lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111 111111111111111111111111111111
lowQualScore : 1111111111 1 11111111111 111111111111111111111 222222222222 1111111 1111111111 22 1111 11111111111 1 33333 111111 55555555555555555555555555555555555555555 333333333 3 2222222222222222222222222222222222222222222222222222222222222222222 11 111111 11111 6666666666666666 22222 33 1 5555 2 44 2 99999999999 1 5555555 11 9999999999999999999999999999999999999999999999 1 22 4 11 4 22 2 6666666666666666666666666666666 11 3333333 1 22 666666666666666666666666666666 1 4
lowQualScore : 55 3 3 3 2222222222 3 2 7 3 4 3 9 3 1 3 88888 77 1 3 3 55555555555 3 3 88888 44 44 444 3 3 44 999 33 3 777777777777777777777 3 3 44 8 3 7 999999999999 666 55 55 3333333 55 2222222222 3 00 1111 7777 66666666666 6 0 3 00000 888888 4 99 999999 777 444 4 4 4 1 4 0 11111111111111111111111111111111111111111 4 111111111 55 4 4 3 3333333333333333333333333333333333333333333333333333333333333333333 888 0 55 444444 9 5 33333 6666666666666666 00000 00 3 9999 0 33 4 3 7 2 77777777777 5 2 5555555 6 88 4444444444444444444444444444444444444444444444 0 44 3 0 22 0 33 0 3 4 5555555555555555555555555555555 88 9999999 3 88 666666666666666666666666666666 6 5 0
lowQualScore : .. . . . .......... . . . . . . . . . . ..... .. . . . ........... . . ..... .. .. ... . . .. ... .. . ..................... . . .. . . . ............ ... .. .. ....... .. .......... . .. .... .... ........... . . . ..... ...... . .. ...... ... ... . . . . . . ......................................... . ......... .. . . . ................................................................... ... . .. ...... . . ..... ................ ..... .. . .... . .. . . . . ........... . . ....... . .. .............................................. . .. . . .. . .. . . . ............................... .. ....... . .. .............................. . . .
lowQualScore : 00 3 3 1 5555555555 3 1 3 3 0 1 2 3 0 3 33333 99 7 2 3 88888888888 3 1 33333 66 22 999 1 1 66 222 88 3 666666666666666666666 3 3 66 0 3 3 888888888888 444 00 00 1111111 00 9999999999 6 44 4444 7777 88888888888 7 2 6 11111 000000 0 55 333333 000 666 0 0 0 4 7 1 00000000000000000000000000000000000000000 0 444444444 00 0 4 6 1111111111111111111111111111111111111111111111111111111111111111111 888 2 88 444444 4 0 11111 5555555555555555 77777 77 3 7777 0 00 0 0 5 5 55555555555 0 5 0000000 0 33 8888888888888888888888888888888888888888888888 0 22 2 0 55 0 88 0 2 0 3333333333333333333333333333333 33 3333333 3 33 333333333333333333333333333333 0 0 0
consensus : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCA-ACGCCAGGGGGAGTCGGAAAT-CCTC-G-----CTTCGA--TTTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATG-ATG--------T---AT-------CGC-A-CGGAA--CAATACG-ATAACTAAGGT-ACAT---C--------T---AT--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----T----TCGAC---A-------CA-ATTTGCAAAATAGA-A--CTATTT---T--GC-AGT--GTCG---A-TGACAAAAA---CATTAC-A-TTA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAC---ATCC-AAATGTATCGTATTTTCGTTGTT-CTTCATTGTT-T-A-------ACGCCCAGT-ATTTGG-AAAATA-CTCGTTT---ACGGGA--TGC-A-T-N-GG-TCG---------A--TTTTTGT-CAACA-T---TGC-AANGNTA---ACGCAG-GGGG------GAGTCGATTTT-C-G-TNAAAGATTC--ACAGACG--G--GGAGTCG-CGACAAAAT-AA-TGTTG---TCATTGCATTT-ANANGTGGTACANTCCTTGATTGACCCTGAAACGATCCTANTTTTGACAATTTTT--TGTGCGCTCTC--G--TG-CG-----GTCTTTTC---GT--TT---GGCTTG-G--TTTACCGAT-CTCCAACCGCTTTGT-GTTCA-NAG-TTCACCAAA-CGTTCACCGGTCCAT---TGTT--A-T-GTTTG-TTTT-GCAT---CA--AAAGTC-TAACG-TTCAT-ACAAG-TAGAGACT------------AANAGTTTGAAAATTTGTTCGATCCTGCTAGCATTTGAA
Reference ( gi|2 ) : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CATTCA-ACGCCAGGGCGAGTCGGAAAT-CTTC-G-----CTTCGA--TTTCAGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATG-ATG--------T---AT-------CGC-A-CGGAA--CAATAGG-ATAACTAAGGT-ACAT---C--------T---AT--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TTTAGTATTCTCAAACAC----T----TCGAC---A-------CA-ATTTGAAAAATAGA-A--TTATTT---T--GT-AGT--GTCG---A-CGACAAAAA---CATTAC-A-TTA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAT---ATCCAAAATGTACCGTATGTTGGTTGTTCCTTCATTGTT-T-T-------ACGCCCAGT-ATTTGG-AAAATAGCTCATTTTGCACGGGAACTGC-A-T-T-GG-TCG--------CACCTTTTTGT-CAACACT---CGC-AACGG-A---ACGCAG-GGGG------GAGTCGACTTT-C-G-TAAAAGATGC-TACA-ACA--G--GGAGTCG-CAACAAAAC-AA-TGTTATGCTCATT-CATTTCAAATGTCGTACAGTT---------CCCTGAAACGATATTACTTT--GCAA-TCTT--TGTGCGCTCTTACGCTTGTTGTCACTGTCTTTT----AT--TT---GACTTG-A--TTTACCGAT-CTCCAACCGCTTTGTCGTTCA-CAGCTTCACCAAACCGTTCA-CGGTCTAT---TGTT--A---GTTTG-TTTT-GCAT---CA--AAAGTCTTAATA-TTCAT-ACAAG-GAGAGACT------------AAAAGTTTG---------TCAATCATGCTA-CATTTGAACAC
gi|4 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTTG-CTAAAAAGAACG-----------CATTCA-ACGCCAGGGGGAGTCGGAAAT-CC-C-GGCCCTCTTCAA--TTTCAGCCG-AAAG-----------GTAGGTCA-CG-TTTTCT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATG-ATG--------T---AT-------AAC-A-CGGAA--CAATATG-ATAACTAAGGT-ACAT---C--------T---TT--T--AA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----T----TCAAC---A-------CC-ATTTGCAAAATAGA-A----AATT---T--GC-AGT--GTCA---A-TGACAAAAA---CATTAC-G-TTG-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGC-AG--AAC---ATCC-AAATGTATCATAT-TTAGTT----CTTCATTGTT-T-A-------ACACCCAGT-ATTTGG-AAAATA-CTCA-TTTGCA---GAA-TGC-A-T-G-GGATCG---------A--TTCTTGT-CAACA-T---TGC-AAAGGTA---ACGCAA-GGGGGTGGGTGGGTCGATTTT-C-A-TTAAAGATTCAGACA-G-G--G--GGAGTCG----CAAAAT-AATTGTTG---TCATT-CATTT-ATAGGT-GTACAGTCCTTGATTGACCCTGAAACAATCCTACTTTTGACAA-TTTTTGTGTGTGCTCT-----CTG-TG----TGTCCTCT----GT--TCATAGATTTACA--TTTACCGAT-CTCCAACCGC-TTGT-GCTCA-GAA-TTCAACAAG-CGTTCACCGGTC
gi|1 : ACCGTGGTTAACAAACCGTTAGCTATTGGA----------GAGTCGGCTAAAAAGAAAGCG-GGAGTCGGCATTCACGCGCAGGGGAGAGTCGAAAAT-CCTC-G-----CTTCGAT-TTTCAG-CG-AAAG-----------GTAGGTCA-CGGTTTTCTTTTTGCTTGCATTT--TTGTAT--CGCATTTACTT--TTTACATAA-ATG-GTG--------CTCAATG------CGC-AGCGGAAGGCAATAGGAATAACTAAGGTAACAT---CA-------T---AC--A--TATATG---GCAGTTTGCCTGGAATTTGACC--T-------TTTAGT-TTCTCAAACAC----T----TCAAC---AGG-----CA-ATTTGCAAAATAGA-AATTTTTTT---T--GTAAGTG-GTCG---ACCGACAAAAAAAGCATTACAA-TTAGCGAA-ATAATTACAGCAAGAAAACTTAAAAGTCAGACAGC---ATCCCAAATGTA-TGTATTTTTGTTGTT-CTTCATTGTT-TAA-------ACGCCCAGTAATTTG----AATACATCATTT-----GAGGAGTGCTG-T-T-GG-TCG---------A--TTTTTGTCCAACATTTGGCGT-AAGGT-A---ACGCA---GGG------GAGTCGATTTT-C-GTTAGAAAATTC--A-A-ACAGGG--GGAGTCG-CAA-AATA--AA-TGTTGTacataggtttcaatcttttgttgtg
gi|12 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CATTCA-ACGCCAGGGAGAGTCGAATAT-CCTC-T-----CTTCGA--TTTCAGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATG-ATG--------T---AT-------CGC-A-CGGAA--CAATAGG-ATAACTAAGGT-ACATATACAATG----T---AT--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TTctttttgtgtgcgcttctaggcgtgtcggtcttttcataattttgggcattttaccgatgctccaaccggttgtgtttagcagttcaccaaacgttcaccggtctattttattgttttttttggcatgcaagaaggtctaatacttcatacaagttagagactatagaagaggtgaaaaatttgaaaatttgttcgatcctgctagcatttgaagca
gi|10 : ACCGTG--TA-CAC-CAATTG-CTTT-------------------------AAAGAACGGG-GGAATCG-CTTTTA-ACGCCAGAGGGAGTCGGAAAT-CCTT-G-----CTTCGA--ATTCGGCCGGAAAGAAGGCCTACATGTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTACAA--C-CA-TTACTT--TT---ACAA-AAA-ATA--------T---GC-------CAC-A-CGGAA--CAATACG-ATAATCAAGGT-ACAT---T--------TTACATTCA--TC---A---GCAGGTTGCCTGGA--TTAACCCTC-------TCTAGTATGGTTTAATACAGCAT----TGGAC---ACTGCTCTCATATTTGGAAAAAAG
gi|22 : ACCGAG--TA-CAA-CCGTT---CTTGGGG----------G---CG-CTAAAAAGAAC-GG-AGAGTCG-CTTTC--ACGCCAgc
gi|24 : cATCGTG--TA-CAA-CCATTA-CTTTGGGA----------GAGTCG-C
gi|25 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------G
gi|27 : cccACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------
gi|26 : cACCGTG--TA-CAA-CCGTTA-CTTTGGG
gi|5 : tacCCATG--CA-TAA-CCGTTA-TTTGGGGGAGTCTGCCACGAGTCA-CTAATAAGGACGAG-GGAGTCA-CATCTA-ATGCCAGGG-GAGTC---AAT-CTCC-G-----CTTGGA--ATTCGGCAG-GAAA-----------GTAGGTTA-CCATTTTTT-----TTTTTA--T--TTCTAT--C-CA-AAACTT--TT---ACAA-AAG-ACA--------T---ATAAATTATTGC-A-CGGAA--CAATATG-ACTACCAAGGT-GCGT---C--------T---AC--A--TC---A---GCAGTTTGTCTGGA--TTAACC--T-------TTTAGTATTGTCAAACAC----T----TTGGC---A-------CA-ATATGCAGAATGGA-A---CATTT---TC-GC-TAT--GTCA---G-TAACAAAAA---CATTGC-A-CAA-TAGA-ATAATTAA-ACAGCAAAA---ACAGAT-AG--CATGTAATTCAAAG-GTTTTGT-TTTTCATTGCT-TTTCATTGTT-T-A-------ACACTCAGG-ATGTGG-AAAATA-CTCATTT---ACGGAA--TGC-A-TGC-GG-TTG---------A--TATGTGT-CAACA-T---TGCAAATGC-A---A--CAGAGGGG------GAGTCCAATTT-CGG-TAAAGAAT-----CAGACA--GGAGGAGT
gi|6 : --TA-CAA-CCGTTA-CTTTGGGA----------TACTCG-CTAAAAAGAACGGG-AGAGTCG-CTTTCA-ACACCAGGGGGTGTCGGAAAT-TCTT-G-----CTTCGA--ATTCAACCG-AAAG-----------GTAGCTCA-GGCTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA--TG-ATG--------T---AT-------CGC-A-CGGAA--CAATATG-ATAACTAAGGT-ACAG---G--------T---AT--A--TA--------CAGTTTGCCGGGA--TTGACC--T-------TCTAGTATGGTCAAGCAC----T----TCGAC---A-------CA-ATTTGCAAAATAGA-A--A-ATTT---TC-GC-AGT--GTCG---A-TGACAAAAA---CATTAC-A-TTA-TGAA-ATAATTAC-GCAAGAAAACTT------------------CCCAA--TGAATCATATTTTG-TTGTTT-TTCATTGTT-T-A-------ACGCCCAGT-ATTGGG-AAAATA-CTCATTT---GCGGGA--TGC-ATT-T-GG-TCG---------A--TTCTTGT-CAACATA---GAA-AATGT-A---ACGCA--GGGG------GAGTCGATTTT-C-G-TTAAAGta
gi|3 : A-CAA-CCGTTA-ACTTGGGA----------GAGTCG-CTGCAAAGAACGGG-GAGGTCG-CATTCA-ACGCAAGGGAGAGTCGAAAAT-CCTCGG-----CTTCGA--TTCAGGCCG-AAAG-----------GTA-GTCATCGCTTTGTT-----CTTGCA--T--TTGCAT--C-CA-TTACTT--TT---ACAA-ATGAATG--------T---AT-------CGCAA-GGGAA--CAATAGG-ATAACTAAGGT-ACAT---A--------T---AT--A--TA---G---GCAGTTTGGACGGG--TTGA-C--T-------TCTAATATGGTCATACA-----T----TCGACA--A-------CA-ATTTGCAAAATAAA-G----ATTT---T--GC-AGT--GTCG---A-TGAC-AAAA---CATTAC-A-TTA-TG-A-ATAATTAC-GCAAG-AAACTTGAAAGT-----GAC---ATCC-AAATGAATCATAT-TTTGTTGTT-TTTCATTG-T-T-A-------ACG-CCGGT-ATTTGG--AAATA-CTCATTT---GCGGGA--TGC-A-T-G-GG-TCG--------ATTCTTT------AAGA-----TGA-AAGGT-A---ACGCA--GGGG------GAGTCGATTTT-CGG-TTAAAGATTC--AGA-CCA--G--GGGGTAGTCGGCAAAATAAA-TGTTG---TCATTGCATT--AAATGTGGTACATTT-----------CTGAAACGATCTTAATTT----AATTTTT--TGTGCGCTCTC-CG--TG-TGTC-C--TCTTTTC---ATAGTT-----CTTG-GGCTTTACTGAT-CTCCAACCGC-TTGT-GTTCA-GAG-TTGACCAAAGCGTTCC-GGGTCCGTTTATGTTTCAATCGTTTGTTTTT-ACAT---CA--AAAGTCGTAA-G-TTCATCACAAG-CAGAGACT------------AATAG
gi|19 : -CTTTGGGA----------GAGTCT-CTAAAAAGAACGGG-GAAGTCG-GTTTCA-ACACCAGGGGG----GGGGGT-CCTC-G-----CTTCGA--TTTCGGCCG-GAAG-----------GTAAGTCA-CTGTTTTTT-----CTTGCA--T--TTATAG--C-CA-TT
gi|15 : GGT----------GAGTTG-C-AAAAAGAATTGGTGGAGTCA-CTTTTA-ACTACTGGG-AAGTCGGAATTTCTTT-G-----CTTGGA--TT---GAC--AAAG-----------ATAG-TCA-TGGTTTTTT-----CTGGCA--TAATTATAG--C-TA-TTACTTGCTTG--ACAATGTG-ATG--------
gi|16 : ----------GAGTTG-C-AAAAAGAATTGGTGGAGTCA-CTTTTA-ACACTGGTGGAAGTCGAATTT-CTTT-G-----CTTGGAAATT---GACA-AAAG-----------ATAGGTCA-TGGTTTTTT-----CTGGCA--T--ATATATAGC-TA-TTACT------------------TG--------T-------------------GGAA--CAATGTG-ATAACTaactagataac
gi|7 : tGTCG-CATTCA-ACGCCAGGGAGAGTCGGAAAT-TCTC-G-----CTTCGA--TTCCCGCCA-AAAG-----------GTAGGTAA-CTTTTTTTT-----CTTGTA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATG-ATG--------T---AT-------CAC-A-CGGAA--TAATATG-ATAATTAAGGT-ACAT---TTACAGATGT---AT--A--TA---G---GCAGTTTGTCGGGA--TTAACC--T-------TCTAGTATGGTCAAACAC----T----TCGGC---A-------CA-ATTTGCAAAATAGA-A--AAGTTT---C--AC-AGT--TTCG---A-TGACAAAAA---CATTAC-A-TTA-TGAA-ATAATTAT-GCAAGAAAACTTAAAAGT-AG--AAC---ATCC-AAATGAATCATAT-TTTGTTGTT-TTTCATTGTT-T-A-------ACGTCCAGT-ATTTGG-AAAATA-CTAA-TTAGC---GGAA-TGC-A-T-G-GG-GGGT-------CAATTTTTT-T-CAACA-T---TGC-AAAGGTA---ATGCAG-GGGG------GAGTCAATTTT-C-A-T------T-----CAGACG--G--GGAGTCG-CAA
