lowQualScore : 1111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 1111 777777777777777777777777777777 111111 22222 1111 5555555555555555555555555555555555555555555555555555 444444444 00000000000000000000000000000000000000000000000 22 333 11111111 111 11111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 11111111111111111111111111111111111111111111111111111 6666 6666666666666666666666 1111 222 9999999999999999999999999999999999 44444444444444444444444444444444444444444444 1111 1111 22222222222
lowQualScore : 4 6 3 2 33 666 444444444 99999 3 2 3 9999 77 6 77 3 222222222222222222222222222222 4 111111 99999 2222 4 777 55 55 2222222222222222222222222222222222222222222222222222 5 5 5 111111111 3 1 88888888888888888888888888888888888888888888888 0 66 0 77 5 000 55555555 66 000 66666 5 3 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 4 2 00000000000000000000000000000000000000000000000000000 66 5 5 66 3333 888 3333333333333333333333 1111 4 4 55 3 3 222 3 3 99 44 44 44 9999999999999999999999999999999999 555 3 55555555555555555555555555555555555555555555 0000 555 4444 3 3 3 3 44444444444 0
lowQualScore : . . . . .. ... ......... ..... . . . .... .. . .. . .............................. . ...... ..... .... . ... .. .. .................................................... . . . ......... . . ............................................... . .. . .. . ... ........ .. ... ..... . . ............................................................................................... . . . ..................................................... .. . . .. .... ... ...................... .... . . .. . . ... . . .. .. .. .. .................................. ... . ............................................ .... ... .... . . . . ........... .
lowQualScore : 4 7 6 1 88 444 555555555 11111 6 1 6 3333 99 0 99 3 333333333333333333333333333333 0 555555 55555 3333 0 000 55 55 9999999999999999999999999999999999999999999999999999 0 0 0 999999999 3 7 11111111111111111111111111111111111111111111111 1 88 8 99 7 333 11111111 99 000 00000 1 6 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 5 5 55555555555555555555555555555555555555555555555555555 99 0 0 99 1111 888 2222222222222222222222 3333 0 0 55 6 3 222 3 1 33 66 66 66 4444444444444444444444444444444444 444 1 66666666666666666666666666666666666666666666 8888 444 8888 1 8 3 3 55555555555 8
consensus : NTCGA-TCTNTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGA-A-TTTTT--ACAGA--TTATGGGA-GAAAA----GAGG-C----TAGAGTA-GAA-----CGAGATAC-A------ACTCA-N-AATACGCAAAATA-T---AAT--T--TACG---------T--------T-TG-GACCG-------------T----------TTGATAAACC-AAGA-GCC-AT--GAG-CAGACACGCACGCAGGGCTA----------T---T----AAGT--G--G--CT--ATTTTT-----ATCTGAAAACGTCACATGTTT--A-AAANAAA---A----ACATTG--TTT---AGTCTAAAA---GGACATGG-------AA-GGGTTTTCG-TTGGA--ATAATGGTTTATAA-G-TG-CTTA-AA-----TTATAAGAG-GCA-GG-AT---A-------T--TCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAAGGGGTA----TTT--TTATA-GTTTCTACATAACACGT-CGTCTGCTGTCA--T-T-CTAA--ATCACGTG-ATG---TAAAATG------NTCGAG---N-----CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGA-TGATC-TT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---ATTTTA---TC---GA-TACGTATTTTAAATAG-CAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGT
Reference ( gi|2 ) : GTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGA-A-GTTTT--ACGGA--TTATGGGA-GAAAA----TTGG-T----TAGAATA-CACT----CGAGATAC-A------ACTCA-A-AATGTGGAAAATA-T---AAT--T--TACG---------T--------T-TG-----G-------------T----------TTGATAAACC-AAGA-GCC-AC--GAGTCAGACACGTACGCAGGGCTA----------T---T----AAG---G--G--CT--ATTTTTTTTA-ATCTGAAAACGTGTCATGTTT--A-AATTCAA---A----ACATTG--TTT---AGTCTAACA---GAACAT---------AA-GAGTTTTCATTTGGA--GTAATGAGTTATAA-G-TG-CTTA-AAATTCTTTAT------GC------T---A-------T--CCCCAT-TCTTGAAAAACGAGTGTGGATTCCTTAAGGGGGA----TTT--TTATAAGTTTCTACATAACACGTACGTTTGTTGTCA--T-T-CTAA--ATCAC----ATG---TAAAAT-------TTCGAA---A-----CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGA-TGAAT-TT-CATA-AC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---GTTTTA---TC---TA-TACGTATTTTAAATAG-CAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGTC
gi|1 : TCCA-TCTTTACACGCATGCGTACAGATGGT-AAACATTGCA-GCAT---GTC---------GAAGAG-----TG-CAGTAGA-TATACCCATA----TTTTCCACAGA--TTATGGAA-GAAAA----GAGG-T----TAGAATA-GAA-----CGAGATAC-A------ACTC-----ATATACAAAATA-T---AAT--T--TACG---------TGGGATCA-T-TATGACCG-------------T----------ATGATAAACC-AAGA-GCC-AG--G----AGACACGCACGTAGGGCT-----------C---T----AAGTTAGT-G--CC--ATTTTT-----ATCTGAAAAAGTCTCATGTTT--A-AAAAAAA---A----ACATGGGACATGGAAGAGTAAAA---AAACATGGGACGTGGAA-GAGTTTTCG-TTGAA--TTGCTTGACTATAA-GAGG-CAGG-AAA----------------------T---A-------T--TCCCAT-TCTTGAAAAGCTAGTGTG-------TA-------------T--TTA--------TACACAAC----ACGTCTGTTGTCA--T-T-CAAA--ATCACGTA-ATG---TGAAGTG------TCCGAG---T-----CAGC--ATGTG-G-ACA--CT------------GA-T---C-TT-CAAA-GC--GC--ACTT--GAGAGCTAATT----G---------A----------TG---CAATCAAGGTA-TTCAACATACTATGT----AG------T---T-G------GT---------ATTATTTTTTTTTTGATTTTG---TC---TA-TGCGTAGTTTAAATAG-TAT-TTGA-T---------TAAATATGAAAAATGAGCTGTAG
gi|5 : atactttttgacatcccatacaaagagacttccccggcttTCGA-TCTGTACACGCATGAGCACAGAGAGC-AAACATTTAG-GCAT---GTC---------GAAGCA-----TA-CAATGAA-TATACCCAGG-A-TTTTT--ACAGA--TTA-------AAAA----GAGG-C----GAGCGTA-AAA-----CGAGAAAC-A------ACTCA-T-AATACGCAAAATA-T----AT--T--TACG---------TGGGGATCAT-TATGACCG-------------T----------TTGATAAACC-AAGA-GCC-ATGAGAGTCAGACATGCACGCAGGGCTA----------T---T----AAGTA-GGTG--CT--ATTTTT-----ATCTGAAAACGTCACATGTTT--ATAAGAAAA---AAAACACACCA--ATT---AGTCTAAAA---AGACCTTG-------AA-GGGTTTTC
gi|4 : tataaaaaataaaataaacgagtacccgccttTCGAATCT-TACACGCATGCGCACAGAGGGTAAAACATTTCG-GCAT---GTC---------GATGCAACATGTAGCAATGGACTATAACCAGA-A-TTTTT--ACAGAATCTAT-GGA-GAAAA----GAGG-CGCTATAGAA-A---------CGATATACAA------ACTCATA-GATATGCAAAATATT---AAT--TTATACG---------T--------G-TG-----GGA-----------TATTATGACCGTTAATAAACCAAAGAGGCCGATG-GAGTCAGGTACACAGGCA-GGCTAAATAAAAACGT---T----AAGTAAG--GTTCT--ATTTT------ATCCGAAAACGTCAAATGTTTTAA-AAATGAA---A----ACATTG--TTT---AGTCTAAGACTTGGAC--------------GGGTTTTCG--TGGACGAAAATGATTTATAACG-TGTCTTT-AA-----TTATAAGAGCGC------TGGAA-------TAATCCTAT-TCTTGAAAAGC-AGTATGGATTCTTTAAGGGG
gi|8 : caaaccaaaacaaaagcaacacaatttTCGA-CCTGTACACGCATGCGCACAGAGGGT-AACCATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACACCCAGA-A-TATTT--ACAGA--TTATGGGA-GAAAA----GAAG-C----TAGAGTA-GAA-----CGAGCTAC-A------ACTCA-T-AATACGCAAAATA-T---AAT--T--TACG---------T--------taatcatcattctctcttacacagttg
gi|13 : aaaactttctaatggccaatactaaaaaacaaacgagtcaccgccctTCGA-TCTGTACACGCAAGCGCACAGAGGGT-AAACATTTCG-GCAT---GTT---------GATGCA-----TA-CAATGGA-TATACCGAGA-A-TTTTT--ACAGA--TTATGGGA-GAATA----GAGA-C----TAAAGTA-GAA-----CGAGATAC-A------ACTCA-T-AATACGCAAATTA-T---AAT--T--TACG---------TGGGGATCAT-TATGACCG-------------T----------TTGATA-----AAGG-GCC-AT--GAATggggatcattatgactcatgaatggctaaacagtcataatgatccccacgtaaattataatttgtaaattgtat
gi|7 : cgcttcggcctatacaaaacaggggaaaaaaccgagtccccacctTCGA-TCTTTAAACGTATGCGCACACACGAT-AAAC-TTTGGAGCAT---GT----------AAT--------TA-C-----A-TACACCCAGA-A-TTTTC--ACAGAT-TTTTGGGA-GAAAA----GAGG-T----TAGAGTA-GAA-----CGAGACAC-A------ACTT-----ATTTGTAATATA-T---AAT--T--TTCGAAGGGGTCAT--------TATGACC--G-------------T----------TTGATAAACC-AAGA-GAC-A---GA---AGACAAGCACGCAGGGCTA----------TCAAT----AAG---T--G--AT--ATTTTT-----ACCTGACAACGTCACATG-TT--A-AAATCAA---A----GTACTG--gtta
gi|14 : ttgacggcccatgccaaaaataaagttcccgccttTCGA-CCTG-ACACGCATGCGCACAGAGGGT-AA-CATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACA-CCAGATA---TTT--ACAGA--TTATGGGA-GAAAAGAAGCTAG-G----TAGAA-----------CGAGCTAA-C------ACTC--A-TATACGCAAAATA-T---AAT--T--TACG---------T--------ag
gi|25 : ggccaatactaaaaaacaaacgagtcggccctTTGA-TCTTTACACACATGCAAACAGAGGGT-AAACATTTCA-GCAT---ATC---------GATGCA-----GA-CAATCGA-TATATCTAGA-A-TTTAT--ATAGA--TTATGGGA-GAAGA----Tggggatccattatgatccataaatggtaaacagt
gi|20 : ccgtcttTCGG-TCTTTACACGCATAAGCAGAGAAGGT-AAAC--TACA-GCATTTAGTCCAGAGAGAGGAAGCG-----TA-AAATGGA-TAGATCCAGA-A-ATTTG--ACAGA--TTATGCAA-GAAAA----Taaaagat
gi|27 : aattaatacttagccctatgaaatatacattgagactccttTGCACACAAATGGT-AA-CATTTCA-GCAA---GTC---------GATACA-----TA-C----------ACCCATA-ATATTTT--ACAGA--TTTTGGAA-GAAAA----GAGG-C----TAG-ATA-GAGTAGAACGAGATAC-A------ACTCA-T-AATcaag
gi|3 : cT-AAACAAATCA-CCAT---GAC---------GTTGCT-----TA-CCATGGA-TATACTAAGA-A-TTTTT--ACAGA--TCATGAGAGGGGGA------GG-G----TAGAGCA-TAA-----CAAGATGC-A------ATTC-----ATATGGAGAATG-TGGAAATCAT--TATG---------A--------C-C------A-------------T----------TTGATAAAAC-AATA-GCC-AT--G---C-GACAAGTACAGAGGTATA----------T---T----AAG----------TAAATGCTTTTTATATCTGAAAAa
gi|19 : atgtACCCAGG---GTTTTG-ACAAA--TGTTCGAA-GAGA------TGTCT----TAAAGTAGTAC------GAGATAC-ATGTACTACTCA-ATAA---GCAAAATA-T---AAT--T--TACA---------T--------G-GG-----GATCATTATGACTTT----------TTGATAAACC-AAGA-G---AC---------ACACGATCGCAAGGCT-----------T---T----AA-----------T--AAATTTT----ATCTGAAAACatcacactttaaccaccaccccccacccccctctcccaataaacccaatgtaacattccttagtttaaaaggacatgcaaggttttcgctggaataatgattataagtgcttaattgtaggaggcaaggaatattcccattcttgaaaagctaatgtgggccctttaaggggtatttctttttatacatttgtacacaaaccgtcagttgtcattctgaattgcatgatgtaaaatgtcgagtcagattgaaggaactgaatttcgattgatcttcatagcgcagtggatagcaaacgggtccattcaaattgttcaaaatagtctttttgttaacaagtacatgtatcttcaatctgataaaa
gi|9 : -T---AAT--T---ACA---------T--------TATG-----G-------------TCGT-------TCGCTAAACC-AAGA-GCC-AT--GAGACGCGCACGTAGTCAAGGATA----------T---TTAATGAG---T--G--CC--ATTTT----A-A-CTGAAAACGTCACATGTTA--A-AA---AA---C----ACATTG--TTT---AGTCTAAAA---GGACATG--------AA-GGGTTTCCG-TTGGA--ATAAGGATTTATTA-------TTATGAATAATGTGA------GA------C---AAGGGAGGT--TTTCAT-TCTTGACAAGCGAGTGTGGATCCTTTAAAGAGGG----TAT--TTctcat
gi|3 : gcataaaatatgtatcataattatgtT--A-AACCCAATGTA----ACATTC--CTT---AGTTTAAAA---GGACATGC-------AA-G-GTTTTCGCT-GGA--ATAATGA-TTATAA-G-TG-CTTA-A------TTGTAGGAG-GCAAGGAAT---A-------T--TCCCAT-TCTTGAAAAGCTAATGTGGGCCCTTTAAGGGGTATTTCTTT--TTATACATTTGTACACAA-AC---CGTCAGTTGTCA--T-T-CTGA--ATTGCATG-ATG---TAAAAT-------GTCGAG---T-----CAGA--TTGAA-G-GAA--C----TGAATTTCGAT-TGATC-TT-CATA-GC--GC--AGTG--GATAGCAAACG----G---------G----------TC---CATTCAAATTG-TTCAAAA-------T----AG------T---C-----------------------TTTTTG--------TTA---ACAAGTA-CATGTATCTTCAAT-------CTGA-T---------AAAA
gi|12 : atgttaaacaaatcaccatgacgttgcttaccatggatatactaagaatttttacagatcatgagagggggagggtagagcataacaagatgcaattcatatggagaatgtggaaatcattatgaccatttgataaaacaatagccatgcgacaagtacagaggtatattaagtaaatgctttttatatctgaaaaatcacactttaaccaccaccccccacccccctctcccaa--A-AAATAAA---A----ACGTTG--TTT---AGTCTATAA---GGACATGG-------AATGACTTTGC-----GG--GTAATGGTTTATAA-T-TG-CTTA-A------TTATAAGAG-GCAGGGTAT---A-------T--TCCCAT-TCTTGAAAG-CGAGTGTG-------------------------------GTTTCTACATAAC----ACATCTGCTGTCA--T-T-CTAA--ATCACTTG-ATG---TAAAATA------TCCGAG---T-----CAGC--TTGAA-A-AAA--CT-TTTGAATTCCGGA-TGATC-TT-TATA-GC--GC--AATT--GA-------------
gi|11 : ----ACGTTG--TTT---AGTCTATAA---GCACGTGG-------AATGACTTTGC-----GG--GTAATGGTTTATAA-T-TG-CTTA----TTCTAGAG------GCAGGGTAT---A-------T--TCCCATATCTTGAAAG-CGAGTGTG-------------------------------GTTTCTAC-TAACACAT----CTGCTGTCA--TATACTAATAAT-ACTTGAATG---TAAAATAT-----TCCGAA---GT----CAGTCATTGAA-A-AAA--CTCTTTGAATTCC-GA-TGATC-TTGTACA-GC--GC--AATT--Gcacggttatttacaccatttcaaga
gi|16 : at------T---A-------T--TCCCAT-TTGTGAAAAGCGAGTGTCAATTCGTTAAGGGATA----TTT--T-----------------CACGT-------CTATCA--T-T-CTAA--ATCAC----GTGACGTAAAAT-------GT-----------------------A-G-AAA--CT-TTTGAATTCCCGA-TGATC-TG-CATA-GC--AC--AGTT--GA-------------GAGCTAATTAA----------TG---CA-TCAACTTA-TTCAAAA-------T----AGTCGGAAT---C-G------AT---------ATTATGTTcggacggttcatttacaccatttcaaga
gi|6 : ggaAC-TCTTGAAACGCGAGTGTGAATTCTTCAAGAGGTA----TTTTATTATAAATTTCCACATAAC----ATGTCTGTGGTCA--T-T-GTAA--ATCACGTA-ATG---TAAAATGTCCGAGCTCGAG---G-----CAGC--TTGAA-GAAAA--AT-TTTGAACTCCGGA-TGATA-TT-CATA-GT--GCAGAGTT--GAGAGCTAATCAATTG---------A----------TG---TAGTCAAATTG-TTCAAAA-------T----AG------T---C-GGA----ATCAATATTTAATTATTTCTATC---ATTTTA---TC---GA-TATGTATTTTAAATAG-CAC-TTAA-TTGTCAGTTGAAAATATGAAAAATGAGTTGCAGTGT
gi|10 : TATAAGTTTCTACATAACACGT----TTATTGTCA--T-T-CTAA--ATCACGTG-ATG---TAAAAT-------GTTGCATGGAGCCGTCAGC--ATGAA-G-AAA--CT-TTTGAATTCCGGA-TGTTT-TT-CAAA-GC--GC--AGTG--GAGAGAAATTT----G---------A----------TG---CATTGAAATTG-TTCACAA-------T----AG------T---C-G------GT---------AT
gi|17 : aaaaacacatggaagggtttccgcttttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggataCATAA-ACACTCGTTTGATGACAAAT-T-CTAA---TCACGTG-ATG---TAAAAT-------GTCTAA---G-----CAG---TTGAATG-AAAGTTT-TTTGAATTCCGAATTGAATGCT-CATATGT--GC--AGAT--GA-------------G---------AGCTAATTGGTTG---TGTTCAAATTGTTTTAAAA-------T----AG------T---CTG------A-------------------ATC---GTTTTA----C---TACTACAT-TTCTAAcgatat
gi|15 : GC--ATGAA-G-AAA--AT-TTTGAATTCCGAC-TGACC-TT-CAAT-GC--GC--TGTT--GA-------------G---------AGGAAAC----TGAAGTATTCAAATTT-TTTAAAA-------T----AG------T---C-GGCATCGAT---------ATTATTTTTATA---ATTTTG---TC---GA-TACGCATTTTAAATAG-CAC-TTGA-TA--------AAAATGTGAAAAATGAGCTGTAGTt
gi|18 : gtgtaatgtctaagtctTGAA-T-AAA--CC-TTTGAATTC-GGA-TGATC-TT-CAAA-GCTGAT--AGTTCAGA-------------GTAAATTG--A----------TG---CATTCAAATTG-TTCAAGA-------TTATTAG------TTATC-A------AT---------ATCATTTTTATC---ATTTTA---TC---GA-TACATATTTTGAATAG-CAC-TTCATT---------AAAATGTGGAAAATGAGCTGTAGT
gi|22 : c-TTTGAATTCCGGA-TGATC-TG-CATA-GC--GC--AGTT--GATAGCTAATT----G---------A----------TG---CATTACAATTG-TTCACAA-------A----AG------T---C-GGAATCGAT---------ATTATGTTTATC---ACTTTA---TC---GA-TATGTATTTTAAATAT-CAC-TTG-----------------ATGAAAAATAAGCCGTAGTagt
gi|21 : gcgCCAAA-TGATC-TT-CAAA-GA--GC--AGTT--GA-------------G---------AGCAATTGG--TG---AATTTAGATTG-TTCAAAC-------T----------------T-G------AC---------AGCATTCT-ATT---ACTTTA---TC---GG-TG---ATTTTAAAAAAACAA-ACGA-TT--------AAGAAGTGAAAAATGAGCTGTAGTAT
gi|23 : tgacaatttgatgacac-------------G---------A----------TG---CATTCAAATTG-TTCAAAAGTCAT--T----A-------T---C-G------AT---------ATTAATGTTATC---ATTTTG---TC---GA-TATGTATTTTAAATAG-CAC-TTGATT---------AAAATATGAAAAATGAGCTGTAGT
gi|24 : tgagagaaaatc-------------G---------A----------TG---CATTACAATTG-TTCACAA-------A----AG------T---C-GGAATCGAT---------ATTATGTTTATC---ACTTTA---TC---GA-TATGTATTTTAAATAT-CAC-TTG-----------------ATGAAAAATAAGCCGTAGT
gi|28 : gttgatagctaatt-------------G---------A----------TG---CATTCATATTG-TTCAAAA-------T----TG------T---C-A------CTAACG-----ATGAGTTTTCTT---ATTTTA---TC---GA-TAAGAATCATAAGTAG-CAC-Tt
gi|30 : aaatt----AA------T---C-T------AT---------ATCAATTTTATC---ATTTTAATATC---GA-TACGTTATTTAAATAG-TAC-TTGA-T---------GAAAGATGAatatgagctgttatgtt
gi|29 : tcgg------T---C-A------AT---------ATTATTTTTAAC---ATTTTG---TC---GA-TAGGTATTTCAATTAA-AACTTTGA-T---------AAGATATGAAATATGACGTGTAGTgc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|26 ): CATGAGACACGCACGAAGAGCTATAAACTTTTCCCCCTGAAAAACGTCGCGTGTTAAAAAACCCAGTCAGGTATATAGGGACATGCAAGGGCTTCCGTTAGAATAATGAT
Unaligned ( gi|31 ): GACTATTAAGTAAGTCAGTGCTACATGTATTTTTATCTGAAAACGTCACATGTT
Alignments
lowQualScore : 111111111 1111 8888888888888888888888888888888 333333 44444444444444444444444444444 11111111 11111 11111 11 22222222 22 66666666666666666666666666666666666 22222222 22222222222222 9999999999999999999999999999999999 33333333333333333333333333333333333333333333 22222222222
lowQualScore : 4 4 3 1 3 555 333333333 88888 3 0 3 3 44 3 2222 7777 3 3 666 3 9999 3 666 55 7777777777777777777777777777777 3 7 4 4 4 66 777777 9999 66666666666666666666666666666 8888 4 55555555 1 4 55 11111 00000 2 7 666 66666 4 0 00 5 88888888 5 5 888 22 66 4 4 1 00000000000000000000000000000000000 4 66666666 4 66 4 4 66 2 4 99999999999999 2 777 8888 3 3 55555 44 3 1 3 44 44 44 1111111111111111111111111111111111 555 2 44444444444444444444444444444444444444444444 555 555 3 666 3 3 11111111111
lowQualScore : . . . . . ... ......... ..... . . . . .. . .... .... . . ... . .... . ... .. ............................... . . . . . .. ...... .... ............................. .... . ........ . . .. ..... ..... . . ... ..... . . .. . ........ . . ... .. .. . . . ................................... . ........ . .. . . .. . . .............. . ... .... . . ..... .. . . . .. .. .. .................................. ... . ............................................ ... ... . ... . . ...........
