGTATAGGGGCAATGTTAGCAATTGGCAAA-AGACCAAATGTCTAG
gi|4 : TAAGCCGCCTCA-CTATCGCGTTGTCTTATAGGTAGGGACTATAGTGCATTTGGTCACTTTGAGGGCTGAATAAGTCCTGAAG--------TA-CAGGTTGCGCTGGTCGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTT-GGGTGATGGCAGTAACCCGGACCA-GTAGCTATACCCAAGGG------ACAT---T-GG-CA-AGaaacgagtgtctag
gi|5 : taaattctactggcataaaataaataaacaatagtgagaaaactgaa--C-AAGTGTCAAGGGGACCAAGGGACATTGGCGGGGGGGGGGACCAAATGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-TGACA-----------TGGCAAAGAGACC-AGTGTCCAG
gi|7 : GACATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCATGGACAT----------TGGCAAAGAGACCAAGTGTCCAGgctatagtgacgaaaataccattggccaaagacacgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|7 : GGACCA---AG---TGTCCAA-GGG-----ACAT---T-GG-CA-TCGGACCAAATGT------C---------------CA--TGGAC----ATTGGCAAAG----AGACCAAGTGTC-C-AG-GTATAGTGACGA--------AAATACCAATTGG-CCAAGgtatagtgacgaaaataccaattggccaagacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|8 : gacattggcggggggggAAGCTGCCTCA-CTATAACGTTTTCTTATAGGTAGGGACTAGAGTGCGTTTGGTTACTTTGAAGGCTGAATAAGTCTTGAAGTAGAGATCTA-TAGATTGTGCTGGCTGGCTAGCTAT-TGTAA--CTGACGCTTGGTAATAAGGGCTAAATAAGAC--TACACCGTTGTCAAAGTGAGATTGT---AA-ACTAACTGGTT-AGAGACacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|9 : GGTTGATAGACATAGGTGTAA----AGTGGTCAGGACCA---AG-TGTAC------G------ACGT---TTGGTCA-AGGGAACAAGTGTATAGGAC---------------CAGAGGTACCGCTATTGACAAAGTGTCAGGCTAAGTG---C-AG-GGTCATT
blockSeqs : A G T T TGA C TAGAGATCTATA C . T A A T A GAA C G G G TC AACCC GGTGAC CC AGGCTAGT ACA T T T CAAAGGTAACAAGCAT GA A CGCT G TGTC G . C CC G GA G G T . AAG GG ATGTTAGCAAT G A
blockSeqs : . G T T TGA C TAAGA G . A A A T T . . G . G TG GGTCA GTAGC CC GGG . . . . ATAGGAC A G . T . . . . C A GA A G . . . TG T G A
blockSeqs : . T G . GA T TACA C . . . . . G . . T . G TG AACC GTAGC CC GGG . . . . T A G . G . . . . C G G G G . . . T . . .
blockSeqs : AG . . T T . . G . . . A GT TC GG . . . . C C T . A . . . . C T . G . . . . T .
blockSeqs : T . . T . . . C AG C TG . . . . C . . . . . . . . .
blockSeqs : . AG . G . . . .
blockSeqs : . . . .
blockSeqCons : TAA********** AGCC* GTAGC* CC GGG****** C*** G* ** T*
originalCons : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGGCTGAATAAGTCCTGAAG--------TA-TAGGTTGCGCCGGTTGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTTGGGGTGATGGCAGTAACCCGGACCA-GTAGCTATACCCAA-GG------ACAT---T-GG-CA-AGGGACCAAATGT------C---------------CA-AGGGAC----ATTGGCAAGG----GGACCAAGTGTC-C-AG-GGACATTGGCAAGGGA--C-AAGTGTCAAGGGGACCAAGGGACATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCA-NGACA-----------TGGCAAAGAGACCAAGTGTCCAG
finalCons : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGGCTGAATAAGTCCTGAAGTAA----------GGTTGCGCCGGTTGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTTGGGGTGATGGCAGTAGCC-GGACCAGTAGC-TATACCCAAGGG------ACAT---T-GG-CA-AGGGACCAAATGT------C---------------CA-AGGGAC----ATTGGCAAGG----GGACCAAGTGTC-C-AG-GGACATTGGCAAGGGAC---AAGTGTCAAGGGG-CCAAGGGACATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGTCCAT-GACA-----------TGGCAAAGAGACCAAGTGTCCAG
