lowQualScore : 11111111111111111 11111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000 33 44444444444444444444444444444 44 1 1 666 22 2 555555555555 1 11 1 11111 333 11 11 2222222222 111 111 1 2222222 222 1 444444444444444444444444444444444444444444444444444444444444444444444444444 111 55555555555555555555555555555555 4444444444444444444444444444444 11111 111 1111 2222222222222222 111 1111 111 111 111 11111 1111 4444444444444444444444 111 222 6666666666 77777777777777 1111 3333 11
lowQualScore : 6 22222222222222222 44 66666666666666666666666666666 6 6 66 5 5 111 66 0 666666666666 3 11 7 5 9 88888 222 3 33 00 1111111111 3 111 000 0 0 7777777 000 5 666666666666666666666666666666666666666666666666666666666666666666666666666 6 222 6 6 6 44444444444444444444444444444444 77 7777777777777777777777777777777 33333 000 2222 5 77 6666666666666666 111 6 77 888 99 6 6 3 1 4444 111 111 6 6 6 6 6 6 777 5 5 22222 5555 9 4444444444444444444444 1 5 333 5 5 5 333 5 5555555555 5 66 5 5 5 5 66 4 4 44444444444444 7 2 888 5 7777 0 1 8888 33 7
lowQualScore : . ................. .. ............................. . . .. . . ... .. . ............ . .. . . . ..... ... . .. .. .......... . ... ... . . ....... ... . ........................................................................... . ... . . . ................................ .. ............................... ..... ... .... . .. ................ ... . .. ... .. . . . . .... ... ... . . . . . . ... . . ..... .... . ...................... . . ... . . . ... . .......... . .. . . . . .. . . .............. . . ... . .... . . .... .. .
lowQualScore : 0 00000000000000000 00 00000000000000000000000000000 0 0 00 0 0 000 00 0 777777777777 3 33 3 3 8 55555 888 2 22 00 8888888888 2 000 222 0 8 8888888 888 0 222222222222222222222222222222222222222222222222222222222222222222222222222 7 888 7 7 7 33333333333333333333333333333333 99 1111111111111111111111111111111 66666 000 1111 7 99 0000000000000000 777 7 33 333 22 7 7 5 7 2222 777 000 7 7 7 7 7 7 000 7 7 33333 2222 5 8888888888888888888888 3 0 888 0 0 0 888 0 6666666666 0 99 0 0 0 0 99 4 4 88888888888888 0 2 888 7 0000 8 4 5555 22 3
consensus : NNNNNNNNGCAACACTGTTGTAGTT--TAG-CATTTAAGCCACTACATTTGAAAGTATTTACTTCGCGTTGTGTTTTTGA-GAGTATTATACAAGTAAACTACCCTTGTATTTGAGTCGCCTATAGTGAGGCTGGTGATTAATATGATAA-AT---------AGT-TTTGAACCTTT-GATCAAATG---A-ACAAAA--CGTAAG-ACAAAAAATA--TCAANTAGCAAA-A-TAATA-ATC-CGGGG-----AATGAA--CGTGGCTC-----AAGGT-A------AGT-TAACA--AGAAAA------------ATAGANA-AATA-------A-------TGAAT-GAATGAGGGG--GAGACTA-CT-C-CTGATA-----A-TT-A---CCTTG----------TTACAAGGC--TTGGT----TC-AGCA------GA--AGC------CCCG----AGCACG---GTTG----TACC-CGGGTTTAAA--TAGTG--TTC--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTNA-G-AAG-TAACC-AA-T-GAAATG--NTTTGTAAT-AAAATGCGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTTT------------T-CATTATA-ATAA-A---CA-AA-T-GGA--A-TACGGAGATACTCCAAGA-TA--GGAA-TT-T-A-C--ATA-GATGAGTAA-GTAG-ACT-AAGT---AATAAATAATAGA---G-ATC----ATATATACAC-CTATACTA-CACACA
Reference ( gi|2 ) : TTCATAGCGTAACA-TG--GTAGTTATTGGACATTTAAGCCACTACTATTGAAAGTAT--A-TTCGCGTT-TGTTT--GATGA----TACATAAGTAG-CTAACCTTGTAGTTG--CCGCCTATAGTGAGGCTGGTAATTAA-ATGATAA-AT---------AGT-TTTAAACCTTTTGATCAAATA---A-ACAAAA--CGTAAG-ACAAAAAATA--TCAATTAACAAA-A-TAATA-ATC-CAGGG-----AATGAA--TGTGGCT------AAGGT-A------ACT-TAACAC-AGAAAA------------ATAG-GA-AA-A-------A-------TGAAT-GAATGAGGGG--GAGACTA-CT-C-CTGATA-----A-TT-A---C-TTG----------TTTCAAGGC--TTGGC----TC-AGCA------GA--AGC------CCCG----AGCACA---GTTG----TACC-CGGGTTTAAA--TAGTGT-TTC--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTTA-G-AAG-TAACC-AA-T-GAAATG--ATTTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTTT------------T-CACTAT--ATAA-A---CA-AA-T-GG---A-TACG----------AAGA-TA--GGAA-TT-T-A-C--ATA-GATGAGTAA-GTAG-ACT-AAGTAT-AATGAATAATAGA---G-ATC----ATATATACAT-C-ATACTA-CACACA
gi|1 : GCAACACTGTTGTAGTT--TAG-CATTTAAGCCACTACATTTGAAAGTATTTACTTCGCGTTGTGTTTTTGA-GAGTATTATACAAGTAAACTACCCTTGTATTTGAGTCGCCTATAGTGAGGCTGG--ATTAATATAATAATAG---------AGT-TT--AACCTTT-GATCAA-TA---A-ACAAAA---GTA-G-ACAAAA--TA--TCAAT---CAAACA-TAA-----C-CAG-------AATGAA---GTG-CT------AAGGT-A------AGT-TAA----AAGAAA------------ATAGAGA-AATA-------A-------TGAAT-GAATGAAGGG--GATACTAACT-CTCTGATA-----ACTT-ATACC-TTG----------TTACAAGGC--T-GG-----TC-AGCAA-----GA--AGC------CGCG-----GCACA---GT-G----TACC--GGTTTTAAA--TAGTGG-T-C--TCA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TAAGATTT----GATAGT---AAA-TTA-G-AAG-TAACC-AA-T-G-AAT---ATTTGTAAT-AAAATACGTT-TG-----AAATAAA----GATAACTCTCTT-CGTTT------------TCCATTA---ATAA-AC--CATAA-T-GG---A--ATC----------AAGA--A--GTAA-TT-T-A-T--ATA-GATGAGTAATGTAG-ACTAAAGTTTAAATAAGTAA-AGA---GAATC----A-AAATACAC-CTATAAT--CACACA
gi|3 : gttcaaacgTGAGGCTGGTGATTAA-ATGATAG-ATATTGAATAAAGT-TTTGAGTC-TTTAATAAGTTG---A-GTAAAA--TGTAAG----AGAAATA--CCAAATGGCAAA-A-TAGTA-ATCTTGGGG-----AATAAA--TGGGGCTC-----AAG---------------------AGAAAA------------AT---CA-TA-ATTTTGTTA-------TGAA--AAAAGAGGGC--AAGACAA-CT-C-CTGATA-----T-TT-attatttaagattttatctctctcttttcctat
gi|4 : aagtaaagtgtttatcttgggtaagtttgagtctaccttgatATAA-AT---------AGCATTTAAACCTGTGGATCAAATAAATA-ACAAAAATCGTAAGAACAAAAAATAATTCAATAAGC-AA-A-TAATATATC-CAGGAACGATAATGAAATCGTGGCT------AAGGTCA------AGTATAATACTAG--AA------------ATAG-AAGAA-A-------A-------T-AATAGAATGAGGGGGCGAGACTA-CTGC-CTGATA-----A-TT-A---C-TTGGTTACGATATTTCCTAGGCGGCTGGTGCAATCAAGCA------GAGTAGCT-----CTCGAAGCAGCATAGGTGTTGCCTTTACCACGAGTTTAAAGTCAGTGCGTTCTATTATCTCATAT---AGCAAC-GAAGGGTAATAAAGTGAACTCTTATGTATGATTTCCTGAATAGTTAAGAATTCATG-AAGTTCACCAAA-TGGAAATGCCAATTGTAATAAAAATACGTCGTGTAGCGAAATAAAAAGGGAGAAACCTCCTCTTTTT------------gtaccctgatgctcttagcatattaaagtatcaaagaaggagttagctctaatatgacttgattgtaaattcagaagtaaccaataaaaagttttgtaatgaaatgcatttgaaaatcaaagataactctcctcctatttcatgaaataaacaaatcgaatatgaagacaggggaatttagtatgtacatagacaatttaatagtagaactgaacttaaatatgtacatagatactaccatacaaatataaagtgctgtaattccactttttttttttttttttttttgtat
gi|5 : aAATG---AGATAAAA---GTAAA-ACAAAACGTA----GAATAACAAA-AGTGATA-ATT-TCGGG-----AATGGA--TGTG-CTCTGTGAAAAAT-ATTTTTAACT-AAACA--AGAAAAGGAGAAGAAATAATAA-TA-AA-A-------ACTTACAGTGAAT-GAATGAGGGG---AGACTA-CT-C-CTGATA-----T-TTTA---CCTTG----------TTGCAAGGT--CTG-------------------------T------CCCG----AGCACG---GTTA----TGCT-CGGGTTTAAA--T------------------A-AT---AG-AAT-AAA-G--A--AAAGTTAACTC-TGT-TATGA-TT----GATAGT---TAA---A-GAAAG-AAACC-AATT-AAAATG---TTTTTAAT-AAAATACGTT-TG----AAAATAAA----TATAACTCTCTTCCGTTTATAATTTATATAT-AAATATGCATAA-A---CA-AA-T-AGAAAA-TACG----------AAGA-TA--AGAATTT-T-A-C--ATT-GATGAGTAA--TAG-CC------AT-GATAAATA
gi|10 : taatatttaactcgcttggagagtt-AGAAAA------------ATAGAGA-AATA-------A-------TGAAT-GAATGAAGGG--GAGACTA-CT-C-CTGATA-----A-TT-AC--C-TTG----------AAACAAGGC--TTGGC----TC-AG---------------------------------CA---GTTG----TACC-CGGGTTTAAA--TAGTGT-T