lowQualScore : 0 9 3 2 3 888 333333333 33333 3 4 3 1 22 1 7777 7777 6 6 444 6 3333 6 444 00 6666666666666666666666666666666 6 3 4 4 0 22 111111 4444 99999999999999999999999999999 5555 0 11111111 0 0 55 11111 00000 5 3 000 99999 4 1 66 0 00000000 2 0 444 88 11 4 6 1 11111111111111111111111111111111111 4 99999999 4 11 4 4 11 9 4 55555555555555 4 000 3333 6 6 66666 22 1 0 1 22 22 22 2222222222222222222222222222222222 000 9 88888888888888888888888888888888888888888888 444 444 1 888 1 1 77777777777
consensus : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A---ACT-CATA-ATACGCAAAATA-T---AATT--TACG---------TGGG-----T-TG---------GA-CCGTT-TGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------T---TAAGT--G---G--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT-----AGTCTAAAA-----GGACATGGAAGGGTTTT-CGTT-G--GAATAATGATTTATAA-TTG-CTTAAA-----TTATAAGAG-GCA--GGG-A--TATTCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAA--GGGGTA----TTTT--TATA-G-TTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAAT------GTT-C---GAGTC---AGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---ATTTTA---TCGA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGT
Reference ( family-998 ) : NTCGA-TCTNTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A---ACT-CANA-ATACGCAAAATA-T---AATT--TACG---------T--------T-TG---------GA-CCGTT-TGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------T---TAAGT--G---G--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT-----AGTCTAAAA-----GGACATGGAAGGGTTTT-CGTT-G--GAATAATGGTTTATAA-GTG-CTTAAA-----TTATAAGAG-GCA--GG--A--TATTCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAA--GGGGTA----TTTT--TATA-G-TTTCTACATAA-CACGT-CGTCTGCTGTCA--T-T-CTA--AATCACGTG-ATGTAAAAT------GNT-C---GAGNC---AGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---ATTTTA---TCGA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGT
gi|1 : TCCA-TCTTTACACGCATGCGTACAGATGGT-AAACATTGCA-GCAT---GTC---------GAAGAG-----TG-CAGTAGA-TATACCCATATT-TTCCACAGA--TTAT-GGAAGAAAAGAGGT----TAGA----ATAGAA-CGAGATAC-A---ACT-CATA--TAC--AAAATA-T---AATT--TACG---------TGGGATCA-T-TAT--------GA-CCGTA-TGATAAACC-AAGA-GCC-AG-GAG------ACACGCACGTAG----GGCT-----------C---TAAGTTAGT--G--CCATTTTT----ATCTGAAAA-AGTCTCATGTTT--A----AAAAAAAA-ACATGGGACATGGAAGAGTAAAAAAACATGGGACGTGGAAGAGTTTT-CGTT-G------AAT-----------TG-CTTGA------CTATAAGAG-GCA--GG--AAATATTCCCAT-TCTTGAAAAGCTAGTGTG-------TA---------------TT--TA---------TACACAA-CA----CGTCTGTTGTCA--T-T-CAA--AATCACGTA-ATGTGAAGT------GTC-C---GAGTC---AGC--ATGTG-G-ACA--C---------------T--GATCTT-CAAA-GC--GC--ACTT--GAGAGCTAATT----G---------A----------TG---CAATCAAGGTA-TTCAACATACTATGT----AG------T---T-G------GT---------ATTATTTTTTTTTTGATTTTG---TCTA-TGC--GTAGTTT-AAATAGTAT-TTGA-T---------TAAATATGAAAAATGAGCTGTAG
gi|10 : atactttttgacatcccatacaaagagacttccccggcttAAAA-----ACACATGGAAGGGTTTC-CGCT-
gi|10 : TTTC-CGTT-G--GAATAATACTTTATAA-TTA-CTT-GA-----TTATAAGAG-GCG--GG--A--AATtttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggatatataagtttctacataacacgtttattgtcattctaaatcacgtgatgtaaaatgttgcatggagccgtcagcatgaagaaacttttgaattccggatgtttttcaaagcgcagtggagagaaatttgatgcattgaaattgttcacaatagtcggtatcgatat
gi|10 : aaaaacacatggaagggtttccgctttt--TATAAG-TTTCTACATAA-CACGT-T---TATTGTCA--T-T-CTA--AATCACGTG-ATGTAAAAT------GTTGCATGGAGCCGTCAGC--ATGAA-G-AAA--CT-TTTGAATTCCGGAT--GTTTTT-CAAA-GC--GC--AGTG--GAGAGAAATTT----G---------A----------TG---CATTGAAATTG-TTCACAA-------T----AG------T---C-G------GT---------ATtacggatatataagtttctacataacacgtttattgtcattctaaatcacgtgatgtaaaatgttgcatggagccgtcagcatgaagaaacttttgaattccggatgtttttcaaagcgcagtggagagaaatttgatgcattgaaattgttcacaatagtcggtatcgatat
gi|11 : aaaaacacatggaagggtttccgcttttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggata-ACGTTG--TTT-----AGTCTATAA-----GCACGTGGAATGACTTTGCG---G--G--TAATGGTTTATAA-TTG-CTTA-------TTCTA-GAG-GCA--GGGTA--TATTCCCATATCTTGAAA-GCGAGTGTG---------------------------------G-TTTCTAC-TAA-CA----CATCTGCTGTCA--TATACTAATAAT-ACTTGAATGTAAAAT------ATT-CCG-AAGTC---AGTCATTGAA-A-AAA--CTCTTTGAATTCC-GAT--GATCTTGTACA-GC--GC--AATT--Gcgatat
gi|12 : at--A----AAATAAAA-ACGTTG--TTT-----AGTCTATAA-----GGACATGGAATGACTTTGCG---G--G--TAATGGTTTATAA-TTG-CTTAA------TTATAAGAG-GCA--GGGTA--TATTCCCAT-TCTTGAAA-GCGAGTGTGG----------------------------------TTTCTACATAA-CACAT-C---TGCTGTCA--T-T-CTA--AATCACTTG-ATGTAAAAT------ATC-C---GAGTC---AGC--TTGAA-A-AAA--CT-TTTGAATTCCGGAT--GATCTT-TATA-GC--GC--AATT--GA-------------cggacggttcatttacaccatttcaaga
gi|13 : TCGA-TCTGTACACGCAAGCGCACAGAGGGT-AAACATTTCG-GCAT---GTT---------GATGCA-----TA-CAATGGA-TATACCGAGAAT-TTTTACAGA--TTAT-GGGAGAATAGAGAC----TAAA----GTAGAA-CGAGATAC-A---ACT-CATA-ATACGCAAATTA-T---AATT--TACG---------TGGGGATCAT-TAT--------GA-CCGTT-TGATA-----AAGG-GCC-AT-GAcacggttatttacaccatttcaaga
gi|14 : cgcttcggcctatacaaaacaggggaaaaaaccgagtccccacctTCGA-CCTG-ACACGCATGCGCACAGAGGGT-AA-CATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACA-CCAG-AT-ATTTACAGA--TTAT-GGGAGAAAAGAAGC----TAG-----GTAGAA-CGAGCTAA-C---ACT-CAT--ATACGCAAAATA-T---AATT--TACG---------T--------G-GG---------GATCCATTATGATatgtta
gi|15 : ggccaatactaaaaaacaaacgagtcggccctAAT------GTC-T---AAGTC---TGC--ATGAA-G-AAA--AT-TTTGAATTCCGACT--GACCTT-CAAT-GC--GC--TGTT--GA-------------G---------AGGAAAC----TGAAGTATTCAAATTT-TTTAAAA-------T----AG------T---C-GGCATCGAT---------ATTATTTTTATA---ATTTTG---TCGA-TAC--GCATTTT-AAATAGCAC-TTGA-TA--------AAAATGTGAAAAATGAGCTGTAGTccataaatggtaaacagt
gi|16 : gtgt--GG--A--TATTCCCAT-TTGTGAAAAGCGAGTGTCAATTCGTTAA--GGGATA----TTTT---------------------CACGT-C------TATCA--T-T-CTA--AATCACGTG-ACGTAAAAT------GT-----------------------A-G-AAA--CT-TTTGAATTCCCGAT--GATCTG-CATA-GC--AC--AGTT--GA-------------GAGCTAATTAA----------TG---CA-TCAACTTA-TTCAAAA-------T----AGTCGGAAT---C-G------AT---------ATTATGTT
gi|17 : CATAAACAC-T-CGTTTGATGACAAAT-T-CTA--A-TCACGTG-ATGTAAAAT------G-T-C---TAAGC---AG---TTGAATG-AAAGTTT-TTTGAATTCCGAATTGAATGCT-CATATGT--GC--AGAT--GA-------------G---------AGCTAATTGGTTG---TGTTCAAATTGTTTTAAAA-------T----AG------T---CTG------A----------ATCGTTTT
gi|18 : TGAA-T-AAA--CC-TTTGAATTC-GGAT--GATCTT-CAAA-GCTGAT--AGTTCAGA-------------GTAAATTG--A----------TG---CATTCAAATTG-TTCAAGA-------TTATTAG------TTATC-A------AT---------ATCATTTTTATC---ATTTTA---TCGA-TAC--ATATTTT-GAATAGCAC-TTCATT---------AAAATGTGGAAAATGAGCTGTAGTactactacatttctaat
gi|19 : cACCCAGGGT-TTTGACAAA--T----GTTCGAAGAGATGTCT--TAAA----GTAGTA-CGAGATAC-ATGTACTACTCA-ATAAGCAAAATA-T---AATT--TACA---------TGGGGATCAT-TAT--------GA-CTTTT-TGATAAACC-AAGA-GAC-------------ACACGATCGCAA----GGCT-----------T---TAA-T--A--------AATTTT----ATCTGAAAA-CCTCAagt
gi|2 : TCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAG-TTTTACGGA--TTAT-GGGAGAAAATTGGT----TAGA----ATACACTCGAGATAC-A---ACT-CAAA-ATGTGGAAAATA-T---AATT--TACG---------T--------T-TG---------G-----TT-TGATAAACC-AAGA-GCC-AC-GAGT--CAGACACGTACGCAG----GGCTA----------T---TAAG---G---G--CTATTTTTTTTAATCTGAAAA-CGTGTCATGTTT--A----AATTCAAA-ACATTG--TTT-----AGTCTAACA-----GAACAT--AAGAGTTTT-CATTTG--GAGTAATGAGTTATAA-GTG-CTTAAAATTCTTTAT------GC----------TATCCCCAT-TCTTGAAAAACGAGTGTGGATTCCTTAA--GGGGGA----TTTT--TATAAG-TTTCTACATAA-CACGTACGTTTGTTGTCA--T-T-CTA--AATCAC----ATGTAAAAT-------TT-C---GAAAC---AGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GAATTT-CATA-AC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---GTTTTA---TCTA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGTt
gi|20 : gTCGG-TCTTTACACGCATAAGCAGAGAAGGT-AAAC--TACA-GCATTTAGTCCAGAGAGAGGAAGCG-----TA-AAATGGA-TAGATCCAGAAA-TTTGACAGA--TTAT-GCAAGAAAAc
gi|21 : aattaatacttagccctatgaaatatacattgagactccttCCAAAT--GATCTT-CAAA-GA--GC--AGTT--GA-------------G---------AGCAATTGG--TG---AATTTAGATTG-TTCAA--------------AC------T---T-G------AC---------AGCA-TTCTATT---ACTTTA---TCGG-TG-----ATTTTAAAAAAACAA-ACGATT---------AAGAAGTGAAAAATGAGCTGTAGTATtcaag
gi|22 : tgacaatttgatgacac-TTTGAATTCCGGAT--GATCTG-CATA-GC--GC--AGTT--GATAGCTAATT----G---------A----------TG---CATTACAATTG-TTCACAA-------A----AG------T---C-GGAATCGAT---------ATTATGTTTATC---ACTTTA---TCGA-TAT--GTATTTT-AAATATCAC-TTG-----------------ATGAAAAATAAGCCGTAGT
gi|23 : gcg-------------G---------A----------TG---CATTCAAATTG-TTCAAAAGTCAT--T----A-------T---C-G------AT---------ATTAATGTTATC---ATTTTG---TCGA-TAT--GTATTTT-AAATAGCAC-TTGATT---------AAAATATGAAAAATGAGCTGTAGT
gi|24 : tgagagaaaatc-------------G---------A----------TG---CATTACAATTG-TTCACAA-------A----AG------T---C-GGAATCGAT---------ATTATGTTTATC---ACTTTA---TCGA-TAT--GTATTTT-AAATATCAC-TTG-----------------ATGAAAAATAAGCCGTAGT
gi|25 : gttgatagctaattTTGA-TCTTTACACACATGCAAACAGAGGGT-AAACATTTCA-GCAT---ATC---------GATGCA-----GA-CAATCGA-TATATCTAGAAT-TTATATAGA--TTAT-GGGAGAAGAt
gi|26 : ccgtcttC-AT-GAG------ACACGCACGAAG----AGCTA----------T---AAA-----------CT-TTTCC----CCCTGAAAAACGTCGCGTGTT-----------AAAAA-ACCCAG--TCA-----GGTATATAG-----GGACATGCAAGGGCTTC-CGTT-A--GAATAATGATtaaaagat
gi|27 : TGCACACAAATGGT-AA-CATTTCA-GCAA---GTC---------GATACA-----TA-CA----------CCCATAATATTTTACAGA--TTTT-GGAAGAAAAGAGGC----TAGATAGAGTAGAA-CGAGATAC-A---ACT-CATA-ATA
gi|28 : c-------------G---------A----------TG---CATTCATATTG-TTCAAAA-------T----TG------T---C-A------CTAACG-----ATGAGTTTTCTT---ATTTTA---TCGA-TAA--GAATCAT-AAGTAGCAC-T
gi|29 : aaatt------T---C-A------AT---------ATTATTTTTAAC---ATTTTG---TCGA-TAG--GTATTTC-AATTAAAACTTTGA-T---------AAGATATGAAATATGACGTGTAGTatatgagctgttatgtt
gi|3 : taT-AAACAAATCA-CCAT---GAC---------GTTGCT-----TA-CCATGGA-TATACTAAGAAT-TTTTACAGA--TCAT-GAGAG-GGGGAGGG----TAGA----GCATAA-CAAGATGC-A---ATT-C----ATATGGAGAATG-TGGAAAT-----CA---------T--------T-AT---------GA-CCATT-TGATAAAAC-AATA-GCC-AT---G---C-GACAAGTACAGAG----GTATA----------T---TAAGT--AAATG--CTTTTTAT----ATCTGAAAA--ATCACAC-TTT--A----At
gi|3 : atgtA-ACATTC--CTT-----AGTTTAAAA-----GGACATGCAAGG-TTTT-CGCT-G--GAATAATGATT-ATAA-GTG-CTTAA------TTGTAGGAG-GCA--AGGAA--TATTCCCAT-TCTTGAAAAGCTAATGTGGGCCCTTTAA--GGGGTATTTCTTTT--TATACA-TTTGTACACAA--AC---CGTCAGTTGTCA--T-T-CTG--AATTGCATG-ATGTAAAAT------G-T-C---GAGTC---AGA--TTGAA-G-GAA--C----TGAATTTCGATT--GATCTT-CATA-GC--GC--AGTG--GATAGCAAACG----G---------G----------TC---CATTCAAATTG-TTCAAAA-------T----AG------T---C-----------------------TTTTTG--------TTA---ACAAGTACATGTATCTT-CAAT------CTGA-T---------AAAAccaccaccccccacccccctctcccaataaacccaatgtaacattccttagtttaaaaggacatgcaaggttttcgctggaataatgattataagtgcttaattgtaggaggcaaggaatattcccattcttgaaaagctaatgtgggccctttaaggggtatttctttttatacatttgtacacaaaccgtcagttgtcattctgaattgcatgatgtaaaatgtcgagtcagattgaaggaactgaatttcgattgatcttcatagcgcagtggatagcaaacgggtccattcaaattgttcaaaatagtctttttgttaacaagtacatgtatcttcaatctgataaaa
gi|30 : atgttaaacaaatcaccatgacgttgcttaccatggatatactaagaatttttacagatcatgagagggggagggtagagcataacaagatgcaattcatatggagaatgtggaaatcattatgaccatttgataaaacaatagccatgcgacaagtacagaggtatattaagtaaatgctttttatatctgaaaaatcacactttaaccaccaccccccacccccctctcccaataaacccaatgt----AA------T---C-T------AT---------ATCAATTTTATC---ATTTTAATATCGA-TAC--GTTATTT-AAATAGTAC-TTGA-T---------GAAAGATGA
gi|31 : tcggTATTTTT----ATCTGAAAA-CGTCACATGTTgc
gi|4 : gactattaagtaagtcagtgctacatgTCGAATCT-TACACGCATGCGCACAGAGGGTAAAACATTTCG-GCAT---GTC---------GATGCAACATGTAGCAATGGACTATAACCAGAAT-TTTTACAGAATCTAT--GGAGAAAAGAGGCGCTATAGA--------AA-CGATATACAA---ACT-CATAGATATGCAAAATATT---AATTTATACG---------T--------G-TGGGATATTATGA-CCG-T-TAATAAACCAAAGAGGCCGATGGAGT--CAGGTACACAGGCA-----GGCTAAATAAAAACGT---TAAGTAAG---GTTCTA-TTTT----ATCCGAAAA-CGTCAAATGTTTTAA----AAATGAAA-ACATTG--TTT-----AGTCTAA--------GACTTGGACGGGTTTT-CGTG-GACGAA-AATGATTTATAACGTGTCTTTAA-----TTATAAGAGCGCT--GGA-A--TAATCCTAT-TCTTGAAAAGC-AGTATGGATTCTTTAA--GGGGTA----
gi|5 : caaaccaaaacaaaagcaacacaatttTCGA-TCTGTACACGCATGAGCACAGAGAGC-AAACATTTAG-GCAT---GTC---------GAAGCA-----TA-CAATGAA-TATACCCAGGAT-TTTTACAGA--TTA-------AAAAGAGGC----GAGC----GTAAAA-CGAGAAAC-A---ACT-CATA-ATACGCAAAATA-T----ATT--TACG---------TGGGGATCAT-TAT--------GA-CCGTT-TGATAAACC-AAGA-GCC-AT-GAGAGTCAGACATGCACGCAG----GGCTA----------T---TAAGT--AGGTG--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--ATAAGAAAAAAAACACACCA--ATT-----AGTCTAAAA-----AGACCTTGAAGGGTTTT-Catcatcattctctcttacacagttg
gi|6 : tataaaaaataaaataaacgagtacccgccttAC-TCTTGAAACGCGAGTGTGAATTCTTCAA--GAGGTA----TTTTATTATA-AATTTCCACATAA-CATGT-C---TGTGGTCA--T-T-GTA--AATCACGTA-ATGTAAAATGTCCGAGCT-C---GAGGC---AGC--TTGAA-GAAAA--AT-TTTGAACTCCGGAT--GATATT-CATA-GT--GCAGAGTT--GAGAGCTAATCAATTG---------A----------TG---TAGTCAAATTG-TTCAAAA-------T----AG------T---C-GGA----ATCAATATTTAATTATTTCTATC---ATTTTA---TCGA-TAT--GTATTTT-AAATAGCAC-TTAA-TTGTCAGTTGAAAATATGAAAAATGAGTTGCAGTGT
gi|7 : TCGA-TCTTTAAACGTATGCGCACACACGAT-AAAC-TTTGGAGCAT---GT----------AAT--------TA-CA------TACACCCAGAAT-TTTCACAGA--TTTTTGGGAGAAAAGAGGT----TAGA----GTAGAA-CGAGACAC-A---ACT-T----ATTTGTAATATA-T---AATT--TTCGAAGGGGTCAT--------T-AT---------GA-CCGTT-TGATAAACC-AAGA-GAC-A--GA-----AGACAAGCACGCAG----GGCTA----------TCAATAAGT--G---A---TATTTTT----ACCTGACAA-CGTCACATG-TT--A----AAATCAAA-GTACTG--
gi|8 : ttgacggcccatgccaaaaataaagttcccgccttTCGA-CCTGTACACGCATGCGCACAGAGGGT-AACCATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACACCCAGAAT-ATTTACAGA--TTAT-GGGAGAAAAGAAGC----TAGA----GTAGAA-CGAGCTAC-A---ACT-CATA-ATACGCAAAATA-T---AATT--TACG---------T--------G-GG---------GA-TCATTATGAag
gi|9 : aaaactttctaatggccaatactaaaaaacaaacgagtcaccgccct-T---AATT---ACA---------T--------TATG---------G--TCGTT-CGCTAAACC-AAGA-GCC-AT-GAG------ACGCGCACGTAGTCAAGGATA----------T---TTAAT--GAGTG--CCATTTTA----A-CTGAAAA-CGTCACATGTT---------AAAAAAC-ACATTG--TTT-----AGTCTAAAA-----GGACATG-AAGGGTTTC-CGTT-G--GAATAAGGATTTATTA-TTA---TGAA-----TAATGTGAG-ACAAGGG--A--GGTTTTCAT-TCTTGACAAGCGAGTGTGGATCCTTTAAAGAGGGTA----TTTctcatgaatggctaaacagtcataatgatccccacgtaaattataatttgtaaattgtat
Alignments
lowQualScore : 111111111 1111 111111 7777777777777 333333 44444444444444444444444444444 11111111 11111 11111 22222222 111 66666666666666666666666666666666666 22222222 222222222222 1111 9999999999999999999999999999999999 33333333333333333333333333333333333333333333 22222222222
lowQualScore : 4 5 3 1 3 555 333333333 88888 3 0 3 3 44 3 2222 7777 3 3 000000 77 4 777 55 8888 55 9999999999999 4 7 4 4 4 66 777777 9999 66666666666666666666666666666 8888 4 55555555 1 4 55 11111 00000 2 7 666 66666 0 5 5 88888888 5 5 77 111 4 4 1 00000000000000000000000000000000000 4 66666666 66 4 4 66 2 4 555555555555 0000 8888 3 3 55555 44 3 1 3 44 44 44 1111111111111111111111111111111111 555 2 44444444444444444444444444444444444444444444 555 555 3 666 3 3 11111111111
lowQualScore : . . . . . ... ......... ..... . . . . .. . .... .... . . ...... .. . ... .. .... .. ............. . . . . . .. ...... .... ............................. .... . ........ . . .. ..... ..... . . ... ..... . . . ........ . . .. ... . . . ................................... . ........ .. . . .. . . ............ .... .... . . ..... .. . . . .. .. .. .................................. ... . ............................................ ... ... . ... . . ...........
