lowQualScore : 444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 55 11 111111111111111111111111111111111111111111111111111111111111111111 2 1 22222222 11 11 1111 44444444444444444444 333333333333333 111 1 888888888888888888888888888888888888 44444444444444 3333333333333333333333333 11 1 1 2222 11 5555555555555555555555555555555555555555555555555555555555555555 11 1
lowQualScore : 55 6 22 777777777777777777777777777777777777777777777777777777777777777777 0 6 0 3 55555555 8 1 99 11 66 4444 11111111111111111111 2 6 888888888888888 6 888 1 3 99 3 2 3 6 111111111111111111111111111111111111 00000000000000 6 6 4444444444444444444444444 88 00 66 5 6 5 5 99 5 5 5 4444 44 9999999999999999999999999999999999999999999999999999999999999999 55 66 2 8888 666 3 777 0
lowQualScore : .. . .. .................................................................. . . . . ........ . . .. .. .. .... .................... . . ............... . ... . . .. . . . . .................................... .............. . . ......................... .. .. .. . . . . .. . . . .... .. ................................................................ .. .. . .... ... . ... .
lowQualScore : 00 0 00 000000000000000000000000000000000000000000000000000000000000000000 0 7 0 2 55555555 0 0 66 00 88 2222 33333333333333333333 5 7 333333333333333 7 333 7 3 22 5 5 2 7 000000000000000000000000000000000000 99999999999999 7 7 3333333333333333333333333 11 00 77 0 9 6 0 55 0 0 0 4444 55 9999999999999999999999999999999999999999999999999999999999999999 55 66 8 0000 444 6 999 0
consensus : AGGAA--ATTTCAGGAAAAAAAGAATTTTTAAAACATTTGTA-TTTGTGGAAACTGATGGCATATCAAAAACTTGACCACCA-TTTTTGATGGTGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTT--TTTNTGGTA----GTT-GAT--GTT--------AA-TCTGGGGGATCAGACAT-ATT-------TA-TTA---TTTTG-CAT--TGTTGACTTTCTTTCTCCATTTC-AGTGAC------TTTTT----------------TCAT--TG-ATTGTTTGTG-AG-----------TCTGATC-CC-C----------TT----------G--TANATA-TTTTNTC-TAANTTGCGTC-ATTTN-AATA-AATG-AC-ATTTT-C-ATA-CTCA-----ACCTGCCT-CAT-------G-T-T-T-TAN-T-G-T-A-T-GAT-NC----AGC----C--AAAAACATAGCTGCGGTGANCTTG-TT-CAG---C-ATNTNGAGACATAAA-CAATA
Reference ( gi|2 ) : AGGAAGCATTTTAAAAAAAAAA-------TGAAA----TGTAGTTT-----AATTGAT----TAT--AAAAC--GGCC--TATTTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTT--TTTATGGTA----GTT-GAT--GTT--------AA-TCTGGGGGATCAGGCAT-ATT-------TA-TTA---TTTTG-CAT--TGTTGACTTTCTTTCTCCATTTC-AGTGAC------TTTTT----------------TCAT--TGCATTGTTTGTG-AG-----------TCTGATC-CC-C----------TT----------G--TAAATA-GTTCGTT-TAAATTGCGTC-ATTTG-AATA-AATG-AC-ATTTA-C-ATA-CTCA-----ACCTGTCT-CAT-------G-T-T-T-TAG-T-G-T-A-T-GAT-GC----AGC----C--AAAAAC-TAGCTGCGGTGACCTTG-CT-TAG---C-ATTTTAAGACATAAA-TAATAT
gi|1 : AGGAA--ATTTCAGGAAAAAAAGAATTTTTAAAACATTTGTA-TTTGTGGAAACTGATGGCATATCAAAAACTTGACCACCA------GATGGTGC-ATTTT-TTTTTT---TTTCAGCA-TCTTTGCTACGTTGTT--TTTATGGTT----GTT-GAT--GTC--------GACTTTTGGGGATCAGACAT-ATTG------GA-TTAT--TTTTT-CAT--TGTTGACTTTCCATCTCCATTTC-AAAGAC-------ATTT----------------TAAG--TGGATTGTTTGTG-AG-----------TCTGATC-CC-C----------TT----------G--TTAGTA-GTTTGTTATAAATTTCGTT-ATTTG-AATA-AATG-AC-ATTT--C-ATA-CTCA-----ATCTGCCT-TAT-------G-T-T-TATA--T-A-T-A-T-GAT-AC----AG-----C--AAAAAC-TAGTTGCGGTGACCTTG-TT-CAG---C-ATTT
gi|4 : aTTTTTGATG-TGCCATCTT-TTTTGC---T----G------TCG--AGCTTATCAATTT-TGGCA----CTT-ATT--GTTCGTAAGTAAA-TTTGGGG-ATCAG-C----TT-------TA-TTG---ATATGTCATGATGTAG------TTTGTCAAT----AGT----------TTTT----------------GCTC--TG-ATCCCTTATT-A------------------C-AC-T----------TT----------G--TATATA-TTTTTCC-TAATTTGCGTC-ATTTT-AATA-AATG-ACAATTT-----TA-CTC-------TCT---T-CAT-------G-TGTGT-TGA-T-GTT-ATT-GAT-CT----AGCTAAGC--AAAAACAGAGCTGCGCTGAGATTG-TG-CAG---C-ATGAGGAAACATAAA-c
gi|5 : aCCATCTT-TTT-GC---T----GCA-TCTTT--AAGGTTGTT--TT-ATGGTA----GTTTGATACGTT--------AA-TCTGGGGGATCAG-CATGATT-------TA-TTA---TTT-G-CAT--TGT-GACTTTCTTTC-CCATT-C-AGTGAC------TTTTT----------------T-AT--TG-ATTGTT-GTGGAG-----------TCTGATC-CCAC----------TT----------GGATAAATA-TGTCGTT-TAA-TTGCGTCCATTTG-A-TACAATGGAC-ATTTA-CCATAACTCA-----ACCTGTCT-CAT-------G-T-T-T-T-G-T-G-T-A-T--AT-GC----AGC----CCAAAAAAC-TAGCTGCGGTGACCTTGCCT-TAG---C-ATTT
gi|6 : TCTTATTTTGTATGT----GCAATCTTTGTAAGGTTGTT--TTACGGGTA----GTT---T--------------------GGGGATCAGACAT--TG-------AA-TTA---TTTTGTTAT--TGTTGA----CTTTCTCCATTTC-AGTGAT------ATTTT----------------CTGT--CG-A-TGTTTGTG--G-----------TCTGATCACC-C----------TC----------G--T-GATA-GTTTATTATAAATTTCGTT-ATTTA-AATA-AATG-AC-ATTTT-CAATA-CTTA-----AACTGCCT-CACTA-----GTT-T-T-TA----A-T-A-T-GATGGC----AG-----C--AAAAGC-TAGCTGTAAT-ATCTTG-TTCTAG---A-ATT
gi|9 : ----GCA-TCATTGTAAGGTTGTT--TTTTTGGTGTTATGTTTGAT--GTT--------AA-TCTGGGG-ATCAG-CTT-ATTAGATATATA-TTGAAGTTTTG-CAT--TGGTGACTTTCTTTCTCCATTTCTATTGGCGAAGCATTTTTTTTTGTTGTAAATAGATCATAATGCATTGTTTGTG-AG-----------TCT
gi|14 : GTA----CTT-GAT---CT--------GA-TCTTGTGGATCAGATAT-ATT-------TAATTA---TTCCA-CAT--TGTTGACTTTCTTTCTCCATTTC-AGtgcatccttaggtctgtaa
gi|8 : ttaatgttATAGTTTTTG-C------------TCTGATC-CC-C----------TTATTACACTTTG--TATATA-TTTTTTCCTAATTTGCGTC-ATTTT-AATA-AATG-ACCATTTT-C-AT--CTC------------TT-CAT-------G-TGTGT-TGA-T-G-TTA-TTGAT-CT----ATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TG-CAG---C-ATGAGGAAACATAA
gi|7 : ttttgtgacttattgttcgtaagtaaatttaggggatcagcttattgatatgtcatgatgtagtttgtcaGTTTGTG-AAATAGTTTTTGCTCTGATC-CC-CTTATTACACTTT----------G--TATATATGTTTTCC-TAATTTGCGTC-ATTTT-AATA-AATG-ACAATTTT-C-AT--CTC------------TT-CAT-------G-TGTGT-TGA-T-GTT-ATT-GAT-CT----ATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TG-CAG---C-ATGAGGAAACATAA
gi|3 : aattttggcacttattgttcgtaagtaaatttaggggatcagcttattgatatgtcatgatgta----------TT----------A--TAGATT-TTTCATC--ATATT-CGTC-GTTTTCAATA-AATG-AC-ATTTTTC-ATC-ATCA-----ACAT---T-AGT-------G-T-T-T-CAT-T-T-G-A-T-TAT-CCTCTCAGC----A--AAAAACAGAGCTGCGGTGAGCTTG-TG-TGG---C-ATGATAAAACATAA
gi|10 : ttaattttggtgtgtcatcgtcttggttcatgtatacacttgatgtagtgtgtattatttgtacacatatagtgtatgtgtaattttaggggatcagtatattgaaataccaattagctgatagtataagcttctatcagggtTT-TAAATTTTGTC-ATTTG-AATA-AATG-AT-ATTTA-C-ATT-CTCATGGTTACATATTTACATTCTTATGG-T-T-T-TAGGT-A-T-A-T-GAT-AC----AGC----C--AAAACC-TAGCAACCGTGACCATG-CT-CAT---C-ATTTAAAGACATAAA-CA
gi|13 : tT-CAT-------G-T-T-T-TAT-TTG-T-A-T-GGT-GC----AGC----C--TAAAAG-TAGCTGCGGTGAACTTG-CT-TAGTGAC-ATCTTgaattatctaaacggcgt
gi|15 : ta--AAAAAC-TAACTGCGGTGACCTTG-CT-TAG---C-AATTTAAGACATAAAGCAATAttcattaaacaatcatt
gi|16 : AGCTGCGGTGACC-TG-AT-TAG---CAATGTTAAGAAATAAA-TAA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TAAGGGGATCAGCATATTGAAATAGCATTTTACACTGTGTTCTTAGCTCTATGTTTGATCCCCTATCAAAGATTATAGATTTCATCATTTAAAACTGTGACATGTTTCATCACTACATTGGTGTTACAT
Unaligned ( gi|12 ): GTTTTCGTCGTTTTCAATAAATGGCATTTTTCATCTAGACTACACTGATGTTCGTCTGATTGACCCCCCAACTCCTGCAGTGAGAATGCGCAGCACAAGGAAACAAA
Alignments
lowQualScore : 22 3333333 2222 2 22222 2222 11 11 333333 2 11111111 1111 22222222222222222 2222222 111 1 222222222 44444444444444444 4444444444 1 11 44444444444444444444 2222222222222 1 2222 11
lowQualScore : 77 3333333 4444 0 66666 3333 88 88 000000 3 2 8 0 99999999 6 5 6 22 2222 66666666666666666 5 0 4 3333333 77 5 5 555 0 1 77 1 0 1 5 777777777 666 00000000000000000 5 88 5 5 3333333333 66 11 5 1 3 5 5 4 99 4 4 4 4 4 555 4 44 11111111111111111111 55 7 6666666666666 0 9999999 3333 44 99 1 3 0 555 3 6666 0 4 6
lowQualScore : .. ....... .... . ..... .... .. .. ...... . . . . ........ . . . .. .... ................. . . . ....... .. . . ... . . .. . . . . ......... ... ................. . .. . . .......... .. .. . . . . . . .. . . . . . ... . .. .................... .. . ............. . ....... .... .. .. . . . ... . .... . . .