gi|9 : AAT-GAATGATGGG--AAGACTA-CT-C-TTGATATTGATA-TTTA---CCTTA----------TTAAAAGGT--TTGGC----TT-AGTA------GA--AAT------CCCG----AGCACA---GTTG----TGCT-CGGGTTTAAA--TACTG--TTC--TTA--c
gi|7 : CAAGGC--TTGGT----TC-AGCAGAAGCAGA--AGC------CCCG----AGCACG---GTTG----TACT-CGGGTTTAAA--TAGTG--TTC--TTA--AAA-AT---AG-AATAGAA-AATA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTAA-G-AAG-TAACC-AA-T-GAAATG--TTTTGTAAT-AAAATGCATT-TG----AAAATAAA---GGATAACTCTCTTCCG-TT------------T-CAATATA-ATCA-A---CA-AA-T-GGA--A-TACGGAGATACTCCGAGA-TA--GGAA-TT-T-A-C--ATA-GATGAGTAA-GT-----T-A------AATAAATGATAGA---G-AT
gi|6 : CAAGGC--TTGGT----TC-AGCA------GA--AGCAGAAGCCCCG----AGCACG---GTTG----TACT-CGGGTTTAAA--TAGTGT-T-C--TTA--AAA-AT---AG-AAT-GAA-AATA--AGAGTGAACTC-TAA-TA-GATTT----GATAGT---AAATTAA-G-AAG-TAACC-AA-T-GAAATG--TTTTGTAAT-AAAATGCATT-TG----AAAATAAA---GGATAACTCTCTTCCG-TT------------T-CA-TATA-ATCA-A---CA-AA-T-GGA--A-TACGGAGATACTCCGAGA-TA--GGAA-TT-TAA-C--ATA-GATGAGTAA-GT-----T-AA-----AATAAATGATAGA---G-ATC----ATATAT
gi|3 : TC--TTA--GCATATTAAAG-TAT-CAA-AGAA--GGAGTTAGCTC-TAA-TATGACTT----GATTGT---AAATTCA-G-AAG-TAACC-AA-T-AAAAAG--TTTTGTAAT-GAAATGCATT-TG----AAAATCAA---AGATAACTCTCCTCCTATT------------T-CATGAA--ATAA-A---CA-AA-TCGA---A-TATG----------AAGA-CAGGGGAA-TT-T-AGT--AT-------GTAC-ATAG-AC---AAT-----TTAATAGTAGAACTG-AACTTAAATATGTACATAG-ATACTACCATACAgtaggactccaaagtgcgatggta
gi|8 : aagtaaagtgtttatcttgggtaagtttgagtctaccttgattgaggctggtgattaaatgatagatattgaataaagttttgagtctttaataagttgagtaaaatgtaagagaaataccaaatggcaaaatagtaatcttggggaataaatggggctcaagagaaaaatcataattttgttatgaaaaaagagggcaagacaactcctgatatttgtaccctgatgcATG--ATTTA-----AAAATATGTT-TG----AAAATAAA---AGATAACTCTCCTCCGGTT------------T-CATAAA--ATAACATTTCA-AATT-GA---A-TACA----------AAGA-TA--GGAA-TT-T-A-C--ATA-GACAAGTAA-ATTGAACTGAAGTTC-AATAAATATTAAA---aatataaagtgctgtaattccactttttttttttttttttttttgtat
gi|11 : TAAA---GGATAACTCTCTTCCGTTT------------T-CA-TATA-ATCA-A---CA-AA-T-GGA--A-TACGGAGATACTCCGAGA-TA--GGAA-TT-T-A-C--ATA-GATGAGTAA-GT-----T-A------AATAAATGATAGA---G-Ataatgaaatggagatgatttacaccaatcctaagtacta
gi|12 : -A---CA-AA-T-GG---AATACG----------AAGAATA--GGAA-TTGT-A-CCAATAAGATG-GTAA-GTAA-TCTGAAGTA---ATAAATA-TAGA---G-ATC----CTATATACAC-CTATACTA-C-CAC
gi|13 : TA-GATGAGTAA-GTAG-ACTAAAGTTA-AATAATTAACAGA---G-ATT----ATAAACACAC-CTATACTA-C
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TAAAATTTTCAAGTATAGAGCTATACATATGTAGGACTCCAAAGTGCGATG
Unaligned ( gi|15 ): ATATATGTAGGACTCCAAAGTGTGATGGTACT
Unaligned ( gi|16 ): ATGTTTGTAGGACTCCAAAGTGCGATGGTAC
Alignments
lowQualScore : 1 11 22 2 2222 1 11 2222222 222 111111 1 11 2 1 444444444 1 111 11111 222 111 111 22222 222 1 44444444444444444444444444444 111 1111 4444444444444444 2222222222222 222222222 1111111 33333333333333 11111 1 111 1111 111 1111 11111 2222222222222 5555555555 55555555555555555 222222222222 1111
lowQualScore : 5 88 77 0 88 4444 5 88 5555555 7 3 333 888888 7 3 11 3 0 000000000 0 77 444 6 66666 444 0 8 5 444 7777 666 0 8 999 00000 000 0 88888888888888888888888888888 1 666 4444 4444444444444444 1 999 5 5 5 6666666666666 000000000 66 0000000 44444444444444 00000 9999 9999 4 66 66 4 66 7777 1 000 5 5 5 1 77 5 5 1 0 2222 000 8 5 5 5 5 5 5 1 66 5 5 0000 777 1 7 11111 5 7777777777777 4 777 4 4 66 8888888888 4 4 4 4 66 4 4 22222222222222222 000000000000 777 4 2222 11 7 6 3
lowQualScore : . .. .. . .. .... . .. ....... . . ... ...... . . .. . . ......... . .. ... . ..... ... . . . ... .... ... . . ... ..... ... . ............................. . ... .... ................ . ... . . . ............. ......... .. ....... .............. ..... .... .... . .. .. . .. .... . ... . . . . .. . . . . .... ... . . . . . . . . .. . . .... ... . . ..... . ............. . ... . . .. .......... . . . . .. . . ................. ............ ... . .... .. . . .
lowQualScore : 0 55 55 0 00 5555 0 55 0000000 3 7 333 777777 3 3 00 7 0 000000000 0 55 000 0 00000 222 8 0 6 888 2222 888 8 0 000 00000 666 0 99999999999999999999999999999 7 888 2222 2222222222222222 4 666 7 7 7 1111111111111 000000000 99 9999999 44444444444444 88888 9999 4444 4 11 11 4 11 9999 4 000 7 7 7 7 99 7 7 7 1 1111 000 6 7 7 7 7 7 7 0 99 0 0 6666 888 1 4 11111 0 4444444444444 4 888 4 4 11 4444444444 4 4 4 4 11 0 0 99999999999999999 555555555555 888 4 1111 99 5 7 2
consensus : NNNNNNNNGCAACACTGTTGTAGTTATTGGACATTTAAGCCACTACNNTTGAAAGTATTTACTTCGCGTTGTGTTTTTGATGAGTATTACACAAGTAAACTANC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGGTGATTAA-ATGATAA-ATA---------GT-TTTAAACCTTT-G-ATCAAATAA-A---CAAAA--CGTAAGA-CAAAAAATA--TCAATTAGCAAA-A-TAATA-ATC-CGGGGA-----ATGAA--TGTGGCTC-----AAGGT-AANT-T------AACA-AGAAAAATAGAA--AA----ATAAT----------------GAATGAATGAGGGG--GAGACTA-CT-C-CTGATA-----AT--TT--ACCTTGTTACA---------AGGC--TTGGC----TC-AGCA-GA--AGC------CCCG----AGCACG---GTTG----TACC-CGGGTTTAAA--TAGT--GTT-C--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTNA-G-AAG-TAACC-AA-T-GAAATGNT--TTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TTC-AT-TATA-------ATAA-A---C-A-AATGG--AATACGGAGA-----CGAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GTAG-ACT-AA-G--T---AATAAAT------------AATAGA---GA-TC----ATATATACACCTATACTA-CACACA
Reference ( family-1011 ) : NNNNNNNNGCAACACTGTTGTAGTT--TAG-CATTTAAGCCACTACATTTGAAAGTATTTACTTCGCGTTGTGTTTTTGA-GAGTATTATACAAGTAAACTACC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGGTGATTAATATGATAA-ATA---------GT-TTTGAACCTTT-G-ATCAAATGA-A---CAAAA--CGTAAGA-CAAAAAATA--TCAANTAGCAAA-A-TAATA-ATC-CGGGGA-----ATGAA--CGTGGCTC-----AAGGT-AAGT-T------AACA-AGAAAAATAGAN--AA----ATAAT----------------GAATGAATGAGGGG--GAGACTA-CT-C-CTGATA-----AT--T---ACCTTGTTACA---------AGGC--TTGGT----TC-AGCA-GA--AGC------CCCG----AGCACG---GTTG----TACC-CGGGTTTAAA--TAGT--GTT-C--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTNA-G-AAG-TAACC-AA-T-GAAATGNT--TTGTAAT-AAAATGCGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TTC-AT-TATA-------ATAA-A---C-A-AATGG--AATACGGAGATACTCCAAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GTAG-ACT-AA-G--T---AATAAAT------------AATAGA---GA-TC----ATATATACACCTATACTA-CACACA
gi|1 : GCAACACTGTTGTAGTT--TAG-CATTTAAGCCACTACATTTGAAAGTATTTACTTCGCGTTGTGTTTTTGA-GAGTATTATACAAGTAAACTACC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGG--ATTAATATAATAATAGA---------GT-TT--AACCTTT-G-ATCAA-TAA-A---CAAAA---GTA-GA-CAAAA--TA--TCAAT---CAAACA-TAA-----C-CAG--A-----ATGAA---GTG-CT------AAGGT-AAGT-T------AA-A-AGAAAA-TAGAG--AA----ATAAT----------------GAATGAATGAAGGG--GATACTAACT-CTCTGATA-----AC--TTATACCTTGTTACA---------AGGC--T-GGT-----C-AGCAAGA--AGC------CGCG-----GCACA---GT-G----TACC--GGTTTTAAA--TAGT--GGT-C--TCA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TAAGATTT----GATAGT---AAATT-A-G-AAG-TAACC-AA-T-GAA-T-AT--TTGTAAT-AAAATACGTT-TG----AAA-TAAA---G-ATAACTCTCTTC-GTT-----TTCCAT-TA---------ATAA-A---CCATAATGG--AAT------------CAAGA-AGTAA-TT-T-A-T--ATA-GATGAGTAATGTAG-ACT-AAAG--TTTAAATAAGT------------AA-AGA---GAATC----AAA-ATACACCTATAAT--CACACA