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAGTGGTACAAGTTTTCATATGTCAATAGACTTCCGGGGGTTATTTGATTTATAGAATCATCGTAAATATATTGATTTAGTAAATAGATCTAGCCTAGAGCACATAAATTTTGGTCATTGATTCCAACTGTAAAGTAACAGTTTCTTTTCAATCATTTGTCAGAATATAAAATCCAGAAATCCTGAGTGTAATCAGGTACATGCCCACAGAAAATATACCGCTTGGCTGGGGTGCACGT
Unaligned ( gi|11 ): TCCAATCGTAGTAAATATATTGATTGTGCAGTTTGATATTACTTTTTTTAGAAAGACATTTTTAACTTGTTGATATCCAAAATCCTAGGTGTGTCCGGTAACGTGCCCACAGTAATAGACCGCT
Unaligned ( gi|12 ): ATAGGTAACAGGCTATTATATTTTTTAGAAAGACATTTAACTTGTTAATATCCAAAATCCCGGGTGTATCCGGTAACGTGCCGACAGTAATATACCGCTCGGCTGGACACACGTT
Unaligned ( gi|13 ): CTAGGTAACAGCTATTATTTTTTTAGAGACATTCAATTGATTAATTTCAAAATATCGGGTGTAATTGGTAACGTGCCCATAGTAATAGACCGCTCGGCTGGAACA
Unaligned ( gi|16 ): CGTTTTAATCATTTGTTAGAATATAAAATCAAGAGTCGGGTACGTGCCCGCAGGAAATACACCCAGGGTGGGG
Unaligned ( gi|17 ): AAATCCAGAGATCCTGAGTGAAATCAGGTACGTGCCCGCAGGAAATATACCGATCGGCTGGGGTGCAC
Unaligned ( gi|18 ): AGAGTTTAAGTAGAAGAGACACAGGGTAGGTCAAATGGCATAGGTGCACAAGTGATTAGGACCAAGT
Unaligned ( gi|19 ): AGATCCTGAGTGTATTCAGGTACGTGCCTGCAGAAAATATACCGCTCGTCTGGGGTGCACGTT
Unaligned ( gi|20 ): AGGTAACAGGCTATTATTTTTTTTAGAGACATTCAATTTGTTAATATCCAAAAT
Unaligned ( gi|21 ): GGTTAAGGGACACGGGGGTAGGTCAATATATATAGGTGTACAAGTG
Alignments
lowQualScore : 1 1 5555555555555 1 111 1 11 11 11 111111 4444444444444444444444 1111 111111 1111 111111 1 1111 2222222 44444444 111 22222222 1111111111 1
lowQualScore : 0 0 1 1 3 3 0 3 0000000000000 1 0 9 3 0 9 0 3 0 1 111 6 2 5 5 44 3 99 5 00 66 3 0 333333 4 88 4 5 2 3333333333333333333333 88 1 0000 5 111111 0000 444444 5 0 5 66 0000 4444444 99999999 7 9 3 6 1 99 666 111 44444444 9999999999 8 5
lowQualScore : . . . . . . . . ............. . . . . . . . . . . ... . . . . .. . .. . .. .. . . ...... . .. . . . ...................... .. . .... . ...... .... ...... . . . .. .... ....... ........ . . . . . .. ... ... ........ .......... . .
lowQualScore : 0 2 0 0 2 2 5 2 2222222222222 4 0 8 2 2 2 2 2 8 0 777 7 5 7 0 22 2 77 7 00 99 0 7 222222 4 33 4 0 6 9999999999999999999999 11 4 6666 0 999999 6666 444444 0 0 0 99 6666 6666666 66666666 3 3 7 7 5 22 777 777 88888888 2222222222 0 5
consensus : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGGCTGAATAAGTCCTGAAGTA---------AG--GTTGCGCCGGTTGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTTGGGGTGATGGCAGTAA-CC-GGACCA-GTAGCTATACCCAAGGG-----ACATT-GG-CA-AGGG-ACCAAGTGT------C---------------CA-AGGGAC----ATT-GG-C----AAGG----GGACCAAGTGT------C-C-AG-GG--AC----ATTGGCAAGGGA--CAAGTGTCAA--GG-CCAAGGGACATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGT-------CCAT-G---ACA--TGG-CAAAGAGACCAAGTGTCCAG
