lowQualScore : 11 11 1111 1 111 111111 111111 222222222 111111 3333333 1111 666666666666666 22222222 1111 11 111111 333333333 111111 111 11111 3333333 222222 1 11 444444444444 1 1 1 22 22 2 2 2 2 1
lowQualScore : 6 99 55 55 6 99 6 4444 6 1 3 6 888 6 2 111 999999 1 666666 333333333 999999 1 2222222 6 2222 3 999999999999999 99999999 8 0 8 8 0 8 7777 8 11 666666 222222222 8 555555 111 88888 4444444 666666 3 88 777777777777 3 3 3 22 66 0 0 0 0 5
lowQualScore : . .. .. .. . .. . .... . . . . ... . . ... ...... . ...... ......... ...... . ....... . .... . ............... ........ . . . . . . .... . .. ...... ......... . ...... ... ..... ....... ...... . .. ............ . . . .. .. . . . . .
lowQualScore : 7 22 88 88 7 22 7 2222 7 7 3 7 777 7 5 777 222222 0 777777 333333333 222222 7 3333333 7 7777 0 333333333333333 00000000 0 8 0 0 8 0 0000 0 88 000000 000000000 0 888888 000 55555 2222222 888888 3 33 777777777777 3 3 3 55 00 0 0 0 0 0
consensus : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----A-AA-AAA-C--ANCGCTTAC-GTAT-------AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--T---TGGTC---------C-CGTTAC-A-T--ATTT-A-CACC---T-CTT---AT--AACGTGG--T--NTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTCGNGAGATCGGAGTATTAGTCAACGGTTTGGTGAACTTCAATCGGCTGATCCGTAA
Reference ( gi|3 ) : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----G-AA-AAA-C--AACGCTTACGGTAT-------AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--T---TGGTC---------C-CGTTAC-A-T--ATTT-A-CACC---T-CTT---AC--AACGTAG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-AAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
gi|4 : CAGTAAA-CTT--CTTTTATAA--CGTT--GTC-GG--TTA-TAAA----G-TATTAC-CGGA-T-G-TAACAT-AGCCATTCCGT---GGT------CCTGAC-AA---TGTTCT------T--ATATA------TTTCATTAT-----A-AA-AAA-C--ACCGCTTA-----T-------AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--T---TGGTC---------C-CGTTAC-A-T--ATTT-A-CACC---T-CTT---AT--AGCGTAG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-ACTAATCC-TAA
gi|10 : CAGTAAA-CTT--CTTTTATAA--CGTA--GTT-GG--TTA-TAAA----G-TATCAC-CGGA-T-A-TAACGT-AGCCATTCCGT---GGT------CCCAAC-AA---TGTTCCTACATGT--ATATA------TTTCATTATTTAAAA-AA-AAA-C--ACCGCT-----TAT-------AACGTATC--------TGTAa
gi|13 : taCAGTAAA-CTT--CTTTTATAA--CGTA--
gi|2 : ttttcgtttataacgtacaccagttataacgtagaatttatcacagtccattgagaCAGTAAA-CTT--CTTTTATAA--CGTA--t
gi|11 : gaaatacaccaattcgaaatcggtagaccgcgacgacactcacgatagcaacctgtgcccgacgcttgtgtaccatcaactcagacgatcaaaggacatttgtctgacatccaatggcatgtgtacgtaaattccgtggaaggtgtgaatgacagtattttttctgctttgggaactattaaaacttttgtcaataaatgtgatcaaaccaaacagaaaaccataacggacattttaaaatgatcatcatacaatgtacaatgtagtcttgttgaaataattgctctgtgaaactaaaatgtttactgaaagtgaatttatttatttcttagtaaagataataacaccaaacatacctgcaaatcatttatcaatatactattacgattatagtttgaaatatctataatgcactagcggtttgaaatatattggcggtacgggtattgattacttcggttttcgtttataacgtacaccggttataacgtagaattcatccacagtcccttgagaAGTAAAGCTT--CTTTTATAAA-CGTAAGGTC-GGGGTTA-TAAA----G-TATTCCACGGA-TTG-TAACGT-AGCCATTCCGT---TGT------CCCGAC--A---TGTTCT------T--ATATA------TTTC-TTAT-----A-AA-GAATC--AACta
gi|1 : GTAAA-CTTGACTTTTATAAAACGTAT-GTCAGG--TTAGTAGACATCGCTATCACGCGTAGT-GATAACGTCAGC-ATGTCGTCTGGGTACTTACCCCGACCAACTGTGTTTC------G--ATATAATAATTTTTAATTAT-----GTAACAAA-TTGAACACT--CCGCATCCTTATCAACGTATCCTAAAAATTGTATATTATTGT-TT-AT-CGCTTAATAACTCTAGTAAGTG-AGAATAAT---TGGTCATTCCGATAC-TGTTAC-AAT--ATTTTA-CACC---TTCTTCTAATGAAACGTGG--TAGTTCTCT-TCTGTCGTCTAGTCAGAGTTGCCA-CCTTTTCCCT-CGAGCGAGCTc
gi|2 : acTC-GT--TTA-TAAC----G-TA-CAC-CGGT-T-A-TAACGT-AG-AATTC-------AT------CC--AC-A-----GTCCC------TTGAGATA---------CGTTAT--------A-AAA-G--AA-GTTTACTGTAaacggaaggtgatgacattattttagtccacatgtgttccttagtgttgtctatctcatcagctacctattcctgtaattgcggtaatttttgagttgtgcttttccatttgaattatgatatttacgaaatctgcgtgtaagacgcgacgatacactcacgatagctaatgccggatcagagaaacgctgagtggaccgcgacggcttaatttgtgtgtttgttatcccttattctaaattgtagcgaatcaagggacatttgtttcgcttgatatggtactcatctcccatgtcgtacgtaaatttctcgtgtatataagtgtgactacaccgtaatttctttcttgctttggcaacccataattcagaactatttgtcaatgaataatagatcaaaccaaacaagaaaatatctgcgtaacgagacgttatgtgaaataatctatcatacaatgtactatagaagtgtagatcttgttggaaataattgcttttatgaataaatatcttattctgttgttgtatttttattcttttacgtagcagggaatagtaagcgctcaaaggatgctgcgaaatgttatatctttataaataccttaagtaatatagtattgaaataatctatagagatgcactagcgaagttatgaa
