lowQualScore : 777 1 333333 11 11 1 1 11 3333333 2222222 11 11 22222222 1111 22222 222 5555555555555 11111 3333 555555555555555 1111 11 111 111 666666666666666 11 22 2222222222222222 1111 1111 88888888888888888888888888888 1 11 11111111111111111111111 11 1111 1 1 222 111 8888888888888888888
lowQualScore : 000 5 333333 33 3 66 0 0 4 6 8 11 8 6666666 6 1111111 6 55 6 6 3 2 6 77 6 22222222 5 77 1111 3 5 5 666 22222 5 4 888 5 8888888888888 22222 888 8888 888 88 6 333333333333333 7777 0000 5 00 4 777 5 5 4 66 6 66 555 4 8 4 1 222 4 4 66 222222222222222 0 4 00 55 4 777 666 7 99999 7777777777777777 4444 5 3 3 3 44 1111 44 22222222222222222222222222222 3 6 6 6 7 9 3 3 77 3 3 11 3 99999999999999999999999 444 5 22 44 3 2 44 6 8888 3 2 6 6 444 555 33 888 2 1 77777 33 222 2 33 555 2222222222222222222 555 2 2 2
lowQualScore : ... . ...... .. . .. . . . . . .. . ....... . ....... . .. . . . . . .. . ........ . .. .... . . . ... ..... . . ... . ............. ..... ... .... ... .. . ............... .... .... . .. . ... . . . .. . .. ... . . . . ... . . .. ............... . . .. .. . ... ... . ..... ................ .... . . . . .. .... .. ............................. . . . . . . . . .. . . .. . ....................... ... . .. .. . . .. . .... . . . . ... ... .. ... . . ..... .. ... . .. ... ................... ... . . .
lowQualScore : 000 0 555555 22 2 00 0 0 2 0 0 00 0 6666666 7 7777777 7 88 7 7 5 5 0 11 0 77777777 7 99 9999 7 7 7 333 11111 7 3 111 7 3333333333333 55555 888 2222 888 11 0 999999999999999 4444 6666 0 66 4 888 0 0 4 44 3 11 666 4 9 4 7 222 4 4 11 888888888888888 1 4 66 88 0 000 444 3 11111 7777777777777777 4444 3 6 6 3 66 2222 55 00000000000000000000000000000 1 9 7 2 4 0 1 1 33 1 1 22 1 22222222222222222222222 111 7 77 55 1 7 22 7 1111 2 9 2 8 777 000 99 444 9 9 99999 99 999 9 99 000 9999999999999999999 000 9 9 9
consensus : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACTATCCAC-CG--A-CTTTAA-GTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAG---GC-A-TAC-ACT--CA-AA-ATTT-ATG-G-CGTTTCCAAA-TTT-CTGT-ACGAA-TA-TATN---AA-CTGAAA-----ACGAG---TT-ATAA---AAGCT-GTTCATCTCAT-TTTTA-A---AAT--AATT----T-TT--GTA-C---ACG-A-GGGA-CTGATC-TCGCTG--TGTA---TTTT-AA-T-GCCGTAAT---T-GT-CGT--TGCTTT--TATTGT-TTTTGTTTTCA-A--AAAAGATTTTT-AAATTG-TTTTGT---ATTGAC--ATG-TTCTT---G-CG----------------TTGTAAACTCAA--AATTAGAGGT-AGAA-AAAA-G--T---ATGT-AGTACGAAAATTGGT----T-----AC-GTAATGTAT-GGAAAGAC-GGTATTTAC-C-GG--A-A-TT-A-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAA-AAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTACAAACAT-AAGACAATACACTAAAA---AAA--GA--TCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGC---G---TT--AT----T-----A---AG-GGGCG-CT-ACGCCAC
Reference ( gi|4 ) : AAACTTTTGATCAAGTTTTA-C-TATTG-TGACTTTG-TT-CA-AATTTGAACCATCCGC-CG--A-CTTTAA-ATAAGGTATAGACA-------G-AA--T-AC-AATTACGGACAGAG-AGACAG---GT-A-TAC-ACT--CA-AA-ATCT-ATG-G-CATTTCGAGA-TTT-CGGT-TTGAA-TA-AATT---AC-CGGAAA-----ACGAG---TT-C--A---AAGCT-GTTTATCTTATATTTTA-A---AAT--AATT----T-TT--GTA-C---ACG-A-GGGA-CTGATT-TCACTG--TGTA---TTTT-AA-T-GCCGTGAT---T-GT-CGT--TGCTTT--TATTGTTTTTTGTTTTCA-A--AAAAGATTTTTTAAATTG-TTTTGT---ATTGAC--ATG-TTCTT---G-CG----------------TTGTAAACTCAA--AACCAGAGGT-AGAA-AAAA-G--T---GTGT-AGTTCTAAAATTGGT----TA----AC-GCAATGTAT-GTAAAGGC-GGTGTTTTC-C-GG--A-A-TC-A-TGGC---------A-ATAG--------CAAGGTTT-ATGATG-AAAATTGGGTACTTAG-AAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TATATGTACAAACAT-ATGACACTATACTTGGA---AAA--GA--CCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGC---G---TTGAAT----T-----A---AG-GGGCG-CT-ACGCCACT
gi|2 : AAACT---GATGAAGTTT-A-C-CATTG-TGACTTTA-TT-CA-AATTTGAACAATCCAT-CGCGA-CTTTAA-GTAAACTACAGACAAGTCACTG-AACCT-AC-AATTACGGACAAAC-AAGCAG----C-A-TAC-ACT--CA-AA-ATTT-ATG-GGCGTTTCAA-A-TTT-CTGT-ACGAA-TATAATA---AAACTGAAA-----ACGAG---TT-C--ATAAAAGCTTGTTCCTC----ATTTTA-ATACAATTAAATT----T-TTT-GTA-C---ACG-A-GGGA-CTGCTC-TCGCTG--TGTA---TTTTTAA-T-GCCGTAACC--T-GTTCGT--TGCTTT--TATTGT-------TTTCA-A--AAAAGATTTTTAAATTTG-TTTTGT---ATTGAC--ATG-TTCTTTTAG-CG----------------TTGTAAACTC-A--AATTAGAGGA-AGAA-AAAA-G--T---ATGT-AGAACGAAAATT--------------------TGTAT-GGAAAGAC-GGTATTTAC-C-GGA-A-A-GA-A-TGGC---------A-AT-G--------CAAGGTTTAACGA-G-AAAATTAG
gi|1 : caataaacgttctttccaaaaataaaattatgcaaaccacggccctcaaagcgttccgaaaccgaacgtacgtgcatatgcctcaatacggtaaatactacatttgtagtaatcttacatgttcttcatttattttctctcgatggagcccgttaaaggaggacgtAAACT---GATGAAGTTTAG-C-CATTG-TGATTTTA-TTTCA-AATTTGAACTATCCAC-CG--A-CTTTAA-GTAAAATACAGACA-------GGAA--TGAC-AATTACAGACAAAC-AGGCAGTATAT-AATAC-ACTTGCAGAA-ATTC-ATG-G-CGTTTCCAGAATTT-CTGT-ACAAA-TA-TATT---AAACTCAAA-----ATGAG---TT-ATAA---AAGCG-GTTCATCTCAT-TTTTA-A---TAC--AATTATTTT-TT--GTA-C---ACG-A-GGGA-CTGATC-TCGCTG--TGTT---TTTT-AA-T-GCCGTAAT---T-GT-CGTAATGCTTT--TA--------TGTTTTCACA--AAAAGA--TTTTAAATTGTTTTTGT---A-TGA---ATGTTTCTT---G-CGTAACCATGTTAACGTCTTGTAAACTC-A--AATTAGAGGT-AGAA-AAAA-GTTT---ATGT-AGAACGAAAATT--------------------TGTAT-GGAAAGACGGGTGTTTAC-CGGG--A-A-TT-A-TGGC---------AGATAG--------CAAGGTTT-GCGAGGAAAAATTAAGTACTTAt
gi|5 : accttcataaaacgttctcaaataaattatgccaaaccacgccctcaaaggttccgaaaaaccgaaccggtaccgtgcagtatggcactaatttaaggtaatatttacattgtaggtaatctgtacatgtacaaatgtaatcttcatttatttctctcgatgggaacccgtaaagcgaggacgtAAACT---GATGAAGTTTAAAC-CATTG--GACTTTA-TT-CA-AATTTGAACTATCCACGCG--A-CTTTAA---GAATTACAGACA-------G-AA--T-AC-AA-TA-GGACAAAC-AGGCAG---GCAA-TAC-ACA--TA-AACATTTAATG-G-CGTTTCTAAT-TTC-CTGTACGGAA-TA-TATTTAAAA-CTGAAA-----ACGAGTTATT-A--A---AAGCT-GTTCATCC--------------AAT----TT----T-TT--GTA-CACAACG-A-GGGA-CTGATC-TCGCTG--TGTATTTTTTT-AA-TGGTCGTAAT---T-GT-CG---TGCTTT--TA-------TTGTTTTCA-A--AAAAGAATTTTAAAATTG-TTTTGT---ATTGAC--ATGTTTCTT---GCCGT---------------TTGTAAACTC-A--AATCAGAGGTAAGAA-AAAA-G--T---ATGT-AGAACAAAAATT--T----T------------TGTAT-GGAAAGAC-GCTATTTAC-C-GG--A-A-TT-A-TGGC---------A-ATAG--------CAAGGGTT-ACGATG-AAAA
gi|3 : cctcataaaacacgttctcaaataaattatgcaaaccacgccctcaaagcgttcccgaaccgagccgtaccggtgcagtatgcctaataaggtaatactacatttgtagtaatttacatgtatcttatttattttctctgaatgggccgttaaggagcacgtGATGAAGTTTAA-CGCATTGGTG-CTTTAATT-CACAATTTGAACCATCCAC-CG--AGCTTTAACACAA--TA-AGACA-------G-AAA-T-ACCAATTAGCGACAAACCAGGCTG---GC-A--ACTACT--CA-A---TTT-ATGCG-CGGTTCCAAA-TTTTCTGT-ACGAAGTA-TATA---AA-CTGAAA-----ACGAG---TTACTAA---AAGC--GTTCATCTCAT-TTATACA---AAT--TATT----T-TTTTGTAGC---ACG-A-GGGA-CTGATT--CGCTG--TGTA---TTTT-AAAT-GCCGTAAT---TCGT-CGT--TGCTTT---AT--------GTTTTTA-ACAAAAAGATTTT--AAAT-G-TTTTGT---ATTGACTTATG-TTCTT-----CG----------------TTGTAAACTCAT--AATTAGAGTA-AGAA-AAAAAG--T---ATGTTAGAAC-AAAATT--------------------TGTATAGGAAAGAC-G-TATTTAC-C-GG--A-AATCTA-TGGC---------A-A-AG--------CAAGGTTT-ACGATG-AAAAaatt
gi|17 : cacctcattaaataacgttctcaaataaattattactgcaaaccaacccctcaaagcggcttccgacgcaaaccgtaccgctgcagattgcctaactaaggtaataatctacatttgtagtaattcttacatgttctcattatttctctcgcatgggagcccattaaagaggtacgctaaacC-CA--A-CTTTAA-A----ATATGGACA-------G-AA--T-AC-GAATACGAACAAAC-AGGCAG---GC-A-TAC-ACT--CACAA-ATTT-ATG-G-TGGTTCTA-A-TTT-CGGT-ACAAA-TA-TAT-----------AA-----AC-------T-A--A---AAACT-GTTCATCTCAT-TTT-------AAT--AATT----T-TT--GTA-C---agtt
gi|7 : TAAAATATAAACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAG---GC-A-TGC-ACT--CA-AA-ATTT-ATG-G-CGTTTCCAAA-TGT-CGGT-ACGAA-TA-TATA---AA-CTGAAA-----ACGAG---TT-ATAA---AAGCG-GTTCATCTCAT--TTTA-A-----T--AATT----T-TT--GTA-C---ACG-A-GGGA-------------------------------T-GCCATAAT---T-GT-CGT--TGCT-----ATTG----------------------ATTT---AAATTG-TTTTGT---ATTGAC--ATG-TTCTT---G-CG----------------TTGTAAATTTAA--ATTTAGAGGT-AAAA-AAAA-G--T---ATG--AGTACGAAAATTGGT----CA----AC-GTAATGTAT-GGGAAGAC-GGTATTTAC-C-GG--A-A-TT-A-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGAGCACTTAA-AAATGCAG-ATTACTCTA--TGGAGTCCAAGAGGCAATTCGA-TATG--T-TATGTACAAACAT-AAGACAACGTACTAAAT---AAA--GA--TCTA-TGCTTTGC-AAAATTCTGT--G---TA-TTCATT--TGC---GTTATTGAG-----T-----A---AG-GGGCG-CT-ACGCCAC
gi|6 : AG-GGGCAG---GC---TAT-ATT--CA-AATAGCT-ATG-G-TGTTTCAA-A-TTT-CGGA-CGAAA-TA-TATTTAAAC-TTGAAATTAAAACGAG---TTAT--A---AAGCT-GTTCATCTCA-ATTT-------AAT--AAGT----TGTT--GTG-C---ACA-ACGGGAGCTGACTCTCATTGAATGTAATATTTT-AAAT-GCCGTGAT---T-GT-CGT--TGCTTTGATATTATTTTGAGAT---A-AT-AAAAGATTATATA-----------------TGAC--ATG-TTCTT---G-CG----------------TTGTAAACTCAA--AATTAGAGGT-AGAACAAAA-G--T---ATGT-AGTACAAAAATTGGTGAAATACGTTACGGTAATGTAT-GGAAAGACTAGTATTTAC-C-GG--A-A-T----TGGC---------A-ATAG--------CAAG------TAATGCAAGATT--------------------ATTA-TCTA--TGGAGT-CAAGA-GCAAATCGA-T-TGA-TTTACGTACAAAAAT-AAGACAATATACTAAAA---AAA--GA--TCTATTGCTTTGC-AAATTCCTGT--G---TA-TTCATT--TGC---G---TT--ATTGCGT-----A---AA-GGGCGCCT-ACGCC
gi|8 : cAA-----ACGAG---T--A--A---AAGCT-GTTCATCTCAT--TTTA-A-----T--A-TT----T-TA--GTT-C---AAGGA-GGAA-CTGATC-TCGCTG--TGTA---TATC-AA-T-GCCGTGAT---T-GT-CGT--AGCTTT--C---GTTTTTTAGTTTCA-A--AAAATATTTT--GAATTG-ATTTGTGGTATTGCG--ATG-TTTT--------------------------------------AACCAGATAT-AGAA-AAAC-T--TTACGTAT-AGT---------------------------AATGTAT-GGAAAGAC-GGTATTTTC-C-G---A-A-TT-A-TAGC---------A-ATAG--------CAAGGTT--ACAATA-AAAACGGGGTACTTA--AAATGCAG-ATTGTTCTA--CGGACCCCAAGA-GCAATTCAT-CGTG--TTTGCGCATAAACAT-AAGACAATGTAC-TGAA---AAA--GA--CCAA-TACTTCGC--AAATTCTGT--G---TA-TTCATT--TGC---G---GTTATTTGCGT-----A---AG-GGGCG-CT-ACGCCACca