gi|9 : -ACGCCAGGAGGATTCGATAAT-CTCC-G-----CTTGGA--AATCGACAG-CAAA-----------GTAGGTTA-CCATTTTGT-----CTTGCC--T--CTCTAA--C-CA-TTACTT--TT---GCAA-AAG-ATATATAGGCCT---AT-------CAC-A-CGGAA--CAATAAG-ATAACTAAGGTAACAT---C--------T---AC--A--TC---A---GCAGTTTGTCTGGA--TTAACC--TTTTTAAATTTAGTATAGCCAAACAC----T----TCGAA---A-------CC-ATTCGAAAAA-AAA-A--TT
gi|13 : agaacggacttt--TTGTAA--C-TA-ATAATT--GC---AGAA-TTA-CTT--------T---AT-------TAC-A-TGGCA--CAATGTA-ATAACTAAGG--GCAT---T--------T---AC--A--TT---G---GCAATTTTGCAGGC--TTTATC--A-------T---GTATGCTCAAACACA---TGGAATCTACTTTG-------CAGATTTCAAAAATG------TTACCT---G--GT-ACTAAGGCA---G-TGACAGAAA---CATTTC-A-T---TGAAGATATTTAC-gcatgtgaaaaaagcaatataggtgtatcaaattattctaatattgctaaaaaaaaattatagaaag
gi|8 : GC-A-CGGAA--CAATACA-ATGGCCAAGGA-ACAT---C--------T---GT--ACATA---ACATGCAGTTTGCCTGGA--TCAACC--C-------CCAAGCGTGGTCAAACAC----T----TCGGC---A-------CC-ATTTGCAGTATGGA-A--CCTTTTAGCT--AT-A-T--GTCG---G-TGACAAAAA---TATTGC-A-TTA-CAAA-ATAATTAC-GCAGCAAAACCAGATAGT-A---AGT---AT---------------TTTTCATTATT-CTTCATTGTT-T-TTAAATTAACACCCAGA-ATTTGG-AAAATACCT-GTTT---ACGGAA--TGC-A-T-GAGG-TC---------TATC--CGTGT-CAACG-T---TGC-AAAAGTA---ACAGAG-GGAG------GAGTCAAATTTCC-G-TAAAata
gi|18 : ATAC----T----TCGAC---A-------CA-ATTTGCAAAATAGAGA--CT-TTT---A--GC-AGT--GTCG---A-TGTCAAAAA---CATTAC-T-TTA-TGAA-ATAATTAC-GAATGAAAACTAAACATT-AG--AAC---ATCC-AAATGTATCATATTTTGtattcaaataggaggagtcag
gi|14 : GGC---A-------AA-ATTTGCAGAATGGA-A--C-ATTT---TCGGT--GT--CTCGGTAA-CGA-AAAGA---TGTTAT-GGTCA-TAGA-ATAATTAC-ACAGCAAAACTTGA---T-AG----T---AT-TAAAAT-TAC------TT---------TTCATTGTTAC-A-------ACACTCAGG-ATAAGGAAAAATA-CTCGTTT---ACGGAA--TAC-A-TGC-GA-TCG--------t
gi|11 : TTAATTGTTC-TTCATTGTT-C-A-------ACACTCAGA-ATTTGG-AAGATA-CTCGCTT---ACAGAA--TAT-A-T-TGGG-TCGATAAGTATCAAATTTT-----AAAA-----AGT-AATGG-AGGGATGGAG-GGGG--------GTCGAATTT-C-G-GTGAAGATGA-TAa
gi|23 : atcgaaaagttttattaatttGTTGTTC-TTCATTGTT-T-A-------ACGGCCAAT-ATTTGG-tgttatagcatgttgacaagggtacggatttgatatttgttgacatgtcgcatatgggtgtcactctatttctgaaa
gi|1 : tt--TGTGCGCTTCTAGGCGTGTCG-----GTCTTTTCATAAT--TTTG-GGCAT-----TTTACCGATGCTCCAACCGGTT-GT-GTTTAGCAG-TTCACCAAA-CGTTCACCGGTCTAT---T-TT--ATT-GTTTT-TTTTGGCATG--CAAGAAGGTC-TAATACTTCAT-ACAAGTTAGAGACTATAGAAGAGGTGAAAAATTTGAAAATTTGTTCGATCCTGCTAGCATTTGAA
gi|17 : accgtggttaacaaaccgttagctattggagagtcggctaaaaagaaagcgggagtcggcattcacgcgcaggggagagtcgaaaatcctcgcttcgattttcagcgaaaggtaggtcacggttttctttttgcttgcatttttgtatcgcatttactttttacataaatggtgctcaatgcgcagcggaaggcaataggaataactaaggtaacatcatacatatatggcagtttgcctggaatttgaccttttagtttctcaaacacttcaacaggcaatttgcaaaatagaaattttttttgtaagtggtcgaccgacaaaaaaagcattacaattagcgaaataattacagcaagaaaacttaaaagtcagacagcatcccaaatgtatgtatttttgttgttcttcattgtttaaacgcccagtaatttgaatacatcatttgaggagtgctgttggtcgatttttgtccaacatttggcgtaaggtaacgcaggggagtcgattttcgttagaaaattcaaacagggggagtcgcaaaataaatgttgtctttttg--TTTACCGAC-ATCCAATTG-TTTGT-GTTCA-CAG-TTCACCAAAC-GTTCA-CCG---AT---TGTT--T---ATAGG-TTT---CATTCTCA--AAAGTCCT--CA-TTCAT-ACAAG-TAGAGACT------------Agca
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TCGATTCGTGTCAACGTTACAAAAGTAACGTAGGGGGAGTCTTTTATCGGCAAGATTCAGATTGGAGGAGTCACAAAATAATTGCTGACATTCATCTAAATGTTTGATAT
Unaligned ( gi|21 ): AGAATTATACAAGCATACCTCATTTGCAGGGGATCGCAACATGGTAACAAGATCGGGGGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 11111 11111111111 11111111 1111111 111111111111111111111111111111111111 1111111111 33333 22222222222 1 1111111 2222 111111111 111111 111111 22222222222 2222 1 1 111 2 1 1 8888888888 333 1 1 000000000000000000000000000000000000000000000000 11 1 111 444444 1 111 11111 11 1 3333333 1 11 666666666666 1 111111111 1
lowQualScore : 44 3 3 2 1111111111 3 1 6 2 1 2 2 3 3 00000 44 1 3 44444444444 3 2 77777 44 33 33 2 2 44 888 3 3 11111111 555 4444444 3 3 44 7 3 6 999999999999999999999999999999999999 44 1111111111 0 7777 555 77 1 44 3 22222 555 6 6 3 77 44 3 555 44 6666 3 3 3 3 3 1 33333333333 4 4 1 77 5 3 1111111 3 3 33 3 4 4 1 777 1 55 4 8 0000 3 3 55 11 4 4 55 4 111 999999999 111111 4 111111 33333333333 6666 6 6 444 7 3 0 1 1 5 1 2222222222 0 1 444 3 0 0 777777777777777777777777777777777777777777777777 8 55 0 8 99 8 6 0 99 444 2 444444 0 333 88888 33 0 3333333 0 00 555555555555 1 0 444444444 2 5
lowQualScore : .. . . . .......... . . . . . . . . . ..... .. . . ........... . . ..... .. .. .. . . .. ... . . ........ ... ....... . . .. . . . .................................... .. .......... . .... ... .. . .. . ..... ... . . . .. .. . ... .. .... . . . . . . ........... . . . .. . . ....... . . .. . . . . ... . .. . . .... . . .. .. . . .. . ... ......... ...... . ...... ........... .... . . ... . . . . . . . .......... . . ... . . . ................................................ . .. . . .. . . . .. ... . ...... . ... ..... .. . ....... . .. ............ . . ......... . .
lowQualScore : 66 1 1 9 7777777777 1 2 2 9 0 9 9 1 1 88888 11 5 1 66666666666 1 1 77777 22 99 99 9 9 22 555 1 1 22222222 888 2222222 1 1 22 0 1 7 666666666666666666666666666666666666 66 1111111111 4 1111 444 33 1 66 3 66666 888 7 7 3 99 66 3 888 66 9999 3 3 3 6 5 0 88888888888 0 0 2 11 6 6 8888888 6 6 77 6 0 0 2 000 2 55 0 0 0000 6 6 00 77 0 0 55 0 888 666666666 555555 0 333333 44444444444 8888 0 0 000 5 2 0 0 0 0 0 3333333333 7 0 333 2 0 0 444444444444444444444444444444444444444444444444 0 66 8 0 00 0 0 8 44 000 5 000000 0 555 55555 88 0 8888888 0 88 000000000000 0 0 888888888 5 0
consensus : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCAAC-GC-CAGGGG-GAGTCGGAAATCCTC-G-----CTTCGA-TTTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATANG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCGA---CA--CAATTTGCAAAAT--AGA-A--C-ATT---TT-GC-A-GT--G--TCGA-TGACAAAAA---CA--TTAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGTATCGTATTTT-GTTGTT-CTTCATTGT-------T-T-AACGCCCAGT-ATTTGG-AAAATA-C-TCGTTT---GCGGAA--TGC-A-TG--NGG-TCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAG-G------GGG------GAGTC-GATTTTC-GTTA-AAGATTC-ANANA-C--GGGGAGTCG-CGACAAAATAAATTGTTG---TCATT-CATTT-AAATGT-GTACAGTC---------CCCTGAAACGATCTTACTTT--GCAATTTTT-TGTGCGCT-CTNG-CG--TGT-----CGT-GTCTTTTCATA-TT---GACTTG-GGC--TTTACCGAT-CTCCAACCGCTTTGT-GTTCAG-AG-TTCACCAAA-CGTTCACCGGTC-CAT---TGTT---ATCGTTTG-TTTTG-CA---T-CAAAA--GT-C-TAATA-TTCAT-ACAAGT-AGAGACTAC-----------AAAG-TTTGAAAATTTGTTCGATCNTGCTAGCATTTGAA
Reference ( family-1066 ) : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCAAC-GC-CAGGGG-GAGTCGGAAATCCTC-G-----CTTCGA-TTTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATACG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCGA---CA--CAATTTGCAAAAT--AGA-A--CTATT---TT-GC-A-GT--G--TCGA-TGACAAAAA---CA--TTAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGTATCGTATTTTCGTTGTT-CTTCATTGT-------T-T-AACGCCCAGT-ATTTGG-AAAATA-C-TCGTTT---ACGGGA--TGC-A-T---NGG-TCG-A--TTTTTGT-CAACA-TT--GCA-ANGNTAACGCAG-G------GGG------GAGTC-GATTTTC-GTNA-AAGATTC-ACAGA-C--GGGGAGTCG-CGACAAAAT-AA-TGTTG---TCATTGCATTT-ANANGTGGTACANTCCTTGATTGACCCTGAAACGATCCTANTTTTGACAATTTTT-TGTGCGCT-CT---CG--TG------CG--GTCTTTTCGT--TT---GGCTTG-G----TTTACCGAT-CTCCAACCGCTTTGT-GTTCAN-AG-TTCACCAAA-CGTTCACCGGTC-CAT---TGTT---AT-GTTTG-TTTTG-CA---T-CAAAA--GT-C-TAACG-TTCAT-ACAAGT-AGAGACTA------------ANAG-TTTGAAAATTTGTTCGATCCTGCTAGCATTTGAA
gi|1 : ACCGTGGTTAACAAACCGTTAGCTATTGGA----------GAGTCGGCTAAAAAGAAAGCG-GGAGTCGGCATTCA-C-GCGCAGGGGAGAGTCGAAAATCCTC-G-----CTTCGATTTTCAG-CG-AAAG-----------GTAGGTCA-CGGTTTTCTTTTTGCTTGCATTT--TTGTAT--CGCATTTACTT--TTTACATAA-ATGG-TG--------CTCAATG------CGCAGCGG-AAGGCAATAGGAATAACTAAGGTAACAT---CA---T---A--------C--A--TATATG---GCAGTTTGCCTGGAATTTGACC--T-------TTTAGT-TTCTCAAACAC----TTCAA---CAGGCAATTTGCAAAAT--AGA-AATTTTTT---TT-GTAA-GTG-G--TCGACCGACAAAAAAAGCA--TTACAA--T-TAGCGAA-ATAATTACAGCAAGAAAACTTAAAAGTCAGACAGC---ATCCC-AAATGTAT-GTATTTTTGTTGTT-CTTCATTGT-------T-TAAACGCCCAGTAATTTG----AATA-CATCATTT---GAGGAG--TGCTG-T---TGG-TCG-A--TTTTTGTCCAACA-TTTGGCGTAAGGTAACGCA---------GGG------GAGTC-GATTTTC-GTTAGAAAATTC-AAACA-G--GGGGAGTCG----CAAAATAAA-TGTTG---TCTTT
gi|1 : TTTTG-TGTGCGCTTCTAGGCG--TGT-----CG--GTCTTTTCATAATT------TTG-GGCATTTTACCGATGCTCCAACCGGTT-GT-GTTTAGCAG-TTCACCAAA-CGTTCACCGGTC-TAT---T-TT---ATTGTTTT-TTTTGGCA---TGCAAGAAGGT-C-TAATACTTCAT-ACAAGTTAGAGACTATAGAAGAGGTGAAAAA-TTTGAAAATTTGTTCGATCCTGCTAGCATTTGAAttgtgtgcgcttctaggcgtgtcggtcttttcataattttgggcattttaccgatgctccaaccggttgtgtttagcagttcaccaaacgttcaccggtctattttattgttttttttggcatgcaagaaggtctaatacttcatacaagttagagactatagaagaggtgaaaaatttgaaaatttgttcgatcctgctagcatttgaagca
gi|10 : accgtggttaacaaaccgttagctattggagagtcggctaaaaagaaagcgggagtcggcattcacgcgcaggggagagtcgaaaatcctcgcttcgattttcagcgaaaggtaggtcacggttttctttttgcttgcatttttgtatcgcatttactttttacataaatggtgctcaatgcgcagcggaaggcaataggaataactaaggtaacatcatacatatatggcagtttgcctggaatttgaccttttagtttctcaaacacttcaacaggcaatttgcaaaatagaaattttttttgtaagtggtcgaccgacaaaaaaagcattacaattagcgaaataattacagcaagaaaacttaaaagtcagacagcatcccaaatgtatgtatttttgttgttcttcattgtttaaacgcccagtaatttgaatacatcatttgaggagtgctgttggtcgatttttgtccaacatttggcgtaaggtaacgcaggggagtcgattttcgttagaaaattcaaacagggggagtcgcaaaataaatgttgtctACCGTG--TA-CAC-CAATTG-CTTT-------------------------AAAGAACGGG-GGAATCG-CTTTTAAC-GC-CAGAGG-GAGTCGGAAATCCTT-G-----CTTCGA-ATTCGGCCGGAAAGAAGGCCTACATGTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTACAA--C-CA-TTACTT--TT---ACAA-AAAA-TA--------T---GC-------CACA-CGG-AA--CAATACG-ATAATCAAGGT-ACAT---T----TTACA--------TTCA--TC---A---GCAGGTTGCCTGGA--TTAACCCTC-------TCTAGTATGGTTTAATACAGCATTGGA---CA--Cgca
gi|11 : TTTTAATTGTT-CTTCATTGT-------T-C-AACACTCAGA-ATTTGG-AAGATA-C-TCGCTT---ACAGAA--TAT-ATT---GGG-TCG-A--TAAGTAT-CAAAT-TT--TAA-AAAGTAATGGAG-GGATGGAGGG------GGGTC-GAATTTC-GGTG-AAGATtgctctcatatttggaaaaaaggc
gi|12 : atcgaaaagttttattaatACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CATTCAAC-GC-CAGGGA-GAGTCGAATATCCTC-T-----CTTCGA-TTTCAGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATAGG-ATAACTAAGGT-ACATATACAATGT---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------Tgatatgttatagcatgttgacaagggtacggatttgatatttgttgacatgtcgcatatgggtgtcactctatttctgaaa
gi|13 : --TTGTAA--C-TA-ATAATT--GC---AGAA-TTAC-TT--------T---AT-------TACA-TGG-CA--CAATGTA-ATAACTAAGG--GCAT---T----T---A--------C--A--TT---G---GCAATTTTGCAGGC--TTTATC--A-------T---GTATGCTCAAACAC----ATGGAATCTA--C--TTTGCAGATTTCAAA-A--ATGTTACCTG-GT-A-CTAAG--GCAG-TGACAGAAA---CA--TTTC-A--T----TGAAGATATTTAC-t
gi|14 : GG---CA--AAATTTGCAGAAT--GGA-A--C-ATT---TT--C-G-GT--GTCTCGG-TAACGAAAA---GATGTTATGG--T-CA-TAGA-ATAATTAC-ACAGCAAAACTTGATAGT-----------AT-TA-AAAT------TACTT----------TTCATTGT-------TAC-AACACTCAGG-ATAAGGAAAAATA-C-TCGTTT---ACGGAA--TAC-A-TG--CGA-TCG-A--ata
gi|15 : GGT----------GAGTTG-C-AAAAAGAATTGGTGGAGTCA-CTTTTAACTAC-T--GGG-AAGTCGGAATTTCTTTG-----CTTGGA-TT--GAC---AAAG-----------ATAG-TCA-TGGTTTTTT-----CTGGCA--TAATTATAG--C-TA-TTACTTGCTTG--ACAATGTGA-TG--------
gi|16 : ----------GAGTTG-C-AAAAAGAATTGGTGGAGTCA-CTTTTAAC-AC-TGGTGG-AAGTCGAATTTCTTT-G-----CTTGGA-AATTGAC-A-AAAG-----------ATAGGTCA-TGGTTTTTT-----CTGGCA--T--ATATATAGC-TA-TTACT------------------TG--------T------------------GG-AA--CAATGTG-ATAACTaactagataac
gi|17 : tGT--TT---TGC----G----TTTACCGAC-ATCCAATTG-TTTGT-GTTCAC-AG-TTCACCAAA-CGTTCACCG-----AT---TGTT----T-ATAGG-TTT---CATTCT-CAAAA--GTCC-T--CA-TTCAT-ACAAGT-AGAGACTACT----------AGAGAAGTGAAAAT
gi|18 : tgtgttcataATAC----TTCGA---CA--CAATTTGCAAAAT--AGAGA--CT-TT---TA-GC-A-GT--G--TCGA-TGTCAAAAA---CA--TTAC-T--T-TA-TGAA-ATAATTAC-GAATGAAAACTAAACATT-AG--AAC---AT-CC-AAATGTATCATATTTTgaa
gi|19 : -CTTTGGGA----------GAGTCT-CTAAAAAGAACGGG-GAAGTCG-GTTTCAAC-AC-CAGGGG-G----GGGGGTCCTC-G-----CTTCGA-TTTCGGCCG-GAAG-----------GTAAGTCA-CTGTTTTTT-----CTTGCA--T--TTATAG--C-CA-TTgt