lowQualScore : 0 0 3 2 3 888 333333333 33333 3 4 3 1 22 1 7777 7777 6 6 555555 99 0 000 55 5555 55 0000000000000 0 3 4 4 0 22 111111 4444 99999999999999999999999999999 5555 0 11111111 0 0 55 11111 00000 5 3 000 99999 1 0 0 00000000 2 0 22 444 4 6 1 11111111111111111111111111111111111 4 99999999 11 4 4 11 9 4 666666666666 3333 3333 6 6 66666 22 1 0 1 22 22 22 2222222222222222222222222222222222 000 9 88888888888888888888888888888888888888888888 444 444 1 888 1 1 77777777777
consensus : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAAATA-T---AAT--TTA----CG--TGGGG----TTAT---GA-CCGTT-TGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------T---TAAGT--G---G--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT-----AGTCTAAAA-----GGACATGGAAGGGTTTT-CGTT-G--GAATAATGATTTATAAT-TG-CTTAAA-----TTATAAGAG-GCA-GGG-A-TATTCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAA--GGGGTA----TTTT--TATA-G-TTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATGT------C-C---GAG---TCAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---ATTTTA---TCGA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGT
Reference ( family-998 ) : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAAATA-T---AAT--TTA----CG--TGGG-----TTG----GA-CCGTT-TGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------T---TAAGT--G---G--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT-----AGTCTAAAA-----GGACATGGAAGGGTTTT-CGTT-G--GAATAATGATTTATAAT-TG-CTTAAA-----TTATAAGAG-GCA-GGG-A-TATTCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAA--GGGGTA----TTTT--TATA-G-TTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATGT------T-C---GAG---TCAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---ATTTTA---TCGA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGT
gi|1 : TCCA-TCTTTACACGCATGCGTACAGATGGT-AAACATTGCA-GCAT---GTC---------GAAGAG-----TG-CAGTAGA-TATACCCATATT-TTCCACAGA--TTAT-GGAAGAAAAGAGGT----TAGA----ATAGAA-CGAGATAC-A------ACTCATA--TAC--AAAATA-T---AAT--TTA----CG--TGGGATCA-TTAT---GA-CCGTA-TGATAAACC-AAGA-GCC-AG-GAG------ACACGCACGTAG----GGCT-----------C---TAAGTTAGT--G--CCATTTTT----ATCTGAAAA-AGTCTCATGTTT--A----AAAAAAAA-ACATGGGACATGGAAGAGTAAAAAAACATGGGACGTGGAAGAGTTTT-CGTT-G----------------AAT-TG-CTTGA------CTATAAGAG-GCA-GGA-AATATTCCCAT-TCTTGAAAAGCTAGTGTG-------TA---------------TT--TA---------TACACAA-CA----CGTCTGTTGTCA--T-T-CAA--AATCACGTA-ATGTGAAGTGT------C-C---GAG---TCAGC--ATGTG-G-ACA--C---------------T--GATCTT-CAAA-GC--GC--ACTT--GAGAGCTAATT----G---------A----------TG---CAATCAAGGTA-TTCAACATACTATGT----AG------T---T-G------GT---------ATTATTTTTTTTTTGATTTTG---TCTA-TGC--GTAGTTT-AAATAGTAT-TTGA-T---------TAAATATGAAAAATGAGCTGTAG
gi|10 : atactttttgacatcccatacaaagagacttccccggcttAAAA-----ACACATGGAAGGGTTTC-CGCT-
gi|10 : TTTC-CGTT-G--GAATAATACTTTATAAT-TA-CTT-GA-----TTATAAGAG-GCG-GGA-A-tttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggatatataagtttctacataacacgtttattgtcattctaaatcacgtgatgtaaaatgttgcatggagccgtcagcatgaagaaacttttgaattccggatgtttttcaaagcgcagtggagagaaatttgatgcattgaaattgttcacaatagtcggtatcgatat
gi|10 : aaaaacacatggaagggtttccgcttttat--TATAAG-TTTCTACATAA-CACGT-T---TATTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATGT------TGCATGGAGCCGTCAGC--ATGAA-G-AAA--CT-TTTGAATTCCGGAT--GTTTTT-CAAA-GC--GC--AGTG--GAGAGAAATTT----G---------A----------TG---CATTGAAATTG-TTCACAA-------T----AG------T---C-G------GT---------ATtacggatatataagtttctacataacacgtttattgtcattctaaatcacgtgatgtaaaatgttgcatggagccgtcagcatgaagaaacttttgaattccggatgtttttcaaagcgcagtggagagaaatttgatgcattgaaattgttcacaatagtcggtatcgatat
gi|11 : aaaaacacatggaagggtttccgcttttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggata-ACGTTG--TTT-----AGTCTATAA-----GCACGTGGAATGACTTTGCG---G--G--TAATGGTTTATAAT-TG-CTTA-------TTCTA-GAG-GCA-GGGTA-TATTCCCATATCTTGAAA-GCGAGTGTG---------------------------------G-TTTCTAC-TAA-CA----CATCTGCTGTCA--TATACTAATAAT-ACTTGAATGTAAAATAT------T-CCG-AAG---TCAGTCATTGAA-A-AAA--CTCTTTGAATTCC-GAT--GATCTTGTACA-GC--GC--AATT--Gcgatat
gi|12 : at--A----AAATAAAA-ACGTTG--TTT-----AGTCTATAA-----GGACATGGAATGACTTTGCG---G--G--TAATGGTTTATAAT-TG-CTTAA------TTATAAGAG-GCA-GGGTA-TATTCCCAT-TCTTGAAA-GCGAGTGTGG----------------------------------TTTCTACATAA-CACAT-C---TGCTGTCA--T-T-CTA--AATCACTTG-ATGTAAAATAT------C-C---GAG---TCAGC--TTGAA-A-AAA--CT-TTTGAATTCCGGAT--GATCTT-TATA-GC--GC--AATT--GA-------------cggacggttcatttacaccatttcaaga
gi|13 : TCGA-TCTGTACACGCAAGCGCACAGAGGGT-AAACATTTCG-GCAT---GTT---------GATGCA-----TA-CAATGGA-TATACCGAGAAT-TTTTACAGA--TTAT-GGGAGAATAGAGAC----TAAA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAATTA-T---AAT--TTA----CG--TGGGGATCATTAT---GA-CCGTT-TGATA-----AAGG-GCC-AT-GAcacggttatttacaccatttcaaga
gi|14 : cgcttcggcctatacaaaacaggggaaaaaaccgagtccccacctTCGA-CCTG-ACACGCATGCGCACAGAGGGT-AA-CATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACA-CCAG-AT-ATTTACAGA--TTAT-GGGAGAAAAGAAGC----TAG-----GTAGAA-CGAGCTAA-C------ACTCAT--ATACGCAAAATA-T---AAT--TTA----CG--TGG--------G----GATCCATTATGATatgtta
gi|15 : ggccaatactaaaaaacaaacgagtcggccctAATGT------C-T---AAG---TCTGC--ATGAA-G-AAA--AT-TTTGAATTCCGACT--GACCTT-CAAT-GC--GC--TGTT--GA-------------G---------AGGAAAC----TGAAGTATTCAAATTT-TTTAAAA-------T----AG------T---C-GGCATCGAT---------ATTATTTTTATA---ATTTTG---TCGA-TAC--GCATTTT-AAATAGCAC-TTGA-TA--------AAAATGTGAAAAATGAGCTGTAGTccataaatggtaaacagt
gi|16 : gtgtGG-A-TATTCCCAT-TTGTGAAAAGCGAGTGTCAATTCGTTAA--GGGATA----TTTT---------------------CACGT-C------TATCA--T-T-CTA--AATCACGTG-ACGTAAAATGT-----------------------------A-G-AAA--CT-TTTGAATTCCCGAT--GATCTG-CATA-GC--AC--AGTT--GA-------------GAGCTAATTAA----------TG---CA-TCAACTTA-TTCAAAA-------T----AGTCGGAAT---C-G------AT---------ATTATGTT
gi|17 : CATAAACAC-T-CGTTTGATGACAAAT-T-CTA--A-TCACGTG-ATGTAAAATGT------C-T---AAG----CAG---TTGAATG-AAAGTTT-TTTGAATTCCGAATTGAATGCT-CATATGT--GC--AGAT--GA-------------G---------AGCTAATTGGTTG---TGTTCAAATTGTTTTAAAA-------T----AG------T---CTG------A----------ATCGTTTT
gi|18 : TGAA-T-AAA--CC-TTTGAATTC-GGAT--GATCTT-CAAA-GCTGAT--AGTTCAGA-------------GTAAATTG--A----------TG---CATTCAAATTG-TTCAAGA-------TTATTAG------TTATC-A------AT---------ATCATTTTTATC---ATTTTA---TCGA-TAC--ATATTTT-GAATAGCAC-TTCATT---------AAAATGTGGAAAATGAGCTGTAGTactactacatttctaat
gi|19 : cACCCAGGGT-TTTGACAAA--T----GTTCGAAGAGATGTCT--TAAA----GTAGTA-CGAGATAC-ATGTACTACTCA---ATAAGCAAAATA-T---AAT--TTA----CA--TGGGGATCATTAT---GA-CTTTT-TGATAAACC-AAGA-GAC-------------ACACGATCGCAA----GGCT-----------T---TAA-T--A--------AATTTT----ATCTGAAAA-CCTCAagt
gi|2 : TCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAG-TTTTACGGA--TTAT-GGGAGAAAATTGGT----TAGA----ATACACTCGAGATAC-A------ACTCAAA-ATGTGGAAAATA-T---AAT--TTA----CG--T--------TTG----G-----TT-TGATAAACC-AAGA-GCC-AC-GAGT--CAGACACGTACGCAG----GGCTA----------T---TAAG---G---G--CTATTTTTTTTAATCTGAAAA-CGTGTCATGTTT--A----AATTCAAA-ACATTG--TTT-----AGTCTAACA-----GAACAT--AAGAGTTTT-CATTTG--GAGTAATGAGTTATAAG-TG-CTTAAAATTCTTTAT------GC--------TATCCCCAT-TCTTGAAAAACGAGTGTGGATTCCTTAA--GGGGGA----TTTT--TATAAG-TTTCTACATAA-CACGTACGTTTGTTGTCA--T-T-CTA--AATCAC----ATGTAAAAT-T------T-C---GAA---ACAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GAATTT-CATA-AC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---GTTTTA---TCTA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGTt
gi|20 : gTCGG-TCTTTACACGCATAAGCAGAGAAGGT-AAAC--TACA-GCATTTAGTCCAGAGAGAGGAAGCG-----TA-AAATGGA-TAGATCCAGAAA-TTTGACAGA--TTAT-GCAAGAAAAc
gi|21 : aattaatacttagccctatgaaatatacattgagactccttCCAAAT--GATCTT-CAAA-GA--GC--AGTT--GA-------------G---------AGCAATTGG--TG---AATTTAGATTG-TTCAA--------------AC------T---T-G------AC---------AGCA-TTCTATT---ACTTTA---TCGG-TG-----ATTTTAAAAAAACAA-ACGATT---------AAGAAGTGAAAAATGAGCTGTAGTATtcaag
gi|22 : tgacaatttgatgacac-TTTGAATTCCGGAT--GATCTG-CATA-GC--GC--AGTT--GATAGCTAATT----G---------A----------TG---CATTACAATTG-TTCACAA-------A----AG------T---C-GGAATCGAT---------ATTATGTTTATC---ACTTTA---TCGA-TAT--GTATTTT-AAATATCAC-TTG-----------------ATGAAAAATAAGCCGTAGT
gi|23 : gcg-------------G---------A----------TG---CATTCAAATTG-TTCAAAAGTCAT--T----A-------T---C-G------AT---------ATTAATGTTATC---ATTTTG---TCGA-TAT--GTATTTT-AAATAGCAC-TTGATT---------AAAATATGAAAAATGAGCTGTAGT
gi|24 : tgagagaaaatc-------------G---------A----------TG---CATTACAATTG-TTCACAA-------A----AG------T---C-GGAATCGAT---------ATTATGTTTATC---ACTTTA---TCGA-TAT--GTATTTT-AAATATCAC-TTG-----------------ATGAAAAATAAGCCGTAGT
gi|25 : gttgatagctaattTTGA-TCTTTACACACATGCAAACAGAGGGT-AAACATTTCA-GCAT---ATC---------GATGCA-----GA-CAATCGA-TATATCTAGAAT-TTATATAGA--TTAT-GGGAGAAGAt
gi|26 : ccgtcttC-AT-GAG------ACACGCACGAAG----AGCTA----------T---AAA-----------CT-TTTCC----CCCTGAAAAACGTCGCGTGTT-----------AAAAA-ACCCAG--TCA-----GGTATATAG-----GGACATGCAAGGGCTTC-CGTT-A--GAATAATGATtaaaagat
gi|27 : TGCACACAAATGGT-AA-CATTTCA-GCAA---GTC---------GATACA-----TA-CA----------CCCATAATATTTTACAGA--TTTT-GGAAGAAAAGAGGC----TAGATAGAGTAGAA-CGAGATAC-A------ACTCATA-ATA
gi|28 : c-------------G---------A----------TG---CATTCATATTG-TTCAAAA-------T----TG------T---C-A------CTAACG-----ATGAGTTTTCTT---ATTTTA---TCGA-TAA--GAATCAT-AAGTAGCAC-T
gi|29 : aaatt------T---C-A------AT---------ATTATTTTTAAC---ATTTTG---TCGA-TAG--GTATTTC-AATTAAAACTTTGA-T---------AAGATATGAAATATGACGTGTAGTatatgagctgttatgtt
gi|3 : taT-AAACAAATCA-CCAT---GAC---------GTTGCT-----TA-CCATGGA-TATACTAAGAAT-TTTTACAGA--TCAT-GAGAG-GGGGAGGG----TAGA----GCATAA-CAAGATGC-A------ATTC----ATATGGAGAATG-TGGAAATCATTA----T-------------------GA-CCATT-TGATAAAAC-AATA-GCC-AT---G---C-GACAAGTACAGAG----GTATA----------T---TAAGT--AAATG--CTTTTTAT----ATCTGAAAA--ATCACAC-TTT--A----At
gi|3 : atgtA-ACATTC--CTT-----AGTTTAAAA-----GGACATGCAAGG-TTTT-CGCT-G--GAATAATGATT-ATAAG-TG-CTTAA------TTGTAGGAG-GCA-AGG-AATATTCCCAT-TCTTGAAAAGCTAATGTGGGCCCTTTAA--GGGGTATTTCTTTT--TATACA-TTTGTACACAA--AC---CGTCAGTTGTCA--T-T-CTG--AATTGCATG-ATGTAAAATG-------T-C---GAG---TCAGA--TTGAA-G-GAA--C----TGAATTTCGATT--GATCTT-CATA-GC--GC--AGTG--GATAGCAAACG----G---------G----------TC---CATTCAAATTG-TTCAAAA-------T----AG------T---C-----------------------TTTTTG--------TTA---ACAAGTACATGTATCTT-CAAT------CTGA-T---------AAAAccaccaccccccacccccctctcccaataaacccaatgtaacattccttagtttaaaaggacatgcaaggttttcgctggaataatgattataagtgcttaattgtaggaggcaaggaatattcccattcttgaaaagctaatgtgggccctttaaggggtatttctttttatacatttgtacacaaaccgtcagttgtcattctgaattgcatgatgtaaaatgtcgagtcagattgaaggaactgaatttcgattgatcttcatagcgcagtggatagcaaacgggtccattcaaattgttcaaaatagtctttttgttaacaagtacatgtatcttcaatctgataaaa
gi|30 : atgttaaacaaatcaccatgacgttgcttaccatggatatactaagaatttttacagatcatgagagggggagggtagagcataacaagatgcaattcatatggagaatgtggaaatcattatgaccatttgataaaacaatagccatgcgacaagtacagaggtatattaagtaaatgctttttatatctgaaaaatcacactttaaccaccaccccccacccccctctcccaataaacccaatgt----AA------T---C-T------AT---------ATCAATTTTATC---ATTTTAATATCGA-TAC--GTTATTT-AAATAGTAC-TTGA-T---------GAAAGATGA
gi|31 : tcggTATTTTT----ATCTGAAAA-CGTCACATGTTgc
gi|4 : gactattaagtaagtcagtgctacatgTCGAATCT-TACACGCATGCGCACAGAGGGTAAAACATTTCG-GCAT---GTC---------GATGCAACATGTAGCAATGGACTATAACCAGAAT-TTTTACAGAATCTAT--GGAGAAAAGAGGCGCTATAGA--------AA-CGATATACAA------ACTCATAGATATGCAAAATATT---AAT--TTATACGTG--TGGGATA--TTAT---GA-CCG-T-TAATAAACCAAAGAGGCCGATGGAGT--CAGGTACACAGGCA-----GGCTAAATAAAAACGT---TAAGTAAG---GTTCTA-TTTT----ATCCGAAAA-CGTCAAATGTTTTAA----AAATGAAA-ACATTG--TTT-----AGTCTAA--------GACTTGGACGGGTTTT-CGTG-GACGAA-AATGATTTATAACGTGTCTTTAA-----TTATAAGAGCGCT-GGA-A-TAATCCTAT-TCTTGAAAAGC-AGTATGGATTCTTTAA--GGGGTA----
gi|5 : caaaccaaaacaaaagcaacacaatttTCGA-TCTGTACACGCATGAGCACAGAGAGC-AAACATTTAG-GCAT---GTC---------GAAGCA-----TA-CAATGAA-TATACCCAGGAT-TTTTACAGA--TTA-------AAAAGAGGC----GAGC----GTAAAA-CGAGAAAC-A------ACTCATA-ATACGCAAAATA-T----AT--TTA----CG--TGGGGATCATTAT---GA-CCGTT-TGATAAACC-AAGA-GCC-AT-GAGAGTCAGACATGCACGCAG----GGCTA----------T---TAAGT--AGGTG--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--ATAAGAAAAAAAACACACCA--ATT-----AGTCTAAAA-----AGACCTTGAAGGGTTTT-Catcatcattctctcttacacagttg
gi|6 : tataaaaaataaaataaacgagtacccgccttAC-TCTTGAAACGCGAGTGTGAATTCTTCAA--GAGGTA----TTTTATTATA-AATTTCCACATAA-CATGT-C---TGTGGTCA--T-T-GTA--AATCACGTA-ATGTAAAATGTCCGAGCT-C---GAG---GCAGC--TTGAA-GAAAA--AT-TTTGAACTCCGGAT--GATATT-CATA-GT--GCAGAGTT--GAGAGCTAATCAATTG---------A----------TG---TAGTCAAATTG-TTCAAAA-------T----AG------T---C-GGA----ATCAATATTTAATTATTTCTATC---ATTTTA---TCGA-TAT--GTATTTT-AAATAGCAC-TTAA-TTGTCAGTTGAAAATATGAAAAATGAGTTGCAGTGT
gi|7 : TCGA-TCTTTAAACGTATGCGCACACACGAT-AAAC-TTTGGAGCAT---GT----------AAT--------TA-CA------TACACCCAGAAT-TTTCACAGA--TTTTTGGGAGAAAAGAGGT----TAGA----GTAGAA-CGAGACAC-A------ACTTAT---T-TGTAATATA-T---AAT--TTT----CGAAGGGG-----TCATTATGA-CCGTT-TGATAAACC-AAGA-GAC-A--GA-----AGACAAGCACGCAG----GGCTA----------TCAATAAGT--G---A---TATTTTT----ACCTGACAA-CGTCACATG-TT--A----AAATCAAA-GTACTG--