gi|10 : gt--GTA-A---ACG-A-GGGA-CTGATT-TCCTTT--TGTT---TTTG-AA-T-ATCAACACCAAT-AT-TGT--TTTTTC--TATTATGTTTTGTTTTCA-A--GAAAGATTTTT--AATTG-CTTTG------------AT-------------------------------------CTCAATAAATCAGATGT-AGAA-AAAA-G--C---ATGT-ATTACGGAAATTGGT----TA----AC-GTAAAGTAT-GGAAAGAC-GGCATTTTC-C-GG--ACA-TT-AATAGCTACATTTTGA-ACAGTCTTATTGCAAGGTTT-ACGATG-AAAATTAGATATTTAA-AAATGCAG-ATTATTTTA--TGGTGCCCAAGAGGCAATTCGA-TGTGCATATACGTACAAACAT-AAAACAATATACTAGAA---AAA--GA--CTTA-TGCTTTGC-AAAATTCTGT--G---TA-TTCATT--TGC---G-------------T-----A---AG-GGGCG-CT-ACGCCA
gi|25 : GGA-CTGATC-TCGC-G--TGTA---TTCT-AA-T-GCCGTGAT---G-GT-CTT--TGCTT
gi|24 : A-A--AAAAGATTTT--AAATTG-TTTTAT---ATTGAC--ATG-TTCTT---G-CG----------------TTGTAAACT
gi|11 : TTG-TTTTGT---ATTGAA--ATG-GTCTT---G-CG----------------TTGTAAACTGAA--ATTTAGAGAT-AGAA-AAAA-G--T---ATG--AGTACGAAAATTGGT----TA----AC-GTAATG----GGAAAGAC-GGTATTTAC-C-GG--A-A-TT-A-TGGC---------A-ATAG--------CAAGGTAT-ACGATG-AAAATGGAGTACTTAA-AAATGCAG-ATTACTCTA--TGGAGTCCAAGAGGCAATTCGA-TATG--T-TATGTACAAACAT-AAGACA--ATG-------------------CTA-TGCTTTGC-AAAATTATGT--G---TA-TTCATT--TGC---G---TT--AT----TGAGC-A---AG-GGGCG-CT-ACGCCACt
gi|16 : TTGAC--ATG-ATTTT---G-CA----------------TTATAAAC---------CAGATGT-AGAA-AA---------------AGT---------------------------AATGGAT-G-AAAGAC-GGCATTTTC-C-GG--A----T-A-TGTC-----------------------------TT-CCGATG-AAATTTGGGTACTTA--AAATGCTG-AATATTCTA--TGGACCCCAAGAGGCAATTCGA-
gi|12 : AGAGGT-AGAA-AAAT-G--T---ATGT-AGTACAAAAATTGGT----TT----AT-GTAATGTAT-GGAAAGAC-GGT-TTTTC-C-GGAAA-A-TT-A--------------A-ATAG--------TAAGGTTT-ACGATG-AAAACTGAGTACTTGA-AAATGCAG-ATTA-TCTAATTGGAGTCCAAGAGGCAATTCGG-TGTA--TTTACGTACTAACATAAAGACAATGCACTTAAA---AAA--GA--TCTA-TGTTTAGCAAAAATTCTGT--G---TA-TTCATT--TGC---G---TT--AT----TGCCGCA---AG-GGGTG-CT-ACGCCAC
gi|22 : AA-G--T---ATGT-AGTACGAAAATTGG--------------------------AAAGAC-GGCATTTAC-C-GG--A-A-TT-A--GGC------------------------------T-AT-ATG-GCAAT---------AGCAAGTGCAG-ATTATTCTA--AGGAGTCCAAAATGCAA
gi|13 : AT-GGAAAGTC-GGTATTAACGC-GA--A-A-TT-A-TGGC---------A-A--------------AGTTT-ACGAGG-A---TCCGGAGTTTAA-A---------------TA--TG-AGTCCAAGAGGCAATTC---------------TACAAAC-T-AAGAAAATACACT---A---AAA--GA--TGTA-TGCTTTGC-AAA-TTCTGT--G---TA-TTCATT--TGCAATA---TTGCG-----T-----A---AG-GGGCG-CT-ACG
gi|15 : AAAGTTT-TCGATG-AATATTGGGTACTT-G-AAATACAA-ATCATTCTA--CGGAACCCAAGCGGCAATTCGA-TGTG--TTTACGTACAAACAT-AAGACAATATATTACAA---AAA--GA--CCTA-TGCTTTGG-AACATT-TGT--G-------TTA-T--TGC---G-------------T-----A---AG-GTGCG-CT-ACGTCACg
gi|18 : ATGCAGGATTATTCTA--TG-AGTT-AAGAGGCAATTCGA-TGTG--TTTACATACAAACAT-AAGACAATACACTAAAA---AAAATGA--TCTA-T------------TTCTGT--ATT-TATTTCATT--TGC---G---C--AAT----T-----G---CGAAGGCG-CT-ACGCCAC
gi|20 : CAG-CTTATTCTA--TGGAGTTCAAGAGGC-ATTCGAGTGTT--TACATA-ACAAACAT-AAGACAATACACTAAAAAACAAA--GA--TCT--------------ATTCTGT--T---TA-TTCATT--TGC---G---CT--ATTGCGT-----A---AG-GGGCG-CTAACGCC
gi|19 : -ATTATT-TA--TGAGATTCAAGAGGCAATTCGACTGTG--TTTAC-TACAAACAT-AAAACAATACACTAAAA---AAA--AA-----A-T-CTT------AATTCTGT--ATT-TA-TTTATTACTGC---G---CT--ATTGCGT-----A---AG-GGGCC-GT-ACGCCA
gi|14 : TACGTATAAACGT-AAGACAATATA-TTAGA---AAA--AATACCTA-TGCTTCGC-AACATTATGT--G---TA-TTCATT--TGC---G---TT--ATTGCGT-----A---AG-GGGTG-CT-
gi|21 : acaatgcagcacaatgcgaggcaatttccttcaaacgctcttgattgaaccaaatTACGTACAAACAT-ACGACAATATACTAAAA---AAA--GA--TTCA-AGCTTCGC-ACATTTGCGTTGG---CA---CATT--TGC---G---TTG--T----TGCGC-A---AG-GGGTG-CT-ACGCCttaaacccgattaa
gi|23 : tatAAACAT-AAGACAATACACTAAAA---AAA--GA--TCT--------------ATTCTGT--ATTTTA-TTCA-T--TGC---G---CT--AT----T-----GCGTAA-GGGCA-CT-ACGCCAC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TCAGACCTAAAACCAGTGCTACTACACCTCAGAAACGGAACGAACCAGTATACCGAGCAGAAACGAACCGTAACACATACAAGAGAGAACCGTACAGGCAAGAAAGGCAGAGAACCTACCGTAGAAAGAAAGACGAACACGTACCGTGCAAAAGAAGAACGATAACCCCGAAACCTCATAAAACATACATAAATATATGCAACACCAGCCCTCAAAGCGTCCGAACCGAACACGTACCGTGCAGTTAGCTAATAAGTAAGAACAACATTATAGTGATATCTATCATAATATTTTCACTGATTTATTTACTCTCGAATGGAGCCCGTAAAGGAGGACGTAATACTGATGAAGATAACACCATATGTGAGAGGATTTAATTCA
Unaligned ( gi|26 ): AAGAAGCATTCCGAACAATGTGTATAAGGAAGA
Alignments
lowQualScore : 1111 11 11 1111111 11 111111 1 1 1 22222 11111 11111 333333 11 111 111 3333333333 2222222222222222 5555555555555555555555 111111111 11111111 111 44444444444
lowQualScore : 4444 11 8 88 0 8 8 8 2 6 99 6 22 0 4 8888888 5 33 5 5 0 5 222222 5 66 0 0 5 5 5 3 5 0 5 3 5 0 5 11111 5 5 11111 44444 66 4 777777 4 22 9999 4 4 777 4 4 4 4 0 55 111 111 4 4 8888 4 4 4 55 66 6666666666 1 99 3 99 7 3 666 3 555 3 3 555 3 2222222222222222 3 77777 2 3 3 3 44 55 0 1 9999999999999999999999 2 5 1 2 2 2 2 77 2 111111111 2 0 00000000 2 5 0 8 2 1 33 3 77 2 2 55 444 33 0 2 1 88888 33 222 2 33 2 3 33 99999999999 444 2 2 2
lowQualScore : .... .. . .. . . . . . . .. . .. . . ....... . .. . . . . ...... . .. . . . . . . . . . . . . . ..... . . ..... ..... .. . ...... . .. .... . . ... . . . . . .. ... ... . . .... . . . .. .. .......... . .. . .. . . ... . ... . . ... . ................ . ..... . . . . .. .. . . ...................... . . . . . . . .. . ......... . . ........ . . . . . . .. . .. . . .. ... .. . . . ..... .. ... . .. . . .. ........... ... . . .
lowQualScore : 8888 88 0 88 8 0 0 0 2 7 22 7 99 3 0 6666666 7 66 7 7 7 7 888888 0 99 0 0 0 0 0 4 0 4 0 0 0 0 0 66666 0 0 11111 11111 22 4 333333 4 22 4444 4 0 888 4 4 0 0 7 55 000 000 0 0 5555 0 0 0 55 11 7777777777 9 55 4 66 3 6 444 3 000 3 3 888 3 1111111111111111 3 55555 4 3 3 3 22 33 8 4 0000000000000000000000 9 7 9 9 9 9 9 99 9 444444444 9 8 44444444 7 3 7 5 9 9 99 1 99 9 7 33 777 77 9 7 1 00000 77 000 7 77 7 3 77 77777777777 777 7 7 7
consensus : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACCATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TAC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATTT-CNGTACG-AA-TAT-AT-N---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-TGTTCATCTCAT-TTT--TA--AA-TAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTT---AA-TG-CCG----TAA-TT-G-TCGT--TGCTTT--TATTGT-TTTT-GTTTTCA--AAAAAGATTTTT-AAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AA-AAAAG--TATG-TAGTACGAAAATTGGT----T-A-C------GTAATGTAT-GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAAAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATACACTA-AAA---AAA--GATCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGC-GTT--ATTG-G-T-----A---AG-GGGCG-CT-ACGCCAC
Reference ( family-101 ) : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACTATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TAC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATTT-CTGTACG-AA-TAT-AT-N---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-TGTTCATCTCAT-TTT--TA-AAA-TAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTT---AA-TG-CCG----TAA-TT-G-TCGT--TGCTTT--TATTGT-TTTT-GTTTTCA--AAAAAGATTTTT-AAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AA-AAAAG--TATG-TAGTACGAAAATTGGT----T-A-C------GTAATGTAT-GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAAAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATACACTA-AAA---AAA--GATCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGC-GTT--AT-----T-----A---AG-GGGCG-CT-ACGCCAC
gi|1 : AAACT---GATGAAGTTTAG-C-CATTG-TGATTTTA-TTTCA-AATTTGAACTATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------GGAA--TGAC-AATTACAGACAAAC-AGGCAGTATATAA-TAC-ACTTGCAGAA-ATTCA-T-G-GCGTTTCCAGAATTT-CTGTACA-AA-TAT-AT-T---AAACT-CAAA-----ATGAGTT-A-T-AAAAGC-GGTTCATCTCAT-TTT--TA-ATA-CAA--TTATTTT-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTT---TTTT---AA-TG-CCG----TAA-TT-G-TCGTAATGCTTT--TA--------T-GTTTTCAC-AAAAAGA-TTTT-AAA-TTGTTTTTGT---A--TGA---ATGTTT-CTT---GC-GTAACCATGTTAACGTCTT-GTAAACTC-A--AATTAGAGGTA-G-AA-AAAAGTTTATG-TAGAACGAAAATT----------------------TGTAT-GGAAAGACGGGTGTTTAC-CGGG-A-A--TTA-TGGC---------AGATAG--------CAAGGTTT-GCGAGGAAAAATTAAGTACTTA
gi|10 : accttcataaaacgttctcaaataaattatgccaaaccacgccctcaaaggttccgaaaaaccgaaccggtaccgtgcagtatggcactaatttaaggtaatatttacattgtaggtaatctgtacatgtacaaatgtaatcttcatttatttctctcgatgggaacccgtaaagcgaggacgtGTA-AAC---G-A-GGGA-CTGA-TTTCCTTT--TGTT---TTTG---AA-TA-TCAACACCAA-T--A-TTGT--TTTTTC--TATTATGTTTT-GTTTTCA--AGAAAGATTTTT-AA--TTG-CTTTG-------------AT---------------------------------------CTCAATAAATCAGATGTA-G-AA-AAAAG--CATG-TATTACGGAAATTGGT----T-AAC------GTAAAGTAT-GGAAAGAC-GGCATTTTC-C-GG-ACA--TTAATAGCTACATTTTGA-ACAGTCTTATTGCAAGGTTT-ACGATG-AAAATTAGATATTTAAAAATGCAG-ATTATTTTA--TGGTGCCCAAGAGGCAATTCGA-TGTGCATATACGTA-CAAACAT-AAAACAATATACTA-GAA---AAA--GACTTA-TGCTTTGC-AAAATTCTGT--G---TA-TTCATT--TGC-G-----------T-----A---AG-GGGCG-CT-ACGCCA
gi|11 : -TTG-TTTTGT---AT-TGAA--ATG-GT-CTT---GC-G----------------TT-GTAAACTGAA--ATTTAGAGATA-G-AA-AAAAG--TATG--AGTACGAAAATTGGT----T-AAC------GTAATG----GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTAT-ACGATG-AAAATGGAGTACTTAAAAATGCAG-ATTACTCTA--TGGAGTCCAAGAGGCAATTCGA-TATG--TT-ATGTA-CAAACAT-AAGACAATGC--------------------TA-TGCTTTGC-AAAATTATGT--G---TA-TTCATT--TGC-GTT--AT-----TGAGC-A---AG-GGGCG-CT-ACGCCAC
gi|12 : AGAGGTA-G-AA-AAATG--TATG-TAGTACAAAAATTGGT----TTA-T------GTAATGTAT-GGAAAGAC-GGTTTTT-C-C-GG-A-AAATTA--------------A-ATAG--------TAAGGTTT-ACGATG-AAAACTGAGTACTTGAAAATGCAG-ATTA-TCTAATTGGAGTCCAAGAGGCAATTCGG-TGTA--TTTACGTA-CTAACATAAAGACAATGCACTT-AAA---AAA--GATCTA-TGTTTAGCAAAAATTCTGT--G---TA-TTCATT--TGC-GTT--AT-----TGCCGCA---AG-GGGTG-CT-ACGCCAC