gi|2 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CATTCAAC-GC-CAGGGC-GAGTCGGAAATCTTC-G-----CTTCGA-TTTCAGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATAGG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TTTAGTATTCTCAAACAC----TTCGA---CA--CAATTTGAAAAAT--AGA-A--TTATT---TT-GT-A-GT--G--TCGA-CGACAAAAA---CA--TTAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAT---AT-CCAAAATGTACCGTATGTTGGTTGTTCCTTCATTGT-------T-T-TACGCCCAGT-ATTTGG-AAAATAGC-TCATTTTGCACGGGAACTGC-A-T---TGG-TCGCACCTTTTTGT-CAACACTC--GCA-ACGG-AACGCAG-G------GGG------GAGTC-GACTTTC-GTAA-AAGATGCTACA-A-C--AGGGAGTCG-CAACAAAAC-AA-TGTTATGCTCATT-CATTTCAAATGTCGTACAGTT---------CCCTGAAACGATATTACTTT--GCAA-TCTT-TGTGCGCT-CTTA-CGCTTGTTGTCACT--GTCTTTT-AT--TT---GACTTG-A----TTTACCGAT-CTCCAACCGCTTTGTCGTTCAC-AGCTTCACCAAACCGTTCA-CGGTC-TAT---TGTT---A--GTTTG-TTTTG-CA---T-CAAAA--GT-CTTAATA-TTCAT-ACAAGG-AGAGACTA------------AAAG-TTTG---------TCAATCATGCTA-CATTTGAA
gi|20 : -TCG-A--TTCGTGT-CAACG-TT--ACA-AAAGTAACGTA--G------GGG------GAGTC-TTTTATC-G-GC-AAGATT---CAGA-TTGGAGGAGTC----ACAAAAT-AATTGCTG---ACATT-CATCT-AAATGTcac
gi|22 : ACCGAG--TA-CAA-CCGTT---CTTGGGG----------G---CG-CTAAAAAGAAC-GG-AGAGTCG-CTTTC-AC-GC-CAttgatat
gi|23 : cTTGTTGTT-CTTCATTGT-------T-T-AACGGCCAAT-ATTTGG-
gi|24 : ATCGTG--TA-CAA-CCATTA-CTTTGGGA----------GAGTCG-C
gi|25 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------G
gi|26 : cccACCGTG--TA-CAA-CCGTTA-CTTTGGG
gi|27 : tacACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------
gi|3 : cA-CAA-CCGTTA-ACTTGGGA----------GAGTCG-CTGCAAAGAACGGG-GAGGTCG-CATTCAAC-GC-AAGGGA-GAGTCGAAAATCCTC-GG----CTTCGA-TTCAGGCCG-AAAG-----------GTAG-TCATCGCTTTGTT-----CTTGCA--T--TTGCAT--C-CA-TTACTT--TT---ACAA-ATGAATG--------T---AT-------CGCA-AGGGAA--CAATAGG-ATAACTAAGGT-ACAT---A----T---A--------T--A--TA---G---GCAGTTTGGACGGG--TTGAC---T-------TCTAATATGGTCATACA-----TTCGA---CAA-CAATTTGCAAAAT--AAA-G----ATT---TT-GC-A-GT--G--TCGA-TGAC-AAAA---CA--TTAC-A--T-TA-TG-A-ATAATTAC-GCAAG-AAACTTGAAAGT-----GAC---AT-CC-AAATGAATCATATTTT-GTTGTT-TTTCATTG--------T-T-AACG-CCGGT-ATTTGG--AAATA-C-TCATTT---GCGGGA--TGC-A-T---GGG-TCG-A--TTCT--T-TAAGA--T--G-A-AAGGTAACGCA--G------GGG------GAGTC-GATTTTCGGTTA-AAGATT---CAGACC--AGGGGGTAGTCGGCAAAATAAA-TGTTG---TCATTGCA-TT-AAATGTGGTACATT-----------TCTGAAACGATCTTAATTT----AATTTTT-TGTGCGCT-CTC--CG--TG------TGTCCTCTTTTCATAGTT-----CTTG-GGC--TTTACTGAT-CTCCAACCGC-TTGT-GTTCAG-AG-TTGACCAAAGCGTTC-CGGGTC-CGTTTATGTTTCAATCGTTTGTTTTTA-CA---T-CAAAA--GT-CGTAA-G-TTCATCACAAGC-AGAGACTA------------ATAG-
gi|4 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTTG-CTAAAAAGAACG-----------CATTCAAC-GC-CAGGGG-GAGTCGGAAATCC-C-GGCCCTCTTCAA-TTTCAGCCG-AAAG-----------GTAGGTCA-CG-TTTTCT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------AACA-CGG-AA--CAATATG-ATAACTAAGGT-ACAT---C----T---T--------T--T--AA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCAA---CA--CCATTTGCAAAAT--AGA-A----AAT---TT-GC-A-GT--G--TCAA-TGACAAAAA---CA--TTAC-G--T-TG-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGC-AG--AAC---AT-CC-AAATGTATCATATT----TAGTT-CTTCATTGT-------T-T-AACACCCAGT-ATTTGG-AAAATA-C-TCATTT---GCAGAA--TGC-A-T---GGGATCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAA-G------GGGGTGGGTGGGTC-GATTTTC-ATTA-AAGATTC-AGACA-G--GGGGAGTCG----CAAAAT-AATTGTTG---TCATT-CATTT-ATAGGT-GTACAGTCCTTGATTGACCCTGAAACAATCCTACTTTTGACAATTTTTGTGTGTGCT-CT---C---TG------TGT-GTCCTCT-GT--TCATAGATTTACA----TTTACCGAT-CTCCAACCGC-TTGT-GCTCAG-AA-TTCAACAAG-CGTTCACCGGTCACAT---
gi|5 : CCATG--CA-TAA-CCGTTA-TTTGGGGGAGTCTGCCACGAGTCA-CTAATAAGGACGAG-GGAGTCA-CATCTAAT-GC-CAGGGG--AGTC---AATCTCC-G-----CTTGGA-ATTCGGCAG-GAAA-----------GTAGGTTA-CCATTTTTT-----TTTTTA--T--TTCTAT--C-CA-AAACTT--TT---ACAA-AAGA-CA--------T---ATAAATTATTGCA-CGG-AA--CAATATG-ACTACCAAGGT-GCGT---C----T---A--------C--A--TC---A---GCAGTTTGTCTGGA--TTAACC--T-------TTTAGTATTGTCAAACAC----TTTGG---CA--CAATATGCAGAAT--GGA-A--C-ATT---TTCGC-T-AT--G--TCAG-TAACAAAAA---CA--TTGC-A--C-AA-TAGA-ATAATTAA-ACAGCAAAA---ACAGAT-AG--CATGTAAT-TC-AAAGGTTTTGT-TTTTCATTGCT-TTTCATTGT-------T-T-AACACTCAGG-ATGTGG-AAAATA-C-TCATTT---ACGGAA--TGC-A-TG--CGG-TTG-A--TATGTGT-CAACA-TT--GCA-AATGCAA--CAGAG------GGG------GAGTC-CAATTTC-GGTA-AAGAATC-AGACA-G--GAGGAGTaggtttcaatcttttgttgtg
gi|6 : --TA-CAA-CCGTTA-CTTTGGGA----------TACTCG-CTAAAAAGAACGGG-AGAGTCG-CTTTCAAC-AC-CAGGGG-GTGTCGGAAATTCTT-G-----CTTCGA-ATTCAACCG-AAAG-----------GTAGCTCA-GGCTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---AC-A-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATATG-ATAACTAAGGT-ACAG---G----T---A--------T--A--TA--------CAGTTTGCCGGGA--TTGACC--T-------TCTAGTATGGTCAAGCAC----TTCGA---CA--CAATTTGCAAAAT--AGA-A--A-ATT---TTCGC-A-GT--G--TCGA-TGACAAAAA---CA--TTAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACT-------------------T-CC-CAATGAATCATATTTT-GTTGTT-TTTCATTGT-------T-T-AACGCCCAGT-ATTGGG-AAAATA-C-TCATTT---GCGGGA--TGC-ATT---TGG-TCG-A--TTCTTGT-CAACA-TA--GAA-AATGTAACGCA--G------GGG------GAGTC-GATTTTC-GTTA-AAGta
gi|7 : GTCG-CATTCAAC-GC-CAGGGA-GAGTCGGAAATTCTC-G-----CTTCGA-TTCCCGCCA-AAAG-----------GTAGGTAA-CTTTTTTTT-----CTTGTA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CACA-CGG-AA--TAATATG-ATAATTAAGGT-ACAT---T----T---ACAGATGTAT--A--TA---G---GCAGTTTGTCGGGA--TTAACC--T-------TCTAGTATGGTCAAACAC----TTCGG---CA--CAATTTGCAAAAT--AGA-A--AAGTT---TC-AC-A-GT--T--TCGA-TGACAAAAA---CA--TTAC-A--T-TA-TGAA-ATAATTAT-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGAATCATATTTT-GTTGTT-TTTCATTGT-------T-T-AACGTCCAGT-ATTTGG-AAAATA-C-TAATTA---GCGGAA--TGC-A-TGGGGGG-TCA-A--TTTTTTT-CAACA-TT--GCA-AAGGTAATGCAG-G------GGG------GAGTC-AATTTTC---------ATT---CAGA-C--GGGGAGTCG-CAA
gi|8 : GCA-CGG-AA--CAATACA-ATGGCCAAGGA-ACAT---C----T---G--------T--ACATA---ACATGCAGTTTGCCTGGA--TCAACC--C-------CCAAGCGTGGTCAAACAC----TTCGG---CA--CCATTTGCAGTAT--GGA-A--CCTTT---TA-GCTATAT--G--TCGG-TGACAAAAA---TA--TTGC-A--T-TA-CAAA-ATAATTAC-GCAGCAAAACCAGATAGT-AA------------------GTAT----TTTTCATTATT-CTTCATTGTTTTTAAAT-T-AACACCCAGA-ATTTGG-AAAATA-C-CTGTTT---ACGGAA--TGC-A-TG--AGG-TCT-A--TCCGTGT-CAACG-TT--GCA-AAAGTAACAGAG-G------GAG------GAGTCAAATTTCC-GT-A-AATATTC-AAATA-G--GAGGAGTC
gi|9 : AGAACGGA---------CTTT--AC-GC-CAGGAG-GATTCGATAATCTCC-G-----CTTGGA-AATCGACAG-CAAA-----------GTAGGTTA-CCATTTTGT-----CTTGCC--T--CTCTAA--C-CA-TTACTT--TT---GCAA-AAGA-TATATAGGCCT---AT-------CACA-CGG-AA--CAATAAG-ATAACTAAGGTAACAT---C----T---A--------C--A--TC---A---GCAGTTTGTCTGGA--TTAACC--TTTTTAAATTTAGTATAGCCAAACAC----TTCGA---AA--CCATTCGAAAAA---AAA-A----------TT-GC-A--T--G-------TGAAAAAAG---CA--ATAT-AGGTGTA-TCAA-ATTATTag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AGAATTATACAAGCATACCTCATTTGCAGGGGATCGCAACATGGTAACAAGATCGGGGGG
Alignments
lowQualScore : 111111111111
lowQualScore : 1111111111 11111 11111111111 11111111 1111111 111111111111111111111111111111111111 1111111111 2222222 1 11 11111 22222222222 1111111 11111 111111111 111111 111 2222 1111 111 1 2 6666666666 333 1 1 22222222 5555555 555555555555555 11 1 33333333333 11111 11 1 2222222 1 11 000000000000 111111111 1
lowQualScore : 44 3 3 2 1111111111 3 1 6 2 1 2 2 3 3 00000 44 1 3 44444444444 3 2 77777 44 33 33 2 2 44 888 3 3 11111111 555 4444444 3 3 44 1 3 6 999999999999999999999999999999999999 44 1111111111 0 7777 555 77 1 44 3 3333333 0 11 3 11111 44 3 555 44 6666 3 3 3 3 3 1 33333333333 3 3 0 66 55 3 3 666 3 1111111 3 3 33 3 4 4 55 777 4 44444 3 55 0 4 4 55 4 999999999 111111 4 777777 5 2 111 6666 7777 444 8 3 0 0 5555555555 000 3 0 0 66666666 4444444 777777777777777 8 55 0 8 8 8 6 0 99 55555555555 44 0 8 88 88888 33 0 3333333 0 00 333333333333 7 444444444 1 5
lowQualScore : .. . . . .......... . . . . . . . . . ..... .. . . ........... . . ..... .. .. .. . . .. ... . . ........ ... ....... . . .. . . . .................................... .. .......... . .... ... .. . .. . ....... . .. . ..... .. . ... .. .... . . . . . . ........... . . . .. .. . . ... . ....... . . .. . . . .. ... . ..... . .. . . . .. . ......... ...... . ...... . . ... .... .... ... . . . . .......... ... . . . ........ ....... ............... . .. . . . . . . .. ........... .. . . .. ..... .. . ....... . .. ............ . ......... . .
lowQualScore : 66 1 1 9 7777777777 1 2 2 9 0 9 9 1 1 88888 11 5 1 66666666666 1 1 77777 22 99 99 9 9 22 555 1 1 22222222 888 2222222 1 1 22 0 1 7 666666666666666666666666666666666666 66 1111111111 4 1111 444 33 1 66 3 1111111 0 22 3 77777 66 3 888 66 9999 3 3 3 6 5 0 22222222222 6 6 3 77 00 6 6 222 6 8888888 6 6 77 6 0 0 22 000 0 44444 6 00 6 0 0 55 0 666666666 555555 0 444444 0 8 999 8888 8888 000 0 2 0 0 3333333333 333 2 0 0 88888888 0000000 444444444444444 0 66 8 0 0 0 0 8 44 88888888888 00 8 0 88 55555 88 0 0000000 0 88 777777777777 3 888888888 0 0
consensus : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCAAC-GC-CAGGGG-GAGTCGGAAATCCTC-G-----CTTCGA-TTTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATANG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCGA---CA--CAATTTGCAAAAT--AGA-A-NA----TTTT-GC--A-GT-----G--TCGA-TGACAAAAA---CA--TTAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGTATCGT--A-T-TTT--GTTGTT-CTTCATTGT-------T-T-AACGCCCAGT-ATTTGG-AAAATA-C-TCG-TTTGC---GGAA-TGCAT--G-NGGTCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAG-G------GGG------GAGTC-GATTTTC-GTTA-AAGATTC-AGACAGGGGGAGTCG-CGACAAAATAAATTGTTG---TCATT-CATTT-AAATGT-GTACAGTC---------CCCTGAAACGATCTTACTTT--GCAATTTTT-TGTGCGCT-CTCCG-CG--TGTCG-----NTCTTTTCATA-TTGACTTGGGCA-TTTACCGAT-CTCCAACCGCTTTGT-GTTCAG-AG-TTCACCAAA-CGTTCACCGGTC-CAT---TG-TTTCAATCGTTTG-TTTT-GCA---T-CA--AAAGT-C-TAATA-TTCAT-ACAAG-TAGAGACTAC-GGA-------AAAGTTTGAAAATTTGTTCGATCNTGCTAGCATTTGAA
Reference ( family-1066 ) : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCAAC-GC-CAGGGG-GAGTCGGAAATCCTC-G-----CTTCGA-TTTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATANG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCGA---CA--CAATTTGCAAAAT--AGA-A-CA----TTTT-GC--A-GT-----G--TCGA-TGACAAAAA---CA--TTAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGTATCGT--A-T-TTT--GTTGTT-CTTCATTGT-------T-T-AACGCCCAGT-ATTTGG-AAAATA-C-TCG-TTTGC---GGAA-TGCAT--G-NGGTCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAG-G------GGG------GAGTC-GATTTTC-GTTA-AAGATTC-ANANACGGGGAGTCG-CGACAAAATAAATTGTTG---TCATT-CATTT-AAATGT-GTACAGTC---------CCCTGAAACGATCTTACTTT--GCAATTTTT-TGTGCGCT-CT-NG-CG--TGTCG----TGTCTTTTCATA-TTGACTTGGGC--TTTACCGAT-CTCCAACCGCTTTGT-GTTCAG-AG-TTCACCAAA-CGTTCACCGGTC-CAT---TG-TT---ATCGTTTG-TTTT-GCA---T-CA--AAAGT-C-TAATA-TTCAT-ACAAG-TAGAGACTAC-----------AAAGTTTGAAAATTTGTTCGATCNTGCTAGCATTTGAA
gi|1 : ACCGTGGTTAACAAACCGTTAGCTATTGGA----------GAGTCGGCTAAAAAGAAAGCG-GGAGTCGGCATTCA-C-GCGCAGGGGAGAGTCGAAAATCCTC-G-----CTTCGATTTTCAG-CG-AAAG-----------GTAGGTCA-CGGTTTTCTTTTTGCTTGCATTT--TTGTAT--CGCATTTACTT--TTTACATAA-ATGG-TG--------CTCAATG------CGCAGCGG-AAGGCAATAGGAATAACTAAGGTAACAT---CA---T---A--------C--A--TATATG---GCAGTTTGCCTGGAATTTGACC--T-------TTTAGT-TTCTCAAACAC----TTCAA---CAGGCAATTTGCAAAAT--AGA-A--ATTTTTTTT-GTA-A-GTG----G--TCGACCGACAAAAAAAGCA--TTACAA--T-TAGCGAA-ATAATTACAGCAAGAAAACTTAAAAGTCAGACAGC---ATCCC-AAATGTAT-GT--ATT-TTT--GTTGTT-CTTCATTGT-------T-TAAACGCCCAGTAATTTG----AATA-CATCA-TTTGA---GGAG-TGC-T--GTTGGTCG-A--TTTTTGTCCAACA-TTTGGCGTAAGGTAACGCA---------GGG------GAGTC-GATTTTC-GTTAGAAAATTC-AAACAGGGGGAGTCG----CAAAATAAA-TGTTG---TCTTT-