gi|8 : ttgacggcccatgccaaaaataaagttcccgccttTCGA-CCTGTACACGCATGCGCACAGAGGGT-AACCATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACACCCAGAAT-ATTTACAGA--TTAT-GGGAGAAAAGAAGC----TAGA----GTAGAA-CGAGCTAC-A------ACTCATA-ATACGCAAAATA-T---AAT--TTA----CG--TGG--------G----GA-TCATTATGAag
gi|9 : aaaactttctaatggccaatactaaaaaacaaacgagtcaccgccctCGTT-CGCTAAACC-AAGA-GCC-AT-GAG------ACGCGCACGTAGTCAAGGATA----------T---TTAAT--GAGTG--CCATTTTA----A-CTGAAAA-CGTCACATGTT---------AAAAAAC-ACATTG--TTT-----AGTCTAAAA-----GGACATG-AAGGGTTTC-CGTT-G--GAATAAGGATTTATTAT-TA---TGAA-----TAATGTGAG-ACAAGGG-A-GGTTTTCAT-TCTTGACAAGCGAGTGTGGATCCTTTAAAGAGGGTA----TTTctcatgaatggctaaacagtcataatgatccccacgtaaattataatttgtaaattgtat
Alignments
lowQualScore : 111111111 1111 1111 555555555 333333333333 44444444444444444444444444444 11111111 1111111 22222222 111 66666666666666666666666666666666666 22222222 2222222222 9999999999999999999999999999999999 33333333333333333333333333333333333333333333 22222222222
lowQualScore : 4 5 3 1 3 555 333333333 88888 3 0 3 3 44 3 2222 7777 3 3 999999 1111 00 3 55 55 3 999999999 3 55 4 4 333333333333 9999 66666666666666666666666666666 8888 4 55555555 1 4 55 777 3333333 2 7 666 66666 0 5 5 88888888 5 5 77 111 4 4 4 1 00000000000000000000000000000000000 4 66666666 66 4 4 66 2 4 4 999999 4 0000000000 8888 3 3 55555 44 3 1 3 44 44 44 1111111111111111111111111111111111 555 2 44444444444444444444444444444444444444444444 555 555 3 666 3 3 11111111111
lowQualScore : . . . . . ... ......... ..... . . . . .. . .... .... . . ...... .... .. . .. .. . ......... . .. . . ............ .... ............................. .... . ........ . . .. ... ....... . . ... ..... . . . ........ . . .. ... . . . . ................................... . ........ .. . . .. . . . ...... . .......... .... . . ..... .. . . . .. .. .. .................................. ... . ............................................ ... ... . ... . . ...........
lowQualScore : 0 0 3 2 3 888 333333333 33333 3 4 3 1 22 1 7777 7777 6 3 666666 0000 77 6 00 00 6 000000000 3 00 0 0 777777777777 4444 99999999999999999999999999999 5555 0 11111111 0 0 55 888 0000000 5 3 000 99999 1 0 0 00000000 2 0 22 444 4 4 6 1 11111111111111111111111111111111111 4 99999999 11 4 4 11 9 4 0 999999 0 9999999999 3333 6 6 66666 22 1 0 1 22 22 22 2222222222222222222222222222222222 000 9 88888888888888888888888888888888888888888888 444 444 1 888 1 1 77777777777
consensus : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAAATA-T--AATT--TACGTG-GG---GATCA-TTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------T---TAAGT--G---G--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT---AGTCTAAAA-------GGACATGGAAGGGTTTT-CGTT-G--GAATAATGATTTATAAT-TG-CTTAAA-----TTATAAGAG-GCA-GG-G-A-TATTCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAA--GGGGTA----TTTT--TATA-G-TTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TC-C---G-AG---T------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---ATTTTA---TCGA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGT
Reference ( family-998 ) : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAAATA-T--AATT--TACGTG-GG---G-----TTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------T---TAAGT--G---G--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT---AGTCTAAAA-------GGACATGGAAGGGTTTT-CGTT-G--GAATAATGATTTATAAT-TG-CTTAAA-----TTATAAGAG-GCA-GG-G-A-TATTCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAA--GGGGTA----TTTT--TATA-G-TTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TC-C---G-AG---T------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---ATTTTA---TCGA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGT
gi|1 : TCCA-TCTTTACACGCATGCGTACAGATGGT-AAACATTGCA-GCAT---GTC---------GAAGAG-----TG-CAGTAGA-TATACCCATATT-TTCCACAGA--TTAT-GGAAGAAAAGAGGT----TAGA----ATAGAA-CGAGATAC-A------ACTCATA--TAC--AAAATA-T--AATT--TACGTG-GGATCA-----TTATGA-CCGT--ATGATAAACC-AAGA-GCC-----AG---GAGACACGCACGTAG----GGCT-----------C---TAAGTTAGT--G--CCATTTTT----ATCTGAAAA-AGTCTCATGTTT--A----AAAAAAAA-ACATGGGACATGGAAGAGTAAAAAAACATGGGACGTGGAAGAGTTTT-CGTT-G----------------AAT-TG-CTT-GA-----CTATAAGAG-GCA-GGAA-A-TATTCCCAT-TCTTGAAAAGCTAGTGTG-------TA---------------TT--TA---------TACACAA-CA----CGTCTGTTGTCA--T-T-CAA--AATCACGTA-ATGTGAAGTG-TC-C---G-AG---T------CAGC--ATGTG-G-ACA--C---------------T--GATCTT-CAAA-GC--GC--ACTT--GAGAGCTAATT----G---------A----------TG---CAATCAAGGTA-TTCAACATACTATGT----AG------T---T-G------GT---------ATTATTTTTTTTTTGATTTTG---TCTA-TGC--GTAGTTT-AAATAGTAT-TTGA-T---------TAAATATGAAAAATGAGCTGTAG
gi|10 : atactttttgacatcccatacaaagagacttccccggcttAAAA-------ACACATGGAAGGGTTTC-CGCT-
gi|10 : TTTC-CGTT-G--GAATAATACTTTATAAT-TA-CTT-GA-----TTATAAGAG-GCG-GG-A-A-tttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggatatataagtttctacataacacgtttattgtcattctaaatcacgtgatgtaaaatgttgcatggagccgtcagcatgaagaaacttttgaattccggatgtttttcaaagcgcagtggagagaaatttgatgcattgaaattgttcacaatagtcggtatcgatat
gi|10 : aaaaacacatggaagggtttccgcttttat--TATAAG-TTTCTACATAA-CACGT-T---TATTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TTGCATGG-AGCCGT------CAGC--ATGAA-G-AAA--CT-TTTGAATTCCGGAT--GTTTTT-CAAA-GC--GC--AGTG--GAGAGAAATTT----G---------A----------TG---CATTGAAATTG-TTCACAA-------T----AG------T---C-G------GT---------ATtacggatatataagtttctacataacacgtttattgtcattctaaatcacgtgatgtaaaatgttgcatggagccgtcagcatgaagaaacttttgaattccggatgtttttcaaagcgcagtggagagaaatttgatgcattgaaattgttcacaatagtcggtatcgatat
gi|11 : aaaaacacatggaagggtttccgcttttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggata-ACGTTG--TTT---AGTCTATAA-------GCACGTGGAATGACTTTGCG---G--G--TAATGGTTTATAAT-TG-CTTA-------TTCTA-GAG-GCA-GG-GTA-TATTCCCATATCTTGAAA-GCGAGTGTG---------------------------------G-TTTCTAC-TAA-CA----CATCTGCTGTCA--TATACTAATAAT-ACTTGAATGTAAAATATTC-C---GAAG---T------CAGTCATTGAA-A-AAA--CTCTTTGAATTCC-GAT--GATCTTGTACA-GC--GC--AATT--Gcgatat
gi|12 : at--A----AAATAAAA-ACGTTG--TTT---AGTCTATAA-------GGACATGGAATGACTTTGCG---G--G--TAATGGTTTATAAT-TG-CTTAA------TTATAAGAG-GCA-GG-GTA-TATTCCCAT-TCTTGAAA-GCGAGTGTGG----------------------------------TTTCTACATAA-CACAT-C---TGCTGTCA--T-T-CTA--AATCACTTG-ATGTAAAATA-TC-C---G-AG---T------CAGC--TTGAA-A-AAA--CT-TTTGAATTCCGGAT--GATCTT-TATA-GC--GC--AATT--GA-------------cggacggttcatttacaccatttcaaga
gi|13 : TCGA-TCTGTACACGCAAGCGCACAGAGGGT-AAACATTTCG-GCAT---GTT---------GATGCA-----TA-CAATGGA-TATACCGAGAAT-TTTTACAGA--TTAT-GGGAGAATAGAGAC----TAAA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAATTA-T--AATT--TACGTG-GG---GATCA-TTATGA-CCGT--TTGATA-----AAGG-GCC-AT-GAcacggttatttacaccatttcaaga
gi|14 : cgcttcggcctatacaaaacaggggaaaaaaccgagtccccacctTCGA-CCTG-ACACGCATGCGCACAGAGGGT-AA-CATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACA-CCAG-AT-ATTTACAGA--TTAT-GGGAGAAAAGAAGC----TAG-----GTAGAA-CGAGCTAA-C------ACTCAT--ATACGCAAAATA-T--AATT--TACGTG-GG---GATCCATTATGATCCATAAATGGTAAACatgtta
gi|15 : ggccaatactaaaaaacaaacgagtcggccctAATG-TC-T---A-AG---T------CTGC--ATGAA-G-AAA--AT-TTTGAATTCCGACT--GACCTT-CAAT-GC--GC--TGTT--GA-------------G---------AGGAAAC----TGAAGTATTCAAATTT-TTTAAAA-------T----AG------T---C-GGCATCGAT---------ATTATTTTTATA---ATTTTG---TCGA-TAC--GCATTTT-AAATAGCAC-TTGA-TA--------AAAATGTGAAAAATGAGCTGTAGTagt
gi|16 : gtgtG-G-A-TATTCCCAT-TTGTGAAAAGCGAGTGTCAATTCGTTAA--GGGATA----TTTT---------------------CACGT-C------TATCA--T-T-CTA--AATCACGTG-ACGTAAAATG-T------------------------------A-G-AAA--CT-TTTGAATTCCCGAT--GATCTG-CATA-GC--AC--AGTT--GA-------------GAGCTAATTAA----------TG---CA-TCAACTTA-TTCAAAA-------T----AGTCGGAAT---C-G------AT---------ATTATGTT
gi|17 : CATAAACAC-T-CGTTTGATGACAAAT-T-CTA--A-TCACGTG-ATGTAAAATG-TC-T---A-AG----------CAG---TTGAATG-AAAGTTT-TTTGAATTCCGAATTGAATGCT-CATATGT--GC--AGAT--GA-------------G---------AGCTAATTGGTTG---TGTTCAAATTGTTTTAAAA-------T----AG------T---CTG------A----------ATCGTTTT
gi|18 : TGAA-T-AAA--CC-TTTGAATTC-GGAT--GATCTT-CAAA-GCTGAT--AGTTCAGA-------------GTAAATTG--A----------TG---CATTCAAATTG-TTCAAGA-------TTATTAG------TTATC-A------AT---------ATCATTTTTATC---ATTTTA---TCGA-TAC--ATATTTT-GAATAGCAC-TTCATT---------AAAATGTGGAAAATGAGCTGTAGTactactacatttctaat
gi|19 : cACCCAGGGT-TTTGACAAA--T----GTTCGAAGAGATGTCT--TAAA----GTAGTA-CGAGATAC-ATGTACTACTCA---ATAAGCAAAATA-T--AATT--TACATG-GG---GATCA-TTATGA-CTTT--TTGATAAACC-AAGA-GAC-------------ACACGATCGCAA----GGCT-----------T---TAA-T--A--------AATTTT----ATCTGAAAA-CCTCAagt
gi|2 : TCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAG-TTTTACGGA--TTAT-GGGAGAAAATTGGT----TAGA----ATACACTCGAGATAC-A------ACTCAAA-ATGTGGAAAATA-T--AATT--TACGT-------------TTG------GT--TTGATAAACC-AAGA-GCC-AC-GAGT--CAGACACGTACGCAG----GGCTA----------T---TAAG---G---G--CTATTTTTTTTAATCTGAAAA-CGTGTCATGTTT--A----AATTCAAA-ACATTG--TTT---AGTCTAACA-------GAACAT--AAGAGTTTT-CATTTG--GAGTAATGAGTTATAAG-TG-CTTAAAATTCTTTAT------GC---------TATCCCCAT-TCTTGAAAAACGAGTGTGGATTCCTTAA--GGGGGA----TTTT--TATAAG-TTTCTACATAA-CACGTACGTTTGTTGTCA--T-T-CTA--AATCAC----ATGTAAAAT--TT-C---G-AA---A------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GAATTT-CATA-AC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---GTTTTA---TCTA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGTt
gi|20 : gTCGG-TCTTTACACGCATAAGCAGAGAAGGT-AAAC--TACA-GCATTTAGTCCAGAGAGAGGAAGCG-----TA-AAATGGA-TAGATCCAGAAA-TTTGACAGA--TTAT-GCAAGAAAAc
gi|21 : aattaatacttagccctatgaaatatacattgagactccttCCAAAT--GATCTT-CAAA-GA--GC--AGTT--GA-------------G---------AGCAATTGG--TG---AATTTAGATTG-TTCAA--------------AC------T---T-G------AC---------AGCA-TTCTATT---ACTTTA---TCGG-TG-----ATTTTAAAAAAACAA-ACGATT---------AAGAAGTGAAAAATGAGCTGTAGTATtcaag
gi|22 : tgacaatttgatgacac-TTTGAATTCCGGAT--GATCTG-CATA-GC--GC--AGTT--GATAGCTAATT----G---------A----------TG---CATTACAATTG-TTCACAA-------A----AG------T---C-GGAATCGAT---------ATTATGTTTATC---ACTTTA---TCGA-TAT--GTATTTT-AAATATCAC-TTG-----------------ATGAAAAATAAGCCGTAGT
gi|23 : gcg-------------G---------A----------TG---CATTCAAATTG-TTCAAAAGTCAT--T----A-------T---C-G------AT---------ATTAATGTTATC---ATTTTG---TCGA-TAT--GTATTTT-AAATAGCAC-TTGATT---------AAAATATGAAAAATGAGCTGTAGT
gi|24 : tgagagaaaatc-------------G---------A----------TG---CATTACAATTG-TTCACAA-------A----AG------T---C-GGAATCGAT---------ATTATGTTTATC---ACTTTA---TCGA-TAT--GTATTTT-AAATATCAC-TTG-----------------ATGAAAAATAAGCCGTAGT
gi|25 : gttgatagctaattTTGA-TCTTTACACACATGCAAACAGAGGGT-AAACATTTCA-GCAT---ATC---------GATGCA-----GA-CAATCGA-TATATCTAGAAT-TTATATAGA--TTAT-GGGAGAAGAt
gi|26 : ccgtcttC-AT-GAG------ACACGCACGAAG----AGCTA----------T---AAA-----------CT-TTTCC----CCCTGAAAAACGTCGCGTGTT-----------AAAAA-ACCCAG--TCA---GGTATATAG-------GGACATGCAAGGGCTTC-CGTT-A--GAATAATGATtaaaagat
gi|27 : TGCACACAAATGGT-AA-CATTTCA-GCAA---GTC---------GATACA-----TA-CA----------CCCATAATATTTTACAGA--TTTT-GGAAGAAAAGAGGC----TAGATAGAGTAGAA-CGAGATAC-A------ACTCATA-ATA
gi|28 : c-------------G---------A----------TG---CATTCATATTG-TTCAAAA-------T----TG------T---C-A------CTAACG-----ATGAGTTTTCTT---ATTTTA---TCGA-TAA--GAATCAT-AAGTAGCAC-T
gi|29 : aaatt------T---C-A------AT---------ATTATTTTTAAC---ATTTTG---TCGA-TAG--GTATTTC-AATTAAAACTTTGA-T---------AAGATATGAAATATGACGTGTAGTatatgagctgttatgtt
gi|3 : taT-AAACAAATCA-CCAT---GAC---------GTTGCT-----TA-CCATGGA-TATACTAAGAAT-TTTTACAGA--TCAT-GAGAGGGG-GAGGG----TAGA----GCATAA-CAAGATGC-A------ATTCATA----TGGAGAATG-TGGAAAT--CA----------------TTATGA-CCAT--TTGATAAAAC-AATA-GCC-AT-G-----C-GACAAGTACAGAG----GTATA----------T---TAAGT--AAATG--CTTTTTAT----ATCTGAAAA--ATCACAC-TTT--A----At
gi|3 : atgtA-ACATTC--CTT---AGTTTAAAA-------GGACATGCAAGG-TTTT-CGCT-G--GAATAATGATT-ATAAG-TG-CTTAA------TTGTAGGAG-GCA-AG-G-AATATTCCCAT-TCTTGAAAAGCTAATGTGGGCCCTTTAA--GGGGTATTTCTTTT--TATACA-TTTGTACACAA--AC---CGTCAGTTGTCA--T-T-CTG--AATTGCATG-ATGTAAAATG-T--C---G-AG---T------CAGA--TTGAA-G-GAA--C----TGAATTTCGATT--GATCTT-CATA-GC--GC--AGTG--GATAGCAAACG----G---------G----------TC---CATTCAAATTG-TTCAAAA-------T----AG------T---C-----------------------TTTTTG--------TTA---ACAAGTACATGTATCTT-CAAT------CTGA-T---------AAAAccaccaccccccacccccctctcccaataaacccaatgtaacattccttagtttaaaaggacatgcaaggttttcgctggaataatgattataagtgcttaattgtaggaggcaaggaatattcccattcttgaaaagctaatgtgggccctttaaggggtatttctttttatacatttgtacacaaaccgtcagttgtcattctgaattgcatgatgtaaaatgtcgagtcagattgaaggaactgaatttcgattgatcttcatagcgcagtggatagcaaacgggtccattcaaattgttcaaaatagtctttttgttaacaagtacatgtatcttcaatctgataaaa
gi|30 : atgttaaacaaatcaccatgacgttgcttaccatggatatactaagaatttttacagatcatgagagggggagggtagagcataacaagatgcaattcatatggagaatgtggaaatcattatgaccatttgataaaacaatagccatgcgacaagtacagaggtatattaagtaaatgctttttatatctgaaaaatcacactttaaccaccaccccccacccccctctcccaataaacccaatgt----AA------T---C-T------AT---------ATCAATTTTATC---ATTTTAATATCGA-TAC--GTTATTT-AAATAGTAC-TTGA-T---------GAAAGATGA