gi|10 : gttcaaacg-AGAAAAATAGAG--AA----ATAAT----------------GAATGAATGAAGGG--GAGACTA-CT-C-CTGATA-----AT--T---ACCTTGAAACA---------AGGC--TTGGC----TC-AGCA-------------------------------GTTG----TACC-CGGGTTTAAA--TAGT--GTT-C--attatttaagattttatctctctcttttcctat
gi|11 : TAAA---GGATAACTCTCTTCCGTT-----TTC-AT--ATA-------ATCA-A---C-A-AATGG--AATACGGAGATACTCCGAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GT-----T-A---------AATAAAT------------GATAGA---GA-
gi|12 : -A---C-A-AATGG--AATACGAAGA---------ATAGGAA-TTGT-A-CCAATAAGATG-GTAA-GTAA-TCTGAA-G--T---AATAAAT------------A-TAGA---GA-TC----CTATATACACCTATACTA-C-CAC
gi|13 : TA-GATGAGTAA-GTAG-ACT-AAAG--TTA-AATAATT------------AACAGA---GA-TT----ATAAACACACCTATACTA-C
gi|2 : GTAACA-TG--GTAGTTATTGGACATTTAAGCCACTACTATTGAAAGTAT--A-TTCGCGTT-TGTTT--GATGA----TACATAAGTAG-CTAAC---CTTG--TA--GTTG--CC-GCCTATAGTGAGGCTGGTAATTAA-ATGATAA-ATA---------GT-TTTAAACCTTTTG-ATCAAATAA-A---CAAAA--CGTAAGA-CAAAAAATA--TCAATTAACAAA-A-TAATA-ATC-CAGGGA-----ATGAA--TGTGGCT------AAGGT-AACT-T------AACACAGAAAAATAGGA--AA----A--AT----------------GAATGAATGAGGGG--GAGACTA-CT-C-CTGATA-----AT--T---AC-TTGTTTCA---------AGGC--TTGGC----TC-AGCA-GA--AGC------CCCG----AGCACA---GTTG----TACC-CGGGTTTAAA--TAGT--GTTTC--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTTA-G-AAG-TAACC-AA-T-GAAATGAT--TTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TTC-AC-TAT--------ATAA-A---C-A-AATGG---ATACG----------AAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GTAG-ACT-AA-GTAT---AATGAAT------------AATAGA---GA-TC----ATATATACATC-ATACTA-CACACAca
gi|3 : ttcatagcAAGTAAAGTGTTTATCTTGGGTAAGTTTGAGTCTACCTTGATTGAGGCTGGTGATTAA-ATGATAG-ATATTGAATAAAGT-TTTGAGTCTTT-A-ATAAGTTGA-G---TAAAA--TGTAAGA----GAAATA--CCAAATGGCAAA-A-TAGTA-ATCTTGGGGA-----ATAAA--TGGGGCTC-----AAG--------------------AGAAAAAT-CAT--AATTTTGTTAT----------------GAA-AAAAGAGGGC--AAGACAA-CT-C-CTGATA-----TTTGT---ACCCTG
gi|3 : TTG----TACC-C-----------TGAT--GCT-C--TTA--GCATATTAAAG-TAT-CAA-AGAA--GGAGTTAGCTC-TAA-TATGACTT----GATTGT---AAATTCA-G-AAG-TAACC-AA-T-AAAAAGTT--TTGTAAT-GAAATGCATT-TG----AAAATCAA---AGATAACTCTCCTCCTAT-----TTC-AT-GA-A-------ATAA-A---C-A-AATCG--AATATGAAGA-----CAGG---GGAA-TT-T-AGT--AT-------GTAC-ATAG-AC---A-A--T-----TTAAT------------AGTAGAACTGA-ACTTAAATATGTACATAGATACTACCATACAatgctcttagcatattaaagtatcaaagaaggagttagctctaatatgacttgattgtaaattcagaagtaaccaataaaaagttttgtaatgaaatgcatttgaaaatcaaagataactctcctcctatttcatgaaataaacaaatcgaatatgaagacaggggaatttagtatgtacatagacaatttaatagtagaactgaacttaaatatgtacatagatactaccatacaaatataaagtgctgtaattccactttttttttttttttttttttgtat
gi|4 : aagtaaagtgtttatcttgggtaagtttgagtctaccttgattgaggctggtgattaaatgatagatattgaataaagttttgagtctttaataagttgagtaaaatgtaagagaaataccaaatggcaaaatagtaatcttggggaataaatggggctcaagagaaaaatcataattttgttatgaaaaaagagggcaagacaactcctgatatATAA-ATA---------GCATTTAAACCTGT-GGATCAAATAA-ATAACAAAAATCGTAAGAACAAAAAATAATTCAATAAGCAAA---TAATATATC-CAGGAACGATAATGAAATCGTGGCT------AAGGTCAAGTAT------AATA-CTAGAAATAGAAGAAA----ATAAT----------------A---GAATGAGGGGGCGAGACTA-CTGC-CTGATA-----AT--T---ACTTGGTTACGATATTTCCTAGGCGGCTGGTGCAATCAAGCA-GAGTAGCT-----CTCGAAGCAGCATAGGTGTTGCCTTTACCACGAGTTTAAAGTCAGTGCGTT-CTATTATCTCATAT---AGCAAC-GAAGGGTAATAAAGTGAACTCTTATGTATGATTTCCTGAATAGTTAAGAATTCATG-AAGTTCACCAAA-TGGAAATGCCAATTGTAATAAAAATACGTCGTGTAGCGAAATAAAAAGGGAGAAACCTCCTC--TT-----TTaatataaagtgctgtaattccactttttttttttttttttttttgtat
gi|5 : aAATGAGA---TAAAA---GTAAAA-CAAAACGTA----GAATAACAAA-AGTGATA-ATT-TCGGGA-----ATGGA--TGTG-CTCTGTGAAAAAT-ATTT-TTAACTAAACA-AGAAAAGGAGAAG-AA----ATAATAATAAAAACTTACAGTGAATGAATGAGGGG---AGACTA-CT-C-CTGATA-----TT--TT--ACCTTGTTGCA---------AGGT--CTG--------------------T------CCCG----AGCACG---GTTA----TGCT-CGGGTTTAAA--T-------------------A-AT---AG-AAT-AAA-G--A--AAAGTTAACTC-TGT-TATGA-TT----GATAGT---TAA---A-GAAAG-AAACC-AATT-AAAATGTT--TT-TAAT-AAAATACGTT-TG----AAAATAAA----TATAACTCTCTTCCGTTTATAATTT-ATATATAAATATGCATAA-A---C-A-AATAGAAAATACG----------AAGATAAGAATTT-T-A-C--ATT-GATGAGTAA--TAG--CC-A-----T---GATAAAT------------At
gi|6 : taatatttaactcgcttggagagttCA---------AGGC--TTGGT----TC-AGCA-GA--AGCAGAAGCCCCG----AGCACG---GTTG----TACT-CGGGTTTAAA--TAGT--GTT-C--TTA--AAA-AT---AG-AAT-GAA-AATA--AGAGTGAACTC-TAA-TA-GATTT----GATAGT---AAATTAA-G-AAG-TAACC-AA-T-GAAATGTT--TTGTAAT-AAAATGCATT-TG----AAAATAAA---GGATAACTCTCTTCCG-T-----TTC-A--TATA-------ATCA-A---C-A-AATGG--AATACGGAGATACTCCGAGATAGGAA-TT-TAA-C--ATA-GATGAGTAA-GT-----T-AA--------AATAAAT------------GATAGA---GA-TC----ATATAT
gi|7 : CA---------AGGC--TTGGT----TC-AGCA-GA--AGCAGAAGCCCCG----AGCACG---GTTG----TACT-CGGGTTTAAA--TAGT--GTT-C--TTA--AAA-AT---AG-AATAGAA-AATA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTAA-G-AAG-TAACC-AA-T-GAAATGTT--TTGTAAT-AAAATGCATT-TG----AAAATAAA---GGATAACTCTCTTCCG-T-----TTC-AA-TATA-------ATCA-A---C-A-AATGG--AATACGGAGATACTCCGAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GT-----T-A---------AATAAAT------------GATAGA---GA-Tgtaggactccaaagtgcgatggta
gi|8 : ATGAT--TTA-----AAAATATGTT-TG----AAAATAAA---AGATAACTCTCCTCCGGT-----TTC-A--TAAA-------ATAACATTTC-A-AATTG--AATACA----------AAGATAGGAA-TT-T-A-C--ATA-GACAAGTAA-ATTGAACTGAA-G--TTC-AATAAATATTAAATAATGAAATGGA---GA-TG----AT-T-TACACCAATCCTA-
gi|9 : AATGAATGATGGG--AAGACTA-CT-C-TTGATATTGATAT--TT--ACCTTATTAAA---------AGGT--TTGGC----TT-AGTA-GA--AAT------CCCG----AGCACA---GTTG----TGCT-CGGGTTTAAA--TACT--GTT-C--TTA--agtacta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TAAAATTTTCAAGTATAGAGCTATACATATGTAGGACTCCAAAGTGCGATG
Unaligned ( gi|15 ): ATATATGTAGGACTCCAAAGTGTGATGGTACT
Unaligned ( gi|16 ): ATGTTTGTAGGACTCCAAAGTGCGATGGTAC
Alignments
lowQualScore : 1 11 11 1 2222 1 11 1 2222 222 111111 1 11 1 1 444444444 1 111 111 222 111 22222 111 1 44444444444444444444444444444 1111 1111 4444444444444444 1111111111 222222222222 11111 333333 11111 1 111 1111 111 1111 1111 11111 2222222222222 111 55555555555 55555555555555555 222222222222 1111
lowQualScore : 5 88 88 5 22 4444 5 88 5 4444 7 1 333 888888 7 3 11 3 0 000000000 0 44 444 6 444 8 444 0 88 5 444 7777 0 8 8 0 8 999 00000 444 0 77777777777777777777777777777 1 6666 4444 4444444444444444 1 999 5 5 5 4444444444 77 555555555555 0 11111 5 5 777 333333 00000 9999 9999 4 66 66 4 66 7777 1 000 5 5 5 1 77 5 5 1 0 2222 000 8 5 5 5 5 5 5 1 66 5 5 0000 2222 7 11111 4 7777777777777 4 222 4 66 66666666666 4 4 4 4 66 4 4 22222222222222222 000000000000 777 4 2222 0 7 6 3
lowQualScore : . .. .. . .. .... . .. . .... . . ... ...... . . .. . . ......... . .. ... . ... . ... . .. . ... .... . . . . . ... ..... ... . ............................. . .... .... ................ . ... . . . .......... .. ............ . ..... . . ... ...... ..... .... .... . .. .. . .. .... . ... . . . . .. . . . . .... ... . . . . . . . . .. . . .... .... . ..... . ............. . ... . .. ........... . . . . .. . . ................. ............ ... . .... . . . .