gi|7 : gaaatacaccaattcgaaatcggtagaccgcgacgacactcacgatagcaacctgtgcccgacgcttgtgtaccatcaactcagacgatcaaaggacatttgtctgacatccaatggcatgtgtacgtaaattccgtggaaggtgtgaatgacagtattttttctgctttgggaactattaaaacttttgtcaataaatgtgatcaaaccaaacagaaaaccataacggacattttaaaatgatcatcatacaatgtacaatgtagtcttgttgaaataattgctctgtgaaactaaaatgtttactgaaagtgaatttatttatttcttagtaaagataataacaccaaacatacctgcaaatcatttatcaatatactattacgattatagtttgaaatatctataatgcactagcggtttgaaatatattggcggtacgggtattgattacttcggttt-GG--TTA-TAAA----G-TACCAC-CGGA-T-G-TAACG--AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T---TATA------TTTCATTAA-----A-AA-AAA-C--ACCGCT------AT-------AACGTATC--------TGTATATAAC-ACATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--T---TGGTC---------C-CGTTAC-A-T--TTTA-A-CCCCTCTT-CTT---ACT-AATGTAG--
gi|10 : taattggactgcaatttgttttaTAT-------AACGTAGT--------TGGTTATAAA-GTATC-AC-CGGATA-TAA----CGTA-GC----CAT--TCCGTGGTC---------C-C
gi|8 : tacagtaaacttctttATATAGC-GTATTGATGCGCC-A-TAA----AGTA-GTAAGAAAT--T---TGGTC---------CACGTTACCA-TTAATTT-AACACC---T-CTT---AT--AACGTGGGGT--ATCTCAACCTG--GTTT---CA-------CACCCTTTTCCCTGCGATC-AGCTTGGGAGATCGGAGTATTAGTCAACAGTTTGGTGAACTTCAATCGGCTGATCCGTAAaacaatgttcctacatgtatatatttcattatttaaaaaaaaacaccgcttataacgtatctgta
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): AAAATACACCAATTCGAAATCGGTAAACCGCGACGACAATCACAATAGCAATGACGACGAACCTGTGCCCGACGCGTATGTACATGTACCATCAACTCAGACGATCAAAGCACATTGTCTCGACATACCATGTACATAAAATTCCGTGAAGGTGTAAAATGACAGTATTTTTTTCTCTTTGCAAACTATTCAAACTTATTGTCAATAAATGTGATCAAACCAACAGACAAACCATAACGGACTTTTTTAAATTGATTCATCATTACAATG
Unaligned ( gi|6 ): TGAATTTATTTATTTCTTAGTACCAAGAAATCAACCCAAACATTACTGCAGAATCATTTATCAATATACATATATATAATAGTTTGATAATATCTATAAGCCACTAGTGGTTTGAAAAATTAATGTTGGCGGTACGGTATTGATTACTTCCGGTTTTCGTTTTAACGCTACACCGGTTAAAACGAGAAATTTATTCACCAAG
Unaligned ( gi|9 ): AATATTGATAACACGTACATGTACACCATTGGTTTAAGAAATAAATTGATACTGGCACCGAGTATTTCCGGTCTATGTTTATAATATACACTGGTTATAGCGTAGGATCTATCACAGAGATACATTACAAAATGAGTTCACTGTA
Unaligned ( gi|12 ): AAGTACTTCCGGTCTCTTGTTACAACGTAAACCGGTTAAAACGTAAACTTTATTACAGCCCCACGAGATGCATTATAACAGAAGTTTACTGTA
Unaligned ( gi|14 ): TTATAATGTGCATGGCTTATAACATAGAATTGTAAACCATTCCTTCAGGTACATCATAAATGAGATTTACTGTA
Unaligned ( gi|15 ): GGTATTTGAGTTGTTGTTCCAGGAAATGTATTTGAATAAAAT
Unaligned ( gi|16 ): TAGTTTAAAATATCTATAATGCACTAGCGGTTTGAAA
Alignments
lowQualScore : 11 11 1111 1 111 111111 111111 111111111 111111 2222222222 111 111 444444 22222222 1111 11 333333333 11 111 11 111111 1 11 111 3333333 1 1 1 22222 2 2 2 2 2
lowQualScore : 5 77 33 33 5 77 5 2222 5 0 1 5 666 5 0 000 666666 111111 888888888 666666 0 1111111111 000 5 000 444444 8 99999999 8 0 8 8 0 8 7777 8 8 11 222222222 8 8 8 11 8 8 8 444 33 999999 0 33 777 2222222 0 0 0 33333 3 3 3 3 3 0 6
lowQualScore : . .. .. .. . .. . .... . . . . ... . . ... ...... ...... ......... ...... . .......... ... . ... ...... . ........ . . . . . . .... . . .. ......... . . . .. . . . ... .. ...... . .. ... ....... . . . ..... . . . . . . .
lowQualScore : 7 99 66 66 7 99 7 1111 7 1 4 7 000 7 7 000 444444 777777 777777777 444444 1 7777777777 000 7 222 666666 0 00000000 0 8 0 0 8 0 0000 0 0 00 000000000 0 0 0 00 0 0 0 000 88 555555 0 88 555 5555555 0 0 0 88888 3 7 7 7 3 7 7
consensus : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----A----AAA---AA-CAC--CGCTTAC--TAT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACC-TCTT---AT--AACGTGG--T--CTCTCA-CCTG--GTT---TCA-------CACC-TTTTCCCT-CGATC-AGCT--CGCGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
Reference ( family-1051 ) : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----A----AAA---AA-CAN--CGCTTACG-TAT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACC-TCTT---AT--AACGTGG--T--NTCTCA-CCTG--GTT---TCA-------CACC-TTTTCCCT-CGATC-AGCT--CGNGAGATCGGAGTATTAGTCAACGGTTTGGTGAACTTCAATCGGCTGATCCGTAA
gi|1 : GTAAA-CTTGACTTTTATAAAACGTAT-GTCAGG--TTAGTAGACATCGCTATCACGCGTAGT-GATAACGTCAGC-ATGTCGTCTGGGTACTTACCCCGACCAACTGTGTTTC------G--ATATAATAATTTTTAATTAT-----GTAACAAATTGAA-CACTCCGCATCCT-TATCAACGTATCCTAAAAATTGTATATTATTGT-TT-AT-CGCTTAATAACTCTAGTAAGTG-AGAATAATTGGTCATTCCGATAC-TGTTAC-AAT--ATTTTA-CACCTTCTTCTAATGAAACGTGG--TAGTTCTCT-TCTGTCGTCTAGTCAGAGTTGCCACC-TTTTCCCT-CGAGCGAGCTAACGGAAGGT
gi|10 : acCAGTAAA-CTT--CTTTTATAA--CGTA--GTT-GG--TTA-TAAA----G-TATCAC-CGGA-T-A-TAACGT-AGCCATTCCGT---GGT------CCCAAC-AA---TGTTCCTACATGT--ATATA------TTTCATTATTTAAAA----AAA---AA-CAC--CGCT-----TAT-AACGTATC--------TGTAgatgacattattttagtccacatgtgttccttagtgttgtctatctcatcagctacctattcctgtaattgcggtaatttttgagttgtgcttttccatttgaattatgatatttacgaaatctgcgtgtaagacgcgacgatacactcacgatagctaatgccggatcagagaaacgctgagtggaccgcgacggcttaatttgtgtgtttgttatcccttattctaaattgtagcgaatcaagggacatttgtttcgcttgatatggtactcatctcccatgtcgtacgtaaatttctcgtgtatataagtgtgactacaccgtaatttctttcttgctttggcaacccataattcagaactatttgtcaatgaataatagatcaaaccaaacaagaaaatatctgcgtaacgagacgttatgtgaaataatctatcatacaatgtactatagaagtgtagatcttgttggaaataattgcttttatgaataaatatcttattctgttgttgtatttttattcttttacgtagcagggaatagtaagcgctcaaaggatgctgcgaaatgttatatctttataaataccttaagtaatatagtattgaaataatctatagagatgcactagcgaagttatgaa