gi|31 : tcggTATTTTT----ATCTGAAAA-CGTCACATGTTgc
gi|4 : gactattaagtaagtcagtgctacatgTCGAATCT-TACACGCATGCGCACAGAGGGTAAAACATTTCG-GCAT---GTC---------GATGCAACATGTAGCAATGGACTATAACCAGAAT-TTTTACAGAATCTAT--GGAGAAAAGAGGCGCTATAGA--------AA-CGATATACAA------ACTCATAGATATGCAAAATATT--AATTTATACGTGTGG---GATA--TTATGA-CCG---TTAATAAACCAAAGAGGCCGATGGAGT--CAGGTACACAGGCA-----GGCTAAATAAAAACGT---TAAGTAAG---GTTCTA-TTTT----ATCCGAAAA-CGTCAAATGTTTTAA----AAATGAAA-ACATTG--TTT---AGTCTAA----------GACTTGGACGGGTTTT-CGTG-GACGAA-AATGATTTATAACGTGTCTTTAA-----TTATAAGAGCGCT-GG-A-A-TAATCCTAT-TCTTGAAAAGC-AGTATGGATTCTTTAA--GGGGTA----
gi|5 : caaaccaaaacaaaagcaacacaatttTCGA-TCTGTACACGCATGAGCACAGAGAGC-AAACATTTAG-GCAT---GTC---------GAAGCA-----TA-CAATGAA-TATACCCAGGAT-TTTTACAGA--TTA-------AAAAGAGGC----GAGC----GTAAAA-CGAGAAAC-A------ACTCATA-ATACGCAAAATA-T---ATT--TACGTG-GG---GATCA-TTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAGAGTCAGACATGCACGCAG----GGCTA----------T---TAAGT--AGGTG--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--ATAAGAAAAAAAACACACCA--ATT---AGTCTAAAA-------AGACCTTGAAGGGTTTT-Catcatcattctctcttacacagttg
gi|6 : tataaaaaataaaataaacgagtacccgccttAC-TCTTGAAACGCGAGTGTGAATTCTTCAA--GAGGTA----TTTTATTATA-AATTTCCACATAA-CATGT-C---TGTGGTCA--T-T-GTA--AATCACGTA-ATGTAAAATG-TC-C---G-AG---CTCGAGGCAGC--TTGAA-GAAAA--AT-TTTGAACTCCGGAT--GATATT-CATA-GT--GCAGAGTT--GAGAGCTAATCAATTG---------A----------TG---TAGTCAAATTG-TTCAAAA-------T----AG------T---C-GGA----ATCAATATTTAATTATTTCTATC---ATTTTA---TCGA-TAT--GTATTTT-AAATAGCAC-TTAA-TTGTCAGTTGAAAATATGAAAAATGAGTTGCAGTGT
gi|7 : TCGA-TCTTTAAACGTATGCGCACACACGAT-AAAC-TTTGGAGCAT---GT----------AAT--------TA-CA------TACACCCAGAAT-TTTCACAGA--TTTTTGGGAGAAAAGAGGT----TAGA----GTAGAA-CGAGACAC-A------ACTTAT---T-TGTAATATA-T--AATT--TTCGAA-GG---GGTCA-TTATGA-CCGT--TTGATAAACC-AAGA-GAC-A--GA-----AGACAAGCACGCAG----GGCTA----------TCAATAAGT--G---A---TATTTTT----ACCTGACAA-CGTCACATG-TT--A----AAATCAAA-GTACTG--
gi|8 : ttgacggcccatgccaaaaataaagttcccgccttTCGA-CCTGTACACGCATGCGCACAGAGGGT-AACCATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACACCCAGAAT-ATTTACAGA--TTAT-GGGAGAAAAGAAGC----TAGA----GTAGAA-CGAGCTAC-A------ACTCATA-ATACGCAAAATA-T--AATT--TACGTG-GG---GATCA-TTATGA-Cag
gi|8 : aaaactttctaatggccaatactaaaaaacaaacgagtcaccgccctATAC-A------ATTTA--------CAAATTA-T--AATT--TACGTG-GG---GATCA-TTATGA-CTGT--TTAGCCATTC-ATGA-GTC-AT-AAtcatgaatggctaaacagtcataatgatccccacgtaaattataatttgtaaattgtat
gi|9 : aaaactttctaatggccaatactaaaaaacaaacgagtcaccgcccttcgacctgtacacgcatgcgcacagagggtaaccatttcagcatgtcgatgcatacaatggatacacccagaatatttacagattatgggagaaaagaagctagagtagaacgagctacaactcataatacgcaaaatataatttacgtggggatca-----TTATGG-TCGT--TCGCTAAACC-AAGA-GCC-AT-GAG------ACGCGCACGTAGTCAAGGATA----------T---TTAAT--GAGTG--CCATTTTA----A-CTGAAAA-CGTCACATGTT---------AAAAAAC-ACATTG--TTT---AGTCTAAAA-------GGACATG-AAGGGTTTC-CGTT-G--GAATAAGGATTTATTAT-TA---TGAA-----TAATGTGAG-ACAAGG-G-A-GGTTTTCAT-TCTTGACAAGCGAGTGTGGATCCTTTAAAGAGGGTA----TTT
Alignments
lowQualScore : 111111111 1111 1111 333333 44444444444444444444444444444 11111111 11111 11111 22222222 111 66666666666666666666666666666666666 22222222 2222222222 9999999999999999999999999999999999 33333333333333333333333333333333333333333333 22222222222
lowQualScore : 4 5 3 1 3 555 333333333 88888 3 0 3 3 44 3 2222 7777 3 3 999999 1111 00 3 55 3 3 3 55 4 4 3 44 777777 9999 66666666666666666666666666666 8888 4 55555555 1 4 55 11111 00000 2 7 666 66666 0 5 5 88888888 5 5 77 111 4 4 1 00000000000000000000000000000000000 4 66666666 66 4 4 66 2 4 4 999999 4 0000000000 8888 3 3 55555 44 3 1 3 44 44 44 1111111111111111111111111111111111 555 2 44444444444444444444444444444444444444444444 555 555 3 666 3 3 11111111111
lowQualScore : . . . . . ... ......... ..... . . . . .. . .... .... . . ...... .... .. . .. . . . .. . . . .. ...... .... ............................. .... . ........ . . .. ..... ..... . . ... ..... . . . ........ . . .. ... . . . ................................... . ........ .. . . .. . . . ...... . .......... .... . . ..... .. . . . .. .. .. .................................. ... . ............................................ ... ... . ... . . ...........
lowQualScore : 0 0 3 2 3 888 333333333 33333 3 4 3 1 22 1 7777 7777 6 3 666666 0000 77 6 00 6 3 3 00 0 0 6 88 111111 4444 99999999999999999999999999999 5555 0 11111111 0 0 55 11111 00000 5 3 000 99999 1 0 0 00000000 2 0 22 444 4 6 1 11111111111111111111111111111111111 4 99999999 11 4 4 11 9 4 0 999999 0 9999999999 3333 6 6 66666 22 1 0 1 22 22 22 2222222222222222222222222222222222 000 9 88888888888888888888888888888888888888888888 444 444 1 888 1 1 77777777777
consensus : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAAATA-TAATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------T---TAAGT--G---G--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT-----AGTCTAAAA-----GGACATGGAAGGGTTTT-CGTT-G--GAATAATGATTTATAAT-TG-CTTAAA-----TTATAAGAG-GC-AGGG-A-TATTCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAA--GGGGTA----TTTT--TATA-G-TTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TC-C---G-AG---T------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---ATTTTA---TCGA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGT
Reference ( family-998 ) : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAAATA-TAATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------T---TAAGT--G---G--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT-----AGTCTAAAA-----GGACATGGAAGGGTTTT-CGTT-G--GAATAATGATTTATAAT-TG-CTTAAA-----TTATAAGAG-GC-AGGG-A-TATTCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAA--GGGGTA----TTTT--TATA-G-TTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TC-C---G-AG---T------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---ATTTTA---TCGA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGT
gi|1 : TCCA-TCTTTACACGCATGCGTACAGATGGT-AAACATTGCA-GCAT---GTC---------GAAGAG-----TG-CAGTAGA-TATACCCATATT-TTCCACAGA--TTAT-GGAAGAAAAGAGGT----TAGA----ATAGAA-CGAGATAC-A------ACTCATA--TAC--AAAATA-TAATT--TACGTG-GG-AT-CATTATGA-CCGT--ATGATAAACC-AAGA-GCC-AG-GAG------ACACGCACGTAG----GGCT-----------C---TAAGTTAGT--G--CCATTTTT----ATCTGAAAA-AGTCTCATGTTT--A----AAAAAAAA-ACATGGGACATGGAAGAGTAAAAAAACATGGGACGTGGAAGAGTTTT-CGTT-G----------------AAT-TG-CTTGA------CTATAAGAG-GC-AGGA-AATATTCCCAT-TCTTGAAAAGCTAGTGTG-------TA---------------TT--TA---------TACACAA-CA----CGTCTGTTGTCA--T-T-CAA--AATCACGTA-ATGTGAAGTG-TC-C---G-AG---T------CAGC--ATGTG-G-ACA--C---------------T--GATCTT-CAAA-GC--GC--ACTT--GAGAGCTAATT----G---------A----------TG---CAATCAAGGTA-TTCAACATACTATGT----AG------T---T-G------GT---------ATTATTTTTTTTTTGATTTTG---TCTA-TGC--GTAGTTT-AAATAGTAT-TTGA-T---------TAAATATGAAAAATGAGCTGTAG
gi|10 : atactttttgacatcccatacaaagagacttccccggcttAAAA-----ACACATGGAAGGGTTTC-CGCT-
gi|10 : TTTC-CGTT-G--GAATAATACTTTATAAT-TA-CTT-GA-----TTATAAGAG-GC-GGGA-A-tttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggatatataagtttctacataacacgtttattgtcattctaaatcacgtgatgtaaaatgttgcatggagccgtcagcatgaagaaacttttgaattccggatgtttttcaaagcgcagtggagagaaatttgatgcattgaaattgttcacaatagtcggtatcgatat
gi|10 : aaaaacacatggaagggtttccgcttttat--TATAAG-TTTCTACATAA-CACGT-T---TATTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TTGCATGG-AGCCGT------CAGC--ATGAA-G-AAA--CT-TTTGAATTCCGGAT--GTTTTT-CAAA-GC--GC--AGTG--GAGAGAAATTT----G---------A----------TG---CATTGAAATTG-TTCACAA-------T----AG------T---C-G------GT---------ATtacggatatataagtttctacataacacgtttattgtcattctaaatcacgtgatgtaaaatgttgcatggagccgtcagcatgaagaaacttttgaattccggatgtttttcaaagcgcagtggagagaaatttgatgcattgaaattgttcacaatagtcggtatcgatat
gi|11 : aaaaacacatggaagggtttccgcttttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggata-ACGTTG--TTT-----AGTCTATAA-----GCACGTGGAATGACTTTGCG---G--G--TAATGGTTTATAAT-TG-CTTA-------TTCTA-GAG-GC-AGGGTA-TATTCCCATATCTTGAAA-GCGAGTGTG---------------------------------G-TTTCTAC-TAA-CA----CATCTGCTGTCA--TATACTAATAAT-ACTTGAATGTAAAATATTC-C---GAAG---T------CAGTCATTGAA-A-AAA--CTCTTTGAATTCC-GAT--GATCTTGTACA-GC--GC--AATT--Gcgatat
gi|12 : at--A----AAATAAAA-ACGTTG--TTT-----AGTCTATAA-----GGACATGGAATGACTTTGCG---G--G--TAATGGTTTATAAT-TG-CTTAA------TTATAAGAG-GC-AGGGTA-TATTCCCAT-TCTTGAAA-GCGAGTGTGG----------------------------------TTTCTACATAA-CACAT-C---TGCTGTCA--T-T-CTA--AATCACTTG-ATGTAAAATA-TC-C---G-AG---T------CAGC--TTGAA-A-AAA--CT-TTTGAATTCCGGAT--GATCTT-TATA-GC--GC--AATT--GA-------------cggacggttcatttacaccatttcaaga
gi|13 : TCGA-TCTGTACACGCAAGCGCACAGAGGGT-AAACATTTCG-GCAT---GTT---------GATGCA-----TA-CAATGGA-TATACCGAGAAT-TTTTACAGA--TTAT-GGGAGAATAGAGAC----TAAA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAATTA-TAATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATA-----AAGG-GCC-AT-GAcacggttatttacaccatttcaaga
gi|14 : cgcttcggcctatacaaaacaggggaaaaaaccgagtccccacctTCGA-CCTG-ACACGCATGCGCACAGAGGGT-AA-CATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACA-CCAG-AT-ATTTACAGA--TTAT-GGGAGAAAAGAAGC----TAG-----GTAGAA-CGAGCTAA-C------ACTCAT--ATACGCAAAATA-TAATT--TACGTG-GGGATCCATTATGATCCATAAATGGTAAACatgtta
gi|15 : ggccaatactaaaaaacaaacgagtcggccctAATG-TC-T---A-AG---T------CTGC--ATGAA-G-AAA--AT-TTTGAATTCCGACT--GACCTT-CAAT-GC--GC--TGTT--GA-------------G---------AGGAAAC----TGAAGTATTCAAATTT-TTTAAAA-------T----AG------T---C-GGCATCGAT---------ATTATTTTTATA---ATTTTG---TCGA-TAC--GCATTTT-AAATAGCAC-TTGA-TA--------AAAATGTGAAAAATGAGCTGTAGTagt
gi|16 : gtgtGG-A-TATTCCCAT-TTGTGAAAAGCGAGTGTCAATTCGTTAA--GGGATA----TTTT---------------------CACGT-C------TATCA--T-T-CTA--AATCACGTG-ACGTAAAATG-T------------------------------A-G-AAA--CT-TTTGAATTCCCGAT--GATCTG-CATA-GC--AC--AGTT--GA-------------GAGCTAATTAA----------TG---CA-TCAACTTA-TTCAAAA-------T----AGTCGGAAT---C-G------AT---------ATTATGTT
gi|17 : CATAAACAC-T-CGTTTGATGACAAAT-T-CTA--A-TCACGTG-ATGTAAAATG-TC-T---A-AG----------CAG---TTGAATG-AAAGTTT-TTTGAATTCCGAATTGAATGCT-CATATGT--GC--AGAT--GA-------------G---------AGCTAATTGGTTG---TGTTCAAATTGTTTTAAAA-------T----AG------T---CTG------A----------ATCGTTTT
gi|18 : TGAA-T-AAA--CC-TTTGAATTC-GGAT--GATCTT-CAAA-GCTGAT--AGTTCAGA-------------GTAAATTG--A----------TG---CATTCAAATTG-TTCAAGA-------TTATTAG------TTATC-A------AT---------ATCATTTTTATC---ATTTTA---TCGA-TAC--ATATTTT-GAATAGCAC-TTCATT---------AAAATGTGGAAAATGAGCTGTAGTactactacatttctaat
gi|19 : cACCCAGGGT-TTTGACAAA--T----GTTCGAAGAGATGTCT--TAAA----GTAGTA-CGAGATAC-ATGTACTACTCA---ATAAGCAAAATA-TAATT--TACATG-GGGAT-CATTATGA-CTTT--TTGATAAACC-AAGA-GAC-------------ACACGATCGCAA----GGCT-----------T---TAA-T--A--------AATTTT----ATCTGAAAA-CCTCAagt
gi|2 : TCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAG-TTTTACGGA--TTAT-GGGAGAAAATTGGT----TAGA----ATACACTCGAGATAC-A------ACTCAAA-ATGTGGAAAATA-TAATT--TACGT----------TTG------GT--TTGATAAACC-AAGA-GCC-AC-GAGT--CAGACACGTACGCAG----GGCTA----------T---TAAG---G---G--CTATTTTTTTTAATCTGAAAA-CGTGTCATGTTT--A----AATTCAAA-ACATTG--TTT-----AGTCTAACA-----GAACAT--AAGAGTTTT-CATTTG--GAGTAATGAGTTATAAG-TG-CTTAAAATTCTTTAT------GC--------TATCCCCAT-TCTTGAAAAACGAGTGTGGATTCCTTAA--GGGGGA----TTTT--TATAAG-TTTCTACATAA-CACGTACGTTTGTTGTCA--T-T-CTA--AATCAC----ATGTAAAAT--TT-C---G-AA---A------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GAATTT-CATA-AC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---GTTTTA---TCTA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGTt
gi|20 : gTCGG-TCTTTACACGCATAAGCAGAGAAGGT-AAAC--TACA-GCATTTAGTCCAGAGAGAGGAAGCG-----TA-AAATGGA-TAGATCCAGAAA-TTTGACAGA--TTAT-GCAAGAAAAc
gi|21 : aattaatacttagccctatgaaatatacattgagactccttCCAAAT--GATCTT-CAAA-GA--GC--AGTT--GA-------------G---------AGCAATTGG--TG---AATTTAGATTG-TTCAA--------------AC------T---T-G------AC---------AGCA-TTCTATT---ACTTTA---TCGG-TG-----ATTTTAAAAAAACAA-ACGATT---------AAGAAGTGAAAAATGAGCTGTAGTATtcaag
gi|22 : tgacaatttgatgacac-TTTGAATTCCGGAT--GATCTG-CATA-GC--GC--AGTT--GATAGCTAATT----G---------A----------TG---CATTACAATTG-TTCACAA-------A----AG------T---C-GGAATCGAT---------ATTATGTTTATC---ACTTTA---TCGA-TAT--GTATTTT-AAATATCAC-TTG-----------------ATGAAAAATAAGCCGTAGT
gi|23 : gcg-------------G---------A----------TG---CATTCAAATTG-TTCAAAAGTCAT--T----A-------T---C-G------AT---------ATTAATGTTATC---ATTTTG---TCGA-TAT--GTATTTT-AAATAGCAC-TTGATT---------AAAATATGAAAAATGAGCTGTAGT
gi|24 : tgagagaaaatc-------------G---------A----------TG---CATTACAATTG-TTCACAA-------A----AG------T---C-GGAATCGAT---------ATTATGTTTATC---ACTTTA---TCGA-TAT--GTATTTT-AAATATCAC-TTG-----------------ATGAAAAATAAGCCGTAGT