gi|13 : AT-GGAAAGTC-GGTATTAACGC-GA-A-A--TTA-TGGC---------A-A--------------AGTTT-ACGAGG-A---TCCGGAGTTTAAA---------------TA--TG-AGTCCAAGAGGCAATTC---------------TA-CAAAC-T-AAGAAAATACACT----A---AAA--GATGTA-TGCTTTGC--AAATTCTGT--G---TA-TTCATT--TGC-AAT--ATTGCG-T-----A---AG-GGGCG-CT-ACG
gi|14 : TTACGTA-TAAACGT-AAGACAATATATTAGAAA---AAA--TACCTA-TGCTTCGC-AACATTATGT--G---TA-TTCATT--TGC-GTT--ATTGCG-T-----A---AG-GGGTG-CT-g
gi|15 : acaatgcagcacaatgcgaggcaatttccttcaaacgctcttgattgaaccaaaAAAGTTT-TCGATG-AATATTGGGTACTTGAAA-TACAA-ATCATTCTA--CGGAACCCAAGCGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATATATTA-CAA---AAA--GACCTA-TGCTTTGG-AACATT-TGT--G-------TTA-T--TGC-G-----------T-----A---AG-GTGCG-CT-ACGTCACttaaacccgattaa
gi|16 : T-TGAC--ATG-AT-TTT---GC-A----------------TT-ATAAACC---------AGATGTA-G-AA-AAA----------------------------------------GTAATGGAT-G-AAAGAC-GGCATTTTC-C-GG-A-----TA-TGTC-----------------------------TT-CCGATG-AAATTTGGGTACTTAAAA-TGCTG-AATATTCTA--TGGACCCCAAGAGGCAATTCGA-
gi|17 : C-CA--A-CTTTAA----AATATGGACA-------G-AA--T-AC-GAATACGAACAAAC-AGGCAGGC----A-TAC-ACT--CACAA-ATTTA-T-G-GTGGTTCTA-A-TTT-CGGTACA-AA-TAT-AT-A---AA-CT-AAAA-----AC-----------------TGTTCATCTCAT-TTT------AA-TAA--TT----T-TTGTA-C
gi|18 : ATGCAGGATTATTCTA--TG-AGTT-AAGAGGCAATTCGA-TGTG--TTTACATA-CAAACAT-AAGACAATACACTA-AAA---AAAATGATCTA-T------------TTCTGT--ATT-TATTTCATT--TGC-GCA--AT-----T-----G---CGAAGGCG-CT-ACGCCAC
gi|19 : -ATTATT-TA--TGAGATTCAAGAGGCAATTCGACTGTG--TTTAC-TA-CAAACAT-AAAACAATACACTA-AAA---AAA--AA---A-T-CTT------AATTCTGT--ATT-TA-TTTATTACTGC-GCT--ATTGCG-T-----A---AG-GGGCC-GT-ACGCCA
gi|2 : AAACT---GATGAAGTTTA--C-CATTG-TGACTTTA-TT-CA-AATTTGAACAATCCAT-CGCGA-CTTTAAGTAAACTACAGACAAGTCACTG-AACCT-AC-AATTACGGACAAAC-AAGCAG-C----A-TAC-ACT--CA-AA-ATTTA-TGG-GCGTTT-CA-AATTT-CTGTACG-AA-TATAATAA---AA-CT-GAAA-----ACGAGTTCA-T-AAAAGCTTGTTC--CTCAT-TTTAATA-CAATTAAATTT----T-TTGTA-CAC---G-A-GGGA-CTGC-TCTCGCTG--TGTAT--TTTT---AA-TG-CCG----TAACCT-GTTCGT--TGCTTT--TA-------TT-GTTTTCA--AAAAAGATTTTT-AAATTTG-TTTTGT---AT-TGAC--ATG-TT-CTTTTAGC-G----------------TT-GTAAACTC-A--AATTAGAGGAA-G-AA-AAAAG--TATG-TAGAACGAAAATT----------------------TGTAT-GGAAAGAC-GGTATTTAC-C-GGAA-A--GAA-TGGC---------A-AT-G--------CAAGGTTTAACGA-G-AAAATTAG
gi|20 : caataaacgttctttccaaaaataaaattatgcaaaccacggccctcaaagcgttccgaaaccgaacgtacgtgcatatgcctcaatacggtaaatactacatttgtagtaatcttacatgttcttcatttattttctctcgatggagcccgttaaaggaggacgtCAG-CTTATTCTA--TGGAGTTCAAGAGGCA-TTCGA--GTG--TTTACATAACAAACAT-AAGACAATACACTA-AAAAACAAA--GATCT--------------ATTCTGT--T---TA-TTCATT--TGC-GCT--ATTGCG-T-----A---AG-GGGCG-CTAACGCCt
gi|21 : TTACGTA-CAAACAT-ACGACAATATACTA-AAA---AAA--GATTCA-AGCTTCGC-ACATTTGCGTTGG---CA---CATT--TGC-GTT--GT-----TGCGC-A---AG-GGGTG-CT-ACGCC
gi|22 : taAAG--TATG-TAGTACGAAAATTGG----------------------------AAAGAC-GGCATTTAC-C-GG-A-A--TTA--GGC---------T-ATA----------------------TG-GCAATAG----C----AAGTGCAG-ATTATTCTA--AGGAGTCCAAAATGCAA
gi|23 : AAACAT-AAGACAATACACTA-AAA---AAA--GATCT--------------ATTCTGT--ATTTTA-TTCA-T--TGC-GCT--AT-----T-----GCGTAA-GGGCA-CT-ACGCCAC
gi|24 : A--AAAAAGATTTT--AAA-TTG-TTTTAT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACT
gi|25 : GGA-CTGA-TCTCGC-G--TGTA---TTCT---AA-TG-CCG----TGA-TG-G-TCTT--TGCTTt
gi|3 : AAAC----GATGAAGTTTAA-CGCATTGGTG-CTTTAATT-CACAATTTGAACCATCCAC-CG--AGCTTTAA-CACAATA-AGACA-------G-AAA-T-ACCAATTAGCGACAAACCAGGCTGGC----A--ACTACT--CA-A---TTTA-T-GCGCGGTTCCA-AATTTTCTGTACG-AAGTAT-AT-A---AA-CT-GAAA-----ACGAGTT-ACT-AAAAGC--GTTCATCTCAT-TTA--TACAAA-TTATTTT----T-TTGTAGCAC---G-A-GGGA-CTGA-T-TCGCTG--TGTA---TTTTA--AA-TG-CCG----TAA-TTCG-TCGT--TGC-TT--TA--------T-GTTTTTAACAAAAAGA-TTTT-AAA--TG-TTTTGT---AT-TGACTTATG-TT-CTT----C-G----------------TT-GTAAACTCAT--AATTAGAGTAA-GAAA-AAAAG--TATGTTAGAAC-AAAATT----------------------TGTATAGGAAAGAC--GTATTTAC-C-GG-A-AATCTA-TGGC---------A-A-AG--------CAAGGTTT-ACGATG-AAAA
gi|4 : cacctcattaaataacgttctcaaataaattattactgcaaaccaacccctcaaagcggcttccgacgcaaaccgtaccgctgcagattgcctaactaaggtaataatctacatttgtagtaattcttacatgttctcattatttctctcgcatgggagcccattaaagaggtacgctAAACTTTTGATCAAGTTTTA-C-TATTG-TGACTTTG-TT-CA-AATTTGAACCATCCGC-CG--A-CTTTAAATAAGGTATAGACA-------G-AA--T-AC-AATTACGGACAGAG-AGACAGGT----A-TAC-ACT--CA-AA-ATCTA-T-G-GCATTTCGA-GATTT-CGGTTTG-AA-TAA-AT-T---AC-CG-GAAA-----ACGAGTT-C----AAAGC-TGTTTATCTTATATTT--TA-AAA-TAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TTTCACTG--TGTA---TTTT---AA-TG-CCG----TGA-TT-G-TCGT--TGCTTT--TATTGT-TTTTTGTTTTCA--AAAAAGATTTTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AACCAGAGGTA-G-AA-AAAAG--TGTG-TAGTTCTAAAATTGGT----T-AAC------GCAATGTAT-GTAAAGGC-GGTGTTTTC-C-GG-A-A--TCA-TGGC---------A-ATAG--------CAAGGTTT-ATGATG-AAAATTGGGTACTTAGAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TATATGTA-CAAACAT-ATGACACTATACTT-GGA---AAA--GACCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGC-GTTGAAT-----T-----A---AG-GGGCG-CT-ACGCCACagtt
gi|5 : AAACT---GATGAAGTTTAAAC-CATTG--GACTTTA-TT-CA-AATTTGAACTATCCACGCG--A-CTTTAAG--AATTACAGACA-------G-AA--T-AC-AAT-A-GGACAAAC-AGGCAGGC----AATAC-ACA--TA-AACATTTAAT-G-GCGTTTCTA-ATTTC-CTGTACGGAA-TAT-AT-TTAAAA-CT-GAAA-----ACGAGTT-A-TTAAAAGC-TGTTCATCC-------------AA-T----TT----T-TTGTA-CACAACG-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTTTTTAA-TGGTCG----TAA-TT-G-TCGT---GCTTT--TATTGT-TTT-------CA--AAAAAGAATTTT-AAAATTG-TTTTGT---AT-TGAC--ATG-TTTCTT---GCCG----------------TTTGTAAACTCAA--A-TCAGAGGTAAG-AA-AAAAG--TATG-TAGAACAAAAATT--T----T--------------TGTAT-GGAAAGAC-GCTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGGTT-ACGATG-AAAAt
gi|6 : cctcataaaacacgttctcaaataaattatgcaaaccacgccctcaaagcgttcccgaaccgagccgtaccggtgcagtatgcctaataaggtaatactacatttgtagtaatttacatgtatcttatttattttctctgaatgggccgttaaggagcacgtGGCAGGC------TAT-ATT--CA-AATAGCTA-T-G-GTGTTTC-A-AATTT-CGG-ACG-AAATAT-AT-TTA-AA-CTTGAAATTAAAACGAGTT-A-T-AAA-GC-TGTTCATCTCAA-TTT------AA-TAA--GT----TGTTGTG-CAC---A-ACGGGAGCTGACTCTCATTGAATGTAATATTTT---AAATG-CCG----TGA-TT-G-TCGT--TGCTTTGATATTAT-TTT--GAGATAA--TAAAAGATT----------------AT---ATATGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AACAAAAG--TATG-TAGTACAAAAATTGGTGAAAT-A-CGTTACGGTAATGTAT-GGAAAGACTAGTATTTAC-C-GG-A-A--T---TGGC---------A-ATAG--------CAAG---T-A--ATGCAAGATT-------------------ATTA-TCTA--TGGAGT-CAAGA-GCAAATCGA-T-TGA-TTTACGTA-CAAAAAT-AAGACAATATACTA-AAA---AAA--GATCTATTGCTTTGC-AAATTCCTGT--G---TA-TTCATT--TGC-GTT--ATTGCG-T-----A---AA-GGGCGCCT-ACGCCaatt
gi|7 : caggTAAAATATAAACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TGC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATGT-CGGTACG-AA-TAT-AT-A---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-GGTTCATCTCAT-TTT------AA-TAA--TT----T-TTGTA-CAC---G-A-GGGA---------------------------------TG-CCA----TAA-TT-G-TCGT--TGCT-----ATTG----------------------ATTT---AAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAATTTAA--ATTTAGAGGTA-A-AA-AAAAG--TATG--AGTACGAAAATTGGT----CAA-C------GTAATGTAT-GGGAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGAGCACTTAAAAATGCAG-ATTACTCTA--TGGAGTCCAAGAGGCAATTCGA-TATG---TTATGTA-CAAACAT-AAGACAACGTACTA-AAT---AAA--GATCTA-TGCTTTGC-AAAATTCTGT--G---TA-TTCATT--TGC-GTT--ATTGAG-T-----A---AG-GGGCG-CT-ACGCCACca
gi|8 : AA-----ACGAGT------AAAAGC-TGTTCATCTCAT-TTT------AA-TA---TT----T-TAGTT-CAA---GGA-GGAA-CTGA-TCTCGCTG--TGTA---TATC---AA-TG-CCG----TGA-TT-G-TCGT--AGCTTT--CGTT---TTTT-AGTTTCA--AAAAATATTTT--GAA-TTG-ATTTGTGGTAT-TGCG--ATG-TT-TT---------------------------------------AACCAGATATA-G-AA-AAACT--T-------TACGTA-----------T-A--------GTAATGTAT-GGAAAGAC-GGTATTTTC-C-G--A-A--TTA-TAGC---------A-ATAG--------CAAGGTT--ACAATA-AAAACGGGGTACTTAAAA-TGCAG-ATTGTTCTA--CGGACCCCAAGAG-CAATTCAT-CGTG--TTTGCGCA-TAAACAT-AAGACAATGTACT--GAA---AAA--GACCAA-TACTTCGC--AAATTCTGT--G---TA-TTCATT--TGCGGTT--ATTTGCGT-----A---AG-GGGCG-CT-ACGCCAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TCAGACCTAAAACCAGTGCTACTACACCTCAGAAACGGAACGAACCAGTATACCGAGCAGAAACGAACCGTAACACATACAAGAGAGAACCGTACAGGCAAGAAAGGCAGAGAACCTACCGTAGAAAGAAAGACGAACACGTACCGTGCAAAAGAAGAACGATAACCCCGAAACCTCATAAAACATACATAAATATATGCAACACCAGCCCTCAAAGCGTCCGAACCGAACACGTACCGTGCAGTTAGCTAATAAGTAAGAACAACATTATAGTGATATCTATCATAATATTTTCACTGATTTATTTACTCTCGAATGGAGCCCGTAAAGGAGGACGTAATACTGATGAAGATAACACCATATGTGAGAGGATTTAATTCA
Unaligned ( gi|26 ): AAGAAGCATTCCGAACAATGTGTATAAGGAAGA
Alignments
lowQualScore : 1111 11 11 1111111 11 111111 1 1 1 22222 11111 111111 4444444444444 1111 111 111 3333333333 2222222222222222 5555555555555555555555 111111111 11111111 111111 33
lowQualScore : 4444 11 8 88 0 8 8 8 1 6 99 6 22 0 4 8888888 5 33 5 5 0 5 222222 5 66 0 0 5 5 5 3 5 0 5 1 5 0 5 11111 5 5 11111 333333 66 4 3333333333333 4 2222 9999 4 4 777 4 4 4 4 0 55 111 111 4 4 8888 4 4 4 55 66 6666666666 1 99 77 5 7 3 666 3 555 3 3 555 3 2222222222222222 3 77777 2 3 3 3 44 55 0 1 9999999999999999999999 2 5 1 2 2 2 2 77 2 111111111 2 0 00000000 2 5 0 8 2 1 33 3 77 2 2 55 444 33 0 2 1 88888 0 222222 2 33 2 33 2 33 2 2
lowQualScore : .... .. . .. . . . . . . .. . .. . . ....... . .. . . . . ...... . .. . . . . . . . . . . . . . ..... . . ..... ...... .. . ............. . .... .... . . ... . . . . . .. ... ... . . .... . . . .. .. .......... . .. .. . . . ... . ... . . ... . ................ . ..... . . . . .. .. . . ...................... . . . . . . . .. . ......... . . ........ . . . . . . .. . .. . . .. ... .. . . . ..... . ...... . .. . .. . .. . .