lowQualScore : 55 0000000 0000 0 00000 0000 00 55 333333 3 5 0 8 22222222 7 7 7 77 1111 00000000000000000 7 7 3 6666666 11 7 7 777 1 4 99 7 7 4 7 888888888 777 00000000000000000 0 88 7 7 8888888888 99 44 0 0 3 3 0 0 00 0 0 0 0 0 777 0 77 00000000000000000000 00 3 5555555555555 9 0000000 2222 66 22 0 1 2 888 3 8888 5 0 7
consensus : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----GTT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATT-TA-TTA---TTTTG-CAT--TGTTGACTTTCTTTCTCCATTTC-AGTGAC--------TTTTTTCGTTG-----------------ATTGTT-TGTGAGTCTGATC-CC-CTT----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GA-C-A-TTT-T-C-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAG-T-G-TA-TGAT-NC----AGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
Reference ( family-106 ) : AGGAA--ATTTCAGGAAAAAAAGAATTTTTAAAACATTTGTA-TTTGTGGAAACTGATGGCATATCAAAAACTTGACC-ACCATTTTTGATGGTGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----GTT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATT-TA-TTA---TTTTG-CAT--TGTTGACTTTCTTTCTCCATTTC-AGTGAC--------TTTTTTCATTG-----------------ATTGTT-TGTGAGTCTGATC-CC-CTT----------G--TANATAT-TTTNTC-TAANTTGCGT-CATTTN-AATA-AAT-GA-C-A-TTT-T-C-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAN-T-G-TA-TGAT-NC----AGC----C--AAAAACATAGCTGCGGTGANCTTG-TTCAG---C-ATNTNGAGACA-TAAA-CAATA
gi|1 : AGGAA--ATTTCAGGAAAAAAAGAATTTTTAAAACATTTGTA-TTTGTGGAAACTGATGGCATATCAAAAACTTGACC-ACCA-----GATGGTG-CATTTT-TTTTTT---TTTCAGCA-TCTTTGCTACGTTGTTT-TTATGGTT----GTT-GAT--GTC--------GACTTTTGGGGATCAG------ACAT-ATTGGA-TTAT--TTTTT-CAT--TGTTGACTTTCCATCTCCATTTC-AAAGAC--------ATTTTAAGTGG-----------------ATTGTT-TGTGAGTCTGATC-CC-CTT----------G--TTAGTAG-TTTGTTATAAATTTCGT-TATTTG-AATA-AAT-GA-C-A--TT-T-C-AT-ACTCA---------ATCTGC---CTTAT--G-T-T-TATA--T-A-TA-TGAT-AC----AG-----C--AAAAAC-TAGTTGCGGTGACCTTG-TTCAG---C-ATTT
gi|10 : aTT-TAAATTTTGT-CATTTG-AATA-AAT-GA-T-A-TTT-A-C-AT-TCTCATGGTTACATATTTACATTCTTAT--GGT-T-T-TAGGT-A-TA-TGAT-AC----AGC----C--AAAACC-TAGCAACCGTGACCATG-CTCAT---C-ATTTAAAGACA-TAAA-CAc
gi|12 : tTTTCGT-CGTTTTCAATA-AAT-GG-C-ATTTT-T-C-AT--CT-A---------GACTACA--CTGAT--G-T-T-------C-G-TC-TGAT-TG----ACC----C--CCCAACTC--CTGCAGTGAGAATG-CGCAG---C-ACAAGGAAACA-gaattatctaaacggcgt
gi|13 : gtTCAT--G-T-T-T-TAT-TTG-TA-TGGT-GC----AGC----C--TAAAA-GTAGCTGCGGTGAACTTG-CTTAGTGAC-ATCTT--TTCATTAAA-CAATaa
gi|14 : taTGTTGTA----CTT-GAT---CT--------GA-TCTTGTGGATCAG------ATAT-ATT-TAATTA---TTCCA-CAT--TGTTGACTTTCTTTCTCCATTTC-AGcatt
gi|15 : ttaa--AAAAAC-TAACTGCGGTGACCTTG-CTTAG---C-AATTTAAGACA-TAAAGCAATA
gi|16 : AGCTGCGGTGACCTGA-TT-AG---CAATGTTAAGAAA-TAAA-TAA
gi|2 : cAGGAAGCATTTTAAAAAAAAAA-------TGAAA----TGTAGTTT-----AATTGAT----TAT--AAAAC--GGCCTAT--TTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTATGGTA----GTT-GAT--GTT--------AA-TCTGGGGGATCAG------GCAT-ATT-TA-TTA---TTTTG-CAT--TGTTGACTTTCTTTCTCCATTTC-AGTGAC--------TTTTTTCATTGC----------------ATTGTT-TGTGAGTCTGATC-CC-CTT----------G--TAAATAG-TTCGTT-TAAATTGCGT-CATTTG-AATA-AAT-GA-C-A-TTT-A-C-AT-ACTCA---------ACCTGT---CTCAT--G-T-T-T-TAG-T-G-TA-TGAT-GC----AGC----C--AAAAAC-TAGCTGCGGTGACCTTG-CTTAG---C-ATTTTAAGACA-TAAA-TAATAagtgtt
gi|3 : TT----------A--TAGATTT-TTCATC--ATATT-CGT-CGTTTTCAATA-AAT-GA-C-A-TTT-TTC-AT-CATCA---------ACAT------TAGT--G-T-T-T-CAT-T-T-GA-TTAT-CCTCTCAGC----A--AAAAACAGAGCTGCGGTGAGCTTG-TGTGG---C-ATGATAAAACA-TAAt
gi|4 : ttaattttggtgtgtcatcgtcttggttcatgtatacacttgatgtagtgtgtattatttgtacacatatagtgtatgtgtaattttaggggatcagtatattgaaataccaattagctgatagtataagcttctatcagggtATTTTTGATG-TGCCATCTT-TTTTGC---T----G------TCG--AGCTTATCAATTTTGGCA----CTT-ATT--GTTCGTAAGTAAA-TTTGGGG-ATCAG-------C----TT-TA-TTG---ATATGTCATGATGTAG------TTTGTCAAT----AGT------------TTTTGCTCTG-----------------ATCCCT-TATTA-------C-AC-TTT----------G--TATATAT-TTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GA-C-A-ATT-T----T-ACT-------------CT-C---TTCAT--G-TGTGT-TGA-T-GTTATTGAT-CT----AGCTAAGC--AAAAACAGAGCTGCGCTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAA-
gi|5 : CCATCTT-TTT-GC---T----GCA-TCTTT--AAGGTTGTTT-T-ATGGTA----GTTTGATACGTT--------AA-TCTGGGGGATCAG-------CATGATT-TA-TTA---TTT-G-CAT--TGT-GACTTTCTTTC-CCATT-C-AGTGAC--------TTTTTT-ATTG-----------------ATTGTTGTG-GAGTCTGATC-CCACTT----------GGATAAATAT-GTCGTT-TAA-TTGCGTCCATTTG--ATACAATGGA-C-A-TTTAC-C-ATAACTCA---------ACCTGT---CTCAT--G-T-T-T-T-G-T-G-TA-T-AT-GC----AGC----CCAAAAAAC-TAGCTGCGGTGACCTTGCCTTAG---C-ATTTt
gi|6 : TCTTATTTTGTATGT----GCAATCTTTGTAAGGTTGTTT-TACGGGTA----GTT---T--------------------GGGGATCAG------ACAT--TG-AA-TTA---TTTTGTTAT--TGTTGA----CTTTCTCCATTTC-AGTGAT--------ATTTTCTGTCG-----------------A-TGTT-TGTG-GTCTGATCACC-CTC----------G--T-GATAG-TTTATTATAAATTTCGT-TATTTA-AATA-AAT-GA-C-A-TTT-T-CAAT-ACTTA---------AACTGC---CTCACTAGTT-T-T-TAA-----TA-TGATGGC----AG-----C--AAAAGC-TAGCTGTAAT-ATCTTG-TTC
gi|7 : -----------------ATAGTT-TTTGC-TCTGATC-CC-CTTATTACACTTTG--TATATATGTTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GA-CAA-TTT-T-C-AT--CT----------------C---TTCAT--G-TGTGT-TGA-T-GTTATTGAT-CT----ATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAtagaatt
gi|8 : aattttggcacttattgttcgtaagtaaatttaggggatcagcttattgatatgtcatgatgtagtttgtgaaTTTGTCAATA-----------------GTT-TT-TGC---TCTGATC-CC-CTTATTACACTTTG--TATATAT-TTTTTCCTAATTTGCGT-CATTTT-AATA-AAT-GACC-A-TTT-T-C-AT--CT----------------C---TTCAT--G-TGTGT-TGA-T-GTTATTGAT-CT----ATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAA
gi|9 : ttttgtgacttattgttcgtaagtaaatttaggggatcagcttattgatatgtcatgatgtag----GCA-TCATTGTAAGGTTGTTT-TTTTGGTGTTATGTTTGAT--GTT--------AA-TCTGGGG-ATCAGCTTATTAGAT-ATA-TA-TTGAAGTTTTG-CAT--TGGTGACTTTCTTTCTCCATTTCTATTGGCGAAGCATTTTTTTTTGTTGTAAATAGATCATAATGCATTGTT-TGTGAGTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAAGGGGATCAGCATATTGAAATAGCATTTTACACTGTGTTCTTAGCTCTATGTTTGATCCCCTATCAAAGATTATAGATTTCATCATTTAAAACTGTGACATGTTTCATCACTACATTGGTGTTACAT
Alignments
lowQualScore : 11 3333333 2222 1 22222 2222 11 11 222222 1 11111111 111111 2222222222222 1 2222222 1111 1 222222222 44444444444444444 11 4444444444 1 1 333333333333333333333333 222222222222222 11111 2222 1
lowQualScore : 77 3333333 4444 5 66666 3333 88 88 555555 3 2 8 0 99999999 6 1 1 6 1 555555 5 2222222222222 5 1 3333333 77 5 5 1111 1 5 77 1 1 1 5 777777777 77 00000000000000000 5 5 11 5 5 3333333333 66 11 5 3 3 5 4 99 4 4 4 2 4 4 999999999999999999999999 55 3 444444444444444 3 7 22222 3333 44 3 1 3 0 555 3 6666 0 4 6
lowQualScore : .. ....... .... . ..... .... .. .. ...... . . . . ........ . . . . . ...... . ............. . . ....... .. . . .... . . .. . . . . ......... .. ................. . . .. . . .......... .. .. . . . . . .. . . . . . . ........................ .. . ............... . . ..... .... .. . . . . ... . .... . . .