gi|25 : gttgatagctaattTTGA-TCTTTACACACATGCAAACAGAGGGT-AAACATTTCA-GCAT---ATC---------GATGCA-----GA-CAATCGA-TATATCTAGAAT-TTATATAGA--TTAT-GGGAGAAGAt
gi|26 : ccgtcttC-AT-GAG------ACACGCACGAAG----AGCTA----------T---AAA-----------CT-TTTCC----CCCTGAAAAACGTCGCGTGTT-----------AAAAA-ACCCAG--TCA-----GGTATATAG-----GGACATGCAAGGGCTTC-CGTT-A--GAATAATGATtaaaagat
gi|27 : TGCACACAAATGGT-AA-CATTTCA-GCAA---GTC---------GATACA-----TA-CA----------CCCATAATATTTTACAGA--TTTT-GGAAGAAAAGAGGC----TAGATAGAGTAGAA-CGAGATAC-A------ACTCATA-ATA
gi|28 : c-------------G---------A----------TG---CATTCATATTG-TTCAAAA-------T----TG------T---C-A------CTAACG-----ATGAGTTTTCTT---ATTTTA---TCGA-TAA--GAATCAT-AAGTAGCAC-T
gi|29 : aaatt------T---C-A------AT---------ATTATTTTTAAC---ATTTTG---TCGA-TAG--GTATTTC-AATTAAAACTTTGA-T---------AAGATATGAAATATGACGTGTAGTatatgagctgttatgtt
gi|3 : taT-AAACAAATCA-CCAT---GAC---------GTTGCT-----TA-CCATGGA-TATACTAAGAAT-TTTTACAGA--TCAT-GAGAGGGG-GAGGG----TAGA----GCATAA-CAAGATGC-A------ATTCATA----TGGAGAAT------------GTG-GAAAT-CATTATGA-CCAT--TTGATAAAAC-AATA-GCC-AT---G---C-GACAAGTACAGAG----GTATA----------T---TAAGT--AAATG--CTTTTTAT----ATCTGAAAA--ATCACAC-TTT--A----At
gi|3 : atgtA-ACATTC--CTT-----AGTTTAAAA-----GGACATGCAAGG-TTTT-CGCT-G--GAATAATGATT-ATAAG-TG-CTTAA------TTGTAGGAG-GC-AAGG-AATATTCCCAT-TCTTGAAAAGCTAATGTGGGCCCTTTAA--GGGGTATTTCTTTT--TATACA-TTTGTACACAA--AC---CGTCAGTTGTCA--T-T-CTG--AATTGCATG-ATGTAAAATG-T--C---G-AG---T------CAGA--TTGAA-G-GAA--C----TGAATTTCGATT--GATCTT-CATA-GC--GC--AGTG--GATAGCAAACG----G---------G----------TC---CATTCAAATTG-TTCAAAA-------T----AG------T---C-----------------------TTTTTG--------TTA---ACAAGTACATGTATCTT-CAAT------CTGA-T---------AAAAccaccaccccccacccccctctcccaataaacccaatgtaacattccttagtttaaaaggacatgcaaggttttcgctggaataatgattataagtgcttaattgtaggaggcaaggaatattcccattcttgaaaagctaatgtgggccctttaaggggtatttctttttatacatttgtacacaaaccgtcagttgtcattctgaattgcatgatgtaaaatgtcgagtcagattgaaggaactgaatttcgattgatcttcatagcgcagtggatagcaaacgggtccattcaaattgttcaaaatagtctttttgttaacaagtacatgtatcttcaatctgataaaa
gi|30 : atgttaaacaaatcaccatgacgttgcttaccatggatatactaagaatttttacagatcatgagagggggagggtagagcataacaagatgcaattcatatggagaatgtggaaatcattatgaccatttgataaaacaatagccatgcgacaagtacagaggtatattaagtaaatgctttttatatctgaaaaatcacactttaaccaccaccccccacccccctctcccaataaacccaatgt----AA------T---C-T------AT---------ATCAATTTTATC---ATTTTAATATCGA-TAC--GTTATTT-AAATAGTAC-TTGA-T---------GAAAGATGA
gi|31 : tcggTATTTTT----ATCTGAAAA-CGTCACATGTTgc
gi|4 : gactattaagtaagtcagtgctacatgTCGAATCT-TACACGCATGCGCACAGAGGGTAAAACATTTCG-GCAT---GTC---------GATGCAACATGTAGCAATGGACTATAACCAGAAT-TTTTACAGAATCTAT--GGAGAAAAGAGGCGCTATAGA--------AA-CGATATACAA------ACTCATAGATATGCAAAATATTAATTTATACGTGTGGGAT--ATTATGA-CCG---TTAATAAACCAAAGAGGCCGATGGAGT--CAGGTACACAGGCA-----GGCTAAATAAAAACGT---TAAGTAAG---GTTCTA-TTTT----ATCCGAAAA-CGTCAAATGTTTTAA----AAATGAAA-ACATTG--TTT-----AGTCTAA--------GACTTGGACGGGTTTT-CGTG-GACGAA-AATGATTTATAACGTGTCTTTAA-----TTATAAGAGCGC-TGGA-A-TAATCCTAT-TCTTGAAAAGC-AGTATGGATTCTTTAA--GGGGTA----
gi|5 : caaaccaaaacaaaagcaacacaatttTCGA-TCTGTACACGCATGAGCACAGAGAGC-AAACATTTAG-GCAT---GTC---------GAAGCA-----TA-CAATGAA-TATACCCAGGAT-TTTTACAGA--TTA-------AAAAGAGGC----GAGC----GTAAAA-CGAGAAAC-A------ACTCATA-ATACGCAAAATA-T-ATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAGAGTCAGACATGCACGCAG----GGCTA----------T---TAAGT--AGGTG--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--ATAAGAAAAAAAACACACCA--ATT-----AGTCTAAAA-----AGACCTTGAAGGGTTTT-Catcatcattctctcttacacagttg
gi|6 : tataaaaaataaaataaacgagtacccgccttAC-TCTTGAAACGCGAGTGTGAATTCTTCAA--GAGGTA----TTTTATTATA-AATTTCCACATAA-CATGT-C---TGTGGTCA--T-T-GTA--AATCACGTA-ATGTAAAATG-TC-C---G-AG---CTCGAGGCAGC--TTGAA-GAAAA--AT-TTTGAACTCCGGAT--GATATT-CATA-GT--GCAGAGTT--GAGAGCTAATCAATTG---------A----------TG---TAGTCAAATTG-TTCAAAA-------T----AG------T---C-GGA----ATCAATATTTAATTATTTCTATC---ATTTTA---TCGA-TAT--GTATTTT-AAATAGCAC-TTAA-TTGTCAGTTGAAAATATGAAAAATGAGTTGCAGTGT
gi|7 : TCGA-TCTTTAAACGTATGCGCACACACGAT-AAAC-TTTGGAGCAT---GT----------AAT--------TA-CA------TACACCCAGAAT-TTTCACAGA--TTTTTGGGAGAAAAGAGGT----TAGA----GTAGAA-CGAGACAC-A------ACTTAT---T-TGTAATATA-TAATT--TTCGAA-GGGGT-CATTATGA-CCGT--TTGATAAACC-AAGA-GAC-A--GA-----AGACAAGCACGCAG----GGCTA----------TCAATAAGT--G---A---TATTTTT----ACCTGACAA-CGTCACATG-TT--A----AAATCAAA-GTACTG--
gi|8 : ttgacggcccatgccaaaaataaagttcccgccttTCGA-CCTGTACACGCATGCGCACAGAGGGT-AACCATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACACCCAGAAT-ATTTACAGA--TTAT-GGGAGAAAAGAAGC----TAGA----GTAGAA-CGAGCTAC-A------ACTCATA-ATACGCAAAATA-TAATT--TACGTG-GGGAT-CATTATGA-Cag
gi|8 : aaaactttctaatggccaatactaaaaaacaaacgagtcaccgccctATAC-A------ATTTA--------CAAATTA-TAATT--TACGTG-GGGAT-CATTATGA-CTGT--TTAGCCATTC-ATGA-GTC-AT-AAtcatgaatggctaaacagtcataatgatccccacgtaaattataatttgtaaattgtat
gi|9 : aaaactttctaatggccaatactaaaaaacaaacgagtcaccgcccttcgacctgtacacgcatgcgcacagagggtaaccatttcagcatgtcgatgcatacaatggatacacccagaatatttacagattatgggagaaaagaagctagagtagaacgagctacaactcataatacgcaaaatataatttacgtggggatca-CATTATGG-TCGT--TCGCTAAACC-AAGA-GCC-AT-GAG------ACGCGCACGTAGTCAAGGATA----------T---TTAAT--GAGTG--CCATTTTA----A-CTGAAAA-CGTCACATGTT---------AAAAAAC-ACATTG--TTT-----AGTCTAAAA-----GGACAT-GAAGGGTTTC-CGTT-G--GAATAAGGATTTATTAT-TA---TGAA-----TAATGTGAG-ACAAGGG-A-GGTTTTCAT-TCTTGACAAGCGAGTGTGGATCCTTTAAAGAGGGTA----TTT
Alignments
lowQualScore : 111111111 1111 1111 333333 44444444444444444444444444444 11111111 11111 11111 22222222 111 66666666666666666666666666666666666 22222222 2222222222 9999999999999999999999999999999999 33333333333333333333333333333333333333333333 22222222222
lowQualScore : 4 5 3 1 3 555 333333333 88888 3 0 3 3 44 3 2222 7777 3 3 999999 1111 00 3 55 3 3 3 55 4 4 3 44 777777 9999 66666666666666666666666666666 8888 4 55555555 1 4 55 11111 00000 2 7 666 66666 0 5 5 88888888 5 5 77 111 4 4 1 00000000000000000000000000000000000 4 66666666 66 4 4 66 2 4 4 999999 4 0000000000 8888 3 3 55555 44 3 1 3 44 44 44 1111111111111111111111111111111111 555 2 44444444444444444444444444444444444444444444 555 555 3 666 3 3 11111111111
lowQualScore : . . . . . ... ......... ..... . . . . .. . .... .... . . ...... .... .. . .. . . . .. . . . .. ...... .... ............................. .... . ........ . . .. ..... ..... . . ... ..... . . . ........ . . .. ... . . . ................................... . ........ .. . . .. . . . ...... . .......... .... . . ..... .. . . . .. .. .. .................................. ... . ............................................ ... ... . ... . . ...........
lowQualScore : 0 0 3 2 3 888 333333333 33333 3 4 3 1 22 1 7777 7777 6 3 666666 0000 77 6 00 6 3 3 00 0 0 6 88 111111 4444 99999999999999999999999999999 5555 0 11111111 0 0 55 11111 00000 5 3 000 99999 1 0 0 00000000 2 0 22 444 4 6 1 11111111111111111111111111111111111 4 99999999 11 4 4 11 9 4 0 999999 0 9999999999 3333 6 6 66666 22 1 0 1 22 22 22 2222222222222222222222222222222222 000 9 88888888888888888888888888888888888888888888 444 444 1 888 1 1 77777777777
consensus : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAAATA-TAATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------T---TAAGT--G---G--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT-----AGTCTAAAA-----GGACATGGAAGGGTTTT-CGTT-G--GAATAATGATTTATAAT-TG-CTTAAA-----TTATAAGAG-GC-AGGG-A-TATTCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAA--GGGGTA----TTTT--TATA-G-TTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TC-C---G-AG---T------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---ATTTTA---TCGA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGT
Reference ( family-998 ) : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAAATA-TAATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------T---TAAGT--G---G--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT-----AGTCTAAAA-----GGACATGGAAGGGTTTT-CGTT-G--GAATAATGATTTATAAT-TG-CTTAAA-----TTATAAGAG-GC-AGGG-A-TATTCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAA--GGGGTA----TTTT--TATA-G-TTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TC-C---G-AG---T------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---ATTTTA---TCGA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGT
gi|1 : TCCA-TCTTTACACGCATGCGTACAGATGGT-AAACATTGCA-GCAT---GTC---------GAAGAG-----TG-CAGTAGA-TATACCCATATT-TTCCACAGA--TTAT-GGAAGAAAAGAGGT----TAGA----ATAGAA-CGAGATAC-A------ACTCATA--TAC--AAAATA-TAATT--TACGTG-GG-AT-CATTATGA-CCGT--ATGATAAACC-AAGA-GCC-AG-GAG------ACACGCACGTAG----GGCT-----------C---TAAGTTAGT--G--CCATTTTT----ATCTGAAAA-AGTCTCATGTTT--A----AAAAAAAA-ACATGGGACATGGAAGAGTAAAAAAACATGGGACGTGGAAGAGTTTT-CGTT-G----------------AAT-TG-CTTGA------CTATAAGAG-GC-AGGA-AATATTCCCAT-TCTTGAAAAGCTAGTGTG-------TA---------------TT--TA---------TACACAA-CA----CGTCTGTTGTCA--T-T-CAA--AATCACGTA-ATGTGAAGTG-TC-C---G-AG---T------CAGC--ATGTG-G-ACA--C---------------T--GATCTT-CAAA-GC--GC--ACTT--GAGAGCTAATT----G---------A----------TG---CAATCAAGGTA-TTCAACATACTATGT----AG------T---T-G------GT---------ATTATTTTTTTTTTGATTTTG---TCTA-TGC--GTAGTTT-AAATAGTAT-TTGA-T---------TAAATATGAAAAATGAGCTGTAG
gi|10 : atactttttgacatcccatacaaagagacttccccggcttAAAA-----ACACATGGAAGGGTTTC-CGCT-
gi|10 : TTTC-CGTT-G--GAATAATACTTTATAAT-TA-CTT-GA-----TTATAAGAG-GC-GGGA-A-tttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggatatataagtttctacataacacgtttattgtcattctaaatcacgtgatgtaaaatgttgcatggagccgtcagcatgaagaaacttttgaattccggatgtttttcaaagcgcagtggagagaaatttgatgcattgaaattgttcacaatagtcggtatcgatat
gi|10 : aaaaacacatggaagggtttccgcttttat--TATAAG-TTTCTACATAA-CACGT-T---TATTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TTGCATGG-AGCCGT------CAGC--ATGAA-G-AAA--CT-TTTGAATTCCGGAT--GTTTTT-CAAA-GC--GC--AGTG--GAGAGAAATTT----G---------A----------TG---CATTGAAATTG-TTCACAA-------T----AG------T---C-G------GT---------ATtacggatatataagtttctacataacacgtttattgtcattctaaatcacgtgatgtaaaatgttgcatggagccgtcagcatgaagaaacttttgaattccggatgtttttcaaagcgcagtggagagaaatttgatgcattgaaattgttcacaatagtcggtatcgatat
gi|11 : aaaaacacatggaagggtttccgcttttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggata-ACGTTG--TTT-----AGTCTATAA-----GCACGTGGAATGACTTTGCG---G--G--TAATGGTTTATAAT-TG-CTTA-------TTCTA-GAG-GC-AGGGTA-TATTCCCATATCTTGAAA-GCGAGTGTG---------------------------------G-TTTCTAC-TAA-CA----CATCTGCTGTCA--TATACTAATAAT-ACTTGAATGTAAAATATTC-C---GAAG---T------CAGTCATTGAA-A-AAA--CTCTTTGAATTCC-GAT--GATCTTGTACA-GC--GC--AATT--Gcgatat
gi|12 : at--A----AAATAAAA-ACGTTG--TTT-----AGTCTATAA-----GGACATGGAATGACTTTGCG---G--G--TAATGGTTTATAAT-TG-CTTAA------TTATAAGAG-GC-AGGGTA-TATTCCCAT-TCTTGAAA-GCGAGTGTGG----------------------------------TTTCTACATAA-CACAT-C---TGCTGTCA--T-T-CTA--AATCACTTG-ATGTAAAATA-TC-C---G-AG---T------CAGC--TTGAA-A-AAA--CT-TTTGAATTCCGGAT--GATCTT-TATA-GC--GC--AATT--GA-------------cggacggttcatttacaccatttcaaga
gi|13 : TCGA-TCTGTACACGCAAGCGCACAGAGGGT-AAACATTTCG-GCAT---GTT---------GATGCA-----TA-CAATGGA-TATACCGAGAAT-TTTTACAGA--TTAT-GGGAGAATAGAGAC----TAAA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAATTA-TAATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATA-----AAGG-GCC-AT-GAcacggttatttacaccatttcaaga
gi|14 : cgcttcggcctatacaaaacaggggaaaaaaccgagtccccacctTCGA-CCTG-ACACGCATGCGCACAGAGGGT-AA-CATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACA-CCAG-AT-ATTTACAGA--TTAT-GGGAGAAAAGAAGC----TAG-----GTAGAA-CGAGCTAA-C------ACTCAT--ATACGCAAAATA-TAATT--TACGTG-GGGATCCATTATGATCCATAAATGGTAAACatgtta
gi|15 : ggccaatactaaaaaacaaacgagtcggccctAATG-TC-T---A-AG---T------CTGC--ATGAA-G-AAA--AT-TTTGAATTCCGACT--GACCTT-CAAT-GC--GC--TGTT--GA-------------G---------AGGAAAC----TGAAGTATTCAAATTT-TTTAAAA-------T----AG------T---C-GGCATCGAT---------ATTATTTTTATA---ATTTTG---TCGA-TAC--GCATTTT-AAATAGCAC-TTGA-TA--------AAAATGTGAAAAATGAGCTGTAGTagt
gi|16 : gtgtGG-A-TATTCCCAT-TTGTGAAAAGCGAGTGTCAATTCGTTAA--GGGATA----TTTT---------------------CACGT-C------TATCA--T-T-CTA--AATCACGTG-ACGTAAAATG-T------------------------------A-G-AAA--CT-TTTGAATTCCCGAT--GATCTG-CATA-GC--AC--AGTT--GA-------------GAGCTAATTAA----------TG---CA-TCAACTTA-TTCAAAA-------T----AGTCGGAAT---C-G------AT---------ATTATGTT
gi|17 : CATAAACAC-T-CGTTTGATGACAAAT-T-CTA--A-TCACGTG-ATGTAAAATG-TC-T---A-AG----------CAG---TTGAATG-AAAGTTT-TTTGAATTCCGAATTGAATGCT-CATATGT--GC--AGAT--GA-------------G---------AGCTAATTGGTTG---TGTTCAAATTGTTTTAAAA-------T----AG------T---CTG------A----------ATCGTTTT
gi|18 : TGAA-T-AAA--CC-TTTGAATTC-GGAT--GATCTT-CAAA-GCTGAT--AGTTCAGA-------------GTAAATTG--A----------TG---CATTCAAATTG-TTCAAGA-------TTATTAG------TTATC-A------AT---------ATCATTTTTATC---ATTTTA---TCGA-TAC--ATATTTT-GAATAGCAC-TTCATT---------AAAATGTGGAAAATGAGCTGTAGTactactacatttctaat