gi|11 : taAGTAAAGCTT--CTTTTATAAA-CGTAAGGTC-GGGGTTA-TAAA----G-TATTCCACGGA-TTG-TAACGT-AGCCATTCCGT---TGT------CCCGAC--A---TGTTCT------T--ATATA------TTTC-TTAT-----A----AAG---AATCAA--C
gi|13 : CAGTAAA-CTT--CTTTTATAA--CGTA--c
gi|2 : ttttcgtttataacgtacaccagttataacgtagaatttatcacagtccattgagaTC-GT--TTA-TAAC----G-TA-CAC-CGGT-T-A-TAACGT-AG-AATTC-------AT------CC--AC-A-----GTCCC------TTGAGATA---------CGTTAT-----A----AAA---GA-t
gi|2 : gaaatacaccaattcgaaatcggtagaccgcgacgacactcacgatagcaacctgtgcccgacgcttgtgtaccatcaactcagacgatcaaaggacatttgtctgacatccaatggcatgtgtacgtaaattccgtggaaggtgtgaatgacagtattttttctgctttgggaactattaaaacttttgtcaataaatgtgatcaaaccaaacagaaaaccataacggacattttaaaatgatcatcatacaatgtacaatgtagtcttgttgaaataattgctctgtgaaactaaaatgtttactgaaagtgaatttatttatttcttagtaaagataataacaccaaacatacctgcaaatcatttatcaatatactattacgattatagtttgaaatatctataatgcactagcggtttgaaatatattggcggtacgggtattgattacttcggtttCAGTAAA-CTT--CTTTTATAA--CGTA--agtttactgta
gi|3 : gaaatacaccaattcgaaatcggtagaccgcgacgacactcacgatagcaacctgtgcccgacgcttgtgtaccatcaactcagacgatcaaaggacatttgtctgacatccaatggcatgtgtacgtaaattccgtggaaggtgtgaatgacagtattttttctgctttgggaactattaaaacttttgtcaataaatgtgatcaaaccaaacagaaaaccataacggacattttaaaatgatcatcatacaatgtacaatgtagtcttgttgaaataattgctctgtgaaactaaaatgtttactgaaagtgaatttatttatttcttagtaaagataataacaccaaacatacctgcaaatcatttatcaatatactattacgattatagtttgaaatatctataatgcactagcggtttgaaatatattggcggtacgggtattgattacttcggttttcgtttataacgtacaccggttataacgtagaattcatccacagtcccttgagaCAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----G----AAA---AA-CAA--CGCTTACGGTAT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACC-TCTT---AC--AACGTAG--T--CTCTCA-CCTG--GTT---TCA-------CACC-TTTTCCCT-CGATC-AGCT--C-CGAGATC-AAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAAta
gi|4 : CAGTAAA-CTT--CTTTTATAA--CGTT--GTC-GG--TTA-TAAA----G-TATTAC-CGGA-T-G-TAACAT-AGCCATTCCGT---GGT------CCTGAC-AA---TGTTCT------T--ATATA------TTTCATTAT-----A----AAA---AA-CAC--CGCTTA-----T-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACC-TCTT---AT--AGCGTAG--T--CTCTCA-CCTG--GTT---TCA-------CACC-TTTTCCCT-CGATC-AGCT--C-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-ACTAATCC-TAA
gi|7 : -GG--TTA-TAAA----G-TACCAC-CGGA-T-G-TAACG--AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T---TATA------TTTCATTAA-----A----AAA---AA-CAC--CGCT------AT-AACGTATC--------TGTATATAAC-ACATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--TTTA-A-CCCC-TCTT---a
gi|8 : taattggactgcaatttgttttaATATAGC-GTATTGATGCGCC-A-TAA----AGTA-GTAAGAAAT--TTGGTC---------CACGTTACCA-TTAATTT-AACACC-TCTT---AT--AACGTGGGGT--ATCTCAACCTG--GTT---TCA-------CACCCTTTTCCCTGCGATC-AGCT--TGGGAGATCGGAGTATTAGTCAACAGTTTGGTGAACTTCAATCGGCTGATCCGTAActtactaatgtag
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AAAATACACCAATTCGAAATCGGTAAACCGCGACGACAATCACAATAGCAATGACGACGAACCTGTGCCCGACGCGTATGTACATGTACCATCAACTCAGACGATCAAAGCACATTGTCTCGACATACCATGTACATAAAATTCCGTGAAGGTGTAAAATGACAGTATTTTTTTCTCTTTGCAAACTATTCAAACTTATTGTCAATAAATGTGATCAAACCAACAGACAAACCATAACGGACTTTTTTAAATTGATTCATCATTACAATG
Unaligned ( gi|6 ): TGAATTTATTTATTTCTTAGTACCAAGAAATCAACCCAAACATTACTGCAGAATCATTTATCAATATACATATATATAATAGTTTGATAATATCTATAAGCCACTAGTGGTTTGAAAAATTAATGTTGGCGGTACGGTATTGATTACTTCCGGTTTTCGTTTTAACGCTACACCGGTTAAAACGAGAAATTTATTCACCAAG
Unaligned ( gi|9 ): AATATTGATAACACGTACATGTACACCATTGGTTTAAGAAATAAATTGATACTGGCACCGAGTATTTCCGGTCTATGTTTATAATATACACTGGTTATAGCGTAGGATCTATCACAGAGATACATTACAAAATGAGTTCACTGTA
Unaligned ( gi|12 ): AAGTACTTCCGGTCTCTTGTTACAACGTAAACCGGTTAAAACGTAAACTTTATTACAGCCCCACGAGATGCATTATAACAGAAGTTTACTGTA
Unaligned ( gi|14 ): TTATAATGTGCATGGCTTATAACATAGAATTGTAAACCATTCCTTCAGGTACATCATAAATGAGATTTACTGTA
Unaligned ( gi|15 ): GGTATTTGAGTTGTTGTTCCAGGAAATGTATTTGAATAAAAT
Unaligned ( gi|16 ): TAGTTTAAAATATCTATAATGCACTAGCGGTTTGAAA
Alignments
lowQualScore : 11 11 1111 1 111 111111 111111 111111111 111111 2222222222 111 111 3333333 22222222 1111 11 333333333 11 111 11 111111 1 11 111 3333333 1 1 1 2 1 1 1 1 1
lowQualScore : 6 99 55 55 5 77 5 2222 5 0 1 5 666 5 0 000 666666 111111 888888888 666666 0 1111111111 000 111 1111111 6 99999999 8 0 8 8 0 8 7777 8 8 11 222222222 8 8 8 11 8 8 8 444 33 888888 0 33 777 2222222 0 0 0 3 3 3 3 3 3 6
lowQualScore : . .. .. .. . .. . .... . . . . ... . . ... ...... ...... ......... ...... . .......... ... ... ....... . ........ . . . . . . .... . . .. ......... . . . .. . . . ... .. ...... . .. ... ....... . . . . . . . . . .