Reference ( family-10704 ) : TAAGCCGCCTCA-CTATCGCGTTNTCTTATAGGTAGGGACTANGGTGCATTTGGTCACTTCGAGGGCTGAATAAGTCCTGAAGTA---------AG--GTTGCGCCGGTTGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGNTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTTGGGGTGATGGCAGTAG-CC-GGACCA-GTAGCTATACCCAAGGG-----ACATT-GG-CA-AGGG-ACCAAATGT------C---------------CA-AGGGAC----ATT-GG-C----AAGG----GGACCAAGTGT------C-C-AG-GG--AC----ATTGGCAAGGGA--CAAGTGTCAAGGGG-CCAAGGGACATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGT-------CCAT-G---ACA--TGG-CAAAGAGACCAAGTGTCCAG
gi|1 : ACCGCTGTCAGAGTGAGCTGGT---AA-ACTAGTTGGCT-AGAGACCTT-GGGTGAAGGCAGTAACCC-GGACCA-GTAGCTATA-CCAAGTG-----TC-------CA-GGGG-A--------------C---------------CA-AGGGAC----ATT-GG-C----AAGG----GGACCAAGTGT------C-CAAG-GG--AC----ATTGGCAAGGGAACCAAGTGT--------CCAAGGGACATTGGT----AAGGGGACCAAGT-TTCAAGGG-ATAGTGGTGTATAAGAC---CAATTGG-------CCAA-G---ACA--
gi|10 : TAATCCGTCTCA-CTATTGTGATTTCTTATTGGCAAAGACCAGGGTACATTTTGTTCCTTCG-GGGTTTATAAAGTCTTGAAGCA---------TTT-GTTGTGCCGGTTGGTTcaattatatttagttagaatagagagaggaacgatagggaccgtagggttaaatggtaatttgtgattatttgtcttgattccttttccaatcgtagtaaatatattgattgtgcacattgatagtttgctaggtaacatgctattattgtttttagaaagacgtttaatatccaaaatcccgggtacattcggtaacgtgcccacagtaatagaccgctcggctggatacacgtt
gi|14 : tagactccagtagcaaactaagataatgaacaacctgaa-----ACATT-GT-CATGGGG-ACCAAATGC------CAAAGGTAACAAGCATCA-AGGAAC----TTT-GG-A----AAGG----ATACCAAGTGT------C-C-GG-GA--AG----ATTGACAAGGGA--Cga
gi|15 : aacaaCGATGACAAAGTGAACTGGA---AACACCCACGGACA-AGAGACCTC---TTGGTCGC-GTA-----GGACCAGGTGACCAAACCCAAAGGCTAGTACACT-GG-TA-Acgagt
gi|2 : ccTAAGCCGCCTCAACTATCGCGTTGTCTTATAGGTAGGGACTATGG-GCATT-GGTCACTT-GAGGGCTGAATAAGTCCTGAAGTA---------AGAGGTTACGCCTGTTGGCTAGCCATACGTAAATCTGACACTTGGTAATAAGGGCTGAATA-GCCTGTAC-TCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTTGGGGTGATGGCAGTAA-CC-GGACCA-GTAGCTATACCCAAGG------ACATT-GG-CA-AGGG-ACCAAGTGT------T---------------CA-AGGGAC----ATT-GT-C----AAGG----GAGCCAAGT-T------CGC-AGCGG--AC----ATTGGCAAGGGA--CAAGTGTCAAGGGGACCAAGGGACATTGGCGGGGGGGGGGACCAAATGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGT-------CCAT-G---ACA--TGG-CAAAGAGACC-AGTGTCCAG
gi|3 : CTGGA-TA---------AG--GTTGGGCTAGTTGGCTGTTCAT-CTTAATTCTGGCATTTGGTCATA------------GTCTGTACATCGGTATCAAAGAAAGCTAGGGAAAA-ACCAAATGCTC-ATGGATTTTGGGGCGA-------AG-TC-GAACCA-GTTGTAATGAC----AT-----ACATT-G--TA-A----ACCACATGT------C---------------TA-CGG-AC----AT------------GG----GAACCAAATGT------C-C-TG-AA--AC----ATTGGCATGTAAC-CAAGTGT---------CGAGAGATA-TAGCAGGGG------CAAAGTGTCT--GGATACACTG--GCA---AACAAGCGAGTGTATAGGGGCAAT-GTTAGCAATTGG-CAAA-AGACCAAATGTCTAG
gi|4 : ttggtcacgtagggaTAAGCCGCCTCA-CTATCGCGTTGTCTTATAGGTAGGGACTATAGTGCATTTGGTCACTTTGAGGGCTGAATAAGTCCTGAAGTAC--------AG--GTTGCGCTGGTCGGCTAGCCAT-CGTAAATCTGACACTTGGTAATAAGGGCTGAATAAGCCTGTACATCGTTGTCAGAGTGAGCTGGT---AA-ACTAACGGGTT-AGAGACCTT-GGGTGATGGCAGTAACCC-GGACCA-GTAGCTATACCCAAGGG-----ACATT-GG-CA-AGaaacgagtgtctag