gi|19 : cACCCAGGGT-TTTGACAAA--T----GTTCGAAGAGATGTCT--TAAA----GTAGTA-CGAGATAC-ATGTACTACTCA---ATAAGCAAAATA-TAATT--TACATG-GGGAT-CATTATGA-CTTT--TTGATAAACC-AAGA-GAC-------------ACACGATCGCAA----GGCT-----------T---TAA-T--A--------AATTTT----ATCTGAAAA-CCTCAagt
gi|2 : TCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAG-TTTTACGGA--TTAT-GGGAGAAAATTGGT----TAGA----ATACACTCGAGATAC-A------ACTCAAA-ATGTGGAAAATA-TAATT--TACGT----------TTG------GT--TTGATAAACC-AAGA-GCC-AC-GAGT--CAGACACGTACGCAG----GGCTA----------T---TAAG---G---G--CTATTTTTTTTAATCTGAAAA-CGTGTCATGTTT--A----AATTCAAA-ACATTG--TTT-----AGTCTAACA-----GAACAT--AAGAGTTTT-CATTTG--GAGTAATGAGTTATAAG-TG-CTTAAAATTCTTTAT------GC--------TATCCCCAT-TCTTGAAAAACGAGTGTGGATTCCTTAA--GGGGGA----TTTT--TATAAG-TTTCTACATAA-CACGTACGTTTGTTGTCA--T-T-CTA--AATCAC----ATGTAAAAT--TT-C---G-AA---A------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GAATTT-CATA-AC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---GTTTTA---TCTA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGTt
gi|20 : gTCGG-TCTTTACACGCATAAGCAGAGAAGGT-AAAC--TACA-GCATTTAGTCCAGAGAGAGGAAGCG-----TA-AAATGGA-TAGATCCAGAAA-TTTGACAGA--TTAT-GCAAGAAAAc
gi|21 : aattaatacttagccctatgaaatatacattgagactccttCCAAAT--GATCTT-CAAA-GA--GC--AGTT--GA-------------G---------AGCAATTGG--TG---AATTTAGATTG-TTCAA--------------AC------T---T-G------AC---------AGCA-TTCTATT---ACTTTA---TCGG-TG-----ATTTTAAAAAAACAA-ACGATT---------AAGAAGTGAAAAATGAGCTGTAGTATtcaag
gi|22 : tgacaatttgatgacac-TTTGAATTCCGGAT--GATCTG-CATA-GC--GC--AGTT--GATAGCTAATT----G---------A----------TG---CATTACAATTG-TTCACAA-------A----AG------T---C-GGAATCGAT---------ATTATGTTTATC---ACTTTA---TCGA-TAT--GTATTTT-AAATATCAC-TTG-----------------ATGAAAAATAAGCCGTAGT
gi|23 : gcg-------------G---------A----------TG---CATTCAAATTG-TTCAAAAGTCAT--T----A-------T---C-G------AT---------ATTAATGTTATC---ATTTTG---TCGA-TAT--GTATTTT-AAATAGCAC-TTGATT---------AAAATATGAAAAATGAGCTGTAGT
gi|24 : tgagagaaaatc-------------G---------A----------TG---CATTACAATTG-TTCACAA-------A----AG------T---C-GGAATCGAT---------ATTATGTTTATC---ACTTTA---TCGA-TAT--GTATTTT-AAATATCAC-TTG-----------------ATGAAAAATAAGCCGTAGT
gi|25 : gttgatagctaattTTGA-TCTTTACACACATGCAAACAGAGGGT-AAACATTTCA-GCAT---ATC---------GATGCA-----GA-CAATCGA-TATATCTAGAAT-TTATATAGA--TTAT-GGGAGAAGAt
gi|26 : ccgtcttC-AT-GAG------ACACGCACGAAG----AGCTA----------T---AAA-----------CT-TTTCC----CCCTGAAAAACGTCGCGTGTT-----------AAAAA-ACCCAG--TCA-----GGTATATAG-----GGACATGCAAGGGCTTC-CGTT-A--GAATAATGATtaaaagat
gi|27 : TGCACACAAATGGT-AA-CATTTCA-GCAA---GTC---------GATACA-----TA-CA----------CCCATAATATTTTACAGA--TTTT-GGAAGAAAAGAGGC----TAGATAGAGTAGAA-CGAGATAC-A------ACTCATA-ATA
gi|28 : c-------------G---------A----------TG---CATTCATATTG-TTCAAAA-------T----TG------T---C-A------CTAACG-----ATGAGTTTTCTT---ATTTTA---TCGA-TAA--GAATCAT-AAGTAGCAC-T
gi|29 : aaatt------T---C-A------AT---------ATTATTTTTAAC---ATTTTG---TCGA-TAG--GTATTTC-AATTAAAACTTTGA-T---------AAGATATGAAATATGACGTGTAGTatatgagctgttatgtt
gi|3 : taT-AAACAAATCA-CCAT---GAC---------GTTGCT-----TA-CCATGGA-TATACTAAGAAT-TTTTACAGA--TCAT-GAGAGGGG-GAGGG----TAGA----GCATAA-CAAGATGC-A------ATTCATA----TGGAGAAT------------GTG-GAAAT-CATTATGA-CCAT--TTGATAAAAC-AATA-GCC-AT---G---C-GACAAGTACAGAG----GTATA----------T---TAAGT--AAATG--CTTTTTAT----ATCTGAAAA--ATCACAC-TTT--A----At
gi|3 : atgtA-ACATTC--CTT-----AGTTTAAAA-----GGACATGCAAGG-TTTT-CGCT-G--GAATAATGATT-ATAAG-TG-CTTAA------TTGTAGGAG-GC-AAGG-AATATTCCCAT-TCTTGAAAAGCTAATGTGGGCCCTTTAA--GGGGTATTTCTTTT--TATACA-TTTGTACACAA--AC---CGTCAGTTGTCA--T-T-CTG--AATTGCATG-ATGTAAAATG-T--C---G-AG---T------CAGA--TTGAA-G-GAA--C----TGAATTTCGATT--GATCTT-CATA-GC--GC--AGTG--GATAGCAAACG----G---------G----------TC---CATTCAAATTG-TTCAAAA-------T----AG------T---C-----------------------TTTTTG--------TTA---ACAAGTACATGTATCTT-CAAT------CTGA-T---------AAAAccaccaccccccacccccctctcccaataaacccaatgtaacattccttagtttaaaaggacatgcaaggttttcgctggaataatgattataagtgcttaattgtaggaggcaaggaatattcccattcttgaaaagctaatgtgggccctttaaggggtatttctttttatacatttgtacacaaaccgtcagttgtcattctgaattgcatgatgtaaaatgtcgagtcagattgaaggaactgaatttcgattgatcttcatagcgcagtggatagcaaacgggtccattcaaattgttcaaaatagtctttttgttaacaagtacatgtatcttcaatctgataaaa
gi|30 : atgttaaacaaatcaccatgacgttgcttaccatggatatactaagaatttttacagatcatgagagggggagggtagagcataacaagatgcaattcatatggagaatgtggaaatcattatgaccatttgataaaacaatagccatgcgacaagtacagaggtatattaagtaaatgctttttatatctgaaaaatcacactttaaccaccaccccccacccccctctcccaataaacccaatgt----AA------T---C-T------AT---------ATCAATTTTATC---ATTTTAATATCGA-TAC--GTTATTT-AAATAGTAC-TTGA-T---------GAAAGATGA
gi|31 : tcggTATTTTT----ATCTGAAAA-CGTCACATGTTgc
gi|4 : gactattaagtaagtcagtgctacatgTCGAATCT-TACACGCATGCGCACAGAGGGTAAAACATTTCG-GCAT---GTC---------GATGCAACATGTAGCAATGGACTATAACCAGAAT-TTTTACAGAATCTAT--GGAGAAAAGAGGCGCTATAGA--------AA-CGATATACAA------ACTCATAGATATGCAAAATATTAATTTATACGTGTGGGAT--ATTATGA-CCG---TTAATAAACCAAAGAGGCCGATGGAGT--CAGGTACACAGGCA-----GGCTAAATAAAAACGT---TAAGTAAG---GTTCTA-TTTT----ATCCGAAAA-CGTCAAATGTTTTAA----AAATGAAA-ACATTG--TTT-----AGTCTAA--------GACTTGGACGGGTTTT-CGTG-GACGAA-AATGATTTATAACGTGTCTTTAA-----TTATAAGAGCGC-TGGA-A-TAATCCTAT-TCTTGAAAAGC-AGTATGGATTCTTTAA--GGGGTA----
gi|5 : caaaccaaaacaaaagcaacacaatttTCGA-TCTGTACACGCATGAGCACAGAGAGC-AAACATTTAG-GCAT---GTC---------GAAGCA-----TA-CAATGAA-TATACCCAGGAT-TTTTACAGA--TTA-------AAAAGAGGC----GAGC----GTAAAA-CGAGAAAC-A------ACTCATA-ATACGCAAAATA-T-ATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAGAGTCAGACATGCACGCAG----GGCTA----------T---TAAGT--AGGTG--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--ATAAGAAAAAAAACACACCA--ATT-----AGTCTAAAA-----AGACCTTGAAGGGTTTT-Catcatcattctctcttacacagttg
gi|6 : tataaaaaataaaataaacgagtacccgccttAC-TCTTGAAACGCGAGTGTGAATTCTTCAA--GAGGTA----TTTTATTATA-AATTTCCACATAA-CATGT-C---TGTGGTCA--T-T-GTA--AATCACGTA-ATGTAAAATG-TC-C---G-AG---CTCGAGGCAGC--TTGAA-GAAAA--AT-TTTGAACTCCGGAT--GATATT-CATA-GT--GCAGAGTT--GAGAGCTAATCAATTG---------A----------TG---TAGTCAAATTG-TTCAAAA-------T----AG------T---C-GGA----ATCAATATTTAATTATTTCTATC---ATTTTA---TCGA-TAT--GTATTTT-AAATAGCAC-TTAA-TTGTCAGTTGAAAATATGAAAAATGAGTTGCAGTGT
gi|7 : TCGA-TCTTTAAACGTATGCGCACACACGAT-AAAC-TTTGGAGCAT---GT----------AAT--------TA-CA------TACACCCAGAAT-TTTCACAGA--TTTTTGGGAGAAAAGAGGT----TAGA----GTAGAA-CGAGACAC-A------ACTTAT---T-TGTAATATA-TAATT--TTCGAA-GGGGT-CATTATGA-CCGT--TTGATAAACC-AAGA-GAC-A--GA-----AGACAAGCACGCAG----GGCTA----------TCAATAAGT--G---A---TATTTTT----ACCTGACAA-CGTCACATG-TT--A----AAATCAAA-GTACTG--
gi|8 : ttgacggcccatgccaaaaataaagttcccgccttTCGA-CCTGTACACGCATGCGCACAGAGGGT-AACCATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACACCCAGAAT-ATTTACAGA--TTAT-GGGAGAAAAGAAGC----TAGA----GTAGAA-CGAGCTAC-A------ACTCATA-ATACGCAAAATA-TAATT--TACGTG-GGGAT-CATTATGA-Cag
gi|8 : aaaactttctaatggccaatactaaaaaacaaacgagtcaccgccctATAC-A------ATTTA--------CAAATTA-TAATT--TACGTG-GGGAT-CATTATGA-CTGT--TTAGCCATTC-ATGA-GTC-AT-AAtcatgaatggctaaacagtcataatgatccccacgtaaattataatttgtaaattgtat
gi|9 : aaaactttctaatggccaatactaaaaaacaaacgagtcaccgcccttcgacctgtacacgcatgcgcacagagggtaaccatttcagcatgtcgatgcatacaatggatacacccagaatatttacagattatgggagaaaagaagctagagtagaacgagctacaactcataatacgcaaaatataatttacgtggggatca-CATTATGG-TCGT--TCGCTAAACC-AAGA-GCC-AT-GAG------ACGCGCACGTAGTCAAGGATA----------T---TTAAT--GAGTG--CCATTTTA----A-CTGAAAA-CGTCACATGTT---------AAAAAAC-ACATTG--TTT-----AGTCTAAAA-----GGACAT-GAAGGGTTTC-CGTT-G--GAATAAGGATTTATTAT-TA---TGAA-----TAATGTGAG-ACAAGGG-A-GGTTTTCAT-TCTTGACAAGCGAGTGTGGATCCTTTAAAGAGGGTA----TTT
blockSeqs : A G A A A TTA CAGAGAGAG ACATG G C A AT T GCTA TAGA T A TGTACT TAGA T TA T C T AA A G G TG AGTCAG TCAA AAATAAAAACGTTAAGTAAGGTT TTTA A TATAAG T C . . . G G TTT ACGAA G T AAAATTCT A C AA TA A A G GGCCCTTTAAGGGGTATTTCTTTTTATACA A CGTACGTT AA A A AT G A T TGCATG A CTCGAGG TCAT T A GTTT TG G A T TG AG CA GAGCTAATCAATTGA AAG T TAGTCGGAATCAATATTTA . ATA G CAT A T TTGTCAGTTG
blockSeqs : . G . A . . . . . . . . . CT . . . . TAA . . . . . . . . . T TCAG . ATTAAGTAAATG . . TTAA T . . . . G G CT GAA . . TAA A . G TA . A G AATTCTTCAAGAGGTATTTTATTATAAA . CTCGTT . . . . T . . CC . CCGT CA . . CTC . . C . . . . GAGCTAATTGGT . . TTATTAGTTATCAAT . . . C . . TA
blockSeqs : . G . A . . . . . . . . . . . . . . AAA . . . . . . . . . C TCAG . ATTAAGTAGGTG . . TA A . . . . G . TT GAG . . GAA G . A AA . A G GATTCCTTAAGGGGGATTTTTATAAG . CCGTC . . . . T . . CC . T CT . . CT . . T . . . . GAGAAATTTGA . . TAGTCGGCATCGAT . . . C . . TT
blockSeqs : . T . A . . . . . . . . . . . . . . TAA . . . . . . . . . T CG . ATCAATAAGTGA . . TA T . . . . G . TT GAA . . GA A . A A . A G AATTCGTTAAGGGATATTTT . CGTT . . . . G . . CT . T CA . . CT . . A . . . . GAGCTAATTAA . . TAGTCGGAATCGAT . . . C . . TT
blockSeqs : . T . A . . . . . . . . . . . . . . TAA . . . . . . . . . T AG . ATTTAATGAGTG . . TA A . . . . G . CT GAA . . AA T . A A . C T G . CATC . . . . G . . CT . T CT . . AT . . T . . . . TAGCTAATTGA . . AAGTCGGAATCGAT . . . T . . TT
blockSeqs : . G . A . . . . . . . . . . . . . . TAA . . . . . . . . . T . . ATTAAGGG . . . T . . . . G . TG GAA . . AA . . T A . A G G . CATC . . . . A . . TC . A AT . . CT . . T . . . . TAGCAAACGGG . . AAGTCGGAATCGAT . . . T . . T
blockSeqs : . T . A . . . . . . . . . . . . . . TA . . . . . . . . . T . . TTAATA . . . A . . . . T . TT G . . A . . . A . . G . CGTC . . . . G . . CC . T CT . . CC . . A . . . . GAGCAATTGG . . GTCATTATCGAT . . . T . . T
blockSeqs : . G . A . . . . . . . . . . . . . . TA . . . . . . . . . T . . ATAAA . . . . . . . . . G . . . . . TGTC . . . . . . . C . . T . . CT . . T . . . . GTAAATTGA . . TTGTCACTAACG . . . A . . T
blockSeqs : . . . C . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . AT . . A . . . . GAGGAAAC . . TAGTCGGT . . . G . . T
blockSeqs : . . . . . . . . . . . . . . . . T . . . . . . . . . . . C . . T . . . . GA . . TAGTCTGA . . . C . . .
blockSeqs : . . . . . . . . . . . . . . . . . . T . . . . GA . . TAGTCGAT . . . T . . .
blockSeqs : . . . . . T . . . . GA . . ACTTGAC . . . . . .
blockSeqs : GA . . TAGTC
blockSeqCons : TAA* ATTAAGTAAGTG***************** ** ***** ***** GAA** A** AATTCTTTAAGGGGTATTTTTATAG********** CT*** TAGTCGGAATCGAT****************************** *** TT*********
originalCons : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAAATA-TAATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------T---TAAGT--G---G--CTATTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT-----AGTCTAAAA-----GGACATGGAAGGGTTTT-CGTT-G--GAATAATGATTTATAAT-TG-CTTAAA-----TTATAAGAG-GC-AGGG-A-TATTCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAA--GGGGTA----TTTT--TATA-G-TTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TC-C---G-AG---T------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAA-------T----AG------T---C-G------AT---------ATTATTTTTATC---ATTTTA---TCGA-TAC--GTATTTT-AAATAGCAC-TTGA-T---------AAAATATGAAAAATGAGCTGTAGTGT
finalCons : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A------ACTCATAA-TACGCAAAATA-TAATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTATTAAGTAAGTG-----------------CTATTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT-----AGTCTAAAA-----GGACATGGAAGGGTTTT-CGTT-GGAA--TAATGATTTATAAT-TG-CTTAAA-----TTATAAGAG-GC-AGGGA--TATTCCCAT-TCTTGAAAAGCGAGTGTGAATTCTTTAAGGGGTATTTTTATAG----------TTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TC-C---G-AG---T------CAGC--TTGAA-G-AAACT---TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAATAGTCGGAATCGAT------------------------------ATTATTTTTATC---ATTTTA---TCGA-TAC--GTATTTT-AAATAGCAC-TTGATT---------AAAATATGAAAAATGAGCTGTAGTGT
Alignments
lowQualScore : 111111111 1111 1111 333333 11111111111 111111111111111111111 11111111 11111 11111 22222222 111 66666666666666666666666666666666666 22222222 2222222222 9999999999999999999999999999999999 222222222222
lowQualScore : 4 5 3 1 3 555 333333333 88888 3 0 3 3 44 3 2222 7777 3 3 999999 1111 00 3 55 3 3 3 55 4 4 3 44 777777 8888 88888888888 444444444444444444444 8888 4 55555555 1 4 55 11111 00000 2 7 666 66666 0 5 5 88888888 5 5 77 111 4 1 33333333333333333333333333333333333 4 66666666 66 4 4 66 2 4 4 999999 4 0000000000 8888 3 3 55555 44 3 1 3 44 44 44 1111111111111111111111111111111111 555 2 6666 2 777 66666 555 555 3 3 3 555555555555 0
lowQualScore : . . . . . ... ......... ..... . . . . .. . .... .... . . ...... .... .. . .. . . . .. . . . .. ...... .... ........... ..................... .... . ........ . . .. ..... ..... . . ... ..... . . . ........ . . .. ... . . ................................... . ........ .. . . .. . . . ...... . .......... .... . . ..... .. . . . .. .. .. .................................. ... . .... . ... ..... ... ... . . . ............ .