lowQualScore : 7 22 88 88 7 99 7 1111 7 1 4 7 000 7 7 000 444444 777777 777777777 444444 1 7777777777 000 777 8888888 7 00000000 0 8 0 0 8 0 0000 0 0 00 000000000 0 0 0 00 0 0 0 000 88 888888 0 88 555 5555555 0 0 0 3 3 3 3 3 3 7
consensus : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGCTTAC--T-AT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AACGTGG--T--CTCTCA-CCTG--GTTT---CA-------CACC-TTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
Reference ( family-1051 ) : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGCTTAC--T-AT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AACGTGG--T--CTCTCA-CCTG--GTTT---CA-------CACC-TTTTCCCT-CGATC-AGCTCGCGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
gi|1 : GTAAA-CTTGACTTTTATAAAACGTAT-GTCAGG--TTAGTAGACATCGCTATCACGCGTAGT-GATAACGTCAGC-ATGTCGTCTGGGTACTTACCCCGACCAACTGTGTTTC------G--ATATAATAATTTTTAATTAT-----GTAACAAATTGAACACTCCGCATCC--TTATCAACGTATCCTAAAAATTGTATATTATTGT-TT-AT-CGCTTAATAACTCTAGTAAGTG-AGAATAATTGGTCATTCCGATAC-TGTTAC-AAT--ATTTTA-CACCTTCTTCTAATGAAACGTGG--TAGTTCTCT-TCTGTCGTCTAGTCAGAGTTGCCACC-TTTTCCCT-CGAGCGAGCT
gi|10 : acCAGTAAA-CTT--CTTTTATAA--CGTA--GTT-GG--TTA-TAAA----G-TATCAC-CGGA-T-A-TAACGT-AGCCATTCCGT---GGT------CCCAAC-AA---TGTTCCTACATGT--ATATA------TTTCATTATTTAAAA----AAA---AACAC--CGCT-----T-AT-AACGTATC--------TGTAaacggaaggtgatgacattattttagtccacatgtgttccttagtgttgtctatctcatcagctacctattcctgtaattgcggtaatttttgagttgtgcttttccatttgaattatgatatttacgaaatctgcgtgtaagacgcgacgatacactcacgatagctaatgccggatcagagaaacgctgagtggaccgcgacggcttaatttgtgtgtttgttatcccttattctaaattgtagcgaatcaagggacatttgtttcgcttgatatggtactcatctcccatgtcgtacgtaaatttctcgtgtatataagtgtgactacaccgtaatttctttcttgctttggcaacccataattcagaactatttgtcaatgaataatagatcaaaccaaacaagaaaatatctgcgtaacgagacgttatgtgaaataatctatcatacaatgtactatagaagtgtagatcttgttggaaataattgcttttatgaataaatatcttattctgttgttgtatttttattcttttacgtagcagggaatagtaagcgctcaaaggatgctgcgaaatgttatatctttataaataccttaagtaatatagtattgaaataatctatagagatgcactagcgaagttatgaa
gi|11 : taAGTAAAGCTT--CTTTTATAAA-CGTAAGGTC-GGGGTTA-TAAA----G-TATTCCACGGA-TTG-TAACGT-AGCCATTCCGT---TGT------CCCGAC--A---TGTTCT------T--ATATA------TTTC-TTAT-----A----AAG---AA
gi|13 : CAGTAAA-CTT--CTTTTATAA--CGTA--tcaacc
gi|2 : ttttcgtttataacgtacaccagttataacgtagaatttatcacagtccattgagaTC-GT--TTA-TAAC----G-TA-CAC-CGGT-T-A-TAACGT-AG-AATTC-------AT------CC--AC-A-----GTCCC------TTGAGATA---------CGTTAT-----A----AAA---GA-A----GTTTAC--T-GT-At
gi|3 : gaaatacaccaattcgaaatcggtagaccgcgacgacactcacgatagcaacctgtgcccgacgcttgtgtaccatcaactcagacgatcaaaggacatttgtctgacatccaatggcatgtgtacgtaaattccgtggaaggtgtgaatgacagtattttttctgctttgggaactattaaaacttttgtcaataaatgtgatcaaaccaaacagaaaaccataacggacattttaaaatgatcatcatacaatgtacaatgtagtcttgttgaaataattgctctgtgaaactaaaatgtttactgaaagtgaatttatttatttcttagtaaagataataacaccaaacatacctgcaaatcatttatcaatatactattacgattatagtttgaaatatctataatgcactagcggtttgaaatatattggcggtacgggtattgattacttcggtttCAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----G----AAA---AACAA--CGCTTACGGT-AT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AC--AACGTAG--T--CTCTCA-CCTG--GTTT---CA-------CACC-TTTTCCCT-CGATC-AGCTC-CGAGATC-AAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
gi|4 : CAGTAAA-CTT--CTTTTATAA--CGTT--GTC-GG--TTA-TAAA----G-TATTAC-CGGA-T-G-TAACAT-AGCCATTCCGT---GGT------CCTGAC-AA---TGTTCT------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGCTTA------T-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AGCGTAG--T--CTCTCA-CCTG--GTTT---CA-------CACC-TTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-ACTAATCC-TAA
gi|7 : -GG--TTA-TAAA----G-TACCAC-CGGA-T-G-TAACG--AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T---TATA------TTTCATTAA-----A----AAA---AACAC--CGCT-------AT-AACGTATC--------TGTATATAAC-ACATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--TTTA-A-CCCCT-CTT---a
gi|8 : taattggactgcaatttgttttaATATAGC-GTATTGATGCGCC-A-TAA----AGTA-GTAAGAAAT--TTGGTC---------CACGTTACCA-TTAATTT-AACACCT-CTT---AT--AACGTGGGGT--ATCTCAACCTG--GTTT---CA-------CACCCTTTTCCCTGCGATC-AGCTTGGGAGATCGGAGTATTAGTCAACAGTTTGGTGAACTTCAATCGGCTGATCCGTAActtactaatgtag
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AAAATACACCAATTCGAAATCGGTAAACCGCGACGACAATCACAATAGCAATGACGACGAACCTGTGCCCGACGCGTATGTACATGTACCATCAACTCAGACGATCAAAGCACATTGTCTCGACATACCATGTACATAAAATTCCGTGAAGGTGTAAAATGACAGTATTTTTTTCTCTTTGCAAACTATTCAAACTTATTGTCAATAAATGTGATCAAACCAACAGACAAACCATAACGGACTTTTTTAAATTGATTCATCATTACAATG
Unaligned ( gi|6 ): TGAATTTATTTATTTCTTAGTACCAAGAAATCAACCCAAACATTACTGCAGAATCATTTATCAATATACATATATATAATAGTTTGATAATATCTATAAGCCACTAGTGGTTTGAAAAATTAATGTTGGCGGTACGGTATTGATTACTTCCGGTTTTCGTTTTAACGCTACACCGGTTAAAACGAGAAATTTATTCACCAAG
Unaligned ( gi|9 ): AATATTGATAACACGTACATGTACACCATTGGTTTAAGAAATAAATTGATACTGGCACCGAGTATTTCCGGTCTATGTTTATAATATACACTGGTTATAGCGTAGGATCTATCACAGAGATACATTACAAAATGAGTTCACTGTA
Unaligned ( gi|12 ): AAGTACTTCCGGTCTCTTGTTACAACGTAAACCGGTTAAAACGTAAACTTTATTACAGCCCCACGAGATGCATTATAACAGAAGTTTACTGTA
Unaligned ( gi|14 ): TTATAATGTGCATGGCTTATAACATAGAATTGTAAACCATTCCTTCAGGTACATCATAAATGAGATTTACTGTA
Unaligned ( gi|15 ): GGTATTTGAGTTGTTGTTCCAGGAAATGTATTTGAATAAAAT
Unaligned ( gi|16 ): TAGTTTAAAATATCTATAATGCACTAGCGGTTTGAAA
Alignments
lowQualScore : 11 11 1111 1 111 111111 111111 111111111 111111 2222222222 111 111 3333333 22222222 1111 11 333333333 11 111 11 111111 1 11 111 3333333 1 1 1 1 1 1 1 1 1
lowQualScore : 6 99 55 55 5 77 5 2222 5 0 1 5 666 5 0 000 666666 111111 888888888 666666 0 1111111111 000 111 1111111 6 99999999 8 0 8 8 0 8 7777 8 8 11 222222222 8 8 8 11 8 8 8 444 33 888888 0 33 777 2222222 0 0 0 3 3 3 3 3 3 6
lowQualScore : . .. .. .. . .. . .... . . . . ... . . ... ...... ...... ......... ...... . .......... ... ... ....... . ........ . . . . . . .... . . .. ......... . . . .. . . . ... .. ...... . .. ... ....... . . . . . . . . . .