lowQualScore : 8888 88 0 88 8 0 0 0 4 7 22 7 99 3 0 6666666 7 66 7 7 7 7 888888 0 99 0 0 0 0 0 4 0 4 0 0 0 0 0 66666 0 0 11111 222222 22 4 0000000000000 4 7777 4444 4 0 888 4 4 0 0 7 55 000 000 0 0 5555 0 0 0 55 11 7777777777 9 55 44 6 3 6 444 3 000 3 3 888 3 1111111111111111 3 55555 4 3 3 3 22 33 8 4 0000000000000000000000 9 7 9 9 9 9 9 99 9 444444444 9 8 44444444 7 3 7 5 9 9 99 1 99 9 7 33 777 77 9 7 1 00000 7 222222 7 77 7 77 7 00 7 7
consensus : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACCATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TAC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATTT-CNGTACG-AA-TAT-AT-N---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-TGTTCATCTCAT-TT--------TT--AA-ATAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTT---AA-TG-CCG----TAA-TT-G-TCGT--TGCTTT--TATTG-T-TTTTGTTTTCA--AAAAAGA-TTTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AA-AAAAG--TATG-TAGTACGAAAATTGGT----T-A-C------GTAATGTAT-GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAAAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATACACTA-AAA---AAA--GATCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGC-GTT--A-TTGC-GTAAGGGGCG-CT-ACGCCAC
Reference ( family-101 ) : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACCATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TAC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATTT-CNGTACG-AA-TAT-AT-N---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-TGTTCATCTCAT-TT--------TT--AA-ATAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTT---AA-TG-CCG----TAA-TT-G-TCGT--TGCTTT--TATTG-T-TTTTGTTTTCA--AAAAAGA-TTTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AA-AAAAG--TATG-TAGTACGAAAATTGGT----T-A-C------GTAATGTAT-GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAAAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATACACTA-AAA---AAA--GATCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGC-GTT--A-TTG--GTAAGGGGCG-CT-ACGCCAC
gi|1 : AAACT---GATGAAGTTTAG-C-CATTG-TGATTTTA-TTTCA-AATTTGAACTATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------GGAA--TGAC-AATTACAGACAAAC-AGGCAGTATATAA-TAC-ACTTGCAGAA-ATTCA-T-G-GCGTTTCCAGAATTT-CTGTACA-AA-TAT-AT-T---AAACT-CAAA-----ATGAGTT-A-T-AAAAGC-GGTTCATCTCAT-TT--------TT--AATACAA--TTATTTT-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTT---TTTT---AA-TG-CCG----TAA-TT-G-TCGTAATGCTTT--TA---------TGTTTTCAC-AAAAAGA--TTTTAAA-TTGTTTTTGT---A--TGA---ATGTTT-CTT---GC-GTAACCATGTTAACGTCTT-GTAAACTC-A--AATTAGAGGTA-G-AA-AAAAGTTTATG-TAGAACGAAAATT----------------------TGTAT-GGAAAGACGGGTGTTTAC-CGGG-A-A--TTA-TGGC---------AGATAG--------CAAGGTTT-GCGAGGAAAAATTAAGTACTTA
gi|10 : accttcataaaacgttctcaaataaattatgccaaaccacgccctcaaaggttccgaaaaaccgaaccggtaccgtgcagtatggcactaatttaaggtaatatttacattgtaggtaatctgtacatgtacaaatgtaatcttcatttatttctctcgatgggaacccgtaaagcgaggacgtGTA-AAC---G-A-GGGA-CTGA-TTTCCTTT--TGTT---TTTG---AA-TA-TCAACACCAA-T--A-TTGT--TTTTTC--TATTA-TGTTTTGTTTTCA--AGAAAGA-TTTTTAA--TTG-CTTTG-------------AT---------------------------------------CTCAATAAATCAGATGTA-G-AA-AAAAG--CATG-TATTACGGAAATTGGT----T-AAC------GTAAAGTAT-GGAAAGAC-GGCATTTTC-C-GG-ACA--TTAATAGCTACATTTTGA-ACAGTCTTATTGCAAGGTTT-ACGATG-AAAATTAGATATTTAAAAATGCAG-ATTATTTTA--TGGTGCCCAAGAGGCAATTCGA-TGTGCATATACGTA-CAAACAT-AAAACAATATACTA-GAA---AAA--GACTTA-TGCTTTGC-AAAATTCTGT--G---TA-TTCATT--TGC-------------GTAAGGGGCG-CT-ACGCCA
gi|11 : -TTG-TTTTGT---AT-TGAA--ATG-GT-CTT---GC-G----------------TT-GTAAACTGAA--ATTTAGAGATA-G-AA-AAAAG--TATG--AGTACGAAAATTGGT----T-AAC------GTAATG----GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTAT-ACGATG-AAAATGGAGTACTTAAAAATGCAG-ATTACTCTA--TGGAGTCCAAGAGGCAATTCGA-TATG--TT-ATGTA-CAAACAT-AAGACAATGC--------------------TA-TGCTTTGC-AAAATTATGT--G---TA-TTCATT--TGC-GTT--A-TTGA-GCAAGGGGCG-CT-ACGCCAC
gi|12 : AGAGGTA-G-AA-AAATG--TATG-TAGTACAAAAATTGGT----TTA-T------GTAATGTAT-GGAAAGAC-GGTTTTT-C-C-GG-A-AAATTA--------------A-ATAG--------TAAGGTTT-ACGATG-AAAACTGAGTACTTGAAAATGCAG-ATTA-TCTAATTGGAGTCCAAGAGGCAATTCGG-TGTA--TTTACGTA-CTAACATAAAGACAATGCACTT-AAA---AAA--GATCTA-TGTTTAGCAAAAATTCTGT--G---TA-TTCATT--TGC-GTT--A-TTGCCGCAAGGGGTG-CT-ACGCCAC
gi|13 : AT-GGAAAGTC-GGTATTAACGC-GA-A-A--TTA-TGGC---------A-A--------------AGTTT-ACGAGG-A---TCCGGAGTTTAAA---------------TA--TG-AGTCCAAGAGGCAATTC---------------TA-CAAAC-T-AAGAAAATACACT----A---AAA--GATGTA-TGCTTTGC--AAATTCTGT--G---TA-TTCATT--TGC-AAT--A-TTGC-GTAAGGGGCG-CT-ACG
gi|14 : TTACGTA-TAAACGT-AAGACAATATATTAGAAA---AAA--TACCTA-TGCTTCGC-AACATTATGT--G---TA-TTCATT--TGC-GTT--A-TTGC-GTAAGGGGTG-CT-g
gi|15 : acaatgcagcacaatgcgaggcaatttccttcaaacgctcttgattgaaccaaaAAAGTTT-TCGATG-AATATTGGGTACTTGAAA-TACAA-ATCATTCTA--CGGAACCCAAGCGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATATATTA-CAA---AAA--GACCTA-TGCTTTGG-AA-------------------CATT--TGT-GTT--A-TTGC-GTAAGGTGCG-CT-ACGTCACttaaacccgattaa
gi|16 : T-TGAC--ATG-AT-TTT---GC-A----------------TT-ATAAACC---------AGATGTA-G-AA-AAA----------------------------------------GTAATGGAT-G-AAAGAC-GGCATTTTC-C-GG-A-----TA-TGTC-----------------------------TT-CCGATG-AAATTTGGGTACTTAAAA-TGCTG-AATATTCTA--TGGACCCCAAGAGGCAATTCGA-
gi|17 : C-CA--A-CTTTAA----AATATGGACA-------G-AA--T-AC-GAATACGAACAAAC-AGGCAGGC----A-TAC-ACT--CACAA-ATTTA-T-G-GTGGTTCTA-A-TTT-CGGTACA-AA-TAT-AT-A---AA-CT-AAAA-----AC-----------------TGTTCATCTCAT-TT--------T----A-ATAA--TT----T-TTGTA-C
gi|18 : ATGCAGGATTATTCTA--TG-AGTT-AAGAGGCAATTCGA-TGTG--TTTACATA-CAAACAT-AAGACAATACACTA-AAA---AAAATGATCTA-T------------TTCTGT--ATT-TATTTCATT--TGC-GCA--A-TTG--CGAA--GGCG-CT-ACGCCAC
gi|19 : -ATTATT-TA--TGAGATTCAAGAGGCAATTCGACTGTG--TTTAC-TA-CAAACAT-AAAACAATACACTA-AAA---AAA--AA---A-T-CTT------AATTCTGT--ATT-TA-TTTATTACTGC-GCT--A-TTGC-GTAAGGGGCC-GT-ACGCCA
gi|2 : AAACT---GATGAAGTTTA--C-CATTG-TGACTTTA-TT-CA-AATTTGAACAATCCAT-CGCGA-CTTTAAGTAAACTACAGACAAGTCACTG-AACCT-AC-AATTACGGACAAAC-AAGCAG-C----A-TAC-ACT--CA-AA-ATTTA-TGG-GCGTTT-CA-AATTT-CTGTACG-AA-TATAATAA---AA-CT-GAAA-----ACGAGTTCA-T-AAAAGCTTGTTC--CTCAT-TTTAATACAATT--AA-AT----TT----T-TTGTA-CAC---G-A-GGGA-CTGC-TCTCGCTG--TGTAT--TTTT---AA-TG-CCG----TAACCT-GTTCGT--TGCTTT--TA--------TTGTTTTCA--AAAAAGA-TTTTTAAATTTG-TTTTGT---AT-TGAC--ATG-TT-CTTTTAGC-G----------------TT-GTAAACTC-A--AATTAGAGGAA-G-AA-AAAAG--TATG-TAGAACGAAAATT----------------------TGTAT-GGAAAGAC-GGTATTTAC-C-GGAA-A--GAA-TGGC---------A-AT-G--------CAAGGTTTAACGA-G-AAAATTAG
gi|20 : caataaacgttctttccaaaaataaaattatgcaaaccacggccctcaaagcgttccgaaaccgaacgtacgtgcatatgcctcaatacggtaaatactacatttgtagtaatcttacatgttcttcatttattttctctcgatggagcccgttaaaggaggacgtCAG-CTTATTCTA--TGGAGTTCAAGAGGCA-TTCGA--GTG--TTTACATAACAAACAT-AAGACAATACACTA-AAAAACAAA--GATCT--------------ATTCTGT--T---TA-TTCATT--TGC-GCT--A-TTGC-GTAAGGGGCG-CTAACGCCt
gi|21 : TTACGTA-CAAACAT-ACGACAATATACTA-AAA---AAA--GATTCA-AGCTTCGC-ACATTTGCGTTGG---CA---CATT--TGC-GTT--G-TTGC-GCAAGGGGTG-CT-ACGCC
gi|22 : taAAG--TATG-TAGTACGAAAATTGG----------------------------AAAGAC-GGCATTTAC-C-GG-A-A--TTA--GGC---------T-ATA----------------------TG-GCAATAG----C----AAGTGCAG-ATTATTCTA--AGGAGTCCAAAATGCAA
gi|23 : AAACAT-AAGACAATACACTA-AAA---AAA--GATCT--------------ATTCTGT--ATTTTA-TTCA-T--TGC-GCT--A-TTGC-GTAA-GGGCA-CT-ACGCCAC
gi|24 : A--AAAAAGA-TTTT-AAA-TTG-TTTTAT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACT
gi|25 : GGA-CTGA-TCTCGC-G--TGTA---TTCT---AA-TG-CCG----TGA-TG-G-TCTT--TGCTTt
gi|3 : AAAC----GATGAAGTTTAA-CGCATTGGTG-CTTTAATT-CACAATTTGAACCATCCAC-CG--AGCTTTAA-CACAATA-AGACA-------G-AAA-T-ACCAATTAGCGACAAACCAGGCTGGC----A--ACTACT--CA-A---TTTA-T-GCGCGGTTCCA-AATTTTCTGTACG-AAGTAT-AT-A---AA-CT-GAAA-----ACGAGTT-ACT-AAAAGC--GTTCATCTCAT-TT--------ATACAA-ATTATTTT----T-TTGTAGCAC---G-A-GGGA-CTGA-T-TCGCTG--TGTA---TTTTA--AA-TG-CCG----TAA-TTCG-TCGT--TGC-TT--TA---------TGTTTTTAACAAAAAGA--TTTTAAA--TG-TTTTGT---AT-TGACTTATG-TT-CTT----C-G----------------TT-GTAAACTCAT--AATTAGAGTAA-GAAA-AAAAG--TATGTTAGAAC-AAAATT----------------------TGTATAGGAAAGAC--GTATTTAC-C-GG-A-AATCTA-TGGC---------A-A-AG--------CAAGGTTT-ACGATG-AAAA
gi|4 : cacctcattaaataacgttctcaaataaattattactgcaaaccaacccctcaaagcggcttccgacgcaaaccgtaccgctgcagattgcctaactaaggtaataatctacatttgtagtaattcttacatgttctcattatttctctcgcatgggagcccattaaagaggtacgctAAACTTTTGATCAAGTTTTA-C-TATTG-TGACTTTG-TT-CA-AATTTGAACCATCCGC-CG--A-CTTTAAATAAGGTATAGACA-------G-AA--T-AC-AATTACGGACAGAG-AGACAGGT----A-TAC-ACT--CA-AA-ATCTA-T-G-GCATTTCGA-GATTT-CGGTTTG-AA-TAA-AT-T---AC-CG-GAAA-----ACGAGT----T-CAAAGC-TGTTTATCTTATATT--------TTA-AA-ATAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TTTCACTG--TGTA---TTTT---AA-TG-CCG----TGA-TT-G-TCGT--TGCTTT--TATTGTT-TTTTGTTTTCA--AAAAAGATTTTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AACCAGAGGTA-G-AA-AAAAG--TGTG-TAGTTCTAAAATTGGT----TAA-C------GCAATGTAT-GTAAAGGC-GGTGTTTTC-C-GG-A-A--TCA-TGGC---------A-ATAG--------CAAGGTTT-ATGATG-AAAATTGGGTACTTAGAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TATATGTA-CAAACAT-ATGACACTATACTT-GGA---AAA--GACCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGC-GTTGAA-T-----TAAGGGGCG-CT-ACGCCACagtt
gi|5 : AAACT---GATGAAGTTTAAAC-CATTG--GACTTTA-TT-CA-AATTTGAACTATCCACGCG--A-CTTTAAG--AATTACAGACA-------G-AA--T-AC-AAT-A-GGACAAAC-AGGCAGGC----AATAC-ACA--TA-AACATTTAAT-G-GCGTTTCTA-ATTTC-CTGTACGGAA-TAT-AT-TTAAAA-CT-GAAA-----ACGAGTT-A-TTAAAAGC-TGTTCATCC-------------------A-AT----TT----T-TTGTA-CACAACG-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTTTTTAA-TGGTCG----TAA-TT-G-TCGT---GCTTT--TATTG-T-TTT------CA--AAAAAGA-ATTTTAAAATTG-TTTTGT---AT-TGAC--ATG-TTTCTT---GCCG----------------TTTGTAAACTCAA--A-TCAGAGGTAAG-AA-AAAAG--TATG-TAGAACAAAAATT--T----T--------------TGTAT-GGAAAGAC-GCTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGGTT-ACGATG-AAAAt
gi|6 : cctcataaaacacgttctcaaataaattatgcaaaccacgccctcaaagcgttcccgaaccgagccgtaccggtgcagtatgcctaataaggtaatactacatttgtagtaatttacatgtatcttatttattttctctgaatgggccgttaaggagcacgtGGCAGGC------TAT-ATT--CA-AATAGCTA-T-G-GTGTTTC-A-AATTT-CGG-ACG-AAATAT-AT-TTA-AA-CTTGAAATTAAAACGAGTT-A-T-AAA-GC-TGTTCATCTCAA-TT--------T----A-ATAA--GT----TGTTGTG-CAC---A-ACGGGAGCTGACTCTCATTGAATGTAATATTTT---AAATG-CCG----TGA-TT-G-TCGT--TGCTTTGATATTA-T-TTT-GAGATAA--TAAAAGA-TT---------------AT---ATATGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AACAAAAG--TATG-TAGTACAAAAATTGGTGAAAT-A-CGTTACGGTAATGTAT-GGAAAGACTAGTATTTAC-C-GG-A-A--T---TGGC---------A-ATAG--------CAAG---T-A--ATGCAAGATT-------------------ATTA-TCTA--TGGAGT-CAAGA-GCAAATCGA-T-TGA-TTTACGTA-CAAAAAT-AAGACAATATACTA-AAA---AAA--GATCTATTGCTTTGC-AAATTCCTGT--G---TA-TTCATT--TGC-GTT--A-TTGC-GTAAAGGGCGCCT-ACGCCaatt
gi|7 : caggTAAAATATAAACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TGC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATGT-CGGTACG-AA-TAT-AT-A---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-GGTTCATCTCAT-TT--------T----A-ATAA--TT----T-TTGTA-CAC---G-A-GGGA---------------------------------TG-CCA----TAA-TT-G-TCGT--TGCT-----ATTG----------------------A-TTT--AAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAATTTAA--ATTTAGAGGTA-A-AA-AAAAG--TATG--AGTACGAAAATTGGT----CAA-C------GTAATGTAT-GGGAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGAGCACTTAAAAATGCAG-ATTACTCTA--TGGAGTCCAAGAGGCAATTCGA-TATG---TTATGTA-CAAACAT-AAGACAACGTACTA-AAT---AAA--GATCTA-TGCTTTGC-AAAATTCTGT--G---TA-TTCATT--TGC-GTT--A-TTGA-GTAAGGGGCG-CT-ACGCCACca
gi|8 : AA-----ACGAGT------AAAAGC-TGTTCATCTCAT-TT--------T----A-ATA---TT----T-TAGTT-CAA---GGA-GGAA-CTGA-TCTCGCTG--TGTA---TATC---AA-TG-CCG----TGA-TT-G-TCGT--AGCTTT--CGTT----TTTTAGTTTCA--AAAAATA-TTTT-GAA-TTG-ATTTGTGGTAT-TGCG--ATG-TT-TT---------------------------------------AACCAGATATA-G-AA-AAACT--T-------TACGTA-----------T-A--------GTAATGTAT-GGAAAGAC-GGTATTTTC-C-G--A-A--TTA-TAGC---------A-ATAG--------CAAGGTT--ACAATA-AAAACGGGGTACTTAAAA-TGCAG-ATTGTTCTA--CGGACCCCAAGAG-CAATTCAT-CGTG--TTTGCGCA-TAAACAT-AAGACAATGTACT--GAA---AAA--GACCAA-TACTTCGC--AAATTCTGT--G---TA-TTCATT--TGCGGTT--ATTTGC-GTAAGGGGCG-CT-ACGCCAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TCAGACCTAAAACCAGTGCTACTACACCTCAGAAACGGAACGAACCAGTATACCGAGCAGAAACGAACCGTAACACATACAAGAGAGAACCGTACAGGCAAGAAAGGCAGAGAACCTACCGTAGAAAGAAAGACGAACACGTACCGTGCAAAAGAAGAACGATAACCCCGAAACCTCATAAAACATACATAAATATATGCAACACCAGCCCTCAAAGCGTCCGAACCGAACACGTACCGTGCAGTTAGCTAATAAGTAAGAACAACATTATAGTGATATCTATCATAATATTTTCACTGATTTATTTACTCTCGAATGGAGCCCGTAAAGGAGGACGTAATACTGATGAAGATAACACCATATGTGAGAGGATTTAATTCA
Unaligned ( gi|26 ): AAGAAGCATTCCGAACAATGTGTATAAGGAAGA
Alignments
lowQualScore : 1111 11 11 1111111 11 111111 1 1 1 22222 11111 111111 4444444444444 1111 111 111 3333333333 2222222222222222 5555555555555555555555 111111111 11111111 111111
lowQualScore : 4444 11 8 88 0 8 8 8 1 6 99 6 22 0 4 8888888 5 33 5 5 0 5 222222 5 66 0 0 5 5 5 3 5 0 5 1 5 0 5 11111 5 5 11111 333333 66 4 3333333333333 4 2222 9999 4 4 777 4 4 4 4 0 55 111 111 4 4 8888 4 4 4 55 66 6666666666 1 99 77 5 7 3 666 3 555 3 3 555 3 2222222222222222 3 77777 2 3 3 3 44 55 0 1 9999999999999999999999 2 5 1 2 2 2 2 77 2 111111111 2 0 00000000 2 5 0 8 2 1 33 3 77 2 2 33 444 33 0 2 1 6 33333 222222 2 33 2 33 2 2 2 2
lowQualScore : .... .. . .. . . . . . . .. . .. . . ....... . .. . . . . ...... . .. . . . . . . . . . . . . . ..... . . ..... ...... .. . ............. . .... .... . . ... . . . . . .. ... ... . . .... . . . .. .. .......... . .. .. . . . ... . ... . . ... . ................ . ..... . . . . .. .. . . ...................... . . . . . . . .. . ......... . . ........ . . . . . . .. . .. . . .. ... .. . . . . ..... ...... . .. . .. . . . .