gi|1 : TTTTG-TGTGCGCTTCT-AGGCG--TGTCG-----GTCTTTTCATAATT---TTGGGCATTTTACCGATGCTCCAACCGGTT-GT-GTTTAGCAG-TTCACCAAA-CGTTCACCGGTC-TAT---T--TT---ATTGTTTT-TTTTGGCA---TGCAAGAAGGT-C-TAATACTTCAT-ACAAGTTAGAGACTATAGAAGAGGTGAAAAATTTGAAAATTTGTTCGATCCTGCTAGCATTTGAAttgtgtgcgcttctaggcgtgtcggtcttttcataattttgggcattttaccgatgctccaaccggttgtgtttagcagttcaccaaacgttcaccggtctattttattgttttttttggcatgcaagaaggtctaatacttcatacaagttagagactatagaagaggtgaaaaatttgaaaatttgttcgatcctgctagcatttgaagca
gi|10 : accgtggttaacaaaccgttagctattggagagtcggctaaaaagaaagcgggagtcggcattcacgcgcaggggagagtcgaaaatcctcgcttcgattttcagcgaaaggtaggtcacggttttctttttgcttgcatttttgtatcgcatttactttttacataaatggtgctcaatgcgcagcggaaggcaataggaataactaaggtaacatcatacatatatggcagtttgcctggaatttgaccttttagtttctcaaacacttcaacaggcaatttgcaaaatagaaattttttttgtaagtggtcgaccgacaaaaaaagcattacaattagcgaaataattacagcaagaaaacttaaaagtcagacagcatcccaaatgtatgtatttttgttgttcttcattgtttaaacgcccagtaatttgaatacatcatttgaggagtgctgttggtcgatttttgtccaacatttggcgtaaggtaacgcaggggagtcgattttcgttagaaaattcaaacagggggagtcgcaaaataaatgttgtctACCGTG--TA-CAC-CAATTG-CTTT-------------------------AAAGAACGGG-GGAATCG-CTTTTAAC-GC-CAGAGG-GAGTCGGAAATCCTT-G-----CTTCGA-ATTCGGCCGGAAAGAAGGCCTACATGTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTACAA--C-CA-TTACTT--TT---ACAA-AAAA-TA--------T---GC-------CACA-CGG-AA--CAATACG-ATAATCAAGGT-ACAT---T----TTACA--------TTCA--TC---A---GCAGGTTGCCTGGA--TTAACCCTC-------TCTAGTATGGTTTAATACAGCATTGGA---CA--Cgca
gi|11 : ---AT-CG-AAAAGTTTTATTAA-T-TTTTAATTGTT-CTTCATTGT-------T-C-AACACTCAGA-ATTTGG-AAGATA-C-TCG-CTTAC---AGAA-TATAT--T-GGGTCG-A--TAAGTAT-CAAAT-TT--TAA-AAAGTAATGGAG-GGATGGAGGG------GGGTC-GAATTTC-GGTG-AAGATtgctctcatatttggaaaaaaggc
gi|12 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CATTCAAC-GC-CAGGGA-GAGTCGAATATCCTC-T-----CTTCGA-TTTCAGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATAGG-ATAACTAAGGT-ACATATACAATGT---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------Tgatatgttatagcatgttgacaagggtacggatttgatatttgttgacatgtcgcatatgggtgtcactctatttctgaaa
gi|13 : --TTGTAA--C-TA-ATAATT--GC---AGAA-TTAC-TT--------T---AT-------TACA-TGG-CA--CAATGTA-ATAACTAAGG--GCAT---T----T---A--------C--A--TT---G---GCAATTTTGCAGGC--TTTATC--A-------T---GTATGCTCAAACAC----ATGGAATCTA--C--TTTGCAGATTTCAAA-A--A----TGTT-ACCTG-GTACTAAG--GCAG-TGACAGAAA---CA--TTTC-A--T----TGAAGATATTTAC-t
gi|14 : GG---CA--AAATTTGCAGAAT--GGA-A-CA----TTTT--C--G-GT-----GTCTCGG-TAACGAAAA---GATGTTATGG--T-CA-TAGA-ATAATTAC-ACAGCAAAACTTGATAGT-----------AT-TA-AAAT------T--A-C-TT-----------TTCATTGT-------TAC-AACACTCAGG-ATAAGGAAAAATA-C-TCG-TTTAC---GGAA-TACAT--G-CGATCG-A--ata
gi|15 : GGT----------GAGTTG-C-AAAAAGAATTGGTGGAGTCA-CTTTTAACTAC-T--GGG-AAGTCGGAATTTCTTTG-----CTTGGA-TT--GAC---AAAG-----------ATAG-TCA-TGGTTTTTT-----CTGGCA--TAATTATAG--C-TA-TTACTTGCTTG--ACAATGTGA-TG--------
gi|16 : ----------GAGTTG-C-AAAAAGAATTGGTGGAGTCA-CTTTTAAC-AC-TGGTGG-AAGTCGAATTTCTTT-G-----CTTGGA-AATTGAC-A-AAAG-----------ATAGGTCA-TGGTTTTTT-----CTGGCA--T--ATATATAGC-TA-TTACT------------------TG--------T------------------GG-AA--CAATGTG-ATAACTaactagataac
gi|17 : tTTCATA-GT--TTTGCG---TTTACCGAC-ATCCAATTG-TTTGT-GTTCAC-AG-TTCACCAAA-CGTTCACCG-----AT---TGTTT---ATAG---G-TTT---CATTCT-CA--AAAGTCC-T--CA-TTCAT-ACAAG-TAGAGACTACTAGA-------GAAG--TGAAAAT
gi|18 : tgtgATAC----TTCGA---CA--CAATTTGCAAAAT--AGAGA-CT----TTTA-GC--A-GT-----G--TCGA-TGTCAAAAA---CA--TTAC-T--T-TA-TGAA-ATAATTAC-GAATGAAAACTAAACATT-AG--AAC---AT-CC-AAATGTATCAT--A-T-TTT--GTgaa
gi|19 : -CTTTGGGA----------GAGTCT-CTAAAAAGAACGGG-GAAGTCG-GTTTCAAC-AC-CAGGGG-G----GGGGGTCCTC-G-----CTTCGA-TTTCGGCCG-GAAG-----------GTAAGTCA-CTGTTTTTT-----CTTGCA--T--TTATAG--C-CA-TT
gi|2 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CATTCAAC-GC-CAGGGC-GAGTCGGAAATCTTC-G-----CTTCGA-TTTCAGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATAGG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TTTAGTATTCTCAAACAC----TTCGA---CA--CAATTTGAAAAAT--AGA-ATTA----TTTT-GT--A-GT-----G--TCGA-CGACAAAAA---CA--TTAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAT---AT-CCAAAATGTACCGT--A-TGTTG--GTTGTTCCTTCATTGT-------T-T-TACGCCCAGT-ATTTGG-AAAATAGC-TCATTTTGCACGGGAACTGCAT----TGGTCGCACCTTTTTGT-CAACACTC--GCA-ACGG-AACGCAG-G------GGG------GAGTC-GACTTTC-GTAA-AAGATGCTACA-ACAGGGAGTCG-CAACAAAACAA--TGTTATGCTCATT-CATTTCAAATGTCGTACAGTT---------CCCTGAAACGATATTACTTT--GCAA-TCTT-TGTGCGCT-CT-TA-CGCTTGTTGTCACTGTCTTTT-AT--TTGACTTGA----TTTACCGAT-CTCCAACCGCTTTGTCGTTCAC-AGCTTCACCAAACCGTTCA-CGGTC-TAT---TG-TT---A--GTTTG-TTTT-GCA---T-CA--AAAGT-CTTAATA-TTCAT-ACAAG-GAGAGACTA------------AAAGTTTG---------TCAATCATGCTA-CATTTGAA
gi|20 : TCG-A--TTCGTGT-CAACG-TT--ACA-AAAGTAACGTA--G------GGG------GAGTC-TTTTATC-GGC--AAGATTC-AGATTGGAGGAGTC----ACAAAAT-AATTGCTG---ACATT-CATCT-AAATGT-cac
gi|22 : ACCGAG--TA-CAA-CCGTT---CTTGGGG----------G---CG-CTAAAAAGAAC-GG-AGAGTCG-CTTTC-AC-GC-CAttgatat
gi|23 : cTT--GTTGTT-CTTCATTGT-------T-T-AACGGCCAAT-ATTTGG-
gi|24 : ATCGTG--TA-CAA-CCATTA-CTTTGGGA----------GAGTCG-C
gi|25 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------G
gi|26 : cccACCGTG--TA-CAA-CCGTTA-CTTTGGG
gi|27 : tacACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------
gi|3 : cA-CAA-CCGTTA-ACTTGGGA----------GAGTCG-CTGCAAAGAACGGG-GAGGTCG-CATTCAAC-GC-AAGGGA-GAGTCGAAAATCCTC-GG----CTTCGA-TTCAGGCCG-AAAG-----------GTAG-TCATCGCTTTGTT-----CTTGCA--T--TTGCAT--C-CA-TTACTT--TT---ACAA-ATGAATG--------T---AT-------CGCA-AGGGAA--CAATAGG-ATAACTAAGGT-ACAT---A----T---A--------T--A--TA---G---GCAGTTTGGACGGG--TTGAC---T-------TCTAATATGGTCATACA-----TTCGA---CAA-CAATTTGCAAAAT--A-A-A-GA----TTTT-GC--A-GT-----G--TCGA-TGACAAAA----CA--TTAC-A--T-TA-TG-A-ATAATTAC-GCAAG-AAACTTGAAAGT-----GAC---AT-CC-AAATGAATCAT--A-T-TTT--GTTGTT-TTTCATTG--------T-T-AACG-CCGGT-ATTTGG--AAATA-C-TCA-TTTGC---GGGA-TGCAT--G--GGTCG-A--TTCT--T-TAAGA--T--G-A-AAGGTAACGCA--G------GGG------GAGTC-GATTTTCGGTTA-AAGATTC-AGAC-CAGGGGGTAGTCGGCAAAATAAA-TGTTG---TCATTGCA-TT-AAATGTGGTACATT-----------TCTGAAACGATCTTAATTT----AATTTTT-TGTGCGCT-CTCCG-TG--TGTC------CTCTTTTCATAGTT--CTTGGGC--TTTACTGAT-CTCCAACCGC-TTGT-GTTCAG-AG-TTGACCAAAGCGTTC-CGGGTC-CGTTTATG-TTTCAATCGTTTGTTTTT-ACA---T-CA--AAAGT-CGTAA-G-TTCATCACAAG-CAGAGACTA
gi|4 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTTG-CTAAAAAGAACG-----------CATTCAAC-GC-CAGGGG-GAGTCGGAAATCC-C-GGCCCTCTTCAA-TTTCAGCCG-AAAG-----------GTAGGTCA-CG-TTTTCT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------AACA-CGG-AA--CAATATG-ATAACTAAGGT-ACAT---C----T---T--------T--T--AA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCAA---CA--CCATTTGCAAAAT--AGA-A-AA-----TTT-GC--A-GT-----G--TCAA-TGACAAAAA---CA--TTAC-G--T-TG-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGC-AG--AAC---AT-CC-AAATGTATCAT--A-T-T-----TAGTT-CTTCATTGT-------T-T-AACACCCAGT-ATTTGG-AAAATA-C-TCA-TTTGC---AGAA-TGCAT--G-GGATCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAA-G------GGGGTGGGTGGGTC-GATTTTC-ATTA-AAGATTC-AGACAGGGGGAGTCG----CAAAAT-AATTGTTG---TCATT-CATTT-ATAGGT-GTACAGTCCTTGATTGACCCTGAAACAATCCTACTTTTGACAATTTTTGTGTGTGCT-CTCTG-TG--TGTC------CTCTGTTCATA---GATTT--ACA-TTTACCGAT-CTCCAACCGC-TTGT-GCTCAG-AA-TTCAACAAG-CGTTCACCGGTCACATA--GG-TTTCAATCTTTTG-TTGT-Gatag
gi|5 : CCATG--CA-TAA-CCGTTA-TTTGGGGGAGTCTGCCACGAGTCA-CTAATAAGGACGAG-GGAGTCA-CATCTAAT-GC-CAGGGG--AGTC---AATCTCC-G-----CTTGGA-ATTCGGCAG-GAAA-----------GTAGGTTA-CCATTTTTT-----TTTTTA--T--TTCTAT--C-CA-AAACTT--TT---ACAA-AAGA-CA--------T---ATAAATTATTGCA-CGG-AA--CAATATG-ACTACCAAGGT-GCGT---C----T---A--------C--A--TC---A---GCAGTTTGTCTGGA--TTAACC--T-------TTTAGTATTGTCAAACAC----TTTGG---CA--CAATATGCAGAAT--GGA-A-CA----TTTTCGC--T-AT-----G--TCAG-TAACAAAAA---CA--TTGC-A--C-AA-TAGA-ATAATTAA-ACAGCAAAA---ACAGAT-AG--CATGTAAT-TC-AAAGGTTTTGT--T-T-TTC--ATTGCT-TTTCATTGT-------T-T-AACACTCAGG-ATGTGG-AAAATA-C-TCA-TTTAC---GGAA-TGCAT--G-CGGTTG-A--TATGTGT-CAACA-TT--GCA-AATGCAA--CAGAG------GGG------GAGTC-CAATTTC-GGTA-AAGAATC-AGACAGGAGGAGT
gi|6 : --TA-CAA-CCGTTA-CTTTGGGA----------TACTCG-CTAAAAAGAACGGG-AGAGTCG-CTTTCAAC-AC-CAGGGG-GTGTCGGAAATTCTT-G-----CTTCGA-ATTCAACCG-AAAG-----------GTAGCTCA-GGCTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---AC-A-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATATG-ATAACTAAGGT-ACAG---G----T---A--------T--A--TA--------CAGTTTGCCGGGA--TTGACC--T-------TCTAGTATGGTCAAGCAC----TTCGA---CA--CAATTTGCAAAAT--AGA-A-AA----TTTTCGC--A-GT-----G--TCGA-TGACAAAAA---CA--TTAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACT-------------------T-CC-CAATGAATCAT--A-T-TTT--GTTGTT-TTTCATTGT-------T-T-AACGCCCAGT-ATTGGG-AAAATA-C-TCA-TTTGC---GGGA-TGCAT--T-TGGTCG-A--TTCTTGT-CAACA-TA--GAA-AATGTAACGCA--G------GGG------GAGTC-GATTTTC-GTTA-AAGta
gi|7 : GTCG-CATTCAAC-GC-CAGGGA-GAGTCGGAAATTCTC-G-----CTTCGA-TTCCCGCCA-AAAG-----------GTAGGTAA-CTTTTTTTT-----CTTGTA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CACA-CGG-AA--TAATATG-ATAATTAAGGT-ACAT---T----T---ACAGATGTAT--A--TA---G---GCAGTTTGTCGGGA--TTAACC--T-------TCTAGTATGGTCAAACAC----TTCGG---CA--CAATTTGCAAAAT--AGA-A-AAG---TTTC-AC--A-GT-----T--TCGA-TGACAAAAA---CA--TTAC-A--T-TA-TGAA-ATAATTAT-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGAATCAT--A-T-TTT--GTTGTT-TTTCATTGT-------T-T-AACGTCCAGT-ATTTGG-AAAATA-C-TAA-TTAGC---GGAA-TGCATGGG-GGGTCA-A--TTTTTTT-CAACA-TT--GCA-AAGGTAATGCAG-G------GGG------GAGTC-AATTTTC---------ATTC---AGACGGGGAGTCG-CAA
gi|8 : GCA-CGG-AA--CAATACA-ATGGCCAAGGA-ACAT---C----T---G--------T--ACATA---ACATGCAGTTTGCCTGGA--TCAACC--C-------CCAAGCGTGGTCAAACAC----TTCGG---CA--CCATTTGCAGTAT--GGA-A-CC----TTTTAGCT-ATAT-----G--TCGG-TGACAAAAA---TA--TTGC-A--T-TA-CAAA-ATAATTAC-GCAGCAAAACCAGATAGT-AA------------------GTATT------T-TTC--ATTATT-CTTCATTGTTTTTAAAT-T-AACACCCAGA-ATTTGG-AAAATA-C-CTG-TTTAC---GGAA-TGCAT--G-AGGTCT-A--TCCGTGT-CAACG-TT--GCA-AAAGTAACAGAG-G------GAG------GAGTCAAATTTCC-G-TA-AATATTC-AAATAGGAGGAGTC
gi|9 : AGAACGGA---------CTTT--AC-GC-CAGGAG-GATTCGATAATCTCC-G-----CTTGGA-AATCGACAG-CAAA-----------GTAGGTTA-CCATTTTGT-----CTTGCC--T--CTCTAA--C-CA-TTACTT--TT---GCAA-AAGA-TATATAGGCCT---AT-------CACA-CGG-AA--CAATAAG-ATAACTAAGGTAACAT---C----T---A--------C--A--TC---A---GCAGTTTGTCTGGA--TTAACC--TTTTTAAATTTAGTATAGCCAAACAC----TTCGA---AA--CCATTCGAAAAA---AAA-A---------TT-GC--A--T-----G-------TGAAAAAAG---CA--ATAT-AGGTGTA-TCAA-ATTATTag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AGAATTATACAAGCATACCTCATTTGCAGGGGATCGCAACATGGTAACAAGATCGGGGGG
Alignments
lowQualScore : 1111111111 11111 11111111111 11111111 1111111 111111111111111111111111111111111111 1111111111 111111 11111 11111 22222222222 1111111 11111 111111111 111111 2222 1111 111 1 2 6666666666 333 1 1 111 4444444 444444444444 11 1 222 1111 11111 11 1 2222222 1 11 2222 555555555 111111111 1
lowQualScore : 44 3 3 2 1111111111 3 1 6 2 1 2 2 3 3 00000 44 1 3 44444444444 3 2 77777 44 33 33 2 2 44 888 3 3 11111111 555 4444444 3 3 44 1 3 6 999999999999999999999999999999999999 44 1111111111 0 7777 555 77 1 3 000000 44444 3 11111 44 3 555 44 3 77 3 3 3 3 3 1 00000000000 3 3 0 66 55 3 3 444 3 1111111 3 3 33 4 4 4 55 777 4 44444 3 55 0 4 4 55 4 999999999 111111 4 777777 5 0 5 5 2222 7777 444 8 3 0 0 5555555555 000 3 0 0 000 1111111 555555555555 3 8 8 55 0 8 8 8 6 0 99 222 7777 3 0 8 0 8 88888 33 0 3333333 0 00 9999 555555555 444444444 1 5
lowQualScore : .. . . . .......... . . . . . . . . . ..... .. . . ........... . . ..... .. .. .. . . .. ... . . ........ ... ....... . . .. . . . .................................... .. .......... . .... ... .. . . ...... ..... . ..... .. . ... .. . .. . . . . . . ........... . . . .. .. . . ... . ....... . . .. . . . .. ... . ..... . .. . . . .. . ......... ...... . ...... . . . . .... .... ... . . . . .......... ... . . . ... ....... ............ . . . .. . . . . . . .. ... .... . . . . . ..... .. . ....... . .. .... ......... ......... . .