lowQualScore : 0 55 55 5 00 5555 0 55 5 0000 3 0 333 777777 3 3 00 3 0 000000000 0 00 000 0 000 0 222 8 88 6 888 6666 8 0 0 8 0 000 00000 888 0 77777777777777777777777777777 7 2222 2222 2222222222222222 4 666 7 7 7 6666666666 99 666666666666 1 55555 0 0 000 888888 88888 9999 4444 4 11 11 4 11 9999 4 000 7 7 7 7 99 7 7 7 1 1111 000 6 7 7 7 7 7 7 0 99 0 0 6666 4444 4 11111 4 4444444444444 4 222 4 11 33333333333 4 4 4 4 11 0 0 99999999999999999 555555555555 888 4 1111 1 5 7 2
consensus : NNNNNNNNGCAACACTGTTGTAGTTATTGGACATTTAAGCCACTACNNTTGAAAGTATTTACTTCGCGTTGTGTTTTTGATGAGTATTACACAAGTAAACTANC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGGTGATTAA-ATGATAA-AT---------AGT-TTTAAACCTTT-G-ATCAAATA---A-ACAAAA--CGTAAG-ACAAAAAATA--TCAATTAGCAAA-A-TAATA-ATC-CGGGG-----AATGAA--TGTGGCTC-----AAGGT-AANT-T------AACA-AGAAAAATAGA--A-AA----ATAAT----------------GAATGAATGAGGGG--GAGACTA-CT-C-CTGATA-----ATT-TA--CCTTGTTACAA------------GGCTTG-GC--TC-AGCA-GA--AGC------CCCG----AGCACG---GTTG----TACC-CGGGTTTAAA--TAGT--GTT-C--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTNA-G-AAG-TAACC-AA-T-GAAATGNT--TTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TT-CAT-TATA-------ATAA-A---CA-AATGG--AATACGGAGA-----CGAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GTAG-ACT-AA-G--T---AATAAAT------------AATAGA---G-ATC----ATATATACACCTATACTA-CACACA
Reference ( family-1011 ) : NNNNNNNNGCAACACTGTTGTAGTTATTGGACATTTAAGCCACTACNNTTGAAAGTATTTACTTCGCGTTGTGTTTTTGATGAGTATTACACAAGTAAACTANC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGGTGATTAA-ATGATAA-AT---------AGT-TTTAAACCTTT-G-ATCAAATA---A-ACAAAA--CGTAAG-ACAAAAAATA--TCAATTAGCAAA-A-TAATA-ATC-CGGGG-----AATGAA--TGTGGCTC-----AAGGT-AANT-T------AACA-AGAAAAATAGA--A-AA----ATAAT----------------GAATGAATGAGGGG--GAGACTA-CT-C-CTGATA-----ATT-TA--CCTTGTTACAA------------GGCTTG-GC--TC-AGCA-GA--AGC------CCCG----AGCACG---GTTG----TACC-CGGGTTTAAA--TAGT--GTT-C--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTNA-G-AAG-TAACC-AA-T-GAAATGNT--TTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TT-CAT-TATA-------ATAA-A---CA-AATGG--AATACGGAGA-----CGAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GTAG-ACT-AA-G--T---AATAAAT------------AATAGA---G-ATC----ATATATACACCTATACTA-CACACA
gi|1 : GCAACACTGTTGTAGTT--TAG-CATTTAAGCCACTACATTTGAAAGTATTTACTTCGCGTTGTGTTTTTGA-GAGTATTATACAAGTAAACTACC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGG--ATTAATATAATAATAG---------AGT-TT--AACCTTT-G-ATCAA-TA---A-ACAAAA---GTA-G-ACAAAA--TA--TCAAT---CAAACA-TAA-----C-CAG-------AATGAA---GTG-CT------AAGGT-AAGT-T------AA-A-AGAAAA-TAGA--G-AA----ATAAT----------------GAATGAATGAAGGG--GATACTAACT-CTCTGATA-----ACT-TATACCTTGTTACAA------------GGCT-G-G---TC-AGCAAGA--AGC------CGCG-----GCACA---GT-G----TACC--GGTTTTAAA--TAGT--GGT-C--TCA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TAAGATTT----GATAGT---AAATT-A-G-AAG-TAACC-AA-T-G-AAT-AT--TTGTAAT-AAAATACGTT-TG-----AAATAAA----GATAACTCTCTT-CGTT-----TTCCAT---TA-------ATAA-AC--CATAATGG--AAT------------CAAGA-AGTAA-TT-T-A-T--ATA-GATGAGTAATGTAG-ACTAAA-G--TTTAAATAAGT------------AA-AGA---GAATC----A-AAATACACCTATAAT--CACACA
gi|10 : gttcaaacg-AGAAAAATAGA--G-AA----ATAAT----------------GAATGAATGAAGGG--GAGACTA-CT-C-CTGATA-----ATT--A--CCTTGAAACAA------------GGCTTG-GC--TC-AGCA-G------------------------------TTG----TACC-CGGGTTTAAA--TAGT--GTT-C--attatttaagattttatctctctcttttcctat
gi|11 : TAAA---GGATAACTCTCTTCCGTT-----TT-CAT--ATA-------ATCA-A---CA-AATGG--AATACGGAGATACTCCGAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GT-----T-A---------AATAAAT------------GATAGA---G-A
gi|12 : -A---CA-AATGG--AATACGAAGA---------ATAGGAA-TTGT-A-CCAATAAGATG-GTAA-GTAA-TCTGAA-G--T---AATAAAT------------A-TAGA---G-ATC----CTATATACACCTATACTA-C-CAC
gi|13 : TA-GATGAGTAA-GTAG-ACT-AAAG--TTA-AATAATT------------AACAGA---G-ATT----ATAAACACACCTATACTA-C
gi|2 : GTAACA-TG--GTAGTTATTGGACATTTAAGCCACTACTATTGAAAGTAT--A-TTCGCGTT-TGTTT--GATGA----TACATAAGTAG-CTAAC---CTTG--TA--GTTG--CC-GCCTATAGTGAGGCTGGTAATTAA-ATGATAA-AT---------AGT-TTTAAACCTTTTG-ATCAAATA---A-ACAAAA--CGTAAG-ACAAAAAATA--TCAATTAACAAA-A-TAATA-ATC-CAGGG-----AATGAA--TGTGGCT------AAGGT-AACT-T------AACACAGAAAAATAGG--A-AA----A--AT----------------GAATGAATGAGGGG--GAGACTA-CT-C-CTGATA-----ATT--A--C-TTGTTTCAA------------GGCTTG-GC--TC-AGCA-GA--AGC------CCCG----AGCACA---GTTG----TACC-CGGGTTTAAA--TAGT--GTTTC--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTTA-G-AAG-TAACC-AA-T-GAAATGAT--TTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TT-CAC-TAT--------ATAA-A---CA-AATGG---ATACG----------AAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GTAG-ACT-AA-GTAT---AATGAAT------------AATAGA---G-ATC----ATATATACATC-ATACTA-CACACAca
gi|3 : ttcatagcAAGTAAAGTGTTTATCTTGGGTAAGTTTGAGTCTACCTTGATTGAGGCTGGTGATTAA-ATGATAG-ATATTGAATAAAGT-TTTGAGTCTTT-A-ATAAGTTG---A-GTAAAA--TGTAAG----AGAAATA--CCAAATGGCAAA-A-TAGTA-ATCTTGGGG-----AATAAA--TGGGGCTC-----AAG--------------------AGAAAAAT-CA--T-AATTTTGTTAT----------------GAA-AAAAGAGGGC--AAGACAA-CT-C-CTGATA-----TTTGTA--CCCTG
gi|3 : TTG----TACC-C-----------TGAT--GCT-C--TTA--GCATATTAAAG-TAT-CAA-AGAA--GGAGTTAGCTC-TAA-TATGACTT----GATTGT---AAATTCA-G-AAG-TAACC-AA-T-AAAAAGTT--TTGTAAT-GAAATGCATT-TG----AAAATCAA---AGATAACTCTCCTCCTAT-----TT-CAT-GA-A-------ATAA-A---CA-AATCG--AATATGAAGA-----CAGG---GGAA-TT-T-AGT--AT-------GTAC-ATAG-AC---A-A--T-----TTAAT------------AGTAGAACTG-AACTTAAATATGTACATAGATACTACCATACAatgctcttagcatattaaagtatcaaagaaggagttagctctaatatgacttgattgtaaattcagaagtaaccaataaaaagttttgtaatgaaatgcatttgaaaatcaaagataactctcctcctatttcatgaaataaacaaatcgaatatgaagacaggggaatttagtatgtacatagacaatttaatagtagaactgaacttaaatatgtacatagatactaccatacaaatataaagtgctgtaattccactttttttttttttttttttttgtat
gi|4 : aagtaaagtgtttatcttgggtaagtttgagtctaccttgattgaggctggtgattaaatgatagatattgaataaagttttgagtctttaataagttgagtaaaatgtaagagaaataccaaatggcaaaatagtaatcttggggaataaatggggctcaagagaaaaatcataattttgttatgaaaaaagagggcaagacaactcctgatatATAA-AT---------AGCATTTAAACCTGT-GGATCAAATAAATA-ACAAAAATCGTAAGAACAAAAAATAATTCAATAAGC-AA-A-TAATATATC-CAGGAACGATAATGAAATCGTGGCT------AAGGTCAAGTAT------AATA-CTAGAAATAGAAGA-AA----ATAAT----------------A---GAATGAGGGGGCGAGACTA-CTGC-CTGATA-----A-T-TA--CTTGGTTACGATATTTCCTAGGCGGCTGGTGCAATCAAGCA-GAGTAGCT-----CTCGAAGCAGCATAGGTGTTGCCTTTACCACGAGTTTAAAGTCAGTGCGTT-CTATTATCTCATAT---AGCAAC-GAAGGGTAATAAAGTGAACTCTTATGTATGATTTCCTGAATAGTTAAGAATTCATG-AAGTTCACCAAA-TGGAAATGCCAATTGTAATAAAAATACGTCGTGTAGCGAAATAAAAAGGGAGAAACCTCCTC--TT-----TT-aatataaagtgctgtaattccactttttttttttttttttttttgtat