lowQualScore : 55 0000000 0000 0 00000 0000 00 55 888888 3 5 0 8 22222222 7 7 7 7 0 000000 7 4444444444444 7 4 6666666 11 7 7 7777 4 7 99 4 7 4 7 888888888 99 00000000000000000 5 0 99 7 7 8888888888 99 44 0 4 3 0 0 00 0 0 0 0 0 0 222222222222222222222222 00 6 666666666666666 6 3 44444 2222 66 3 0 1 2 888 3 8888 5 0 7
consensus : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATTT-A-TTA---TTTTG-C-AT--TGTTGACTTTCTTTCTCCATTTC-AGTGAC--------TTTTTTCGTCG-----------------ATTGTTTGT-GAGTCTGATC-CC-CTT----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GAC-A-TTT-TC-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT----NCAGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
Reference ( family-106 ) : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATTT-A-TTA---TTTTG-C-AT--TGTTGACTTTCTTTCTCCATTTC-AGTGAC--------TTTTTTCGTTG-----------------ATTGTTTGT-GAGTCTGATC-CC-CTT----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GAC-A-TTT-TC-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT----NCAGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
gi|1 : AGGAA--ATTTCAGGAAAAAAAGAATTTTTAAAACATTTGTA-TTTGTGGAAACTGATGGCATATCAAAAACTTGACC-ACCA-----GATGGTGC-ATTTT-TTTTTT---TTTCAGCA-TCTTTGCTACGTTGTTT-TTATGGTT----G-TT-GAT--GTC--------GACTTTTGGGGATCAG------ACAT-ATTGGA-TTA---TTTTTTC-AT--TGTTGACTTTCCATCTCCATTTC-AAAGAC--------ATTTTAAGTGG-----------------ATTGTTTGT-GAGTCTGATC-CC-CTT----------G--TTAGTAG-TTTGTTATAAATTTCGT-TATTTG-AATA-AAT-GAC-A--TT-TC-AT-ACTCA---------ATCTGC---CTTAT--G-T-T-TATA--T-A-T-A-T-GAT----ACAG-----C--AAAAAC-TAGTTGCGGTGACCTTG-TTCAG---C-ATTT
gi|10 : aTT-TAAATTTTGT-CATTTG-AATA-AAT-GAT-A-TTT-AC-AT-TCTCATGGTTACATATTTACATTCTTAT--GGT-T-T-TAGGT-A-T-A-T-GAT----ACAGC----C--AAAACC-TAGCAACCGTGACCATG-CTCAT---C-ATTTAAAGACA-TAAA-CAc
gi|12 : tTTTCGT-CGTTTTCAATA-AAT-GGC-ATTTT-TC-AT--CT-A---------GACTACA--CTGAT--G-T-T-------C-G-T-C-T-GAT----TGACC----C--CCCAAC-T-CCTGCAGTGAGAATG-CGCAG---C-ACAAGGAAACA-gaattatctaaacggcgt
gi|13 : gtTCAT--G-T-T-T-TAT-TTG-T-A-T-GGT----GCAGC----C--TAAAAG-TAGCTGCGGTGAACTTG-CTTAGTGAC-ATCTT--TTCATTAAA-CAATaa
gi|14 : taTGTTGTA----C-TT-GAT---CT--------GA-TCTTGTGGATCAG------ATAT-ATTT-AATTA---TTCCA-C-AT--TGTTGACTTTCTTTCTCCATTTC-AGcatt
gi|15 : ttaa--AAAAAC-TAACTGCGGTGACCTTG-CTTAG---C-AATTTAAGACA-TAAAGCAATA
gi|16 : AGCTGCGGTGACC-TG-ATTAG---CAATGTTAAGAAA-TAAA-TAA
gi|2 : cAGGAAGCATTTTAAAAAAAAAA-------TGAAA----TGTAGTTT-----AATTGAT----TAT--AAAAC--GGCCTAT--TTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTATGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------GCAT-ATTT-A-TTA---TTTTG-C-AT--TGTTGACTTTCTTTCTCCATTTC-AGTGAC--------TTTTTTCATTGC----------------ATTGTTTGT-GAGTCTGATC-CC-CTT----------G--TAAATAG-TTCGTT-TAAATTGCGT-CATTTG-AATA-AAT-GAC-A-TTT-AC-AT-ACTCA---------ACCTGT---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT----GCAGC----C--AAAAAC-TAGCTGCGGTGACCTTG-CTTAG---C-ATTTTAAGACA-TAAA-TAATAagtgtt
gi|3 : TT----------A--TAGATTT-TTCATC--ATATT-CGT-CGTTTTCAATA-AAT-GAC-ATTTT-TC-AT-CATCA---------ACAT------TAGT--G-T-T-T-CAT-T-T-G-A-T-TATCCTCTCAGC----A--AAAAACAGAGCTGCGGTGAGCTTG-TGTGG---C-ATGATAAAACA-TAAt
gi|4 : ttaattttggtgtgtcatcgtcttggttcatgtatacacttgatgtagtgtgtattatttgtacacatatagtgtatgtgtaattttaggggatcagtatattgaaataccaattagctgatagtataagcttctatcagggtATTTTTGATG-TGCCATCTT-TTTTGC---T----G------TCG--AGCTTATCAATTTTGGCA----C-TT-ATT--GTTCGTAAGTAAA-TTTGGGG-ATCAG-------C----TTT-A-TTG---ATATGTC-ATGATGTAG------TTTGTCAAT----AGT------------TTTTGCTCTG-----------------ATCCCTTAT-TA-------C-AC-TTT----------G--TATATAT-TTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GAC-A-ATT-T---T-ACT-------------CT-C---TTCAT--G-TGTGT-TGA-T-GTT-ATT-GAT----CTAGCTAAGC--AAAAACAGAGCTGCGCTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAA-
gi|5 : CCATCTT-TT-TGC---T----GCA-TCTT--TAAGGTTG-TT-TTATGGTA----GTTT-GATACGTT--------AA-TCTGGGGGATCAG-------CATGATTT-A-TTA----TTTG-C-AT--TG-TGACTTTCTTTC-CCA-TTC-AGTGAC--------TTTTTT-ATTG-----------------ATTG-TTGTGGAGTCTGATC-CCACTT----------GGATAAATAT-GTCGTT-T-AATTGCGTCCATTTG--ATACAATGGAC-A-TTTACC-ATAACTCA---------ACCTGT---CTCAT--G-T-T-T-T-G-T-G-T-A-T--AT----GCAGC----CCAAAAAAC-TAGCTGCGGTGACCTTGCCTTAG---C-ATTTt
gi|6 : TCTTATTTTGTATGT----GCAATCTTTGTAAGGTTGTTT-TACGGGTA----G-TT----------------------TGGGG-ATCAG------ACAT--TGA-A-TTA---TTTTG-TTAT--TGTTGACTTTCT----CCATTTC-AGTGAT--------ATTTTCTGTCG-----------------AT-GTTTGT-G-GTCTGATCACC-CTC----------G--T-GATAG-TTTATTATAAATTTCGT-TATTTA-AATA-AAT-GAC-A-TTT-TCAAT-ACTTA---------AACTGC---CTCACTAG-T-T-T-T---TAA-T-A-T-GATG---GCAG-----C--AAAAGC-TAGCTGTAAT-ATCTTG-TTC
gi|7 : -----------------ATAGTTTTT-GC-TCTGATC-CC-CTTATTACACTTTG--TATATATGTTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GAC-AATTT-TC-AT-----------------CT-C---TTCAT--G-TGTGT-TGA-T-G-TTA-TTGAT----CTATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAtagaatt
gi|8 : aattttggcacttattgttcgtaagtaaatttaggggatcagcttattgatatgtcatgatgtagtttgtgaaTTTGTCA-----------------ATAGTTTTT-GC-TCTGATC-CC-CTTATTACACTTTG--TATATAT-TTTTTCCTAATTTGCGT-CATTTT-AATA-AAT-GACCA-TTT-TC-AT-----------------CT-C---TTCAT--G-TGTGT-TGA-T-G-TTA-TTGAT----CTATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAA
gi|9 : ttttgtgacttattgttcgtaagtaaatttaggggatcagcttattgatatgtcatgatgtag----GCA-TCATTGTAAGGTTGTTT-TTTTGGTGTTATG-TTTGAT--GTT--------AA-TCTGGGG-ATCAGCTTATTAGAT-ATAT-A-TTGAAGTTTTG-C-AT--TGGTGACTTTCTTTCTCCATTTCTATTGGCGAAGCATTTTTTTTTGTTGTAAATAGATCATAATGCATTGTTTGT-GAGTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAAGGGGATCAGCATATTGAAATAGCATTTTACACTGTGTTCTTAGCTCTATGTTTGATCCCCTATCAAAGATTATAGATTTCATCATTTAAAACTGTGACATGTTTCATCACTACATTGGTGTTACAT
Alignments
lowQualScore : 11 3333333 2222 1 22222 2222 11 11 222222 1 11111111 111111 2222222222222 1 2222222 11111111 1111 222222222 44444444444444444 11 55555555555555555555 1 1 333333333333333333333333 222222222222222 11111 2222 1
lowQualScore : 77 3333333 4444 5 66666 3333 88 88 555555 3 2 8 0 99999999 6 1 1 6 1 555555 5 2222222222222 5 1 0000000 00000000 1111 5 5 1 5 4 5 3 777777777 9 0 00000000000000000 6 5 44 5 5 66666666666666666666 66 11 5 3 3 5 4 99 4 4 4 2 4 4 999999999999999999999999 55 3 444444444444444 3 7 22222 3333 44 3 1 3 0 555 3 6666 0 4 6
lowQualScore : .. ....... .... . ..... .... .. .. ...... . . . . ........ . . . . . ...... . ............. . . ....... ........ .... . . . . . . . ......... . . ................. . . .. . . .................... .. .. . . . . . .. . . . . . . ........................ .. . ............... . . ..... .... .. . . . . ... . .... . . .