lowQualScore : 7 22 88 88 7 99 7 1111 7 1 4 7 000 7 7 000 444444 777777 777777777 444444 1 7777777777 000 777 8888888 7 00000000 0 8 0 0 8 0 0000 0 0 00 000000000 0 0 0 00 0 0 0 000 88 888888 0 88 555 5555555 0 0 0 3 3 3 3 3 3 7
consensus : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGCTTAC--T-AT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AACGTGG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
Reference ( family-1051 ) : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGCTTAC--T-AT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AACGTGG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
gi|1 : GTAAA-CTTGACTTTTATAAAACGTAT-GTCAGG--TTAGTAGACATCGCTATCACGCGTAGT-GATAACGTCAGC-ATGTCGTCTGGGTACTTACCCCGACCAACTGTGTTTC------G--ATATAATAATTTTTAATTAT-----GTAACAAATTGAACACTCCGCATCC--TTATCAACGTATCCTAAAAATTGTATATTATTGT-TT-AT-CGCTTAATAACTCTAGTAAGTG-AGAATAATTGGTCATTCCGATAC-TGTTAC-AAT--ATTTTA-CACCTTCTTCTAATGAAACGTGG--TAGTTCTCT-TCTGTCGTCTAGTCAGAGTTGCCA-CCTTTTCCCT-CGAGCGAGCT
gi|10 : acCAGTAAA-CTT--CTTTTATAA--CGTA--GTT-GG--TTA-TAAA----G-TATCAC-CGGA-T-A-TAACGT-AGCCATTCCGT---GGT------CCCAAC-AA---TGTTCCTACATGT--ATATA------TTTCATTATTTAAAA----AAA---AACAC--CGCT-----T-AT-AACGTATC--------TGTAaacggaaggtgatgacattattttagtccacatgtgttccttagtgttgtctatctcatcagctacctattcctgtaattgcggtaatttttgagttgtgcttttccatttgaattatgatatttacgaaatctgcgtgtaagacgcgacgatacactcacgatagctaatgccggatcagagaaacgctgagtggaccgcgacggcttaatttgtgtgtttgttatcccttattctaaattgtagcgaatcaagggacatttgtttcgcttgatatggtactcatctcccatgtcgtacgtaaatttctcgtgtatataagtgtgactacaccgtaatttctttcttgctttggcaacccataattcagaactatttgtcaatgaataatagatcaaaccaaacaagaaaatatctgcgtaacgagacgttatgtgaaataatctatcatacaatgtactatagaagtgtagatcttgttggaaataattgcttttatgaataaatatcttattctgttgttgtatttttattcttttacgtagcagggaatagtaagcgctcaaaggatgctgcgaaatgttatatctttataaataccttaagtaatatagtattgaaataatctatagagatgcactagcgaagttatgaa
gi|11 : taAGTAAAGCTT--CTTTTATAAA-CGTAAGGTC-GGGGTTA-TAAA----G-TATTCCACGGA-TTG-TAACGT-AGCCATTCCGT---TGT------CCCGAC--A---TGTTCT------T--ATATA------TTTC-TTAT-----A----AAG---AA
gi|13 : CAGTAAA-CTT--CTTTTATAA--CGTA--tcaacc
gi|2 : ttttcgtttataacgtacaccagttataacgtagaatttatcacagtccattgagaTC-GT--TTA-TAAC----G-TA-CAC-CGGT-T-A-TAACGT-AG-AATTC-------AT------CC--AC-A-----GTCCC------TTGAGATA---------CGTTAT-----A----AAA---GA-A----GTTTAC--T-GT-At
gi|3 : gaaatacaccaattcgaaatcggtagaccgcgacgacactcacgatagcaacctgtgcccgacgcttgtgtaccatcaactcagacgatcaaaggacatttgtctgacatccaatggcatgtgtacgtaaattccgtggaaggtgtgaatgacagtattttttctgctttgggaactattaaaacttttgtcaataaatgtgatcaaaccaaacagaaaaccataacggacattttaaaatgatcatcatacaatgtacaatgtagtcttgttgaaataattgctctgtgaaactaaaatgtttactgaaagtgaatttatttatttcttagtaaagataataacaccaaacatacctgcaaatcatttatcaatatactattacgattatagtttgaaatatctataatgcactagcggtttgaaatatattggcggtacgggtattgattacttcggtttCAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----G----AAA---AACAA--CGCTTACGGT-AT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AC--AACGTAG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-AAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
gi|4 : CAGTAAA-CTT--CTTTTATAA--CGTT--GTC-GG--TTA-TAAA----G-TATTAC-CGGA-T-G-TAACAT-AGCCATTCCGT---GGT------CCTGAC-AA---TGTTCT------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGCTTA------T-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AGCGTAG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-ACTAATCC-TAA
gi|7 : -GG--TTA-TAAA----G-TACCAC-CGGA-T-G-TAACG--AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T---TATA------TTTCATTAA-----A----AAA---AACAC--CGCT-------AT-AACGTATC--------TGTATATAAC-ACATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--TTTA-A-CCCCT-CTT---a
gi|8 : taattggactgcaatttgttttaATATAGC-GTATTGATGCGCC-A-TAA----AGTA-GTAAGAAAT--TTGGTC---------CACGTTACCA-TTAATTT-AACACCT-CTT---AT--AACGTGGGGT--ATCTCAACCTG--GTTT---CA-------CACCCTTTTCCCTGCGATC-AGCTTGGGAGATCGGAGTATTAGTCAACAGTTTGGTGAACTTCAATCGGCTGATCCGTAActtactaatgtag
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AAAATACACCAATTCGAAATCGGTAAACCGCGACGACAATCACAATAGCAATGACGACGAACCTGTGCCCGACGCGTATGTACATGTACCATCAACTCAGACGATCAAAGCACATTGTCTCGACATACCATGTACATAAAATTCCGTGAAGGTGTAAAATGACAGTATTTTTTTCTCTTTGCAAACTATTCAAACTTATTGTCAATAAATGTGATCAAACCAACAGACAAACCATAACGGACTTTTTTAAATTGATTCATCATTACAATG
Unaligned ( gi|6 ): TGAATTTATTTATTTCTTAGTACCAAGAAATCAACCCAAACATTACTGCAGAATCATTTATCAATATACATATATATAATAGTTTGATAATATCTATAAGCCACTAGTGGTTTGAAAAATTAATGTTGGCGGTACGGTATTGATTACTTCCGGTTTTCGTTTTAACGCTACACCGGTTAAAACGAGAAATTTATTCACCAAG
Unaligned ( gi|9 ): AATATTGATAACACGTACATGTACACCATTGGTTTAAGAAATAAATTGATACTGGCACCGAGTATTTCCGGTCTATGTTTATAATATACACTGGTTATAGCGTAGGATCTATCACAGAGATACATTACAAAATGAGTTCACTGTA
Unaligned ( gi|12 ): AAGTACTTCCGGTCTCTTGTTACAACGTAAACCGGTTAAAACGTAAACTTTATTACAGCCCCACGAGATGCATTATAACAGAAGTTTACTGTA
Unaligned ( gi|14 ): TTATAATGTGCATGGCTTATAACATAGAATTGTAAACCATTCCTTCAGGTACATCATAAATGAGATTTACTGTA
Unaligned ( gi|15 ): GGTATTTGAGTTGTTGTTCCAGGAAATGTATTTGAATAAAAT
Unaligned ( gi|16 ): TAGTTTAAAATATCTATAATGCACTAGCGGTTTGAAA