gi|5 : aAATG---AGATAAAA---GTAAA-ACAAAACGTA----GAATAACAAA-AGTGATA-ATT-TCGGG-----AATGGA--TGTG-CTCTGTGAAAAAT-ATTT-TTAACTAAACA-AGAAAAGGAGA--AGAA----ATAATAATAAAAACTTACAGTGAATGAATGAGGGG---AGACTA-CT-C-CTGATA-----TTT-TA--CCTTGTTGCAA------------GGTCTG-------------------T------CCCG----AGCACG---GTTA----TGCT-CGGGTTTAAA--T-------------------A-AT---AG-AAT-AAA-G--A--AAAGTTAACTC-TGT-TATGA-TT----GATAGT---TAA---A-GAAAG-AAACC-AATT-AAAATGTT--TT-TAAT-AAAATACGTT-TG----AAAATAAA----TATAACTCTCTTCCGTTTATAATT-TATATATAAATATGCATAA-A---CA-AATAGAAAATACG----------AAGATAAGAATTT-T-A-C--ATT-GATGAGTAA--TAG--CC-A-----T---GATAAAT------------At
gi|6 : taatatttaactcgcttggagagttCAA------------GGCTTG-GT--TC-AGCA-GA--AGCAGAAGCCCCG----AGCACG---GTTG----TACT-CGGGTTTAAA--TAGT--GTT-C--TTA--AAA-AT---AG-AAT-GAA-AATA--AGAGTGAACTC-TAA-TA-GATTT----GATAGT---AAATTAA-G-AAG-TAACC-AA-T-GAAATGTT--TTGTAAT-AAAATGCATT-TG----AAAATAAA---GGATAACTCTCTTCCG-T-----TT-CA--TATA-------ATCA-A---CA-AATGG--AATACGGAGATACTCCGAGATAGGAA-TT-TAA-C--ATA-GATGAGTAA-GT-----T-AA--------AATAAAT------------GATAGA---G-ATC----ATATAT
gi|7 : CAA------------GGCTTG-GT--TC-AGCA-GA--AGCAGAAGCCCCG----AGCACG---GTTG----TACT-CGGGTTTAAA--TAGT--GTT-C--TTA--AAA-AT---AG-AATAGAA-AATA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTAA-G-AAG-TAACC-AA-T-GAAATGTT--TTGTAAT-AAAATGCATT-TG----AAAATAAA---GGATAACTCTCTTCCG-T-----TT-CAA-TATA-------ATCA-A---CA-AATGG--AATACGGAGATACTCCGAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GT-----T-A---------AATAAAT------------GATAGA---G-ATgtaggactccaaagtgcgatggta
gi|8 : ATGAT--TTA-----AAAATATGTT-TG----AAAATAAA---AGATAACTCTCCTCCGGT-----TT-CA--TAAA-------ATAACATTTCA-AATTG--AATACA----------AAGATAGGAA-TT-T-A-C--ATA-GACAAGTAA-ATTGAACTGAA-G--TTC-AATAAATATTAAATAATGAAATGGA---G-ATG----AT-T-TACACCAATCCTA-
gi|9 : AATGAATGATGGG--AAGACTA-CT-C-TTGATATTGATATT-TA--CCTTATTAAAA------------GGTTTG-GC--TT-AGTA-GA--AAT------CCCG----AGCACA---GTTG----TGCT-CGGGTTTAAA--TACT--GTT-C--TTA--agtacta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TAAAATTTTCAAGTATAGAGCTATACATATGTAGGACTCCAAAGTGCGATG
Unaligned ( gi|15 ): ATATATGTAGGACTCCAAAGTGTGATGGTACT
Unaligned ( gi|16 ): ATGTTTGTAGGACTCCAAAGTGCGATGGTAC
Alignments
lowQualScore : 1 11 11 1 2222 1 11 1 2222 222 111111 1 11 1 1 444444444 1 111 111 222 111 22222 111 1 44444444444444444444444444444 1111 1111 4444444444444444 1111111111 222222222222 11111 333333 11111 1 111 1111 111 1111 1111 11111 2222222222222 111 55555555555 55555555555555555 222222222222 1111
lowQualScore : 5 88 88 5 22 4444 5 88 5 4444 7 1 333 888888 7 3 11 3 0 000000000 0 44 444 6 444 8 444 0 88 5 444 7777 0 8 8 0 8 999 00000 444 0 77777777777777777777777777777 1 6666 4444 4444444444444444 1 999 5 5 5 4444444444 77 555555555555 0 11111 5 5 777 333333 00000 9999 9999 4 66 66 4 66 7777 1 000 5 5 5 1 77 5 5 1 0 2222 000 8 5 5 5 5 5 5 1 66 5 5 0000 2222 7 11111 4 7777777777777 4 222 4 66 66666666666 4 4 4 4 66 4 4 22222222222222222 000000000000 777 4 2222 0 7 6 3
lowQualScore : . .. .. . .. .... . .. . .... . . ... ...... . . .. . . ......... . .. ... . ... . ... . .. . ... .... . . . . . ... ..... ... . ............................. . .... .... ................ . ... . . . .......... .. ............ . ..... . . ... ...... ..... .... .... . .. .. . .. .... . ... . . . . .. . . . . .... ... . . . . . . . . .. . . .... .... . ..... . ............. . ... . .. ........... . . . . .. . . ................. ............ ... . .... . . . .
lowQualScore : 0 55 55 5 00 5555 0 55 5 0000 3 0 333 777777 3 3 00 3 0 000000000 0 00 000 0 000 0 222 8 88 6 888 6666 8 0 0 8 0 000 00000 888 0 77777777777777777777777777777 7 2222 2222 2222222222222222 4 666 7 7 7 6666666666 99 666666666666 1 55555 0 0 000 888888 88888 9999 4444 4 11 11 4 11 9999 4 000 7 7 7 7 99 7 7 7 1 1111 000 6 7 7 7 7 7 7 0 99 0 0 6666 4444 4 11111 4 4444444444444 4 222 4 11 33333333333 4 4 4 4 11 0 0 99999999999999999 555555555555 888 4 1111 1 5 7 2
consensus : NNNNNNNNGCAACACTGTTGTAGTTATTGGACATTTAAGCCACTACNNTTGAAAGTATTTACTTCGCGTTGTGTTTTTGATGAGTATTACACAAGTAAACTANC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGGTGATTAA-ATGATAA-AT---------AGT-TTTAAACCTTT-G-ATCAAATA---A-ACAAAA--CGTAAG-ACAAAAAATA--TCAATTAGCAAA-A-TAATA-ATC-CGGGG-----AATGAA--TGTGGCTC-----AAGGT-AANT-T------AACA-AGAAAAATAGA--A-AA----ATAAT----------------GAATGAATGAGGGG--GAGACTA-CT-C-CTGATA-----ATT-TA--CCTTGTTACAA------------GGCTTG-GC--TC-AGCA-GA--AGC------CCCG----AGCACG---GTTG----TACC-CGGGTTTAAA--TAGT--GTT-C--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTNA-G-AAG-TAACC-AA-T-GAAATGNT--TTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TT-CAT-TATA-------ATAA-A---CA-AATGG--AATACGGAGA-----CGAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GTAG-ACT-AA-G--T---AATAAAT------------AATAGA---G-ATC----ATATATACACCTATACTA-CACACA
Reference ( family-1011 ) : NNNNNNNNGCAACACTGTTGTAGTTATTGGACATTTAAGCCACTACNNTTGAAAGTATTTACTTCGCGTTGTGTTTTTGATGAGTATTACACAAGTAAACTANC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGGTGATTAA-ATGATAA-AT---------AGT-TTTAAACCTTT-G-ATCAAATA---A-ACAAAA--CGTAAG-ACAAAAAATA--TCAATTAGCAAA-A-TAATA-ATC-CGGGG-----AATGAA--TGTGGCTC-----AAGGT-AANT-T------AACA-AGAAAAATAGA--A-AA----ATAAT----------------GAATGAATGAGGGG--GAGACTA-CT-C-CTGATA-----ATT-TA--CCTTGTTACAA------------GGCTTG-GC--TC-AGCA-GA--AGC------CCCG----AGCACG---GTTG----TACC-CGGGTTTAAA--TAGT--GTT-C--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTNA-G-AAG-TAACC-AA-T-GAAATGNT--TTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TT-CAT-TATA-------ATAA-A---CA-AATGG--AATACGGAGA-----CGAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GTAG-ACT-AA-G--T---AATAAAT------------AATAGA---G-ATC----ATATATACACCTATACTA-CACACA
gi|1 : GCAACACTGTTGTAGTT--TAG-CATTTAAGCCACTACATTTGAAAGTATTTACTTCGCGTTGTGTTTTTGA-GAGTATTATACAAGTAAACTACC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGG--ATTAATATAATAATAG---------AGT-TT--AACCTTT-G-ATCAA-TA---A-ACAAAA---GTA-G-ACAAAA--TA--TCAAT---CAAACA-TAA-----C-CAG-------AATGAA---GTG-CT------AAGGT-AAGT-T------AA-A-AGAAAA-TAGA--G-AA----ATAAT----------------GAATGAATGAAGGG--GATACTAACT-CTCTGATA-----ACT-TATACCTTGTTACAA------------GGCT-G-G---TC-AGCAAGA--AGC------CGCG-----GCACA---GT-G----TACC--GGTTTTAAA--TAGT--GGT-C--TCA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TAAGATTT----GATAGT---AAATT-A-G-AAG-TAACC-AA-T-G-AAT-AT--TTGTAAT-AAAATACGTT-TG-----AAATAAA----GATAACTCTCTT-CGTT-----TTCCAT---TA-------ATAA-AC--CATAATGG--AAT------------CAAGA-AGTAA-TT-T-A-T--ATA-GATGAGTAATGTAG-ACTAAA-G--TTTAAATAAGT------------AA-AGA---GAATC----A-AAATACACCTATAAT--CACACA