lowQualScore : 0 0 3 2 3 888 333333333 33333 3 4 3 1 22 1 7777 7777 6 3 666666 0000 77 6 00 6 3 3 00 0 0 6 88 111111 5555 33333333333 888888888888888888888 5555 0 11111111 0 0 55 11111 00000 5 3 000 99999 1 0 0 00000000 1 0 22 444 4 1 66666666666666666666666666666666666 4 99999999 11 4 4 11 9 4 0 999999 0 9999999999 3333 6 6 66666 22 1 0 1 22 22 22 2222222222222222222222222222222222 000 9 1111 7 111 77777 444 888 7 3 3 999999999999 3
consensus : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAAATA-TAATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------TTAAGTAA-GT----GCTA------TTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT-----AGTCTAAAA-----GGACATGGAAGGGTTTT-CGTT-G--GAATAATGATTTATAAT-TG-CTTAAA-----TTATAAGAG-GCA-GGG-A-TATTCCCAT-TCTTGAAAAGCGAGTGTGGATTCTTTAA--GGGGTA----TTT--TTAT-A-GTTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TC-C---G-AG---T------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAAT----AGT-CGGAATCGAT-----ATTATTTTTATC---ATTTTA---TCGATACGTATTTTAAATAG-CAC-TTGATT--------AAAATATGAAAAATGAGCTGTAGTGT
Reference ( family-998 ) : NTCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAT-TTTTACAGA--TTAT-GGGAGAAAAGAGGC----TAGA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAAATA-TAATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAG---CAGACACGCACGCAG----GGCTA----------TTAAGTAA-GT----GCTA------TTTTT----ATCTGAAAA-CGTCACATGTTT--A----AAANAAAA-ACATTG--TTT-----AGTCTAAAA-----GGACATGGAAGGGTTTT-CGTT-G--GAATAATGATTTATAAT-TG-CTTAAA-----TTATAAGAG-GCA-GGG-A-TATTCCCAT-TCTTGAAAAGCGAGTGTGAATTCTTTAA--GGGGTA----TTT--TTAT-A-GTTTCTACATAA-CACGT-CGTCTGTTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TC-C---G-AG---T------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GATCTT-CANA-GC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAAT----AGT-CGGAATCGAT-----ATTATTTTTATC---ATTTTA---TCGATACGTATTTTAAATAG-CAC-TTGATT--------AAAATATGAAAAATGAGCTGTAGTGT
gi|1 : TCCA-TCTTTACACGCATGCGTACAGATGGT-AAACATTGCA-GCAT---GTC---------GAAGAG-----TG-CAGTAGA-TATACCCATATT-TTCCACAGA--TTAT-GGAAGAAAAGAGGT----TAGA----ATAGAA-CGAGATAC-A------ACTCATA--TAC--AAAATA-TAATT--TACGTG-GG-AT-CATTATGA-CCGT--ATGATAAACC-AAGA-GCC-AG-GAG------ACACGCACGTAG----GGCT-----------CTAAGTTA-GT----GCCA------TTTTT----ATCTGAAAA-AGTCTCATGTTT--A----AAAAAAAA-ACATGGGACATGGAAGAGTAAAAAAACATGGGACGTGGAAGAGTTTT-CGTT-G----------------AAT-TG-CTTGA------CTATAAGAG-GCA-GGA-AATATTCCCAT-TCTTGAAAAGCTAGTGTG-------TA---------------T--TTA---------TACACAA-CA----CGTCTGTTGTCA--T-T-CAA--AATCACGTA-ATGTGAAGTG-TC-C---G-AG---T------CAGC--ATGTG-G-ACA--C---------------T--GATCTT-CAAA-GC--GC--ACTT--GAGAGCTAATT----G---------A----------TG---CAATCAAGGTA-TTCAACAT----ACTATGTAGTTGGT-----ATTATTTTTTTTTTGATTTTG---TCTATGCGTAGTTTAAATAG-TAT-TTGATT---------AAATATGAAAAATGAGCTGTAG
gi|10 : atactttttgacatcccatacaaagagacttccccggcttAAAA-----ACACATGGAAGGGTTTC-CGCT-
gi|10 : TTTC-CGTT-G--GAATAATACTTTATAAT-TA-CTT-GA-----TTATAAGAG-GCG-GGA-A-tttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggatatataagtttctacataacacgtttattgtcattctaaatcacgtgatgtaaaatgttgcatggagccgtcagcatgaagaaacttttgaattccggatgtttttcaaagcgcagtggagagaaatttgatgcattgaaattgttcacaatagtcggtatcgatat
gi|10 : aaaaacacatggaagggtttccgcttttatTAT-AAGTTTCTACATAA-CACGT-T---TATTGTCA--T-T-CTA--AATCACGTG-ATGTAAAATG-TTGCATGG-AGCCGT------CAGC--ATGAA-G-AAA--CT-TTTGAATTCCGGAT--GTTTTT-CAAA-GC--GC--AGTG--GAGAGAAATTT----G---------A----------TG---CATTGAAATTG-TTCACAAT----AGT-CGGTATCGAT-----ATtacggatatataagtttctacataacacgtttattgtcattctaaatcacgtgatgtaaaatgttgcatggagccgtcagcatgaagaaacttttgaattccggatgtttttcaaagcgcagtggagagaaatttgatgcattgaaattgttcacaatagtcggtatcgatat
gi|11 : aaaaacacatggaagggtttccgcttttatttcccgcctcttataatcaagtaattataaagtattattccaacggaaatacggata-ACGTTG--TTT-----AGTCTATAA-----GCACGTGGAATGACTTTGCG---G--G--TAATGGTTTATAAT-TG-CTT--A-----TTCT-AGAG-GCA-GGGTA-TATTCCCATATCTTG-AAAGCGAGTGTG----------------------------------GTTTCTAC-TAA-CA----CATCTGCTGTCA--TATACTAATAAT-ACTTGAATGTAAAATATTC-C---GAAG---T------CAGTCATTGAA-A-AAA--CTCTTTGAATTCC-GAT--GATCTTGTACA-GC--GC--AATT--G
gi|12 : at--A----AAATAAAA-ACGTTG--TTT-----AGTCTATAA-----GGACATGGAATGACTTTGCG---G--G--TAATGGTTTATAAT-TG-CTTAA------TTATAAGAG-GCA-GGGTA-TATTCCCAT-TCTTGAAA-GCGAGTGTG----------------------------------GTTTCTACATAA-CACAT-C---TGCTGTCA--T-T-CTA--AATCACTTG-ATGTAAAATA-TC-C---G-AG---T------CAGC--TTGAA-A-AAA--CT-TTTGAATTCCGGAT--GATCTT-TATA-GC--GC--AATT--GA-------------cggacggttcatttacaccatttcaaga
gi|13 : TCGA-TCTGTACACGCAAGCGCACAGAGGGT-AAACATTTCG-GCAT---GTT---------GATGCA-----TA-CAATGGA-TATACCGAGAAT-TTTTACAGA--TTAT-GGGAGAATAGAGAC----TAAA----GTAGAA-CGAGATAC-A------ACTCATA-ATACGCAAATTA-TAATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATA-----AAGG-GCC-AT-GAcacggttatttacaccatttcaaga
gi|14 : cgcttcggcctatacaaaacaggggaaaaaaccgagtccccacctTCGA-CCTG-ACACGCATGCGCACAGAGGGT-AA-CATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACA-CCAG-AT-ATTTACAGA--TTAT-GGGAGAAAAGAAGC----TAG-----GTAGAA-CGAGCTAA-C------ACTCAT--ATACGCAAAATA-TAATT--TACGTG-GGGATCCATTATGATCCATAAATGGTAAACatgtta
gi|15 : ggccaatactaaaaaacaaacgagtcggccctAATG-TC-T---A-AG---T------CTGC--ATGAA-G-AAA--AT-TTTGAATTCCGACT--GACCTT-CAAT-GC--GC--TGTT--GA-------------G---------AGGAAAC----TGAAGTATTCAAATTT-TTTAAAAT----AGT-CGGCATCGAT-----ATTATTTTTATA---ATTTTG---TCGATACGCATTTTAAATAG-CAC-TTGATA--------AAAATGTGAAAAATGAGCTGTAGTagt
gi|16 : gtgtGG-A-TATTCCCAT-TTGTGAAAAGCGAGTGTCAATTCGTTAA--GGGATA----TTT--T-------------------CACGT-C------TATCA--T-T-CTA--AATCACGTG-ACGTAAAATG-T------------------------------A-G-AAA--CT-TTTGAATTCCCGAT--GATCTG-CATA-GC--AC--AGTT--GA-------------GAGCTAATTAA----------TG---CA-TCAACTTA-TTCAAAAT----AGT-CGGAATCGAT-----ATTATGTT
gi|17 : CATAAACAC-T-CGTTTGATGACAAAT-T-CTA--A-TCACGTG-ATGTAAAATG-TC-T---A-AG----------CAG---TTGAATG-AAAGTTT-TTTGAATTCCGAATTGAATGCT-CATATGT--GC--AGAT--GA-------------G---------AGCTAATTGGTTG---TGTTCAAATTGTTTTAAAAT----AGT-CTGAATCG-T-----TTTACTACTA-C---ATTT
gi|18 : TGAA-T-AAA--CC-TTTGAATTC-GGAT--GATCTT-CAAA-GCTGAT--AGTTCAGA-------------GTAAATTG--A----------TG---CATTCAAATTG-TTCAAGATTATTAGT-T---ATCAAT-----ATCATTTTTATC---ATTTTA---TCGATACATATTTTGAATAG-CAC-TTCATT--------AAAATGTGGAAAATGAGCTGTAGTctaat
gi|19 : cACCCAGGGT-TTTGACAAA--T----GTTCGAAGAGATGTCT--TAAA----GTAGTA-CGAGATAC-ATGTACTACTCA---ATAAGCAAAATA-TAATT--TACATG-GGGAT-CATTATGA-CTTT--TTGATAAACC-AAGA-GAC-------------ACACGATCGCAA----GGCT-----------TTAA-TAA-A----------------TTTT----ATCTGAAAA-CCTCAagt
gi|2 : TCGA-TCTGTACACGCATGCGCACAGAGGGT-AAACATTTCG-GCAT---GTC---------GATGCA-----TA-CAATGGA-TATACCCAGAAG-TTTTACGGA--TTAT-GGGAGAAAATTGGT----TAGA----ATACACTCGAGATAC-A------ACTCAAA-ATGTGGAAAATA-TAATT--TACGT----------TTG------GT--TTGATAAACC-AAGA-GCC-AC-GAGT--CAGACACGTACGCAG----GGCTA----------TTAAG----G-----GCTA------TTTTTTTTAATCTGAAAA-CGTGTCATGTTT--A----AATTCAAA-ACATTG--TTT-----AGTCTAACA-----GAACAT--AAGAGTTTT-CATTTG--GAGTAATGAGTTATAAG-TG-CTTAAAATTCTTTAT------GC--------TATCCCCAT-TCTTGAAAAACGAGTGTGGATTCCTTAA--GGGGGA----TTT--TTAT-AAGTTTCTACATAA-CACGTACGTTTGTTGTCA--T-T-CTA--AATCAC----ATGTAAAAT--TT-C---G-AA---A------CAGC--TTGAA-G-AAA--CT-TTTGAATTCCGGAT--GAATTT-CATA-AC--GC--AGTT--GA-------------G---------A----------TG---CATTCAAATTG-TTCAAAAT----AG-------TCGAT-----ATTATTTTTATC---GTTTTA---TCTATACGTATTTTAAATAG-CAC-TTGA-T--------AAAATATGAAAAATGAGCTGTAGTGTt
gi|20 : gTCGG-TCTTTACACGCATAAGCAGAGAAGGT-AAAC--TACA-GCATTTAGTCCAGAGAGAGGAAGCG-----TA-AAATGGA-TAGATCCAGAAA-TTTGACAGA--TTAT-GCAAGAAAAc
gi|21 : aattaatacttagccctatgaaatatacattgagactccttCCAAAT--GATCTT-CAAA-GA--GC--AGTT--GA-------------G---------AGCAATTGG--TG---AATTTAGATTG-TTCAAA----------C----TTGAC-----AGCATTCT-ATT---ACTTTA---TCGGTG---ATTTTAAAAAAACAA-ACGATT--------AAGAAGTGAAAAATGAGCTGTAGTATtcaag
gi|22 : tgacaatttgatgacac-TTTGAATTCCGGAT--GATCTG-CATA-GC--GC--AGTT--GATAGCTAATT----G---------A----------TG---CATTACAATTG-TTCACAAA----AGT-CGGAATCGAT-----ATTATGTTTATC---ACTTTA---TCGATATGTATTTTAAATAT-CAC-TTG----------------ATGAAAAATAAGCCGTAGT
gi|23 : gcg-------------G---------A----------TG---CATTCAAATTG-TTCAAAA------GT-CATTATCGAT-----ATTAATGTTATC---ATTTTG---TCGATATGTATTTTAAATAG-CAC-TTGATT--------AAAATATGAAAAATGAGCTGTAGT
gi|24 : tgagagaaaatc-------------G---------A----------TG---CATTACAATTG-TTCACAAA----AGT-CGGAATCGAT-----ATTATGTTTATC---ACTTTA---TCGATATGTATTTTAAATAT-CAC-TTG----------------ATGAAAAATAAGCCGTAGT
gi|25 : gttgatagctaattTTGA-TCTTTACACACATGCAAACAGAGGGT-AAACATTTCA-GCAT---ATC---------GATGCA-----GA-CAATCGA-TATATCTAGAAT-TTATATAGA--TTAT-GGGAGAAGAt
gi|26 : ccgtcttC-AT-GAG------ACACGCACGAAG----AGCTA----------TAAA------------CT-------TTTCC----CCCTGAAAAACGTCGCGTGTT-----------AAAAA-ACCCAG--TCA-----GGTATATAG-----GGACATGCAAGGGCTTC-CGTT-A--GAATAATGATtaaaagat
gi|27 : TGCACACAAATGGT-AA-CATTTCA-GCAA---GTC---------GATACA-----TA-CA----------CCCATAATATTTTACAGA--TTTT-GGAAGAAAAGAGGC----TAGATAGAGTAGAA-CGAGATAC-A------ACTCATA-ATA
gi|28 : c-------------G---------A----------TG---CATTCATATTG-TTCAAAAT----TGT-CACTAACGAT-----G--AGTTTTCTT---ATTTTA---TCGATAAGAATCATAAGTAG-CAC-T
gi|29 : aaattATCAAT-----ATTATTTTTAAC---ATTTTG---TCGATAGGTATTTCAATTAA-AACTTTGA-T--------AAGATATGAAATATGACGTGTAGTatatgagctgttatgtt
gi|3 : tT-AAACAAATCA-CCAT---GAC---------GTTGCT-----TA-CCATGGA-TATACTAAGAAT-TTTTACAGA--TCAT-GAGAGGGG-GAGGG----TAGA----GCATAA-CAAGATGC-A------ATTCATA----TGGAGAAT------------GTG-GAAAT-CATTATGA-CCAT--TTGATAAAAC-AATA-GCC-AT---G---C-GACAAGTACAGAG----GTATA----------TTAAGTAA-AT----GCTT------TTTAT----ATCTGAAAA--ATCACAC-TTT--A----At
gi|3 : atgtA-ACATTC--CTT-----AGTTTAAAA-----GGACATGCAAGG-TTTT-CGCT-G--GAATAATGATT-ATAAG-TG-CTTAA------TTGTAGGAG-GCA-AGG-AATATTCCCAT-TCTTGAAAAGCTAATGTGGGCCCTTTAA--GGGGTATTTCTTT--TTAT-ACATTTGTACACAA--AC---CGTCAGTTGTCA--T-T-CTG--AATTGCATG-ATGTAAAATG-T--C---G-AG---T------CAGA--TTGAA-G-GAA--C----TGAATTTCGATT--GATCTT-CATA-GC--GC--AGTG--GATAGCAAACG----G---------G----------TC---CATTCAAATTG-TTCAAAAT----AGT-Cccaccaccccccacccccctctcccaataaacccaatgtaacattccttagtttaaaaggacatgcaaggttttcgctggaataatgattataagtgcttaattgtaggaggcaaggaatattcccattcttgaaaagctaatgtgggccctttaaggggtatttctttttatacatttgtacacaaaccgtcagttgtcattctgaattgcatgatgtaaaatgtcgagtcagattgaaggaactgaatttcgattgatcttcatagcgcagtggatagcaaacgggtccattcaaattgttcaaaatagtctttttgttaacaagtacatgtatcttcaatctgataaaa
gi|30 : atgttaaacaaatcaccatgacgttgcttaccatggatatactaagaatttttacagatcatgagagggggagggtagagcataacaagatgcaattcatatggagaatgtggaaatcattatgaccatttgataaaacaatagccatgcgacaagtacagaggtatattaagtaaatgctttttatatctgaaaaatcacactttaaccaccaccccccacccccctctcccaataaacccaatgtT-CGGAATCTAT-----ATCAATTTTATC---ATTTTAATATCGATACGTTATTTAAATAG-TAC-TTG----------------ATGAAAGATGAGCtttttgttaacaagtacatgtatcttcaatctgataaaa
gi|31 : ----GACTA----------TTAAGTAA-GTCAGTGCTACATGTATTTTT----ATCTGAAAA-CGTCACATGTT
gi|4 : TCGAATCT-TACACGCATGCGCACAGAGGGTAAAACATTTCG-GCAT---GTC---------GATGCAACATGTAGCAATGGACTATAACCAGAAT-TTTTACAGAATCTAT--GGAGAAAAGAGGCGCTATAGA--------AA-CGATATACAA------ACTCATAGATATGCAAAATATTAATTTATACGTGTGGGAT--ATTATGA-CCG---TTAATAAACCAAAGAGGCCGATGGAGT--CAGGTACACAGGCA-----GGCTAAATAAAAACGTTAAGTAAGGT----TCTA-------TTTT----ATCCGAAAA-CGTCAAATGTTTTAA----AAATGAAA-ACATTG--TTT-----AGTCTAA--------GACTTGGACGGGTTTT-CGTG-GACGAA-AATGATTTATAACGTGTCTTTAA-----TTATAAGAGCGCT-GGA-A-TAATCCTAT-TCTTGAAAAGC-AGTATGGATTCTTTAA--GGGGTA----
gi|5 : caaaccaaaacaaaagcaacacaatttTCGA-TCTGTACACGCATGAGCACAGAGAGC-AAACATTTAG-GCAT---GTC---------GAAGCA-----TA-CAATGAA-TATACCCAGGAT-TTTTACAGA--TTA-------AAAAGAGGC----GAGC----GTAAAA-CGAGAAAC-A------ACTCATA-ATACGCAAAATA-T-ATT--TACGTG-GGGAT-CATTATGA-CCGT--TTGATAAACC-AAGA-GCC-AT-GAGAGTCAGACATGCACGCAG----GGCTA----------TTAAGTAG-GT----GCTA------TTTTT----ATCTGAAAA-CGTCACATGTTT--ATAAGAAAAAAAACACACCA--ATT-----AGTCTAAAA-----AGACCTTGAAGGGTTTT-Catcatcattctctcttacacagttg
gi|6 : tataaaaaataaaataaacgagtacccgccttAC-TCTTGAAACGCGAGTGTGAATTCTTCAA--GAGGTA----TTTTATTATAA-ATTTCCACATAA-CA----TGTCTGTGGTCA--T-T-GTA--AATCACGTA-ATGTAAAATG-TC-C---G-AG---CTCGAGGCAGC--TTGAA-GAAAA--AT-TTTGAACTCCGGAT--GATATT-CATA-GT--GCAGAGTT--GAGAGCTAATCAATTG---------A----------TG---TAGTCAAATTG-TTCAAAAT----AGT-CGGAATCAATATTTAATTATTTCTATC---ATTTTA---TCGATATGTATTTTAAATAG-CAC-TTAATTGTCAGTTGAAAATATGAAAAATGAGTTGCAGTGT
gi|7 : TCGA-TCTTTAAACGTATGCGCACACACGAT-AAAC-TTTGGAGCAT---GT----------AAT--------TA-CA------TACACCCAGAAT-TTTCACAGA--TTTTTGGGAGAAAAGAGGT----TAGA----GTAGAA-CGAGACAC-A------ACTTAT---T-TGTAATATA-TAATT--TTCGAA-GGGGT-CATTATGA-CCGT--TTGATAAACC-AAGA-GAC-A--GA-----AGACAAGCACGCAG----GGCTA----------TCAA-TAA-GT----GATA------TTTTT----ACCTGACAA-CGTCACATG-TT--A----AAATCAAA-GTACTG--
gi|8 : ttgacggcccatgccaaaaataaagttcccgccttTCGA-CCTGTACACGCATGCGCACAGAGGGT-AACCATTTCA-GCAT---GTC---------GATGCA-----TA-CAATGGA-TACACCCAGAAT-ATTTACAGA--TTAT-GGGAGAAAAGAAGC----TAGA----GTAGAA-CGAGCTAC-A------ACTCATA-ATACGCAAAATA-TAATT--TACGTG-GGGAT-CATTATGA-Cag
gi|8 : aaaactttctaatggccaatactaaaaaacaaacgagtcaccgccctATAC-A------ATTTA--------CAAATTA-TAATT--TACGTG-GGGAT-CATTATGA-CTGT--TTAGCCATTC-ATGA-GTC-AT-AAtcatgaatggctaaacagtcataatgatccccacgtaaattataatttgtaaattgtat
gi|9 : aaaactttctaatggccaatactaaaaaacaaacgagtcaccgcccttcgacctgtacacgcatgcgcacagagggtaaccatttcagcatgtcgatgcatacaatggatacacccagaatatttacagattatgggagaaaagaagctagagtagaacgagctacaactcataatacgcaaaatataatttacgtggggatca-CATTATGG-TCGT--TCGCTAAACC-AAGA-GCC-AT-GAG------ACGCGCACGTAGTCAAGGATA----------TTTAATGA-GT----GCCA------TTTTA----A-CTGAAAA-CGTCACATGTT---------AAAAAAC-ACATTG--TTT-----AGTCTAAAA-----GGACATG-AAGGGTTTC-CGTT-G--GAATAAGGATTTATTAT-TA---TGAA-----TAATGTGAG-ACAAGGG-A-GGTTTTCAT-TCTTGACAAGCGAGTGTGGATCCTTTAAAGAGGGTA----TTT--