lowQualScore : 8888 88 0 88 8 0 0 0 4 7 22 7 99 3 0 6666666 7 66 7 7 7 7 888888 0 99 0 0 0 0 0 4 0 4 0 0 0 0 0 66666 0 0 11111 222222 22 4 0000000000000 4 7777 4444 4 0 888 4 4 0 0 7 55 000 000 0 0 5555 0 0 0 55 11 7777777777 9 55 44 6 3 6 444 3 000 3 3 888 3 1111111111111111 3 55555 4 3 3 3 22 33 8 4 0000000000000000000000 9 7 9 9 9 9 9 99 9 444444444 9 8 44444444 7 3 7 5 9 9 99 1 99 9 7 00 777 77 9 7 1 4 99999 222222 7 77 7 77 7 7 7 7
consensus : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACCATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TAC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATTT-CNGTACG-AA-TAT-AT-N---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-TGTTCATCTCAT-TT--------TT--AA-ATAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTT---AA-TG-CCG----TAA-TT-G-TCGT--TGCTTT--TATTG-T-TTTTGTTTTCA--AAAAAGA-TTTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AA-AAAAG--TATG-TAGTACGAAAATTGGT----T-A-C------GTAATGTAT-GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAAAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATACACTA-AAA---AAA--GATCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAGGGGCG-CT-ACGCCAC
Reference ( family-101 ) : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACCATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TAC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATTT-CNGTACG-AA-TAT-AT-N---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-TGTTCATCTCAT-TT--------TT--AA-ATAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTT---AA-TG-CCG----TAA-TT-G-TCGT--TGCTTT--TATTG-T-TTTTGTTTTCA--AAAAAGA-TTTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AA-AAAAG--TATG-TAGTACGAAAATTGGT----T-A-C------GTAATGTAT-GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAAAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATACACTA-AAA---AAA--GATCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAGGGGCG-CT-ACGCCAC
gi|1 : AAACT---GATGAAGTTTAG-C-CATTG-TGATTTTA-TTTCA-AATTTGAACTATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------GGAA--TGAC-AATTACAGACAAAC-AGGCAGTATATAA-TAC-ACTTGCAGAA-ATTCA-T-G-GCGTTTCCAGAATTT-CTGTACA-AA-TAT-AT-T---AAACT-CAAA-----ATGAGTT-A-T-AAAAGC-GGTTCATCTCAT-TT--------TT--AATACAA--TTATTTT-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTT---TTTT---AA-TG-CCG----TAA-TT-G-TCGTAATGCTTT--TA---------TGTTTTCAC-AAAAAGA--TTTTAAA-TTGTTTTTGT---A--TGA---ATGTTT-CTT---GC-GTAACCATGTTAACGTCTT-GTAAACTC-A--AATTAGAGGTA-G-AA-AAAAGTTTATG-TAGAACGAAAATT----------------------TGTAT-GGAAAGACGGGTGTTTAC-CGGG-A-A--TTA-TGGC---------AGATAG--------CAAGGTTT-GCGAGGAAAAATTAAGTACTTA
gi|10 : accttcataaaacgttctcaaataaattatgccaaaccacgccctcaaaggttccgaaaaaccgaaccggtaccgtgcagtatggcactaatttaaggtaatatttacattgtaggtaatctgtacatgtacaaatgtaatcttcatttatttctctcgatgggaacccgtaaagcgaggacgtGTA-AAC---G-A-GGGA-CTGA-TTTCCTTT--TGTT---TTTG---AA-TA-TCAACACCAA-T--A-TTGT--TTTTTC--TATTA-TGTTTTGTTTTCA--AGAAAGA-TTTTTAA--TTG-CTTTG-------------AT---------------------------------------CTCAATAAATCAGATGTA-G-AA-AAAAG--CATG-TATTACGGAAATTGGT----T-AAC------GTAAAGTAT-GGAAAGAC-GGCATTTTC-C-GG-ACA--TTAATAGCTACATTTTGA-ACAGTCTTATTGCAAGGTTT-ACGATG-AAAATTAGATATTTAAAAATGCAG-ATTATTTTA--TGGTGCCCAAGAGGCAATTCGA-TGTGCATATACGTA-CAAACAT-AAAACAATATACTA-GAA---AAA--GACTTA-TGCTTTGC-AAAATTCTGT--G---TA-TTCAT-------------TT-G-CGTAAGGGGCG-CT-ACGCCA
gi|11 : -TTG-TTTTGT---AT-TGAA--ATG-GT-CTT---GC-G----------------TT-GTAAACTGAA--ATTTAGAGATA-G-AA-AAAAG--TATG--AGTACGAAAATTGGT----T-AAC------GTAATG----GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTAT-ACGATG-AAAATGGAGTACTTAAAAATGCAG-ATTACTCTA--TGGAGTCCAAGAGGCAATTCGA-TATG--TT-ATGTA-CAAACAT-AAGACAATGC--------------------TA-TGCTTTGC-AAAATTATGT--G---TA-TTCATT--TGCG-TT--ATT-G-AGCAAGGGGCG-CT-ACGCCAC
gi|12 : AGAGGTA-G-AA-AAATG--TATG-TAGTACAAAAATTGGT----TTA-T------GTAATGTAT-GGAAAGAC-GGTTTTT-C-C-GG-A-AAATTA--------------A-ATAG--------TAAGGTTT-ACGATG-AAAACTGAGTACTTGAAAATGCAG-ATTA-TCTAATTGGAGTCCAAGAGGCAATTCGG-TGTA--TTTACGTA-CTAACATAAAGACAATGCACTT-AAA---AAA--GATCTA-TGTTTAGCAAAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-GCCGCAAGGGGTG-CT-ACGCCAC
gi|13 : AT-GGAAAGTC-GGTATTAACGC-GA-A-A--TTA-TGGC---------A-A--------------AGTTT-ACGAGG-A---TCCGGAGTTTAAA---------------TA--TG-AGTCCAAGAGGCAATTC---------------TA-CAAAC-T-AAGAAAATACACT----A---AAA--GATGTA-TGCTTTGC--AAATTCTGT--G---TA-TTCATT--TGCA-AT--ATT-G-CGTAAGGGGCG-CT-ACG
gi|14 : TTACGTA-TAAACGT-AAGACAATATATTAGAAA---AAA--TACCTA-TGCTTCGC-AACATTATGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAGGGGTG-CT-g
gi|15 : acaatgcagcacaatgcgaggcaatttccttcaaacgctcttgattgaaccaaaAAAGTTT-TCGATG-AATATTGGGTACTTGAAA-TACAA-ATCATTCTA--CGGAACCCAAGCGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATATATTA-CAA---AAA--GACCTA-TGCTTTGG-AA-------------------CATT--TGTG-TT--ATT-G-CGTAAGGTGCG-CT-ACGTCACttaaacccgattaa
gi|16 : T-TGAC--ATG-AT-TTT---GC-A----------------TT-ATAAACC---------AGATGTA-G-AA-AAA----------------------------------------GTAATGGAT-G-AAAGAC-GGCATTTTC-C-GG-A-----TA-TGTC-----------------------------TT-CCGATG-AAATTTGGGTACTTAAAA-TGCTG-AATATTCTA--TGGACCCCAAGAGGCAATTCGA-
gi|17 : C-CA--A-CTTTAA----AATATGGACA-------G-AA--T-AC-GAATACGAACAAAC-AGGCAGGC----A-TAC-ACT--CACAA-ATTTA-T-G-GTGGTTCTA-A-TTT-CGGTACA-AA-TAT-AT-A---AA-CT-AAAA-----AC-----------------TGTTCATCTCAT-TT--------T----A-ATAA--TT----T-TTGTA-C
gi|18 : ATGCAGGATTATTCTA--TG-AGTT-AAGAGGCAATTCGA-TGTG--TTTACATA-CAAACAT-AAGACAATACACTA-AAA---AAAATGATCTA-T------------TTCTGT--ATT-TATTTCATT--TGCG-CA--ATT-G-CG-AA--GGCG-CT-ACGCCAC
gi|19 : -ATTATT-TA--TGAGATTCAAGAGGCAATTCGACTGTG--TTTAC-TA-CAAACAT-AAAACAATACACTA-AAA---AAA--AA---A-T-CTT------AATTCTGT--ATT-TA-TTTATTACTGCG-CT--ATT-G-CGTAAGGGGCC-GT-ACGCCA
gi|2 : AAACT---GATGAAGTTTA--C-CATTG-TGACTTTA-TT-CA-AATTTGAACAATCCAT-CGCGA-CTTTAAGTAAACTACAGACAAGTCACTG-AACCT-AC-AATTACGGACAAAC-AAGCAG-C----A-TAC-ACT--CA-AA-ATTTA-TGG-GCGTTT-CA-AATTT-CTGTACG-AA-TATAATAA---AA-CT-GAAA-----ACGAGTTCA-T-AAAAGCTTGTTC--CTCAT-TTTAATACAATT--AA-AT----TT----T-TTGTA-CAC---G-A-GGGA-CTGC-TCTCGCTG--TGTAT--TTTT---AA-TG-CCG----TAACCT-GTTCGT--TGCTTT--TA--------TTGTTTTCA--AAAAAGA-TTTTTAAATTTG-TTTTGT---AT-TGAC--ATG-TT-CTTTTAGC-G----------------TT-GTAAACTC-A--AATTAGAGGAA-G-AA-AAAAG--TATG-TAGAACGAAAATT----------------------TGTAT-GGAAAGAC-GGTATTTAC-C-GGAA-A--GAA-TGGC---------A-AT-G--------CAAGGTTTAACGA-G-AAAATTAG
gi|20 : caataaacgttctttccaaaaataaaattatgcaaaccacggccctcaaagcgttccgaaaccgaacgtacgtgcatatgcctcaatacggtaaatactacatttgtagtaatcttacatgttcttcatttattttctctcgatggagcccgttaaaggaggacgtCAG-CTTATTCTA--TGGAGTTCAAGAGGCA-TTCGA--GTG--TTTACATAACAAACAT-AAGACAATACACTA-AAAAACAAA--GATCT--------------ATTCTGT--T---TA-TTCATT--TGCG-CT--ATT-G-CGTAAGGGGCG-CTAACGCCt
gi|21 : TTACGTA-CAAACAT-ACGACAATATACTA-AAA---AAA--GATTCA-AGCTTCGC-ACATTTGCGTTGG---CA---CATT--TGCG-TT--GTT-G-CGCAAGGGGTG-CT-ACGCC
gi|22 : taAAG--TATG-TAGTACGAAAATTGG----------------------------AAAGAC-GGCATTTAC-C-GG-A-A--TTA--GGC---------T-ATA----------------------TG-GCAATAG----C----AAGTGCAG-ATTATTCTA--AGGAGTCCAAAATGCAA
gi|23 : AAACAT-AAGACAATACACTA-AAA---AAA--GATCT--------------ATTCTGT--ATTTTA-TTCA-T--TGCG-CT--ATT-G-CGTAA-GGGCA-CT-ACGCCAC
gi|24 : A--AAAAAGA-TTTT-AAA-TTG-TTTTAT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACT
gi|25 : GGA-CTGA-TCTCGC-G--TGTA---TTCT---AA-TG-CCG----TGA-TG-G-TCTT--TGCTTt
gi|3 : AAAC----GATGAAGTTTAA-CGCATTGGTG-CTTTAATT-CACAATTTGAACCATCCAC-CG--AGCTTTAA-CACAATA-AGACA-------G-AAA-T-ACCAATTAGCGACAAACCAGGCTGGC----A--ACTACT--CA-A---TTTA-T-GCGCGGTTCCA-AATTTTCTGTACG-AAGTAT-AT-A---AA-CT-GAAA-----ACGAGTT-ACT-AAAAGC--GTTCATCTCAT-TT--------ATACAA-ATTATTTT----T-TTGTAGCAC---G-A-GGGA-CTGA-T-TCGCTG--TGTA---TTTTA--AA-TG-CCG----TAA-TTCG-TCGT--TGC-TT--TA---------TGTTTTTAACAAAAAGA--TTTTAAA--TG-TTTTGT---AT-TGACTTATG-TT-CTT----C-G----------------TT-GTAAACTCAT--AATTAGAGTAA-GAAA-AAAAG--TATGTTAGAAC-AAAATT----------------------TGTATAGGAAAGAC--GTATTTAC-C-GG-A-AATCTA-TGGC---------A-A-AG--------CAAGGTTT-ACGATG-AAAA
gi|4 : cacctcattaaataacgttctcaaataaattattactgcaaaccaacccctcaaagcggcttccgacgcaaaccgtaccgctgcagattgcctaactaaggtaataatctacatttgtagtaattcttacatgttctcattatttctctcgcatgggagcccattaaagaggtacgctAAACTTTTGATCAAGTTTTA-C-TATTG-TGACTTTG-TT-CA-AATTTGAACCATCCGC-CG--A-CTTTAAATAAGGTATAGACA-------G-AA--T-AC-AATTACGGACAGAG-AGACAGGT----A-TAC-ACT--CA-AA-ATCTA-T-G-GCATTTCGA-GATTT-CGGTTTG-AA-TAA-AT-T---AC-CG-GAAA-----ACGAGT----T-CAAAGC-TGTTTATCTTATATT--------TTA-AA-ATAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TTTCACTG--TGTA---TTTT---AA-TG-CCG----TGA-TT-G-TCGT--TGCTTT--TATTGTT-TTTTGTTTTCA--AAAAAGATTTTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AACCAGAGGTA-G-AA-AAAAG--TGTG-TAGTTCTAAAATTGGT----TAA-C------GCAATGTAT-GTAAAGGC-GGTGTTTTC-C-GG-A-A--TCA-TGGC---------A-ATAG--------CAAGGTTT-ATGATG-AAAATTGGGTACTTAGAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TATATGTA-CAAACAT-ATGACACTATACTT-GGA---AAA--GACCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TTGAAT------TAAGGGGCG-CT-ACGCCACagtt
gi|5 : AAACT---GATGAAGTTTAAAC-CATTG--GACTTTA-TT-CA-AATTTGAACTATCCACGCG--A-CTTTAAG--AATTACAGACA-------G-AA--T-AC-AAT-A-GGACAAAC-AGGCAGGC----AATAC-ACA--TA-AACATTTAAT-G-GCGTTTCTA-ATTTC-CTGTACGGAA-TAT-AT-TTAAAA-CT-GAAA-----ACGAGTT-A-TTAAAAGC-TGTTCATCC-------------------A-AT----TT----T-TTGTA-CACAACG-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTTTTTAA-TGGTCG----TAA-TT-G-TCGT---GCTTT--TATTG-T-TTT------CA--AAAAAGA-ATTTTAAAATTG-TTTTGT---AT-TGAC--ATG-TTTCTT---GCCG----------------TTTGTAAACTCAA--A-TCAGAGGTAAG-AA-AAAAG--TATG-TAGAACAAAAATT--T----T--------------TGTAT-GGAAAGAC-GCTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGGTT-ACGATG-AAAAt
gi|6 : cctcataaaacacgttctcaaataaattatgcaaaccacgccctcaaagcgttcccgaaccgagccgtaccggtgcagtatgcctaataaggtaatactacatttgtagtaatttacatgtatcttatttattttctctgaatgggccgttaaggagcacgtGGCAGGC------TAT-ATT--CA-AATAGCTA-T-G-GTGTTTC-A-AATTT-CGG-ACG-AAATAT-AT-TTA-AA-CTTGAAATTAAAACGAGTT-A-T-AAA-GC-TGTTCATCTCAA-TT--------T----A-ATAA--GT----TGTTGTG-CAC---A-ACGGGAGCTGACTCTCATTGAATGTAATATTTT---AAATG-CCG----TGA-TT-G-TCGT--TGCTTTGATATTA-T-TTT-GAGATAA--TAAAAGA-TT---------------AT---ATATGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AACAAAAG--TATG-TAGTACAAAAATTGGTGAAAT-A-CGTTACGGTAATGTAT-GGAAAGACTAGTATTTAC-C-GG-A-A--T---TGGC---------A-ATAG--------CAAG---T-A--ATGCAAGATT-------------------ATTA-TCTA--TGGAGT-CAAGA-GCAAATCGA-T-TGA-TTTACGTA-CAAAAAT-AAGACAATATACTA-AAA---AAA--GATCTATTGCTTTGC-AAATTCCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAAGGGCGCCT-ACGCCaatt
gi|7 : caggTAAAATATAAACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TGC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATGT-CGGTACG-AA-TAT-AT-A---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-GGTTCATCTCAT-TT--------T----A-ATAA--TT----T-TTGTA-CAC---G-A-GGGA---------------------------------TG-CCA----TAA-TT-G-TCGT--TGCT-----ATTG----------------------A-TTT--AAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAATTTAA--ATTTAGAGGTA-A-AA-AAAAG--TATG--AGTACGAAAATTGGT----CAA-C------GTAATGTAT-GGGAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGAGCACTTAAAAATGCAG-ATTACTCTA--TGGAGTCCAAGAGGCAATTCGA-TATG---TTATGTA-CAAACAT-AAGACAACGTACTA-AAT---AAA--GATCTA-TGCTTTGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-AGTAAGGGGCG-CT-ACGCCACca
gi|8 : AA-----ACGAGT------AAAAGC-TGTTCATCTCAT-TT--------T----A-ATA---TT----T-TAGTT-CAA---GGA-GGAA-CTGA-TCTCGCTG--TGTA---TATC---AA-TG-CCG----TGA-TT-G-TCGT--AGCTTT--CGTT----TTTTAGTTTCA--AAAAATA-TTTT-GAA-TTG-ATTTGTGGTAT-TGCG--ATG-TT-TT---------------------------------------AACCAGATATA-G-AA-AAACT--T-------TACGTA-----------T-A--------GTAATGTAT-GGAAAGAC-GGTATTTTC-C-G--A-A--TTA-TAGC---------A-ATAG--------CAAGGTT--ACAATA-AAAACGGGGTACTTAAAA-TGCAG-ATTGTTCTA--CGGACCCCAAGAG-CAATTCAT-CGTG--TTTGCGCA-TAAACAT-AAGACAATGTACTG-AAA---AA---GACCAA-TACTTCGC-AAA-TTCTGT--G---TA-TTCATT--TGCGGTT--ATTTG-CGTAAGGGGCG-CT-ACGCCAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TCAGACCTAAAACCAGTGCTACTACACCTCAGAAACGGAACGAACCAGTATACCGAGCAGAAACGAACCGTAACACATACAAGAGAGAACCGTACAGGCAAGAAAGGCAGAGAACCTACCGTAGAAAGAAAGACGAACACGTACCGTGCAAAAGAAGAACGATAACCCCGAAACCTCATAAAACATACATAAATATATGCAACACCAGCCCTCAAAGCGTCCGAACCGAACACGTACCGTGCAGTTAGCTAATAAGTAAGAACAACATTATAGTGATATCTATCATAATATTTTCACTGATTTATTTACTCTCGAATGGAGCCCGTAAAGGAGGACGTAATACTGATGAAGATAACACCATATGTGAGAGGATTTAATTCA
Unaligned ( gi|26 ): AAGAAGCATTCCGAACAATGTGTATAAGGAAGA
Alignments
lowQualScore : 1111 11 11 1111111 11 111111 1 1 1 22222 11111 111111 4444444444444 1111 111 111 3333333333 2222222222222222 5555555555555555555555 111111111 11111111 111111
lowQualScore : 4444 11 8 88 0 8 8 8 1 6 99 6 22 0 4 8888888 5 33 5 5 0 5 222222 5 66 0 0 5 5 5 3 5 0 5 1 5 0 5 11111 5 5 11111 333333 66 4 3333333333333 4 2222 9999 4 4 777 4 4 4 4 0 55 111 111 4 4 8888 4 4 4 55 66 6666666666 1 99 77 5 7 3 666 3 555 3 3 555 3 2222222222222222 3 77777 2 3 3 3 44 55 0 1 9999999999999999999999 2 5 1 2 2 2 2 77 2 111111111 2 0 00000000 2 5 0 8 2 1 33 3 77 2 2 33 444 33 0 2 1 6 33333 222222 2 33 2 33 2 2 2 2
lowQualScore : .... .. . .. . . . . . . .. . .. . . ....... . .. . . . . ...... . .. . . . . . . . . . . . . . ..... . . ..... ...... .. . ............. . .... .... . . ... . . . . . .. ... ... . . .... . . . .. .. .......... . .. .. . . . ... . ... . . ... . ................ . ..... . . . . .. .. . . ...................... . . . . . . . .. . ......... . . ........ . . . . . . .. . .. . . .. ... .. . . . . ..... ...... . .. . .. . . . .