Alignments
lowQualScore : 11 11 1111 1 111 111111 111111 111111111 111111 2222222222 111 111 3333333 22222222 1111 11 333333333 11 111 11 111111 1 11 111 3333333 1 1 1 1 1 1 1 1 1
lowQualScore : 6 99 55 55 5 77 5 2222 5 0 1 5 666 5 0 000 666666 111111 888888888 666666 0 1111111111 000 111 1111111 6 99999999 8 0 8 8 0 8 7777 8 8 11 222222222 8 8 8 11 8 8 8 444 33 888888 0 33 777 2222222 0 0 0 3 3 3 3 3 3 6
lowQualScore : . .. .. .. . .. . .... . . . . ... . . ... ...... ...... ......... ...... . .......... ... ... ....... . ........ . . . . . . .... . . .. ......... . . . .. . . . ... .. ...... . .. ... ....... . . . . . . . . . .
lowQualScore : 7 22 88 88 7 99 7 1111 7 1 4 7 000 7 7 000 444444 777777 777777777 444444 1 7777777777 000 777 8888888 7 00000000 0 8 0 0 8 0 0000 0 0 00 000000000 0 0 0 00 0 0 0 000 88 888888 0 88 555 5555555 0 0 0 3 3 3 3 3 3 7
consensus : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGCTTAC--T-AT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AACGTGG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
Reference ( family-1051 ) : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGCTTAC--T-AT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AACGTGG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
gi|1 : GTAAA-CTTGACTTTTATAAAACGTAT-GTCAGG--TTAGTAGACATCGCTATCACGCGTAGT-GATAACGTCAGC-ATGTCGTCTGGGTACTTACCCCGACCAACTGTGTTTC------G--ATATAATAATTTTTAATTAT-----GTAACAAATTGAACACTCCGCATCC--TTATCAACGTATCCTAAAAATTGTATATTATTGT-TT-AT-CGCTTAATAACTCTAGTAAGTG-AGAATAATTGGTCATTCCGATAC-TGTTAC-AAT--ATTTTA-CACCTTCTTCTAATGAAACGTGG--TAGTTCTCT-TCTGTCGTCTAGTCAGAGTTGCCA-CCTTTTCCCT-CGAGCGAGCT
gi|10 : acCAGTAAA-CTT--CTTTTATAA--CGTA--GTT-GG--TTA-TAAA----G-TATCAC-CGGA-T-A-TAACGT-AGCCATTCCGT---GGT------CCCAAC-AA---TGTTCCTACATGT--ATATA------TTTCATTATTTAAAA----AAA---AACAC--CGCT-----T-AT-AACGTATC--------TGTAaacggaaggtgatgacattattttagtccacatgtgttccttagtgttgtctatctcatcagctacctattcctgtaattgcggtaatttttgagttgtgcttttccatttgaattatgatatttacgaaatctgcgtgtaagacgcgacgatacactcacgatagctaatgccggatcagagaaacgctgagtggaccgcgacggcttaatttgtgtgtttgttatcccttattctaaattgtagcgaatcaagggacatttgtttcgcttgatatggtactcatctcccatgtcgtacgtaaatttctcgtgtatataagtgtgactacaccgtaatttctttcttgctttggcaacccataattcagaactatttgtcaatgaataatagatcaaaccaaacaagaaaatatctgcgtaacgagacgttatgtgaaataatctatcatacaatgtactatagaagtgtagatcttgttggaaataattgcttttatgaataaatatcttattctgttgttgtatttttattcttttacgtagcagggaatagtaagcgctcaaaggatgctgcgaaatgttatatctttataaataccttaagtaatatagtattgaaataatctatagagatgcactagcgaagttatgaa
gi|11 : taAGTAAAGCTT--CTTTTATAAA-CGTAAGGTC-GGGGTTA-TAAA----G-TATTCCACGGA-TTG-TAACGT-AGCCATTCCGT---TGT------CCCGAC--A---TGTTCT------T--ATATA------TTTC-TTAT-----A----AAG---AA
gi|13 : CAGTAAA-CTT--CTTTTATAA--CGTA--tcaacc
gi|2 : ttttcgtttataacgtacaccagttataacgtagaatttatcacagtccattgagaTC-GT--TTA-TAAC----G-TA-CAC-CGGT-T-A-TAACGT-AG-AATTC-------AT------CC--AC-A-----GTCCC------TTGAGATA---------CGTTAT-----A----AAA---GA-A----GTTTAC--T-GT-At
gi|3 : gaaatacaccaattcgaaatcggtagaccgcgacgacactcacgatagcaacctgtgcccgacgcttgtgtaccatcaactcagacgatcaaaggacatttgtctgacatccaatggcatgtgtacgtaaattccgtggaaggtgtgaatgacagtattttttctgctttgggaactattaaaacttttgtcaataaatgtgatcaaaccaaacagaaaaccataacggacattttaaaatgatcatcatacaatgtacaatgtagtcttgttgaaataattgctctgtgaaactaaaatgtttactgaaagtgaatttatttatttcttagtaaagataataacaccaaacatacctgcaaatcatttatcaatatactattacgattatagtttgaaatatctataatgcactagcggtttgaaatatattggcggtacgggtattgattacttcggtttCAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----G----AAA---AACAA--CGCTTACGGT-AT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AC--AACGTAG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-AAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
gi|4 : CAGTAAA-CTT--CTTTTATAA--CGTT--GTC-GG--TTA-TAAA----G-TATTAC-CGGA-T-G-TAACAT-AGCCATTCCGT---GGT------CCTGAC-AA---TGTTCT------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGCTTA------T-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AGCGTAG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-ACTAATCC-TAA
gi|7 : -GG--TTA-TAAA----G-TACCAC-CGGA-T-G-TAACG--AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T---TATA------TTTCATTAA-----A----AAA---AACAC--CGCT-------AT-AACGTATC--------TGTATATAAC-ACATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--TTTA-A-CCCCT-CTT---a
gi|8 : taattggactgcaatttgttttaATATAGC-GTATTGATGCGCC-A-TAA----AGTA-GTAAGAAAT--TTGGTC---------CACGTTACCA-TTAATTT-AACACCT-CTT---AT--AACGTGGGGT--ATCTCAACCTG--GTTT---CA-------CACCCTTTTCCCTGCGATC-AGCTTGGGAGATCGGAGTATTAGTCAACAGTTTGGTGAACTTCAATCGGCTGATCCGTAActtactaatgtag
blockSeqs : G . A AG . GG . . . A . TG . . . AA TACATGT . TTAAAA . C TACGGT . . . G G . . . A . . A C . TA . A . . . GGTA A . . . C G . G G A A A G G
blockSeqs : . . . . . . . . . . . A . . . AA TTG . A . A TACT . . . . . . . . . . . . . . . . . . . . TC . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . AA T . A . C TA . . . . . . . . . . . . . . . . . . . . TC . . . . . . .