lowQualScore : 55 0000000 0000 0 00000 0000 00 55 888888 3 5 0 8 22222222 7 7 7 7 0 000000 7 4444444444444 7 4 0000000 66666666 4444 7 7 4 1 9 7 0 888888888 9 4 00000000000000000 9 0 99 7 7 66666666666666666666 99 44 0 4 3 0 0 00 0 0 0 0 0 0 222222222222222222222222 00 6 666666666666666 6 3 44444 2222 66 3 0 1 2 888 3 8888 5 0 7
consensus : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGAC--------NTTTTTTGTCG-----------------ATNGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GAC-A-TTT-TC-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT----NCAGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
Reference ( family-106 ) : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGAC--------TTTTTTCGTCG-----------------ATTGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GAC-A-TTT-TC-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT----NCAGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
gi|1 : AGGAA--ATTTCAGGAAAAAAAGAATTTTTAAAACATTTGTA-TTTGTGGAAACTGATGGCATATCAAAAACTTGACC-ACCA-----GATGGTGC-ATTTT-TTTTTT---TTTCAGCA-TCTTTGCTACGTTGTTT-TTATGGTT----G-TT-GAT--GTC--------GACTTTTGGGGATCAG------ACAT-ATTGGA-TTA---TTTTTTC-ATTGTTGACTTTCCATCTCCATTTC-AAAGAC--------ATTTTAAGTGG-----------------ATTGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TTAGTAG-TTTGTTATAAATTTCGT-TATTTG-AATA-AAT-GAC-A--TT-TC-AT-ACTCA---------ATCTGC---CTTAT--G-T-T-TATA--T-A-T-A-T-GAT----ACAG-----C--AAAAAC-TAGTTGCGGTGACCTTG-TTCAG---C-ATTT
gi|10 : aTT-TAAATTTTGT-CATTTG-AATA-AAT-GAT-A-TTT-AC-AT-TCTCATGGTTACATATTTACATTCTTAT--GGT-T-T-TAGGT-A-T-A-T-GAT----ACAGC----C--AAAACC-TAGCAACCGTGACCATG-CTCAT---C-ATTTAAAGACA-TAAA-CAc
gi|12 : tTTTCGT-CGTTTTCAATA-AAT-GGC-ATTTT-TC-AT--CT-A---------GACTACA--CTGAT--G-T-T-------C-G-T-C-T-GAT----TGACC----C--CCCAAC-T-CCTGCAGTGAGAATG-CGCAG---C-ACAAGGAAACA-gaattatctaaacggcgt
gi|13 : gtTCAT--G-T-T-T-TAT-TTG-T-A-T-GGT----GCAGC----C--TAAAAG-TAGCTGCGGTGAACTTG-CTTAGTGAC-ATCTT--TTCATTAAA-CAATaa
gi|14 : taTGTTGTA----C-TT-GAT---CT--------GA-TCTTGTGGATCAG------ATAT-ATTT-AATTA---TTCCA-C-ATTGTTGACTTTCTTTCTCCATTTC-AGcatt
gi|15 : ttaa--AAAAAC-TAACTGCGGTGACCTTG-CTTAG---C-AATTTAAGACA-TAAAGCAATA
gi|16 : AGCTGCGGTGACC-TG-ATTAG---CAATGTTAAGAAA-TAAA-TAA
gi|2 : cAGGAAGCATTTTAAAAAAAAAA-------TGAAA----TGTAGTTT-----AATTGAT----TAT--AAAAC--GGCCTAT--TTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTATGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------GCAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGAC--------TTTTTTCATTGC----------------ATTGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TAAATAG-TTCGTT-TAAATTGCGT-CATTTG-AATA-AAT-GAC-A-TTT-AC-AT-ACTCA---------ACCTGT---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT----GCAGC----C--AAAAAC-TAGCTGCGGTGACCTTG-CTTAG---C-ATTTTAAGACA-TAAA-TAATAagtgtt
gi|3 : T---------T----------A--TAGATTT-TTCATC--ATATT-CGT-CGTTTTCAATA-AAT-GAC-ATTTT-TC-AT-CATCA---------ACAT------TAGT--G-T-T-T-CAT-T-T-G-A-T-TATCCTCTCAGC----A--AAAAACAGAGCTGCGGTGAGCTTG-TGTGG---C-ATGATAAAACA-TAAt
gi|4 : ttaattttggtgtgtcatcgtcttggttcatgtatacacttgatgtagtgtgtattatttgtacacatatagtgtatgtgtaattttaggggatcagtatattgaaataccaattagctgatagtataagcttctatcagggtATTTTTGATG-TGCCATCTT-TTTTGC---T----G------TCG--AGCTTATCAATTTTGGCA----C-TT-ATT--GTTCGTAAGTAAA-TTTGGGG-ATCA-----------------------------G-C-TTTATTGAT-----------ATGTC-A-TGAT--------GTAGTTTGTCA-----------------ATAGTTTTT-GC-TCTGATC-CC-TTATTACACTTT----------G--TATATAT-TTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GAC-A-ATT-T---T-ACT-------------CT-C---TTCAT--G-TGTGT-TGA-T-GTT-ATT-GAT----CTAGCTAAGC--AAAAACAGAGCTGCGCTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAA-
gi|5 : CCATCTT-TT-TGC---T----GCA-TCTT--TAAGGTTG-TT-TTATGGTA----GTTT-GATACGTT--------AA-TCTGGGGGATCAG-------CATGATTT-A-TTA----TTTG-C-ATTG-TGACTTTCTTTC-CCA-TTC-AGTGAC--------TTTTTT-ATTG-----------------ATTG-TTGTGGAGTCTGATC-CCACT---------T----------GGATAAATAT-GTCGTT-T-AATTGCGTCCATTTG--ATACAATGGAC-A-TTTACC-ATAACTCA---------ACCTGT---CTCAT--G-T-T-T-T-G-T-G-T-A-T--AT----GCAGC----CCAAAAAAC-TAGCTGCGGTGACCTTGCCTTAG---C-ATTTt
gi|6 : TCTTATTTTGTATGT----GCAATCTTTGTAAGGTTGTTT-TACGGGTA----G-TT----------------------TGGGG-ATCAG------ACAT--TGA-A-TTA---TTTTG-TTATTGTTGACTTTCT----CCATTTC-AGTGAT--------ATTTTCTGTCG-----------------AT-GTTTGT-G-GTCTGATCACC-CT---------C----------G--T-GATAG-TTTATTATAAATTTCGT-TATTTA-AATA-AAT-GAC-A-TTT-TCAAT-ACTTA---------AACTGC---CTCACTAG-T-T-T-T---TAA-T-A-T-GATG---GCAG-----C--AAAAGC-TAGCTGTAAT-ATCTTG-TTC
gi|7 : -----------------ATAGTTTTT-GC-TCTGATC-CC-CT---------TATTACACTTTG--TATATATGTTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GAC-AATTT-TC-AT-----------------CT-C---TTCAT--G-TGTGT-TGA-T-G-TTA-TTGAT----CTATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAtagaatt
gi|8 : aattttggcacttattgttcgtaagtaaatttaggggatcagcttattgatatgtcatgatgtagtttgtgaaTTTGTCA-----------------ATAGTTTTT-GC-TCTGATC-CC-CT---------TATTACACTTTG--TATATAT-TTTTTCCTAATTTGCGT-CATTTT-AATA-AAT-GACCA-TTT-TC-AT-----------------CT-C---TTCAT--G-TGTGT-TGA-T-G-TTA-TTGAT----CTATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAA
gi|9 : ttttgtgacttattgttcgtaagtaaatttaggggatcagcttattgatatgtcatgatgtag----GCA-TCATTGTAAGGTTGTTT-TTTTGGTGTTATG-TTTGAT--GTT--------AA-TCTGGGG-ATCAGCTTATTAGAT-ATAT-A-TTGAAGTTTTG-C-ATTGGTGACTTTCTTTCTCCATTTCTATTGGCGAAGCATTTTTTTTTGTTGTAAATAGATCATAATGCATTGTTTGT-GAGTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAAGGGGATCAGCATATTGAAATAGCATTTTACACTGTGTTCTTAGCTCTATGTTTGATCCCCTATCAAAGATTATAGATTTCATCATTTAAAACTGTGACATGTTTCATCACTACATTGGTGTTACAT
Alignments
lowQualScore : 11 3333333 2222 1 22222 2222 11 11 222222 1 11111111 111111 2222222222222 1 2222222 11111 1 222222222 44444444444444444 11 55555555555555555555 1 11 44444444444444444444 3333333333333 1 2222 1
lowQualScore : 77 3333333 4444 5 66666 3333 88 88 555555 3 2 8 0 99999999 6 1 1 6 1 555555 5 2222222222222 5 1 3333333 77 5 5 11111 777 4 222 1 4 1 444444444 0 5 00000000000000000 66 5 5 44 5 5 66666666666666666666 66 11 5 3 3 5 4 99 4 4 4 4 4 555 4 44 11111111111111111111 55 3 1111111111111 0 9999999 3333 44 3 1 3 0 555 3 6666 0 4 6
lowQualScore : .. ....... .... . ..... .... .. .. ...... . . . . ........ . . . . . ...... . ............. . . ....... .. . . ..... ... . ... . . . ......... . . ................. .. . . .. . . .................... .. .. . . . . . .. . . . . . ... . .. .................... .. . ............. . ....... .... .. . . . . ... . .... . . .