lowQualScore : 66 1 1 9 7777777777 1 2 2 9 0 9 9 1 1 88888 11 5 1 66666666666 1 1 77777 22 99 99 9 9 22 555 1 1 22222222 888 2222222 1 1 22 0 1 7 666666666666666666666666666666666666 66 1111111111 4 1111 444 33 1 3 777777 11111 3 77777 66 3 888 66 3 99 3 3 3 6 5 0 88888888888 6 6 3 77 00 6 6 888 6 8888888 6 6 77 0 0 0 22 000 0 44444 6 00 6 0 0 55 0 666666666 555555 0 444444 0 4 0 0 7777 8888 000 0 2 0 0 3333333333 333 2 0 0 555 0000000 222222222222 8 0 0 66 8 0 0 0 0 8 44 000 2222 2 8 0 8 0 55555 88 0 0000000 0 88 2222 777777777 888888888 0 0
consensus : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCAAC-GC-CAGGGG-GAGTCGGAAATCCTC-G-----CTTCGA-TTTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATANG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCGA---CA--CAATTTGCAAA-ATAGAA---NA-TTTT-GC--A-GT-----GTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGTATCGT--A-T-TTT--GTTGTT-CTTCATTGT-------T-T-AACGCCCAGT-ATTTGGAAAA-TA-C-TCG-TTTGC---GGAA-TGCAT--G-NGGTCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAG-G------GGG------GAGTC-GATTTTC-GTTA-AAGATTCAGA-CAG-GGGG-AGTCGCGACAAAATAAATTGTTG---TCATT-CATTT-AAATGT-GTACAGTC---------CCCTGAAACGATCTTACTTT--GCAATTTTT-TGTGCGCT-CTC-CGCGTGTCG-----NTCTTTTCATA-TTGACTTGGGCATTT-ACCGAT-CTCCAACCGCTTTGT-GTTCAG-AG-TTCACCAAA-CGTTCACCGGTC-CAT---TGTTTCAATCGTTTG-TTTTG-CA---T-CAAAA--GT-C-TAATA-TTCAT-ACAAGT-AGAGACTAC-AGAAAAG--------TTTGAAAATTTGTTCGATCNTGCTAGCATTTGAA
Reference ( family-1066 ) : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCAAC-GC-CAGGGG-GAGTCGGAAATCCTC-G-----CTTCGA-TTTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATANG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCGA---CA--CAATTTGCAAA-ATAGAA---NA-TTTT-GC--A-GT-----GTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGTATCGT--A-T-TTT--GTTGTT-CTTCATTGT-------T-T-AACGCCCAGT-ATTTGGAAAA-TA-C-TCG-TTTGC---GGAA-TGCAT--G-NGGTCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAG-G------GGG------GAGTC-GATTTTC-GTTA-AAGATTCAGA-CAG-GGGG-AGTCGCGACAAAATAAATTGTTG---TCATT-CATTT-AAATGT-GTACAGTC---------CCCTGAAACGATCTTACTTT--GCAATTTTT-TGTGCGCT-CTC-CGCGTGTCG-----NTCTTTTCATA-TTGACTTGGGCATTT-ACCGAT-CTCCAACCGCTTTGT-GTTCAG-AG-TTCACCAAA-CGTTCACCGGTC-CAT---TGTTTCAATCGTTTG-TTTTG-CA---T-CAAAA--GT-C-TAATA-TTCAT-ACAAGT-AGAGACTAC-GGAAAAG--------TTTGAAAATTTGTTCGATCNTGCTAGCATTTGAA
gi|1 : ACCGTGGTTAACAAACCGTTAGCTATTGGA----------GAGTCGGCTAAAAAGAAAGCG-GGAGTCGGCATTCA-C-GCGCAGGGGAGAGTCGAAAATCCTC-G-----CTTCGATTTTCAG-CG-AAAG-----------GTAGGTCA-CGGTTTTCTTTTTGCTTGCATTT--TTGTAT--CGCATTTACTT--TTTACATAA-ATGG-TG--------CTCAATG------CGCAGCGG-AAGGCAATAGGAATAACTAAGGTAACAT---CA---T---A--------C--A--TATATG---GCAGTTTGCCTGGAATTTGACC--T-------TTTAGT-TTCTCAAACAC----TTCAA---CAGGCAATTTGCAAA-ATAGAAATTTT-TTTT-GTA-A-GTG----GTC--GACCGACAAAAAAAGCAT--TACAA--T-TAGCGAA-ATAATTACAGCAAGAAAACTTAAAAGTCAGACAGC---ATCCC-AAATGTAT-GT--ATT-TTT--GTTGTT-CTTCATTGT-------T-TAAACGCCCAGTAATTTG---AA-TA-CATCA-TTTGA---GGAG-TGC-T--GTTGGTCG-A--TTTTTGTCCAACA-TTTGGCGTAAGGTAACGCA---------GGG------GAGTC-GATTTTC-GTTAGAAAATTCAAA-CAG-GGGG-AGTCG---CAAAATAAA-TGTTG---TCTTT-
gi|1 : TTTTG-TGTGCGCTTCTA-GGCGTGTCG-----GTCTTTTCATAATT---TTGGGCATTTTACCGATGCTCCAACCGGTT-GT-GTTTAGCAG-TTCACCAAA-CGTTCACCGGTC-TAT---T--TT--ATTGTTTT-TTTTGGCA---TGCAAGAAGGT-C-TAATACTTCAT-ACAAGTTAGAGACTAT-AGAAGAGGTGAAAAATTTGAAAATTTGTTCGATCCTGCTAGCATTTGAAttgtgtgcgcttctaggcgtgtcggtcttttcataattttgggcattttaccgatgctccaaccggttgtgtttagcagttcaccaaacgttcaccggtctattttattgttttttttggcatgcaagaaggtctaatacttcatacaagttagagactatagaagaggtgaaaaatttgaaaatttgttcgatcctgctagcatttgaagca
gi|10 : accgtggttaacaaaccgttagctattggagagtcggctaaaaagaaagcgggagtcggcattcacgcgcaggggagagtcgaaaatcctcgcttcgattttcagcgaaaggtaggtcacggttttctttttgcttgcatttttgtatcgcatttactttttacataaatggtgctcaatgcgcagcggaaggcaataggaataactaaggtaacatcatacatatatggcagtttgcctggaatttgaccttttagtttctcaaacacttcaacaggcaatttgcaaaatagaaattttttttgtaagtggtcgaccgacaaaaaaagcattacaattagcgaaataattacagcaagaaaacttaaaagtcagacagcatcccaaatgtatgtatttttgttgttcttcattgtttaaacgcccagtaatttgaatacatcatttgaggagtgctgttggtcgatttttgtccaacatttggcgtaaggtaacgcaggggagtcgattttcgttagaaaattcaaacagggggagtcgcaaaataaatgttgtctACCGTG--TA-CAC-CAATTG-CTTT-------------------------AAAGAACGGG-GGAATCG-CTTTTAAC-GC-CAGAGG-GAGTCGGAAATCCTT-G-----CTTCGA-ATTCGGCCGGAAAGAAGGCCTACATGTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTACAA--C-CA-TTACTT--TT---ACAA-AAAA-TA--------T---GC-------CACA-CGG-AA--CAATACG-ATAATCAAGGT-ACAT---T----TTACA--------TTCA--TC---A---GCAGGTTGCCTGGA--TTAACCCTC-------TCTAGTATGGTTTAATACAGCATTGGA---CA--Cgca
gi|11 : ---AT-CG-AAAAGTTTTATTAA-T-TTTTAATTGTT-CTTCATTGT-------T-C-AACACTCAGA-ATTTGGAAGA-TA-C-TCG-CTTAC---AGAA-TATAT--T-GGGTCG-A--TAAGTAT-CAAAT-TT--TAA-AAAGTAATGGAG-GGATGGAGGG------GGGTC-GAATTTC-GGTG-AAGATtgctctcatatttggaaaaaaggc
gi|12 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CATTCAAC-GC-CAGGGA-GAGTCGAATATCCTC-T-----CTTCGA-TTTCAGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATAGG-ATAACTAAGGT-ACATATACAATGT---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------Tgatatgttatagcatgttgacaagggtacggatttgatatttgttgacatgtcgcatatgggtgtcactctatttctgaaa
gi|13 : --TTGTAA--C-TA-ATAATT--GC---AGAA-TTAC-TT--------T---AT-------TACA-TGG-CA--CAATGTA-ATAACTAAGG--GCAT---T----T---A--------C--A--TT---G---GCAATTTTGCAGGC--TTTATC--A-------T---GTATGCTCAAACAC----ATGGAATCTA--C--TTTGCAGATTTCAAA---AA-TGTT-ACCTG-GTACTAAGGC--AG-TGACAGAAA---CAT--TTC-A--T----TGAAGATATTTAC-t
gi|14 : GG---CA--AAATTTGCAGA-ATGGAA---CA-TTTT--C--G-GT-----GTCTCGG-TAACGAAAA---GATGTTAT-GG-T-CA-TAGA-ATAATTAC-ACAGCAAAACTTGATAGT-A----------T-TA-AAAT------T--A-C-TTT-----------TCATTGT-------TAC-AACACTCAGG-ATAAGGAAAAATA-C-TCG-TTTAC---GGAA-TACAT--G-CGATCG-A--ata
gi|15 : GGT----------GAGTTG-C-AAAAAGAATTGGTGGAGTCA-CTTTTAACTAC-T--GGG-AAGTCGGAATTTCTTTG-----CTTGGA-TT--GAC---AAAG-----------ATAG-TCA-TGGTTTTTT-----CTGGCA--TAATTATAG--C-TA-TTACTTGCTTG--ACAATGTGA-TG--------
gi|16 : ----------GAGTTG-C-AAAAAGAATTGGTGGAGTCA-CTTTTAAC-AC-TGGTGG-AAGTCGAATTTCTTT-G-----CTTGGA-AATTGAC-A-AAAG-----------ATAGGTCA-TGGTTTTTT-----CTGGCA--T--ATATATAGC-TA-TTACT------------------TG--------T------------------GG-AA--CAATGTG-ATAACTaactagataac
gi|17 : tTTCATA-GT--TTTG--CGTTT-ACCGAC-ATCCAATTG-TTTGT-GTTCAC-AG-TTCACCAAA-CGTTCACCG-----AT---TGTTT--ATAG---G-TTT---CATTCT-CAAAA--GTCC-T--CA-TTCAT-ACAAGT-AGAGACTACTAGAGAAG----------TGAAAAT
gi|18 : tgtgATAC----TTCGA---CA--CAATTTGCAAA-ATAGAG---AC-TTTTAGC--A-GT-----GTC--GA-TGTCAAAAA---CAT--TAC-T--T-TA-TGAA-ATAATTAC-GAATGAAAACTAAACATT-AG--AAC---AT-CC-AAATGTATCAT--A-T-TTT--GTgaa
gi|19 : -CTTTGGGA----------GAGTCT-CTAAAAAGAACGGG-GAAGTCG-GTTTCAAC-AC-CAGGGG-G----GGGGGTCCTC-G-----CTTCGA-TTTCGGCCG-GAAG-----------GTAAGTCA-CTGTTTTTT-----CTTGCA--T--TTATAG--C-CA-TT
gi|2 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CATTCAAC-GC-CAGGGC-GAGTCGGAAATCTTC-G-----CTTCGA-TTTCAGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATAGG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TTTAGTATTCTCAAACAC----TTCGA---CA--CAATTTGAAAA-ATAGAAT--TA-TTTT-GT--A-GT-----GTC--GA-CGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAT---AT-CCAAAATGTACCGT--A-TGTTG--GTTGTTCCTTCATTGT-------T-T-TACGCCCAGT-ATTTGGAAAA-TAGC-TCATTTTGCACGGGAACTGCAT----TGGTCGCACCTTTTTGT-CAACACTC--GCA-ACGG-AACGCAG-G------GGG------GAGTC-GACTTTC-GTAA-AAGATGC-TA-CAACAGGG-AGTCGCAACAAAACAA--TGTTATGCTCATT-CATTTCAAATGTCGTACAGTT---------CCCTGAAACGATATTACTTT--GCAA-TCTT-TGTGCGCT-CTTACGCTTGTTGTCACTGTCTTTT-AT--TTGACTTG---ATTT-ACCGAT-CTCCAACCGCTTTGTCGTTCAC-AGCTTCACCAAACCGTTCA-CGGTC-TAT---TGTT--A---GTTTG-TTTTG-CA---T-CAAAA--GT-CTTAATA-TTCAT-ACAAGG-AGAGACT-----AAAAG--------TTTG---------TCAATCATGCTA-CATTTGAA
gi|20 : TCG-A--TTCGTGT-CAACG-TT--ACA-AAAGTAACGTA--G------GGG------GAGTC-TTTTATC-GGC--AAGATTCAGA-TTG-GAGG-AGTC---ACAAAAT-AATTGCTG---ACATT-CATCT-AAATGT-cac
gi|22 : ACCGAG--TA-CAA-CCGTT---CTTGGGG----------G---CG-CTAAAAAGAAC-GG-AGAGTCG-CTTTC-AC-GC-CAttgatat
gi|23 : cTT--GTTGTT-CTTCATTGT-------T-T-AACGGCCAAT-ATTTGG
gi|24 : ATCGTG--TA-CAA-CCATTA-CTTTGGGA----------GAGTCG-C
gi|25 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------G
gi|26 : cccACCGTG--TA-CAA-CCGTTA-CTTTGGG
gi|27 : tacACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------
gi|3 : cA-CAA-CCGTTA-ACTTGGGA----------GAGTCG-CTGCAAAGAACGGG-GAGGTCG-CATTCAAC-GC-AAGGGA-GAGTCGAAAATCCTC-GG----CTTCGA-TTCAGGCCG-AAAG-----------GTAG-TCATCGCTTTGTT-----CTTGCA--T--TTGCAT--C-CA-TTACTT--TT---ACAA-ATGAATG--------T---AT-------CGCA-AGGGAA--CAATAGG-ATAACTAAGGT-ACAT---A----T---A--------T--A--TA---G---GCAGTTTGGACGGG--TTGAC---T-------TCTAATATGGTCATACA-----TTCGA---CAA-CAATTTGCAAA-ATA-AA---GA-TTTT-GC--A-GT-----GTC--GA-TGACAAAA----CAT--TAC-A--T-TA-TG-A-ATAATTAC-GCAAG-AAACTTGAAAGT-----GAC---AT-CC-AAATGAATCAT--A-T-TTT--GTTGTT-TTTCATTG--------T-T-AACG-CCGGT-ATTTGG-AAA-TA-C-TCA-TTTGC---GGGA-TGCAT--G--GGTCG-A--TTCT--T-TAAGA--T--G-A-AAGGTAACGCA--G------GGG------GAGTC-GATTTTCGGTTA-AAGATTCAGACCAG-GGGGTAGT--CGGCAAAATAAA-TGTTG---TCATTGCA-TT-AAATGTGGTACATT-----------TCTGAAACGATCTTAATTT----AATTTTT-TGTGCGCT-CTC-CGTGTGTC------CTCTTTTCATAGTT--CTTGGGC-TTT-ACTGAT-CTCCAACCGC-TTGT-GTTCAG-AG-TTGACCAAAGCGTTC-CGGGTC-CGTTTATGTTTCAATCGTTTGTTTTTA-CA---T-CAAAA--GT-CGTAA-G-TTCATCACAAGC-AGAGACTA
gi|4 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTTG-CTAAAAAGAACG-----------CATTCAAC-GC-CAGGGG-GAGTCGGAAATCC-C-GGCCCTCTTCAA-TTTCAGCCG-AAAG-----------GTAGGTCA-CG-TTTTCT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------AACA-CGG-AA--CAATATG-ATAACTAAGGT-ACAT---C----T---T--------T--T--AA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCAA---CA--CCATTTGCAAA-ATAGAA---AA--TTT-GC--A-GT-----GTC--AA-TGACAAAAA---CAT--TAC-G--T-TG-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGC-AG--AAC---AT-CC-AAATGTATCAT--A-T-T-----TAGTT-CTTCATTGT-------T-T-AACACCCAGT-ATTTGGAAAA-TA-C-TCA-TTTGC---AGAA-TGCAT--G-GGATCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAA-G------GGGGTGGGTGGGTC-GATTTTC-ATTA-AAGATTCAGA-CAG-GGGG-AGTCG---CAAAAT-AATTGTTG---TCATT-CATTT-ATAGGT-GTACAGTCCTTGATTGACCCTGAAACAATCCTACTTTTGACAATTTTTGTGTGTGCT-CTC-TGTGTGTC------CTCTGTTCATA---GATTT--ACATTT-ACCGAT-CTCCAACCGC-TTGT-GCTCAG-AA-TTCAACAAG-CGTTCACCGGTCACATA--GGTTTCAATCTTTTG-TTGTG-atag
gi|5 : CCATG--CA-TAA-CCGTTA-TTTGGGGGAGTCTGCCACGAGTCA-CTAATAAGGACGAG-GGAGTCA-CATCTAAT-GC-CAGGGG--AGTC---AATCTCC-G-----CTTGGA-ATTCGGCAG-GAAA-----------GTAGGTTA-CCATTTTTT-----TTTTTA--T--TTCTAT--C-CA-AAACTT--TT---ACAA-AAGA-CA--------T---ATAAATTATTGCA-CGG-AA--CAATATG-ACTACCAAGGT-GCGT---C----T---A--------C--A--TC---A---GCAGTTTGTCTGGA--TTAACC--T-------TTTAGTATTGTCAAACAC----TTTGG---CA--CAATATGCAGA-ATGGAA---CA-TTTTCGC--T-AT-----GTC--AG-TAACAAAAA---CAT--TGC-A--C-AA-TAGA-ATAATTAA-ACAGCAAAA---ACAGAT-AG--CATGTAAT-TC-AAAGGTTTTGT--T-T-TTC--ATTGCT-TTTCATTGT-------T-T-AACACTCAGG-ATGTGGAAAA-TA-C-TCA-TTTAC---GGAA-TGCAT--G-CGGTTG-A--TATGTGT-CAACA-TT--GCA-AATGCAA--CAGAG------GGG------GAGTC-CAATTTC-GGTA-AAGAATCAGA-CAG-GAGG-AGT
gi|6 : --TA-CAA-CCGTTA-CTTTGGGA----------TACTCG-CTAAAAAGAACGGG-AGAGTCG-CTTTCAAC-AC-CAGGGG-GTGTCGGAAATTCTT-G-----CTTCGA-ATTCAACCG-AAAG-----------GTAGCTCA-GGCTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---AC-A-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATATG-ATAACTAAGGT-ACAG---G----T---A--------T--A--TA--------CAGTTTGCCGGGA--TTGACC--T-------TCTAGTATGGTCAAGCAC----TTCGA---CA--CAATTTGCAAA-ATAGAA---AA-TTTTCGC--A-GT-----GTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACT-------------------T-CC-CAATGAATCAT--A-T-TTT--GTTGTT-TTTCATTGT-------T-T-AACGCCCAGT-ATTGGGAAAA-TA-C-TCA-TTTGC---GGGA-TGCAT--T-TGGTCG-A--TTCTTGT-CAACA-TA--GAA-AATGTAACGCA--G------GGG------GAGTC-GATTTTC-GTTA-AAGta
gi|7 : GTCG-CATTCAAC-GC-CAGGGA-GAGTCGGAAATTCTC-G-----CTTCGA-TTCCCGCCA-AAAG-----------GTAGGTAA-CTTTTTTTT-----CTTGTA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CACA-CGG-AA--TAATATG-ATAATTAAGGT-ACAT---T----T---ACAGATGTAT--A--TA---G---GCAGTTTGTCGGGA--TTAACC--T-------TCTAGTATGGTCAAACAC----TTCGG---CA--CAATTTGCAAA-ATAGAA---AAGTTTC-AC--A-GT-----TTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAT-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGAATCAT--A-T-TTT--GTTGTT-TTTCATTGT-------T-T-AACGTCCAGT-ATTTGGAAAA-TA-C-TAA-TTAGC---GGAA-TGCATGGG-GGGTCA-A--TTTTTTT-CAACA-TT--GCA-AAGGTAATGCAG-G------GGG------GAGTC-AATTTTC---------ATTCAGA-C---GGGG-AGTCGCAA
gi|8 : GCA-CGG-AA--CAATACA-ATGGCCAAGGA-ACAT---C----T---G--------T--ACATA---ACATGCAGTTTGCCTGGA--TCAACC--C-------CCAAGCGTGGTCAAACAC----TTCGG---CA--CCATTTGCAGT-ATGGAA---CC-TTTTAGCT-ATAT-----GTC--GG-TGACAAAAA---TAT--TGC-A--T-TA-CAAA-ATAATTAC-GCAGCAAAACCAGATAGT-AA------------------GTATT------T-TTC--ATTATT-CTTCATTGTTTTTAAAT-T-AACACCCAGA-ATTTGGAAAA-TA-C-CTG-TTTAC---GGAA-TGCAT--G-AGGTCT-A--TCCGTGT-CAACG-TT--GCA-AAAGTAACAGAG-G------GAG------GAGTCAAATTTCC-G-TA-AATATTCAAA-TAG-GAGG-AGTC
gi|9 : AGAACGGA---------CTTT--AC-GC-CAGGAG-GATTCGATAATCTCC-G-----CTTGGA-AATCGACAG-CAAA-----------GTAGGTTA-CCATTTTGT-----CTTGCC--T--CTCTAA--C-CA-TTACTT--TT---GCAA-AAGA-TATATAGGCCT---AT-------CACA-CGG-AA--CAATAAG-ATAACTAAGGTAACAT---C----T---A--------C--A--TC---A---GCAGTTTGTCTGGA--TTAACC--TTTTTAAATTTAGTATAGCCAAACAC----TTCGA---AA--CCATTCGAAAA-A---AA---AA---TT-GC--A--T-----G-------TGAAAAAAG---CAA--TAT-AGGTGTA-TCAA-ATTATTag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AGAATTATACAAGCATACCTCATTTGCAGGGGATCGCAACATGGTAACAAGATCGGGGGG
Alignments
lowQualScore : 1111111111 11111 11111111111 11111111 1111111 111111111111111111111111111111111111 1111111111 111111 11111 11111 22222222222 1111111 11111 111111111 111111 2222 1111 111 1 2 6666666666 333 1 1 111 4444444 444444444444 11 1 222 1111 11111 11 1 2222222 1 11 222 555555555 111111111 1
lowQualScore : 44 3 3 2 1111111111 3 1 6 2 1 2 2 3 3 00000 44 1 3 44444444444 3 2 77777 44 33 33 2 2 44 888 3 3 11111111 555 4444444 3 3 44 1 3 6 999999999999999999999999999999999999 44 1111111111 0 7777 555 77 1 3 000000 44444 3 11111 44 3 555 44 3 77 3 3 3 3 3 1 00000000000 3 3 0 66 55 3 3 444 3 1111111 3 3 33 4 4 4 55 777 4 44444 3 55 0 4 4 55 4 999999999 111111 4 777777 5 0 5 5 2222 7777 444 8 3 0 0 5555555555 000 3 0 0 000 1111111 555555555555 3 8 8 55 0 8 8 8 6 0 99 222 7777 3 0 8 0 8 88888 33 0 3333333 0 00 000 555555555 444444444 1 5
lowQualScore : .. . . . .......... . . . . . . . . . ..... .. . . ........... . . ..... .. .. .. . . .. ... . . ........ ... ....... . . .. . . . .................................... .. .......... . .... ... .. . . ...... ..... . ..... .. . ... .. . .. . . . . . . ........... . . . .. .. . . ... . ....... . . .. . . . .. ... . ..... . .. . . . .. . ......... ...... . ...... . . . . .... .... ... . . . . .......... ... . . . ... ....... ............ . . . .. . . . . . . .. ... .... . . . . . ..... .. . ....... . .. ... ......... ......... . .