blockSeqs : . . . . . . . . . . . G . . . AA T . G . C T . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . G . . . A T . A . . . .
blockSeqs : . . . . . . . G . . . A T . A .
blockSeqCons : ** ** ** **** G** *** ****** AA**** ****** A********* *** C** TAT**** ******** **** ** ********* ***
originalCons : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGCTTAC--T-AT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AACGTGG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
finalCons : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-TG--TAACGT-AGCCATTCCGT---GGT------CCCGACAA----TGTTCC------T--ATATA------TTTCATTATA---------AAA---AACAC--CGCTTAT----AT-AACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AACGTGG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AAAATACACCAATTCGAAATCGGTAAACCGCGACGACAATCACAATAGCAATGACGACGAACCTGTGCCCGACGCGTATGTACATGTACCATCAACTCAGACGATCAAAGCACATTGTCTCGACATACCATGTACATAAAATTCCGTGAAGGTGTAAAATGACAGTATTTTTTTCTCTTTGCAAACTATTCAAACTTATTGTCAATAAATGTGATCAAACCAACAGACAAACCATAACGGACTTTTTTAAATTGATTCATCATTACAATG
Unaligned ( gi|6 ): TGAATTTATTTATTTCTTAGTACCAAGAAATCAACCCAAACATTACTGCAGAATCATTTATCAATATACATATATATAATAGTTTGATAATATCTATAAGCCACTAGTGGTTTGAAAAATTAATGTTGGCGGTACGGTATTGATTACTTCCGGTTTTCGTTTTAACGCTACACCGGTTAAAACGAGAAATTTATTCACCAAG
Unaligned ( gi|9 ): AATATTGATAACACGTACATGTACACCATTGGTTTAAGAAATAAATTGATACTGGCACCGAGTATTTCCGGTCTATGTTTATAATATACACTGGTTATAGCGTAGGATCTATCACAGAGATACATTACAAAATGAGTTCACTGTA
Unaligned ( gi|12 ): AAGTACTTCCGGTCTCTTGTTACAACGTAAACCGGTTAAAACGTAAACTTTATTACAGCCCCACGAGATGCATTATAACAGAAGTTTACTGTA
Unaligned ( gi|14 ): TTATAATGTGCATGGCTTATAACATAGAATTGTAAACCATTCCTTCAGGTACATCATAAATGAGATTTACTGTA
Unaligned ( gi|15 ): GGTATTTGAGTTGTTGTTCCAGGAAATGTATTTGAATAAAAT
Unaligned ( gi|16 ): TAGTTTAAAATATCTATAATGCACTAGCGGTTTGAAA
Alignments
lowQualScore : 11 11 1111 1 111 111111 111111 111111111 111111 2222222222 111 11 3333333333333 22222222 1111 11 333333333 11 111 11 111111 1 11 111 3333333 1 1 1 1 1 1 1 1 1
lowQualScore : 5 77 33 33 5 77 5 2222 5 0 1 5 666 5 0 000 666666 111111 888888888 666666 0 1111111111 000 11 3333333333333 99999999 8 0 8 8 0 8 7777 8 8 11 222222222 8 8 8 11 8 8 8 444 33 888888 0 33 777 2222222 0 0 0 3 3 3 3 3 3 6
lowQualScore : . .. .. .. . .. . .... . . . . ... . . ... ...... ...... ......... ...... . .......... ... .. ............. ........ . . . . . . .... . . .. ......... . . . .. . . . ... .. ...... . .. ... ....... . . . . . . . . . .