lowQualScore : 55 0000000 0000 0 00000 0000 00 55 888888 3 5 0 8 22222222 7 7 7 7 0 000000 7 4444444444444 7 4 6666666 11 7 7 66666 333 9 333 4 4 2 000000000 8 4 00000000000000000 99 9 0 99 7 7 66666666666666666666 99 44 0 4 3 0 0 00 0 0 0 0 0 777 0 77 00000000000000000000 00 6 5555555555555 9 0000000 2222 66 3 0 1 2 888 3 8888 5 0 7
consensus : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGAC--------GTTTTTTGTCG-----------------A--TNGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GA-C-A-TTT-T-C-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAG-T-G-TA-TGAT-NC----AGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
Reference ( family-106 ) : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGAC--------NTTTTTTGTCG-----------------A--TNGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GA-C-A-TTT-T-C-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAG-T-G-TA-TGAT-NC----AGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
gi|1 : AGGAA--ATTTCAGGAAAAAAAGAATTTTTAAAACATTTGTA-TTTGTGGAAACTGATGGCATATCAAAAACTTGACC-ACCA-----GATGGTGC-ATTTT-TTTTTT---TTTCAGCA-TCTTTGCTACGTTGTTT-TTATGGTT----G-TT-GAT--GTC--------GACTTTTGGGGATCAG------ACAT-ATTGGA-TTA---TTTTTTC-ATTGTTGACTTTCCATCTCCATTTC-AAAGAC--------ATTTTAAGTGG-----------------A--TTGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TTAGTAG-TTTGTTATAAATTTCGT-TATTTG-AATA-AAT-GA-C-A--TT-T-C-AT-ACTCA---------ATCTGC---CTTAT--G-T-T-TATA--T-A-TA-TGAT-AC----AG-----C--AAAAAC-TAGTTGCGGTGACCTTG-TTCAG---C-ATTT
gi|10 : aTT-TAAATTTTGT-CATTTG-AATA-AAT-GA-T-A-TTT-A-C-AT-TCTCATGGTTACATATTTACATTCTTAT--GGT-T-T-TAGGT-A-TA-TGAT-AC----AGC----C--AAAACC-TAGCAACCGTGACCATG-CTCAT---C-ATTTAAAGACA-TAAA-CAc
gi|12 : tTTTCGT-CGTTTTCAATA-AAT-GG-C-ATTTT-T-C-AT--CT-A---------GACTACA--CTGAT--G-T-T-------C-G-TC-TGAT-TG----ACC----C--CCCAAC-T-CCTGCAGTGAGAATG-CGCAG---C-ACAAGGAAACA-gaattatctaaacggcgt
gi|13 : gtTCAT--G-T-T-T-TAT-TTG-TA-TGGT-GC----AGC----C--TAAAAG-TAGCTGCGGTGAACTTG-CTTAGTGAC-ATCTT--TTCATTAAA-CAATaa
gi|14 : taTGTTGTA----C-TT-GAT---CT--------GA-TCTTGTGGATCAG------ATAT-ATTT-AATTA---TTCCA-C-ATTGTTGACTTTCTTTCTCCATTTC-AGcatt
gi|15 : ttaa--AAAAAC-TAACTGCGGTGACCTTG-CTTAG---C-AATTTAAGACA-TAAAGCAATA
gi|16 : AGCTGCGGTGACC-TG-ATTAG---CAATGTTAAGAAA-TAAA-TAA
gi|2 : cAGGAAGCATTTTAAAAAAAAAA-------TGAAA----TGTAGTTT-----AATTGAT----TAT--AAAAC--GGCCTAT--TTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTATGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------GCAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGAC--------TTTTTTCATTGC----------------A--TTGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TAAATAG-TTCGTT-TAAATTGCGT-CATTTG-AATA-AAT-GA-C-A-TTT-A-C-AT-ACTCA---------ACCTGT---CTCAT--G-T-T-T-TAG-T-G-TA-TGAT-GC----AGC----C--AAAAAC-TAGCTGCGGTGACCTTG-CTTAG---C-ATTTTAAGACA-TAAA-TAATAagtgtt
gi|3 : T---------T----------A--TAGATTT-TTCATC--ATATT-CGT-CGTTTTCAATA-AAT-GA-C-A-TTT-TTC-AT-CATCA---------ACAT------TAGT--G-T-T-T-CAT-T-T-GA-TTAT-CCTCTCAGC----A--AAAAACAGAGCTGCGGTGAGCTTG-TGTGG---C-ATGATAAAACA-TAAt
gi|4 : ttaattttggtgtgtcatcgtcttggttcatgtatacacttgatgtagtgtgtattatttgtacacatatagtgtatgtgtaattttaggggatcagtatattgaaataccaattagctgatagtataagcttctatcagggtATTTTTGATG-TGCCATCTT-TTTTGC---T----G------TCG--AGCTTATCAATTTTGGCA----C-TT-ATT--GTTCGTAAGTAAA-TTTGGGG-ATCAG-------C----TTT-A-TT------------------GAT-----------ATGTC-A-TGAT--------GTAGTTTGTCA-----------------A--TAGTTTTT-GC-TCTGATC-CC-TTATTACACTTT----------G--TATATAT-TTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GA-C-A-ATT-T----T-ACT-------------CT-C---TTCAT--G-TGTGT-TGA-T-GTTATTGAT-CT----AGCTAAGC--AAAAACAGAGCTGCGCTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAA-
gi|5 : CCATCTT-TT-TGC---T----GCA-TCTT--TAAGGTTG-TT-TTATGGTA----GTTT-GATACGTT--------AA-TCTGGGGGATCAG-------CATGATTT-A-TTA----TTTG-C-ATTG-TGACTTTCTTTC-CCA-TTC-AGTGAC---------TTTTTTATTG-----------------A--TTG-TTGTGGAGTCTGATC-CCACT---------T----------GGATAAATAT-GTCGTT-T-AATTGCGTCCATTTG--ATACAATGGA-C-A-TTTAC-C-ATAACTCA---------ACCTGT---CTCAT--G-T-T-T-T-G-T-G-TA-T-AT-GC----AGC----CCAAAAAAC-TAGCTGCGGTGACCTTGCCTTAG---C-ATTTt
gi|6 : TCTTATTTTGTATGT----GCAATCTTTGTAAGGTTGTTT-TACGGGTA----G-TT----------------------TGGGG-ATCAG------ACAT--TGA-A-TTA---TTTTG-TTATTGTTGACTTT----CTCCATTTC-AGTGAT--------ATTTTCTGTCG-----------------A--T-GTTTGT-G-GTCTGATCACC-CT---------C----------G--T-GATAG-TTTATTATAAATTTCGT-TATTTA-AATA-AAT-GA-C-A-TTT-T-CAAT-ACTTA---------AACTGC---CTCACTAG-T-T-T-T---TAA-TA-TGATGGC----AG-----C--AAAAGC-TAGCTGTAAT-ATCTTG-TTC
gi|7 : ATGTC-A-TGAT--------GTAGTTTGT-G-----------------AAATAGTTTTT-GC-TCTGATC-CC-CT---------TATTACACTTTG--TATATATGTTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GA-CAA-TTT-T-C-AT--CT----------------C---TTCAT--G-TGTGT-TGA-T-GTTATTGAT-CT----ATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAtagaatt
gi|8 : aattttggcacttattgttcgtaagtaaatttaggggatcagcttattgatATGTC-A-TGAT--------GTAGTTTGTCA-----------------A--TAGTTTTT-GC-TCTGATC-CC-CT---------TATTACACTTTG--TATATAT-TTTTTCCTAATTTGCGT-CATTTT-AATA-AAT-GACC-A-TTT-T-C-AT--CT----------------C---TTCAT--G-TGTGT-TGA-T-GTTATTGAT-CT----ATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAA
gi|9 : ttttgtgacttattgttcgtaagtaaatttaggggatcagcttattgat----GCA-TCATTGTAAGGTTGTTT-TTTTGGTGTTATG-TTTGAT--GTT--------AA-TCTGGGG-ATCAGCTTATTAGAT-ATAT-A-TTGAAGTTTTG-C-ATTGGTGACTTTCTTTCTCCATTTCTATTGGCGAAGCATTTTTTTTTGTTGTAAATAGATCATAATGCA--TTGTTTGT-GAGTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAAGGGGATCAGCATATTGAAATAGCATTTTACACTGTGTTCTTAGCTCTATGTTTGATCCCCTATCAAAGATTATAGATTTCATCATTTAAAACTGTGACATGTTTCATCACTACATTGGTGTTACAT
Alignments
lowQualScore : 11 3333333 2222 1 22222 2222 11 11 222222 1 11111111 111111 2222222222222 1 2222222 11111 1 222222222 44444444444444444 11 55555555555555555555 1 333333333333333333333333 222222222222222 2222 1
lowQualScore : 77 3333333 4444 5 66666 3333 88 88 555555 3 2 8 0 99999999 6 1 1 6 1 555555 5 2222222222222 5 1 3333333 77 5 5 11111 777 4 222 1 4 1 111111111 0 5 00000000000000000 66 5 5 44 5 5 66666666666666666666 66 11 5 3 3 5 4 99 4 4 4 8 555 4 999999999999999999999999 55 3 444444444444444 3 7 9999999 3333 44 3 1 3 0 555 3 6666 0 4 6
lowQualScore : .. ....... .... . ..... .... .. .. ...... . . . . ........ . . . . . ...... . ............. . . ....... .. . . ..... ... . ... . . . ......... . . ................. .. . . .. . . .................... .. .. . . . . . .. . . . . ... . ........................ .. . ............... . . ....... .... .. . . . . ... . .... . . .