lowQualScore : 8888 88 0 88 8 0 0 0 4 7 22 7 99 3 0 6666666 7 66 7 7 7 7 888888 0 99 0 0 0 0 0 4 0 4 0 0 0 0 0 66666 0 0 11111 222222 22 4 0000000000000 4 7777 4444 4 0 888 4 4 0 0 7 55 000 000 0 0 5555 0 0 0 55 11 7777777777 9 55 44 6 3 6 444 3 000 3 3 888 3 1111111111111111 3 55555 4 3 3 3 22 33 8 4 0000000000000000000000 9 7 9 9 9 9 9 99 9 444444444 9 8 44444444 7 3 7 5 9 9 99 1 99 9 7 00 777 77 9 7 1 4 99999 222222 7 77 7 77 7 7 7 7
consensus : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACCATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TAC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATTT-CNGTACG-AA-TAT-AT-N---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-TGTTCATCTCAT-TT--------TT--AA-ATAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTT---AA-TG-CCG----TAA-TT-G-TCGT--TGCTTT--TATTG-T-TTTTGTTTTCA--AAAAAGA-TTTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AA-AAAAG--TATG-TAGTACGAAAATTGGT----T-A-C------GTAATGTAT-GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAAAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATACACTA-AAA---AAA--GATCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAGGGGCG-CT-ACGCCAC
Reference ( family-101 ) : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACCATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TAC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATTT-CNGTACG-AA-TAT-AT-N---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-TGTTCATCTCAT-TT--------TT--AA-ATAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTT---AA-TG-CCG----TAA-TT-G-TCGT--TGCTTT--TATTG-T-TTTTGTTTTCA--AAAAAGA-TTTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AA-AAAAG--TATG-TAGTACGAAAATTGGT----T-A-C------GTAATGTAT-GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAAAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATACACTA-AAA---AAA--GATCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAGGGGCG-CT-ACGCCAC
gi|1 : AAACT---GATGAAGTTTAG-C-CATTG-TGATTTTA-TTTCA-AATTTGAACTATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------GGAA--TGAC-AATTACAGACAAAC-AGGCAGTATATAA-TAC-ACTTGCAGAA-ATTCA-T-G-GCGTTTCCAGAATTT-CTGTACA-AA-TAT-AT-T---AAACT-CAAA-----ATGAGTT-A-T-AAAAGC-GGTTCATCTCAT-TT--------TT--AATACAA--TTATTTT-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTT---TTTT---AA-TG-CCG----TAA-TT-G-TCGTAATGCTTT--TA---------TGTTTTCAC-AAAAAGA--TTTTAAA-TTGTTTTTGT---A--TGA---ATGTTT-CTT---GC-GTAACCATGTTAACGTCTT-GTAAACTC-A--AATTAGAGGTA-G-AA-AAAAGTTTATG-TAGAACGAAAATT----------------------TGTAT-GGAAAGACGGGTGTTTAC-CGGG-A-A--TTA-TGGC---------AGATAG--------CAAGGTTT-GCGAGGAAAAATTAAGTACTTA
gi|10 : accttcataaaacgttctcaaataaattatgccaaaccacgccctcaaaggttccgaaaaaccgaaccggtaccgtgcagtatggcactaatttaaggtaatatttacattgtaggtaatctgtacatgtacaaatgtaatcttcatttatttctctcgatgggaacccgtaaagcgaggacgtGTA-AAC---G-A-GGGA-CTGA-TTTCCTTT--TGTT---TTTG---AA-TA-TCAACACCAA-T--A-TTGT--TTTTTC--TATTA-TGTTTTGTTTTCA--AGAAAGA-TTTTTAA--TTG-CTTTG-------------AT---------------------------------------CTCAATAAATCAGATGTA-G-AA-AAAAG--CATG-TATTACGGAAATTGGT----T-AAC------GTAAAGTAT-GGAAAGAC-GGCATTTTC-C-GG-ACA--TTAATAGCTACATTTTGA-ACAGTCTTATTGCAAGGTTT-ACGATG-AAAATTAGATATTTAAAAATGCAG-ATTATTTTA--TGGTGCCCAAGAGGCAATTCGA-TGTGCATATACGTA-CAAACAT-AAAACAATATACTA-GAA---AAA--GACTTA-TGCTTTGC-AAAATTCTGT--G---TA-TTCAT-------------TT-G-CGTAAGGGGCG-CT-ACGCCA
gi|11 : -TTG-TTTTGT---AT-TGAA--ATG-GT-CTT---GC-G----------------TT-GTAAACTGAA--ATTTAGAGATA-G-AA-AAAAG--TATG--AGTACGAAAATTGGT----T-AAC------GTAATG----GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTAT-ACGATG-AAAATGGAGTACTTAAAAATGCAG-ATTACTCTA--TGGAGTCCAAGAGGCAATTCGA-TATG--TT-ATGTA-CAAACAT-AAGACAATGC--------------------TA-TGCTTTGC-AAAATTATGT--G---TA-TTCATT--TGCG-TT--ATT-G-AGCAAGGGGCG-CT-ACGCCAC
gi|12 : AGAGGTA-G-AA-AAATG--TATG-TAGTACAAAAATTGGT----TTA-T------GTAATGTAT-GGAAAGAC-GGTTTTT-C-C-GG-A-AAATTA--------------A-ATAG--------TAAGGTTT-ACGATG-AAAACTGAGTACTTGAAAATGCAG-ATTA-TCTAATTGGAGTCCAAGAGGCAATTCGG-TGTA--TTTACGTA-CTAACATAAAGACAATGCACTT-AAA---AAA--GATCTA-TGTTTAGCAAAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-GCCGCAAGGGGTG-CT-ACGCCAC
gi|13 : AT-GGAAAGTC-GGTATTAACGC-GA-A-A--TTA-TGGC---------A-A--------------AGTTT-ACGAGG-A---TCCGGAGTTTAAA---------------TA--TG-AGTCCAAGAGGCAATTC---------------TA-CAAAC-T-AAGAAAATACACT----A---AAA--GATGTA-TGCTTTGC--AAATTCTGT--G---TA-TTCATT--TGCA-AT--ATT-G-CGTAAGGGGCG-CT-ACG
gi|14 : TTACGTA-TAAACGT-AAGACAATATATTAGAAA---AAA--TACCTA-TGCTTCGC-AACATTATGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAGGGGTG-CT-g
gi|15 : acaatgcagcacaatgcgaggcaatttccttcaaacgctcttgattgaaccaaaAAAGTTT-TCGATG-AATATTGGGTACTTGAAA-TACAA-ATCATTCTA--CGGAACCCAAGCGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATATATTA-CAA---AAA--GACCTA-TGCTTTGG-AA-------------------CATT--TGTG-TT--ATT-G-CGTAAGGTGCG-CT-ACGTCACttaaacccgattaa
gi|16 : T-TGAC--ATG-AT-TTT---GC-A----------------TT-ATAAACC---------AGATGTA-G-AA-AAA----------------------------------------GTAATGGAT-G-AAAGAC-GGCATTTTC-C-GG-A-----TA-TGTC-----------------------------TT-CCGATG-AAATTTGGGTACTTAAAA-TGCTG-AATATTCTA--TGGACCCCAAGAGGCAATTCGA-
gi|17 : C-CA--A-CTTTAA----AATATGGACA-------G-AA--T-AC-GAATACGAACAAAC-AGGCAGGC----A-TAC-ACT--CACAA-ATTTA-T-G-GTGGTTCTA-A-TTT-CGGTACA-AA-TAT-AT-A---AA-CT-AAAA-----AC-----------------TGTTCATCTCAT-TT--------T----A-ATAA--TT----T-TTGTA-C
gi|18 : ATGCAGGATTATTCTA--TG-AGTT-AAGAGGCAATTCGA-TGTG--TTTACATA-CAAACAT-AAGACAATACACTA-AAA---AAAATGATCTA-T------------TTCTGT--ATT-TATTTCATT--TGCG-CA--ATT-G-CG-AA--GGCG-CT-ACGCCAC
gi|19 : -ATTATT-TA--TGAGATTCAAGAGGCAATTCGACTGTG--TTTAC-TA-CAAACAT-AAAACAATACACTA-AAA---AAA--AA---A-T-CTT------AATTCTGT--ATT-TA-TTTATTACTGCG-CT--ATT-G-CGTAAGGGGCC-GT-ACGCCA
gi|2 : AAACT---GATGAAGTTTA--C-CATTG-TGACTTTA-TT-CA-AATTTGAACAATCCAT-CGCGA-CTTTAAGTAAACTACAGACAAGTCACTG-AACCT-AC-AATTACGGACAAAC-AAGCAG-C----A-TAC-ACT--CA-AA-ATTTA-TGG-GCGTTT-CA-AATTT-CTGTACG-AA-TATAATAA---AA-CT-GAAA-----ACGAGTTCA-T-AAAAGCTTGTTC--CTCAT-TTTAATACAATT--AA-AT----TT----T-TTGTA-CAC---G-A-GGGA-CTGC-TCTCGCTG--TGTAT--TTTT---AA-TG-CCG----TAACCT-GTTCGT--TGCTTT--TA--------TTGTTTTCA--AAAAAGA-TTTTTAAATTTG-TTTTGT---AT-TGAC--ATG-TT-CTTTTAGC-G----------------TT-GTAAACTC-A--AATTAGAGGAA-G-AA-AAAAG--TATG-TAGAACGAAAATT----------------------TGTAT-GGAAAGAC-GGTATTTAC-C-GGAA-A--GAA-TGGC---------A-AT-G--------CAAGGTTTAACGA-G-AAAATTAG
gi|20 : caataaacgttctttccaaaaataaaattatgcaaaccacggccctcaaagcgttccgaaaccgaacgtacgtgcatatgcctcaatacggtaaatactacatttgtagtaatcttacatgttcttcatttattttctctcgatggagcccgttaaaggaggacgtCAG-CTTATTCTA--TGGAGTTCAAGAGGCA-TTCGA--GTG--TTTACATAACAAACAT-AAGACAATACACTA-AAAAACAAA--GATCT--------------ATTCTGT--T---TA-TTCATT--TGCG-CT--ATT-G-CGTAAGGGGCG-CTAACGCCt
gi|21 : TTACGTA-CAAACAT-ACGACAATATACTA-AAA---AAA--GATTCA-AGCTTCGC-ACATTTGCGTTGG---CA---CATT--TGCG-TT--GTT-G-CGCAAGGGGTG-CT-ACGCC
gi|22 : taAAG--TATG-TAGTACGAAAATTGG----------------------------AAAGAC-GGCATTTAC-C-GG-A-A--TTA--GGC---------T-ATA----------------------TG-GCAATAG----C----AAGTGCAG-ATTATTCTA--AGGAGTCCAAAATGCAA
gi|23 : AAACAT-AAGACAATACACTA-AAA---AAA--GATCT--------------ATTCTGT--ATTTTA-TTCA-T--TGCG-CT--ATT-G-CGTAA-GGGCA-CT-ACGCCAC
gi|24 : A--AAAAAGA-TTTT-AAA-TTG-TTTTAT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACT
gi|25 : GGA-CTGA-TCTCGC-G--TGTA---TTCT---AA-TG-CCG----TGA-TG-G-TCTT--TGCTTt
gi|3 : AAAC----GATGAAGTTTAA-CGCATTGGTG-CTTTAATT-CACAATTTGAACCATCCAC-CG--AGCTTTAA-CACAATA-AGACA-------G-AAA-T-ACCAATTAGCGACAAACCAGGCTGGC----A--ACTACT--CA-A---TTTA-T-GCGCGGTTCCA-AATTTTCTGTACG-AAGTAT-AT-A---AA-CT-GAAA-----ACGAGTT-ACT-AAAAGC--GTTCATCTCAT-TT--------ATACAA-ATTATTTT----T-TTGTAGCAC---G-A-GGGA-CTGA-T-TCGCTG--TGTA---TTTTA--AA-TG-CCG----TAA-TTCG-TCGT--TGC-TT--TA---------TGTTTTTAACAAAAAGA--TTTTAAA--TG-TTTTGT---AT-TGACTTATG-TT-CTT----C-G----------------TT-GTAAACTCAT--AATTAGAGTAA-GAAA-AAAAG--TATGTTAGAAC-AAAATT----------------------TGTATAGGAAAGAC--GTATTTAC-C-GG-A-AATCTA-TGGC---------A-A-AG--------CAAGGTTT-ACGATG-AAAA
gi|4 : cacctcattaaataacgttctcaaataaattattactgcaaaccaacccctcaaagcggcttccgacgcaaaccgtaccgctgcagattgcctaactaaggtaataatctacatttgtagtaattcttacatgttctcattatttctctcgcatgggagcccattaaagaggtacgctAAACTTTTGATCAAGTTTTA-C-TATTG-TGACTTTG-TT-CA-AATTTGAACCATCCGC-CG--A-CTTTAAATAAGGTATAGACA-------G-AA--T-AC-AATTACGGACAGAG-AGACAGGT----A-TAC-ACT--CA-AA-ATCTA-T-G-GCATTTCGA-GATTT-CGGTTTG-AA-TAA-AT-T---AC-CG-GAAA-----ACGAGT----T-CAAAGC-TGTTTATCTTATATT--------TTA-AA-ATAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TTTCACTG--TGTA---TTTT---AA-TG-CCG----TGA-TT-G-TCGT--TGCTTT--TATTGTT-TTTTGTTTTCA--AAAAAGATTTTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AACCAGAGGTA-G-AA-AAAAG--TGTG-TAGTTCTAAAATTGGT----TAA-C------GCAATGTAT-GTAAAGGC-GGTGTTTTC-C-GG-A-A--TCA-TGGC---------A-ATAG--------CAAGGTTT-ATGATG-AAAATTGGGTACTTAGAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TATATGTA-CAAACAT-ATGACACTATACTT-GGA---AAA--GACCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TTGAAT------TAAGGGGCG-CT-ACGCCACagtt