lowQualScore : 66 1 1 9 7777777777 1 2 2 9 0 9 9 1 1 88888 11 5 1 66666666666 1 1 77777 22 99 99 9 9 22 555 1 1 22222222 888 2222222 1 1 22 0 1 7 666666666666666666666666666666666666 66 1111111111 4 1111 444 33 1 3 777777 11111 3 77777 66 3 888 66 3 99 3 3 3 6 5 0 88888888888 6 6 3 77 00 6 6 888 6 8888888 6 6 77 0 0 0 22 000 0 44444 6 00 6 0 0 55 0 666666666 555555 0 444444 0 4 0 0 7777 8888 000 0 2 0 0 3333333333 333 2 0 0 555 0000000 222222222222 8 0 0 66 8 0 0 0 0 8 44 000 2222 2 8 0 8 0 55555 88 0 0000000 0 88 222 777777777 888888888 0 0
consensus : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCAAC-GC-CAGGGG-GAGTCGGAAATCCTC-G-----CTTCGA-TTTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATANG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCGA---CA--CAATTTGCAAA-ATAGAA---NA-TTTT-GC--A-GT-----GTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGTATCGT--A-T-TTT--GTTGTT-CTTCATTGT-------T-T-AACGCCCAGT-ATTTGGAAAA-TA-C-TCG-TTTGC---GGAA-TGCAT--G-NGGTCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAG-G------GGG------GAGTC-GATTTTC-GTTA-AAGATTCAGA-CAG-GGGG-AGTCGCGACAAAATAAATTGTTG---TCATT-CATTT-AAATGT-GTACAGTC---------CCCTGAAACGATCTTACTTT--GCAATTTTT-TGTGCGCT-CTC-CGCGTGTCG-----NTCTTTTCATA-TTGACTTGGGCATTT-ACCGAT-CTCCAACCGCTTTGT-GTTCAG-AG-TTCACCAAA-CGTTCACCGGTC-CAT---TGTTTCAATCGTTTG-TTTTG-CA---T-CAAAA--GT-C-TAATA-TTCAT-ACAAGT-AGAGACTAC-AGAAAAG--------TTTGAAAATTTGTTCGATCNTGCTAGCATTTGAA
Reference ( family-1066 ) : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCAAC-GC-CAGGGG-GAGTCGGAAATCCTC-G-----CTTCGA-TTTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATANG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCGA---CA--CAATTTGCAAA-ATAGAA---NA-TTTT-GC--A-GT-----GTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGTATCGT--A-T-TTT--GTTGTT-CTTCATTGT-------T-T-AACGCCCAGT-ATTTGGAAAA-TA-C-TCG-TTTGC---GGAA-TGCAT--G-NGGTCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAG-G------GGG------GAGTC-GATTTTC-GTTA-AAGATTCAGA-CAG-GGGG-AGTCGCGACAAAATAAATTGTTG---TCATT-CATTT-AAATGT-GTACAGTC---------CCCTGAAACGATCTTACTTT--GCAATTTTT-TGTGCGCT-CTC-CGCGTGTCG-----NTCTTTTCATA-TTGACTTGGGCATTT-ACCGAT-CTCCAACCGCTTTGT-GTTCAG-AG-TTCACCAAA-CGTTCACCGGTC-CAT---TGTTTCAATCGTTTG-TTTTG-CA---T-CAAAA--GT-C-TAATA-TTCAT-ACAAGT-AGAGACTAC-AGAAAAG--------TTTGAAAATTTGTTCGATCNTGCTAGCATTTGAA
gi|1 : ACCGTGGTTAACAAACCGTTAGCTATTGGA----------GAGTCGGCTAAAAAGAAAGCG-GGAGTCGGCATTCA-C-GCGCAGGGGAGAGTCGAAAATCCTC-G-----CTTCGATTTTCAG-CG-AAAG-----------GTAGGTCA-CGGTTTTCTTTTTGCTTGCATTT--TTGTAT--CGCATTTACTT--TTTACATAA-ATGG-TG--------CTCAATG------CGCAGCGG-AAGGCAATAGGAATAACTAAGGTAACAT---CA---T---A--------C--A--TATATG---GCAGTTTGCCTGGAATTTGACC--T-------TTTAGT-TTCTCAAACAC----TTCAA---CAGGCAATTTGCAAA-ATAGAAATTTT-TTTT-GTA-A-GTG----GTC--GACCGACAAAAAAAGCAT--TACAA--T-TAGCGAA-ATAATTACAGCAAGAAAACTTAAAAGTCAGACAGC---ATCCC-AAATGTAT-GT--ATT-TTT--GTTGTT-CTTCATTGT-------T-TAAACGCCCAGTAATTTG---AA-TA-CATCA-TTTGA---GGAG-TGC-T--GTTGGTCG-A--TTTTTGTCCAACA-TTTGGCGTAAGGTAACGCA---------GGG------GAGTC-GATTTTC-GTTAGAAAATTCAAA-CAG-GGGG-AGTCG---CAAAATAAA-TGTTG---TCTTT-
gi|1 : TTTTG-TGTGCGCTTCTA-GGCGTGTCG-----GTCTTTTCATAATT---TTGGGCATTTTACCGATGCTCCAACCGGTT-GT-GTTTAGCAG-TTCACCAAA-CGTTCACCGGTC-TAT---T--TT--ATTGTTTT-TTTTGGCA---TGCAAGAAGGT-C-TAATACTTCAT-ACAAGTTAGAGACTAT-AGAAGAGGTGAAAAATTTGAAAATTTGTTCGATCCTGCTAGCATTTGAAttgtgtgcgcttctaggcgtgtcggtcttttcataattttgggcattttaccgatgctccaaccggttgtgtttagcagttcaccaaacgttcaccggtctattttattgttttttttggcatgcaagaaggtctaatacttcatacaagttagagactatagaagaggtgaaaaatttgaaaatttgttcgatcctgctagcatttgaagca
gi|10 : accgtggttaacaaaccgttagctattggagagtcggctaaaaagaaagcgggagtcggcattcacgcgcaggggagagtcgaaaatcctcgcttcgattttcagcgaaaggtaggtcacggttttctttttgcttgcatttttgtatcgcatttactttttacataaatggtgctcaatgcgcagcggaaggcaataggaataactaaggtaacatcatacatatatggcagtttgcctggaatttgaccttttagtttctcaaacacttcaacaggcaatttgcaaaatagaaattttttttgtaagtggtcgaccgacaaaaaaagcattacaattagcgaaataattacagcaagaaaacttaaaagtcagacagcatcccaaatgtatgtatttttgttgttcttcattgtttaaacgcccagtaatttgaatacatcatttgaggagtgctgttggtcgatttttgtccaacatttggcgtaaggtaacgcaggggagtcgattttcgttagaaaattcaaacagggggagtcgcaaaataaatgttgtctACCGTG--TA-CAC-CAATTG-CTTT-------------------------AAAGAACGGG-GGAATCG-CTTTTAAC-GC-CAGAGG-GAGTCGGAAATCCTT-G-----CTTCGA-ATTCGGCCGGAAAGAAGGCCTACATGTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTACAA--C-CA-TTACTT--TT---ACAA-AAAA-TA--------T---GC-------CACA-CGG-AA--CAATACG-ATAATCAAGGT-ACAT---T----TTACA--------TTCA--TC---A---GCAGGTTGCCTGGA--TTAACCCTC-------TCTAGTATGGTTTAATACAGCATTGGA---CA--Cgca
gi|11 : ---AT-CG-AAAAGTTTTATTAA-T-TTTTAATTGTT-CTTCATTGT-------T-C-AACACTCAGA-ATTTGGAAGA-TA-C-TCG-CTTAC---AGAA-TATAT--T-GGGTCG-A--TAAGTAT-CAAAT-TT--TAA-AAAGTAATGGAG-GGATGGAGGG------GGGTC-GAATTTC-GGTG-AAGATtgctctcatatttggaaaaaaggc
gi|12 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CATTCAAC-GC-CAGGGA-GAGTCGAATATCCTC-T-----CTTCGA-TTTCAGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATAGG-ATAACTAAGGT-ACATATACAATGT---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------Tgatatgttatagcatgttgacaagggtacggatttgatatttgttgacatgtcgcatatgggtgtcactctatttctgaaa
gi|13 : --TTGTAA--C-TA-ATAATT--GC---AGAA-TTAC-TT--------T---AT-------TACA-TGG-CA--CAATGTA-ATAACTAAGG--GCAT---T----T---A--------C--A--TT---G---GCAATTTTGCAGGC--TTTATC--A-------T---GTATGCTCAAACAC----ATGGAATCTA--C--TTTGCAGATTTCAAA---AA-TGTT-ACCTG-GTACTAAGGC--AG-TGACAGAAA---CAT--TTC-A--T----TGAAGATATTTAC-t
gi|14 : GG---CA--AAATTTGCAGA-ATGGAA---CA-TTTT--C--G-GT-----GTCTCGG-TAACGAAAA---GATGTTAT-GG-T-CA-TAGA-ATAATTAC-ACAGCAAAACTTGATAGT-A----------T-TA-AAAT------T--A-C-TTT-----------TCATTGT-------TAC-AACACTCAGG-ATAAGGAAAAATA-C-TCG-TTTAC---GGAA-TACAT--G-CGATCG-A--ata
gi|15 : GGT----------GAGTTG-C-AAAAAGAATTGGTGGAGTCA-CTTTTAACTAC-T--GGG-AAGTCGGAATTTCTTTG-----CTTGGA-TT--GAC---AAAG-----------ATAG-TCA-TGGTTTTTT-----CTGGCA--TAATTATAG--C-TA-TTACTTGCTTG--ACAATGTGA-TG--------
gi|16 : ----------GAGTTG-C-AAAAAGAATTGGTGGAGTCA-CTTTTAAC-AC-TGGTGG-AAGTCGAATTTCTTT-G-----CTTGGA-AATTGAC-A-AAAG-----------ATAGGTCA-TGGTTTTTT-----CTGGCA--T--ATATATAGC-TA-TTACT------------------TG--------T------------------GG-AA--CAATGTG-ATAACTaactagataac
gi|17 : tTTCATA-GT--TTTG--CGTTT-ACCGAC-ATCCAATTG-TTTGT-GTTCAC-AG-TTCACCAAA-CGTTCACCG-----AT---TGTTT--ATAG---G-TTT---CATTCT-CAAAA--GTCC-T--CA-TTCAT-ACAAGT-AGAGACTACTAGAGAAG----------TGAAAAT
gi|18 : tgtgATAC----TTCGA---CA--CAATTTGCAAA-ATAGAG---AC-TTTTAGC--A-GT-----GTC--GA-TGTCAAAAA---CAT--TAC-T--T-TA-TGAA-ATAATTAC-GAATGAAAACTAAACATT-AG--AAC---AT-CC-AAATGTATCAT--A-T-TTT--GTgaa
gi|19 : -CTTTGGGA----------GAGTCT-CTAAAAAGAACGGG-GAAGTCG-GTTTCAAC-AC-CAGGGG-G----GGGGGTCCTC-G-----CTTCGA-TTTCGGCCG-GAAG-----------GTAAGTCA-CTGTTTTTT-----CTTGCA--T--TTATAG--C-CA-TT
gi|2 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CATTCAAC-GC-CAGGGC-GAGTCGGAAATCTTC-G-----CTTCGA-TTTCAGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATAGG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TTTAGTATTCTCAAACAC----TTCGA---CA--CAATTTGAAAA-ATAGAAT--TA-TTTT-GT--A-GT-----GTC--GA-CGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAT---AT-CCAAAATGTACCGT--A-TGTTG--GTTGTTCCTTCATTGT-------T-T-TACGCCCAGT-ATTTGGAAAA-TAGC-TCATTTTGCACGGGAACTGCAT----TGGTCGCACCTTTTTGT-CAACACTC--GCA-ACGG-AACGCAG-G------GGG------GAGTC-GACTTTC-GTAA-AAGATGC-TA-CAACAGGG-AGTCGCAACAAAACAA--TGTTATGCTCATT-CATTTCAAATGTCGTACAGTT---------CCCTGAAACGATATTACTTT--GCAA-TCTT-TGTGCGCT-CTTACGCTTGTTGTCACTGTCTTTT-AT--TTGACTTG---ATTT-ACCGAT-CTCCAACCGCTTTGTCGTTCAC-AGCTTCACCAAACCGTTCA-CGGTC-TAT---TGTT--A---GTTTG-TTTTG-CA---T-CAAAA--GT-CTTAATA-TTCAT-ACAAGG-AGAGACT-----AAAAG--------TTTG---------TCAATCATGCTA-CATTTGAA
gi|20 : TCG-A--TTCGTGT-CAACG-TT--ACA-AAAGTAACGTA--G------GGG------GAGTC-TTTTATC-GGC--AAGATTCAGA-TTG-GAGG-AGTC---ACAAAAT-AATTGCTG---ACATT-CATCT-AAATGT-cac
gi|22 : ACCGAG--TA-CAA-CCGTT---CTTGGGG----------G---CG-CTAAAAAGAAC-GG-AGAGTCG-CTTTC-AC-GC-CAttgatat
gi|23 : cTT--GTTGTT-CTTCATTGT-------T-T-AACGGCCAAT-ATTTGG
gi|24 : ATCGTG--TA-CAA-CCATTA-CTTTGGGA----------GAGTCG-C
gi|25 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------G
gi|26 : cccACCGTG--TA-CAA-CCGTTA-CTTTGGG
gi|27 : tacACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------
gi|3 : cA-CAA-CCGTTA-ACTTGGGA----------GAGTCG-CTGCAAAGAACGGG-GAGGTCG-CATTCAAC-GC-AAGGGA-GAGTCGAAAATCCTC-GG----CTTCGA-TTCAGGCCG-AAAG-----------GTAG-TCATCGCTTTGTT-----CTTGCA--T--TTGCAT--C-CA-TTACTT--TT---ACAA-ATGAATG--------T---AT-------CGCA-AGGGAA--CAATAGG-ATAACTAAGGT-ACAT---A----T---A--------T--A--TA---G---GCAGTTTGGACGGG--TTGAC---T-------TCTAATATGGTCATACA-----TTCGA---CAA-CAATTTGCAAA-ATA-AA---GA-TTTT-GC--A-GT-----GTC--GA-TGACAAAA----CAT--TAC-A--T-TA-TG-A-ATAATTAC-GCAAG-AAACTTGAAAGT-----GAC---AT-CC-AAATGAATCAT--A-T-TTT--GTTGTT-TTTCATTG--------T-T-AACG-CCGGT-ATTTGG-AAA-TA-C-TCA-TTTGC---GGGA-TGCAT--G--GGTCG-A--TTCT--T-TAAGA--T--G-A-AAGGTAACGCA--G------GGG------GAGTC-GATTTTCGGTTA-AAGATTCAGACCAG-GGGGTAGT--CGGCAAAATAAA-TGTTG---TCATTGCA-TT-AAATGTGGTACATT-----------TCTGAAACGATCTTAATTT----AATTTTT-TGTGCGCT-CTC-CGTGTGTC------CTCTTTTCATAGTT--CTTGGGC-TTT-ACTGAT-CTCCAACCGC-TTGT-GTTCAG-AG-TTGACCAAAGCGTTC-CGGGTC-CGTTTATGTTTCAATCGTTTGTTTTTA-CA---T-CAAAA--GT-CGTAA-G-TTCATCACAAGC-AGAGACTA
gi|4 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTTG-CTAAAAAGAACG-----------CATTCAAC-GC-CAGGGG-GAGTCGGAAATCC-C-GGCCCTCTTCAA-TTTCAGCCG-AAAG-----------GTAGGTCA-CG-TTTTCT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------AACA-CGG-AA--CAATATG-ATAACTAAGGT-ACAT---C----T---T--------T--T--AA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCAA---CA--CCATTTGCAAA-ATAGAA---AA--TTT-GC--A-GT-----GTC--AA-TGACAAAAA---CAT--TAC-G--T-TG-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGC-AG--AAC---AT-CC-AAATGTATCAT--A-T-T-----TAGTT-CTTCATTGT-------T-T-AACACCCAGT-ATTTGGAAAA-TA-C-TCA-TTTGC---AGAA-TGCAT--G-GGATCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAA-G------GGGGTGGGTGGGTC-GATTTTC-ATTA-AAGATTCAGA-CAG-GGGG-AGTCG---CAAAAT-AATTGTTG---TCATT-CATTT-ATAGGT-GTACAGTCCTTGATTGACCCTGAAACAATCCTACTTTTGACAATTTTTGTGTGTGCT-CTC-TGTGTGTC------CTCTGTTCATA---GATTT--ACATTT-ACCGAT-CTCCAACCGC-TTGT-GCTCAG-AA-TTCAACAAG-CGTTCACCGGTCACATA--GGTTTCAATCTTTTG-TTGTG-atag