lowQualScore : 55 0000000 0000 0 00000 0000 00 55 888888 3 5 0 8 22222222 7 7 7 7 0 000000 7 4444444444444 7 4 6666666 11 7 7 66666 333 9 333 4 4 2 555555555 8 4 00000000000000000 99 9 0 99 7 7 66666666666666666666 99 44 0 4 3 0 0 00 0 0 0 0 777 0 222222222222222222222222 00 6 666666666666666 6 3 0000000 2222 66 3 0 1 2 888 3 8888 5 0 7
consensus : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGACG--------TTTTTTGTCG-----------------A--TNGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GAC-A-TTT-T-C-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT-NC----AGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
Reference ( family-106 ) : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGACG--------TTTTTTGTCG-----------------A--TNGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GAC-A-TTT-T-C-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT-NC----AGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
gi|1 : AGGAA--ATTTCAGGAAAAAAAGAATTTTTAAAACATTTGTA-TTTGTGGAAACTGATGGCATATCAAAAACTTGACC-ACCA-----GATGGTGC-ATTTT-TTTTTT---TTTCAGCA-TCTTTGCTACGTTGTTT-TTATGGTT----G-TT-GAT--GTC--------GACTTTTGGGGATCAG------ACAT-ATTGGA-TTA---TTTTTTC-ATTGTTGACTTTCCATCTCCATTTC-AAAGACA--------TTTTAAGTGG-----------------A--TTGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TTAGTAG-TTTGTTATAAATTTCGT-TATTTG-AATA-AAT-GAC-A--TT-T-C-AT-ACTCA---------ATCTGC---CTTAT--G-T-T-TATA--T-A-T-A-T-GAT-AC----AG-----C--AAAAAC-TAGTTGCGGTGACCTTG-TTCAG---C-ATTT
gi|10 : aTT-TAAATTTTGT-CATTTG-AATA-AAT-GAT-A-TTT-A-C-AT-TCTCATGGTTACATATTTACATTCTTAT--GGT-T-T-TAGGT-A-T-A-T-GAT-AC----AGC----C--AAAACC-TAGCAACCGTGACCATG-CTCAT---C-ATTTAAAGACA-TAAA-CAc
gi|12 : tTTTCGT-CGTTTTCAATA-AAT-GGC-ATTTT-T-C-AT--CT-A---------GACTACA--CTGAT--G-T-T-------C-G-T-C-T-GAT-TG----ACC----C--CCCAAC-T-CCTGCAGTGAGAATG-CGCAG---C-ACAAGGAAACA-gaattatctaaacggcgt
gi|13 : gtTCAT--G-T-T-T-TAT-TTG-T-A-T-GGT-GC----AGC----C--TAAAAG-TAGCTGCGGTGAACTTG-CTTAGTGAC-ATCTT--TTCATTAAA-CAATaa
gi|14 : taTGTTGTA----C-TT-GAT---CT--------GA-TCTTGTGGATCAG------ATAT-ATTT-AATTA---TTCCA-C-ATTGTTGACTTTCTTTCTCCATTTC-AGcatt
gi|15 : ttaa--AAAAAC-TAACTGCGGTGACCTTG-CTTAG---C-AATTTAAGACA-TAAAGCAATA
gi|16 : AGCTGCGGTGACC-TG-ATTAG---CAATGTTAAGAAA-TAAA-TAA
gi|2 : cAGGAAGCATTTTAAAAAAAAAA-------TGAAA----TGTAGTTT-----AATTGAT----TAT--AAAAC--GGCCTAT--TTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTATGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------GCAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGACT--------TTTTTCATTGC----------------A--TTGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TAAATAG-TTCGTT-TAAATTGCGT-CATTTG-AATA-AAT-GAC-A-TTT-A-C-AT-ACTCA---------ACCTGT---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT-GC----AGC----C--AAAAAC-TAGCTGCGGTGACCTTG-CTTAG---C-ATTTTAAGACA-TAAA-TAATAagtgtt
gi|3 : T---------T----------A--TAGATTT-TTCATC--ATATT-CGT-CGTTTTCAATA-AAT-GAC-A-TTT-TTC-AT-CATCA---------ACAT------TAGT--G-T-T-T-CAT-T-T-G-A-T-TAT-CCTCTCAGC----A--AAAAACAGAGCTGCGGTGAGCTTG-TGTGG---C-ATGATAAAACA-TAAt
gi|4 : ttaattttggtgtgtcatcgtcttggttcatgtatacacttgatgtagtgtgtattatttgtacacatatagtgtatgtgtaattttaggggatcagtatattgaaataccaattagctgatagtataagcttctatcagggtATTTTTGATG-TGCCATCTT-TTTTGC---T----G------TCG--AGCTTATCAATTTTGGCA----C-TT-ATT--GTTCGTAAGTAAA-TTTGGGG-ATCAG-------C----TTT-A-TT------------------GAT-----------ATGTC-A-TGATG--------TAGTTTGTCA-----------------A--TAGTTTTT-GC-TCTGATC-CC-TTATTACACTTT----------G--TATATAT-TTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GAC-A-ATT-T----T-ACT-------------CT-C---TTCAT--G-TGTGT-TGA-T-GTT-ATT-GAT-CT----AGCTAAGC--AAAAACAGAGCTGCGCTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAA-
gi|5 : CCATCTT-TT-TGC---T----GCA-TCTT--TAAGGTTG-TT-TTATGGTA----GTTT-GATACGTT--------AA-TCTGGGGGATCAG-------CATGATTT-A-TTA----TTTG-C-ATTG-TGACTTTCTTTC-CCA-TTC-AGTGAC---------TTTTTTATTG-----------------A--TTG-TTGTGGAGTCTGATC-CCACT---------T----------GGATAAATAT-GTCGTT-T-AATTGCGTCCATTTG--ATACAATGGAC-A-TTTAC-C-ATAACTCA---------ACCTGT---CTCAT--G-T-T-T-T-G-T-G-T-A-T--AT-GC----AGC----CCAAAAAAC-TAGCTGCGGTGACCTTGCCTTAG---C-ATTTt
gi|6 : TCTTATTTTGTATGT----GCAATCTTTGTAAGGTTGTTT-TACGGGTA----G-TT----------------------TGGGG-ATCAG------ACAT--TGA-A-TTA---TTTTG-TTATTGTTGACTTT----CTCCATTTC-AGTGATA--------TTTTCTGTCG-----------------A--T-GTTTGT-G-GTCTGATCACC-CT---------C----------G--T-GATAG-TTTATTATAAATTTCGT-TATTTA-AATA-AAT-GAC-A-TTT-T-CAAT-ACTTA---------AACTGC---CTCACTAG-T-T-T-T---TAA-T-A-T-GATGGC----AG-----C--AAAAGC-TAGCTGTAAT-ATCTTG-TTC
gi|7 : ATGTC-A-TGATG--------TAGTTTGT-G-----------------AAATAGTTTTT-GC-TCTGATC-CC-CT---------TATTACACTTTG--TATATATGTTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GAC-AATTT-T-C-AT-----------------CT-C---TTCAT--G-TGTGT-TGA-T-G-TTA-TTGAT-CT----ATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAtagaatt
gi|8 : aattttggcacttattgttcgtaagtaaatttaggggatcagcttattgatATGTC-A-TGATG--------TAGTTTGTCA-----------------A--TAGTTTTT-GC-TCTGATC-CC-CT---------TATTACACTTTG--TATATAT-TTTTTCCTAATTTGCGT-CATTTT-AATA-AAT-GACCA-TTT-T-C-AT-----------------CT-C---TTCAT--G-TGTGT-TGA-T-G-TTA-TTGAT-CT----ATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAA
gi|9 : ttttgtgacttattgttcgtaagtaaatttaggggatcagcttattgat----GCA-TCATTGTAAGGTTGTTT-TTTTGGTGTTATG-TTTGAT--GTT--------AA-TCTGGGG-ATCAGCTTATTAGAT-ATAT-A-TTGAAGTTTTG-C-ATTGGTGACTTTCTTTCTCCATTTCTATTGGCGAAGCATTTTTTTTTGTTGTAAATAGATCATAATGCA--TTGTTTGT-GAGTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAAGGGGATCAGCATATTGAAATAGCATTTTACACTGTGTTCTTAGCTCTATGTTTGATCCCCTATCAAAGATTATAGATTTCATCATTTAAAACTGTGACATGTTTCATCACTACATTGGTGTTACAT
Alignments
lowQualScore : 11 3333333 2222 1 22222 2222 11 11 222222 1 11111111 111111 2222222222222 1 2222222 11111 1 222222222 44444444444444444 11 55555555555555555555 1 333333333333333333333333 222222222222222 2222 1
lowQualScore : 77 3333333 4444 5 66666 3333 88 88 555555 3 2 8 0 99999999 6 1 1 6 1 555555 5 2222222222222 5 1 3333333 77 5 5 11111 777 4 222 1 4 1 111111111 0 5 00000000000000000 66 5 5 44 5 5 66666666666666666666 66 11 5 3 3 5 4 99 4 4 4 8 555 4 999999999999999999999999 55 3 444444444444444 3 7 9999999 3333 44 3 1 3 0 555 3 6666 0 4 6
lowQualScore : .. ....... .... . ..... .... .. .. ...... . . . . ........ . . . . . ...... . ............. . . ....... .. . . ..... ... . ... . . . ......... . . ................. .. . . .. . . .................... .. .. . . . . . .. . . . . ... . ........................ .. . ............... . . ....... .... .. . . . . ... . .... . . .