gi|10 : gttcaaacg-AGAAAAATAGA--G-AA----ATAAT----------------GAATGAATGAAGGG--GAGACTA-CT-C-CTGATA-----ATT--A--CCTTGAAACAA------------GGCTTG-GC--TC-AGCA-G------------------------------TTG----TACC-CGGGTTTAAA--TAGT--GTT-C--attatttaagattttatctctctcttttcctat
gi|11 : TAAA---GGATAACTCTCTTCCGTT-----TT-CAT--ATA-------ATCA-A---CA-AATGG--AATACGGAGATACTCCGAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GT-----T-A---------AATAAAT------------GATAGA---G-A
gi|12 : -A---CA-AATGG--AATACGAAGA---------ATAGGAA-TTGT-A-CCAATAAGATG-GTAA-GTAA-TCTGAA-G--T---AATAAAT------------A-TAGA---G-ATC----CTATATACACCTATACTA-C-CAC
gi|13 : TA-GATGAGTAA-GTAG-ACT-AAAG--TTA-AATAATT------------AACAGA---G-ATT----ATAAACACACCTATACTA-C
gi|2 : GTAACA-TG--GTAGTTATTGGACATTTAAGCCACTACTATTGAAAGTAT--A-TTCGCGTT-TGTTT--GATGA----TACATAAGTAG-CTAAC---CTTG--TA--GTTG--CC-GCCTATAGTGAGGCTGGTAATTAA-ATGATAA-AT---------AGT-TTTAAACCTTTTG-ATCAAATA---A-ACAAAA--CGTAAG-ACAAAAAATA--TCAATTAACAAA-A-TAATA-ATC-CAGGG-----AATGAA--TGTGGCT------AAGGT-AACT-T------AACACAGAAAAATAGG--A-AA----A--AT----------------GAATGAATGAGGGG--GAGACTA-CT-C-CTGATA-----ATT--A--C-TTGTTTCAA------------GGCTTG-GC--TC-AGCA-GA--AGC------CCCG----AGCACA---GTTG----TACC-CGGGTTTAAA--TAGT--GTTTC--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTTA-G-AAG-TAACC-AA-T-GAAATGAT--TTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TT-CAC-TAT--------ATAA-A---CA-AATGG---ATACG----------AAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GTAG-ACT-AA-GTAT---AATGAAT------------AATAGA---G-ATC----ATATATACATC-ATACTA-CACACAca
gi|3 : ttcatagcAAGTAAAGTGTTTATCTTGGGTAAGTTTGAGTCTACCTTGATTGAGGCTGGTGATTAA-ATGATAG-ATATTGAATAAAGT-TTTGAGTCTTT-A-ATAAGTTG---A-GTAAAA--TGTAAG----AGAAATA--CCAAATGGCAAA-A-TAGTA-ATCTTGGGG-----AATAAA--TGGGGCTC-----AAG--------------------AGAAAAAT-CA--T-AATTTTGTTAT----------------GAA-AAAAGAGGGC--AAGACAA-CT-C-CTGATA-----TTTGTA--CCCTG
gi|3 : TTG----TACC-C-----------TGAT--GCT-C--TTA--GCATATTAAAG-TAT-CAA-AGAA--GGAGTTAGCTC-TAA-TATGACTT----GATTGT---AAATTCA-G-AAG-TAACC-AA-T-AAAAAGTT--TTGTAAT-GAAATGCATT-TG----AAAATCAA---AGATAACTCTCCTCCTAT-----TT-CAT-GA-A-------ATAA-A---CA-AATCG--AATATGAAGA-----CAGG---GGAA-TT-T-AGT--AT-------GTAC-ATAG-AC---A-A--T-----TTAAT------------AGTAGAACTG-AACTTAAATATGTACATAGATACTACCATACAatgctcttagcatattaaagtatcaaagaaggagttagctctaatatgacttgattgtaaattcagaagtaaccaataaaaagttttgtaatgaaatgcatttgaaaatcaaagataactctcctcctatttcatgaaataaacaaatcgaatatgaagacaggggaatttagtatgtacatagacaatttaatagtagaactgaacttaaatatgtacatagatactaccatacaaatataaagtgctgtaattccactttttttttttttttttttttgtat
gi|4 : aagtaaagtgtttatcttgggtaagtttgagtctaccttgattgaggctggtgattaaatgatagatattgaataaagttttgagtctttaataagttgagtaaaatgtaagagaaataccaaatggcaaaatagtaatcttggggaataaatggggctcaagagaaaaatcataattttgttatgaaaaaagagggcaagacaactcctgatatATAA-AT---------AGCATTTAAACCTGT-GGATCAAATAAATA-ACAAAAATCGTAAGAACAAAAAATAATTCAATAAGC-AA-A-TAATATATC-CAGGAACGATAATGAAATCGTGGCT------AAGGTCAAGTAT------AATA-CTAGAAATAGAAGA-AA----ATAAT----------------A---GAATGAGGGGGCGAGACTA-CTGC-CTGATA-----A-T-TA--CTTGGTTACGATATTTCCTAGGCGGCTGGTGCAATCAAGCA-GAGTAGCT-----CTCGAAGCAGCATAGGTGTTGCCTTTACCACGAGTTTAAAGTCAGTGCGTT-CTATTATCTCATAT---AGCAAC-GAAGGGTAATAAAGTGAACTCTTATGTATGATTTCCTGAATAGTTAAGAATTCATG-AAGTTCACCAAA-TGGAAATGCCAATTGTAATAAAAATACGTCGTGTAGCGAAATAAAAAGGGAGAAACCTCCTC--TT-----TT-aatataaagtgctgtaattccactttttttttttttttttttttgtat
gi|5 : aAATG---AGATAAAA---GTAAA-ACAAAACGTA----GAATAACAAA-AGTGATA-ATT-TCGGG-----AATGGA--TGTG-CTCTGTGAAAAAT-ATTT-TTAACTAAACA-AGAAAAGGAGA--AGAA----ATAATAATAAAAACTTACAGTGAATGAATGAGGGG---AGACTA-CT-C-CTGATA-----TTT-TA--CCTTGTTGCAA------------GGTCTG-------------------T------CCCG----AGCACG---GTTA----TGCT-CGGGTTTAAA--T-------------------A-AT---AG-AAT-AAA-G--A--AAAGTTAACTC-TGT-TATGA-TT----GATAGT---TAA---A-GAAAG-AAACC-AATT-AAAATGTT--TT-TAAT-AAAATACGTT-TG----AAAATAAA----TATAACTCTCTTCCGTTTATAATT-TATATATAAATATGCATAA-A---CA-AATAGAAAATACG----------AAGATAAGAATTT-T-A-C--ATT-GATGAGTAA--TAG--CC-A-----T---GATAAAT------------At
gi|6 : taatatttaactcgcttggagagttCAA------------GGCTTG-GT--TC-AGCA-GA--AGCAGAAGCCCCG----AGCACG---GTTG----TACT-CGGGTTTAAA--TAGT--GTT-C--TTA--AAA-AT---AG-AAT-GAA-AATA--AGAGTGAACTC-TAA-TA-GATTT----GATAGT---AAATTAA-G-AAG-TAACC-AA-T-GAAATGTT--TTGTAAT-AAAATGCATT-TG----AAAATAAA---GGATAACTCTCTTCCG-T-----TT-CA--TATA-------ATCA-A---CA-AATGG--AATACGGAGATACTCCGAGATAGGAA-TT-TAA-C--ATA-GATGAGTAA-GT-----T-AA--------AATAAAT------------GATAGA---G-ATC----ATATAT
gi|7 : CAA------------GGCTTG-GT--TC-AGCA-GA--AGCAGAAGCCCCG----AGCACG---GTTG----TACT-CGGGTTTAAA--TAGT--GTT-C--TTA--AAA-AT---AG-AATAGAA-AATA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTAA-G-AAG-TAACC-AA-T-GAAATGTT--TTGTAAT-AAAATGCATT-TG----AAAATAAA---GGATAACTCTCTTCCG-T-----TT-CAA-TATA-------ATCA-A---CA-AATGG--AATACGGAGATACTCCGAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GT-----T-A---------AATAAAT------------GATAGA---G-ATgtaggactccaaagtgcgatggta
gi|8 : ATGAT--TTA-----AAAATATGTT-TG----AAAATAAA---AGATAACTCTCCTCCGGT-----TT-CA--TAAA-------ATAACATTTCA-AATTG--AATACA----------AAGATAGGAA-TT-T-A-C--ATA-GACAAGTAA-ATTGAACTGAA-G--TTC-AATAAATATTAAATAATGAAATGGA---G-ATG----AT-T-TACACCAATCCTA-
gi|9 : AATGAATGATGGG--AAGACTA-CT-C-TTGATATTGATATT-TA--CCTTATTAAAA------------GGTTTG-GC--TT-AGTA-GA--AAT------CCCG----AGCACA---GTTG----TGCT-CGGGTTTAAA--TACT--GTT-C--TTA--agtacta
blockSeqs : . . AT A TA A . . T . A A TAT GGTAAG A T TA . . ATTGAATAA A TA TG A AAT G ATC AA A ATT TTAA . G T TTG ACGAT ATC G CTGTGAAAAATATTTTTAACTAAACA A AGA TTTT AATAAAAACTTACAGT T GCG . G . TTGATATTT . TATTTCCTAGGC TGCAA A . AGT AGAAGC AAGCA AGGT CCTT A GT GC T TA TCTC T TAA C A G G AT T G T CCTG TAA T T A T A T G A AA A G TAGC AAGG T TATAA . TATATAAATATGC C TTT . AA GAGATACTCCG T G A G CA A . TGAACTGAAGTTC ATTAAATAATGA ACT . TTAA T C A
blockSeqs : . T . TA . . TG . . . . TG GG T . . C A A T ATGG . . . CA . T G AAGGTCAAGTATAATA A AG . . T G . . . TTTGT . . GC . . A AGAAGC A A . . . . . . AC T . . . . G . . . T . . C . . . . . . T . . . . G T . . ATATA . . . . GAGATACTCCG . . . . . . . AGACTAAAGTTA . . . . T . A
blockSeqs : . . . TA A A . . T A A C TAAG . . . CA . T G AAGGTAACTTAACAC A G . . T G . . . TTTT . . GC . . A T A G . . . . . . GC . . . . . G . . . T . . C . . . . . . C . . . . G A . . TATA . . . . GAGATACTCCG . . . . . . . AGACTAAGTAT . . . . G . .