gi|5 : taaattctactggcataaaataaataaacaatagtgagaaaactgaa--CAAGTGTCAAGGGGACCAAGGGACATTGGCGGGGGGGGGGACCAAATGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGT-------CCAT-G---ACA--TGG-CAAAGAGACC-AGTGTCCAG
gi|5 : T-GT-CA-AGGGGAC-----------------------------CA-AGGGAC----ATT-GG-CGGGGGGGG----GGACCAAATGT------C-CAAG-GG--AC----ATTGGCATCGGAC-CAAATGT--------CCA--TGACA-TGGC----AAAGAGACC-AGTGTCCAGGCT-ATAGTG--AC----GA-----AAATA--------CCAT----------TGGCCAAAGACACgctatagtgacgaaaataccattggccaaagacacgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|7 : caagGACATTGGCGGGGGGGGGGACCAAGTGTCCAAGGG-ACATTG--GCATCGGAC---CAAATGT-------CCATGG---ACAT-TGG-CAAAGAGACCAAGTGTCCAGgattatatacacacaaagtcagaatagggagatgggaactgtaggttaatggtaattgtgttattcagtcttgatttcttttcaatagtagtaaattatt
gi|7 : -GGACCA---AG---TGTCCAAGGG-----ACATT-GG-CA-TCGG-ACCAAATGT------C---------------CA--TGGAC----ATT-GG-C----AAAG----AGACCAAGTGT------C-C-AG-GT--AT----AGTGACGA-------AAATACCAATTGG-CCAAGgtatagtgacgaaaataccaattggccaagacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|8 : gacattggcggggggggAAGCTGCCTCA-CTATAACGTTTTCTTATAGGTAGGGACTAGAGTGCGTTTGGTTACTTTGAAGGCTGAATAAGTCTTGAAGTAGAGATCTATAG--ATTGTGCTGGCTGGCTAGCTAT-TGTAA--CTGACGCTTGGTAATAAGGGCTAAATAAGAC--TACACCGTTGTCAAAGTGAGATTGT---AA-ACTAACTGGTT-AGAGACacacgattatatacacacaaagtcagaatagggagatgggaactgtagggtttaatggtaatttgtgattattagtcttgatttcttttccaatagtagtaaatatattgcta
gi|9 : GGTTGATAGACATAGGTGTAA----AGTGG-TCAGGACCA---AG-TGTAC------G-----ACGTTTGGTCA-AGGG-AACAAGTGTATAGGAC---------------CAGAGGTACCGCTATT-GA-C----AAAGTGTCAGGCTAAGTG---------C-AG-GG--TC----ATT
gi|9 : gtagggttaagggacacgggggtaGG-ACCAAGTGT------A---------------C-----GAC----GTTTGGTC----AAGG----GAAC-AAGTGTATAGGAC-C-AG-AGGTACCGCTATTGACA--------AAGTGTCA---GG-CTAAGtggactg
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAGTGGTACAAGTTTTCATATGTCAATAGACTTCCGGGGGTTATTTGATTTATAGAATCATCGTAAATATATTGATTTAGTAAATAGATCTAGCCTAGAGCACATAAATTTTGGTCATTGATTCCAACTGTAAAGTAACAGTTTCTTTTCAATCATTTGTCAGAATATAAAATCCAGAAATCCTGAGTGTAATCAGGTACATGCCCACAGAAAATATACCGCTTGGCTGGGGTGCACGT
Unaligned ( gi|11 ): TCCAATCGTAGTAAATATATTGATTGTGCAGTTTGATATTACTTTTTTTAGAAAGACATTTTTAACTTGTTGATATCCAAAATCCTAGGTGTGTCCGGTAACGTGCCCACAGTAATAGACCGCT
Unaligned ( gi|12 ): ATAGGTAACAGGCTATTATATTTTTTAGAAAGACATTTAACTTGTTAATATCCAAAATCCCGGGTGTATCCGGTAACGTGCCGACAGTAATATACCGCTCGGCTGGACACACGTT
Unaligned ( gi|13 ): CTAGGTAACAGCTATTATTTTTTTAGAGACATTCAATTGATTAATTTCAAAATATCGGGTGTAATTGGTAACGTGCCCATAGTAATAGACCGCTCGGCTGGAACA
Unaligned ( gi|16 ): CGTTTTAATCATTTGTTAGAATATAAAATCAAGAGTCGGGTACGTGCCCGCAGGAAATACACCCAGGGTGGGG
Unaligned ( gi|17 ): AAATCCAGAGATCCTGAGTGAAATCAGGTACGTGCCCGCAGGAAATATACCGATCGGCTGGGGTGCAC
Unaligned ( gi|18 ): AGAGTTTAAGTAGAAGAGACACAGGGTAGGTCAAATGGCATAGGTGCACAAGTGATTAGGACCAAGT
Unaligned ( gi|19 ): AGATCCTGAGTGTATTCAGGTACGTGCCTGCAGAAAATATACCGCTCGTCTGGGGTGCACGTT
Unaligned ( gi|20 ): AGGTAACAGGCTATTATTTTTTTTAGAGACATTCAATTTGTTAATATCCAAAAT
Unaligned ( gi|21 ): GGTTAAGGGACACGGGGGTAGGTCAATATATATAGGTGTACAAGTG