lowQualScore : 55 0000000 0000 0 00000 0000 00 55 888888 3 5 0 8 22222222 7 7 7 7 0 000000 7 4444444444444 7 4 6666666 11 7 7 66666 333 9 333 4 4 2 555555555 8 4 00000000000000000 99 9 0 99 7 7 66666666666666666666 99 44 0 4 3 0 0 00 0 0 0 0 777 0 222222222222222222222222 00 6 666666666666666 6 3 0000000 2222 66 3 0 1 2 888 3 8888 5 0 7
consensus : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGACG--------TTTTTTGTCG-----------------A--TNGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GAC-A-TTT-T-C-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT-NC----AGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
Reference ( family-106 ) : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGACG--------TTTTTTGTCG-----------------A--TNGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GAC-A-TTT-T-C-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT-NC----AGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
gi|1 : AGGAA--ATTTCAGGAAAAAAAGAATTTTTAAAACATTTGTA-TTTGTGGAAACTGATGGCATATCAAAAACTTGACC-ACCA-----GATGGTGC-ATTTT-TTTTTT---TTTCAGCA-TCTTTGCTACGTTGTTT-TTATGGTT----G-TT-GAT--GTC--------GACTTTTGGGGATCAG------ACAT-ATTGGA-TTA---TTTTTTC-ATTGTTGACTTTCCATCTCCATTTC-AAAGACA--------TTTTAAGTGG-----------------A--TTGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TTAGTAG-TTTGTTATAAATTTCGT-TATTTG-AATA-AAT-GAC-A--TT-T-C-AT-ACTCA---------ATCTGC---CTTAT--G-T-T-TATA--T-A-T-A-T-GAT-AC----AG-----C--AAAAAC-TAGTTGCGGTGACCTTG-TTCAG---C-ATTT
gi|10 : aTT-TAAATTTTGT-CATTTG-AATA-AAT-GAT-A-TTT-A-C-AT-TCTCATGGTTACATATTTACATTCTTAT--GGT-T-T-TAGGT-A-T-A-T-GAT-AC----AGC----C--AAAACC-TAGCAACCGTGACCATG-CTCAT---C-ATTTAAAGACA-TAAA-CAc
gi|12 : tTTTCGT-CGTTTTCAATA-AAT-GGC-ATTTT-T-C-AT--CT-A---------GACTACA--CTGAT--G-T-T-------C-G-T-C-T-GAT-TG----ACC----C--CCCAAC-T-CCTGCAGTGAGAATG-CGCAG---C-ACAAGGAAACA-gaattatctaaacggcgt
gi|13 : gtTCAT--G-T-T-T-TAT-TTG-T-A-T-GGT-GC----AGC----C--TAAAAG-TAGCTGCGGTGAACTTG-CTTAGTGAC-ATCTT--TTCATTAAA-CAATaa
gi|14 : taTGTTGTA----C-TT-GAT---CT--------GA-TCTTGTGGATCAG------ATAT-ATTT-AATTA---TTCCA-C-ATTGTTGACTTTCTTTCTCCATTTC-AGcatt
gi|15 : ttaa--AAAAAC-TAACTGCGGTGACCTTG-CTTAG---C-AATTTAAGACA-TAAAGCAATA
gi|16 : AGCTGCGGTGACC-TG-ATTAG---CAATGTTAAGAAA-TAAA-TAA
gi|2 : cAGGAAGCATTTTAAAAAAAAAA-------TGAAA----TGTAGTTT-----AATTGAT----TAT--AAAAC--GGCCTAT--TTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTATGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------GCAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGACT--------TTTTTCATTGC----------------A--TTGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TAAATAG-TTCGTT-TAAATTGCGT-CATTTG-AATA-AAT-GAC-A-TTT-A-C-AT-ACTCA---------ACCTGT---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT-GC----AGC----C--AAAAAC-TAGCTGCGGTGACCTTG-CTTAG---C-ATTTTAAGACA-TAAA-TAATAagtgtt
gi|3 : T---------T----------A--TAGATTT-TTCATC--ATATT-CGT-CGTTTTCAATA-AAT-GAC-A-TTT-TTC-AT-CATCA---------ACAT------TAGT--G-T-T-T-CAT-T-T-G-A-T-TAT-CCTCTCAGC----A--AAAAACAGAGCTGCGGTGAGCTTG-TGTGG---C-ATGATAAAACA-TAAt
gi|4 : ttaattttggtgtgtcatcgtcttggttcatgtatacacttgatgtagtgtgtattatttgtacacatatagtgtatgtgtaattttaggggatcagtatattgaaataccaattagctgatagtataagcttctatcagggtATTTTTGATG-TGCCATCTT-TTTTGC---T----G------TCG--AGCTTATCAATTTTGGCA----C-TT-ATT--GTTCGTAAGTAAA-TTTGGGG-ATCAG-------C----TTT-A-TT------------------GAT-----------ATGTC-A-TGATG--------TAGTTTGTCA-----------------A--TAGTTTTT-GC-TCTGATC-CC-TTATTACACTTT----------G--TATATAT-TTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GAC-A-ATT-T----T-ACT-------------CT-C---TTCAT--G-TGTGT-TGA-T-GTT-ATT-GAT-CT----AGCTAAGC--AAAAACAGAGCTGCGCTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAA-
gi|5 : CCATCTT-TT-TGC---T----GCA-TCTT--TAAGGTTG-TT-TTATGGTA----GTTT-GATACGTT--------AA-TCTGGGGGATCAG-------CATGATTT-A-TTA----TTTG-C-ATTG-TGACTTTCTTTC-CCA-TTC-AGTGAC---------TTTTTTATTG-----------------A--TTG-TTGTGGAGTCTGATC-CCACT---------T----------GGATAAATAT-GTCGTT-T-AATTGCGTCCATTTG--ATACAATGGAC-A-TTTAC-C-ATAACTCA---------ACCTGT---CTCAT--G-T-T-T-T-G-T-G-T-A-T--AT-GC----AGC----CCAAAAAAC-TAGCTGCGGTGACCTTGCCTTAG---C-ATTTt
gi|6 : TCTTATTTTGTATGT----GCAATCTTTGTAAGGTTGTTT-TACGGGTA----G-TT----------------------TGGGG-ATCAG------ACAT--TGA-A-TTA---TTTTG-TTATTGTTGACTTT----CTCCATTTC-AGTGATA--------TTTTCTGTCG-----------------A--T-GTTTGT-G-GTCTGATCACC-CT---------C----------G--T-GATAG-TTTATTATAAATTTCGT-TATTTA-AATA-AAT-GAC-A-TTT-T-CAAT-ACTTA---------AACTGC---CTCACTAG-T-T-T-T---TAA-T-A-T-GATGGC----AG-----C--AAAAGC-TAGCTGTAAT-ATCTTG-TTC
gi|7 : ATGTC-A-TGATG--------TAGTTTGT-G-----------------AAATAGTTTTT-GC-TCTGATC-CC-CT---------TATTACACTTTG--TATATATGTTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GAC-AATTT-T-C-AT-----------------CT-C---TTCAT--G-TGTGT-TGA-T-G-TTA-TTGAT-CT----ATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAtagaatt
gi|8 : aattttggcacttattgttcgtaagtaaatttaggggatcagcttattgatATGTC-A-TGATG--------TAGTTTGTCA-----------------A--TAGTTTTT-GC-TCTGATC-CC-CT---------TATTACACTTTG--TATATAT-TTTTTCCTAATTTGCGT-CATTTT-AATA-AAT-GACCA-TTT-T-C-AT-----------------CT-C---TTCAT--G-TGTGT-TGA-T-G-TTA-TTGAT-CT----ATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAA
gi|9 : ttttgtgacttattgttcgtaagtaaatttaggggatcagcttattgat----GCA-TCATTGTAAGGTTGTTT-TTTTGGTGTTATG-TTTGAT--GTT--------AA-TCTGGGG-ATCAGCTTATTAGAT-ATAT-A-TTGAAGTTTTG-C-ATTGGTGACTTTCTTTCTCCATTTCTATTGGCGAAGCATTTTTTTTTGTTGTAAATAGATCATAATGCA--TTGTTTGT-GAGTCT
blockSeqs : GC . . G . . . . TATT . C A ATGT A T T A G TTATG T GTTCGTAAGTA . G CTTATTA GA . A GAAGT TT T CTT T T G GAAGCATTT T TAAATAGATCATAATGC AA T G AG A A TATTACACTTT GA AA G G A T C TC C G C T TT A TCTCATGGTTACATATTTACATT TA G GTGTTGATGTT T T CCTCTC TAAG CA A C C TGA A AAGG T G
blockSeqs : . C . T . C T . A GT . ACGTT . G A A . . AT C T CTT T . G T C C . A . AG . . TATTACACTTT . AG . A C T . TC . . . A AC . AACTCAACCTGT . . GTGTTGATGTT . T GGC TAAG . A G . . . TTTA . .
blockSeqs : C . T . T T . T C . GTT . G G A . . AT C T CTT T . G G T . . T . AG . . ATTACACTTT . AT . T . G . G . . . . A . ACTCAACCTGT . . GTGTTGATGTT . . AC TAAG . A A . . . GTTA . .
blockSeqs : . T . T T . A G . GTT . . A A . . AT C G CTT T . G A C . . A . C . . T . AA . G . G . G . . . . T . ACTTAAACTGC . . TTTAGGTAT . . TG . . A C . . . TTTA . .
blockSeqs : . . . . C C . CT . . . . . . A C . . . . T G C . . A . G . . T . AT . A . G . T . . . . A . CTAGACTACA . . TTTATTTGT . . GC . . . C . . . GATA . .
blockSeqs : T G . . . . . . . . . . . . . . . G T . . T . C . . T . AT . T . T . G . . . . T . CATCAACAT . . TTTAGTGT . . GC . . . C . . . GAGG .
blockSeqs : . . . . . . . . C C . G . T . G . A . . . . T . ACTCTC . . TTCATTTG . . CT . . . G . . . GAGG .
blockSeqs : . . . G . T . . . . T . CTC . . TTTGTGT . . GC . . . G . . . GAGG .
blockSeqs : . . T . . . . T . CTC . . TTTTAAT . . CT . . . C . . . CTT .
blockSeqs : . . TCGT . . CT . . . T . . .
blockSeqs : . . G . . .
blockSeqs : G .
blockSeqCons : T******* C** C* TTNATGTGT******
originalCons : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATTT-A-TTA---TTTTG-C-ATTGTTGACTTTCTTTCTCCATTTC-AGTGACG--------TTTTTTGTCG-----------------A--TNGTTTGT-GAGTCTGATC-CC-CT---------T----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GAC-A-TTT-T-C-AT-ACTCA---------ACCTGC---CTCAT--G-T-T-T-TAG-T-G-T-A-T-GAT-NC----AGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
finalCons : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGATG-TGCCATCTT-TTTTGCT-------GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATTT-A-TTA---TTTTGC--ATTGTTGACTTTCTTTCTCCATTTC-AGTGACG--------TTTTTTGTCG-----------------A--TNGTTTGT-GC-TCTGATC-CC-CT---------T----------G--TANATAT-TTCGTC-TAAATTGCGT-CATTTN-AATA-AAT-GAC-A-TTT-T-C-AT-ACTCA---------ACCTGC---CTCAT--G-TTTNATGTGT------A-T-GAT-NC----AGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAAGGGGATCAGCATATTGAAATAGCATTTTACACTGTGTTCTTAGCTCTATGTTTGATCCCCTATCAAAGATTATAGATTTCATCATTTAAAACTGTGACATGTTTCATCACTACATTGGTGTTACAT
Alignments
lowQualScore : 11 3333333 2222 1 22222 2222 11 11 222222 1 11111111 111111 2222222222222 1 2222222 11111 1 222222222 222 4444444444444444444444444444444 111 11 44444444444444444444 111 1 2222 1
lowQualScore : 77 3333333 4444 5 66666 3333 88 88 555555 3 2 8 0 99999999 6 1 1 6 1 555555 5 2222222222222 5 1 3333333 77 5 5 77777 5 4 222 1 4 1 111111111 0 5 5 77 6 0 333 5 5 7777777777777777777777777777777 66 11 5 3 222 5 4 99 4 4 4 4 4 555 4 44 11111111111111111111 7777 3 999 9 6 0 1 7777 3333 44 3 1 3 0 555 3 6666 0 4 6
lowQualScore : .. ....... .... . ..... .... .. .. ...... . . . . ........ . . . . . ...... . ............. . . ....... .. . . ..... . . ... . . . ......... . . . .. . . ... . . ............................... .. .. . . ... . . .. . . . . . ... . .. .................... .... . ... . . . . .... .... .. . . . . ... . .... . . .