blockSeqs : A . . . . C . ATAA . . . TC . T . CAAG A A . . T A . . . ATT . . GT . . A . A G . . . . . . AA . . . . . A . . . T . . A . . . . . . T . . . . A T . . CTAT . . . . AAGACA . . . . . . . AATCTGAAGT . . . . A .
blockSeqs : G T . . . A . . . ATT . . GT . . A . A G . . . . . . AA . . . . . A . . . T . . A . . . . . . T . . . . G T . . TGAA . . . . AAGA . . . . . . . AGACAAT . . . . . .
blockSeqs : . . . . . ATT . . GC . . . . A A . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . G G . . TATA . . . . A . . . . . . . AGCCAT . . . .
blockSeqs : . . . . . . . . . . . . . . A . . . . A . . . TAAA . . . . A . . . . . . . TAA . . .
blockSeqs : . . . . . . . . . . . . . . A . . . . . . . TA . . .
blockSeqs : . . TA .
blockSeqCons : C** NTAG T** AAAANTTAACA****************** ATTT****** ** GC*** A**** G*** TAAA********* *** GAGAAA***** AGCTAAAGTT*******
originalCons : NNNNNNNNGCAACACTGTTGTAGTTATTGGACATTTAAGCCACTACNNTTGAAAGTATTTACTTCGCGTTGTGTTTTTGATGAGTATTACACAAGTAAACTANC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGGTGATTAA-ATGATAA-AT---------AGT-TTTAAACCTTT-G-ATCAAATA---A-ACAAAA--CGTAAG-ACAAAAAATA--TCAATTAGCAAA-A-TAATA-ATC-CGGGG-----AATGAA--TGTGGCTC-----AAGGT-AANT-T------AACA-AGAAAAATAGA--A-AA----ATAAT----------------GAATGAATGAGGGG--GAGACTA-CT-C-CTGATA-----ATT-TA--CCTTGTTACAA------------GGCTTG-GC--TC-AGCA-GA--AGC------CCCG----AGCACG---GTTG----TACC-CGGGTTTAAA--TAGT--GTT-C--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTNA-G-AAG-TAACC-AA-T-GAAATGNT--TTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TT-CAT-TATA-------ATAA-A---CA-AATGG--AATACGGAGA-----CGAGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GTAG-ACT-AA-G--T---AATAAAT------------AATAGA---G-ATC----ATATATACACCTATACTA-CACACA
finalCons : NNNNNNNNGCAACACTGTTGTAGTTATTGGACATTTAAGCCACTACNNTTGAAAGTATTTACTTCGCGTTGTGTTTTTGATGAGTATTACACAAGTAAACTANC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGGTGATTAA-ATGATAA-AT---------AGT-TTTAAACCTTT-G-ATCAAATA---A-ACAAAAC--GTAAG-ACAAAAAATA--TCAANTAGCAAA-A-TAATA-ATC-CGGGG-----AATGAAT--GTGGCTAAAANTTAACA------------------AGAAAAATAGA--A-AA----ATAAT----------------GAATGAATGAGGGG--GAGACTA-CT-C-CTGATAATTT------A--CCTTGTTACAA------------GGCTTGGC---TC-AGCA-GA--AGC------CCCGA----GCACG---GTTG----TACC-CGGGTTTAAA--TAGT--GTT-C--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTNA-G-AAG-TAACC-AA-T-GAAATGNT--TTGTAAT-AAAATACGTT-TG----AAAATAAAG---GATAACTCTCTTCCGTT-----TT-CATAAA---------ATAA-A---CA-AATGG--AATACGGAGAAA-----AGATAGGAA-TT-T-A-C--ATA-GATGAGTAA-GTAGCTAAAGTT-------AATAAAT------------AATAGA---G-ATC----ATATATACACCTATACTA-CACACA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TAAAATTTTCAAGTATAGAGCTATACATATGTAGGACTCCAAAGTGCGATG
Unaligned ( gi|15 ): ATATATGTAGGACTCCAAAGTGTGATGGTACT
Unaligned ( gi|16 ): ATGTTTGTAGGACTCCAAAGTGCGATGGTAC
Alignments
lowQualScore : 1 11 11 1 2222 1 11 1 2222 222 111111 1 11 1 1 444444444 1 111 111 222 111 11111 111 11111 777777777777777777777777 11111 1111 1111 6666666666666666 11111 11111 11111 222222222222 111 33333333333333 11111 1111 1 111 1111 111 1111 1111 11111 222222222222 111 555555555555 1111111 5555555555555555 111 222222222222 1
lowQualScore : 5 88 88 5 22 4444 5 88 5 4444 7 1 333 888888 7 3 11 3 0 000000000 0 44 444 6 444 8 444 0 88 5 444 7777 0 8 8 0 8 999 66666 000 55555 000000000000000000000000 44444 0 0 2222 2222 0000000000000000 0 888 777 5 5 5 22222 22222 1 11111 222222222222 1 4 333 4 33333333333333 00000 3333 9999 4 66 66 4 66 7777 1 000 5 5 5 1 77 5 5 1 0 2222 000 8 5 5 5 5 5 5 1 66 5 5 0000 2222 2 11111 4 333333333333 4 222 4 66 555555555555 4 8888888 4 66 4 4 2222222222222222 111 000000000000 4 4 1 6 1 0 7
lowQualScore : . .. .. . .. .... . .. . .... . . ... ...... . . .. . . ......... . .. ... . ... . ... . .. . ... .... . . . . . ... ..... ... ..... ........................ ..... . . .... .... ................ . ... ... . . . ..... ..... . ..... ............ . . ... . .............. ..... .... .... . .. .. . .. .... . ... . . . . .. . . . . .... ... . . . . . . . . .. . . .... .... . ..... . ............ . ... . .. ............ . ....... . .. . . ................ ... ............ . . . . . . .
lowQualScore : 0 55 55 5 00 5555 0 55 5 0000 3 0 333 777777 3 3 00 3 0 000000000 0 00 000 0 000 0 222 8 88 6 888 2222 8 0 0 8 0 000 77777 888 22222 222222222222222222222222 33333 1 1 6666 1111 7777777777777777 1 888 111 0 0 0 55555 22222 4 11111 888888888888 8 4 666 4 11111111111111 22222 2222 4444 4 11 11 4 11 9999 4 000 7 7 7 7 99 7 7 7 1 1111 000 6 7 7 7 7 7 7 0 99 0 0 6666 4444 0 11111 4 666666666666 4 222 4 11 999999999999 4 9999999 4 11 0 0 4444444444444444 000 555555555555 0 4 9 7 7 8 3
consensus : NNNNNNNNGCAACACTGTTGTAGTTATTGGACATTTAAGCCACTACNNTTGAAAGTATTTACTTCGCGTTGTGTTTTTGATGAGTATTACACAAGTAAACTANC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGGTGATTAA-ATGATAA-AT---------AGT-TTTAAACCTTT-G-ATCAAATA---A-ACAAAA--CGTAAG-ACAAAAAATA--TCAATTAGCAAA-A-TAATA-ATC-CGGGG-----AATGAA--TGTG----GCTAAGGT-AANT---------TAA-CA-AGAAA-----AATAGA--A-AA----ATAAT----------------GAATGAATGAGG---GG--GAGACTA-CT-C-CTGATA-----ATT-TA--CCTTGTTAC-----AA------------GGCTTG-GC--TC-AGCA-GA--AGC------CCCG----AGCACG---GTTG----TACC-CGGGTTTAAA--TAGT--GTT-C--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTNA-G-AAG-TAACC-AA-T-GAAATGNT--TTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TT-CATA---NA------ATAA-A---CA-AATGG--AATACGGAGA-A-----AGATAGGAA-TT-------T-AC--ATA-GATGAGTAA-GT--AG-CTAAAGT-T--AA---TAAAT------------A-ATAGAG-ATCATATATAC-ACCTATACTACACACA
Reference ( family-1011 ) : NNNNNNNNGCAACACTGTTGTAGTTATTGGACATTTAAGCCACTACNNTTGAAAGTATTTACTTCGCGTTGTGTTTTTGATGAGTATTACACAAGTAAACTANC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGGTGATTAA-ATGATAA-AT---------AGT-TTTAAACCTTT-G-ATCAAATA---A-ACAAAA--CGTAAG-ACAAAAAATA--TCAANTAGCAAA-A-TAATA-ATC-CGGGG-----AATGAA--TGTG----GCTAA----AANT---------TAA-CA-AGAAA-----AATAGA--A-AA----ATAAT----------------GAATGAATGAGG---GG--GAGACTA-CT-C-CTGATA-----ATT-TA--CCTTGTTAC-----AA------------GGCTTG-GC--TC-AGCA-GA--AGC------CCCG----AGCACG---GTTG----TACC-CGGGTTTAAA--TAGT--GTT-C--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTNA-G-AAG-TAACC-AA-T-GAAATGNT--TTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TT-CATA---AA------ATAA-A---CA-AATGG--AATACGGAGAAA-----AGATAGGAA-TT-------T-AC--ATA-GATGAGTAA-GT--AG-CTAAAGT-T--AA---TAAAT------------A-ATAGAG-ATCATATATAC-ACCTATACTACACACA