gi|5 : CCATG--CA-TAA-CCGTTA-TTTGGGGGAGTCTGCCACGAGTCA-CTAATAAGGACGAG-GGAGTCA-CATCTAAT-GC-CAGGGG--AGTC---AATCTCC-G-----CTTGGA-ATTCGGCAG-GAAA-----------GTAGGTTA-CCATTTTTT-----TTTTTA--T--TTCTAT--C-CA-AAACTT--TT---ACAA-AAGA-CA--------T---ATAAATTATTGCA-CGG-AA--CAATATG-ACTACCAAGGT-GCGT---C----T---A--------C--A--TC---A---GCAGTTTGTCTGGA--TTAACC--T-------TTTAGTATTGTCAAACAC----TTTGG---CA--CAATATGCAGA-ATGGAA---CA-TTTTCGC--T-AT-----GTC--AG-TAACAAAAA---CAT--TGC-A--C-AA-TAGA-ATAATTAA-ACAGCAAAA---ACAGAT-AG--CATGTAAT-TC-AAAGGTTTTGT--T-T-TTC--ATTGCT-TTTCATTGT-------T-T-AACACTCAGG-ATGTGGAAAA-TA-C-TCA-TTTAC---GGAA-TGCAT--G-CGGTTG-A--TATGTGT-CAACA-TT--GCA-AATGCAA--CAGAG------GGG------GAGTC-CAATTTC-GGTA-AAGAATCAGA-CAG-GAGG-AGT
gi|6 : --TA-CAA-CCGTTA-CTTTGGGA----------TACTCG-CTAAAAAGAACGGG-AGAGTCG-CTTTCAAC-AC-CAGGGG-GTGTCGGAAATTCTT-G-----CTTCGA-ATTCAACCG-AAAG-----------GTAGCTCA-GGCTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---AC-A-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATATG-ATAACTAAGGT-ACAG---G----T---A--------T--A--TA--------CAGTTTGCCGGGA--TTGACC--T-------TCTAGTATGGTCAAGCAC----TTCGA---CA--CAATTTGCAAA-ATAGAA---AA-TTTTCGC--A-GT-----GTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACT-------------------T-CC-CAATGAATCAT--A-T-TTT--GTTGTT-TTTCATTGT-------T-T-AACGCCCAGT-ATTGGGAAAA-TA-C-TCA-TTTGC---GGGA-TGCAT--T-TGGTCG-A--TTCTTGT-CAACA-TA--GAA-AATGTAACGCA--G------GGG------GAGTC-GATTTTC-GTTA-AAGta
gi|7 : GTCG-CATTCAAC-GC-CAGGGA-GAGTCGGAAATTCTC-G-----CTTCGA-TTCCCGCCA-AAAG-----------GTAGGTAA-CTTTTTTTT-----CTTGTA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CACA-CGG-AA--TAATATG-ATAATTAAGGT-ACAT---T----T---ACAGATGTAT--A--TA---G---GCAGTTTGTCGGGA--TTAACC--T-------TCTAGTATGGTCAAACAC----TTCGG---CA--CAATTTGCAAA-ATAGAA---AAGTTTC-AC--A-GT-----TTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAT-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGAATCAT--A-T-TTT--GTTGTT-TTTCATTGT-------T-T-AACGTCCAGT-ATTTGGAAAA-TA-C-TAA-TTAGC---GGAA-TGCATGGG-GGGTCA-A--TTTTTTT-CAACA-TT--GCA-AAGGTAATGCAG-G------GGG------GAGTC-AATTTTC---------ATTCAGA-C---GGGG-AGTCGCAA
gi|8 : GCA-CGG-AA--CAATACA-ATGGCCAAGGA-ACAT---C----T---G--------T--ACATA---ACATGCAGTTTGCCTGGA--TCAACC--C-------CCAAGCGTGGTCAAACAC----TTCGG---CA--CCATTTGCAGT-ATGGAA---CC-TTTTAGCT-ATAT-----GTC--GG-TGACAAAAA---TAT--TGC-A--T-TA-CAAA-ATAATTAC-GCAGCAAAACCAGATAGT-AA------------------GTATT------T-TTC--ATTATT-CTTCATTGTTTTTAAAT-T-AACACCCAGA-ATTTGGAAAA-TA-C-CTG-TTTAC---GGAA-TGCAT--G-AGGTCT-A--TCCGTGT-CAACG-TT--GCA-AAAGTAACAGAG-G------GAG------GAGTCAAATTTCC-G-TA-AATATTCAAA-TAG-GAGG-AGTC
gi|9 : AGAACGGA---------CTTT--AC-GC-CAGGAG-GATTCGATAATCTCC-G-----CTTGGA-AATCGACAG-CAAA-----------GTAGGTTA-CCATTTTGT-----CTTGCC--T--CTCTAA--C-CA-TTACTT--TT---GCAA-AAGA-TATATAGGCCT---AT-------CACA-CGG-AA--CAATAAG-ATAACTAAGGTAACAT---C----T---A--------C--A--TC---A---GCAGTTTGTCTGGA--TTAACC--TTTTTAAATTTAGTATAGCCAAACAC----TTCGA---AA--CCATTCGAAAA-A---AA---AA---TT-GC--A--T-----G-------TGAAAAAAG---CAA--TAT-AGGTGTA-TCAA-ATTATTag
blockSeqs : . . . . AGTCTGCCAC . T T . T T . . T GCCCT A C G AAGGCCTACAT T G . . AA AG . . GC G T A TATAGGCC . AAATTAT . G . C . A TTACAGATGTATATAG . TTTTTAAA AGCA ATC A A T TTA ACCT T ACTAA TC . . GT . GG G . G . T T AGCATGTA . A TA TA . G TAA C TTTTAAA A . A A G . AT ACG C GGGG C CC . C . . GGGATGGA GTGGGT A GGTTA C C T GCAA AAT TGC G T . G CCTTGATTGA TGA T G . TAC GTCACTG AGTTCTTGGG G . . CT C . C C AC TTA TCAA A T . TTCT . C TTAATA C T ACT T . A .
blockSeqs : . . . . . . T T . A . . . . G T C . . . G . . . . . . . . . . . . . . . . G . . ATACAATGTATATAG . CTC . . . A . AAG AGCT . . . . . . . G . . . . A C AGAAC . . CA . . . G . . . . G . . . G . . TG . . . . . . GAG . . GGTG . . . GCAA AAA . . T . . . . T . . CC C TTGACTTG A . . T . . . G T A TCAA C . . T . . GTAAG . G . .
blockSeqs : . . . . . . T . . T . . . . . T C . . . G . . . . . . . . . . . . . . . . T . . TTTACATTCATCA . T . . . A . AA AGC . . . . . . . . . . . . T A AGAAT . . CG . . . G . . . . T . . . G . . GC . . . . . . GG . . GTAA . . . CGG AAT . . . . . . . . CT C AGTTTTG A . . C . . . . C . TA C . . T . . TCA . C
blockSeqs : . . . . . . T . . T . . . . . A C . . . G . . . . . . . . . . . . . . . . T . . CTGTACATAACAT . A . . . A . CA CGC . . . . . . . . . . . . T A AGAAC . . CA . . . G . . . . T . . . A . . GG . . . . . . AG . . ATTA . . . A AA . . AGATTTA . . . C . . . . . . A . . .
blockSeqs : . . . . . . T . . T . . . . . T C . . . G . . . . . . . . . . . . . . . . G . . TTACATTG . T . . . C . AC CGC . . . . . . . . . . . . T A AGAAC . . CA . . . G . . . . T . . . A . . GC . . . . . . GG . . GGTA . . . G
blockSeqs : . . . . . . T . . A . . . . . T C . . . G . . . . . . . . . . . . . . . . G . . CTATATAG . T . . . A . GA GT . . . . . . . . . . . . T A GAC . . TG . . . A . . . . T . . . A . . TT . . . . . . GG . . GTTA . . .
blockSeqs : . . . . . . T . . T . . . . . T A . . . C . . . . . . . . . . . . . . . . T . . ATATATAG . T . . . A . AA GC . . . . . . . . . . . . A A AA . . CA . . . G . . . . G . . . A . . GA . . . . . . G . . GGC . . .
blockSeqs : . . . . . . T . . A . . . . . T C . . . A . . . . . . . . . . . . . . . . T . . CTTTTAAG . T . . . A . CA GC . . . . . . . . . . . . . T A . . CA . . . G . . . . T . . . A . . T . . . . . . G . . GTA
blockSeqs : . . . . . . . . . A . . . . . A C . . . C . . . . . . . . . . . . . . . . T . . CTACATCA . T . . . C . AA AC . . . . . . . . . . . . . . . . . T . . . A . . . . T . . . G . . G . . . . . . G . . .
blockSeqs : . . . . . . . . . A . . . . . A A . . . T . . . . . . . . . . . . . . . . T . . CTACATCA . T . . . C . CC GC . . . . . . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . T . . . . . T . . . . A . . . . . . . . . . . . . . . . C . . GTATATA . C . . . . . AA C . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . A . . . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . T . . . . . .
blockSeqs : .
blockSeqCons : ** T* ***** ** *** *** ******* ** CTACATCG**************************** ** ** AA**** GC*** ***** *** AGAAC****** CA T* GN*** ** GG******* GTTA** GCGA AGTTTTG***** C* TA**
originalCons : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCAAC-GC-CAGGGG-GAGTCGGAAATCCTC-G-----CTTCGA-TTTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATANG-ATAACTAAGGT-ACAT---C----T---A--------T--A--TA---G---GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCGA---CA--CAATTTGCAAA-ATAGAA---NA-TTTT-GC--A-GT-----GTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGTATCGT--A-T-TTT--GTTGTT-CTTCATTGT-------T-T-AACGCCCAGT-ATTTGGAAAA-TA-C-TCG-TTTGC---GGAA-TGCAT--G-NGGTCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAG-G------GGG------GAGTC-GATTTTC-GTTA-AAGATTCAGA-CAG-GGGG-AGTCGCGACAAAATAAATTGTTG---TCATT-CATTT-AAATGT-GTACAGTC---------CCCTGAAACGATCTTACTTT--GCAATTTTT-TGTGCGCT-CTC-CGCGTGTCG-----NTCTTTTCATA-TTGACTTGGGCATTT-ACCGAT-CTCCAACCGCTTTGT-GTTCAG-AG-TTCACCAAA-CGTTCACCGGTC-CAT---TGTTTCAATCGTTTG-TTTTG-CA---T-CAAAA--GT-C-TAATA-TTCAT-ACAAGT-AGAGACTAC-AGAAAAG--------TTTGAAAATTTGTTCGATCNTGCTAGCATTTGAA
finalCons : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCAAC-GC-CAGGGG-GAGTCGGAAATCCTC-G-----CTTCGAT-TTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATANG-ATAACTAAGGT-ACATCTACATCG----------------------------GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCGA---CA--CAATTTGCAAA-ATAGAAAA----TTTTGC---A-GT-----GTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGTAGAAC------AT-CC-AAATGTATCAT--A-T-TTT--GTTGTT-CTTCATTGT-------T-T-AACGCCCAGT-ATTTGGAAAA-TA-C-TCG-TTTGC---GGAA-TGCATGN---GGTCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAGG-------GGG------GAGTC-GATTTTCGTTA--AAGATTCAGA-CAG-GGGG-AGTCGCGACAAAATAAATTGTTG---TCATT-CATTT-AAATGT-GTACAGTC---------CCCTGAAACGATCTTACTTT--GCAATTTTT-TGTGCGCT-CTC-CGCGTGTCG-----NTCTTTTCATAGTTTTG-----CATTT-ACCGAT-CTCCAACCGC-TTGT-GTTCAG-AG-TTCACCAAA-CGTTCACCGGTC-CAT---TGTTTA--TCGTTTG-TTTTG-CA---T-CAAAA--GT-C-TAATA-TTCAT-ACAAGT-AGAGACTAC-AGAAAAG--------TTTGAAAATTTGTTCGATCNTGCTAGCATTTGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AGAATTATACAAGCATACCTCATTTGCAGGGGATCGCAACATGGTAACAAGATCGGGGGG
Alignments
lowQualScore : 1111111111 11111 11111111111 11111111 1111111 3333333333333333333333333333333 1111111111 1111111 11111 11111 22222222222 1111111 11111 111111111 111111 2222 1111 111 1 2 6666666666 333 1 1 111 4444444 22222222 1 2222222222 11111 11 1 2222222 1 11 222 555555555 111111111 1
lowQualScore : 44 3 3 2 1111111111 3 1 6 2 1 2 2 3 3 00000 44 1 3 44444444444 3 2 77777 44 33 33 2 2 44 888 3 3 11111111 555 4444444 3 3 44 1 3 6 3 33 44 3333333333333333333333333333333 44 1111111111 0 7777 555 77 1 3 0000000 44444 3 11111 44 3 555 44 3 77 3 3 3 3 0 1 00000000000 3 3 0 22 55 3 3 444 3 1111111 3 3 33 4 4 4 55 777 4 44444 3 55 0 4 4 55 4 999999999 111111 4 777777 5 0 5 5 2222 7777 444 8 3 0 0 5555555555 000 3 0 0 000 1111111 1 22222222 8 8 8 8 8 8 6 0 99 7777777777 44 0 8 0 8 88888 33 0 3333333 0 00 000 555555555 444444444 1 5
lowQualScore : .. . . . .......... . . . . . . . . . ..... .. . . ........... . . ..... .. .. .. . . .. ... . . ........ ... ....... . . .. . . . . .. .. ............................... .. .......... . .... ... .. . . ....... ..... . ..... .. . ... .. . .. . . . . . . ........... . . . .. .. . . ... . ....... . . .. . . . .. ... . ..... . .. . . . .. . ......... ...... . ...... . . . . .... .... ... . . . . .......... ... . . . ... ....... . ........ . . . . . . . . .. .......... .. . . . . ..... .. . ....... . .. ... ......... ......... . .