gi|5 : AAACT---GATGAAGTTTAAAC-CATTG--GACTTTA-TT-CA-AATTTGAACTATCCACGCG--A-CTTTAAG--AATTACAGACA-------G-AA--T-AC-AAT-A-GGACAAAC-AGGCAGGC----AATAC-ACA--TA-AACATTTAAT-G-GCGTTTCTA-ATTTC-CTGTACGGAA-TAT-AT-TTAAAA-CT-GAAA-----ACGAGTT-A-TTAAAAGC-TGTTCATCC-------------------A-AT----TT----T-TTGTA-CACAACG-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTTTTTAA-TGGTCG----TAA-TT-G-TCGT---GCTTT--TATTG-T-TTT------CA--AAAAAGA-ATTTTAAAATTG-TTTTGT---AT-TGAC--ATG-TTTCTT---GCCG----------------TTTGTAAACTCAA--A-TCAGAGGTAAG-AA-AAAAG--TATG-TAGAACAAAAATT--T----T--------------TGTAT-GGAAAGAC-GCTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGGTT-ACGATG-AAAAt
gi|6 : cctcataaaacacgttctcaaataaattatgcaaaccacgccctcaaagcgttcccgaaccgagccgtaccggtgcagtatgcctaataaggtaatactacatttgtagtaatttacatgtatcttatttattttctctgaatgggccgttaaggagcacgtGGCAGGC------TAT-ATT--CA-AATAGCTA-T-G-GTGTTTC-A-AATTT-CGG-ACG-AAATAT-AT-TTA-AA-CTTGAAATTAAAACGAGTT-A-T-AAA-GC-TGTTCATCTCAA-TT--------T----A-ATAA--GT----TGTTGTG-CAC---A-ACGGGAGCTGACTCTCATTGAATGTAATATTTT---AAATG-CCG----TGA-TT-G-TCGT--TGCTTTGATATTA-T-TTT-GAGATAA--TAAAAGA-TT---------------AT---ATATGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AACAAAAG--TATG-TAGTACAAAAATTGGTGAAAT-A-CGTTACGGTAATGTAT-GGAAAGACTAGTATTTAC-C-GG-A-A--T---TGGC---------A-ATAG--------CAAG---T-A--ATGCAAGATT-------------------ATTA-TCTA--TGGAGT-CAAGA-GCAAATCGA-T-TGA-TTTACGTA-CAAAAAT-AAGACAATATACTA-AAA---AAA--GATCTATTGCTTTGC-AAATTCCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAAGGGCGCCT-ACGCCaatt
gi|7 : caggTAAAATATAAACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TGC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATGT-CGGTACG-AA-TAT-AT-A---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-GGTTCATCTCAT-TT--------T----A-ATAA--TT----T-TTGTA-CAC---G-A-GGGA---------------------------------TG-CCA----TAA-TT-G-TCGT--TGCT-----ATTG----------------------A-TTT--AAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAATTTAA--ATTTAGAGGTA-A-AA-AAAAG--TATG--AGTACGAAAATTGGT----CAA-C------GTAATGTAT-GGGAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGAGCACTTAAAAATGCAG-ATTACTCTA--TGGAGTCCAAGAGGCAATTCGA-TATG---TTATGTA-CAAACAT-AAGACAACGTACTA-AAT---AAA--GATCTA-TGCTTTGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-AGTAAGGGGCG-CT-ACGCCACca
gi|8 : AA-----ACGAGT------AAAAGC-TGTTCATCTCAT-TT--------T----A-ATA---TT----T-TAGTT-CAA---GGA-GGAA-CTGA-TCTCGCTG--TGTA---TATC---AA-TG-CCG----TGA-TT-G-TCGT--AGCTTT--CGTT----TTTTAGTTTCA--AAAAATA-TTTT-GAA-TTG-ATTTGTGGTAT-TGCG--ATG-TT-TT---------------------------------------AACCAGATATA-G-AA-AAACT--T-------TACGTA-----------T-A--------GTAATGTAT-GGAAAGAC-GGTATTTTC-C-G--A-A--TTA-TAGC---------A-ATAG--------CAAGGTT--ACAATA-AAAACGGGGTACTTAAAA-TGCAG-ATTGTTCTA--CGGACCCCAAGAG-CAATTCAT-CGTG--TTTGCGCA-TAAACAT-AAGACAATGTACTG-AAA---AA---GACCAA-TACTTCGC-AAA-TTCTGT--G---TA-TTCATT--TGCGGTT--ATTTG-CGTAAGGGGCG-CT-ACGCCAC
blockSeqs : TTTT AA G GT A . C A G CG G GT T AGTCACT . CC . C C AA T . C C A G C T . T G G G A TTAA . T TTAAA TCAT TT A TAATACAATTA . TATT . G G AAC G C G C AA ATA TTT A G ACAC C C T . GA TTATGTTTT T AC TT T T . GGT A CTT . T TTA C . T CAATA A A A C . TT G GGTGAAATACGTTACGGTAA A T T G . A C AA A TACATTTTG . TCTTATTG A C A G C AT C A A A AG AAC AT T G T AAAAA ATTT T AC G GA T C C A
blockSeqs : T A . T . . . C . . . AT C . . A . . . A . . . T . . . C . . T . A . TTA . . . TACT T . ATACA . AA . . . . . . . . . T A . . . . . . . . TTGTTTTTT T . T T A . . . A . . . . . . GAA T . . . . T G GGTTAACGTAA . . A . . . . AT . . . . . . A . T . . . . . T . . . G A AAAA ATT . . . . . . . .
blockSeqs : T A . T . . . C . . . C T . . . . . . A . . . . . . . C . . T . . . AA . . . TATT T . TTAA . AA . . . . . . . . . . . . . . . . . . . TTGTTTT T . T T . . . . C . . . . . . CAT A . . . . T A GGTTAACGTAA . . A . . . . . . . . . . . A . T . . . . . A . . . G T AACA ATT . . . . . . . .
blockSeqs : . . . . . . . T . . . G C . . . . . . A . . . . . . . G . . G . . . A . . . TAT T . T . AA . . . . . . . . . . . . . . . . . . . TTATTTT T . T T . . . . C . . . . . . CAA A . . . . T G GGTTTATGTAA . . T . . . . . . . . . . . G . T . . . . . A . . . G C ACAT TGG . . . . . . . .
blockSeqs : . . . . T . . . . . . A . . . . . . . T . . T . . . A . . . TAT T . T . AA . . . . . . . . . . . . . . . . . . . TTTTTT A . A T . . . . C . . . . . . CAA A . . . . T G GGTTAACGCAA . . A . . . . . . . . . . . A . T . . . . . A . . . G T AAAA G . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . C . . G . . . T . . . T G . T . A . . . . . . . . . . . . . . . . . . . TTG G . T . . . . . C . . . . . . CAA A . . . . T T GGTCAACGTAA . . A . . . . . . . . . . . A . T . . . . . A . . . G C AAAT G . . . . . . . .
blockSeqs : . . . . . . . . . . . G . . . A . . . . T . T . . . . . . . . . . . . . . . . . . . . . TT . . T . . . . . C . . . . . . TAA T . . . . T A TAGTAA . . A . . . . . . . . . . . . . T . . . . . A . . . G C AAAA G . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . T . . T . . . . . C . . . . . . CA A . . . . T A GTAA . . T . . . . . . . . . . . . . T . . . . . A . . . G T AAA G . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . G GG . . A . . . . . . . . . . . . . C . . . . . T . . . G T AAA T . . . . . . . .
blockSeqs : . . . . G . . . . . . . . . . . . . G TT . . A . . . . . . . . . . . . . T . . . . . A . . . A C AA G . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . A . . . . . AA G . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . . . . . G . . . . . A G . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . A G . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqCons : A***** ** TAT*** T************ **** ** TTGTTTT*** ** T* C** **************** CAA** ** GGTTAACGTAA*********** **
originalCons : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACCATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TAC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATTT-CNGTACG-AA-TAT-AT-N---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-TGTTCATCTCAT-TT--------TT--AA-ATAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTT---AA-TG-CCG----TAA-TT-G-TCGT--TGCTTT--TATTG-T-TTTTGTTTTCA--AAAAAGA-TTTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AA-AAAAG--TATG-TAGTACGAAAATTGGT----T-A-C------GTAATGTAT-GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAAAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATACACTA-AAA---AAA--GATCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAGGGGCG-CT-ACGCCAC
finalCons : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACCATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGCA-----TAC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATTT-CNGTACG-AA-TAT-AT-N---AA-CT-GAAA-----ACGAGTTAT---AAAAGC-TGTTCATCTCAT-TTT------------A-ATAA--TT----T-TTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTT---AA-TG-CCG----TAA-TT-G-TCGT--TGCTTT--TATTGTTTT---GTTTTCA--AAAAAGAT-TTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AA-AAAAG--TATG-TAGTACGAAAATTGGTTAACGTAA-----------TGTAT-GGAAAGAC-GGTATTTAC-C-GG-A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAAAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATACACTA-AAA---AAA--GATCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAGGGGCG-CT-ACGCCAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TCAGACCTAAAACCAGTGCTACTACACCTCAGAAACGGAACGAACCAGTATACCGAGCAGAAACGAACCGTAACACATACAAGAGAGAACCGTACAGGCAAGAAAGGCAGAGAACCTACCGTAGAAAGAAAGACGAACACGTACCGTGCAAAAGAAGAACGATAACCCCGAAACCTCATAAAACATACATAAATATATGCAACACCAGCCCTCAAAGCGTCCGAACCGAACACGTACCGTGCAGTTAGCTAATAAGTAAGAACAACATTATAGTGATATCTATCATAATATTTTCACTGATTTATTTACTCTCGAATGGAGCCCGTAAAGGAGGACGTAATACTGATGAAGATAACACCATATGTGAGAGGATTTAATTCA
Unaligned ( gi|26 ): AAGAAGCATTCCGAACAATGTGTATAAGGAAGA
Alignments
lowQualScore : 1111 11 11 1111111 11 111111 1 1 1 22222 11111 11111 111 3333333333333 111 111 2222222222222 2222222222222222 55555555555555555555 111111111 11111111 111111
lowQualScore : 4444 11 8 88 0 8 8 8 1 6 99 6 22 0 4 8888888 5 33 5 5 0 5 222222 5 66 0 0 5 5 5 3 5 0 5 1 5 0 5 11111 5 5 11111 44444 66 66 4 222 66 5555555555555 4 4 4 777 4 4 4 4 0 55 111 111 4 4 8888 4 4 4 55 66 5555555555555 99 3 99 7 3 666 3 555 3 3 555 3 2222222222222222 3 77777 2 3 3 3 44 55 0 1 00000000000000000000 2 5 0 2 2 66 2 33 2 111111111 2 0 00000000 2 5 0 8 2 1 33 3 77 2 2 33 444 33 0 2 1 6 33333 222222 2 33 2 33 2 2 2 2
lowQualScore : .... .. . .. . . . . . . .. . .. . . ....... . .. . . . . ...... . .. . . . . . . . . . . . . . ..... . . ..... ..... .. .. . ... .. ............. . . . ... . . . . . .. ... ... . . .... . . . .. .. ............. .. . .. . . ... . ... . . ... . ................ . ..... . . . . .. .. . . .................... . . . . . .. . .. . ......... . . ........ . . . . . . .. . .. . . .. ... .. . . . . ..... ...... . .. . .. . . . .