gi|1 : GCAACACTGTTGTAGTT--TAG-CATTTAAGCCACTACATTTGAAAGTATTTACTTCGCGTTGTGTTTTTGA-GAGTATTATACAAGTAAACTACC---CTTG--TA--TTTGAGTC-GCCTATAGTGAGGCTGG--ATTAATATAATAATAG---------AGT-TT--AACCTTT-G-ATCAA-TA---A-ACAAAA---GTA-G-ACAAAA--TA--TCAAT---CAAACA-TAA-----C-CAG-------AATGAA---GTG-----CTAAGGT-AAGT---------TAA--A-AGAAA-----A-TAGA--G-AA----ATAAT----------------GAATGAATGAAG---GG--GATACTAACT-CTCTGATA-----ACT-TATACCTTGTTAC-----AA------------GGCT-G-G---TC-AGCAAGA--AGC------CGCG-----GCACA---GT-G----TACC--GGTTTTAAA--TAGT--GGT-C--TCA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TAAGATTT----GATAGT---AAATT-A-G-AAG-TAACC-AA-T-G-AAT-AT--TTGTAAT-AAAATACGTT-TG-----AAATAAA----GATAACTCTCTT-CGTT-----TTCCAT----TA------ATAA-AC--CATAATGG--AAT-C------A-----AGA-AGTAA-TT-------T-AT--ATA-GATGAGTAATGT--AGACTAAAGT-TTAAA---TAAGT------------A-A-AGAGAATCA-AAATAC-ACCTATAAT-CACACA
gi|10 : gttcaaacg-AGAAA-----AATAGA--G-AA----ATAAT----------------GAATGAATGAAG---GG--GAGACTA-CT-C-CTGATA-----ATT--A--CCTTGAAAC-----AA------------GGCTTG-GC--TC-AGCA-G------------------------------TTG----TACC-CGGGTTTAAA--TAGT--GTT-C--attatttaagattttatctctctcttttcctat
gi|11 : TAAA---GGATAACTCTCTTCCGTT-----TT-CATA---TA------ATCA-A---CA-AATGG--AATACGGAGATACTCCGAGATAGGAA-TT-------T-AC--ATA-GATGAGTAA-GT------TA--------AA---TAAAT------------G-ATAGAG-A
gi|12 : -A---CA-AATGG--AATACGAAGAA---------TAGGAA-TTG------T-ACCAATAAGATG-GTAA-GT--AATCTGAAGT----AA---TAAAT------------A--TAGAG-ATCCTATATAC-ACCTATACTAC-CAC
gi|13 : TA-GATGAGTAA-GT--AGACTAAAGT-T--AAA--TAATT------------A-ACAGAG-ATTATAAACAC-ACCTATACTAC
gi|2 : GTAACA-TG--GTAGTTATTGGACATTTAAGCCACTACTATTGAAAGTAT--A-TTCGCGTT-TGTTT--GATGA----TACATAAGTAG-CTAAC---CTTG--TA--GTTG--CC-GCCTATAGTGAGGCTGGTAATTAA-ATGATAA-AT---------AGT-TTTAAACCTTTTG-ATCAAATA---A-ACAAAA--CGTAAG-ACAAAAAATA--TCAATTAACAAA-A-TAATA-ATC-CAGGG-----AATGAA--TGTG----GCTAAGGT-AACT---------TAA-CACAGAAA-----AATAGG--A-AA----A--AT----------------GAATGAATGAGG---GG--GAGACTA-CT-C-CTGATA-----ATT--A--C-TTGTTTC-----AA------------GGCTTG-GC--TC-AGCA-GA--AGC------CCCG----AGCACA---GTTG----TACC-CGGGTTTAAA--TAGT--GTTTC--TTA--ACA-AT---AG-AAC-GAA-GGTA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTTA-G-AAG-TAACC-AA-T-GAAATGAT--TTGTAAT-AAAATACGTT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TT-CACT---AT------ATAA-A---CA-AATGG---ATACG-----A-----AGATAGGAA-TT-------T-AC--ATA-GATGAGTAA-GT--AGACT-AAGTAT--AA---TGAAT------------A-ATAGAG-ATCATATATAC-ATC-ATACTACACACAca
gi|3 : ttcatagcAAGTAAAGTGTTTATCTTGGGTAAGTTTGAGTCTACCTTGATTGAGGCTGGTGATTAA-ATGATAG-ATATTGAATAAAGT-TTTGAGTCTTT-A-ATAAGTTG---A-GTAAAA--TGTAAG----AGAAATA--CCAAATGGCAAA-A-TAGTA-ATCTTGGGG-----AATAAA--TGGG----GCTCA----A-----------------G-AGAAA-----AAT-CA--T-AATTTTGTTAT----------------GAA-AAAAGAGG---GC--AAGACAA-CT-C-CTGATA-----TTTGTA--CCCTG
gi|3 : -----AATAAG--T-TG----AGTAA----AATG---------TAA--G-AGAAATACCAAATGGC--A-AA----ATAGTAATCTTGGG-------GAATAAATGGGGCTCAA--GAGAAAA-AT-C----ATA-----ATT-T------TGTTATGAAAAAA------------GA---G-G-------GCAAGAC-AAC------TCCT----GATAT-----TTG----TACC-C-----------TGAT--GCT-C--TTA--GCATATTAAAG-TAT-CAA-AGAA--GGAGTTAGCTC-TAA-TATGACTT----GATTGT---AAATTCA-G-AAG-TAACC-AA-T-AAAAAGTT--TTGTAAT-GAAATGCATT-TG----AAAATCAA---AGATAACTCTCCTCCTAT-----TT-CATG---AA------ATAA-A---CA-AATCG--AATATGAAGACA-----GG---GGAA-TTTAGTATGT-AC--ATA-GACAATTTA-AT--AG--TAGAAC-T--GAACTTAAAT------------ATGTA------CATAGATACTACC-ATACatgctcttagcatattaaagtatcaaagaaggagttagctctaatatgacttgattgtaaattcagaagtaaccaataaaaagttttgtaatgaaatgcatttgaaaatcaaagataactctcctcctatttcatgaaataaacaaatcgaatatgaagacaggggaatttagtatgtacatagacaatttaatagtagaactgaacttaaatatgtacatagatactaccatacaaatataaagtgctgtaattccactttttttttttttttttttttgtat
gi|4 : aagtaaagtgtttatcttgggtaagtttgagtctaccttgattgaggctggtgattaaatgatagatattgaataaagttttgagtctttATAA-AT---------AGCATTTAAACCTGT-GGATCAAATAAATA-ACAAAAATCGTAAGAACAAAAAATAATTCAATAAGC-AA-A-TAATATATC-CAGGAACGATAATGAAATCGTG----GCTAAGGTCAAGTA--------TAA-TA-CTAGA-----AATAGAAGA-AA----ATAAT----------------A---GAATGAGG---GGGCGAGACTA-CTGC-CTGATA-----A-T-TA--CTTGGTTAC-----GATATTTCCTAGGCGGCTGGTGCAATCAAGCA-GAGTAGCT-----CTCGAAGCAGCATAGGTGTTGCCTTTACCACGAGTTTAAAGTCAGTGCGTT-CTATTATCTCATAT---AGCAAC-GAAGGGTAATAAAGTGAACTCTTATGTATGATTTCCTGAATAGTTAAGAATTCATG-AAGTTCACCAAA-TGGAAATGCCAATTGTAATAAAAATACGTCGTGTAGCGAAATAAAAAGGGAGAAACCTCCTC--TT-----TT-aaatataaagtgctgtaattccactttttttttttttttttttttgtat
gi|5 : aAATG---AGATAAAA---GTAAA-ACAAAACGTA----GAATAACAAA-AGTGATA-ATT-TCGGG-----AATGGA--TGTGCTCTGTGAA----AAATATTTTTAACTAAACA-AGAAA-----AGGAGA--AGAA----ATAATAATAAAAACTTACAGTGAATGAATGAGG---GG---AGACTA-CT-C-CTGATA-----TTT-TA--CCTTGTTGC-----AA------------GGTCTG-------------------T------CCCG----AGCACG---GTTA----TGCT-CGGGTTTAAA--T-------------------A-AT---AG-AAT-AAA-G--A--AAAGTTAACTC-TGT-TATGA-TT----GATAGT---TAA---A-GAAAG-AAACC-AATT-AAAATGTT--TT-TAAT-AAAATACGTT-TG----AAAATAAA----TATAACTCTCTTCCGTTTATAATT-TATATATAAATATGCATAA-A---CA-AATAGAAAATACG-----A-----AGATAAGAATTT-------T-AC--ATT-GATGAGTAA--T--AG-CCA-----T--GA---TAAAT------------A-t
gi|6 : taatatttaactcgcttggagagttC-----AA------------GGCTTG-GT--TC-AGCA-GA--AGCAGAAGCCCCG----AGCACG---GTTG----TACT-CGGGTTTAAA--TAGT--GTT-C--TTA--AAA-AT---AG-AAT-GAA-AATA--AGAGTGAACTC-TAA-TA-GATTT----GATAGT---AAATTAA-G-AAG-TAACC-AA-T-GAAATGTT--TTGTAAT-AAAATGCATT-TG----AAAATAAA---GGATAACTCTCTTCCG-T-----TT-CATA---TA------ATCA-A---CA-AATGG--AATACGGAGATACTCCGAGATAGGAA-TT-------TAAC--ATA-GATGAGTAA-GT------TAA-------AA---TAAAT------------G-ATAGAG-ATCATATAT
gi|7 : C-----AA------------GGCTTG-GT--TC-AGCA-GA--AGCAGAAGCCCCG----AGCACG---GTTG----TACT-CGGGTTTAAA--TAGT--GTT-C--TTA--AAA-AT---AG-AATAGAA-AATA--AGAGTGAACTC-TAT-TATGATTT----GATAGT---AAATTAA-G-AAG-TAACC-AA-T-GAAATGTT--TTGTAAT-AAAATGCATT-TG----AAAATAAA---GGATAACTCTCTTCCGTT-----TC-AATA---TA------ATCA-A---CA-AATGG--AATACGGAGATACTCCGAGATAGGAA-TT-------T-AC--ATA-GATGAGTAA-GT------TA--------AA---TAAAT------------G-ATAGAG-ATgtaggactccaaagtgcgatggta
gi|8 : ATGAT--TTA-----AAAATATGTT-TG----AAAATAAA---AGATAACTCTCCTCCGGT-----TT-CATA---AA------ATAACATTTCA-AATTG--AATAC-----AA-----AGATAGGAA-TT-------T-AC--ATA-GACAAGTAA-ATTGAA-CTGAAGT-TC-AA---TAAATATTAAATAATGAA-ATGGAG-ATGAT-T-TAC-ACCAATCCTA
gi|9 : AATGAATGATG---GG--AAGACTA-CT-C-TTGATATTGATATT-TA--CCTTATTAA-----AA------------GGTTTG-GC--TT-AGTA-GA--AAT------CCCG----AGCACA---GTTG----TGCT-CGGGTTTAAA--TACT--GTT-C--TTA--agtacta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TAAAATTTTCAAGTATAGAGCTATACATATGTAGGACTCCAAAGTGCGATG
Unaligned ( gi|15 ): ATATATGTAGGACTCCAAAGTGTGATGGTACT
Unaligned ( gi|16 ): ATGTTTGTAGGACTCCAAAGTGCGATGGTAC