lowQualScore : 66 1 1 9 7777777777 1 2 2 9 0 9 9 1 1 88888 11 5 1 66666666666 1 1 77777 22 99 99 9 9 22 555 1 1 22222222 888 2222222 1 1 22 0 1 7 3 66 66 6666666666666666666666666666666 66 1111111111 4 1111 444 33 1 3 1111111 11111 3 77777 66 3 888 66 3 99 3 3 3 6 4 0 88888888888 6 6 3 99 00 6 6 888 6 8888888 6 6 77 0 0 0 22 000 0 44444 6 00 6 0 0 55 0 666666666 555555 0 444444 0 4 0 0 7777 8888 000 0 2 0 0 3333333333 333 2 0 0 555 0000000 4 00000000 0 0 0 0 0 0 0 8 44 4444444444 00 8 0 8 0 55555 88 0 0000000 0 88 222 777777777 888888888 0 0
consensus : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCAAC-GC-CAGGGG-GAGTCGGAAATCCTC-G-----CTTCGA-TTTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATANG-ATAACTAAGGT-ACA-TC-T--A----C-------A--------T---C---G-GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCGA---CA--CAATTTGCAAA-ATAGAA-A---A-TTTT-GC--A-GT-----GTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGTATCGT--A-T-TTT--GTTGTT-CTTCATTGT-------T-T-AACGCCCAGT-ATTTGGAAAA-TA-C-TCG-TTTGC---GGAA-TGCAT--G-NGGTCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAG-G------GGG------GAGTC-GATTTTC-GTTA-AAGATTCAGA-CAG-GGGG-AGTCGCGACAAAATAAATTGTTG---TCATT-CATTT-AAATGT-GTACAGTC---------CCCTGAAACGATCTTACTTT--GCAATTTTT-TGTGCGCT-CTC-CGCGTGTCG-----NTCTTTTCATAGTTTT---G--CATTT-ACCGAT-CTCCAACCGC-TTGT-GTTCAG-AG-TTCACCAAA-CGTTCACCGGTC-CAT---TGTTTCAATCGTTTG-TTTTG-CA---T-CAAAA--GT-C-TAATA-TTCAT-ACAAGT-AGAGACTAC-AGAAAAG--------TTTGAAAATTTGTTCGATCNTGCTAGCATTTGAA
Reference ( family-1066 ) : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CNTTCAAC-GC-CAGGGG-GAGTCGGAAATCCTC-G-----CTTCGA-TTTCGGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATANG-ATAACTAAGGT-ACA-TC-T--A----C-------A--------T---C---G-GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCGA---CA--CAATTTGCAAA-ATAGAA-A---A-TTTT-GC--A-GT-----GTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGTATCAT--A-T-TTT--GTTGTT-CTTCATTGT-------T-T-AACGCCCAGT-ATTTGGAAAA-TA-C-TCG-TTTGC---GGAA-TGCAT--G-NGGTCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAG-G------GGG------GAGTC-GATTTTC-GTTA-AAGATTCAGA-CAG-GGGG-AGTCGCGACAAAATAAATTGTTG---TCATT-CATTT-AAATGT-GTACAGTC---------CCCTGAAACGATCTTACTTT--GCAATTTTT-TGTGCGCT-CTC-CGCGTGTCG-----NTCTTTTCATAGTTTT---G--CATTT-ACCGAT-CTCCAACCGC-TTGT-GTTCAG-AG-TTCACCAAA-CGTTCACCGGTC-CAT---TGTTT--ATCGTTTG-TTTTG-CA---T-CAAAA--GT-C-TAATA-TTCAT-ACAAGT-AGAGACTAC-AGAAAAG--------TTTGAAAATTTGTTCGATCNTGCTAGCATTTGAA
gi|1 : ACCGTGGTTAACAAACCGTTAGCTATTGGA----------GAGTCGGCTAAAAAGAAAGCG-GGAGTCGGCATTCA-C-GCGCAGGGGAGAGTCGAAAATCCTC-G-----CTTCGATTTTCAG-CG-AAAG-----------GTAGGTCA-CGGTTTTCTTTTTGCTTGCATTT--TTGTAT--CGCATTTACTT--TTTACATAA-ATGG-TG--------CTCAATG------CGCAGCGG-AAGGCAATAGGAATAACTAAGGTAACA-TCAT--A----C-------A--------TATAT---G-GCAGTTTGCCTGGAATTTGACC--T-------TTTAGT-TTCTCAAACAC----TTCAA---CAGGCAATTTGCAAA-ATAGAA-ATTTT-TTTT-GTA-A-GTG----GTC--GACCGACAAAAAAAGCAT--TACAA--T-TAGCGAA-ATAATTACAGCAAGAAAACTTAAAAGTCAGACAGC---ATCCC-AAATGTAT-GT--ATT-TTT--GTTGTT-CTTCATTGT-------T-TAAACGCCCAGTAATTTG---AA-TA-CATCA-TTTGA---GGAG-TGC-T--GTTGGTCG-A--TTTTTGTCCAACA-TTTGGCGTAAGGTAACGCA---------GGG------GAGTC-GATTTTC-GTTAGAAAATTCAAA-CAG-GGGG-AGTCG---CAAAATAAA-TGTTG---TCTTT-
gi|1 : TTTTG-TGTGCGCTTCTA-GGCGTGTCG-----GTCTTTTCATAATTTT---GGGCATTTTACCGATGCTCCAACCGG-TTGT-GTTTAGCAG-TTCACCAAA-CGTTCACCGGTC-TAT---T--TT--ATTGTTTT-TTTTGGCA---TGCAAGAAGGT-C-TAATACTTCAT-ACAAGTTAGAGACTAT-AGAAGAGGTGAAAAATTTGAAAATTTGTTCGATCCTGCTAGCATTTGAAttgtgtgcgcttctaggcgtgtcggtcttttcataattttgggcattttaccgatgctccaaccggttgtgtttagcagttcaccaaacgttcaccggtctattttattgttttttttggcatgcaagaaggtctaatacttcatacaagttagagactatagaagaggtgaaaaatttgaaaatttgttcgatcctgctagcatttgaagca
gi|10 : accgtggttaacaaaccgttagctattggagagtcggctaaaaagaaagcgggagtcggcattcacgcgcaggggagagtcgaaaatcctcgcttcgattttcagcgaaaggtaggtcacggttttctttttgcttgcatttttgtatcgcatttactttttacataaatggtgctcaatgcgcagcggaaggcaataggaataactaaggtaacatcatacatatatggcagtttgcctggaatttgaccttttagtttctcaaacacttcaacaggcaatttgcaaaatagaaattttttttgtaagtggtcgaccgacaaaaaaagcattacaattagcgaaataattacagcaagaaaacttaaaagtcagacagcatcccaaatgtatgtatttttgttgttcttcattgtttaaacgcccagtaatttgaatacatcatttgaggagtgctgttggtcgatttttgtccaacatttggcgtaaggtaacgcaggggagtcgattttcgttagaaaattcaaacagggggagtcgcaaaataaatgttgtctACCGTG--TA-CAC-CAATTG-CTTT-------------------------AAAGAACGGG-GGAATCG-CTTTTAAC-GC-CAGAGG-GAGTCGGAAATCCTT-G-----CTTCGA-ATTCGGCCGGAAAGAAGGCCTACATGTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTACAA--C-CA-TTACTT--TT---ACAA-AAAA-TA--------T---GC-------CACA-CGG-AA--CAATACG-ATAATCAAGGT-ACATTT-T--ACATTC-------A--------T---C---A-GCAGGTTGCCTGGA--TTAACCCTC-------TCTAGTATGGTTTAATACAGCATTGGA---CA--Cgca
gi|11 : ---AT-CG-AAAAGTTTTATTAA-T-TTTTAATTGTT-CTTCATTGT-------T-C-AACACTCAGA-ATTTGGAAGA-TA-C-TCG-CTTAC---AGAA-TATAT--T-GGGTCG-A--TAAGTAT-CAAAT-TT--TAA-AAAGTAATGGAG-GGATGGAGGG------GGGTC-GAATTTC-GGTG-AAGATtgctctcatatttggaaaaaaggc
gi|12 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CATTCAAC-GC-CAGGGA-GAGTCGAATATCCTC-T-----CTTCGA-TTTCAGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATAGG-ATAACTAAGGT-ACA-TA-T--A----CAATGTATA--------T---A---G-GCAGTTTGCCTGGA--TTGACC--T-------Tgatatgttatagcatgttgacaagggtacggatttgatatttgttgacatgtcgcatatgggtgtcactctatttctgaaa
gi|13 : --TTGTAA--C-TA-ATAATT--GC---AGAA-TTAC-TT--------T---AT-------TACA-TGG-CA--CAATGTA-ATAACTAAGG--GCA-TT-T--A----C-------A--------T---T---G-GCAATTTTGCAGGC--TTTATC--A-------T---GTATGCTCAAACAC----ATGGAATCTA--C--TTTGCAGATTTCAAA-A---A-TGTT-ACCTG-GTACTAAGGC--AG-TGACAGAAA---CAT--TTC-A--T----TGAAGATATTTAC-t
gi|14 : GG---CA--AAATTTGCAGA-ATGGAA-C---A-TTTT--C--G-GT-----GTCTCGG-TAACGAAAA---GATGTTAT-GG-T-CA-TAGA-ATAATTAC-ACAGCAAAACTTGATAGT-A----------T-TA-AAAT------T--A-C-TTT-----------TCATTGT-------TAC-AACACTCAGG-ATAAGGAAAAATA-C-TCG-TTTAC---GGAA-TACAT--G-CGATCG-A--ata
gi|15 : GGT----------GAGTTG-C-AAAAAGAATTGGTGGAGTCA-CTTTTAACTAC-T--GGG-AAGTCGGAATTTCTTTG-----CTTGGA-TT--GAC---AAAG-----------ATAG-TCA-TGGTTTTTT-----CTGGCA--TAATTATAG--C-TA-TTACTTGCTTG--ACAATGTGA-TG--------
gi|16 : ----------GAGTTG-C-AAAAAGAATTGGTGGAGTCA-CTTTTAAC-AC-TGGTGG-AAGTCGAATTTCTTT-G-----CTTGGA-AATTGAC-A-AAAG-----------ATAGGTCA-TGGTTTTTT-----CTGGCA--T--ATATATAGC-TA-TTACT------------------TG--------T------------------GG-AA--CAATGTG-ATAACTaactagataac
gi|17 : tTTCATAGTTTT---G--CGTTT-ACCGAC-ATCCAATTGT-TTGT-GTTCAC-AG-TTCACCAAA-CGTTCACCG-----AT---TGTTT--ATAG---G-TTT---CATTCT-CAAAA--GTCC-T--CA-TTCAT-ACAAGT-AGAGACTACTAGAGAAG----------TGAAAAT
gi|18 : tgtgATAC----TTCGA---CA--CAATTTGCAAA-ATAGAG-A---C-TTTTAGC--A-GT-----GTC--GA-TGTCAAAAA---CAT--TAC-T--T-TA-TGAA-ATAATTAC-GAATGAAAACTAAACATT-AG--AAC---AT-CC-AAATGTATCAT--A-T-TTT--GTgaa
gi|19 : -CTTTGGGA----------GAGTCT-CTAAAAAGAACGGG-GAAGTCG-GTTTCAAC-AC-CAGGGG-G----GGGGGTCCTC-G-----CTTCGA-TTTCGGCCG-GAAG-----------GTAAGTCA-CTGTTTTTT-----CTTGCA--T--TTATAG--C-CA-TT
gi|2 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTCG-CTAAAAAGAACGGG-GGAGTCG-CATTCAAC-GC-CAGGGC-GAGTCGGAAATCTTC-G-----CTTCGA-TTTCAGCCG-AAAG-----------GTAGGTCA-CGGTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CGCA-CGG-AA--CAATAGG-ATAACTAAGGT-ACA-TC-T--A----T-------A--------T---A---G-GCAGTTTGCCTGGA--TTGACC--T-------TTTAGTATTCTCAAACAC----TTCGA---CA--CAATTTGAAAA-ATAGAATT---A-TTTT-GT--A-GT-----GTC--GA-CGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGT-AG--AAT---AT-CCAAAATGTACCGT--A-TGTTG--GTTGTTCCTTCATTGT-------T-T-TACGCCCAGT-ATTTGGAAAA-TAGC-TCATTTTGCACGGGAACTGCAT----TGGTCGCACCTTTTTGT-CAACACTC--GCA-ACGG-AACGCAG-G------GGG------GAGTC-GACTTTC-GTAA-AAGATGC-TA-CAACAGGG-AGTCGCAACAAAACAA--TGTTATGCTCATT-CATTTCAAATGTCGTACAGTT---------CCCTGAAACGATATTACTTT--GCAA-TCTT-TGTGCGCT-CTTACGCTTGTTGTCACTGTCTTTTATTTGACTT---G---ATTT-ACCGAT-CTCCAACCGCTTTGTCGTTCAC-AGCTTCACCAAACCGTTCA-CGGTC-TAT---TG-TT--A--GTTTG-TTTTG-CA---T-CAAAA--GT-CTTAATA-TTCAT-ACAAGG-AGAGACT-----AAAAG--------TTTG---------TCAATCATGCTA-CATTTGAA
gi|20 : TCG-A--TTCGTGT-CAACG-TT--ACA-AAAGTAACGTA--G------GGG------GAGTC-TTTTATC-GGC--AAGATTCAGA-TTG-GAGG-AGTC---ACAAAAT-AATTGCTG---ACATT-CATCT-AAATGT-cac
gi|22 : ACCGAG--TA-CAA-CCGTT---CTTGGGG----------G---CG-CTAAAAAGAAC-GG-AGAGTCG-CTTTC-AC-GC-CAttgatat
gi|23 : cTT--GTTGTT-CTTCATTGT-------T-T-AACGGCCAAT-ATTTGG
gi|24 : ATCGTG--TA-CAA-CCATTA-CTTTGGGA----------GAGTCG-C
gi|25 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------G
gi|26 : cccACCGTG--TA-CAA-CCGTTA-CTTTGGG
gi|27 : tacACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------
gi|3 : cA-CAA-CCGTTA-ACTTGGGA----------GAGTCG-CTGCAAAGAACGGG-GAGGTCG-CATTCAAC-GC-AAGGGA-GAGTCGAAAATCCTC-GG----CTTCGA-TTCAGGCCG-AAAG-----------GTAG-TCATCGCTTTGTT-----CTTGCA--T--TTGCAT--C-CA-TTACTT--TT---ACAA-ATGAATG--------T---AT-------CGCA-AGGGAA--CAATAGG-ATAACTAAGGT-ACA-TA-T--A----T-------A--------T---A---G-GCAGTTTGGACGGG--TTGAC---T-------TCTAATATGGTCATACA-----TTCGA---CAA-CAATTTGCAAA-ATA-AA-G---A-TTTT-GC--A-GT-----GTC--GA-TGACAAAA----CAT--TAC-A--T-TA-TG-A-ATAATTAC-GCAAG-AAACTTGAAAGT-----GAC---AT-CC-AAATGAATCAT--A-T-TTT--GTTGTT-TTTCATTG--------T-T-AACG-CCGGT-ATTTGG-AAA-TA-C-TCA-TTTGC---GGGA-TGCAT--G--GGTCG-A--TTCT--T-TAAGA--T--G-A-AAGGTAACGCA--G------GGG------GAGTC-GATTTTCGGTTA-AAGATTCAGACCAG-GGGGTAGT--CGGCAAAATAAA-TGTTG---TCATTGCA-TT-AAATGTGGTACATT-----------TCTGAAACGATCTTAATTT----AATTTTT-TGTGCGCT-CTC-CGTGTGTC------CTCTTTTCATAGTTCTTGGG--C-TTT-ACTGAT-CTCCAACCGC-TTGT-GTTCAG-AG-TTGACCAAAGCGTTC-CGGGTC-CGTTTATGTTTCAATCGTTTGTTTTTA-CA---T-CAAAA--GT-CGTAA-G-TTCATCACAAGC-AGAGACTA
gi|4 : ACCGTG--TA-CAA-CCGTTA-CTTTGGGA----------GAGTTG-CTAAAAAGAACG-----------CATTCAAC-GC-CAGGGG-GAGTCGGAAATCC-C-GGCCCTCTTCAA-TTTCAGCCG-AAAG-----------GTAGGTCA-CG-TTTTCT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------AACA-CGG-AA--CAATATG-ATAACTAAGGT-ACA-TC-T------------------------T---TTAAG-GCAGTTTGCCTGGA--TTGACC--T-------TCTAGTATGGTCAAACAC----TTCAA---CA--CCATTTGCAAA-ATAGAA-A---A--TTT-GC--A-GT-----GTC--AA-TGACAAAAA---CAT--TAC-G--T-TG-TGAA-ATAATTAC-GCAAGAAAACTTAAAAGC-AG--AAC---AT-CC-AAATGTATCAT--A-T-T-----TAGTT-CTTCATTGT-------T-T-AACACCCAGT-ATTTGGAAAA-TA-C-TCA-TTTGC---AGAA-TGCAT--G-GGATCG-A--TTCTTGT-CAACA-TT--GCA-AAGGTAACGCAA-G------GGGGTGGGTGGGTC-GATTTTC-ATTA-AAGATTCAGA-CAG-GGGG-AGTCG---CAAAAT-AATTGTTG---TCATT-CATTT-ATAGGT-GTACAGTCCTTGATTGACCCTGAAACAATCCTACTTTTGACAATTTTTGTGTGTGCT-CTC-TGTGTGTC------CTCTGTTCATAGATTT---A--CATTT-ACCGAT-CTCCAACCGC-TTGT-GCTCAG-AA-TTCAACAAG-CGTTCACCGGTCACATA--GGTTTCAATCTTTTG-TTGTG-atag
gi|5 : CCATG--CA-TAA-CCGTTA-TTTGGGGGAGTCTGCCACGAGTCA-CTAATAAGGACGAG-GGAGTCA-CATCTAAT-GC-CAGGGG--AGTC---AATCTCC-G-----CTTGGA-ATTCGGCAG-GAAA-----------GTAGGTTA-CCATTTTTT-----TTTTTA--T--TTCTAT--C-CA-AAACTT--TT---ACAA-AAGA-CA--------T---ATAAATTATTGCA-CGG-AA--CAATATG-ACTACCAAGGT-GCG-TC-T--A----C-------A--------T---C---A-GCAGTTTGTCTGGA--TTAACC--T-------TTTAGTATTGTCAAACAC----TTTGG---CA--CAATATGCAGA-ATGGAA-C---A-TTTTCGC--T-AT-----GTC--AG-TAACAAAAA---CAT--TGC-A--C-AA-TAGA-ATAATTAA-ACAGCAAAA---ACAGAT-AG--CATGTAAT-TC-AAAGGTTTTGT--T-T-TTC--ATTGCT-TTTCATTGT-------T-T-AACACTCAGG-ATGTGGAAAA-TA-C-TCA-TTTAC---GGAA-TGCAT--G-CGGTTG-A--TATGTGT-CAACA-TT--GCA-AATGCAA--CAGAG------GGG------GAGTC-CAATTTC-GGTA-AAGAATCAGA-CAG-GAGG-AGT
gi|6 : --TA-CAA-CCGTTA-CTTTGGGA----------TACTCG-CTAAAAAGAACGGG-AGAGTCG-CTTTCAAC-AC-CAGGGG-GTGTCGGAAATTCTT-G-----CTTCGA-ATTCAACCG-AAAG-----------GTAGCTCA-GGCTTTTTT-----CTTGCA--T--TTGTAT--C-CA-TTACTT--TT---ACAA--TGA-TG--------T---AT-------CGCA-CGG-AA--CAATATG-ATAACTAAGGT-ACA-GG-T--A----T-------A--------T---------ACAGTTTGCCGGGA--TTGACC--T-------TCTAGTATGGTCAAGCAC----TTCGA---CA--CAATTTGCAAA-ATAGAA-A---A-TTTTCGC--A-GT-----GTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAC-GCAAGAAAACTT--------------------CC-CAATGAATCAT--A-T-TTT--GTTGTT-TTTCATTGT-------T-T-AACGCCCAGT-ATTGGGAAAA-TA-C-TCA-TTTGC---GGGA-TGCAT--T-TGGTCG-A--TTCTTGT-CAACA-TA--GAA-AATGTAACGCA--G------GGG------GAGTC-GATTTTC-GTTA-AAGta
gi|7 : GTCG-CATTCAAC-GC-CAGGGA-GAGTCGGAAATTCTC-G-----CTTCGA-TTCCCGCCA-AAAG-----------GTAGGTAA-CTTTTTTTT-----CTTGTA--T--TTGTAT--C-CA-TTACTT--TT---ACAA-ATGA-TG--------T---AT-------CACA-CGG-AA--TAATATG-ATAATTAAGGT-ACA-TT-T--A----C-------AGATGTATAT---A---G-GCAGTTTGTCGGGA--TTAACC--T-------TCTAGTATGGTCAAACAC----TTCGG---CA--CAATTTGCAAA-ATAGAA-A---AGTTTC-AC--A-GT-----TTC--GA-TGACAAAAA---CAT--TAC-A--T-TA-TGAA-ATAATTAT-GCAAGAAAACTTAAAAGT-AG--AAC---AT-CC-AAATGAATCAT--A-T-TTT--GTTGTT-TTTCATTGT-------T-T-AACGTCCAGT-ATTTGGAAAA-TA-C-TAA-TTAGC---GGAA-TGCATGGG-GGGTCA-A--TTTTTTT-CAACA-TT--GCA-AAGGTAATGCAG-G------GGG------GAGTC-AATTTTC---------ATTCAGA-C---GGGG-AGTCGCAA
gi|8 : GCA-CGG-AA--CAATACA-ATGGCCAAGGA-ACA-TC-TGTA----C-------A--------TAA-C---ATGCAGTTTGCCTGGA--TCAACC--C-------CCAAGCGTGGTCAAACAC----TTCGG---CA--CCATTTGCAGT-ATGGAA-C---C-TTTTAGCT-ATAT-----GTC--GG-TGACAAAAA---TAT--TGC-A--T-TA-CAAA-ATAATTAC-GCAGCAAAACCAGATAGT-AA------------------GTATT------T-TTC--ATTATT-CTTCATTGTTTTTAAAT-T-AACACCCAGA-ATTTGGAAAA-TA-C-CTG-TTTAC---GGAA-TGCAT--G-AGGTCT-A--TCCGTGT-CAACG-TT--GCA-AAAGTAACAGAG-G------GAG------GAGTCAAATTTCC-G-TA-AATATTCAAA-TAG-GAGG-AGTC
gi|9 : AGAACGGA---------CTTT--AC-GC-CAGGAG-GATTCGATAATCTCC-G-----CTTGGA-AATCGACAG-CAAA-----------GTAGGTTA-CCATTTTGT-----CTTGCC--T--CTCTAA--C-CA-TTACTT--TT---GCAA-AAGA-TATATAGGCCT---AT-------CACA-CGG-AA--CAATAAG-ATAACTAAGGTAACA-TC-T--A----C-------A--------T---C---A-GCAGTTTGTCTGGA--TTAACC--TTTTTAAATTTAGTATAGCCAAACAC----TTCGA---AA--CCATTCGAAAA-A---AA-A---A---TT-GC--A--T-----G-------TGAAAAAAG---CAA--TAT-AGGTGTA-TCAA-ATTATTag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AGAATTATACAAGCATACCTCATTTGCAGGGGATCGCAACATGGTAACAAGATCGGGGGG