lowQualScore : 8888 88 0 88 8 0 0 0 4 7 22 7 99 3 0 6666666 7 66 7 7 7 7 888888 0 99 0 0 0 0 0 4 0 4 0 0 0 0 0 66666 0 0 11111 11111 22 11 4 222 11 2222222222222 4 4 0 888 4 4 0 0 7 55 000 000 0 0 5555 0 0 0 55 11 0000000000000 55 4 66 3 6 444 3 000 3 3 888 3 1111111111111111 3 55555 4 3 3 3 22 33 8 4 33333333333333333333 9 7 3 9 9 88 9 99 9 444444444 9 8 44444444 7 3 7 5 9 9 99 1 99 9 7 00 777 77 9 7 1 4 99999 222222 7 77 7 77 7 7 7 7
consensus : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACCATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TAC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATTT-CNGTACG-AA-TAT-AT-N---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-TGTTCATCTCAT--TT-T---AA--TA-----A-------TTT-T-TGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTT---AA-TG-CCG----TAA-TT-G-TCGT--TGCTTT--TATT--GTTTT--GTTTTCA--AAAAAGATTTT-TAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AA-AAAAG--TATG-TAGTACGAAAATTGGT----TA----AC-GTAATGTAT-GGAAAGAC-GGTATTTAC-C-GG--A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAAAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATACACTA-AAA---AAA--GATCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAGGGGCG-CT-ACGCCAC
Reference ( family-101 ) : AAACT---GATGAAGTTTAA-C-CATTG-TGACTTTA-TT-CA-AATTTGAACCATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TAC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATTT-CNGTACG-AA-TAT-AT-N---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-TGTTCATCTCAT--TT-T---AA--TA-----A-------TTT-T-TGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTT---AA-TG-CCG----TAA-TT-G-TCGT--TGCTTT--TATT--GTTTT--GTTTTCA--AAAAAGATTTT-TAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AA-AAAAG--TATG-TAGTACGAAAATTGGT----TA----AC-GTAATGTAT-GGAAAGAC-GGTATTTAC-C-GG--A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGGGTACTTAAAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATACACTA-AAA---AAA--GATCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAGGGGCG-CT-ACGCCAC
gi|1 : AAACT---GATGAAGTTTAG-C-CATTG-TGATTTTA-TTTCA-AATTTGAACTATCCAC-CG--A-CTTTAAGTAAAATACAGACA-------GGAA--TGAC-AATTACAGACAAAC-AGGCAGTATATAA-TAC-ACTTGCAGAA-ATTCA-T-G-GCGTTTCCAGAATTT-CTGTACA-AA-TAT-AT-T---AAACT-CAAA-----ATGAGTT-A-T-AAAAGC-GGTTCATCTCAT--TT-TT--AA--TACAATTA-------TTT-TTTGTA-CAC---G-A-GGGA-CTGA-TCTCGCTG--TGTT---TTTT---AA-TG-CCG----TAA-TT-G-TCGTAATGCTTT--TA--------T--GTTTTCAC-AAAAAGA-TTT-TAAA-TTGTTTTTGT---A--TGA---ATGTTT-CTT---GC-GTAACCATGTTAACGTCTT-GTAAACTC-A--AATTAGAGGTA-G-AA-AAAAGTTTATG-TAGAACGAAAATT--------------------TGTAT-GGAAAGACGGGTGTTTAC-CGGG--A-A--TTA-TGGC---------AGATAG--------CAAGGTTT-GCGAGGAAAAATTAAGTACTTA
gi|10 : accttcataaaacgttctcaaataaattatgccaaaccacgccctcaaaggttccgaaaaaccgaaccggtaccgtgcagtatggcactaatttaaggtaatatttacattgtaggtaatctgtacatgtacaaatgtaatcttcatttatttctctcgatgggaacccgtaaagcgaggacgtGTA-AAC---G-A-GGGA-CTGA-TTTCCTTT--TGTT---TTTG---AA-TA-TCAACACCAA-T--A-TTGT--TTTTTC--TATTATGTTTT--GTTTTCA--AGAAAGATTTT-TAA--TTG-CTTTG-------------AT---------------------------------------CTCAATAAATCAGATGTA-G-AA-AAAAG--CATG-TATTACGGAAATTGGT----TA----AC-GTAAAGTAT-GGAAAGAC-GGCATTTTC-C-GG--ACA--TTAATAGCTACATTTTGA-ACAGTCTTATTGCAAGGTTT-ACGATG-AAAATTAGATATTTAAAAATGCAG-ATTATTTTA--TGGTGCCCAAGAGGCAATTCGA-TGTGCATATACGTA-CAAACAT-AAAACAATATACTA-GAA---AAA--GACTTA-TGCTTTGC-AAAATTCTGT--G---TA-TTCAT-------------TT-G-CGTAAGGGGCG-CT-ACGCCA
gi|11 : -TTG-TTTTGT---AT-TGAA--ATG-GT-CTT---GC-G----------------TT-GTAAACTGAA--ATTTAGAGATA-G-AA-AAAAG--TATG--AGTACGAAAATTGGT----TA----AC-GTAATG----GGAAAGAC-GGTATTTAC-C-GG--A-A--TTA-TGGC---------A-ATAG--------CAAGGTAT-ACGATG-AAAATGGAGTACTTAAAAATGCAG-ATTACTCTA--TGGAGTCCAAGAGGCAATTCGA-TATG--TT-ATGTA-CAAACAT-AAGACAATGC--------------------TA-TGCTTTGC-AAAATTATGT--G---TA-TTCATT--TGCG-TT--ATT-G-AGCAAGGGGCG-CT-ACGCCAC
gi|12 : AGAGGTA-G-AA-AAATG--TATG-TAGTACAAAAATTGGT----TT----AT-GTAATGTAT-GGAAAGAC-GGT-TTTTC-C-GGAAA-A--TTA--------------A-ATAG--------TAAGGTTT-ACGATG-AAAACTGAGTACTTGAAAATGCAG-ATTA-TCTAATTGGAGTCCAAGAGGCAATTCGG-TGTA--TTTACGTA-CTAACATAAAGACAATGCACTT-AAA---AAA--GATCTA-TGTTTAGCAAAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-GCCGCAAGGGGTG-CT-ACGCCAC
gi|13 : AT-GGAAAGTC-GGTATTAACGC-GA--A-A--TTA-TGGC---------A-A--------------AGTTT-ACGAGG-A---TCCGGAGTTTAAA---------------TA--TG-AGTCCAAGAGGCAATTC---------------TA-CAAAC-T-AAGAAAATACACT----A---AAA--GATGTA-TGCTTTGC--AAATTCTGT--G---TA-TTCATT--TGCA-AT--ATT-G-CGTAAGGGGCG-CT-ACG
gi|14 : TTACGTA-TAAACGT-AAGACAATATATTAGAAA---AAA--TACCTA-TGCTTCGC-AACATTATGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAGGGGTG-CT-g
gi|15 : acaatgcagcacaatgcgaggcaatttccttcaaacgctcttgattgaaccaaaAAAGTTT-TCGATG-AATATTGGGTACTTGAAA-TACAA-ATCATTCTA--CGGAACCCAAGCGGCAATTCGA-TGTG--TTTACGTA-CAAACAT-AAGACAATATATTA-CAA---AAA--GACCTA-TGCTTTGG-AA-------------------CATT--TGTG-TT--ATT-G-CGTAAGGTGCG-CT-ACGTCACttaaacccgattaa
gi|16 : T-TGAC--ATG-AT-TTT---GC-A----------------TT-ATAAACC---------AGATGTA-G-AA-AAA--------------------------------------GTAATGGAT-G-AAAGAC-GGCATTTTC-C-GG--A-----TA-TGTC-----------------------------TT-CCGATG-AAATTTGGGTACTTAAAA-TGCTG-AATATTCTA--TGGACCCCAAGAGGCAATTCGA-
gi|17 : C-CA--A-CTTTAA----AATATGGACA-------G-AA--T-AC-GAATACGAACAAAC-AGGCAGGC----A-TAC-ACT--CACAA-ATTTA-T-G-GTGGTTCTA-A-TTT-CGGTACA-AA-TAT-AT-A---AA-CT-AAAA-----AC-----------------TGTTCATCTCAT--TT-T---AA--TA-----A-------TTT-T-TGTA-C
gi|18 : ATGCAGGATTATTCTA--TG-AGTT-AAGAGGCAATTCGA-TGTG--TTTACATA-CAAACAT-AAGACAATACACTA-AAA---AAAATGATCTA-T------------TTCTGT--ATT-TATTTCATT--TGCG-CA--ATT-G-CG-AA--GGCG-CT-ACGCCAC
gi|19 : -ATTATT-TA--TGAGATTCAAGAGGCAATTCGACTGTG--TTTAC-TA-CAAACAT-AAAACAATACACTA-AAA---AAA--AA---A-T-CTT------AATTCTGT--ATT-TA-TTTATTACTGCG-CT--ATT-G-CGTAAGGGGCC-GT-ACGCCA
gi|2 : AAACT---GATGAAGTTTA--C-CATTG-TGACTTTA-TT-CA-AATTTGAACAATCCAT-CGCGA-CTTTAAGTAAACTACAGACAAGTCACTG-AACCT-AC-AATTACGGACAAAC-AAGCAG-C----A-TAC-ACT--CA-AA-ATTTA-TGG-GCGTTT-CA-AATTT-CTGTACG-AA-TATAATAA---AA-CT-GAAA-----ACGAGTTCA-T-AAAAGCTTGTTC--CTCAT--TT-T---AA--TAC----AATTAAATTTT-T-TGTA-CAC---G-A-GGGA-CTGC-TCTCGCTG--TGTAT--TTTT---AA-TG-CCG----TAACCT-GTTCGT--TGCTTT--TA-------TT--GTTTTCA--AAAAAGATTTT-TAAATTTG-TTTTGT---AT-TGAC--ATG-TT-CTTTTAGC-G----------------TT-GTAAACTC-A--AATTAGAGGAA-G-AA-AAAAG--TATG-TAGAACGAAAATT--------------------TGTAT-GGAAAGAC-GGTATTTAC-C-GGA-A-A--GAA-TGGC---------A-AT-G--------CAAGGTTTAACGA-G-AAAATTAG
gi|20 : caataaacgttctttccaaaaataaaattatgcaaaccacggccctcaaagcgttccgaaaccgaacgtacgtgcatatgcctcaatacggtaaatactacatttgtagtaatcttacatgttcttcatttattttctctcgatggagcccgttaaaggaggacgtCAG-CTTATTCTA--TGGAGTTCAAGAGGCA-TTCGA--GTG--TTTACATAACAAACAT-AAGACAATACACTA-AAAAACAAA--GATCT--------------ATTCTGT--T---TA-TTCATT--TGCG-CT--ATT-G-CGTAAGGGGCG-CTAACGCCt
gi|21 : TTACGTA-CAAACAT-ACGACAATATACTA-AAA---AAA--GATTCA-AGCTTCGC-ACATTTGCGTTGG---CA---CATT--TGCG-TT--GTT-G-CGCAAGGGGTG-CT-ACGCC
gi|22 : taAAG--TATG-TAGTACGAAAATTGG--------------------------AAAGAC-GGCATTTAC-C-GG--A-A--TTA--GGC---------T-ATA----------------------TG-GCAATAG----C----AAGTGCAG-ATTATTCTA--AGGAGTCCAAAATGCAA
gi|23 : AAACAT-AAGACAATACACTA-AAA---AAA--GATCT--------------ATTCTGT--ATTTTA-TTCA-T--TGCG-CT--ATT-G-CGTAA-GGGCA-CT-ACGCCAC
gi|24 : A--AAAAAGATTTT--AAA-TTG-TTTTAT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACT
gi|25 : GGA-CTGA-TCTCGC-G--TGTA---TTCT---AA-TG-CCG----TGA-TG-G-TCTT--TGCTTt
gi|3 : AAAC----GATGAAGTTTAA-CGCATTGGTG-CTTTAATT-CACAATTTGAACCATCCAC-CG--AGCTTTAA-CACAATA-AGACA-------G-AAA-T-ACCAATTAGCGACAAACCAGGCTGGC----A--ACTACT--CA-A---TTTA-T-GCGCGGTTCCA-AATTTTCTGTACG-AAGTAT-AT-A---AA-CT-GAAA-----ACGAGTT-ACT-AAAAGC--GTTCATCTCAT--TTATACAAA--TT-----ATT-----TTT-T-TGTAGCAC---G-A-GGGA-CTGA-T-TCGCTG--TGTA---TTTTA--AA-TG-CCG----TAA-TTCG-TCGT--TGC-TT--TA--------T--GTTTTTAACAAAAAGA-TTT-TAAA--TG-TTTTGT---AT-TGACTTATG-TT-CTT----C-G----------------TT-GTAAACTCAT--AATTAGAGTAA-GAAA-AAAAG--TATGTTAGAAC-AAAATT--------------------TGTATAGGAAAGAC--GTATTTAC-C-GG--A-AATCTA-TGGC---------A-A-AG--------CAAGGTTT-ACGATG-AAAA
gi|4 : cacctcattaaataacgttctcaaataaattattactgcaaaccaacccctcaaagcggcttccgacgcaaaccgtaccgctgcagattgcctaactaaggtaataatctacatttgtagtaattcttacatgttctcattatttctctcgcatgggagcccattaaagaggtacgctAAACTTTTGATCAAGTTTTA-C-TATTG-TGACTTTG-TT-CA-AATTTGAACCATCCGC-CG--A-CTTTAAATAAGGTATAGACA-------G-AA--T-AC-AATTACGGACAGAG-AGACAGGT----A-TAC-ACT--CA-AA-ATCTA-T-G-GCATTTCGA-GATTT-CGGTTTG-AA-TAA-AT-T---AC-CG-GAAA-----ACGAGTT-C----AAAGC-TGTTTATCTTATATTT-T---AAAATA-----A-------TTT-T-TGTA-CAC---G-A-GGGA-CTGA-TTTCACTG--TGTA---TTTT---AA-TG-CCG----TGA-TT-G-TCGT--TGCTTT--TATT--GTTTTTTGTTTTCA--AAAAAGATTTTTTAAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AACCAGAGGTA-G-AA-AAAAG--TGTG-TAGTTCTAAAATTGGT----TA----AC-GCAATGTAT-GTAAAGGC-GGTGTTTTC-C-GG--A-A--TCA-TGGC---------A-ATAG--------CAAGGTTT-ATGATG-AAAATTGGGTACTTAGAAATGCAG-ATTATTCTA--TGGAGTCCAAGAGGCAATTCGA-TGTG--TATATGTA-CAAACAT-ATGACACTATACTT-GGA---AAA--GACCTA-TGCTTCGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TTGAAT------TAAGGGGCG-CT-ACGCCACagtt
gi|5 : AAACT---GATGAAGTTTAAAC-CATTG--GACTTTA-TT-CA-AATTTGAACTATCCACGCG--A-CTTTAAG--AATTACAGACA-------G-AA--T-AC-AAT-A-GGACAAAC-AGGCAGGC----AATAC-ACA--TA-AACATTTAAT-G-GCGTTTCTA-ATTTC-CTGTACGGAA-TAT-AT-TTAAAA-CT-GAAA-----ACGAGTT-A-TTAAAAGC-TGTTCATCC------------AA--T--------------TTT-T-TGTA-CACAACG-A-GGGA-CTGA-TCTCGCTG--TGTA---TTTTTTTAA-TGGTCG----TAA-TT-G-TCGT---GCTTT--TATT--GTTTT-------CA--AAAAAGAATTT-TAAAATTG-TTTTGT---AT-TGAC--ATG-TTTCTT---GCCG----------------TTTGTAAACTCAA--A-TCAGAGGTAAG-AA-AAAAG--TATG-TAGAACAAAAATT--T----T------------TGTAT-GGAAAGAC-GCTATTTAC-C-GG--A-A--TTA-TGGC---------A-ATAG--------CAAGGGTT-ACGATG-AAAAt
gi|6 : cctcataaaacacgttctcaaataaattatgcaaaccacgccctcaaagcgttcccgaaccgagccgtaccggtgcagtatgcctaataaggtaatactacatttgtagtaatttacatgtatcttatttattttctctgaatgggccgttaaggagcacgtGGCAGGC------TAT-ATT--CA-AATAGCTA-T-G-GTGTTTC-A-AATTT-CGG-ACG-AAATAT-AT-TTA-AA-CTTGAAATTAAAACGAGTT-A-T-AAA-GC-TGTTCATCTCAA--TT-T---AA--TA-----A-------GTTGT-TGTG-CAC---A-ACGGGAGCTGACTCTCATTGAATGTAATATTTT---AAATG-CCG----TGA-TT-G-TCGT--TGCTTTGATATT--ATTTT--GAGATAA--TAAAAGATT----------------AT---ATATGAC--ATG-TT-CTT---GC-G----------------TT-GTAAACTCAA--AATTAGAGGTA-G-AACAAAAG--TATG-TAGTACAAAAATTGGTGAAATACGTTACGGTAATGTAT-GGAAAGACTAGTATTTAC-C-GG--A-A--T---TGGC---------A-ATAG--------CAAG---T-A--ATGCAAGATT-------------------ATTA-TCTA--TGGAGT-CAAGA-GCAAATCGA-T-TGA-TTTACGTA-CAAAAAT-AAGACAATATACTA-AAA---AAA--GATCTATTGCTTTGC-AAATTCCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-CGTAAAGGGCGCCT-ACGCCaatt
gi|7 : caggTAAAATATAAACA-------G-AA--T-AC-AATTACGGACAAAC-AGGCAGGC----A-TGC-ACT--CA-AA-ATTTA-T-G-GCGTTTCCA-AATGT-CGGTACG-AA-TAT-AT-A---AA-CT-GAAA-----ACGAGTT-A-T-AAAAGC-GGTTCATCTCAT--TT-T---AA--TA-----A-------TTT-T-TGTA-CAC---G-A-GGGA---------------------------------TG-CCA----TAA-TT-G-TCGT--TGCT-----ATT--G---------------------ATTT---AAA-TTG-TTTTGT---AT-TGAC--ATG-TT-CTT---GC-G----------------TT-GTAAATTTAA--ATTTAGAGGTA-A-AA-AAAAG--TATG--AGTACGAAAATTGGT----CA----AC-GTAATGTAT-GGGAAGAC-GGTATTTAC-C-GG--A-A--TTA-TGGC---------A-ATAG--------CAAGGTTT-ACGATG-AAAATTGAGCACTTAAAAATGCAG-ATTACTCTA--TGGAGTCCAAGAGGCAATTCGA-TATG---TTATGTA-CAAACAT-AAGACAACGTACTA-AAT---AAA--GATCTA-TGCTTTGC-AAAATTCTGT--G---TA-TTCATT--TGCG-TT--ATT-G-AGTAAGGGGCG-CT-ACGCCACca
gi|8 : AA-----ACGAGT------AAAAGC-TGTTCATCTCAT--TT-T---AA--TA-------------TTT-T-AGTT-CAA---GGA-GGAA-CTGA-TCTCGCTG--TGTA---TATC---AA-TG-CCG----TGA-TT-G-TCGT--AGCTTT--CGTT---TTTT--AGTTTCA--AAAAATATTTT--GAA-TTG-ATTTGTGGTAT-TGCG--ATG-TT-TT---------------------------------------AACCAGATATA-G-AA-AAACT--T-------TACGTA-----------TA-------GTAATGTAT-GGAAAGAC-GGTATTTTC-C-G---A-A--TTA-TAGC---------A-ATAG--------CAAGGTT--ACAATA-AAAACGGGGTACTTAAAA-TGCAG-ATTGTTCTA--CGGACCCCAAGAG-CAATTCAT-CGTG--TTTGCGCA-TAAACAT-AAGACAATGTACTG-AAA---AA---GACCAA-TACTTCGC-AAA-TTCTGT--G---TA-TTCATT--TGCGGTT--ATTTG-CGTAAGGGGCG-CT-ACGCCAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TCAGACCTAAAACCAGTGCTACTACACCTCAGAAACGGAACGAACCAGTATACCGAGCAGAAACGAACCGTAACACATACAAGAGAGAACCGTACAGGCAAGAAAGGCAGAGAACCTACCGTAGAAAGAAAGACGAACACGTACCGTGCAAAAGAAGAACGATAACCCCGAAACCTCATAAAACATACATAAATATATGCAACACCAGCCCTCAAAGCGTCCGAACCGAACACGTACCGTGCAGTTAGCTAATAAGTAAGAACAACATTATAGTGATATCTATCATAATATTTTCACTGATTTATTTACTCTCGAATGGAGCCCGTAAAGGAGGACGTAATACTGATGAAGATAACACCATATGTGAGAGGATTTAATTCA
Unaligned ( gi|26 ): AAGAAGCATTCCGAACAATGTGTATAAGGAAGA