lowQualScore : 55 0000000 0000 0 00000 0000 00 55 888888 3 5 0 8 22222222 7 7 7 7 0 000000 7 4444444444444 7 4 6666666 11 7 7 33333 7 9 333 4 4 2 555555555 8 4 0 99 6 7 666 7 7 6666666666666666666666666666666 99 44 0 4 222 0 0 00 0 0 0 0 0 777 0 77 00000000000000000000 7777 6 111 4 5 9 0 7777 2222 66 3 0 1 2 888 3 8888 5 0 7
consensus : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGAT-GTGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATT-TA-TTA---TTTTGC-ATTGTTGACTTTCTTTCTCCATTTC-AGTGACG--------TTTTTTGTCG-A--TNGTTTGTG--GTCTGATC-CC-C----------T---------T----------G--TANATAT-TTCGT-C-TAAATTGCGT-CATTTN-AATA-AAT-GA-C-A-TTT-T-C-AT-ACTCA---------ACCTGC---CTCA----TG-T---TTNATGTGTA-TGATNC----AGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
Reference ( family-106 ) : AGGAAGCATTTCAGGAAAAAAAGAATTTTTGAAACATTTGTAGTTTGTGGAAACTGATGGCATATCAAAAACTTGGCCTACCATTTTTGAT-GTGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTNTGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------ACAT-ATT-TA-TTA---TTTTGC-ATTGTTGACTTTCTTTCTCCATTTC-AGTGACG--------TTTTTTGTCG-A--TNGTTTGTG--CTCTGATC-CC-C----------T---------T----------G--TANATAT-TTCGT-C-TAAATTGCGT-CATTTN-AATA-AAT-GA-C-A-TTT-T-C-AT-ACTCA---------ACCTGC---CTCA----TG-T---TTNATGTGTA-TGATNC----AGC----C--AAAAAC-TAGCTGCGGTGANCTTG-CTCAG---C-ATNTNGAGACA-TAAA-CAATA
gi|1 : AGGAA--ATTTCAGGAAAAAAAGAATTTTTAAAACATTTGTA-TTTGTGGAAACTGATGGCATATCAAAAACTTGACC-ACCA-----GATGGTG-CATTTT-TTTTTT---TTTCAGCA-TCTTTGCTACGTTGTTT-TTATGGTT----G-TT-GAT--GTC--------GACTTTTGGGGATCAG------ACAT-ATTGGA-TTAT--TTTTTC-ATTGTTGACTTTCCATCTCCATTTC-AAAGACA--------TTTTAAGTGG-A--TTGTTTGTGA-GTCTGATC-CC-C----------T---------T----------G--TTAGTAG-TTTGT-TATAAATTTCGT-TATTTG-AATA-AAT-GA-C-A--TT-T-C-AT-ACTCA---------ATCTGC---CTTA----TG-T---TT-ATATATA-TGATAC----AG-----C--AAAAAC-TAGTTGCGGTGACCTTG-TTCAG---C-ATTT
gi|10 : aT-T-TAAATTTTGT-CATTTG-AATA-AAT-GA-T-A-TTT-A-C-AT-TCTCATGGTTACATATTTACATTCTTA----TGGT---TTTAGGTATA-TGATAC----AGC----C--AAAACC-TAGCAACCGTGACCATG-CTCAT---C-ATTTAAAGACA-TAAA-CAc
gi|12 : tTTTCGT-CGTTTTCAATA-AAT-GG-C-ATTTT-T-C-AT--CT-A---------GACTACA--CTGA----TG-T---T-----CGTC-TGATTG----ACC----C--CCCAAC-T-CCTGCAGTGAGAATG-CGCAG---C-ACAAGGAAACA-gaattatctaaacggcgt
gi|13 : gtTCA----TG-T---TTTATTTGTA-TGGTGC----AGC----C--TAAAAG-TAGCTGCGGTGAACTTG-CTTAGTGAC-ATCTT--TTCATTAAA-CAATaa
gi|14 : taTGTTGTA----C-TT-GAT---CT--------GA-TCTTGTGGATCAG------ATAT-ATT-TAATTA---TTCCAC-ATTGTTGACTTTCTTTCTCCATTTC-AGcatt
gi|15 : ttaa--AAAAAC-TAACTGCGGTGACCTTG-CTTAG---C-AATTTAAGACA-TAAAGCAATA
gi|16 : AGCTGCGGTGACC-TG-ATTAG---CAATGTTAAGAAA-TAAA-TAA
gi|2 : cAGGAAGCATTTTAAAAAAAAAA-------TGAAA----TGTAGTTT-----AATTGAT----TAT--AAAAC--GGCCTAT--TTTTTGAT-GTGCCATCTT-TTTTGC---T----GCA-TCTTTGTAAGGTTGTTT-TTATGGTA----G-TT-GAT--GTT--------AA-TCTGGGGGATCAG------GCAT-ATT-TA-TTA---TTTTGC-ATTGTTGACTTTCTTTCTCCATTTC-AGTGACT--------TTTTTCATTGCA--TTGTTTGTGA-GTCTGATC-CC-C----------T---------T----------G--TAAATAG-TTCGT-T-TAAATTGCGT-CATTTG-AATA-AAT-GA-C-A-TTT-A-C-AT-ACTCA---------ACCTGT---CTCA----TG-T---TTTA-GTGTA-TGATGC----AGC----C--AAAAAC-TAGCTGCGGTGACCTTG-CTTAG---C-ATTTTAAGACA-TAAA-TAATAagtgtt
gi|3 : ----------T---------T----------A--TAGATTT-TTCAT-C--ATATT-CGT-CGTTTTCAATA-AAT-GA-C-A-TTT-TTC-AT-CATCA---------ACAT------TAG----TG-T---TTCATTTG-A-TTATCCTCTCAGC----A--AAAAACAGAGCTGCGGTGAGCTTG-TGTGG---C-ATGATAAAACA-TAAt
gi|4 : ttaattttggtgtgtcatcgtcttggttcatgtatacacttgatgtagtgtgtattatttgtacacatatagtgtatgtgtaattttaggggatcagtatattgaaataccaattagctgatagtataagcttctatcagggtATTTTTGAT-GTGCCATCTT-TTTTGC---T----G------TCG--AGCTTATCAATTTTGGCA----C-TT-ATT--GTTCGTAAGTAAA-TTTGGGG-ATCAG-------C----TT-TA-TT-----------------GAT-----------ATGTC-A-TGATG--------TAGTTTGTCA-A--TAGTTTTTG--CTCTGATC-CC-T----------TATTACACTTT----------G--TATATAT-TTTTC-C-TAATTTGCGT-CATTTT-AATA-AAT-GA-C-A-ATT-T----T-ACT-------------CT-C---TTCA----TG-TGTGTTGATGT-TATTGATCT----AGCTAAGC--AAAAACAGAGCTGCGCTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAA-
gi|5 : CCATCTT-TT-TGC---T----GCA-TCTT--TAAGGTTG-TT-TTATGGTA----GTTT-GATACGTT--------AA-TCTGGGGGATCAG-------CATGATT-TA-TTA----TTTGC-ATTG-TGACTTTCTTTC-CCA-TTC-AGTGAC---------TTTTTTATTG-A--TTG-TTGTGGAGTCTGATC-CCAC----------T---------T----------GGATAAATAT-GTCGT-T-T-AATTGCGTCCATTTG--ATACAATGGA-C-A-TTTAC-C-ATAACTCA---------ACCTGT---CTCA----TG-T---TT--TGTGTA-T-ATGC----AGC----CCAAAAAAC-TAGCTGCGGTGACCTTGCCTTAG---C-ATTTt
gi|6 : TCTTATTTTGTATGT----GCAATCTTTGTAAGGTTGTTT-TACGGGTA----G-TT----------------------TGGGG-ATCAG------ACAT--TG-AA-TTA---TTTTGTTATTGTTGACTTT----CTCCATTTC-AGTGATA--------TTTTCTGTCG-A--T-GTTTGTG--GTCTGATCACC-C----------T---------C----------G--T-GATAG-TTTAT-TATAAATTTCGT-TATTTA-AATA-AAT-GA-C-A-TTT-T-CAAT-ACTTA---------AACTGC---CTCACTAGTT-T---TTAATATG-A-TG--GC----AG-----C--AAAAGC-TAGCTGTAAT-ATCTTG-TTC
gi|7 : ATGTC-A-TGATG--------TAGTTTGT-G-AAATAGTTTTTG--CTCTGATC-CC-C----------T---------TATTACACTTTG--TATATATGTTTTC-C-TAATTTGCGT-CATTTT-AATA-AAT-GA-CAA-TTT-T-C-AT--CT----------------C---TTCA----TG-TGTGTTGATGT-TATTGATCT----ATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAAtagaatt
gi|8 : aattttggcacttattgttcgtaagtaaatttaggggatcagcttattgatATGTC-A-TGATG--------TAGTTTGTCA-A--TAGTTTTTG--CTCTGATC-CC-CTTATTACACTT---------T----------G--TATATAT-TTTTTCC-TAATTTGCGT-CATTTT-AATA-AAT-GACC-A-TTT-T-C-AT--CT----------------C---TTCA----TG-TGTGTTGATGT-TATTGATCT----ATCTAAGC--AAAAACAGAGCTGCGGTGAGATTG-TGCAG---C-ATGAGGAAACA-TAA
gi|9 : ttttgtgacttattgttcgtaagtaaatttaggggatcagcttattgat----GCA-TCATTGTAAGGTTGTTT-TTTTGGTGTTATG-TTTGAT--GTT--------AA-TCTGGGG-ATCAGCTTATTAGAT-ATA-TA-TTGAAGTTTTGC-ATTGGTGACTTTCTTTCTCCATTTCTATTGGCGAAGCATTTTTTTTTGTTG-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAAGGGGATCAGCATATTGAAATAGCATTTTACACTGTGTTCTTAGCTCTATGTTTGATCCCCTATCAAAGATTATAGATTTCATCATTTAAAACTGTGACATGTTTCATCACTACATTGGTGTTACAT