lowQualScore : 7 99 66 66 7 99 7 1111 7 1 4 7 000 7 7 000 444444 777777 777777777 444444 1 7777777777 000 00 6666666666666 00000000 0 8 0 0 8 0 0000 0 0 00 000000000 0 0 0 00 0 0 0 000 88 888888 0 88 555 5555555 0 0 0 3 3 3 3 3 3 7
consensus : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGC----TTA---TATAACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AACGTGG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
Reference ( family-1051 ) : CAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGC----TTA---TATAACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AACGTGG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAA
gi|1 : GTAAA-CTTGACTTTTATAAAACGTAT-GTCAGG--TTAGTAGACATCGCTATCACGCGTAGT-GATAACGTCAGC-ATGTCGTCTGGGTACTTACCCCGACCAACTGTGTTTC------G--ATATAATAATTTTTAATTAT-----GTAACAAATTGAACACTCCGCATCCTTA---T-CAACGTATCCTAAAAATTGTATATTATTGT-TT-AT-CGCTTAATAACTCTAGTAAGTG-AGAATAATTGGTCATTCCGATAC-TGTTAC-AAT--ATTTTA-CACCTTCTTCTAATGAAACGTGG--TAGTTCTCT-TCTGTCGTCTAGTCAGAGTTGCCA-CCTTTTCCCT-CGAGCGAGCT
gi|10 : acCAGTAAA-CTT--CTTTTATAA--CGTA--GTT-GG--TTA-TAAA----G-TATCAC-CGGA-T-A-TAACGT-AGCCATTCCGT---GGT------CCCAAC-AA---TGTTCCTACATGT--ATATA------TTTCATTATTTAAAA----AAA---AACAC--CGC----T-----TATAACGTATC--------TGTAaacggaaggtgatgacattattttagtccacatgtgttccttagtgttgtctatctcatcagctacctattcctgtaattgcggtaatttttgagttgtgcttttccatttgaattatgatatttacgaaatctgcgtgtaagacgcgacgatacactcacgatagctaatgccggatcagagaaacgctgagtggaccgcgacggcttaatttgtgtgtttgttatcccttattctaaattgtagcgaatcaagggacatttgtttcgcttgatatggtactcatctcccatgtcgtacgtaaatttctcgtgtatataagtgtgactacaccgtaatttctttcttgctttggcaacccataattcagaactatttgtcaatgaataatagatcaaaccaaacaagaaaatatctgcgtaacgagacgttatgtgaaataatctatcatacaatgtactatagaagtgtagatcttgttggaaataattgcttttatgaataaatatcttattctgttgttgtatttttattcttttacgtagcagggaatagtaagcgctcaaaggatgctgcgaaatgttatatctttataaataccttaagtaatatagtattgaaataatctatagagatgcactagcgaagttatgaa
gi|11 : taAGTAAAGCTT--CTTTTATAAA-CGTAAGGTC-GGGGTTA-TAAA----G-TATTCCACGGA-TTG-TAACGT-AGCCATTCCGT---TGT------CCCGAC--A---TGTTCT------T--ATATA------TTTC-TTAT-----A----AAG---AA
gi|13 : CAGTAAA-CTT--CTTTTATAA--CGTA--tcaacc
gi|2 : ttttcgtttataacgtacaccagttataacgtagaatttatcacagtccattgagaTC-GT--TTA-TAAC----G-TA-CAC-CGGT-T-A-TAACGT-AG-AATTC-------AT------CC--AC-A-----GTCCC------TTGAGATA---------CGTTAT-----A----AAA---GAt
gi|2 : gaaatacaccaattcgaaatcggtagaccgcgacgacactcacgatagcaacctgtgcccgacgcttgtgtaccatcaactcagacgatcaaaggacatttgtctgacatccaatggcatgtgtacgtaaattccgtggaaggtgtgaatgacagtattttttctgctttgggaactattaaaacttttgtcaataaatgtgatcaaaccaaacagaaaaccataacggacattttaaaatgatcatcatacaatgtacaatgtagtcttgttgaaataattgctctgtgaaactaaaatgtttactgaaagtgaatttatttatttcttagtaaagataataacaccaaacatacctgcaaatcatttatcaatatactattacgattatagtttgaaatatctataatgcactagcggtttgaaatatattggcggtacgggtattgattacttcggtttCAGTAAA-CTT--CTTTTATAA--CGTA--agtttactgta
gi|3 : gaaatacaccaattcgaaatcggtagaccgcgacgacactcacgatagcaacctgtgcccgacgcttgtgtaccatcaactcagacgatcaaaggacatttgtctgacatccaatggcatgtgtacgtaaattccgtggaaggtgtgaatgacagtattttttctgctttgggaactattaaaacttttgtcaataaatgtgatcaaaccaaacagaaaaccataacggacattttaaaatgatcatcatacaatgtacaatgtagtcttgttgaaataattgctctgtgaaactaaaatgtttactgaaagtgaatttatttatttcttagtaaagataataacaccaaacatacctgcaaatcatttatcaatatactattacgattatagtttgaaatatctataatgcactagcggtttgaaatatattggcggtacgggtattgattacttcggttttcgtttataacgtacaccggttataacgtagaattcatccacagtcccttgagaCAGTAAA-CTT--CTTTTATAA--CGTA--GTC-GG--TTA-TAAA----G-TATCAC-CGGA-T-G-TAACGT-AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T--ATATA------TTTCATTAT-----G----AAA---AACAA--CGC----TTACGGTATAACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AC--AACGTAG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-AAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-GCTAATCCGTAAta
gi|4 : CAGTAAA-CTT--CTTTTATAA--CGTT--GTC-GG--TTA-TAAA----G-TATTAC-CGGA-T-G-TAACAT-AGCCATTCCGT---GGT------CCTGAC-AA---TGTTCT------T--ATATA------TTTCATTAT-----A----AAA---AACAC--CGC----TTA---TA--ACGTATC--------TGTATATAAC-GTATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--ATTT-A-CACCT-CTT---AT--AGCGTAG--T--CTCTCA-CCTG--GTTT---CA-------CA-CCTTTTCCCT-CGATC-AGCTC-CGAGATC-GAGTATTAGTC-ACGGTTTGGTG-ACTTC-ATC-ACTAATCC-TAA
gi|7 : -GG--TTA-TAAA----G-TACCAC-CGGA-T-G-TAACG--AGCCATTCCGT---GGT------CCCGAC-AA---TGTTCC------T---TATA------TTTCATTAA-----A----AAA---AACAC--CGC----T------ATAACGTATC--------TGTATATAAC-ACATT-AT-CGCCTA-TAA----AGTA-GTA-GAAAT--TTGGTC---------C-CGTTAC-A-T--TTTA-A-CCCCT-CTT---a
gi|8 : taattggactgcaatttgttttaATATAGC-GTATTGATGCGCC-A-TAA----AGTA-GTAAGAAAT--TTGGTC---------CACGTTACCA-TTAATTT-AACACCT-CTT---AT--AACGTGGGGT--ATCTCAACCTG--GTTT---CA-------CACCCTTTTCCCTGCGATC-AGCTTGGGAGATCGGAGTATTAGTCAACAGTTTGGTGAACTTCAATCGGCTGATCCGTAActtactaatgtag
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AAAATACACCAATTCGAAATCGGTAAACCGCGACGACAATCACAATAGCAATGACGACGAACCTGTGCCCGACGCGTATGTACATGTACCATCAACTCAGACGATCAAAGCACATTGTCTCGACATACCATGTACATAAAATTCCGTGAAGGTGTAAAATGACAGTATTTTTTTCTCTTTGCAAACTATTCAAACTTATTGTCAATAAATGTGATCAAACCAACAGACAAACCATAACGGACTTTTTTAAATTGATTCATCATTACAATG
Unaligned ( gi|6 ): TGAATTTATTTATTTCTTAGTACCAAGAAATCAACCCAAACATTACTGCAGAATCATTTATCAATATACATATATATAATAGTTTGATAATATCTATAAGCCACTAGTGGTTTGAAAAATTAATGTTGGCGGTACGGTATTGATTACTTCCGGTTTTCGTTTTAACGCTACACCGGTTAAAACGAGAAATTTATTCACCAAG
Unaligned ( gi|9 ): AATATTGATAACACGTACATGTACACCATTGGTTTAAGAAATAAATTGATACTGGCACCGAGTATTTCCGGTCTATGTTTATAATATACACTGGTTATAGCGTAGGATCTATCACAGAGATACATTACAAAATGAGTTCACTGTA
Unaligned ( gi|12 ): AAGTACTTCCGGTCTCTTGTTACAACGTAAACCGGTTAAAACGTAAACTTTATTACAGCCCCACGAGATGCATTATAACAGAAGTTTACTGTA
Unaligned ( gi|14 ): TTATAATGTGCATGGCTTATAACATAGAATTGTAAACCATTCCTTCAGGTACATCATAAATGAGATTTACTGTA
Unaligned ( gi|15 ): GGTATTTGAGTTGTTGTTCCAGGAAATGTATTTGAATAAAAT
Unaligned ( gi|16 ): TAGTTTAAAATATCTATAATGCACTAGCGGTTTGAAA